Query 039497
Match_columns 642
No_of_seqs 299 out of 3363
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 17:39:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039497.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039497hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k32_A Tricorn protease; prote 100.0 1.5E-35 5.1E-40 346.1 43.3 523 4-618 24-626 (1045)
2 1k32_A Tricorn protease; prote 100.0 4.9E-32 1.7E-36 316.5 40.9 428 94-617 18-489 (1045)
3 2ymu_A WD-40 repeat protein; u 100.0 3.6E-30 1.2E-34 281.8 46.0 480 18-620 78-570 (577)
4 2ymu_A WD-40 repeat protein; u 100.0 1.6E-29 5.4E-34 276.7 46.8 480 18-620 37-529 (577)
5 1nr0_A Actin interacting prote 100.0 5.2E-28 1.8E-32 266.1 44.7 510 4-621 30-602 (611)
6 3sfz_A APAF-1, apoptotic pepti 100.0 5.3E-27 1.8E-31 280.0 41.3 500 18-621 636-1240(1249)
7 3pe7_A Oligogalacturonate lyas 100.0 1.1E-26 3.8E-31 240.7 32.8 326 17-471 9-386 (388)
8 1nr0_A Actin interacting prote 100.0 3.9E-25 1.3E-29 243.2 41.5 469 43-619 18-556 (611)
9 3c5m_A Oligogalacturonate lyas 100.0 4E-26 1.4E-30 237.0 31.0 367 1-596 1-391 (396)
10 4a5s_A Dipeptidyl peptidase 4 99.9 3.3E-25 1.1E-29 249.3 37.2 370 142-596 19-456 (740)
11 3pe7_A Oligogalacturonate lyas 99.9 2E-26 6.9E-31 238.8 25.3 347 121-590 12-385 (388)
12 3sfz_A APAF-1, apoptotic pepti 99.9 1.2E-24 4E-29 259.8 41.8 479 36-618 608-1197(1249)
13 2ecf_A Dipeptidyl peptidase IV 99.9 2.5E-24 8.6E-29 242.8 39.2 362 142-597 39-467 (741)
14 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.8E-24 9.5E-29 224.4 32.1 314 244-611 64-409 (415)
15 2ecf_A Dipeptidyl peptidase IV 99.9 1.5E-23 5.1E-28 236.5 40.1 318 142-529 111-466 (741)
16 1xfd_A DIP, dipeptidyl aminope 99.9 1.5E-23 5.2E-28 235.8 35.9 347 142-563 19-431 (723)
17 1xfd_A DIP, dipeptidyl aminope 99.9 3.6E-24 1.2E-28 240.8 26.1 334 195-618 21-428 (723)
18 1pgu_A Actin interacting prote 99.9 1.9E-22 6.4E-27 222.1 38.7 501 4-621 30-605 (615)
19 4a5s_A Dipeptidyl peptidase 4 99.9 6.3E-23 2.2E-27 230.7 34.4 350 121-530 37-457 (740)
20 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.1E-23 1.8E-27 214.8 30.8 316 143-553 66-409 (415)
21 3mkq_A Coatomer beta'-subunit; 99.9 1.5E-22 5.3E-27 230.7 33.5 426 34-617 4-486 (814)
22 1z68_A Fibroblast activation p 99.9 1.7E-22 6E-27 226.9 33.1 360 143-595 19-449 (719)
23 2z3z_A Dipeptidyl aminopeptida 99.9 5.1E-21 1.7E-25 214.5 42.8 355 143-596 29-442 (706)
24 1pgu_A Actin interacting prote 99.9 2.2E-20 7.6E-25 205.5 40.0 430 19-563 142-605 (615)
25 3mkq_A Coatomer beta'-subunit; 99.9 5.8E-21 2E-25 217.7 35.7 421 18-561 34-488 (814)
26 2z3z_A Dipeptidyl aminopeptida 99.9 2.4E-20 8.2E-25 209.0 38.7 338 122-529 46-442 (706)
27 1z68_A Fibroblast activation p 99.9 4.2E-21 1.4E-25 215.7 31.3 350 121-530 37-451 (719)
28 3c5m_A Oligogalacturonate lyas 99.9 3.2E-21 1.1E-25 199.9 26.7 225 337-619 124-370 (396)
29 2oaj_A Protein SNI1; WD40 repe 99.9 2.1E-19 7E-24 205.2 42.9 441 40-563 14-652 (902)
30 1gxr_A ESG1, transducin-like e 99.9 7.4E-19 2.5E-23 177.5 36.0 310 142-563 12-328 (337)
31 2ojh_A Uncharacterized protein 99.9 1.9E-19 6.4E-24 178.1 30.6 266 215-563 22-293 (297)
32 1r5m_A SIR4-interacting protei 99.9 1.5E-19 5E-24 189.0 31.2 334 140-589 46-425 (425)
33 1gxr_A ESG1, transducin-like e 99.9 3E-19 1E-23 180.4 31.0 311 195-621 14-328 (337)
34 2oaj_A Protein SNI1; WD40 repe 99.9 1.4E-18 4.9E-23 198.3 37.3 432 17-525 37-667 (902)
35 2ojh_A Uncharacterized protein 99.8 4.1E-19 1.4E-23 175.6 27.5 240 333-619 45-291 (297)
36 3o4h_A Acylamino-acid-releasin 99.8 1.9E-19 6.4E-24 196.9 25.5 280 142-528 24-320 (582)
37 3azo_A Aminopeptidase; POP fam 99.8 5.3E-18 1.8E-22 188.5 36.8 298 4-410 33-367 (662)
38 3u4y_A Uncharacterized protein 99.8 7.1E-18 2.4E-22 170.2 33.4 319 196-611 3-326 (331)
39 3o4h_A Acylamino-acid-releasin 99.8 2.3E-19 7.7E-24 196.3 24.0 278 244-595 23-320 (582)
40 3ow8_A WD repeat-containing pr 99.8 3.5E-18 1.2E-22 171.7 29.7 266 238-563 28-312 (321)
41 1l0q_A Surface layer protein; 99.8 1.8E-17 6.3E-22 171.4 35.1 268 173-529 12-282 (391)
42 3zwl_B Eukaryotic translation 99.8 1.6E-17 5.4E-22 169.9 33.3 304 132-523 25-347 (369)
43 3ow8_A WD repeat-containing pr 99.8 9.1E-18 3.1E-22 168.7 30.2 275 278-621 29-312 (321)
44 3azo_A Aminopeptidase; POP fam 99.8 1E-17 3.5E-22 186.2 33.4 312 134-531 18-378 (662)
45 3vl1_A 26S proteasome regulato 99.8 3.6E-18 1.2E-22 178.5 27.2 308 143-563 60-410 (420)
46 3bws_A Protein LP49; two-domai 99.8 2.9E-17 1E-21 172.4 34.2 303 121-522 102-432 (433)
47 2xdw_A Prolyl endopeptidase; a 99.8 1.9E-17 6.6E-22 185.2 33.5 303 148-530 80-424 (710)
48 2pm9_A Protein WEB1, protein t 99.8 6.1E-19 2.1E-23 184.0 19.9 300 143-524 16-339 (416)
49 3bws_A Protein LP49; two-domai 99.8 2.9E-17 9.8E-22 172.4 32.5 341 145-589 69-432 (433)
50 1r5m_A SIR4-interacting protei 99.8 5.3E-18 1.8E-22 177.1 25.8 299 243-621 46-416 (425)
51 2gop_A Trilobed protease; beta 99.8 2.1E-17 7.3E-22 167.9 29.0 313 143-600 18-341 (347)
52 1l0q_A Surface layer protein; 99.8 7.4E-17 2.5E-21 166.8 32.8 276 204-593 3-279 (391)
53 3fm0_A Protein CIAO1; WDR39,SG 99.8 1E-16 3.5E-21 162.9 32.8 306 134-524 10-337 (345)
54 2pm9_A Protein WEB1, protein t 99.8 6.5E-18 2.2E-22 176.2 24.3 313 244-620 14-404 (416)
55 4h5i_A Guanine nucleotide-exch 99.8 8.7E-17 3E-21 164.6 31.9 194 334-563 138-334 (365)
56 2pbi_B Guanine nucleotide-bind 99.8 1.2E-16 4.1E-21 162.9 31.6 279 236-621 58-348 (354)
57 1got_B GT-beta; complex (GTP-b 99.8 1.1E-16 3.8E-21 162.2 31.1 278 236-621 49-334 (340)
58 4g56_B MGC81050 protein; prote 99.8 2.2E-17 7.4E-22 168.6 25.9 272 240-563 40-334 (357)
59 2pbi_B Guanine nucleotide-bind 99.8 2.3E-16 7.9E-21 160.8 33.0 285 132-506 57-349 (354)
60 1got_B GT-beta; complex (GTP-b 99.8 1.6E-16 5.5E-21 161.0 31.5 287 132-519 48-340 (340)
61 3vl1_A 26S proteasome regulato 99.8 5.8E-17 2E-21 169.3 29.1 308 195-621 61-410 (420)
62 1vyh_C Platelet-activating fac 99.8 8.2E-17 2.8E-21 167.7 29.8 282 134-520 103-409 (410)
63 2bkl_A Prolyl endopeptidase; m 99.8 5.2E-17 1.8E-21 181.1 29.4 308 95-530 74-405 (695)
64 4h5i_A Guanine nucleotide-exch 99.8 1.3E-16 4.5E-21 163.2 29.8 193 374-621 135-334 (365)
65 1vyh_C Platelet-activating fac 99.8 1.1E-16 3.6E-21 166.8 29.3 278 236-621 102-402 (410)
66 3zwl_B Eukaryotic translation 99.8 4E-16 1.4E-20 159.4 33.3 304 234-621 24-337 (369)
67 3vgz_A Uncharacterized protein 99.8 3E-16 1E-20 159.5 31.5 282 195-563 45-335 (353)
68 3u4y_A Uncharacterized protein 99.8 6.6E-16 2.3E-20 155.7 33.5 291 145-528 3-310 (331)
69 3scy_A Hypothetical bacterial 99.8 3.4E-16 1.2E-20 160.0 31.6 292 172-529 28-346 (361)
70 2gop_A Trilobed protease; beta 99.8 4.1E-17 1.4E-21 165.8 24.5 230 331-618 60-318 (347)
71 1nir_A Nitrite reductase; hemo 99.8 4.1E-16 1.4E-20 167.7 33.0 364 145-614 143-534 (543)
72 4gqb_B Methylosome protein 50; 99.8 6.4E-17 2.2E-21 163.9 24.8 223 333-618 86-319 (344)
73 4g56_B MGC81050 protein; prote 99.8 1.5E-17 5.2E-22 169.7 20.3 278 280-621 41-334 (357)
74 3vgz_A Uncharacterized protein 99.8 2.8E-16 9.5E-21 159.9 29.6 227 333-619 92-334 (353)
75 2ynn_A Coatomer subunit beta'; 99.8 8.3E-16 2.8E-20 153.1 32.4 284 134-522 8-302 (304)
76 3hfq_A Uncharacterized protein 99.8 1.5E-15 5.3E-20 154.2 35.1 278 121-472 19-322 (347)
77 3fm0_A Protein CIAO1; WDR39,SG 99.8 3.8E-16 1.3E-20 158.6 30.0 287 236-591 9-337 (345)
78 4gqb_B Methylosome protein 50; 99.8 2.7E-16 9.4E-21 159.3 28.5 280 244-590 32-332 (344)
79 2bkl_A Prolyl endopeptidase; m 99.8 2.5E-16 8.4E-21 175.7 30.7 306 196-598 73-406 (695)
80 4ery_A WD repeat-containing pr 99.8 1.6E-15 5.4E-20 151.6 33.7 273 135-503 19-299 (312)
81 1erj_A Transcriptional repress 99.8 6.2E-16 2.1E-20 160.1 31.6 288 138-521 63-388 (393)
82 3hfq_A Uncharacterized protein 99.8 1.8E-15 6E-20 153.8 34.5 285 212-596 15-326 (347)
83 2xdw_A Prolyl endopeptidase; a 99.8 1.6E-16 5.3E-21 177.8 29.1 242 334-614 129-394 (710)
84 1yr2_A Prolyl oligopeptidase; 99.8 2.9E-15 9.8E-20 168.3 38.2 306 95-481 113-449 (741)
85 2ynn_A Coatomer subunit beta'; 99.8 1.1E-15 3.8E-20 152.2 31.0 278 236-620 7-293 (304)
86 1ri6_A Putative isomerase YBHE 99.8 1.1E-15 3.7E-20 154.6 31.4 310 203-612 5-335 (343)
87 3iz6_a 40S ribosomal protein R 99.8 7.6E-16 2.6E-20 158.6 30.3 299 133-523 60-376 (380)
88 1nir_A Nitrite reductase; hemo 99.7 3.3E-15 1.1E-19 160.6 36.2 326 121-530 160-522 (543)
89 3iz6_a 40S ribosomal protein R 99.7 8E-16 2.7E-20 158.5 30.2 283 236-590 60-376 (380)
90 4ery_A WD repeat-containing pr 99.7 1.1E-15 3.9E-20 152.7 29.9 267 237-561 18-299 (312)
91 3frx_A Guanine nucleotide-bind 99.7 4.3E-16 1.5E-20 156.3 26.9 275 236-563 11-308 (319)
92 1yr2_A Prolyl oligopeptidase; 99.7 6.2E-16 2.1E-20 173.7 30.1 300 196-530 112-449 (741)
93 1erj_A Transcriptional repress 99.7 1.7E-15 5.7E-20 156.8 30.4 225 334-621 128-380 (393)
94 2xzm_R RACK1; ribosome, transl 99.7 2.1E-15 7.3E-20 152.9 30.0 287 134-522 16-340 (343)
95 2j04_A TAU60, YPL007P, hypothe 99.7 1E-16 3.6E-21 167.1 19.4 310 243-620 16-351 (588)
96 3iuj_A Prolyl endopeptidase; h 99.7 6.5E-15 2.2E-19 163.8 34.0 305 197-530 83-413 (693)
97 3frx_A Guanine nucleotide-bind 99.7 6.5E-15 2.2E-19 147.7 30.9 275 275-621 11-308 (319)
98 1ri6_A Putative isomerase YBHE 99.7 2.1E-14 7.3E-19 145.0 34.5 299 173-555 15-336 (343)
99 2xzm_R RACK1; ribosome, transl 99.7 1.3E-15 4.4E-20 154.6 24.5 268 236-563 15-331 (343)
100 3ei3_B DNA damage-binding prot 99.7 9.3E-15 3.2E-19 150.6 31.2 285 134-522 68-382 (383)
101 1k8k_C P40, ARP2/3 complex 41 99.7 1.2E-14 4.1E-19 148.8 31.1 234 241-559 7-262 (372)
102 1pby_B Quinohemoprotein amine 99.7 1.2E-14 4.2E-19 146.4 30.4 280 204-596 3-318 (337)
103 3scy_A Hypothetical bacterial 99.7 1.3E-14 4.6E-19 148.1 30.7 292 257-596 15-346 (361)
104 3i2n_A WD repeat-containing pr 99.7 6.5E-15 2.2E-19 149.8 27.3 303 138-523 17-354 (357)
105 1sq9_A Antiviral protein SKI8; 99.7 2.5E-14 8.4E-19 148.0 31.7 305 133-523 10-396 (397)
106 3s25_A Hypothetical 7-bladed b 99.7 1.9E-14 6.5E-19 141.4 28.3 190 336-596 110-300 (302)
107 1k8k_C P40, ARP2/3 complex 41 99.7 1.8E-14 6.1E-19 147.5 29.4 289 138-523 7-362 (372)
108 4aez_A CDC20, WD repeat-contai 99.7 3E-14 1E-18 147.8 31.4 270 250-592 99-383 (401)
109 3iuj_A Prolyl endopeptidase; h 99.7 2.3E-14 7.7E-19 159.5 32.3 299 250-598 84-414 (693)
110 4e54_B DNA damage-binding prot 99.7 6.6E-15 2.2E-19 154.6 26.1 296 196-593 125-434 (435)
111 4aez_A CDC20, WD repeat-contai 99.7 2E-14 6.7E-19 149.2 29.5 264 121-472 114-383 (401)
112 3dw8_B Serine/threonine-protei 99.7 2E-14 6.8E-19 151.3 29.9 148 333-520 230-444 (447)
113 4aow_A Guanine nucleotide-bind 99.7 6.6E-15 2.2E-19 148.7 25.1 286 237-590 33-338 (340)
114 2j04_B YDR362CP, TAU91; beta p 99.7 1.9E-15 6.4E-20 161.3 21.4 323 198-621 169-508 (524)
115 3ei3_B DNA damage-binding prot 99.7 2.5E-14 8.7E-19 147.3 28.3 289 196-589 79-382 (383)
116 3v7d_B Cell division control p 99.7 1.4E-13 4.8E-18 145.6 34.5 322 146-565 127-455 (464)
117 3dw8_B Serine/threonine-protei 99.7 3.4E-14 1.2E-18 149.4 29.5 321 195-562 33-437 (447)
118 4aow_A Guanine nucleotide-bind 99.7 8.3E-14 2.8E-18 140.5 31.0 287 134-524 33-339 (340)
119 3dwl_C Actin-related protein 2 99.7 1.9E-15 6.5E-20 155.3 18.9 231 332-619 14-271 (377)
120 2aq5_A Coronin-1A; WD40 repeat 99.7 1.1E-14 3.7E-19 151.2 24.6 282 195-557 39-329 (402)
121 1jof_A Carboxy-CIS,CIS-muconat 99.7 1.1E-13 3.9E-18 141.4 30.8 204 334-562 87-330 (365)
122 1yfq_A Cell cycle arrest prote 99.7 5.7E-14 2E-18 141.9 28.3 281 138-506 10-315 (342)
123 1pby_B Quinohemoprotein amine 99.7 2.7E-14 9.2E-19 143.9 25.6 233 333-617 37-297 (337)
124 2j04_A TAU60, YPL007P, hypothe 99.6 3E-15 1E-19 156.2 18.4 255 282-621 16-289 (588)
125 1sq9_A Antiviral protein SKI8; 99.6 2.1E-14 7E-19 148.6 24.8 282 236-590 10-396 (397)
126 4gga_A P55CDC, cell division c 99.6 2.1E-13 7.1E-18 142.4 31.9 270 196-563 111-386 (420)
127 3dm0_A Maltose-binding peripla 99.6 2.9E-14 1E-18 159.1 26.4 274 237-563 377-684 (694)
128 2aq5_A Coronin-1A; WD40 repeat 99.6 3.6E-14 1.2E-18 147.2 25.2 226 334-617 86-331 (402)
129 4e54_B DNA damage-binding prot 99.6 5E-14 1.7E-18 147.9 25.9 285 139-526 119-434 (435)
130 4gga_A P55CDC, cell division c 99.6 2.2E-13 7.4E-18 142.3 30.4 267 121-471 126-397 (420)
131 3odt_A Protein DOA1; ubiquitin 99.6 9.9E-14 3.4E-18 138.1 26.5 279 235-593 11-300 (313)
132 2vdu_B TRNA (guanine-N(7)-)-me 99.6 1.5E-13 5.1E-18 144.9 29.2 235 333-619 106-373 (450)
133 3dm0_A Maltose-binding peripla 99.6 1.7E-13 5.8E-18 152.9 31.2 284 134-521 377-692 (694)
134 3i2n_A WD repeat-containing pr 99.6 1.5E-14 5.1E-19 147.1 20.6 280 240-590 16-354 (357)
135 3odt_A Protein DOA1; ubiquitin 99.6 2E-13 6.7E-18 135.9 28.2 282 133-525 12-299 (313)
136 3s25_A Hypothetical 7-bladed b 99.6 7.8E-14 2.7E-18 137.0 24.0 264 3-369 24-299 (302)
137 2xe4_A Oligopeptidase B; hydro 99.6 6.1E-13 2.1E-17 148.9 32.8 295 200-531 124-467 (751)
138 3k26_A Polycomb protein EED; W 99.6 2.5E-13 8.5E-18 138.4 27.0 295 138-521 17-365 (366)
139 2hes_X YDR267CP; beta-propelle 99.6 7.7E-13 2.6E-17 133.2 30.1 231 334-621 63-319 (330)
140 4a11_B DNA excision repair pro 99.6 2.3E-13 7.8E-18 141.0 26.8 287 135-526 39-369 (408)
141 2hes_X YDR267CP; beta-propelle 99.6 1.2E-12 4.2E-17 131.7 31.2 280 196-563 20-319 (330)
142 3dwl_C Actin-related protein 2 99.6 5E-14 1.7E-18 144.6 21.4 253 194-522 15-281 (377)
143 1jmx_B Amine dehydrogenase; ox 99.6 4.8E-13 1.6E-17 135.4 28.4 282 143-527 3-330 (349)
144 4ggc_A P55CDC, cell division c 99.6 1.9E-12 6.5E-17 129.1 32.3 271 196-563 31-306 (318)
145 1jof_A Carboxy-CIS,CIS-muconat 99.6 1.2E-12 4.1E-17 133.8 31.3 272 122-470 18-342 (365)
146 2vdu_B TRNA (guanine-N(7)-)-me 99.6 2.2E-13 7.7E-18 143.6 26.3 191 374-618 104-326 (450)
147 2pm7_B Protein transport prote 99.6 7.2E-13 2.5E-17 131.2 28.3 242 239-563 6-276 (297)
148 3mmy_A MRNA export factor; mRN 99.6 3.8E-13 1.3E-17 137.1 27.0 275 134-505 34-337 (368)
149 3k26_A Polycomb protein EED; W 99.6 1.5E-13 5E-18 140.2 23.5 224 334-621 74-357 (366)
150 3jrp_A Fusion protein of prote 99.6 6E-13 2E-17 136.3 26.8 244 237-563 6-278 (379)
151 3v7d_B Cell division control p 99.6 4E-12 1.4E-16 134.4 34.0 298 197-618 127-451 (464)
152 3gre_A Serine/threonine-protei 99.6 4.4E-13 1.5E-17 140.6 26.0 257 196-527 69-364 (437)
153 2j04_B YDR362CP, TAU91; beta p 99.6 1.3E-13 4.4E-18 147.1 21.6 297 172-563 182-508 (524)
154 2xe4_A Oligopeptidase B; hydro 99.6 6.9E-13 2.3E-17 148.5 28.2 219 334-597 178-416 (751)
155 4ggc_A P55CDC, cell division c 99.6 3.8E-12 1.3E-16 127.0 30.7 266 121-470 46-316 (318)
156 3jrp_A Fusion protein of prote 99.6 1.1E-12 3.6E-17 134.4 26.2 228 334-619 16-276 (379)
157 2pm7_B Protein transport prote 99.5 1.4E-12 4.8E-17 129.1 25.8 230 334-621 14-276 (297)
158 4a11_B DNA excision repair pro 99.5 3.5E-12 1.2E-16 132.0 29.3 299 235-621 36-356 (408)
159 2oiz_A Aromatic amine dehydrog 99.5 4.8E-12 1.7E-16 128.9 29.8 317 200-612 13-360 (361)
160 3vu4_A KMHSV2; beta-propeller 99.5 2.1E-12 7E-17 131.5 26.4 270 135-505 15-327 (355)
161 1yfq_A Cell cycle arrest prote 99.5 8.3E-13 2.8E-17 133.3 23.3 290 240-621 9-314 (342)
162 3f3f_A Nucleoporin SEH1; struc 99.5 7.4E-12 2.5E-16 126.2 28.8 310 136-525 8-340 (351)
163 3gre_A Serine/threonine-protei 99.5 9.8E-13 3.3E-17 138.0 22.8 256 239-591 60-361 (437)
164 1qks_A Cytochrome CD1 nitrite 99.5 4.2E-11 1.4E-15 128.4 35.3 325 121-530 178-546 (567)
165 3s94_A LRP-6, low-density lipo 99.5 9.2E-09 3.1E-13 111.6 53.8 496 5-616 10-537 (619)
166 2oiz_A Aromatic amine dehydrog 99.5 1.1E-11 3.7E-16 126.3 28.9 317 148-555 12-361 (361)
167 2ovr_B FBW7, F-BOX/WD repeat p 99.5 4.2E-11 1.4E-15 125.8 34.4 307 146-589 124-442 (445)
168 3mmy_A MRNA export factor; mRN 99.5 7.2E-12 2.5E-16 127.5 27.7 273 195-564 44-338 (368)
169 1jmx_B Amine dehydrogenase; ox 99.5 1.7E-12 5.9E-17 131.3 22.8 230 335-617 5-312 (349)
170 2mad_H Methylamine dehydrogena 99.5 8.5E-11 2.9E-15 119.8 34.6 302 200-595 30-356 (373)
171 3vu4_A KMHSV2; beta-propeller 99.5 1.2E-11 4E-16 125.9 27.6 225 333-620 62-326 (355)
172 2ovr_B FBW7, F-BOX/WD repeat p 99.5 7.1E-11 2.4E-15 124.1 33.8 309 196-633 123-441 (445)
173 3bg1_A Protein SEC13 homolog; 99.5 3.4E-12 1.2E-16 127.6 22.1 241 239-563 10-284 (316)
174 1qks_A Cytochrome CD1 nitrite 99.5 7.3E-11 2.5E-15 126.5 33.6 362 144-595 158-544 (567)
175 3f3f_A Nucleoporin SEH1; struc 99.5 9.4E-12 3.2E-16 125.4 24.6 231 334-621 16-328 (351)
176 3lrv_A PRE-mRNA-splicing facto 99.5 5.5E-11 1.9E-15 120.3 30.1 177 334-563 130-324 (343)
177 3bg1_A Protein SEC13 homolog; 99.5 3E-12 1E-16 128.0 19.8 231 334-621 18-284 (316)
178 4a0p_A LRP6, LRP-6, low-densit 99.4 4.7E-08 1.6E-12 106.1 53.3 479 3-596 5-557 (628)
179 3jro_A Fusion protein of prote 99.4 9E-12 3.1E-16 139.9 24.5 228 334-619 14-274 (753)
180 3lrv_A PRE-mRNA-splicing facto 99.4 2.7E-11 9.2E-16 122.6 25.4 179 337-561 91-280 (343)
181 3sjl_D Methylamine dehydrogena 99.4 2.1E-10 7.1E-15 115.4 30.8 314 197-610 39-384 (386)
182 3jro_A Fusion protein of prote 99.4 1.2E-11 4E-16 139.0 24.2 243 238-563 5-276 (753)
183 2xyi_A Probable histone-bindin 99.4 1.2E-11 4.2E-16 129.4 22.4 234 333-619 132-399 (430)
184 2xyi_A Probable histone-bindin 99.4 5.8E-11 2E-15 124.2 25.7 190 333-562 185-399 (430)
185 3s94_A LRP-6, low-density lipo 99.4 1.3E-07 4.4E-12 102.6 52.4 469 18-597 61-559 (619)
186 2mad_H Methylamine dehydrogena 99.4 1.6E-09 5.3E-14 110.4 34.6 280 121-472 48-353 (373)
187 3c75_H MADH, methylamine dehyd 99.4 6.3E-10 2.1E-14 114.0 30.2 301 200-595 82-409 (426)
188 4a0p_A LRP6, LRP-6, low-densit 99.4 1.9E-07 6.6E-12 101.3 50.5 441 58-597 8-516 (628)
189 3sjl_D Methylamine dehydrogena 99.3 2.6E-09 9E-14 107.4 30.6 317 95-494 39-384 (386)
190 4gq1_A NUP37; propeller, trans 99.3 1.6E-10 5.6E-15 119.1 21.7 109 143-278 93-218 (393)
191 4gq1_A NUP37; propeller, trans 99.3 6.2E-11 2.1E-15 122.3 18.3 232 336-621 96-381 (393)
192 1p22_A F-BOX/WD-repeat protein 99.3 1.8E-09 6E-14 113.0 28.9 271 146-525 138-417 (435)
193 3c75_H MADH, methylamine dehyd 99.3 1.1E-09 3.9E-14 112.1 26.2 297 121-494 100-423 (426)
194 1p22_A F-BOX/WD-repeat protein 99.3 2.4E-09 8.2E-14 112.0 27.9 268 196-592 137-417 (435)
195 2w18_A PALB2, fancn, partner a 99.3 3.4E-09 1.2E-13 103.9 26.7 173 353-563 156-348 (356)
196 3g4e_A Regucalcin; six bladed 99.2 5E-10 1.7E-14 110.6 21.2 226 334-621 17-264 (297)
197 3e5z_A Putative gluconolactona 99.2 2E-09 6.9E-14 106.1 24.6 220 333-618 31-276 (296)
198 3e5z_A Putative gluconolactona 99.2 9.8E-09 3.4E-13 101.1 28.4 244 195-528 32-292 (296)
199 2dg1_A DRP35, lactonase; beta 99.2 2.4E-09 8.1E-14 107.5 23.4 231 334-620 49-301 (333)
200 2ghs_A AGR_C_1268P; regucalcin 99.2 2.5E-09 8.7E-14 107.0 23.3 226 333-621 52-294 (326)
201 3dr2_A Exported gluconolactona 99.2 2.2E-09 7.6E-14 106.4 22.2 226 333-618 48-296 (305)
202 2dg1_A DRP35, lactonase; beta 99.2 5.7E-09 1.9E-13 104.7 25.0 250 195-522 49-316 (333)
203 3dr2_A Exported gluconolactona 99.2 9.4E-09 3.2E-13 101.8 25.1 189 334-562 90-297 (305)
204 3g4e_A Regucalcin; six bladed 99.1 7.7E-09 2.6E-13 102.0 23.8 192 334-564 58-264 (297)
205 1npe_A Nidogen, entactin; glyc 99.1 9.8E-08 3.3E-12 92.4 30.0 220 333-612 39-263 (267)
206 2w18_A PALB2, fancn, partner a 99.1 2E-08 7E-13 98.4 24.6 178 399-621 155-348 (356)
207 3hrp_A Uncharacterized protein 99.1 2.3E-08 8E-13 103.2 26.0 233 334-620 135-400 (409)
208 1fwx_A Nitrous oxide reductase 99.1 1.3E-08 4.6E-13 106.5 23.6 294 195-530 89-439 (595)
209 2ghs_A AGR_C_1268P; regucalcin 99.1 2.5E-08 8.6E-13 99.7 24.1 189 334-564 94-294 (326)
210 1npe_A Nidogen, entactin; glyc 99.0 1E-07 3.5E-12 92.3 25.5 217 341-617 1-225 (267)
211 1mda_H Methylamine dehydrogena 99.0 2.5E-08 8.5E-13 100.5 20.7 280 121-482 47-356 (368)
212 1rwi_B Serine/threonine-protei 99.0 6.4E-08 2.2E-12 93.7 23.0 223 334-620 28-254 (270)
213 3dsm_A Uncharacterized protein 99.0 6.2E-08 2.1E-12 96.9 22.8 222 340-617 52-285 (328)
214 1mda_H Methylamine dehydrogena 98.9 8.7E-08 3E-12 96.5 22.3 288 216-597 47-355 (368)
215 3dsm_A Uncharacterized protein 98.9 9.6E-08 3.3E-12 95.6 21.3 206 333-596 87-309 (328)
216 1q7f_A NHL, brain tumor CG1071 98.9 3.2E-07 1.1E-11 89.6 24.3 225 334-618 34-269 (286)
217 2oit_A Nucleoporin 214KDA; NH2 98.9 4.9E-08 1.7E-12 101.7 18.0 204 373-620 37-261 (434)
218 2oit_A Nucleoporin 214KDA; NH2 98.9 8.8E-08 3E-12 99.8 20.0 220 333-590 40-279 (434)
219 3v64_C Agrin; beta propeller, 98.9 8.5E-07 2.9E-11 89.3 25.7 214 343-617 46-262 (349)
220 3v65_B Low-density lipoprotein 98.8 5.8E-07 2E-11 91.9 24.3 214 343-617 89-305 (386)
221 3v64_C Agrin; beta propeller, 98.8 2.3E-06 7.9E-11 86.1 27.6 219 334-612 77-300 (349)
222 3v65_B Low-density lipoprotein 98.8 2.2E-06 7.5E-11 87.6 27.6 219 334-612 120-343 (386)
223 3fvz_A Peptidyl-glycine alpha- 98.8 3.8E-07 1.3E-11 91.2 21.1 238 334-621 28-313 (329)
224 2ece_A 462AA long hypothetical 98.8 5E-06 1.7E-10 84.2 28.3 203 335-560 143-399 (462)
225 1fwx_A Nitrous oxide reductase 98.8 2.5E-07 8.5E-12 97.0 19.3 237 334-620 89-408 (595)
226 2ece_A 462AA long hypothetical 98.8 6.2E-06 2.1E-10 83.5 28.7 242 338-617 90-399 (462)
227 1ijq_A LDL receptor, low-densi 98.8 3.3E-06 1.1E-10 83.7 25.9 198 343-596 3-202 (316)
228 3hrp_A Uncharacterized protein 98.7 7.2E-07 2.5E-11 91.9 21.5 190 374-618 132-341 (409)
229 1rwi_B Serine/threonine-protei 98.7 2.8E-06 9.6E-11 81.9 24.4 194 333-591 70-266 (270)
230 1pjx_A Dfpase, DIISOPROPYLFLUO 98.7 1.5E-06 5.3E-11 85.8 23.0 227 333-619 21-288 (314)
231 1pjx_A Dfpase, DIISOPROPYLFLUO 98.7 1.6E-06 5.5E-11 85.7 22.7 201 334-589 75-299 (314)
232 3sov_A LRP-6, low-density lipo 98.7 3.9E-06 1.3E-10 83.0 24.8 196 343-597 6-205 (318)
233 2iwa_A Glutamine cyclotransfer 98.7 3.5E-06 1.2E-10 80.0 21.9 202 334-589 25-237 (266)
234 3fvz_A Peptidyl-glycine alpha- 98.7 1.3E-05 4.3E-10 80.0 27.2 204 334-590 95-323 (329)
235 1ijq_A LDL receptor, low-densi 98.7 2.8E-05 9.7E-10 76.9 29.1 206 333-597 33-247 (316)
236 3p5b_L Low density lipoprotein 98.6 8.2E-06 2.8E-10 83.7 25.4 199 343-597 85-285 (400)
237 1q7f_A NHL, brain tumor CG1071 98.6 1.1E-05 3.9E-10 78.4 24.5 182 334-560 81-268 (286)
238 3no2_A Uncharacterized protein 98.6 3.8E-06 1.3E-10 81.5 19.7 204 351-618 12-231 (276)
239 2p4o_A Hypothetical protein; p 98.6 1.1E-05 3.9E-10 79.5 23.3 223 334-619 36-278 (306)
240 3sov_A LRP-6, low-density lipo 98.5 2.9E-05 9.8E-10 76.8 25.5 204 334-597 39-247 (318)
241 2z2n_A Virginiamycin B lyase; 98.5 2.9E-05 9.8E-10 75.8 25.1 216 334-617 19-242 (299)
242 3p5b_L Low density lipoprotein 98.5 5.4E-05 1.8E-09 77.5 27.6 204 334-596 116-328 (400)
243 3m0c_C LDL receptor, low-densi 98.5 3E-05 1E-09 86.0 27.0 193 353-597 403-597 (791)
244 2qe8_A Uncharacterized protein 98.5 9.8E-06 3.4E-10 81.4 21.1 233 334-620 21-311 (343)
245 2qc5_A Streptogramin B lactona 98.5 6.1E-05 2.1E-09 73.4 26.5 215 335-618 67-290 (300)
246 3m0c_C LDL receptor, low-densi 98.5 5.5E-05 1.9E-09 83.9 28.7 206 334-597 428-641 (791)
247 2z2n_A Virginiamycin B lyase; 98.5 4.7E-05 1.6E-09 74.3 24.4 216 334-618 61-284 (299)
248 2qc5_A Streptogramin B lactona 98.4 7.8E-05 2.7E-09 72.7 24.9 217 334-618 24-248 (300)
249 3nol_A Glutamine cyclotransfer 98.4 3.1E-05 1.1E-09 72.6 18.7 188 335-562 48-245 (262)
250 1n7d_A LDL receptor, low-densi 98.3 5.1E-06 1.7E-10 91.6 15.7 205 333-596 409-622 (699)
251 2iwa_A Glutamine cyclotransfer 98.3 1.9E-05 6.6E-10 74.9 17.4 190 375-620 23-227 (266)
252 1n7d_A LDL receptor, low-densi 98.3 4.1E-06 1.4E-10 92.3 14.7 207 353-611 385-596 (699)
253 3tc9_A Hypothetical hydrolase; 98.3 0.00022 7.7E-09 73.6 25.0 158 333-522 140-301 (430)
254 3sre_A PON1, serum paraoxonase 98.3 3.5E-05 1.2E-09 76.6 17.8 171 352-560 81-284 (355)
255 2fp8_A Strictosidine synthase; 98.3 0.00023 8E-09 70.4 24.1 234 333-620 22-303 (322)
256 3mbr_X Glutamine cyclotransfer 98.2 0.00015 5.2E-09 67.4 20.7 198 335-588 26-234 (243)
257 4hw6_A Hypothetical protein, I 98.2 0.0004 1.4E-08 71.8 24.8 158 333-522 142-304 (433)
258 3qqz_A Putative uncharacterize 98.2 0.00072 2.5E-08 63.7 23.9 196 334-560 31-241 (255)
259 1kb0_A Quinohemoprotein alcoho 98.2 0.0037 1.3E-07 68.6 33.0 82 460-560 457-538 (677)
260 2p4o_A Hypothetical protein; p 98.1 0.00012 4.2E-09 71.9 19.0 187 373-618 32-230 (306)
261 3nok_A Glutaminyl cyclase; bet 98.1 0.00014 4.7E-09 68.2 17.9 182 341-562 64-255 (268)
262 3qqz_A Putative uncharacterize 98.1 0.00074 2.5E-08 63.6 22.4 198 373-617 27-241 (255)
263 3no2_A Uncharacterized protein 98.1 6.5E-05 2.2E-09 72.7 14.9 145 437-618 38-183 (276)
264 3kya_A Putative phosphatase; s 98.0 0.0012 4.2E-08 68.3 24.2 169 334-522 143-341 (496)
265 3nol_A Glutamine cyclotransfer 98.0 0.00048 1.6E-08 64.5 17.9 189 375-621 45-247 (262)
266 3tc9_A Hypothetical hydrolase; 97.9 0.00025 8.5E-09 73.3 17.7 161 374-589 138-301 (430)
267 2qe8_A Uncharacterized protein 97.9 0.0003 1E-08 70.4 16.5 193 334-562 71-310 (343)
268 2fp8_A Strictosidine synthase; 97.9 0.0022 7.4E-08 63.4 22.4 210 335-591 85-315 (322)
269 1kb0_A Quinohemoprotein alcoho 97.8 0.031 1E-06 61.3 32.7 79 513-617 457-537 (677)
270 1xip_A Nucleoporin NUP159; bet 97.8 0.00027 9.4E-09 71.2 14.8 183 374-619 39-233 (388)
271 3nok_A Glutaminyl cyclase; bet 97.8 0.00078 2.7E-08 63.1 16.3 186 375-621 57-257 (268)
272 3q7m_A Lipoprotein YFGL, BAMB; 97.8 0.043 1.5E-06 55.1 34.8 105 95-226 48-164 (376)
273 2ism_A Putative oxidoreductase 97.8 0.0035 1.2E-07 62.7 21.9 151 334-504 35-222 (352)
274 4hvt_A Ritya.17583.B, post-pro 97.7 0.0094 3.2E-07 65.2 26.5 262 250-530 137-437 (711)
275 3das_A Putative oxidoreductase 97.7 0.0013 4.5E-08 65.0 18.0 165 436-618 32-220 (347)
276 4hw6_A Hypothetical protein, I 97.7 0.0008 2.7E-08 69.5 16.5 160 374-589 140-304 (433)
277 3kya_A Putative phosphatase; s 97.7 0.00074 2.5E-08 70.0 16.0 165 374-589 140-341 (496)
278 3hxj_A Pyrrolo-quinoline quino 97.7 0.0044 1.5E-07 61.1 21.4 198 353-620 116-315 (330)
279 3das_A Putative oxidoreductase 97.7 0.019 6.6E-07 56.6 25.2 166 334-518 36-231 (347)
280 1yiq_A Quinohemoprotein alcoho 97.7 0.072 2.5E-06 58.4 32.6 82 460-560 455-536 (689)
281 4a2l_A BT_4663, two-component 97.6 0.14 4.9E-06 57.3 41.2 211 337-618 413-649 (795)
282 3a9g_A Putative uncharacterize 97.6 0.012 4E-07 58.9 23.4 241 334-618 33-330 (354)
283 3mbr_X Glutamine cyclotransfer 97.5 0.0069 2.4E-07 56.2 18.2 191 373-621 21-226 (243)
284 2ism_A Putative oxidoreductase 97.5 0.0023 7.8E-08 64.1 16.0 175 426-618 22-221 (352)
285 2g8s_A Glucose/sorbosone dehyd 97.5 0.0077 2.6E-07 60.2 19.7 158 334-504 22-217 (353)
286 2ad6_A Methanol dehydrogenase 97.4 0.18 6.1E-06 53.9 36.3 83 459-560 443-525 (571)
287 1xip_A Nucleoporin NUP159; bet 97.4 0.0034 1.2E-07 63.2 16.2 170 333-560 41-232 (388)
288 4a2l_A BT_4663, two-component 97.4 0.28 9.6E-06 54.9 36.9 201 354-617 377-603 (795)
289 1yiq_A Quinohemoprotein alcoho 97.4 0.25 8.5E-06 54.1 33.6 81 513-619 455-537 (689)
290 2ad6_A Methanol dehydrogenase 97.4 0.21 7.2E-06 53.3 33.8 82 512-619 443-526 (571)
291 3a9g_A Putative uncharacterize 97.3 0.0059 2E-07 61.1 16.8 164 436-618 29-216 (354)
292 2g8s_A Glucose/sorbosone dehyd 97.3 0.004 1.4E-07 62.3 15.3 173 436-618 18-216 (353)
293 1k3i_A Galactose oxidase precu 97.3 0.062 2.1E-06 58.7 25.8 139 127-276 173-321 (656)
294 3hxj_A Pyrrolo-quinoline quino 97.2 0.014 4.8E-07 57.3 18.3 136 437-619 138-274 (330)
295 1cru_A Protein (soluble quinop 97.1 0.0059 2E-07 63.3 14.6 181 426-617 18-245 (454)
296 3q7m_A Lipoprotein YFGL, BAMB; 97.1 0.27 9.3E-06 49.1 34.2 68 446-529 276-344 (376)
297 4hvt_A Ritya.17583.B, post-pro 96.9 0.076 2.6E-06 58.1 21.2 215 336-590 136-382 (711)
298 3amr_A 3-phytase; beta-propell 96.9 0.38 1.3E-05 47.0 24.7 142 353-521 49-209 (355)
299 3sre_A PON1, serum paraoxonase 96.8 0.063 2.2E-06 53.1 18.5 148 441-618 117-285 (355)
300 3ii7_A Kelch-like protein 7; p 96.8 0.21 7.1E-06 48.4 22.4 236 342-618 12-255 (306)
301 2hz6_A Endoplasmic reticulum t 96.6 0.0031 1E-07 63.7 7.5 144 340-525 8-152 (369)
302 2p9w_A MAL S 1 allergenic prot 96.6 0.16 5.5E-06 49.2 18.5 162 436-619 13-204 (334)
303 3v9f_A Two-component system se 96.5 1.5 5.1E-05 48.8 34.3 138 437-617 451-600 (781)
304 1w6s_A Methanol dehydrogenase 96.5 1.2 4.2E-05 47.5 37.1 83 459-560 452-534 (599)
305 1k3i_A Galactose oxidase precu 96.4 0.28 9.7E-06 53.4 22.2 119 334-472 190-326 (656)
306 1w6s_A Methanol dehydrogenase 96.3 1.6 5.3E-05 46.7 33.8 82 513-620 453-536 (599)
307 2vpj_A Kelch-like protein 12; 96.3 0.63 2.2E-05 44.7 21.5 223 353-618 30-261 (301)
308 1flg_A Protein (quinoprotein e 96.3 1.6 5.4E-05 46.6 33.9 83 512-620 465-549 (582)
309 2p9w_A MAL S 1 allergenic prot 96.2 0.29 9.9E-06 47.4 18.1 168 372-589 12-215 (334)
310 1kv9_A Type II quinohemoprotei 96.2 1.9 6.6E-05 46.8 33.7 79 460-557 438-516 (668)
311 2xn4_A Kelch-like protein 2; s 96.2 1 3.4E-05 43.3 22.3 201 353-596 76-283 (302)
312 2xn4_A Kelch-like protein 2; s 96.1 0.96 3.3E-05 43.4 22.0 224 354-618 30-259 (302)
313 1zgk_A Kelch-like ECH-associat 95.9 1 3.4E-05 43.5 21.0 224 353-618 38-270 (308)
314 2vpj_A Kelch-like protein 12; 95.8 0.97 3.3E-05 43.4 20.6 201 353-596 77-285 (301)
315 3v9f_A Two-component system se 95.7 3.3 0.00011 45.9 44.1 199 354-618 427-646 (781)
316 3sbq_A Nitrous-oxide reductase 95.7 1.3 4.5E-05 45.8 20.6 203 339-589 140-408 (638)
317 3ii7_A Kelch-like protein 7; p 95.7 0.82 2.8E-05 44.0 19.3 202 353-596 69-279 (306)
318 4asc_A Kelch repeat and BTB do 95.4 2.1 7.3E-05 41.3 21.2 213 354-597 67-285 (315)
319 2hz6_A Endoplasmic reticulum t 95.3 0.019 6.5E-07 57.8 6.1 178 4-226 9-194 (369)
320 1flg_A Protein (quinoprotein e 95.2 4 0.00014 43.5 39.3 83 459-560 465-547 (582)
321 1zgk_A Kelch-like ECH-associat 95.1 1.2 4.1E-05 43.0 18.3 200 354-596 90-294 (308)
322 1kv9_A Type II quinohemoprotei 95.1 4.8 0.00016 43.7 34.8 81 513-619 438-520 (668)
323 1cru_A Protein (soluble quinop 94.8 1.1 3.6E-05 46.2 17.7 157 334-503 31-246 (454)
324 4asc_A Kelch repeat and BTB do 94.8 3.1 0.00011 40.1 23.6 233 1-260 1-250 (315)
325 3amr_A 3-phytase; beta-propell 94.4 4.1 0.00014 39.8 22.1 181 174-409 51-262 (355)
326 2woz_A Kelch repeat and BTB do 94.3 2 6.8E-05 41.6 17.7 209 355-595 79-293 (318)
327 2wg3_C Hedgehog-interacting pr 94.1 0.92 3.1E-05 46.7 15.1 147 436-590 14-187 (463)
328 3q6k_A 43.2 kDa salivary prote 93.3 4.9 0.00017 39.8 18.1 160 342-562 170-343 (381)
329 2uvk_A YJHT; unknown function, 93.1 3 0.0001 41.1 16.8 169 460-640 168-348 (357)
330 2zwa_A Leucine carboxyl methyl 91.8 16 0.00055 39.7 21.7 207 353-595 411-641 (695)
331 1bpo_A Protein (clathrin); cla 90.8 15 0.0005 37.0 28.5 243 196-526 30-293 (494)
332 2xzh_A Clathrin heavy chain 1; 90.5 13 0.00044 35.8 27.7 243 196-526 31-294 (365)
333 3zwu_A Alkaline phosphatase PH 89.5 8.9 0.0003 40.5 16.1 70 488-564 480-553 (592)
334 2woz_A Kelch repeat and BTB do 88.6 17 0.0006 34.7 24.6 226 354-617 24-260 (318)
335 3pbp_A Nucleoporin NUP82; beta 88.5 22 0.00075 35.6 17.8 112 437-560 67-198 (452)
336 4a9v_A PHOX; hydrolase, beta-p 86.9 7.7 0.00026 40.5 13.2 70 487-564 479-553 (592)
337 2zwa_A Leucine carboxyl methyl 86.8 34 0.0012 37.1 19.5 150 446-617 451-614 (695)
338 2uvk_A YJHT; unknown function, 86.6 6.9 0.00024 38.3 12.9 65 513-596 285-349 (357)
339 2xbg_A YCF48-like protein; pho 85.7 26 0.00089 33.7 18.6 161 355-562 143-312 (327)
340 1xi4_A Clathrin heavy chain; a 85.0 67 0.0023 37.7 22.8 243 197-525 31-292 (1630)
341 3q6k_A 43.2 kDa salivary prote 84.0 35 0.0012 33.7 20.0 108 486-623 222-347 (381)
342 1tl2_A L10, protein (tachylect 83.8 4.9 0.00017 36.3 8.8 100 437-559 42-152 (236)
343 2wg3_C Hedgehog-interacting pr 81.1 46 0.0016 33.9 16.3 38 485-523 140-187 (463)
344 1tl2_A L10, protein (tachylect 80.5 5.5 0.00019 36.0 7.9 96 485-617 42-152 (236)
345 2xbg_A YCF48-like protein; pho 75.4 59 0.002 31.1 21.0 152 426-617 153-310 (327)
346 1xi4_A Clathrin heavy chain; a 74.8 1.2E+02 0.0041 35.7 18.3 208 330-591 66-291 (1630)
347 3hx6_A Type 4 fimbrial biogene 68.8 1.1E+02 0.0037 31.8 15.0 79 448-527 152-237 (570)
348 4a9v_A PHOX; hydrolase, beta-p 68.7 12 0.00042 39.0 7.9 58 334-392 480-550 (592)
349 3zwu_A Alkaline phosphatase PH 67.7 11 0.00039 39.7 7.7 57 334-391 480-549 (592)
350 3pbp_A Nucleoporin NUP82; beta 62.3 1.3E+02 0.0045 30.1 16.1 147 336-502 27-198 (452)
351 2xzh_A Clathrin heavy chain 1; 62.3 1.2E+02 0.0039 29.4 25.4 204 329-592 66-293 (365)
352 3ott_A Two-component system se 61.6 94 0.0032 33.9 14.3 136 438-617 474-615 (758)
353 4eqa_C PA1845 protein, putativ 58.1 58 0.002 24.5 8.1 57 460-525 47-104 (153)
354 3sbq_A Nitrous-oxide reductase 57.2 1.9E+02 0.0064 30.2 32.0 142 372-530 322-486 (638)
355 3ott_A Two-component system se 56.3 2.2E+02 0.0076 30.8 20.0 135 439-618 149-297 (758)
356 3vpj_E TSE1-specific immunity 51.8 84 0.0029 24.6 8.1 56 461-525 87-143 (192)
357 4eqa_C PA1845 protein, putativ 50.1 79 0.0027 23.8 10.0 78 513-614 47-124 (153)
358 3vpj_E TSE1-specific immunity 48.4 96 0.0033 24.2 9.9 78 513-614 86-163 (192)
359 1bpo_A Protein (clathrin); cla 29.1 4.6E+02 0.016 26.4 30.4 129 121-276 49-186 (494)
360 2be1_A Serine/threonine-protei 28.7 76 0.0026 30.7 5.7 13 581-593 122-134 (339)
361 3hx6_A Type 4 fimbrial biogene 24.0 2.9E+02 0.0099 28.7 9.2 70 445-525 204-287 (570)
No 1
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1.5e-35 Score=346.14 Aligned_cols=523 Identities=14% Similarity=0.109 Sum_probs=348.6
Q ss_pred cceEEEEeecCCceeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEcc---CCCcceEEEcCCCCc
Q 039497 4 KGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISER---SGSPRIYQTRPGSSK 80 (642)
Q Consensus 4 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~---~g~~~l~~~~~~g~~ 80 (642)
++.|+|+ +.++||++++.| +++++||.|...+..|+|| |||++|||.+.+ ++..+||+++..+..
T Consensus 24 ~~~iaf~------~~~~l~~~~~~g-----g~~~~lt~~~~~v~~~~~S-PDG~~la~~s~~~~~~~~~~i~~~d~~~g~ 91 (1045)
T 1k32_A 24 GDRIIFV------CCDDLWEHDLKS-----GSTRKIVSNLGVINNARFF-PDGRKIAIRVMRGSSLNTADLYFYNGENGE 91 (1045)
T ss_dssp TTEEEEE------ETTEEEEEETTT-----CCEEEEECSSSEEEEEEEC-TTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred CCEEEEE------ECCcEEEEECCC-----CcEEEeeeCCCcccCeEEC-CCCCEEEEEEeeccCCCCCeEEEEECCCCC
Confidence 5789999 557999999999 9999999999999999999 999999999877 577789999766654
Q ss_pred ccccCCCCCCc-----ccccccc--CCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcE
Q 039497 81 TELLPSIPCSL-----FHDRPVA--RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKF 153 (642)
Q Consensus 81 ~~~~~~~~~~~-----~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~ 153 (642)
...+....... ....+.| +|+ ++|+...+.. .....+||.+++.+++.++|+..... ..+||| | .
T Consensus 92 ~~~lt~~~~~~~~~~~~~~~~~~SpDg~-ll~~~~~~~~---~~~~~~l~~~~~~~g~~~~l~~~~~~--~~~~sp-G-~ 163 (1045)
T 1k32_A 92 IKRITYFSGKSTGRRMFTDVAGFDPDGN-LIISTDAMQP---FSSMTCLYRVENDGINFVPLNLGPAT--HILFAD-G-R 163 (1045)
T ss_dssp EEECCCCCEEEETTEECSEEEEECTTCC-EEEEECTTSS---STTCCEEEEEEGGGTEEEECCSCSCS--EEEEET-T-E
T ss_pred eEEcccCCCcccccccccccccCCCCCE-EEEEECCcCC---CcccceEEEEECCCCCeEEecCCCcc--eeeeCC-C-E
Confidence 44554322111 0023344 555 8887764321 11123799999999999999876543 467999 8 6
Q ss_pred EEEEecCC--CCCCCCCCCCeeeEEEEEecCCCceeEeecCC--CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccc
Q 039497 154 IAVASYES--RPWPGEFHELNTDIVVFQESDPNKRVIVCERG--GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFL 229 (642)
Q Consensus 154 la~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~ 229 (642)
|+...... ..|..+.......||+.+.. ++.+++..... ..+.|++| +++|+. ..++..+||.++..++
T Consensus 164 l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~-~~~~~l~~~~~~v~~~~~s~d-~l~~~~-~~dg~~~l~~~~~~g~---- 236 (1045)
T 1k32_A 164 RVIGRNTFELPHWKGYRGGTRGKIWIEVNS-GAFKKIVDMSTHVSSPVIVGH-RIYFIT-DIDGFGQIYSTDLDGK---- 236 (1045)
T ss_dssp EEEEESCSCCTTSTTCCSTTCCEEEEEEET-TEEEEEECCSSCCEEEEEETT-EEEEEE-CTTSSCEEEEEETTSC----
T ss_pred EEEeccCCCccccccccCCCcCCEEEECCC-CCeEECcCCCCcccceEEeCC-EEEEEE-eccCceEEEEEeCCCC----
Confidence 66654322 24555555567788887765 66677743333 36799999 777777 5678889999998876
Q ss_pred cCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeec------CC------------CCcccCCeec-
Q 039497 230 GFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL------NP------------NFHHYNPFVS- 290 (642)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~------~~------------~~~~~~~~~s- 290 (642)
...+++.+. ....++|||||++|++.. ...|++|++.. .. ...+..+.||
T Consensus 237 ----~~~~l~~~~-~~~~~~~SpDG~~la~~~------~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~ 305 (1045)
T 1k32_A 237 ----DLRKHTSFT-DYYPRHLNTDGRRILFSK------GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSP 305 (1045)
T ss_dssp ----SCEECCCCC-SSCEEEEEESSSCEEEEE------TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEE
T ss_pred ----cceEecCCC-CcceeeEcCCCCEEEEEe------CCEEEEecCCceEeeeeccCcccccccccccccccceeeecC
Confidence 567776654 344578999999999963 23788888611 01 1135678999
Q ss_pred CCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeee---CCCccEEcCCCCEEEEEecCCCceeEE-EEECCCCCe
Q 039497 291 ANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRL---NGSFPSFSPDGGLIVFNHDFELNAGIK-IAKSDGSKR 366 (642)
Q Consensus 291 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~~~l~-~~d~~~~~~ 366 (642)
|||++|++.. .+ .+++..+.... ...+... ....+.|+ ||++|++.+. ...|| ++++++++.
T Consensus 306 pdG~~la~~~-~~--------~i~~~~~~~~~-~~~~~~~~~~~~~~~~~s-dg~~l~~~s~---~~~l~~~~d~~~~~~ 371 (1045)
T 1k32_A 306 LDGDLIAFVS-RG--------QAFIQDVSGTY-VLKVPEPLRIRYVRRGGD-TKVAFIHGTR---EGDFLGIYDYRTGKA 371 (1045)
T ss_dssp CGGGCEEEEE-TT--------EEEEECTTSSB-EEECSCCSCEEEEEECSS-SEEEEEEEET---TEEEEEEEETTTCCE
T ss_pred CCCCEEEEEE-cC--------EEEEEcCCCCc-eEEccCCCcceEEeeeEc-CCCeEEEEEC---CCceEEEEECCCCCc
Confidence 9999999985 11 22333333221 1111111 12356899 9999999875 57899 999998887
Q ss_pred eEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc-ccCCCCccCcEEC
Q 039497 367 WTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT-KEETGNNAFPSCS 444 (642)
Q Consensus 367 ~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~S 444 (642)
..+.. ...+..+.|||||++|++... +..+++|++.. + +...+. .+. ..+..++||
T Consensus 372 ~~l~~~~~~~~~~~~SpDG~~la~~~~-------~~~v~~~d~~t---------g-----~~~~~~~~~~-~~v~~~~~S 429 (1045)
T 1k32_A 372 EKFEENLGNVFAMGVDRNGKFAVVAND-------RFEIMTVDLET---------G-----KPTVIERSRE-AMITDFTIS 429 (1045)
T ss_dssp EECCCCCCSEEEEEECTTSSEEEEEET-------TSEEEEEETTT---------C-----CEEEEEECSS-SCCCCEEEC
T ss_pred eEecCCccceeeeEECCCCCEEEEECC-------CCeEEEEECCC---------C-----ceEEeccCCC-CCccceEEC
Confidence 77664 345778999999999998874 45777777643 3 444444 333 566789999
Q ss_pred CCCCeEEEEeCCC-------CceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCC---------
Q 039497 445 PDGKFLVFRSGRS-------GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD--------- 508 (642)
Q Consensus 445 pDg~~l~~~~~~~-------g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~--------- 508 (642)
|||++|++.+... ....|++||+.+++ +..++.+......+.|+|||++|++.+.+....
T Consensus 430 pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~----~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~ 505 (1045)
T 1k32_A 430 DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK----IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNF 505 (1045)
T ss_dssp TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE----EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCE
T ss_pred CCCCeEEEEecCccccccCCCCCeEEEEECCCCc----EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcccc
Confidence 9999999987532 34689999999887 488887766677899999999999998754310
Q ss_pred -CCCceeEEEEeCCCCceEE------------------------eeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 509 -NVEAFSLYVIKPDGSGLRR------------------------IHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 509 -~~~~~~l~~~d~~~~~~~~------------------------l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
......++.+-+....... .......+ .+..+.+||||+.++.....+
T Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~-------~~~~~~~s~dg~~~~~~~~~g 578 (1045)
T 1k32_A 506 SFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPG-------DYRMIIPLESSILIYSVPVHG 578 (1045)
T ss_dssp ECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCB-------CEEEEEECSSEEEEEECCCCC
T ss_pred ccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCC-------ChhheEEcCCCeEEEEecccC
Confidence 0011223333322111100 00001111 456789999997666422100
Q ss_pred CcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeec
Q 039497 564 AVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKL 618 (642)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~ 618 (642)
... +.-..+.....||.||+.+++.+.+. ..+..++|||||++++...
T Consensus 579 ~~~----~~~~~~~~~~~l~~~d~~~~~~~~l~---~~v~~~~~S~DG~~l~~~~ 626 (1045)
T 1k32_A 579 EFA----AYYQGAPEKGVLLKYDVKTRKVTEVK---NNLTDLRLSADRKTVMVRK 626 (1045)
T ss_dssp SHH----HHHHCCCCCEEEEEEETTTCCEEEEE---EEEEEEEECTTSCEEEEEE
T ss_pred ccc----ccccccCCCceEEEEECCCCcEEEee---cCcceEEECCCCCEEEEEc
Confidence 000 00000001238999999998877776 2245779999999887654
No 2
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=4.9e-32 Score=316.51 Aligned_cols=428 Identities=12% Similarity=0.100 Sum_probs=303.5
Q ss_pred cccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCee
Q 039497 94 DRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNT 173 (642)
Q Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~ 173 (642)
..|.++++.|+|.+.. +||++++.+++.++|+.+......|+|||||++|||.+.... ..+..
T Consensus 18 ~~~~~S~~~iaf~~~~-----------~l~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~------~~~~~ 80 (1045)
T 1k32_A 18 LNPDIHGDRIIFVCCD-----------DLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGS------SLNTA 80 (1045)
T ss_dssp EEEEEETTEEEEEETT-----------EEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEEST------TCCEE
T ss_pred eCcEEeCCEEEEEECC-----------cEEEEECCCCcEEEeeeCCCcccCeEECCCCCEEEEEEeecc------CCCCC
Confidence 3566677899998863 699999999999999998888889999999999999876410 01467
Q ss_pred eEEEEEecCCCceeEeecCC---------CcceEeeCCeEEEEEecCC----CceEEEEEecCCCcccccCCccceeeCC
Q 039497 174 DIVVFQESDPNKRVIVCERG---------GWPTWSGDSTIYFHRQADD----GWWSIFRVSFPENLEFLGFPIAPTRVTP 240 (642)
Q Consensus 174 ~l~~~~~~~g~~~~l~~~~~---------~~~~wspdg~~~~~~~~~~----g~~~l~~~~~~~~~~~~~~~~~~~~l~~ 240 (642)
.||+|++.+++.++++.... ..++|||||+++|+.. .+ +...||.+++.++ ...+++.
T Consensus 81 ~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~-~~~~~~~~~~l~~~~~~~g--------~~~~l~~ 151 (1045)
T 1k32_A 81 DLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD-AMQPFSSMTCLYRVENDGI--------NFVPLNL 151 (1045)
T ss_dssp EEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC-TTSSSTTCCEEEEEEGGGT--------EEEECCS
T ss_pred eEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEEC-CcCCCcccceEEEEECCCC--------CeEEecC
Confidence 89999999998888876443 2469999999777773 22 4568999999887 5566665
Q ss_pred CCCccccceeecCCcEEEEEEec---------cCCceeeEEEEEe------ecCCCCcccCCeecCCCCEEEEEEeecCC
Q 039497 241 PGVHCFTPAAFHDGKRLAVATRR---------KNRNFRHIEIYDL------TLNPNFHHYNPFVSANSEFIGYHRFRGES 305 (642)
Q Consensus 241 ~~~~~~~~~~SpdG~~l~~~~~~---------~~~~~~~i~~~d~------~~~~~~~~~~~~~spDg~~l~~~~~~~~~ 305 (642)
.. ....+||| | .++..... .+.....+|+.+. ...+...+..+.|++| .++|......
T Consensus 152 ~~--~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg- 224 (1045)
T 1k32_A 152 GP--ATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH--RIYFITDIDG- 224 (1045)
T ss_dssp CS--CSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT--EEEEEECTTS-
T ss_pred CC--cceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC--EEEEEEeccC-
Confidence 53 34567999 8 55553311 1223345555432 2345566778899988 6777654322
Q ss_pred CCCCcccceEeeccCCC-ceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeec------------
Q 039497 306 TEGQSTIPHLEPVASPV-KELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD------------ 372 (642)
Q Consensus 306 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~------------ 372 (642)
...+|.....+.. ..+... .....+.|||||++|+|.. ...|+++++++.....+...
T Consensus 225 ----~~~l~~~~~~g~~~~~l~~~-~~~~~~~~SpDG~~la~~~----~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~ 295 (1045)
T 1k32_A 225 ----FGQIYSTDLDGKDLRKHTSF-TDYYPRHLNTDGRRILFSK----GGSIYIFNPDTEKIEKIEIGDLESPEDRIISI 295 (1045)
T ss_dssp ----SCEEEEEETTSCSCEECCCC-CSSCEEEEEESSSCEEEEE----TTEEEEECTTTCCEEECCCCCCCBCCSEEEEC
T ss_pred ----ceEEEEEeCCCCcceEecCC-CCcceeeEcCCCCEEEEEe----CCEEEEecCCceEeeeeccCcccccccccccc
Confidence 2455665554432 222111 1223568999999999975 36899999865554432221
Q ss_pred CCceeeeee-cCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCC-CccCcEECCCCCeE
Q 039497 373 RTAFYNSWS-PTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETG-NNAFPSCSPDGKFL 450 (642)
Q Consensus 373 ~~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~SpDg~~l 450 (642)
..+..+.|| |||++|++.. ...+.++++.. + ....+.... . .+..+.|| ||+.|
T Consensus 296 ~~v~~~~~S~pdG~~la~~~--------~~~i~~~~~~~---------~-----~~~~~~~~~-~~~~~~~~~s-dg~~l 351 (1045)
T 1k32_A 296 PSKFAEDFSPLDGDLIAFVS--------RGQAFIQDVSG---------T-----YVLKVPEPL-RIRYVRRGGD-TKVAF 351 (1045)
T ss_dssp GGGGEEEEEECGGGCEEEEE--------TTEEEEECTTS---------S-----BEEECSCCS-CEEEEEECSS-SEEEE
T ss_pred cccceeeecCCCCCEEEEEE--------cCEEEEEcCCC---------C-----ceEEccCCC-cceEEeeeEc-CCCeE
Confidence 147889999 9999999987 34555554422 3 455566555 4 67789999 99999
Q ss_pred EEEeCCCCceeEE-EEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEee
Q 039497 451 VFRSGRSGHKNLF-VLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH 529 (642)
Q Consensus 451 ~~~~~~~g~~~l~-~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 529 (642)
++.+. ...|| ++++.+++. +.++.+...+..++|||||++|++.+.+. .|++||+++++.+.+.
T Consensus 352 ~~~s~---~~~l~~~~d~~~~~~----~~l~~~~~~~~~~~~SpDG~~la~~~~~~--------~v~~~d~~tg~~~~~~ 416 (1045)
T 1k32_A 352 IHGTR---EGDFLGIYDYRTGKA----EKFEENLGNVFAMGVDRNGKFAVVANDRF--------EIMTVDLETGKPTVIE 416 (1045)
T ss_dssp EEEET---TEEEEEEEETTTCCE----EECCCCCCSEEEEEECTTSSEEEEEETTS--------EEEEEETTTCCEEEEE
T ss_pred EEEEC---CCceEEEEECCCCCc----eEecCCccceeeeEECCCCCEEEEECCCC--------eEEEEECCCCceEEec
Confidence 99886 45899 999998774 77775556678899999999999988764 3999999999888776
Q ss_pred ecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEec
Q 039497 530 VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609 (642)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~ 609 (642)
.. ..+ .+..++|||||++|++.+.+.... ........|++|++.++++..++.+......++|||
T Consensus 417 ~~-~~~-------~v~~~~~SpDG~~la~~~~~~~~~-------~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~sp 481 (1045)
T 1k32_A 417 RS-REA-------MITDFTISDNSRFIAYGFPLKHGE-------TDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDA 481 (1045)
T ss_dssp EC-SSS-------CCCCEEECTTSCEEEEEEEECSST-------TCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECT
T ss_pred cC-CCC-------CccceEECCCCCeEEEEecCcccc-------ccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcC
Confidence 42 333 457899999999999987653000 000012389999999988888988776677899999
Q ss_pred CCceEEee
Q 039497 610 GNQLDLGK 617 (642)
Q Consensus 610 dg~~~~~~ 617 (642)
||++++..
T Consensus 482 dG~~l~~~ 489 (1045)
T 1k32_A 482 DSKNLYYL 489 (1045)
T ss_dssp TSCEEEEE
T ss_pred CCCEEEEE
Confidence 99877544
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.6e-30 Score=281.82 Aligned_cols=480 Identities=17% Similarity=0.131 Sum_probs=324.4
Q ss_pred eeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCccccccc
Q 039497 18 GFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPV 97 (642)
Q Consensus 18 ~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~ 97 (642)
.+.|.+.++.| .....+..|...+...+|+ |||++|+..+ .++...+|... ....................
T Consensus 78 d~~i~vWd~~~-----~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~-~d~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~ 148 (577)
T 2ymu_A 78 DKTVKLWNRNG-----QLLQTLTGHSSSVRGVAFS-PDGQTIASAS-DDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFS 148 (577)
T ss_dssp TSCEEEEETTS-----CEEEEECCCSSCEEEEEEC-TTSSEEEEEE-TTSCEEEEETT--CCEEEEECCCSSCEEEEEEC
T ss_pred CCEEEEEECCC-----CEEEEEECCCCCEEEEEEC-CCCCEEEEEc-CCCceeecccc--cceeeeccCCCCceeeeeee
Confidence 34566666777 7788999999999999999 9999999554 46777777641 11111111111111111112
Q ss_pred cCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEE
Q 039497 98 ARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVV 177 (642)
Q Consensus 98 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~ 177 (642)
.++..++...... .+........................++|||++|+....+. .|.+
T Consensus 149 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------------~v~~ 206 (577)
T 2ymu_A 149 PDGQTIASASDDK----------TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK------------TVKL 206 (577)
T ss_dssp TTSSCEEEEETTS----------EEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTS------------EEEE
T ss_pred cCCccceeccccc----------ceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCC------------EEEE
Confidence 2444444433321 23333444444445555555556688999999999887665 6888
Q ss_pred EEecCCCceeEeecCCC--cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCc
Q 039497 178 FQESDPNKRVIVCERGG--WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGK 255 (642)
Q Consensus 178 ~~~~~g~~~~l~~~~~~--~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~ 255 (642)
|+..+.....+...... .++|+||++.+++. ..++...+| +..+. ....+..+...+..++|+|||+
T Consensus 207 w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~~d~~i~~w--~~~~~--------~~~~~~~~~~~v~~v~~~~d~~ 275 (577)
T 2ymu_A 207 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASA-SDDKTVKLW--NRNGQ--------LLQTLTGHSSSVNGVAFRPDGQ 275 (577)
T ss_dssp ECTTSCEEEEEECCSSCEEEEEECTTSSCEEEE-ETTSCEEEE--CTTSC--------EEEEECCCSSCEEEEEECTTSS
T ss_pred EeCCCcEEEEEecCCCCEEEEEECCCCCEEEEE-eCCCEEEEE--eCCCC--------EEEEEecCCCCEEEEEEcCCCC
Confidence 88654333334333332 45999999877776 456755555 44443 4556666666778889999999
Q ss_pred EEEEEEeccCCceeeEEEEEe-------ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEe
Q 039497 256 RLAVATRRKNRNFRHIEIYDL-------TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRML 328 (642)
Q Consensus 256 ~l~~~~~~~~~~~~~i~~~d~-------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (642)
.|+.....+ .+.+|+. ...+...+...+++||++.|+....++. ..+| .+... .+...
T Consensus 276 ~l~~~~~d~-----~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~------i~~w--~~~~~--~~~~~ 340 (577)
T 2ymu_A 276 TIASASDDK-----TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT------VKLW--NRNGQ--HLQTL 340 (577)
T ss_dssp EEEEEETTS-----CEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC------EEEE--ETTSC--EEEEE
T ss_pred EEEEEeCCC-----EEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCe------EEEE--eCCCC--eeEEE
Confidence 998865544 7888886 2344555667789999999988754443 2233 22222 11111
Q ss_pred ee---CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEE
Q 039497 329 RL---NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQ 404 (642)
Q Consensus 329 ~~---~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 404 (642)
.. ......|+|||+.|+.... ...|.+++..+.....+.. ...+..+.|+|||+.|+..+. ++.++
T Consensus 341 ~~~~~~v~~~~~s~~g~~l~~~~~---dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~-------d~~v~ 410 (577)
T 2ymu_A 341 TGHSSSVWGVAFSPDGQTIASASD---DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD-------DKTVK 410 (577)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEET---TSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEET-------TSEEE
T ss_pred eCCCCCEEEEEECCCCCEEEEEeC---CCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeC-------CCEEE
Confidence 11 1134689999999888654 3567788876655444443 566889999999999988874 67888
Q ss_pred EEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC
Q 039497 405 IARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW 484 (642)
Q Consensus 405 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~ 484 (642)
+|+... . ....+..+. ..+..++|+||+++|+..+. +..|.+|+.. ++. +..+..+..
T Consensus 411 ~~~~~~---------~-----~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~---d~~v~~w~~~-~~~---~~~~~~~~~ 468 (577)
T 2ymu_A 411 LWNRNG---------Q-----LLQTLTGHS-SSVWGVAFSPDDQTIASASD---DKTVKLWNRN-GQL---LQTLTGHSS 468 (577)
T ss_dssp EECTTC---------C-----EEEEEECCS-SCEEEEEECTTSSEEEEEET---TSEEEEEETT-SCE---EEEEECCSS
T ss_pred EEeCCC---------C-----EEEEecCCC-CCeEEEEECCCCCEEEEEcC---CCEEEEEECC-CCE---EEEEcCCCC
Confidence 887422 2 455566555 67788999999999988774 3478899976 444 577777777
Q ss_pred cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497 485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA 564 (642)
Q Consensus 485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~ 564 (642)
.+..++|+|||++|+..+.++. |++||..+...+.+. ++.. .+..++|||||++|+..+.++
T Consensus 469 ~v~~~~~spd~~~las~~~d~~--------i~iw~~~~~~~~~~~--~h~~-------~v~~l~~s~dg~~l~s~~~dg- 530 (577)
T 2ymu_A 469 SVRGVAFSPDGQTIASASDDKT--------VKLWNRNGQLLQTLT--GHSS-------SVRGVAFSPDGQTIASASDDK- 530 (577)
T ss_dssp CEEEEEECTTSCEEEEEETTSE--------EEEEETTSCEEEEEE--CCSS-------CEEEEEECTTSSCEEEEETTS-
T ss_pred CEEEEEEcCCCCEEEEEeCCCE--------EEEEcCCCCEEEEEe--CCCC-------CEEEEEEcCCCCEEEEEECcC-
Confidence 7888999999999998887654 899998765555443 3444 578899999999988777654
Q ss_pred cccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeecCC
Q 039497 565 VMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRL 620 (642)
Q Consensus 565 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~ 620 (642)
.|.+||..+..+..+..+...+..++|+|||++|++....
T Consensus 531 ----------------~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D 570 (577)
T 2ymu_A 531 ----------------TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSD 570 (577)
T ss_dssp ----------------EEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred ----------------EEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 7888898887788888888888899999999999886543
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.6e-29 Score=276.75 Aligned_cols=480 Identities=17% Similarity=0.120 Sum_probs=326.4
Q ss_pred eeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCccccccc
Q 039497 18 GFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPV 97 (642)
Q Consensus 18 ~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~ 97 (642)
++.|.+.+..| ...++|.+|.+.+...+|| |||++||.. ..++...||.. .++....+.........-..+
T Consensus 37 d~~v~iWd~~~-----~~~~~l~gh~~~V~~l~fs-pdg~~las~-~~d~~i~vWd~--~~~~~~~~~~~~~~v~~~~~s 107 (577)
T 2ymu_A 37 DKTVKLWNRNG-----QLLQTLTGHSSSVWGVAFS-PDGQTIASA-SDDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFS 107 (577)
T ss_dssp TSEEEEECTTS-----CEEEEEECCSSCEEEEEEC-TTSSEEEEE-ETTSCEEEEET--TSCEEEEECCCSSCEEEEEEC
T ss_pred CCEEEEEECCC-----CEEEEEeCCCCCEEEEEEC-CCCCEEEEE-eCCCEEEEEEC--CCCEEEEEECCCCCEEEEEEC
Confidence 34566666776 6788999999999999999 999999954 45788888874 343222222111111100122
Q ss_pred cCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEE
Q 039497 98 ARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVV 177 (642)
Q Consensus 98 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~ 177 (642)
.+++.|+...... .+...+........+...........++||++.++...... .+.+
T Consensus 108 ~d~~~l~~~~~d~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------------~~~~ 165 (577)
T 2ymu_A 108 PDGQTIASASDDK----------TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK------------TVKL 165 (577)
T ss_dssp TTSSEEEEEETTS----------CEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTS------------EEEE
T ss_pred CCCCEEEEEcCCC----------ceeecccccceeeeccCCCCceeeeeeecCCccceeccccc------------ceec
Confidence 2555665544332 34444666666666665555566788999999999877654 3445
Q ss_pred EEecCCCceeEeecCCC--cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCc
Q 039497 178 FQESDPNKRVIVCERGG--WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGK 255 (642)
Q Consensus 178 ~~~~~g~~~~l~~~~~~--~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~ 255 (642)
+................ ...|+||+.++++. ..++.. ..++..+. ....+..+...+..++|+|||+
T Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v--~~w~~~~~--------~~~~~~~~~~~v~~~~~s~dg~ 234 (577)
T 2ymu_A 166 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA-SDDKTV--KLWNRNGQ--------LLQTLTGHSSSVRGVAFSPDGQ 234 (577)
T ss_dssp ECTTSCEEEEEECCSSCEEEEEECTTSSCEEEE-ETTSEE--EEECTTSC--------EEEEEECCSSCEEEEEECTTSS
T ss_pred cccceeeeeeccCCCcceeeeeecCCCCEEEEE-cCCCEE--EEEeCCCc--------EEEEEecCCCCEEEEEECCCCC
Confidence 54433322222222222 35899999877776 456744 44455443 4556666666778889999999
Q ss_pred EEEEEEeccCCceeeEEEEEe-------ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEe
Q 039497 256 RLAVATRRKNRNFRHIEIYDL-------TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRML 328 (642)
Q Consensus 256 ~l~~~~~~~~~~~~~i~~~d~-------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (642)
+|+.....+ .+.+||. ...+...+....|+|||+.|+....++. ..+| ..... .+...
T Consensus 235 ~l~~~~~d~-----~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~------i~~w--~~~~~--~~~~~ 299 (577)
T 2ymu_A 235 TIASASDDK-----TVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKT------VKLW--NRNGQ--LLQTL 299 (577)
T ss_dssp CEEEEETTS-----CEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC------EEEE--ETTSC--EEEEE
T ss_pred EEEEEeCCC-----EEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCE------EEEE--eCCCc--EEEEE
Confidence 998865443 7888886 2344555667889999999888754433 2222 22222 11111
Q ss_pred ee---CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEE
Q 039497 329 RL---NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQ 404 (642)
Q Consensus 329 ~~---~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 404 (642)
.. ......|+||++.|+.... ...|.++++++.....+.. ...+..+.|+|||+.|+.... ++.++
T Consensus 300 ~~h~~~v~~~~~~~~~~~l~t~~~---d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-------dg~v~ 369 (577)
T 2ymu_A 300 TGHSSSVWGVAFSPDGQTIASASD---DKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASD-------DKTVK 369 (577)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEET-------TSEEE
T ss_pred ecCCCCeEEEEECCCCCEEEEEeC---CCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeC-------CCEEE
Confidence 11 1134689999999888664 3567788888776555543 556788999999999988774 67888
Q ss_pred EEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC
Q 039497 405 IARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW 484 (642)
Q Consensus 405 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~ 484 (642)
+|+... . ....+..+. ..+..++|+|||++|+..+.+ ..|.+|+.. ++. +..+..+..
T Consensus 370 ~~~~~~---------~-----~~~~~~~~~-~~v~~~~~s~dg~~l~~~~~d---~~v~~~~~~-~~~---~~~~~~~~~ 427 (577)
T 2ymu_A 370 LWNRNG---------Q-----LLQTLTGHS-SSVRGVAFSPDGQTIASASDD---KTVKLWNRN-GQL---LQTLTGHSS 427 (577)
T ss_dssp EEETTC---------C-----EEEEEECCS-SCEEEEEECTTSSCEEEEETT---SEEEEECTT-CCE---EEEEECCSS
T ss_pred EEcCCC---------C-----EEEEecCCC-CCeEEEEECCCCCEEEEEeCC---CEEEEEeCC-CCE---EEEecCCCC
Confidence 887422 2 455555555 677889999999999887743 378889865 554 567777777
Q ss_pred cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497 485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA 564 (642)
Q Consensus 485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~ 564 (642)
.+..++|+||+++|+..+.++. |.+||+.+.....+. .+.. .+..++|||||++|+..+.++
T Consensus 428 ~v~~~~~s~d~~~l~~~~~d~~--------v~~w~~~~~~~~~~~--~~~~-------~v~~~~~spd~~~las~~~d~- 489 (577)
T 2ymu_A 428 SVWGVAFSPDDQTIASASDDKT--------VKLWNRNGQLLQTLT--GHSS-------SVRGVAFSPDGQTIASASDDK- 489 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSE--------EEEEETTSCEEEEEE--CCSS-------CEEEEEECTTSCEEEEEETTS-
T ss_pred CeEEEEECCCCCEEEEEcCCCE--------EEEEECCCCEEEEEc--CCCC-------CEEEEEEcCCCCEEEEEeCCC-
Confidence 7888999999999998887654 899998766555544 3333 578899999999998777654
Q ss_pred cccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeecCC
Q 039497 565 VMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRL 620 (642)
Q Consensus 565 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~ 620 (642)
.|.+|+.++..+..+..+...+..++|||||++|++....
T Consensus 490 ----------------~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d 529 (577)
T 2ymu_A 490 ----------------TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 529 (577)
T ss_dssp ----------------EEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred ----------------EEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECc
Confidence 7888898887788888887888899999999999876443
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.97 E-value=5.2e-28 Score=266.12 Aligned_cols=510 Identities=11% Similarity=0.046 Sum_probs=301.8
Q ss_pred cceEEEEeecCCceeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCc-cc
Q 039497 4 KGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSK-TE 82 (642)
Q Consensus 4 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~-~~ 82 (642)
|+.|++. .+..|.+.++.. +.....|+.|...+...+|| |||++|| ++..+|..+||.+..+... ..
T Consensus 30 g~~l~~~------~~~~v~l~~~~~----~~~~~~~~~h~~~v~~~~~s-pdg~~la-sg~~d~~v~lWd~~~~~~~~~~ 97 (611)
T 1nr0_A 30 GDKIQYC------NGTSVYTVPVGS----LTDTEIYTEHSHQTTVAKTS-PSGYYCA-SGDVHGNVRIWDTTQTTHILKT 97 (611)
T ss_dssp SSEEEEE------ETTEEEEEETTC----SSCCEEECCCSSCEEEEEEC-TTSSEEE-EEETTSEEEEEESSSTTCCEEE
T ss_pred CCEEEeC------CCCEEEEecCCC----cccCeEecCCCCceEEEEEC-CCCcEEE-EEeCCCCEEEeECCCCcceeeE
Confidence 5577776 334666666643 15677889999999999999 9999999 5556899999987322211 11
Q ss_pred ccCCCCCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcE-EEEEecCC
Q 039497 83 LLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKF-IAVASYES 161 (642)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~-la~~~~~~ 161 (642)
.+.........-..+.+++.|+........ .+.++..+. +.....+..+.......+|+|||++ ||..+.+.
T Consensus 98 ~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~------~~~v~~wd~-~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~ 170 (611)
T 1nr0_A 98 TIPVFSGPVKDISWDSESKRIAAVGEGRER------FGHVFLFDT-GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN 170 (611)
T ss_dssp EEECSSSCEEEEEECTTSCEEEEEECCSSC------SEEEEETTT-CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTS
T ss_pred eecccCCceEEEEECCCCCEEEEEECCCCc------eeEEEEeeC-CCCcceecCCCCCceEEEECCCCCeEEEEEeCCC
Confidence 111111111101122356666655543211 124665553 2334455556656677899999984 78777666
Q ss_pred CCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceee
Q 039497 162 RPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRV 238 (642)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l 238 (642)
.|.+|+...++.......+.. .++|+|||+++++. ..++...|| +..++. ....+
T Consensus 171 ------------~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~-s~D~~i~lw--d~~~g~-------~~~~~ 228 (611)
T 1nr0_A 171 ------------TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST-GGDGTIVLY--NGVDGT-------KTGVF 228 (611)
T ss_dssp ------------CEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEE--ETTTCC-------EEEEC
T ss_pred ------------eEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEE-ECCCcEEEE--ECCCCc-------Eeeee
Confidence 688899777654444333332 45999999988887 567855555 555542 22233
Q ss_pred C-------CCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCC---------CcccCCeecCCCCEEEEEEee
Q 039497 239 T-------PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPN---------FHHYNPFVSANSEFIGYHRFR 302 (642)
Q Consensus 239 ~-------~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~---------~~~~~~~~spDg~~l~~~~~~ 302 (642)
. .+...+..++|+|||++|+....++ .+++||+..... ..........+++.++....+
T Consensus 229 ~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~-----~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d 303 (611)
T 1nr0_A 229 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADK-----TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 303 (611)
T ss_dssp BCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETT
T ss_pred ccccccccccCCCEEEEEECCCCCEEEEEeCCC-----eEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCC
Confidence 1 4555678899999999999866554 899999832210 000011112255555555433
Q ss_pred cCCCCCCcccceEeeccCCCceeEEeee---CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCce
Q 039497 303 GESTEGQSTIPHLEPVASPVKELRMLRL---NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAF 376 (642)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~ 376 (642)
+. ..+| ...... ....... .....+|+|||++|+..+. ...|.++|+.+++...... ...+.
T Consensus 304 ~~------i~~~--~~~~~~-~~~~~~gh~~~v~~l~~spdg~~l~s~s~---D~~v~~Wd~~~~~~~~~~~~~h~~~v~ 371 (611)
T 1nr0_A 304 GF------INFV--NPELGS-IDQVRYGHNKAITALSSSADGKTLFSADA---EGHINSWDISTGISNRVFPDVHATMIT 371 (611)
T ss_dssp CC------EEEE--ETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTCCEEECSSCSCSSCEE
T ss_pred Cc------EEEE--eCCCCC-cceEEcCCCCCEEEEEEeCCCCEEEEEeC---CCcEEEEECCCCceeeecccCCcceEE
Confidence 32 2222 221111 1111111 1135689999999887664 3578888988876544431 34566
Q ss_pred eeeeecCCCEEEEEEcCCCcccCCCeEEEEEE-------------EeecCCC-----CCCCCCcc------------ccc
Q 039497 377 YNSWSPTEKHVIYTSTGPIFQSERATVQIARV-------------SFQLDPS-----DDNNREEI------------PCD 426 (642)
Q Consensus 377 ~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~-------------~~~~~~~-----~~~~~~~~------------~~~ 426 (642)
.+.|++++. |+..+. +..+++|++ .. ... ..+++..+ ...
T Consensus 372 ~~~~s~~~~-l~s~s~-------d~~v~~w~~~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~ 441 (611)
T 1nr0_A 372 GIKTTSKGD-LFTVSW-------DDHLKVVPAGGSGVDSSKAVANKL--SSQPLGLAVSADGDIAVAACYKHIAIYSHGK 441 (611)
T ss_dssp EEEECTTSC-EEEEET-------TTEEEEECSSSSSSCTTSCCEEEC--SSCEEEEEECTTSSCEEEEESSEEEEEETTE
T ss_pred EEEECCCCc-EEEEEc-------CCceEEeecCCccccccceeeeec--CCCCcEEEEeCCCcEEEEEeCceEEEEeCCc
Confidence 777777664 444432 333444431 00 000 00000000 001
Q ss_pred eEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCC
Q 039497 427 VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHN 506 (642)
Q Consensus 427 ~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~ 506 (642)
...+. .. ..+..++|||||++|+..+.+ ..|.+|++.+++. ..... ..+...+..++|||||++|+..+.+..
T Consensus 442 ~~~~~-~~-~~v~~va~spdg~~lasgs~D---~~v~lwd~~~~~~-~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~ 514 (611)
T 1nr0_A 442 LTEVP-IS-YNSSCVALSNDKQFVAVGGQD---SKVHVYKLSGASV-SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRK 514 (611)
T ss_dssp EEEEE-CS-SCEEEEEECTTSCEEEEEETT---SEEEEEEEETTEE-EEEEE-EECSSCEEEEEECTTSSEEEEEETTSC
T ss_pred eeeee-cC-CCceEEEEeCCCCEEEEeCCC---CeEEEEEccCCce-eeeec-cCCCCceEEEEECCCCCEEEEEcCCCC
Confidence 11111 12 345678999999999888743 3788888876652 00122 335566788999999999998887765
Q ss_pred CCCCCceeEEEEeCCC-CceEEe-eecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEE
Q 039497 507 PDNVEAFSLYVIKPDG-SGLRRI-HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYV 584 (642)
Q Consensus 507 ~~~~~~~~l~~~d~~~-~~~~~l-~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 584 (642)
|.+|++.+ ++.... ....+.. .+..++|||||++|+..+.++ .|.+
T Consensus 515 --------v~~w~~~~~~~~~~~~~~~~H~~-------~V~~v~fspdg~~lasgs~D~-----------------~v~l 562 (611)
T 1nr0_A 515 --------VIPYSVANNFELAHTNSWTFHTA-------KVACVSWSPDNVRLATGSLDN-----------------SVIV 562 (611)
T ss_dssp --------EEEEEGGGTTEESCCCCCCCCSS-------CEEEEEECTTSSEEEEEETTS-----------------CEEE
T ss_pred --------EEEEEcCCCCceeeeeeeeeccc-------ceeEEEECCCCCEEEEEECCC-----------------cEEE
Confidence 99999976 333221 1111333 678999999999999887665 6778
Q ss_pred EEcCCCc--e-eeccCC-CCCCCCcEEecCCceEEeecCCC
Q 039497 585 VKLDGSG--L-RRLTWN-GYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 585 ~~~~~~~--~-~~lt~~-~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
|+++.+. + ..+..+ ...+..++|+||++ +++....+
T Consensus 563 W~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~ 602 (611)
T 1nr0_A 563 WNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDS 602 (611)
T ss_dssp EETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTS
T ss_pred EECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCC
Confidence 8887654 3 445555 56678999999999 76655443
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.96 E-value=5.3e-27 Score=280.00 Aligned_cols=500 Identities=13% Similarity=0.060 Sum_probs=317.8
Q ss_pred eeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCccccccc
Q 039497 18 GFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPV 97 (642)
Q Consensus 18 ~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~ 97 (642)
.+.|.+.+... +.....+..|...+...+|| |||++||.. ..+|...||.+..+. ....+.........-...
T Consensus 636 d~~i~vw~~~~----~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~-~~d~~v~vwd~~~~~-~~~~~~~~~~~v~~~~~~ 708 (1249)
T 3sfz_A 636 DKTLQVFKAET----GEKLLDIKAHEDEVLCCAFS-SDDSYIATC-SADKKVKIWDSATGK-LVHTYDEHSEQVNCCHFT 708 (1249)
T ss_dssp TSCEEEEETTT----CCEEEEECCCSSCEEEEEEC-TTSSEEEEE-ETTSEEEEEETTTCC-EEEEEECCSSCEEEEEEC
T ss_pred CCeEEEEECCC----CCEEEEeccCCCCEEEEEEe-cCCCEEEEE-eCCCeEEEEECCCCc-eEEEEcCCCCcEEEEEEe
Confidence 45677766654 14467888999999999999 999999854 457888888873322 111111111100000111
Q ss_pred cC-CCEEEEEEeccCCCcccccccceEEEEccCCceE-ecccCCCccCCceeCCCCcEEEEEecCCC--CCCCCCC----
Q 039497 98 AR-NNKLFFISAHEQPDQIFKSWSALYSTDLKASKFT-RLTPYGVVDYSPSVSYSGKFIAVASYESR--PWPGEFH---- 169 (642)
Q Consensus 98 ~~-~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~--~~~~~~~---- 169 (642)
.+ +..++++...+ +.|..+++.+++.. .+..+.......+|||||++|+....++. +|.....
T Consensus 709 ~~~~~~~l~sg~~d---------~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~ 779 (1249)
T 3sfz_A 709 NKSNHLLLATGSND---------FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERK 779 (1249)
T ss_dssp SSSSCCEEEEEETT---------SCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEE
T ss_pred cCCCceEEEEEeCC---------CeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccc
Confidence 12 33344444433 14666688877644 45555555677899999999998876651 1110000
Q ss_pred ------------------------------------CCeeeEEEEEecCCCceeEee-cCC---CcceEeeCCeEEEEEe
Q 039497 170 ------------------------------------ELNTDIVVFQESDPNKRVIVC-ERG---GWPTWSGDSTIYFHRQ 209 (642)
Q Consensus 170 ------------------------------------~~~~~l~~~~~~~g~~~~l~~-~~~---~~~~wspdg~~~~~~~ 209 (642)
.....+++|++.++....... .+. ..++|+|++.++++.
T Consensus 780 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~- 858 (1249)
T 3sfz_A 780 SINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIA- 858 (1249)
T ss_dssp EEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEE-
T ss_pred eecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEE-
Confidence 001123333333333222221 111 134677777766666
Q ss_pred cCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeec-----------
Q 039497 210 ADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL----------- 278 (642)
Q Consensus 210 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~----------- 278 (642)
..+|. |..++..++. ....+..+...+..++|+|||++|+....++ .+.+|++..
T Consensus 859 ~~dg~--v~vwd~~~~~-------~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg-----~v~vw~~~~~~~~~~~~~~~ 924 (1249)
T 3sfz_A 859 LSQYC--VELWNIDSRL-------KVADCRGHLSWVHGVMFSPDGSSFLTASDDQ-----TIRVWETKKVCKNSAIVLKQ 924 (1249)
T ss_dssp CSSSC--EEEEETTTTE-------EEEEECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEHHHHHSCCSSSEEE
T ss_pred eCCCe--EEEEEcCCCc-------eeeecCCCccceEEEEECCCCCEEEEEeCCC-----eEEEEEccccceeeeecccc
Confidence 44554 4444555553 4455666666788899999999998866544 788888521
Q ss_pred ----------------------------------CCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCce
Q 039497 279 ----------------------------------NPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKE 324 (642)
Q Consensus 279 ----------------------------------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (642)
.....+....++|+|+.+++...++. . .+..+......
T Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~------i--~i~d~~~~~~~ 996 (1249)
T 3sfz_A 925 EIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGA------I--KIIELPNNRVF 996 (1249)
T ss_dssp EEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSC------C--EEEETTTTSCE
T ss_pred eeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCC------E--EEEEcCCCcee
Confidence 01223455689999999888765443 2 22232222111
Q ss_pred eEE--eeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCC
Q 039497 325 LRM--LRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERA 401 (642)
Q Consensus 325 ~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 401 (642)
... .......+.|+|||++|+..+. ...|.++++.+++...+.. ...+..+.|+|+++ ++..+. ++
T Consensus 997 ~~~~~h~~~v~~l~~s~dg~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~-------dg 1065 (1249)
T 3sfz_A 997 SSGVGHKKAVRHIQFTADGKTLISSSE---DSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR-LLSWSF-------DG 1065 (1249)
T ss_dssp EECCCCSSCCCCEEECSSSSCEEEECS---SSBEEEEETTTTEEECCBCCSSCEEEEEECSSSE-EEEEES-------SS
T ss_pred eecccCCCceEEEEECCCCCEEEEEcC---CCEEEEEECCCCceEEEecCCCcEEEEEEcCCCc-EEEEEC-------CC
Confidence 111 1122356789999998887654 4678889998887554433 56788899999876 444442 67
Q ss_pred eEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC
Q 039497 402 TVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD 481 (642)
Q Consensus 402 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~ 481 (642)
.+++|++.. +. ....+..+. ..+..++|||||++|+..+. +..|.+|++.+++. +..+..
T Consensus 1066 ~v~vwd~~~--------~~-----~~~~~~~~~-~~v~~~~~s~d~~~l~s~s~---d~~v~iwd~~~~~~---~~~l~~ 1125 (1249)
T 3sfz_A 1066 TVKVWNVIT--------GR-----IERDFTCHQ-GTVLSCAISSDATKFSSTSA---DKTAKIWSFDLLSP---LHELKG 1125 (1249)
T ss_dssp EEEEEETTT--------TC-----CCEEEECCS-SCCCCEEECSSSSSCEEECC---SSCCCEECSSSSSC---SBCCCC
T ss_pred cEEEEECCC--------Cc-----eeEEEcccC-CcEEEEEECCCCCEEEEEcC---CCcEEEEECCCcce---eeeecc
Confidence 899998855 22 455565555 67888999999999987764 33788899988876 566777
Q ss_pred CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee--------cCCCCCCCcccccccceEEcCCC
Q 039497 482 GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV--------AGPEGSGDVDRERINHVCFSADG 553 (642)
Q Consensus 482 ~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~~S~Dg 553 (642)
+...+..++|||||++|+..+.++. |++||+.+++...... ..+.+ .+..+.|||||
T Consensus 1126 h~~~v~~~~~s~dg~~lat~~~dg~--------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-------~v~~l~fs~dg 1190 (1249)
T 3sfz_A 1126 HNGCVRCSAFSLDGILLATGDDNGE--------IRIWNVSDGQLLHSCAPISVEEGTATHGG-------WVTDVCFSPDS 1190 (1249)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSC--------CCEEESSSSCCCCCCCCCC-------CCS-------CCCEEEECTTS
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCE--------EEEEECCCCceEEEeccccccccccccCc-------eEEEEEECCCC
Confidence 7777888999999999999887765 8999998776533210 11222 57889999999
Q ss_pred CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce-eeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497 554 EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL-RRLTWNGYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 554 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~lt~~~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
++|+..+ + .|.+|++.+++. ..+..+...+..++|||||+++++....|
T Consensus 1191 ~~l~s~~--g-----------------~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg 1240 (1249)
T 3sfz_A 1191 KTLVSAG--G-----------------YLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLG 1240 (1249)
T ss_dssp SCEEEES--S-----------------SEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTC
T ss_pred CEEEECC--C-----------------eEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCc
Confidence 9987654 2 688889887663 44444566678999999999998865554
No 7
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.96 E-value=1.1e-26 Score=240.72 Aligned_cols=326 Identities=14% Similarity=0.115 Sum_probs=218.4
Q ss_pred eeeeEEEecCCCCCCCCCceeeecCCceeeee-----ceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCc
Q 039497 17 YGFDVFSIKSPFVNAPKFHEHRLTDGTSINFN-----AQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSL 91 (642)
Q Consensus 17 ~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~-----~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~ 91 (642)
.+..+|+.+..| +..++||.+...... |+|| |||++|||.+.++|..
T Consensus 9 ~~~~~~~~~~~g-----~~~~~lt~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~g~~---------------------- 60 (388)
T 3pe7_A 9 LTFDTYQDASTG-----AQVTRLTPPDVTCHRNYFYQKCFT-RDGSKLLFGGAFDGPW---------------------- 60 (388)
T ss_dssp CCCEEEECTTTC-----CEEEECSCTTSCEECCCTTSCCBC-TTSCEEEEEECTTSSC----------------------
T ss_pred ccceEEecCCCC-----cceEEecCCcccccchhhcCccCC-CCCCEEEEEEcCCCCc----------------------
Confidence 467999999998 999999998877666 9999 9999999988655543
Q ss_pred cccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCcc-CCceeCCCCcEEEEEecCCCCCCCCCCC
Q 039497 92 FHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVD-YSPSVSYSGKFIAVASYESRPWPGEFHE 170 (642)
Q Consensus 92 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~-~~~~~SPDG~~la~~~~~~~~~~~~~~~ 170 (642)
+||.+++.+++.++++...... ..+.|||||++|||...+.
T Consensus 61 -----------------------------~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~--------- 102 (388)
T 3pe7_A 61 -----------------------------NYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR--------- 102 (388)
T ss_dssp -----------------------------EEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTT---------
T ss_pred -----------------------------eEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCC---------
Confidence 3555677777788887665544 3689999999999998554
Q ss_pred CeeeEEEEEecCCCceeEeecCCCc---ceE--eeCCeEEEEEe--c-----------------CCCceEEEEEecCCCc
Q 039497 171 LNTDIVVFQESDPNKRVIVCERGGW---PTW--SGDSTIYFHRQ--A-----------------DDGWWSIFRVSFPENL 226 (642)
Q Consensus 171 ~~~~l~~~~~~~g~~~~l~~~~~~~---~~w--spdg~~~~~~~--~-----------------~~g~~~l~~~~~~~~~ 226 (642)
.|+++++.+++.+.+....... ..| +||+++++... . ......|+.+++.++
T Consensus 103 ---~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g- 178 (388)
T 3pe7_A 103 ---NLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG- 178 (388)
T ss_dssp ---EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC-
T ss_pred ---eEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC-
Confidence 7999999999988887654432 234 79997665321 0 122358999999988
Q ss_pred ccccCCccceeeCCCCCccccceeec-CCcEEEEEEeccC-CceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecC
Q 039497 227 EFLGFPIAPTRVTPPGVHCFTPAAFH-DGKRLAVATRRKN-RNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGE 304 (642)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~~~~~~~Sp-dG~~l~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~ 304 (642)
+.+.++.....+..++||| ||++|+|+..... .....|+++|+....
T Consensus 179 -------~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~------------------------ 227 (388)
T 3pe7_A 179 -------ESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN------------------------ 227 (388)
T ss_dssp -------CEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC------------------------
T ss_pred -------ceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc------------------------
Confidence 6677766555567788999 9999998765321 112355555441100
Q ss_pred CCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCce--eEEEEECCCCCeeEEeecCC-------c
Q 039497 305 STEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA--GIKIAKSDGSKRWTLIKDRT-------A 375 (642)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~--~l~~~d~~~~~~~~l~~~~~-------~ 375 (642)
. ..+...... .....+.|||||++|+|.....+.. .|+++|+++++.+.+..... .
T Consensus 228 -------~---~~l~~~~~~-----~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~ 292 (388)
T 3pe7_A 228 -------M---RKVKTHAEG-----ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNY 292 (388)
T ss_dssp -------C---EESCCCCTT-----EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECT
T ss_pred -------e---EEeeeCCCC-----cccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecC
Confidence 0 000000000 0012468999999999977644444 49999999998777755222 3
Q ss_pred eeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCC-----------CccCcEEC
Q 039497 376 FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETG-----------NNAFPSCS 444 (642)
Q Consensus 376 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~S 444 (642)
....|||||+.|++...............|+.++. + ++ ..+.++... . ....++||
T Consensus 293 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~--~-----~~-----~~~~l~~~~-~~~~~~~~~~~~~~~~~~~s 359 (388)
T 3pe7_A 293 DGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNM--K-----NG-----TQHRVARHD-TSWKVFEGDRQVTHPHPSFT 359 (388)
T ss_dssp TSSEEEEEECCC------------CCCCEEEEEET--T-----TT-----EEEEEEECC-CCCCCBTTBSSTTCCCCEEC
T ss_pred CCCeEccCCCcceeEeeeccccccCCCCEEEEEec--c-----CC-----ceEEecccc-CcccccccccccCCCCccCC
Confidence 34579999999998652100000023334555554 2 33 566676654 3 46778999
Q ss_pred CCCCeEEEEeCCCCceeEEEEECCCCc
Q 039497 445 PDGKFLVFRSGRSGHKNLFVLDAVNGE 471 (642)
Q Consensus 445 pDg~~l~~~~~~~g~~~l~~~d~~~g~ 471 (642)
|||++|+|.+.+.+..+||++++..+.
T Consensus 360 pDg~~l~~~s~~~g~~~l~~~~l~~~~ 386 (388)
T 3pe7_A 360 PDDKQILFTSDVHGKPALYLATLPESV 386 (388)
T ss_dssp TTSSEEEEEECTTSSCEEEEEECCGGG
T ss_pred CCCCEEEEEecCCCceeEEEEECChhc
Confidence 999999999999899999999987543
No 8
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.95 E-value=3.9e-25 Score=243.23 Aligned_cols=469 Identities=12% Similarity=0.042 Sum_probs=275.6
Q ss_pred ceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCccccccccCCCEEEEEEeccCCCcccccccce
Q 039497 43 TSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSAL 122 (642)
Q Consensus 43 ~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 122 (642)
.+......|| |||++||+.+ ++...||.+. .+.....+.........-..+.+|+.|+- ...+. .|
T Consensus 18 ~g~~~~~~~s-pdg~~l~~~~--~~~v~l~~~~-~~~~~~~~~~h~~~v~~~~~spdg~~las-g~~d~---------~v 83 (611)
T 1nr0_A 18 RGTAVVLGNT-PAGDKIQYCN--GTSVYTVPVG-SLTDTEIYTEHSHQTTVAKTSPSGYYCAS-GDVHG---------NV 83 (611)
T ss_dssp TTCCCCCEEC-TTSSEEEEEE--TTEEEEEETT-CSSCCEEECCCSSCEEEEEECTTSSEEEE-EETTS---------EE
T ss_pred cCceeEEeeC-CCCCEEEeCC--CCEEEEecCC-CcccCeEecCCCCceEEEEECCCCcEEEE-EeCCC---------CE
Confidence 4445567799 9999999876 3456677652 22222222211111111112224554544 43321 34
Q ss_pred EEEEccCCce---EecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC---Ccc
Q 039497 123 YSTDLKASKF---TRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG---GWP 196 (642)
Q Consensus 123 ~~~~~~~~~~---~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~ 196 (642)
.+.++.+++. ..+..+.......+|||||++||....+. .....|++|+. ++.......+. ..+
T Consensus 84 ~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~--------~~~~~v~~wd~--~~~~~~l~gh~~~v~~v 153 (611)
T 1nr0_A 84 RIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR--------ERFGHVFLFDT--GTSNGNLTGQARAMNSV 153 (611)
T ss_dssp EEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCS--------SCSEEEEETTT--CCBCBCCCCCSSCEEEE
T ss_pred EEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCC--------CceeEEEEeeC--CCCcceecCCCCCceEE
Confidence 4447654332 23444555567789999999999876543 01246777763 33222222222 246
Q ss_pred eEeeCCe-EEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEE
Q 039497 197 TWSGDST-IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD 275 (642)
Q Consensus 197 ~wspdg~-~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d 275 (642)
+|+|++. ++++. ..++...||. ..++. ....+..+...+..++|+|||++|+....++ .+++||
T Consensus 154 ~f~p~~~~~l~s~-s~D~~v~lwd--~~~~~-------~~~~l~~H~~~V~~v~fspdg~~las~s~D~-----~i~lwd 218 (611)
T 1nr0_A 154 DFKPSRPFRIISG-SDDNTVAIFE--GPPFK-------FKSTFGEHTKFVHSVRYNPDGSLFASTGGDG-----TIVLYN 218 (611)
T ss_dssp EECSSSSCEEEEE-ETTSCEEEEE--TTTBE-------EEEEECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEE
T ss_pred EECCCCCeEEEEE-eCCCeEEEEE--CCCCe-------EeeeeccccCceEEEEECCCCCEEEEEECCC-----cEEEEE
Confidence 9999996 45555 5678666664 44442 3445666766788899999999999866554 899999
Q ss_pred eec---------------CCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeC----CCccE
Q 039497 276 LTL---------------NPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLN----GSFPS 336 (642)
Q Consensus 276 ~~~---------------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 336 (642)
+.. .+...+...+|+|||+.|+....++. ..+|- +... ..+...... .....
T Consensus 219 ~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~------v~lWd--~~~~-~~~~~~~~~~~~~~~~~~ 289 (611)
T 1nr0_A 219 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT------IKIWN--VATL-KVEKTIPVGTRIEDQQLG 289 (611)
T ss_dssp TTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE------EEEEE--TTTT-EEEEEEECCSSGGGCEEE
T ss_pred CCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCe------EEEEe--CCCC-ceeeeecCCCCccceeEE
Confidence 621 34555677899999999988765443 33332 2211 111111111 01112
Q ss_pred EcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCC
Q 039497 337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414 (642)
Q Consensus 337 ~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 414 (642)
...+++.++.... ...+.+++...++...... ...+..++|+|||+.|+..+. ++.+++|++..
T Consensus 290 ~~~~~~~l~s~s~---d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~-------D~~v~~Wd~~~---- 355 (611)
T 1nr0_A 290 IIWTKQALVSISA---NGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADA-------EGHINSWDIST---- 355 (611)
T ss_dssp EEECSSCEEEEET---TCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-------TSCEEEEETTT----
T ss_pred EEEcCCEEEEEeC---CCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeC-------CCcEEEEECCC----
Confidence 2236676766554 3567778887776444333 556889999999999988874 68899998754
Q ss_pred CCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcccc--------------------
Q 039497 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG-------------------- 474 (642)
Q Consensus 415 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-------------------- 474 (642)
+. ....+.......+..+.|+++++ |+..+.+ ..+.+|+..++....
T Consensus 356 ----~~-----~~~~~~~~h~~~v~~~~~s~~~~-l~s~s~d---~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 422 (611)
T 1nr0_A 356 ----GI-----SNRVFPDVHATMITGIKTTSKGD-LFTVSWD---DHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSAD 422 (611)
T ss_dssp ----CC-----EEECSSCSCSSCEEEEEECTTSC-EEEEETT---TEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTT
T ss_pred ----Cc-----eeeecccCCcceEEEEEECCCCc-EEEEEcC---CceEEeecCCccccccceeeeecCCCCcEEEEeCC
Confidence 11 11211111113444556665543 3333321 134444433221100
Q ss_pred ------------------ceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCC
Q 039497 475 ------------------DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS 536 (642)
Q Consensus 475 ------------------~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 536 (642)
.+..+. ....+..++|||||++|+..+.++. |++||+.++....+....+..
T Consensus 423 g~~~~~~~~~~v~~~~~~~~~~~~-~~~~v~~va~spdg~~lasgs~D~~--------v~lwd~~~~~~~~~~~~~h~~- 492 (611)
T 1nr0_A 423 GDIAVAACYKHIAIYSHGKLTEVP-ISYNSSCVALSNDKQFVAVGGQDSK--------VHVYKLSGASVSEVKTIVHPA- 492 (611)
T ss_dssp SSCEEEEESSEEEEEETTEEEEEE-CSSCEEEEEECTTSCEEEEEETTSE--------EEEEEEETTEEEEEEEEECSS-
T ss_pred CcEEEEEeCceEEEEeCCceeeee-cCCCceEEEEeCCCCEEEEeCCCCe--------EEEEEccCCceeeeeccCCCC-
Confidence 012221 2234567899999999998887764 899999877654333333444
Q ss_pred CCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC-Cceee---ccCCCCCCCCcEEecCCc
Q 039497 537 GDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG-SGLRR---LTWNGYENGTPAWHPGNQ 612 (642)
Q Consensus 537 ~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~---lt~~~~~~~~~~~s~dg~ 612 (642)
.+..++|||||++|+..+.++ .|.+|++.. +++.. +..+...+..++|||||+
T Consensus 493 ------~v~~v~fspdg~~las~s~d~-----------------~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~ 549 (611)
T 1nr0_A 493 ------EITSVAFSNNGAFLVATDQSR-----------------KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 549 (611)
T ss_dssp ------CEEEEEECTTSSEEEEEETTS-----------------CEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS
T ss_pred ------ceEEEEECCCCCEEEEEcCCC-----------------CEEEEEcCCCCceeeeeeeeecccceeEEEECCCCC
Confidence 678999999999998877654 678888875 44332 222556678999999999
Q ss_pred eEEeecC
Q 039497 613 LDLGKLR 619 (642)
Q Consensus 613 ~~~~~~~ 619 (642)
+|++...
T Consensus 550 ~lasgs~ 556 (611)
T 1nr0_A 550 RLATGSL 556 (611)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9987543
No 9
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.95 E-value=4e-26 Score=237.04 Aligned_cols=367 Identities=15% Similarity=0.156 Sum_probs=232.1
Q ss_pred CCCcceEEEEeecCCceeeeEEEecCCCCCCCCCceeeecCCcee-----eeeceecCCCCCeEEEEEccCCCcceEEEc
Q 039497 1 MEPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSI-----NFNAQFVDGQDQTIAFISERSGSPRIYQTR 75 (642)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~-----~~~~~~S~pDG~~laf~~~~~g~~~l~~~~ 75 (642)
|+.|...... + ..|+.+..| ...++||.+... ...|+|| |||++|||....+|..+
T Consensus 1 ~~~~~~~~~~------~--~~~~d~~~g-----~~~~~l~~~~~~~~~~~~~~~~~S-pdG~~l~~~~~~~g~~~----- 61 (396)
T 3c5m_A 1 MAKGDVITLN------F--ETFVDSDTQ-----VKVTRLTPTDIICHRNYFYQKCFT-QDGKKLLFAGDFDGNRN----- 61 (396)
T ss_dssp -CTTCEEECC------E--EEEECTTTC-----CEEEECSCTTSCEECCCTTSCCBC-TTSCEEEEEECTTSSCE-----
T ss_pred CCcccccchh------h--heeecCCCC-----cceEEEecCCCCccceeeecCcCC-CCCCEEEEEEecCCCce-----
Confidence 6667766655 4 789988887 788999977554 6789999 99999999876544433
Q ss_pred CCCCcccccCCCCCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccC-CceeCCCCcEE
Q 039497 76 PGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDY-SPSVSYSGKFI 154 (642)
Q Consensus 76 ~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~-~~~~SPDG~~l 154 (642)
||++++.+++.++++....... .+.|||||++|
T Consensus 62 ----------------------------------------------l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l 95 (396)
T 3c5m_A 62 ----------------------------------------------YYLLNLETQQAVQLTEGKGDNTFGGFISTDERAF 95 (396)
T ss_dssp ----------------------------------------------EEEEETTTTEEEECCCSSCBCTTTCEECTTSSEE
T ss_pred ----------------------------------------------EEEEECCCCcEEEeecCCCCccccceECCCCCEE
Confidence 5555666667777766554433 38899999999
Q ss_pred EEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCCcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCcc
Q 039497 155 AVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIA 234 (642)
Q Consensus 155 a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~ 234 (642)
||..... .||++++.+++.++++.... .
T Consensus 96 ~~~~~~~------------~l~~~d~~~~~~~~~~~~~~---~------------------------------------- 123 (396)
T 3c5m_A 96 FYVKNEL------------NLMKVDLETLEEQVIYTVDE---E------------------------------------- 123 (396)
T ss_dssp EEEETTT------------EEEEEETTTCCEEEEEECCT---T-------------------------------------
T ss_pred EEEEcCC------------cEEEEECCCCCcEEEEeccc---c-------------------------------------
Confidence 9987544 57777777766555543111 1
Q ss_pred ceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccce
Q 039497 235 PTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPH 314 (642)
Q Consensus 235 ~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~ 314 (642)
|+|+|++|++..... ...+
T Consensus 124 ---------------~~~~g~~l~~~~~~~-----~~~~----------------------------------------- 142 (396)
T 3c5m_A 124 ---------------WKGYGTWVANSDCTK-----LVGI----------------------------------------- 142 (396)
T ss_dssp ---------------EEEEEEEEECTTSSE-----EEEE-----------------------------------------
T ss_pred ---------------cCCCCCEEEeccCCc-----cccc-----------------------------------------
Confidence 344444444411000 0000
Q ss_pred EeeccCCCceeEEeeeCCCccEEcCCCCEEEEEe--cCCCceeEEEEECCCCCeeEEee-cCCceeeeeec-CCCEEEEE
Q 039497 315 LEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNH--DFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSP-TEKHVIYT 390 (642)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~--~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~sp-dg~~l~~~ 390 (642)
.. ..+.|+|||+.+++.. .......|+++++++++.+.+.. ...+..+.|+| ||++|+|+
T Consensus 143 -----------~~-----~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~ 206 (396)
T 3c5m_A 143 -----------EI-----LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFC 206 (396)
T ss_dssp -----------EE-----EGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEE
T ss_pred -----------cc-----cccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEE
Confidence 00 0234566666665532 11345688999998888777665 45577899999 89999998
Q ss_pred EcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC-CCCccCcEECCCCCeEEEEeCCCCcee--EEEEEC
Q 039497 391 STGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE-TGNNAFPSCSPDGKFLVFRSGRSGHKN--LFVLDA 467 (642)
Q Consensus 391 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~SpDg~~l~~~~~~~g~~~--l~~~d~ 467 (642)
.... .......||.++. + ++ ..+.+.... ...+..+.|||||++|+|.+...+... |+++|+
T Consensus 207 ~~~~---~~~~~~~l~~~d~--~-----~~-----~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 271 (396)
T 3c5m_A 207 HEGP---HDLVDARMWLVNE--D-----GS-----NVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANP 271 (396)
T ss_dssp ECSC---SSSCSCCCEEEET--T-----SC-----CCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECT
T ss_pred ecCC---CCCCCceEEEEEC--C-----CC-----ceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEEC
Confidence 7421 0011145666655 3 23 445555432 124566899999999999987655555 999999
Q ss_pred CCCccccceeeCCCCCCcccceeEec-CCCEEEEEecCCC--------CCCCCceeEEEEeCCCCceEEeeecCCCC-CC
Q 039497 468 VNGEFNGDIRQLTDGPWIDTMPSWSP-KGDLIAFSSNRHN--------PDNVEAFSLYVIKPDGSGLRRIHVAGPEG-SG 537 (642)
Q Consensus 468 ~~g~~~~~~~~l~~~~~~~~~~~~sp-dG~~l~~~~~~~~--------~~~~~~~~l~~~d~~~~~~~~l~~~~~~~-~~ 537 (642)
.+|+. +.+...... . +.|+| ||++|++...... ....+...||++|+++++.+.++...... ..
T Consensus 272 ~~g~~----~~l~~~~~~-~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~ 345 (396)
T 3c5m_A 272 ETLEN----EEVMVMPPC-S-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVL 345 (396)
T ss_dssp TTCCE----EEEEECCSE-E-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCB
T ss_pred CCCCe----EEeeeCCCC-C-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccc
Confidence 98874 555543332 2 89999 9998887653200 00113467999999998887776532200 00
Q ss_pred Cccc-ccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc
Q 039497 538 DVDR-ERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596 (642)
Q Consensus 538 ~~~~-~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt 596 (642)
..++ .....+.|||||++|+|.+...+. ..||.++++++..+.+.
T Consensus 346 ~~~~~~~~~~~~~s~dg~~l~~~s~~~~~--------------~~l~~~~~~~~~~~~~~ 391 (396)
T 3c5m_A 346 DGDRQITHPHPSFTPNDDGVLFTSDFEGV--------------PAIYIADVPESYKHLEH 391 (396)
T ss_dssp TTBSSTTCCCCEECTTSSEEEEEECTTSS--------------CEEEEEECCTTCC----
T ss_pred cccccCCCCCceEccCCCeEEEEecCCCC--------------ceEEEEEEccccccccc
Confidence 0000 013568999999999999876543 38999999988766554
No 10
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.95 E-value=3.3e-25 Score=249.30 Aligned_cols=370 Identities=14% Similarity=0.058 Sum_probs=240.0
Q ss_pred cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC------Cc--ceEeeCCe-EEEEEecC-
Q 039497 142 DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG------GW--PTWSGDST-IYFHRQAD- 211 (642)
Q Consensus 142 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~------~~--~~wspdg~-~~~~~~~~- 211 (642)
...++|||||++|+.. +. .|++|++.+++.+++..... .. ++|||||+ +++.....
T Consensus 19 ~~~~~w~~dg~~~~~~--~~------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~ 84 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--EN------------NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVK 84 (740)
T ss_dssp CCCEEECSSSEEEEEE--TT------------EEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEE
T ss_pred ccccEECCCCcEEEEc--CC------------cEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCee
Confidence 4578999999988774 33 69999999999877765332 12 68999996 55544321
Q ss_pred ----CCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCC------C
Q 039497 212 ----DGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNP------N 281 (642)
Q Consensus 212 ----~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~------~ 281 (642)
.....+|.+++.++ +..+++.....+..++|||||++|+|+.. ..|+++++..+. .
T Consensus 85 ~~r~~~~~~~~~~d~~~~--------~~~~l~~~~~~~~~~~~SPdG~~la~~~~------~~i~~~~~~~~~~~~lt~~ 150 (740)
T 4a5s_A 85 QWRHSYTASYDIYDLNKR--------QLITEERIPNNTQWVTWSPVGHKLAYVWN------NDIYVKIEPNLPSYRITWT 150 (740)
T ss_dssp CSSSCEEEEEEEEETTTT--------EECCSSCCCTTEEEEEECSSTTCEEEEET------TEEEEESSTTSCCEECCSC
T ss_pred eEEEccceEEEEEECCCC--------cEEEcccCCCcceeeEECCCCCEEEEEEC------CeEEEEECCCCceEEEcCC
Confidence 11248899999998 56677776556788999999999999743 278888873211 1
Q ss_pred --------------------CcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCc-eeEEeeeCCCccEEcCC
Q 039497 282 --------------------FHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVK-ELRMLRLNGSFPSFSPD 340 (642)
Q Consensus 282 --------------------~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spd 340 (642)
.....+.|||||++|+|.+.+... ...+......... .. .......+.++
T Consensus 151 g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~-----v~~~~~~~~~~~~~~~----~~~~~~~yp~~ 221 (740)
T 4a5s_A 151 GKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTE-----VPLIEYSFYSDESLQY----PKTVRVPYPKA 221 (740)
T ss_dssp CBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTT-----CCEEEEEECCSTTCSS----CEEEEEECCBT
T ss_pred CCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccC-----CceEEEEeecCCCCCC----CcceeecCCCC
Confidence 111347899999999999876552 1122111111100 00 00001233334
Q ss_pred CCEEEEEecCCCceeEEEEECCC---C---CeeEEee-------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497 341 GGLIVFNHDFELNAGIKIAKSDG---S---KRWTLIK-------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR 407 (642)
Q Consensus 341 g~~l~~~~~~~~~~~l~~~d~~~---~---~~~~l~~-------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~ 407 (642)
|.. .....|+++|+++ + +..++.. ...+..+.|||||+.+++..... .....+.+|+
T Consensus 222 G~~-------~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~---~~~~~i~~~d 291 (740)
T 4a5s_A 222 GAV-------NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRI---QNYSVMDICD 291 (740)
T ss_dssp TSC-------CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESS---TTEEEEEEEE
T ss_pred cCc-------CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCC---CCEEEEEEEE
Confidence 421 3345899999998 7 5555542 23466889999999887766531 1123455666
Q ss_pred EEeecCCCCCCCC----CccccceEEc-cccCCCC-----ccCcEECCCCCeEE-EEeCCCCceeEEEEECCCCccccce
Q 039497 408 VSFQLDPSDDNNR----EEIPCDVKIL-TKEETGN-----NAFPSCSPDGKFLV-FRSGRSGHKNLFVLDAVNGEFNGDI 476 (642)
Q Consensus 408 ~~~~~~~~~~~~~----~~~~~~~~~l-~~~~~~~-----~~~~~~SpDg~~l~-~~~~~~g~~~l~~~d~~~g~~~~~~ 476 (642)
+.. +. +. ....+ ....... ...+.|||||++|+ +.+.++|..+||++++++++.
T Consensus 292 ~~t--------g~~~~~~~---~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~---- 356 (740)
T 4a5s_A 292 YDE--------SSGRWNCL---VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC---- 356 (740)
T ss_dssp EET--------TTTEEEEC---GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC----
T ss_pred CCC--------Ccccccee---EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce----
Confidence 554 11 00 11222 1111122 23789999999998 888888999999999998874
Q ss_pred eeCCCCCCcccceeEecCCCEEEEEecC--CCCCCCCceeEEEEeCCCCceE-EeeecCCCCCCCcccccccceEEcCCC
Q 039497 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNR--HNPDNVEAFSLYVIKPDGSGLR-RIHVAGPEGSGDVDRERINHVCFSADG 553 (642)
Q Consensus 477 ~~l~~~~~~~~~~~~spdG~~l~~~~~~--~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~S~Dg 553 (642)
++|+.+.+.+..+ +++||+.|+|.+.. .. ....+||+++++++..+ +++...... ......+.|||||
T Consensus 357 ~~lT~g~~~v~~~-~~~d~~~i~f~~~~~~~~---~~~~~ly~v~~~g~~~~~~lt~~~~~~-----~~~~~~~~~S~dg 427 (740)
T 4a5s_A 357 TFITKGTWEVIGI-EALTSDYLYYISNEYKGM---PGGRNLYKIQLIDYTKVTCLSCELNPE-----RCQYYSVSFSKEA 427 (740)
T ss_dssp EESCCSSSCEEEE-EEECSSEEEEEESCGGGC---TTCBEEEEEETTEEEEEEESSTTTSTT-----TBCBEEEEECTTS
T ss_pred EecccCCEEEEEE-EEEeCCEEEEEEecCCCC---CceeEEEEEECCCCCcceeeccccCCC-----CCceEEEEECCCC
Confidence 8999886666554 44679999999986 32 26789999999887665 555321000 0145689999999
Q ss_pred CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc
Q 039497 554 EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596 (642)
Q Consensus 554 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt 596 (642)
+++++.....+. ..+++++..+++..+++
T Consensus 428 ~~~~~~~s~~~~--------------p~~~l~~~~~~~~~~~l 456 (740)
T 4a5s_A 428 KYYQLRCSGPGL--------------PLYTLHSSVNDKGLRVL 456 (740)
T ss_dssp SEEEEEECSBSS--------------CEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCCC--------------CEEEEEECCCCcEEEEe
Confidence 999988765432 27888888876654443
No 11
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.95 E-value=2e-26 Score=238.81 Aligned_cols=347 Identities=17% Similarity=0.145 Sum_probs=218.9
Q ss_pred ceEEEEccCCceEecccCCCccCC-----ceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC-
Q 039497 121 ALYSTDLKASKFTRLTPYGVVDYS-----PSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG- 194 (642)
Q Consensus 121 ~l~~~~~~~~~~~~lt~~~~~~~~-----~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~- 194 (642)
++|..+..++..++|+.+...... |+|||||++|||.+... +..+||++++++++.++++.....
T Consensus 12 ~~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~---------g~~~l~~~d~~~g~~~~lt~~~~~~ 82 (388)
T 3pe7_A 12 DTYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFD---------GPWNYYLLDLNTQVATQLTEGRGDN 82 (388)
T ss_dssp EEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTT---------SSCEEEEEETTTCEEEECCCSSCBC
T ss_pred eEEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCC---------CCceEEEEeCCCCceEEeeeCCCCC
Confidence 688877778889999987654433 99999999999998744 356899999999999998875542
Q ss_pred --cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCC-CCccc--cceeecCCcEEEEEEeccCCcee
Q 039497 195 --WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPP-GVHCF--TPAAFHDGKRLAVATRRKNRNFR 269 (642)
Q Consensus 195 --~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~--~~~~SpdG~~l~~~~~~~~~~~~ 269 (642)
.+.|||||+.++... .+ ..|+.+++.++ +...+... ..... ...++|||++++.
T Consensus 83 ~~~~~~spdg~~l~~~~-~~--~~l~~~d~~~g--------~~~~~~~~~~~~~~~~~~~~~~dg~~l~~---------- 141 (388)
T 3pe7_A 83 TFGGFLSPDDDALFYVK-DG--RNLMRVDLATL--------EENVVYQVPAEWVGYGTWVANSDCTKLVG---------- 141 (388)
T ss_dssp SSSCEECTTSSEEEEEE-TT--TEEEEEETTTC--------CEEEEEECCTTEEEEEEEEECTTSSEEEE----------
T ss_pred ccceEEcCCCCEEEEEe-CC--CeEEEEECCCC--------cceeeeechhhcccccceeECCCCCeecc----------
Confidence 469999996444442 22 38999999887 44433322 11111 1112445544433
Q ss_pred eEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEE--
Q 039497 270 HIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFN-- 347 (642)
Q Consensus 270 ~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~-- 347 (642)
....... +.|..++..|.
T Consensus 142 -----------------------------~~~~~~~-------------------------------~~~~~~~~~~~~~ 161 (388)
T 3pe7_A 142 -----------------------------IEIRRED-------------------------------WVPLTDWKKFHEF 161 (388)
T ss_dssp -----------------------------EEEEGGG-------------------------------CCCCCSHHHHHHH
T ss_pred -----------------------------ccccCcc-------------------------------cccccccchhhhh
Confidence 2211110 00000100000
Q ss_pred ecCCCceeEEEEECCCCCeeEEee-cCCceeeeeec-CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCcccc
Q 039497 348 HDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSP-TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPC 425 (642)
Q Consensus 348 ~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 425 (642)
........|+++|+++++.+.+.. ...+..+.||| ||++|+|+.... .......||.++. + ++
T Consensus 162 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~---~~~~~~~l~~~d~--~-----~~----- 226 (388)
T 3pe7_A 162 YFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGP---HDLVDARMWLINE--D-----GT----- 226 (388)
T ss_dssp GGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSC---TTTSSCSEEEEET--T-----SC-----
T ss_pred hccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecC---CCCCcceEEEEeC--C-----CC-----
Confidence 001223689999999998877766 55678899999 999999998531 1112446777765 3 23
Q ss_pred ceEEccccCC-CCccCcEECCCCCeEEEEeCCCCcee--EEEEECCCCccccceeeCCCCCC------cccceeEecCCC
Q 039497 426 DVKILTKEET-GNNAFPSCSPDGKFLVFRSGRSGHKN--LFVLDAVNGEFNGDIRQLTDGPW------IDTMPSWSPKGD 496 (642)
Q Consensus 426 ~~~~l~~~~~-~~~~~~~~SpDg~~l~~~~~~~g~~~--l~~~d~~~g~~~~~~~~l~~~~~------~~~~~~~spdG~ 496 (642)
..+.+..... ..+..+.|||||++|+|.+.+.+..+ ||++|+.+|+. +.++.... ....+.|||||+
T Consensus 227 ~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~----~~l~~~~~~~~~~~~~~~~~~spdg~ 302 (388)
T 3pe7_A 227 NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN----RQLTSMPACSHLMSNYDGSLMVGDGS 302 (388)
T ss_dssp CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE----EEEEEECCEEEEEECTTSSEEEEEEC
T ss_pred ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce----EEEEcCCCceeeeecCCCCeEccCCC
Confidence 5566665441 13557899999999999887666544 99999999884 55544322 123348999999
Q ss_pred EEEEEecCCCCC-CCCceeEEEEeCCCCceEEeeecCCCCC-C-CcccccccceEEcCCCCEEEEEEecCCcccCCCCCC
Q 039497 497 LIAFSSNRHNPD-NVEAFSLYVIKPDGSGLRRIHVAGPEGS-G-DVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP 573 (642)
Q Consensus 497 ~l~~~~~~~~~~-~~~~~~l~~~d~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~ 573 (642)
+|++...+.... ......||++|+++++.+.++.....-. . ......+..++|||||++|+|.+...+.
T Consensus 303 ~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~-------- 374 (388)
T 3pe7_A 303 DAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGK-------- 374 (388)
T ss_dssp CC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSS--------
T ss_pred cceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCc--------
Confidence 999876431000 0145679999999999888876432000 0 0000014678999999999999977654
Q ss_pred CCCCCCCcEEEEEcCCC
Q 039497 574 NQFQPYGDLYVVKLDGS 590 (642)
Q Consensus 574 ~~~~~~~~l~~~~~~~~ 590 (642)
.+||.+++..+
T Consensus 375 ------~~l~~~~l~~~ 385 (388)
T 3pe7_A 375 ------PALYLATLPES 385 (388)
T ss_dssp ------CEEEEEECCGG
T ss_pred ------eeEEEEECChh
Confidence 38999998754
No 12
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.95 E-value=1.2e-24 Score=259.77 Aligned_cols=479 Identities=12% Similarity=0.039 Sum_probs=301.2
Q ss_pred eeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCccccccccCCCEEEEEEeccCCCcc
Q 039497 36 EHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQI 115 (642)
Q Consensus 36 ~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (642)
...+..|...+...+|| |||++||.. ..+|...||....+. ....+.........-..+.+++.++..+. +
T Consensus 608 ~~~~~~h~~~v~~~~~s-~~~~~l~s~-~~d~~i~vw~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d----- 678 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFS-QDGQRIASC-GADKTLQVFKAETGE-KLLDIKAHEDEVLCCAFSSDDSYIATCSA-D----- 678 (1249)
T ss_dssp SEEECCCSSCEEEEEEC-TTSSEEEEE-ETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEET-T-----
T ss_pred eEEEecccccEEEEEEC-CCCCEEEEE-eCCCeEEEEECCCCC-EEEEeccCCCCEEEEEEecCCCEEEEEeC-C-----
Confidence 34566899999999999 999999854 467888899873332 22222211111110012224555554433 2
Q ss_pred cccccceEEEEccCCceE-ecccCCCccCCceeCCCC--cEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecC
Q 039497 116 FKSWSALYSTDLKASKFT-RLTPYGVVDYSPSVSYSG--KFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCER 192 (642)
Q Consensus 116 ~~~~~~l~~~~~~~~~~~-~lt~~~~~~~~~~~SPDG--~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~ 192 (642)
+.|.++++.+++.. .+..+.......+|+|++ ..++....+. .|.+|++.+++.......+
T Consensus 679 ----~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~------------~v~vwd~~~~~~~~~~~~h 742 (1249)
T 3sfz_A 679 ----KKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF------------FLKLWDLNQKECRNTMFGH 742 (1249)
T ss_dssp ----SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTS------------CEEEEETTSSSEEEEECCC
T ss_pred ----CeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCC------------eEEEEECCCcchhheecCC
Confidence 14666688877654 455555556778999954 4666665544 6999999998866554433
Q ss_pred CC---cceEeeCCeEEEEEecCCCceEEEEEecCCCccccc--------------------------CC-----------
Q 039497 193 GG---WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLG--------------------------FP----------- 232 (642)
Q Consensus 193 ~~---~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~--------------------------~~----------- 232 (642)
.. .+.|+||+.++++. ..+|...+|. +.++..... .+
T Consensus 743 ~~~v~~~~~sp~~~~l~s~-s~dg~v~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~ 819 (1249)
T 3sfz_A 743 TNSVNHCRFSPDDELLASC-SADGTLRLWD--VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN 819 (1249)
T ss_dssp SSCEEEEEECSSTTEEEEE-ESSSEEEEEE--GGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETT
T ss_pred CCCEEEEEEecCCCEEEEE-ECCCeEEEEe--CCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCC
Confidence 32 45999999888877 4577555554 333310000 00
Q ss_pred ----------ccceee-CCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEee--------cCCCCcccCCeecCCC
Q 039497 233 ----------IAPTRV-TPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT--------LNPNFHHYNPFVSANS 293 (642)
Q Consensus 233 ----------~~~~~l-~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~--------~~~~~~~~~~~~spDg 293 (642)
.....+ ..+...+..++|+|+|+.++.... ...+.+||+. ..+...+....|+|||
T Consensus 820 ~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-----dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg 894 (1249)
T 3sfz_A 820 KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS-----QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG 894 (1249)
T ss_dssp EEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECS-----SSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred cEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCceeeecCCCccceEEEEECCCC
Confidence 000000 012223344455555555554322 2367777772 3445556778899999
Q ss_pred CEEEEEEeecCCCCCCcccceEeecc------------------------------------CCCceeEE-eeeCCCccE
Q 039497 294 EFIGYHRFRGESTEGQSTIPHLEPVA------------------------------------SPVKELRM-LRLNGSFPS 336 (642)
Q Consensus 294 ~~l~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~-~~~~~~~~~ 336 (642)
+.++....++. ..+|-.... ........ .........
T Consensus 895 ~~l~s~s~dg~------v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 968 (1249)
T 3sfz_A 895 SSFLTASDDQT------IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCC 968 (1249)
T ss_dssp SEEEEEETTSC------EEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEE
T ss_pred CEEEEEeCCCe------EEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEE
Confidence 98887765443 222221100 00000000 001113467
Q ss_pred EcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCC
Q 039497 337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414 (642)
Q Consensus 337 ~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 414 (642)
|+|+|+.+++... ...|.++++..++...... ...+..+.|+|||+.|+..+. ++.+++|++..
T Consensus 969 ~sp~g~~l~~g~~---~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-------dg~i~vwd~~~---- 1034 (1249)
T 3sfz_A 969 LSPHLEYVAFGDE---DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE-------DSVIQVWNWQT---- 1034 (1249)
T ss_dssp ECTTSSEEEEEET---TSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECS-------SSBEEEEETTT----
T ss_pred EcCCCCEEEEEcC---CCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcC-------CCEEEEEECCC----
Confidence 9999998888654 3678888988877555433 567889999999999988763 68899998854
Q ss_pred CCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecC
Q 039497 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494 (642)
Q Consensus 415 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spd 494 (642)
+ ....+..+. ..+..+.|+|+++.+ ..+. ...|.+||+.+++. ...+..+...+..++|+||
T Consensus 1035 -----~-----~~~~~~~~~-~~v~~~~~~~~~~l~-~~~~---dg~v~vwd~~~~~~---~~~~~~~~~~v~~~~~s~d 1096 (1249)
T 3sfz_A 1035 -----G-----DYVFLQAHQ-ETVKDFRLLQDSRLL-SWSF---DGTVKVWNVITGRI---ERDFTCHQGTVLSCAISSD 1096 (1249)
T ss_dssp -----T-----EEECCBCCS-SCEEEEEECSSSEEE-EEES---SSEEEEEETTTTCC---CEEEECCSSCCCCEEECSS
T ss_pred -----C-----ceEEEecCC-CcEEEEEEcCCCcEE-EEEC---CCcEEEEECCCCce---eEEEcccCCcEEEEEECCC
Confidence 2 333444444 677789999988644 4442 23799999999886 6777777777889999999
Q ss_pred CCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCC
Q 039497 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPN 574 (642)
Q Consensus 495 G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~ 574 (642)
|++|+..+.++. |++||+.+++...... ++.+ .+..++|||||++|+..+.++
T Consensus 1097 ~~~l~s~s~d~~--------v~iwd~~~~~~~~~l~-~h~~-------~v~~~~~s~dg~~lat~~~dg----------- 1149 (1249)
T 3sfz_A 1097 ATKFSSTSADKT--------AKIWSFDLLSPLHELK-GHNG-------CVRCSAFSLDGILLATGDDNG----------- 1149 (1249)
T ss_dssp SSSCEEECCSSC--------CCEECSSSSSCSBCCC-CCSS-------CEEEEEECSSSSEEEEEETTS-----------
T ss_pred CCEEEEEcCCCc--------EEEEECCCcceeeeec-cCCC-------cEEEEEECCCCCEEEEEeCCC-----------
Confidence 999988887664 8999998766433222 3333 578899999999998887664
Q ss_pred CCCCCCcEEEEEcCCCceee-c---------cCCCCCCCCcEEecCCceEEeec
Q 039497 575 QFQPYGDLYVVKLDGSGLRR-L---------TWNGYENGTPAWHPGNQLDLGKL 618 (642)
Q Consensus 575 ~~~~~~~l~~~~~~~~~~~~-l---------t~~~~~~~~~~~s~dg~~~~~~~ 618 (642)
.|.+|++.+++... + ..+...+..++|||||+++++..
T Consensus 1150 ------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~ 1197 (1249)
T 3sfz_A 1150 ------EIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1197 (1249)
T ss_dssp ------CCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES
T ss_pred ------EEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC
Confidence 67777887665332 2 33556678999999999998753
No 13
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=2.5e-24 Score=242.83 Aligned_cols=362 Identities=13% Similarity=0.182 Sum_probs=236.7
Q ss_pred cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecC---------------------------CC
Q 039497 142 DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCER---------------------------GG 194 (642)
Q Consensus 142 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~---------------------------~~ 194 (642)
...++|||||++|||.+... .......|++|++.+++.++++... ..
T Consensus 39 ~~~~~~SpdG~~la~~~~~d------~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 39 LMKPKVAPDGSRVTFLRGKD------SDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CEEEEECTTSSEEEEEECCS------SCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESC
T ss_pred CCCceEecCCCEEEEEeccC------CCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 45689999999999987622 0012458999999999988877532 13
Q ss_pred cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEE
Q 039497 195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIY 274 (642)
Q Consensus 195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~ 274 (642)
.++|||||+.+++... ..|+.+++.++.. ....+++.+...+..++|||||++|+++... .|++|
T Consensus 113 ~~~~SpDg~~l~~~~~----~~i~~~d~~~~~~-----~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~------~i~~~ 177 (741)
T 2ecf_A 113 DYQWSPDAQRLLFPLG----GELYLYDLKQEGK-----AAVRQLTHGEGFATDAKLSPKGGFVSFIRGR------NLWVI 177 (741)
T ss_dssp CCEECTTSSEEEEEET----TEEEEEESSSCST-----TSCCBCCCSSSCEEEEEECTTSSEEEEEETT------EEEEE
T ss_pred eeEECCCCCEEEEEeC----CcEEEEECCCCCc-----ceEEEcccCCcccccccCCCCCCEEEEEeCC------cEEEE
Confidence 5799999975555422 3888888887610 0124555555567789999999999997532 78888
Q ss_pred EeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCC---
Q 039497 275 DLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFE--- 351 (642)
Q Consensus 275 d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~--- 351 (642)
|+...... .+..++..-++. + ...|+.. .. ......+.|||||++|+|.....
T Consensus 178 d~~~g~~~-----~~~~~~~~~~~~---g-------~~~~v~~-----~~----~~~~~~~~~SpDg~~l~~~~~d~~~~ 233 (741)
T 2ecf_A 178 DLASGRQM-----QLTADGSTTIGN---G-------IAEFVAD-----EE----MDRHTGYWWAPDDSAIAYARIDESPV 233 (741)
T ss_dssp ETTTTEEE-----ECCCCCCSSEEE---S-------CCCHHHH-----HH----SCCCCSEEECTTSSCEEEEEEECTTS
T ss_pred ecCCCCEE-----EeccCCccceec---c-------ccceeee-----ec----cccccceEECCCCCEEEEEEEcCCCC
Confidence 87321100 000000000000 0 0000000 00 00124679999999999975422
Q ss_pred ---------------------------CceeEEEEECCC-CCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccC
Q 039497 352 ---------------------------LNAGIKIAKSDG-SKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSE 399 (642)
Q Consensus 352 ---------------------------~~~~l~~~d~~~-~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~ 399 (642)
....|+++|+++ ++...+.. ...+..+.| |||++|++.... ..
T Consensus 234 ~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~----~~ 308 (741)
T 2ecf_A 234 PVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQS----RD 308 (741)
T ss_dssp CEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEE----TT
T ss_pred ceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEec----cc
Confidence 223899999998 88766653 245678899 999999988742 12
Q ss_pred CCeEEEEEEEeecCCCCCCCCCccccceEEccccCC-C---CccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccc
Q 039497 400 RATVQIARVSFQLDPSDDNNREEIPCDVKILTKEET-G---NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGD 475 (642)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~---~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~ 475 (642)
.....|+.++. . ++ ....+..... . ....++|||||+ +++.+.+++..+||.++.+++ .
T Consensus 309 ~~~~~i~~~d~--~-----~g-----~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~~-~--- 371 (741)
T 2ecf_A 309 QKKLDLVEVTL--A-----SN-----QQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKGK-A--- 371 (741)
T ss_dssp SSEEEEEEEET--T-----TC-----CEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSSC-E---
T ss_pred CCeEEEEEEEC--C-----CC-----ceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCCC-e---
Confidence 34455666655 2 23 3333332221 1 335799999999 667777778889999998755 4
Q ss_pred eeeCCCCCCcccce-eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCC
Q 039497 476 IRQLTDGPWIDTMP-SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554 (642)
Q Consensus 476 ~~~l~~~~~~~~~~-~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~ 554 (642)
+.|+.+...+..+ .|||||++|++.+.... ....+||.++++++..+.++. .. .+..+.|||||+
T Consensus 372 -~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~---~~~~~l~~~~~~g~~~~~l~~---~~-------~~~~~~~spdg~ 437 (741)
T 2ecf_A 372 -AALTHGNWSVDELLAVDEKAGLAYFRAGIES---ARESQIYAVPLQGGQPQRLSK---AP-------GMHSASFARNAS 437 (741)
T ss_dssp -EESCCSSSCEEEEEEEETTTTEEEEEECSSC---TTCBEEEEEETTCCCCEECCC---SC-------SEEEEEECTTSS
T ss_pred -eeeeecceEEEeEeEEeCCCCEEEEEEeCCC---CceEEEEEEEcCCCCeeeccc---CC-------CceEEEECCCCC
Confidence 8888776666666 59999999999887542 135678888887777777764 12 356899999999
Q ss_pred EEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccC
Q 039497 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW 597 (642)
Q Consensus 555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~ 597 (642)
+|++....... ...+|+++.+++..+.|+.
T Consensus 438 ~l~~~~~~~~~-------------p~~~~l~~~~~~~~~~l~~ 467 (741)
T 2ecf_A 438 VYVDSWSNNST-------------PPQIELFRANGEKIATLVE 467 (741)
T ss_dssp EEEEEEEETTE-------------EEEEEEEETTSCEEECSSC
T ss_pred EEEEEecCCCC-------------CCeEEEEEcCCCeEEEecc
Confidence 99988765432 2379999988877766664
No 14
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=2.8e-24 Score=224.40 Aligned_cols=314 Identities=14% Similarity=0.123 Sum_probs=224.7
Q ss_pred ccccceeecCCcEEEEEEe----ccCCceeeEEEEEe--ecCCCC----------cccCCeec--------------CCC
Q 039497 244 HCFTPAAFHDGKRLAVATR----RKNRNFRHIEIYDL--TLNPNF----------HHYNPFVS--------------ANS 293 (642)
Q Consensus 244 ~~~~~~~SpdG~~l~~~~~----~~~~~~~~i~~~d~--~~~~~~----------~~~~~~~s--------------pDg 293 (642)
.+....|++.|..+++... ..+.....+++||+ ..+... .....+++ +.+
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~ 143 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR 143 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence 4556778888876664432 12334457899998 543311 01111122 237
Q ss_pred CEEEEEEeecCCCCCCcccceEeeccCCC-ceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-
Q 039497 294 EFIGYHRFRGESTEGQSTIPHLEPVASPV-KELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK- 371 (642)
Q Consensus 294 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~- 371 (642)
++++|........ ....+++..+++.. ..+.........++|||||++|++.+...+...|+++|+++++...+..
T Consensus 144 ~~l~~~s~~~~~~--~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~ 221 (415)
T 2hqs_A 144 TRIAYVVQTNGGQ--FPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF 221 (415)
T ss_dssp CEEEEEEECSSSS--CCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC
T ss_pred CEEEEEEecCCCC--ccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecC
Confidence 8888887653210 00234555555432 2222111223568999999999998876566899999999988777665
Q ss_pred cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEE
Q 039497 372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451 (642)
Q Consensus 372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~ 451 (642)
...+..+.|||||++|+++... ++...||.++. . ++ ....+..+. ..+..+.|||||++|+
T Consensus 222 ~~~~~~~~~spdg~~la~~~~~------~g~~~i~~~d~--~-----~~-----~~~~l~~~~-~~~~~~~~spdg~~l~ 282 (415)
T 2hqs_A 222 PRHNGAPAFSPDGSKLAFALSK------TGSLNLYVMDL--A-----SG-----QIRQVTDGR-SNNTEPTWFPDSQNLA 282 (415)
T ss_dssp SSCEEEEEECTTSSEEEEEECT------TSSCEEEEEET--T-----TC-----CEEECCCCS-SCEEEEEECTTSSEEE
T ss_pred CCcccCEEEcCCCCEEEEEEec------CCCceEEEEEC--C-----CC-----CEEeCcCCC-CcccceEECCCCCEEE
Confidence 5567899999999999988742 33434454444 2 23 556777665 6778899999999999
Q ss_pred EEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec
Q 039497 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA 531 (642)
Q Consensus 452 ~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 531 (642)
+.+.+++..+||++|+.+++. +.++.....+..++|||||++|++.+... +...|++||+++++.+.++..
T Consensus 283 ~~s~~~g~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~spdG~~l~~~~~~~-----g~~~i~~~d~~~~~~~~l~~~ 353 (415)
T 2hqs_A 283 FTSDQAGRPQVYKVNINGGAP----QRITWEGSQNQDADVSSDGKFMVMVSSNG-----GQQHIAKQDLATGGVQVLSST 353 (415)
T ss_dssp EEECTTSSCEEEEEETTSSCC----EECCCSSSEEEEEEECTTSSEEEEEEECS-----SCEEEEEEETTTCCEEECCCS
T ss_pred EEECCCCCcEEEEEECCCCCE----EEEecCCCcccCeEECCCCCEEEEEECcC-----CceEEEEEECCCCCEEEecCC
Confidence 999877778999999998874 77776656677899999999999998754 346799999999888776542
Q ss_pred CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCC
Q 039497 532 GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGN 611 (642)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg 611 (642)
. .+..+.|+|||+.|++.+.+++.. .||+|+++++..++|+.+.+.+.+++|||--
T Consensus 354 ~----------~~~~~~~spdg~~l~~~s~~~~~~--------------~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 354 F----------LDETPSLAPNGTMVIYSSSQGMGS--------------VLNLVSTDGRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp S----------SCEEEEECTTSSEEEEEEEETTEE--------------EEEEEETTSCCEEECCCSSSEEEEEEECCCC
T ss_pred C----------CcCCeEEcCCCCEEEEEEcCCCcc--------------EEEEEECCCCcEEEeeCCCCCCcCCcccccc
Confidence 2 357899999999999998776532 7999999999999999988888999999964
No 15
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=1.5e-23 Score=236.49 Aligned_cols=318 Identities=9% Similarity=0.042 Sum_probs=202.4
Q ss_pred cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCC---CceeEeecCC--CcceEeeCCeEEEEEecCCCceE
Q 039497 142 DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDP---NKRVIVCERG--GWPTWSGDSTIYFHRQADDGWWS 216 (642)
Q Consensus 142 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~l~~~~~--~~~~wspdg~~~~~~~~~~g~~~ 216 (642)
...++|||||++||+... ..|++|++.++ +.++++.... ..++|||||+.++... ++ +
T Consensus 111 v~~~~~SpDg~~l~~~~~-------------~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~--~~--~ 173 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG-------------GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR--GR--N 173 (741)
T ss_dssp SCCCEECTTSSEEEEEET-------------TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE--TT--E
T ss_pred cceeEECCCCCEEEEEeC-------------CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe--CC--c
Confidence 456899999999999875 37999999998 7777765433 3579999997444432 23 8
Q ss_pred EEEEecCCCcccccCCccceeeCCCCCc-----------------cccceeecCCcEEEEEEeccCCceeeEEEEEeecC
Q 039497 217 IFRVSFPENLEFLGFPIAPTRVTPPGVH-----------------CFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLN 279 (642)
Q Consensus 217 l~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~ 279 (642)
|+.+++.++ ...+++..+.. ...++|||||++|++...+.+... . ++.
T Consensus 174 i~~~d~~~g--------~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~-~---~~~--- 238 (741)
T 2ecf_A 174 LWVIDLASG--------RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVP-V---QKR--- 238 (741)
T ss_dssp EEEEETTTT--------EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSC-E---EEE---
T ss_pred EEEEecCCC--------CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCc-e---Eec---
Confidence 999999887 55666554322 367899999999999865542111 1 110
Q ss_pred CCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC-CC-ceeEEe---eeCCCccEEcCCCCEEEEEec--CCC
Q 039497 280 PNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS-PV-KELRML---RLNGSFPSFSPDGGLIVFNHD--FEL 352 (642)
Q Consensus 280 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~---~~~~~~~~~spdg~~l~~~~~--~~~ 352 (642)
..+.|++....-.+.......+....+++..+.. .. ..+... ......+.| |||++|++... ...
T Consensus 239 -------~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~ 310 (741)
T 2ecf_A 239 -------YEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQK 310 (741)
T ss_dssp -------EEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSS
T ss_pred -------CCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCC
Confidence 0111221111111110000001111223333222 11 111000 001135689 99999998653 234
Q ss_pred ceeEEEEECCCCCeeEEee-cC-----CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccc
Q 039497 353 NAGIKIAKSDGSKRWTLIK-DR-----TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD 426 (642)
Q Consensus 353 ~~~l~~~d~~~~~~~~l~~-~~-----~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 426 (642)
...|+++|+++++...+.. .. .+..+.|||||+ +++.+. .++..+||.++. .+ .
T Consensus 311 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~------~~g~~~l~~~~~--------~~-----~ 370 (741)
T 2ecf_A 311 KLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSE------RTGFQHLYRIDS--------KG-----K 370 (741)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEEC------TTSSCEEEEECS--------SS-----C
T ss_pred eEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEec------CCCccEEEEEcC--------CC-----C
Confidence 6789999999998777665 11 345899999999 555553 256678888876 23 3
Q ss_pred eEEccccCCCCccCc-EECCCCCeEEEEeCCCC--ceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEec
Q 039497 427 VKILTKEETGNNAFP-SCSPDGKFLVFRSGRSG--HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN 503 (642)
Q Consensus 427 ~~~l~~~~~~~~~~~-~~SpDg~~l~~~~~~~g--~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~ 503 (642)
.+.++.+. ..+..+ .|||||++|++.+..++ ..+||.++..++. ++.|+.. ..+..+.|||||++|++...
T Consensus 371 ~~~l~~~~-~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~----~~~l~~~-~~~~~~~~spdg~~l~~~~~ 444 (741)
T 2ecf_A 371 AAALTHGN-WSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQ----PQRLSKA-PGMHSASFARNASVYVDSWS 444 (741)
T ss_dssp EEESCCSS-SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCC----CEECCCS-CSEEEEEECTTSSEEEEEEE
T ss_pred eeeeeecc-eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCC----eeecccC-CCceEEEECCCCCEEEEEec
Confidence 45666655 455555 59999999999887665 5578888876544 4777763 44568899999999999876
Q ss_pred CCCCCCCCceeEEEEeCCCCceEEee
Q 039497 504 RHNPDNVEAFSLYVIKPDGSGLRRIH 529 (642)
Q Consensus 504 ~~~~~~~~~~~l~~~d~~~~~~~~l~ 529 (642)
... ....+++++++++..+.++
T Consensus 445 ~~~----~p~~~~l~~~~~~~~~~l~ 466 (741)
T 2ecf_A 445 NNS----TPPQIELFRANGEKIATLV 466 (741)
T ss_dssp ETT----EEEEEEEEETTSCEEECSS
T ss_pred CCC----CCCeEEEEEcCCCeEEEec
Confidence 543 5678999999877665554
No 16
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=1.5e-23 Score=235.77 Aligned_cols=347 Identities=13% Similarity=0.107 Sum_probs=220.0
Q ss_pred cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC------CcceEeeCCeEEEEEecCCC--
Q 039497 142 DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG------GWPTWSGDSTIYFHRQADDG-- 213 (642)
Q Consensus 142 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~------~~~~wspdg~~~~~~~~~~g-- 213 (642)
...++|||||++|+. .. ...|++|++.+++.+++..... ..++|||||+.++......+
T Consensus 19 ~~~~~~spdg~~~~~-~~------------dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~ 85 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQ------------KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIY 85 (723)
T ss_dssp CCCCCBSSSSCBCCC-CS------------SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCS
T ss_pred ccccEEcCCCcEEEE-eC------------CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccce
Confidence 456899999996653 22 2279999999999887776433 34699999975544422221
Q ss_pred ----ceEEEEEecCCCcccccCCccceeeCCCC---CccccceeecCCcEEEEEEeccCCceeeEEEEEeecCC------
Q 039497 214 ----WWSIFRVSFPENLEFLGFPIAPTRVTPPG---VHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNP------ 280 (642)
Q Consensus 214 ----~~~l~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~------ 280 (642)
...|+.+++.++ ...++.... ..+..++|||||++|+|... ..|++||+..+.
T Consensus 86 ~~~~~~~i~~~d~~~~--------~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~------~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 86 QHSYTGYYVLSKIPHG--------DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE------NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp SSCCCSEEEEEESSSC--------CCEECCCTTCCSCCCSBCCBCSSTTCEEEEET------TEEEEESSSSSCCEEEEC
T ss_pred eecceeeEEEEECCCC--------ceEeccCCccccccccccEECCCCCEEEEEEC------CeEEEEECCCCceEEEec
Confidence 148999999888 445565432 23677999999999999764 278898873211
Q ss_pred --CC------------------cccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCC
Q 039497 281 --NF------------------HHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPD 340 (642)
Q Consensus 281 --~~------------------~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd 340 (642)
.. ....+.|||||++|++...+... ...+......... ........++++
T Consensus 152 ~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~~~~~ 221 (723)
T 1xfd_A 152 TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSR-----VPIMELPTYTGSI-----YPTVKPYHYPKA 221 (723)
T ss_dssp CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTT-----SCEEEECCCSSSS-----SCCCEEEECCBT
T ss_pred CCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCc-----cceEEeeccCCcC-----CCcceeccCCCC
Confidence 11 11458999999999998776542 1112111110000 001122345555
Q ss_pred CCEEEEEecCCCceeEEEEECCCCCe-eEEee-------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497 341 GGLIVFNHDFELNAGIKIAKSDGSKR-WTLIK-------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412 (642)
Q Consensus 341 g~~l~~~~~~~~~~~l~~~d~~~~~~-~~l~~-------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (642)
|.. .....|+++|+++++. ..+.. ...+..+.|||||+.|++.... ......|+.++.
T Consensus 222 G~~-------~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~-----~~~~~~i~~~d~-- 287 (723)
T 1xfd_A 222 GSE-------NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNR-----AQNVSILTLCDA-- 287 (723)
T ss_dssp TSC-------CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEET-----TSCEEEEEEEET--
T ss_pred CCC-------CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcC-----CCCeEEEEEEeC--
Confidence 541 2346899999998874 44442 2345679999999988776542 123344555544
Q ss_pred CCCCCCCCCccccceEEcc-ccCCCCc----cCcEECCCCCeEEEE-eCCCC----ceeEEEEE-CCCCc---cccceee
Q 039497 413 DPSDDNNREEIPCDVKILT-KEETGNN----AFPSCSPDGKFLVFR-SGRSG----HKNLFVLD-AVNGE---FNGDIRQ 478 (642)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~-~~~~~~~----~~~~~SpDg~~l~~~-~~~~g----~~~l~~~d-~~~g~---~~~~~~~ 478 (642)
. ++ ....+. ......+ ..++|||||++|++. +.+++ ..+||++| ..+++ . +.
T Consensus 288 ~-----~g-----~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~----~~ 353 (723)
T 1xfd_A 288 T-----TG-----VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNI----QS 353 (723)
T ss_dssp T-----TC-----CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCC----CB
T ss_pred C-----CC-----cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccce----eE
Confidence 2 23 333332 2211222 378999999999997 65555 56899999 56665 4 66
Q ss_pred CCCCCCcccc-eeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC-ceEEeeecC-CCCCCCcccccccceEEcCCCCE
Q 039497 479 LTDGPWIDTM-PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS-GLRRIHVAG-PEGSGDVDRERINHVCFSADGEW 555 (642)
Q Consensus 479 l~~~~~~~~~-~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~-~~~~~~~~~~~~~~~~~S~Dg~~ 555 (642)
|+.+...+.. ++|||||++|+|.+.... ....+||.++++++ +.+.++... ... .+..++|||||++
T Consensus 354 l~~~~~~~~~~~~~spdg~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~spdg~~ 423 (723)
T 1xfd_A 354 ITSGDWDVTKILAYDEKGNKIYFLSTEDL---PRRRQLYSANTVGNFNRQCLSCDLVENC-------TYFSASFSHSMDF 423 (723)
T ss_dssp SCCSSSCEEEEEEEETTTTEEEEEESSSC---TTCCEEEEECSSTTCCCBCSSTTSSSSC-------CCCEEEECTTSSE
T ss_pred eecCCeEEEeeeEEcCCCCEEEEEEcCCC---CcceEEEEEeCCCCCCcceecccccCCC-------CeEEEEECCCCCE
Confidence 7755444443 699999999999887642 14567888888765 344444210 122 3567999999999
Q ss_pred EEEEEecC
Q 039497 556 LLFTANLG 563 (642)
Q Consensus 556 l~~~~~~~ 563 (642)
|++.....
T Consensus 424 l~~~~~~~ 431 (723)
T 1xfd_A 424 FLLKCEGP 431 (723)
T ss_dssp EEEECCSS
T ss_pred EEEEccCC
Confidence 99876544
No 17
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=3.6e-24 Score=240.83 Aligned_cols=334 Identities=12% Similarity=0.152 Sum_probs=211.3
Q ss_pred cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeC-CCCC---ccccceeecCCcEEEEEEeccCC----
Q 039497 195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVT-PPGV---HCFTPAAFHDGKRLAVATRRKNR---- 266 (642)
Q Consensus 195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~-~~~~---~~~~~~~SpdG~~l~~~~~~~~~---- 266 (642)
.++|||||++++. ..+| .|+.++..++ +...+. .+.. .+..++|||||++|++.......
T Consensus 21 ~~~~spdg~~~~~--~~dg--~i~~~d~~~g--------~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~ 88 (723)
T 1xfd_A 21 EAKWISDTEFIYR--EQKG--TVRLWNVETN--------TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHS 88 (723)
T ss_dssp CCCBSSSSCBCCC--CSSS--CEEEBCGGGC--------CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSC
T ss_pred ccEEcCCCcEEEE--eCCC--CEEEEECCCC--------cEEEEeccccccccccceEEECCCCCEEEEEecCccceeec
Confidence 4799999986654 3456 7888888887 334443 3332 37789999999999998654321
Q ss_pred ceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEE
Q 039497 267 NFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVF 346 (642)
Q Consensus 267 ~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 346 (642)
....+++||+..... ..+.... ........+.|||||++|+|
T Consensus 89 ~~~~i~~~d~~~~~~----------------------------------~~l~~~~----~~~~~~~~~~~SPdG~~la~ 130 (723)
T 1xfd_A 89 YTGYYVLSKIPHGDP----------------------------------QSLDPPE----VSNAKLQYAGWGPKGQQLIF 130 (723)
T ss_dssp CCSEEEEEESSSCCC----------------------------------EECCCTT----CCSCCCSBCCBCSSTTCEEE
T ss_pred ceeeEEEEECCCCce----------------------------------EeccCCc----cccccccccEECCCCCEEEE
Confidence 235777777632110 0000000 00001236789999999999
Q ss_pred EecCCCceeEEEEECCCCCeeEEeec--CCc------------------eeeeeecCCCEEEEEEcCCCcc---------
Q 039497 347 NHDFELNAGIKIAKSDGSKRWTLIKD--RTA------------------FYNSWSPTEKHVIYTSTGPIFQ--------- 397 (642)
Q Consensus 347 ~~~~~~~~~l~~~d~~~~~~~~l~~~--~~~------------------~~~~~spdg~~l~~~~~~~~~~--------- 397 (642)
.+. .+|+++++++++.++++.. ..+ ..+.|||||++|++.+......
T Consensus 131 ~~~----~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~ 206 (723)
T 1xfd_A 131 IFE----NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT 206 (723)
T ss_dssp EET----TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS
T ss_pred EEC----CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccC
Confidence 875 5899999999988887762 222 5799999999999987531000
Q ss_pred ----------------cCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC-----CCCccCcEECCCCCeEEEEeCC
Q 039497 398 ----------------SERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE-----TGNNAFPSCSPDGKFLVFRSGR 456 (642)
Q Consensus 398 ----------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~SpDg~~l~~~~~~ 456 (642)
.......|+.++. . ++. ....+.... ...+..++|||||+.|++...+
T Consensus 207 ~~~~~~~~~~~~~~~G~~~~~~~l~~~d~--~-----~~~----~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~ 275 (723)
T 1xfd_A 207 GSIYPTVKPYHYPKAGSENPSISLHVIGL--N-----GPT----HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNR 275 (723)
T ss_dssp SSSSCCCEEEECCBTTSCCCEEEEEEEES--S-----SSC----CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEET
T ss_pred CcCCCcceeccCCCCCCCCCeeEEEEEEC--C-----CCc----eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcC
Confidence 0011223444433 2 121 234454321 1345678999999988776654
Q ss_pred -CCceeEEEEECCCCccccceeeCC-C-CCCcc----cceeEecCCCEEEEE-ecCCCCCCCCceeEEEEe-CCCCc---
Q 039497 457 -SGHKNLFVLDAVNGEFNGDIRQLT-D-GPWID----TMPSWSPKGDLIAFS-SNRHNPDNVEAFSLYVIK-PDGSG--- 524 (642)
Q Consensus 457 -~g~~~l~~~d~~~g~~~~~~~~l~-~-~~~~~----~~~~~spdG~~l~~~-~~~~~~~~~~~~~l~~~d-~~~~~--- 524 (642)
.....|+++|+.+|+. ..+. . ....+ ..+.|||||++|++. +.... ......+||++| ..+++
T Consensus 276 ~~~~~~i~~~d~~~g~~----~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~-~~~~~~~l~~~d~~~~~~~~~ 350 (723)
T 1xfd_A 276 AQNVSILTLCDATTGVC----TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQG-GRGKFYHITVSSSQPNSSNDN 350 (723)
T ss_dssp TSCEEEEEEEETTTCCE----EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCS-SSSCEEEEEEECSSCCSSSCC
T ss_pred CCCeEEEEEEeCCCCcc----eEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccC-CCcceeEEEEEeccCCCCccc
Confidence 3456899999998884 4432 1 11222 378999999999987 43321 011256899999 57766
Q ss_pred eEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC-ceeeccC---CCC
Q 039497 525 LRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS-GLRRLTW---NGY 600 (642)
Q Consensus 525 ~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lt~---~~~ 600 (642)
.+.++.... . ....++|||||++|+|.+.+... ...+||.++++++ ..+.|+. +..
T Consensus 351 ~~~l~~~~~-~-------~~~~~~~spdg~~l~~~~~~~~~------------~~~~l~~~~~~~~~~~~~l~~~~~~~~ 410 (723)
T 1xfd_A 351 IQSITSGDW-D-------VTKILAYDEKGNKIYFLSTEDLP------------RRRQLYSANTVGNFNRQCLSCDLVENC 410 (723)
T ss_dssp CCBSCCSSS-C-------EEEEEEEETTTTEEEEEESSSCT------------TCCEEEEECSSTTCCCBCSSTTSSSSC
T ss_pred eeEeecCCe-E-------EEeeeEEcCCCCEEEEEEcCCCC------------cceEEEEEeCCCCCCcceecccccCCC
Confidence 666653221 1 12236899999999999876411 0237888888775 4666775 345
Q ss_pred CCCCcEEecCCceEEeec
Q 039497 601 ENGTPAWHPGNQLDLGKL 618 (642)
Q Consensus 601 ~~~~~~~s~dg~~~~~~~ 618 (642)
.+..++|||||++++...
T Consensus 411 ~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 411 TYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp CCCEEEECTTSSEEEEEC
T ss_pred CeEEEEECCCCCEEEEEc
Confidence 567899999998886543
No 18
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.92 E-value=1.9e-22 Score=222.11 Aligned_cols=501 Identities=10% Similarity=0.010 Sum_probs=291.5
Q ss_pred cceEEEEeecCCceeeeEEEecCCCCCCCCCceeeecCCcee-eeeceecCC--CCCeEEEEEccCCCcceEEEcCC---
Q 039497 4 KGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSI-NFNAQFVDG--QDQTIAFISERSGSPRIYQTRPG--- 77 (642)
Q Consensus 4 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~-~~~~~~S~p--DG~~laf~~~~~g~~~l~~~~~~--- 77 (642)
|+.|++. .++.|.+.++.....+.....++..|... ....+|+ | ||++||.. ..+|...||.+..+
T Consensus 30 g~~l~~~------~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~s-p~~~~~~l~s~-~~dg~v~vw~~~~~~~~ 101 (615)
T 1pgu_A 30 TNAIAYP------CGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFS-PIKGSQYLCSG-DESGKVIVWGWTFDKES 101 (615)
T ss_dssp TTEEEEE------ETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEEC-SSTTCCEEEEE-ETTSEEEEEEEEEEGGG
T ss_pred CCEEEEe------cCCeEEEEECCCCCCccccceEEecCCCceEEEEEEC-cCCCCCEEEEe-cCCCEEEEEeCCCCccc
Confidence 5566776 34566666665500011356788899999 9999999 9 99999854 45888999988432
Q ss_pred ----CCcccccCCCCCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCc-
Q 039497 78 ----SSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGK- 152 (642)
Q Consensus 78 ----g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~- 152 (642)
......+.........-..+.+++.++........ .+.|+.++ .+.....+..+.......+|+|||+
T Consensus 102 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~------~~~v~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~ 174 (615)
T 1pgu_A 102 NSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN------FGVFISWD-SGNSLGEVSGHSQRINACHLKQSRPM 174 (615)
T ss_dssp TEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSC------SEEEEETT-TCCEEEECCSCSSCEEEEEECSSSSC
T ss_pred ccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCC------ccEEEEEE-CCCcceeeecCCccEEEEEECCCCCc
Confidence 11111111101100000122256666665543211 12577666 3445566666666667789999998
Q ss_pred EEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC------cceEeeC-CeEEEEEecCCCceEEEEEecCCC
Q 039497 153 FIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG------WPTWSGD-STIYFHRQADDGWWSIFRVSFPEN 225 (642)
Q Consensus 153 ~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~------~~~wspd-g~~~~~~~~~~g~~~l~~~~~~~~ 225 (642)
.|+....+. .|.+|++.+++.......+.. .++|+|+ +.++++. ..+| .|..+++.++
T Consensus 175 ~l~~~~~d~------------~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg--~i~vwd~~~~ 239 (615)
T 1pgu_A 175 RSMTVGDDG------------SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV-GSDR--KISCFDGKSG 239 (615)
T ss_dssp EEEEEETTT------------EEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEE-ETTC--CEEEEETTTC
T ss_pred EEEEEeCCC------------cEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEE-eCCC--eEEEEECCCC
Confidence 577766555 788999888765554442222 3599999 8888877 4567 4555566666
Q ss_pred cccccCCccceee-C---CCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCC------------CCcccCCee
Q 039497 226 LEFLGFPIAPTRV-T---PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNP------------NFHHYNPFV 289 (642)
Q Consensus 226 ~~~~~~~~~~~~l-~---~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~------------~~~~~~~~~ 289 (642)
. ....+ . .+...+..++|+ +|++|+....++ .+.+||+.... ........|
T Consensus 240 ~-------~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (615)
T 1pgu_A 240 E-------FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA-----TIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA 306 (615)
T ss_dssp C-------EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS-----EEEEEETTTTEEEEEEECCTTCGGGCEEEEEE
T ss_pred C-------EeEEecccccccCCceEEEEEc-CCCEEEEEcCCC-----cEEEEECCCCcEEEEEcCCCCcccCceeEEEe
Confidence 3 33444 3 555677788999 999998866544 79999983211 112223344
Q ss_pred cCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeee---CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCe
Q 039497 290 SANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRL---NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR 366 (642)
Q Consensus 290 spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~ 366 (642)
+ +++.++....++. ..+| .+... ..+..... ....+.| |+ ++.... ...|.++++. .
T Consensus 307 ~-~~~~l~~~~~~g~------i~~~--d~~~~-~~~~~~~~~~~~v~~~~~-~~---l~~~~~---dg~i~~w~~~--~- 366 (615)
T 1pgu_A 307 T-GNGRIISLSLDGT------LNFY--ELGHD-EVLKTISGHNKGITALTV-NP---LISGSY---DGRIMEWSSS--S- 366 (615)
T ss_dssp E-ETTEEEEEETTSC------EEEE--ETTEE-EEEEEECCCSSCEEEEET-TT---TEEEET---TSCEEETTTT--E-
T ss_pred C-CCCeEEEEECCCC------EEEE--ECCCC-cEEEEEeCCCCCEEEEEe-cC---cEEECC---CCeEEEEEch--h-
Confidence 3 7777776654433 2222 21111 01111100 1123345 54 333322 2344444443 1
Q ss_pred eEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecC------------CCC-------------CCCCC
Q 039497 367 WTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD------------PSD-------------DNNRE 421 (642)
Q Consensus 367 ~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~------------~~~-------------~~~~~ 421 (642)
........+..+.| ++++.|+..+. ++.+.+|++....- +.. ...+.
T Consensus 367 ~~~~~~~~v~~~~~-~~~~~l~~~~~-------d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 438 (615)
T 1pgu_A 367 MHQDHSNLIVSLDN-SKAQEYSSISW-------DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD 438 (615)
T ss_dssp EECCCCSCEEEEEC-CSTTCCEEEET-------TTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCC
T ss_pred hcCcccCceEEEEE-CCCcEEEEEeC-------CCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCc
Confidence 11111233444444 33334443332 33344443322000 000 00010
Q ss_pred ccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccce-eeCCCCCCcccceeEecCCCEEEE
Q 039497 422 EIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI-RQLTDGPWIDTMPSWSPKGDLIAF 500 (642)
Q Consensus 422 ~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~ 500 (642)
....+. .. ..+..+.|+ +++|+..... ...|++|++.+++. . ..+..+...+..++|+|||++|+.
T Consensus 439 ----~~~~~~-~~-~~~~~~~~~--~~~l~~~~~~--d~~i~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~g~~l~~ 505 (615)
T 1pgu_A 439 ----IIKSVR-LN-SPGSAVSLS--QNYVAVGLEE--GNTIQVFKLSDLEV---SFDLKTPLRAKPSYISISPSETYIAA 505 (615)
T ss_dssp ----EEEEEE-CS-SCEEEEEEC--SSEEEEEETT--TSCEEEEETTEEEE---EEECSSCCSSCEEEEEECTTSSEEEE
T ss_pred ----eeeecc-cC-CCceEEEEc--CCEEEEeecC--CCeEEEEECCCccc---cccccCCccCceEEEEECCCCCEEEE
Confidence 222222 22 456667888 7788777641 34799999987763 2 445556667888999999999999
Q ss_pred EecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcC----------CCCEEEEEEecCCcccCCC
Q 039497 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSA----------DGEWLLFTANLGAVMAEPV 570 (642)
Q Consensus 501 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~----------Dg~~l~~~~~~~~~~~~~~ 570 (642)
.+.++. |++||+.+++........+.. .+..+.|+| ||++|+..+.++
T Consensus 506 ~~~dg~--------i~iw~~~~~~~~~~~~~~h~~-------~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg------- 563 (615)
T 1pgu_A 506 GDVMGK--------ILLYDLQSREVKTSRWAFRTS-------KINAISWKPAEKGANEEEIEEDLVATGSLDT------- 563 (615)
T ss_dssp EETTSC--------EEEEETTTTEEEECCSCCCSS-------CEEEEEECCCC------CCSCCEEEEEETTS-------
T ss_pred cCCCCe--------EEEeeCCCCcceeEeecCCCC-------ceeEEEEcCccccccccccCCCEEEEEcCCC-------
Confidence 887765 999999887665433211344 678999999 999998887664
Q ss_pred CCCCCCCCCCcEEEEEcCCC--ceeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497 571 SWPNQFQPYGDLYVVKLDGS--GLRRLTWNGYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 571 ~~~~~~~~~~~l~~~~~~~~--~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
.|++|++..+ .+..+..+...+..++|+||++ +++....+
T Consensus 564 ----------~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~ 605 (615)
T 1pgu_A 564 ----------NIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADA 605 (615)
T ss_dssp ----------CEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTS
T ss_pred ----------cEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCc
Confidence 7888888775 4666777777888999999999 87765443
No 19
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.92 E-value=6.3e-23 Score=230.70 Aligned_cols=350 Identities=11% Similarity=0.071 Sum_probs=227.3
Q ss_pred ceEEEEccCCceEecccCCCc-c---C--CceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC-
Q 039497 121 ALYSTDLKASKFTRLTPYGVV-D---Y--SPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG- 193 (642)
Q Consensus 121 ~l~~~~~~~~~~~~lt~~~~~-~---~--~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~- 193 (642)
.|+++++.+++.+.+...... . . .++|||||++|||......+|... ...++|+|++.+++.++++....
T Consensus 37 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~---~~~~~~~~d~~~~~~~~l~~~~~~ 113 (740)
T 4a5s_A 37 NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHS---YTASYDIYDLNKRQLITEERIPNN 113 (740)
T ss_dssp EEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSC---EEEEEEEEETTTTEECCSSCCCTT
T ss_pred cEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEc---cceEEEEEECCCCcEEEcccCCCc
Confidence 688889999987776543321 1 1 267899999999998765444322 35689999999999888766433
Q ss_pred -CcceEeeCCe-EEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCc-------------------cccceeec
Q 039497 194 -GWPTWSGDST-IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVH-------------------CFTPAAFH 252 (642)
Q Consensus 194 -~~~~wspdg~-~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~Sp 252 (642)
..++|||||+ ++|+. ++ +||.++..++ ...+++..+.. ...+.|||
T Consensus 114 ~~~~~~SPdG~~la~~~---~~--~i~~~~~~~~--------~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp 180 (740)
T 4a5s_A 114 TQWVTWSPVGHKLAYVW---NN--DIYVKIEPNL--------PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP 180 (740)
T ss_dssp EEEEEECSSTTCEEEEE---TT--EEEEESSTTS--------CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT
T ss_pred ceeeEECCCCCEEEEEE---CC--eEEEEECCCC--------ceEEEcCCCCccceecCcccccccchhcCCCcceEECC
Confidence 3689999995 66665 33 8999999888 66777654321 12378999
Q ss_pred CCcEEEEEEeccCCceeeEEEEEeecCCCC-----cccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC---CC--
Q 039497 253 DGKRLAVATRRKNRNFRHIEIYDLTLNPNF-----HHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS---PV-- 322 (642)
Q Consensus 253 dG~~l~~~~~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~-- 322 (642)
||++|+|...+.. .+.+|++...... ......+.++|.. +....+++..+.. ..
T Consensus 181 Dg~~la~~~~d~~----~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~------------~~~~~l~v~d~~~~~~~~~~ 244 (740)
T 4a5s_A 181 NGTFLAYAQFNDT----EVPLIEYSFYSDESLQYPKTVRVPYPKAGAV------------NPTVKFFVVNTDSLSSVTNA 244 (740)
T ss_dssp TSSEEEEEEEECT----TCCEEEEEECCSTTCSSCEEEEEECCBTTSC------------CCEEEEEEEETTSCCSSSCC
T ss_pred CCCEEEEEEEccc----CCceEEEEeecCCCCCCCcceeecCCCCcCc------------CCeeEEEEEECCCCCCCCcc
Confidence 9999999876543 3445554221111 0111122222211 1112334444433 21
Q ss_pred ceeEEee--------eCCCccEEcCCCCEEEEEecC-CCceeEEEEECCCCC-------eeEEee---cCC-----ceee
Q 039497 323 KELRMLR--------LNGSFPSFSPDGGLIVFNHDF-ELNAGIKIAKSDGSK-------RWTLIK---DRT-----AFYN 378 (642)
Q Consensus 323 ~~~~~~~--------~~~~~~~~spdg~~l~~~~~~-~~~~~l~~~d~~~~~-------~~~l~~---~~~-----~~~~ 378 (642)
...++.. .....+.|||||+.+++...+ .....|+++|+++++ ...+.. ... ...+
T Consensus 245 ~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p 324 (740)
T 4a5s_A 245 TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEP 324 (740)
T ss_dssp CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCC
T ss_pred eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCc
Confidence 1111111 011356899999987776543 445689999999887 333322 222 3478
Q ss_pred eeecCCCEEE-EEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCC-
Q 039497 379 SWSPTEKHVI-YTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR- 456 (642)
Q Consensus 379 ~~spdg~~l~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~- 456 (642)
.|||||+.|+ +.+. .++..+||.++. + ++ ..++|+.+. ..+..+ +++||++|+|.+.+
T Consensus 325 ~fspDG~~l~~~~s~------~~G~~~l~~~~~--~-----~~-----~~~~lT~g~-~~v~~~-~~~d~~~i~f~~~~~ 384 (740)
T 4a5s_A 325 HFTLDGNSFYKIISN------EEGYRHICYFQI--D-----KK-----DCTFITKGT-WEVIGI-EALTSDYLYYISNEY 384 (740)
T ss_dssp EECTTSSEEEEEEEC------TTSCEEEEEEET--T-----CS-----SCEESCCSS-SCEEEE-EEECSSEEEEEESCG
T ss_pred eEcCCCCEEEEEEEc------CCCceEEEEEEC--C-----CC-----ceEecccCC-EEEEEE-EEEeCCEEEEEEecC
Confidence 9999999998 6663 355677888877 4 34 678888765 444433 44779999999987
Q ss_pred ---CCceeEEEEECCCCccccceeeCCCC----CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEee
Q 039497 457 ---SGHKNLFVLDAVNGEFNGDIRQLTDG----PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH 529 (642)
Q Consensus 457 ---~g~~~l~~~d~~~g~~~~~~~~l~~~----~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 529 (642)
.+..+||.+++++++. .+.|+.. ......+.|||||+++++..... ....+++++.++++...++
T Consensus 385 ~~~~~~~~ly~v~~~g~~~---~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~-----~~p~~~l~~~~~~~~~~~l 456 (740)
T 4a5s_A 385 KGMPGGRNLYKIQLIDYTK---VTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGP-----GLPLYTLHSSVNDKGLRVL 456 (740)
T ss_dssp GGCTTCBEEEEEETTEEEE---EEESSTTTSTTTBCBEEEEECTTSSEEEEEECSB-----SSCEEEEEETTTTEEEEEE
T ss_pred CCCCceeEEEEEECCCCCc---ceeeccccCCCCCceEEEEECCCCCEEEEEeCCC-----CCCEEEEEECCCCcEEEEe
Confidence 4567999999986653 2367643 23467789999999998887764 3457899999877765555
Q ss_pred e
Q 039497 530 V 530 (642)
Q Consensus 530 ~ 530 (642)
.
T Consensus 457 ~ 457 (740)
T 4a5s_A 457 E 457 (740)
T ss_dssp E
T ss_pred c
Confidence 3
No 20
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=5.1e-23 Score=214.81 Aligned_cols=316 Identities=18% Similarity=0.234 Sum_probs=219.3
Q ss_pred CCceeCCCCcEEE-EEecC--CCCCCCCCCCCeeeEEEEEe--cCCCce---eEeecCCC--cceEee------------
Q 039497 143 YSPSVSYSGKFIA-VASYE--SRPWPGEFHELNTDIVVFQE--SDPNKR---VIVCERGG--WPTWSG------------ 200 (642)
Q Consensus 143 ~~~~~SPDG~~la-~~~~~--~~~~~~~~~~~~~~l~~~~~--~~g~~~---~l~~~~~~--~~~wsp------------ 200 (642)
..+.|+++|..++ ..+-. . .......|.+|++ .+++.. .+...... ..++++
T Consensus 66 ~~~~w~~~g~~~~~~g~~~~~~------~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~ 139 (415)
T 2hqs_A 66 QPAAWSALGIDAVVVGQVTPNP------DGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK 139 (415)
T ss_dssp CHHHHHTTTCCEEEEEEEEECT------TSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred CHHHHHhcCCCEEEEEEEEECC------CCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCC
Confidence 4578999997655 33211 1 0001236899999 887733 12211111 123332
Q ss_pred ---CCeEEEEEecCCCc--eEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEE
Q 039497 201 ---DSTIYFHRQADDGW--WSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD 275 (642)
Q Consensus 201 ---dg~~~~~~~~~~g~--~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d 275 (642)
+++++++.....+. ..|+.++.+++ ....+..+...+..++|||||++|+++..+.+ ...|++||
T Consensus 140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~--------~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~--~~~i~~~d 209 (415)
T 2hqs_A 140 GAFRTRIAYVVQTNGGQFPYELRVSDYDGY--------NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESG--RSALVIQT 209 (415)
T ss_dssp CCTTCEEEEEEECSSSSCCEEEEEEETTSC--------SCEEEEEESSCEEEEEECTTSSEEEEEECTTS--SCEEEEEE
T ss_pred CcCCCEEEEEEecCCCCccceEEEEcCCCC--------CCEEEeCCCCcceeeEEcCCCCEEEEEEecCC--CcEEEEEE
Confidence 44777777432221 68999998876 66777766667888999999999999775432 34788888
Q ss_pred eecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCcee
Q 039497 276 LTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG 355 (642)
Q Consensus 276 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 355 (642)
+... +...+. .. ......++|||||++|+|....++...
T Consensus 210 ~~tg--------------~~~~l~-----------------~~----------~~~~~~~~~spdg~~la~~~~~~g~~~ 248 (415)
T 2hqs_A 210 LANG--------------AVRQVA-----------------SF----------PRHNGAPAFSPDGSKLAFALSKTGSLN 248 (415)
T ss_dssp TTTC--------------CEEEEE-----------------CC----------SSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred CCCC--------------cEEEee-----------------cC----------CCcccCEEEcCCCCEEEEEEecCCCce
Confidence 7321 111100 00 001125689999999999876666788
Q ss_pred EEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC
Q 039497 356 IKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE 434 (642)
Q Consensus 356 l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 434 (642)
||++|+.+++...+.. ...+..+.|+|||++|++.+.. ++...||.++. + ++ ....++...
T Consensus 249 i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~------~g~~~i~~~d~--~-----~~-----~~~~l~~~~ 310 (415)
T 2hqs_A 249 LYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQ------AGRPQVYKVNI--N-----GG-----APQRITWEG 310 (415)
T ss_dssp EEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECT------TSSCEEEEEET--T-----SS-----CCEECCCSS
T ss_pred EEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECC------CCCcEEEEEEC--C-----CC-----CEEEEecCC
Confidence 9999999988766655 4567889999999999999842 44556776665 3 23 455665554
Q ss_pred CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCcee
Q 039497 435 TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFS 514 (642)
Q Consensus 435 ~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~ 514 (642)
..+..+.|||||++|++.+..++...|++||+.+++. +.++... .+..++|+|||+.|++.+.+. +...
T Consensus 311 -~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~----~~l~~~~-~~~~~~~spdg~~l~~~s~~~-----~~~~ 379 (415)
T 2hqs_A 311 -SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV----QVLSSTF-LDETPSLAPNGTMVIYSSSQG-----MGSV 379 (415)
T ss_dssp -SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE----EECCCSS-SCEEEEECTTSSEEEEEEEET-----TEEE
T ss_pred -CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE----EEecCCC-CcCCeEEcCCCCEEEEEEcCC-----CccE
Confidence 5667799999999999998776778999999998884 7777654 678899999999999998765 3567
Q ss_pred EEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCC
Q 039497 515 LYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADG 553 (642)
Q Consensus 515 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg 553 (642)
||++|++++..+.++. ..+ .+..++|||--
T Consensus 380 l~~~d~~g~~~~~l~~--~~~-------~v~~~~~~~~~ 409 (415)
T 2hqs_A 380 LNLVSTDGRFKARLPA--TDG-------QVKFPAWSPYL 409 (415)
T ss_dssp EEEEETTSCCEEECCC--SSS-------EEEEEEECCCC
T ss_pred EEEEECCCCcEEEeeC--CCC-------CCcCCcccccc
Confidence 9999999888877764 334 67899999854
No 21
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.91 E-value=1.5e-22 Score=230.69 Aligned_cols=426 Identities=13% Similarity=0.038 Sum_probs=269.5
Q ss_pred CceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCccccccccCCCEEEEEEeccCCC
Q 039497 34 FHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPD 113 (642)
Q Consensus 34 ~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 113 (642)
...+.|+.|.+.....+|| |||++||..+ .+|...||.+.. +
T Consensus 4 ~~~~~~~~h~~~v~~i~~s-p~~~~la~~~-~~g~v~iwd~~~-~----------------------------------- 45 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFH-PTEPWVLTTL-YSGRVEIWNYET-Q----------------------------------- 45 (814)
T ss_dssp CCEEEEEEECSCEEEEEEC-SSSSEEEEEE-TTSEEEEEETTT-T-----------------------------------
T ss_pred ccceeeecCCCceEEEEEC-CCCCEEEEEe-CCCEEEEEECCC-C-----------------------------------
Confidence 3457788999999999999 9999999654 467776776411 0
Q ss_pred cccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC
Q 039497 114 QIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG 193 (642)
Q Consensus 114 ~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~ 193 (642)
.....+..+......++|||||++||+...++ .|.+|++.+++.......+.
T Consensus 46 ----------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg------------~i~vw~~~~~~~~~~~~~~~ 97 (814)
T 3mkq_A 46 ----------------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDF------------RIRVFNYNTGEKVVDFEAHP 97 (814)
T ss_dssp ----------------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTS------------EEEEEETTTCCEEEEEECCS
T ss_pred ----------------ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCC------------eEEEEECCCCcEEEEEecCC
Confidence 01112222333445689999999999988665 79999999888655544333
Q ss_pred C---cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeec-CCcEEEEEEeccCCcee
Q 039497 194 G---WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFH-DGKRLAVATRRKNRNFR 269 (642)
Q Consensus 194 ~---~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp-dG~~l~~~~~~~~~~~~ 269 (642)
. .++|+||+..+++. ..+|...+|.++.... ....+..+...+..++|+| +|+.|++...++
T Consensus 98 ~~v~~~~~s~~~~~l~~~-~~dg~i~vw~~~~~~~--------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg----- 163 (814)
T 3mkq_A 98 DYIRSIAVHPTKPYVLSG-SDDLTVKLWNWENNWA--------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR----- 163 (814)
T ss_dssp SCEEEEEECSSSSEEEEE-ETTSEEEEEEGGGTSE--------EEEEEECCSSCEEEEEEETTEEEEEEEEETTS-----
T ss_pred CCEEEEEEeCCCCEEEEE-cCCCEEEEEECCCCce--------EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC-----
Confidence 2 45999999877776 4577556665443222 3455566666788899999 888888865444
Q ss_pred eEEEEEeec---------CCCCcccCCeecC--CCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeee---CCCcc
Q 039497 270 HIEIYDLTL---------NPNFHHYNPFVSA--NSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRL---NGSFP 335 (642)
Q Consensus 270 ~i~~~d~~~---------~~~~~~~~~~~sp--Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 335 (642)
.+.+||+.. .....+....|+| ++..|+....++. .. +..+.... .+..... ....+
T Consensus 164 ~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~------i~--~~d~~~~~-~~~~~~~~~~~v~~~ 234 (814)
T 3mkq_A 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT------IK--IWDYQTKS-CVATLEGHMSNVSFA 234 (814)
T ss_dssp EEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSE------EE--EEETTTTE-EEEEEECCSSCEEEE
T ss_pred eEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE------EE--EEECCCCc-EEEEEcCCCCCEEEE
Confidence 899999821 2224566778998 8988887643332 22 22322221 1111111 12456
Q ss_pred EEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEE--EEEEcCCCcccCCCeEEEEEEEee
Q 039497 336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHV--IYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 336 ~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l--~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
.|+|+|+.|+.... ...|.++++.+++...... ...+..+.|+|+|+.+ +... +..+.+|.+..
T Consensus 235 ~~~~~~~~l~~~~~---dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~- 302 (814)
T 3mkq_A 235 VFHPTLPIIISGSE---DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF--------DNGFTVLSLGN- 302 (814)
T ss_dssp EECSSSSEEEEEET---TSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE--------TTEEEEEECSC-
T ss_pred EEcCCCCEEEEEeC---CCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe--------CCCEEEEEcCC-
Confidence 89999998887654 3678888998877555443 5678899999999854 3333 34444444321
Q ss_pred cCCC---CCCCC-----------------------------CccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCc
Q 039497 412 LDPS---DDNNR-----------------------------EEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGH 459 (642)
Q Consensus 412 ~~~~---~~~~~-----------------------------~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~ 459 (642)
... ..+.+ .........+.... ..+..++|||||++|++.+.
T Consensus 303 -~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~la~~~~---- 376 (814)
T 3mkq_A 303 -DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVD-VFPQSLAHSPNGRFVTVVGD---- 376 (814)
T ss_dssp -CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCS-SCCSEEEECTTSSEEEEEET----
T ss_pred -CCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCc-cCCceeEECCCCCEEEEecC----
Confidence 000 00000 00000111112222 34567899999999998873
Q ss_pred eeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCc
Q 039497 460 KNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV 539 (642)
Q Consensus 460 ~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 539 (642)
..+++|++..... .. ...+..++|||||++|++...++. |.+|+.- . +...
T Consensus 377 ~~~~i~~~~~~~~----~~----~~~i~~~~~spdg~~la~~~~~g~--------v~l~~~~-------~--~~~~---- 427 (814)
T 3mkq_A 377 GEYVIYTALAWRN----KA----FGKCQDFVWGPDSNSYALIDETGQ--------IKYYKNF-------K--EVTS---- 427 (814)
T ss_dssp TEEEEEETTTTEE----EE----EEECSEEEECTTSSCEEEECTTCC--------EEEEETT-------E--ECTT----
T ss_pred CEEEEEECccccc----cC----CCceEEEEEeCCCCeEEEEeCCCc--------EEEEECC-------C--Cccc----
Confidence 3688888764332 21 134567899999999988876653 7777421 1 1112
Q ss_pred ccccccceEEcCCC---CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEe
Q 039497 540 DRERINHVCFSADG---EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLG 616 (642)
Q Consensus 540 ~~~~~~~~~~S~Dg---~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~ 616 (642)
.+..+.||||| +.|++...++ .|++||+..+++......... .+.|||||++++.
T Consensus 428 ---~v~~~~~s~dg~~~~~l~~~~~d~-----------------~v~~~d~~~~~~~~~~~~~~~--~v~~s~dg~~la~ 485 (814)
T 3mkq_A 428 ---WSVPMHSAIDRLFSGALLGVKSDG-----------------FVYFFDWDNGTLVRRIDVNAK--DVIWSDNGELVMI 485 (814)
T ss_dssp ---CCCCCSSCCCEEECSSSEEEEETT-----------------EEEEECTTTCCEEEEESSCEE--EEEECTTSSEEEE
T ss_pred ---eEEcCCcCccceecceEEEEecCC-----------------EEEEEECCcCcEEEEEecCCC--EEEEcCCCCEEEE
Confidence 34678899998 5677766553 799999887765433332222 8899999999876
Q ss_pred e
Q 039497 617 K 617 (642)
Q Consensus 617 ~ 617 (642)
.
T Consensus 486 ~ 486 (814)
T 3mkq_A 486 V 486 (814)
T ss_dssp E
T ss_pred E
Confidence 6
No 22
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.91 E-value=1.7e-22 Score=226.89 Aligned_cols=360 Identities=13% Similarity=0.104 Sum_probs=226.1
Q ss_pred CCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecC------CCcceEeeCCeEEEEEecCC----
Q 039497 143 YSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCER------GGWPTWSGDSTIYFHRQADD---- 212 (642)
Q Consensus 143 ~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~------~~~~~wspdg~~~~~~~~~~---- 212 (642)
..++|||||++++ ...+. .|++|++.+++.++++... ...++|||||+.++......
T Consensus 19 ~~~~~s~dg~~~~-~~~d~------------~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~ 85 (719)
T 1z68_A 19 FFPNWISGQEYLH-QSADN------------NIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWR 85 (719)
T ss_dssp CCCEESSSSEEEE-ECTTS------------CEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSS
T ss_pred CccEECCCCeEEE-EcCCC------------CEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEE
Confidence 4689999996544 43322 7999999999988887643 34679999996544432211
Q ss_pred --CceEEEEEecCCCcccccCCccc---eeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCC------C
Q 039497 213 --GWWSIFRVSFPENLEFLGFPIAP---TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNP------N 281 (642)
Q Consensus 213 --g~~~l~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~------~ 281 (642)
+...|+.+++.++ +. .++. ..+..++|||||++|+|+.. ..|++|++..+. .
T Consensus 86 ~s~~~~i~~~d~~~g--------~~~~~~~l~---~~~~~~~~SPDG~~la~~~~------~~i~~~~~~~g~~~~l~~~ 148 (719)
T 1z68_A 86 YSYTATYYIYDLSNG--------EFVRGNELP---RPIQYLCWSPVGSKLAYVYQ------NNIYLKQRPGDPPFQITFN 148 (719)
T ss_dssp SCEEEEEEEEETTTT--------EECCSSCCC---SSBCCEEECSSTTCEEEEET------TEEEEESSTTSCCEECCCC
T ss_pred eecceEEEEEECCCC--------ccccceecC---cccccceECCCCCEEEEEEC------CeEEEEeCCCCCcEEEecC
Confidence 1248999999888 33 3332 24677999999999999742 279999983211 1
Q ss_pred C--------------------cccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCC
Q 039497 282 F--------------------HHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDG 341 (642)
Q Consensus 282 ~--------------------~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 341 (642)
. ....+.|||||++|+|.+.+.... ....+......... .. ....+...|
T Consensus 149 ~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~----~~~~~~~~~~~~~~-~~-----~~~~yp~~g 218 (719)
T 1z68_A 149 GRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDI----PVIAYSYYGDEQYP-RT-----INIPYPKAG 218 (719)
T ss_dssp CBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTS----CEEEEEECCSSSSC-EE-----EEEECCBTT
T ss_pred CCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCC----ceEEeeccCCCCCc-cc-----eeecCCCCC
Confidence 1 114789999999999987654321 11111111110000 00 011222223
Q ss_pred CEEEEEecCCCceeEEEEECCCCCee---EEee-------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEE--
Q 039497 342 GLIVFNHDFELNAGIKIAKSDGSKRW---TLIK-------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVS-- 409 (642)
Q Consensus 342 ~~l~~~~~~~~~~~l~~~d~~~~~~~---~l~~-------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~-- 409 (642)
. ......|+++|+++++.. ++.. ...+..+.||||++.++.... .......|+.++
T Consensus 219 ~-------~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~-----~~~~~~~l~~~d~~ 286 (719)
T 1z68_A 219 A-------KNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLK-----RVQNVSVLSICDFR 286 (719)
T ss_dssp S-------CCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEE-----SSTTEEEEEEEEEC
T ss_pred C-------CCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEec-----cccCeEEEEEEccc
Confidence 2 133468999999987642 3321 234678999999764444332 123445566665
Q ss_pred --eecCCCCCCCCCccccceEEcc----ccCCCCcc-----CcEECCCCCeEEE-EeCCCCceeEEEEECCCCcccccee
Q 039497 410 --FQLDPSDDNNREEIPCDVKILT----KEETGNNA-----FPSCSPDGKFLVF-RSGRSGHKNLFVLDAVNGEFNGDIR 477 (642)
Q Consensus 410 --~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~-----~~~~SpDg~~l~~-~~~~~g~~~l~~~d~~~g~~~~~~~ 477 (642)
. . ++ ....+. ......+. .+.|||||+.|++ .+.+++..+||++++.+++. +
T Consensus 287 ~~~--~-----~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~----~ 350 (719)
T 1z68_A 287 EDW--Q-----TW-----DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA----I 350 (719)
T ss_dssp SSS--S-----SE-----ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC----E
T ss_pred CCC--C-----CC-----ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce----E
Confidence 4 2 22 233333 12213344 7899999999888 45667888999999988774 8
Q ss_pred eCCCCCCcccceeEecCCCEEEEEecC--CCCCCCCceeEEEEeCCCC--ceEEeeecC--CCCCCCcccccccceEEcC
Q 039497 478 QLTDGPWIDTMPSWSPKGDLIAFSSNR--HNPDNVEAFSLYVIKPDGS--GLRRIHVAG--PEGSGDVDRERINHVCFSA 551 (642)
Q Consensus 478 ~l~~~~~~~~~~~~spdG~~l~~~~~~--~~~~~~~~~~l~~~d~~~~--~~~~l~~~~--~~~~~~~~~~~~~~~~~S~ 551 (642)
.|+.....+..+.++ ||+.|+|.+.. .. ....+||.++++++ +.+.++..- ... .+..+.|||
T Consensus 351 ~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~---~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~-------~~~~~~~s~ 419 (719)
T 1z68_A 351 QITSGKWEAINIFRV-TQDSLFYSSNEFEEY---PGRRNIYRISIGSYPPSKKCVTCHLRKERC-------QYYTASFSD 419 (719)
T ss_dssp ECSCSSSCEEEEEEE-CSSEEEEEESCGGGC---TTCBEEEEEECSSSSCCEEESSTTTTTTTB-------CBEEEEECG
T ss_pred ecccCceEEEEEEEE-eCCEEEEEEecCCCC---CceEEEEEEeCCCCCCCceeccCccCCCCC-------ceEEEEECC
Confidence 888776666777777 99999999876 21 15678999998766 345554310 111 345789999
Q ss_pred CCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeec
Q 039497 552 DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL 595 (642)
Q Consensus 552 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 595 (642)
||++|++....... ..++++++.+++..++
T Consensus 420 dg~~l~~~~s~~~~--------------p~~~l~d~~~g~~~~~ 449 (719)
T 1z68_A 420 YAKYYALVCYGPGI--------------PISTLHDGRTDQEIKI 449 (719)
T ss_dssp GGSSEEEEECCBSS--------------CEEEEECSSSCCEEEE
T ss_pred CCCEEEEEcCCCCC--------------CeEEEEECCCCCEEEE
Confidence 99999987654332 2678888876664433
No 23
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=5.1e-21 Score=214.51 Aligned_cols=355 Identities=16% Similarity=0.189 Sum_probs=227.8
Q ss_pred CCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCc--eeEeecC-------------------CCcceEeeC
Q 039497 143 YSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNK--RVIVCER-------------------GGWPTWSGD 201 (642)
Q Consensus 143 ~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~l~~~~-------------------~~~~~wspd 201 (642)
..++|+ |+.+++... . + | +|++.+|+. +.+.... -..++||||
T Consensus 29 ~~~~w~--g~~~~~~~~-~----------~--i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd 92 (706)
T 2z3z_A 29 VGLQWM--GDNYVFIEG-D----------D--L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR 92 (706)
T ss_dssp TTCEEE--TTEEEEEET-T----------E--E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT
T ss_pred CCCcCc--CCeEEEEeC-C----------c--E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC
Confidence 447899 666666542 2 2 7 999999988 6665532 124589999
Q ss_pred CeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeec---
Q 039497 202 STIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL--- 278 (642)
Q Consensus 202 g~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~--- 278 (642)
+.+++.. ++ .|+.+++.++ +..++......+..++|||||++|+++. . ..|++||+..
T Consensus 93 ~~~~~~~---~~--~i~~~d~~~~--------~~~~l~~~~~~~~~~~~SpdG~~la~~~-~-----~~i~v~~~~~~~~ 153 (706)
T 2z3z_A 93 GLVVLFT---QG--GLVGFDMLAR--------KVTYLFDTNEETASLDFSPVGDRVAYVR-N-----HNLYIARGGKLGE 153 (706)
T ss_dssp TEEEEEE---TT--EEEEEETTTT--------EEEEEECCTTCCTTCEECTTSSEEEEEE-T-----TEEEEEECBCTTS
T ss_pred CeEEEEE---CC--EEEEEECCCC--------ceEEccCCcccccCCcCCCCCCEEEEEE-C-----CeEEEEecCcccc
Confidence 6677665 24 8888998887 5566666655678899999999999953 2 3799999865
Q ss_pred --CCC------C-c---------------ccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCc
Q 039497 279 --NPN------F-H---------------HYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSF 334 (642)
Q Consensus 279 --~~~------~-~---------------~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (642)
... . . ...+.|||||++|++...+.... ....+.............
T Consensus 154 ~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~----~~~~~~~~~~~~~~~~~~------ 223 (706)
T 2z3z_A 154 GMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMV----KPTPIVDYHPLEAESKPL------ 223 (706)
T ss_dssp CCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTS----CCEEEEECCSSSCEEEEE------
T ss_pred cCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCC----ceEEeeccCCCCCceEEe------
Confidence 321 1 1 25678999999999987654421 111121111111111100
Q ss_pred cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
.+...| .......|+++|+++++...+.. ...+..+.|||||++|++.... .......|+.++.
T Consensus 224 -~y~~~g-------~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~----~~~~~~~v~~~d~ 291 (706)
T 2z3z_A 224 -YYPMAG-------TPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVN----RAQNECKVNAYDA 291 (706)
T ss_dssp -CCCBTT-------SCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEEC----TTSCEEEEEEEET
T ss_pred -eCCCCC-------CCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeC----CCCCeeEEEEEEC
Confidence 111111 11345789999999988666653 2346789999999999997642 1223345555544
Q ss_pred ecCCCCCCCCCccccceEEcccc-CCC---CccCcEECC--CCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC
Q 039497 411 QLDPSDDNNREEIPCDVKILTKE-ETG---NNAFPSCSP--DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW 484 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~-~~~---~~~~~~~Sp--Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~ 484 (642)
. ++. ..+.+... ... ....+.||| ||++| +.+.+++..+||.++..++. ++.|+.+..
T Consensus 292 --~-----~g~----~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l-~~~~~~g~~~l~~~~~~~~~----~~~l~~~~~ 355 (706)
T 2z3z_A 292 --E-----TGR----FVRTLFVETDKHYVEPLHPLTFLPGSNNQFI-WQSRRDGWNHLYLYDTTGRL----IRQVTKGEW 355 (706)
T ss_dssp --T-----TCC----EEEEEEEEECSSCCCCCSCCEECTTCSSEEE-EEECTTSSCEEEEEETTSCE----EEECCCSSS
T ss_pred --C-----CCc----eeeEEEEccCCCeECccCCceeecCCCCEEE-EEEccCCccEEEEEECCCCE----EEecCCCCe
Confidence 2 221 22223211 101 125689999 99854 56666777899999976555 588887766
Q ss_pred cccc-eeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 485 IDTM-PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 485 ~~~~-~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
.+.. +.|||||++|++.+....+ ....||++|+++++.+.++.. . .+..+.|||||++|++.....
T Consensus 356 ~v~~~~~~spdg~~l~~~~~~~~~---~~~~l~~~d~~~~~~~~l~~~---~-------~~~~~~~spdg~~l~~~~~~~ 422 (706)
T 2z3z_A 356 EVTNFAGFDPKGTRLYFESTEASP---LERHFYCIDIKGGKTKDLTPE---S-------GMHRTQLSPDGSAIIDIFQSP 422 (706)
T ss_dssp CEEEEEEECTTSSEEEEEESSSCT---TCBEEEEEETTCCCCEESCCS---S-------SEEEEEECTTSSEEEEEEECS
T ss_pred EEEeeeEEcCCCCEEEEEecCCCC---ceEEEEEEEcCCCCceeccCC---C-------ceEEEEECCCCCEEEEEecCC
Confidence 6655 7999999999999876421 356899999998887777632 2 356799999999999886654
Q ss_pred CcccCCCCCCCCCCCCCcEEEEEcCCCceeecc
Q 039497 564 AVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596 (642)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt 596 (642)
.. ...||++++++++.+.++
T Consensus 423 ~~-------------p~~i~l~d~~~~~~~~~~ 442 (706)
T 2z3z_A 423 TV-------------PRKVTVTNIGKGSHTLLE 442 (706)
T ss_dssp SC-------------SCEEEEEESSSCEEEEEE
T ss_pred CC-------------CcEEEEEECCCCeEeecc
Confidence 32 237999999887744444
No 24
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.90 E-value=2.2e-20 Score=205.50 Aligned_cols=430 Identities=11% Similarity=0.025 Sum_probs=275.0
Q ss_pred eeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCc-cccccc
Q 039497 19 FDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSL-FHDRPV 97 (642)
Q Consensus 19 ~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~-~~~~~~ 97 (642)
+.|++.+ .+ .....+..|........|+ |+|+.++++...+|...+|.... ++....+....... .-....
T Consensus 142 ~~v~~~d-~~-----~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~v~~~~ 213 (615)
T 1pgu_A 142 GVFISWD-SG-----NSLGEVSGHSQRINACHLK-QSRPMRSMTVGDDGSVVFYQGPP-FKFSASDRTHHKQGSFVRDVE 213 (615)
T ss_dssp EEEEETT-TC-----CEEEECCSCSSCEEEEEEC-SSSSCEEEEEETTTEEEEEETTT-BEEEEEECSSSCTTCCEEEEE
T ss_pred cEEEEEE-CC-----CcceeeecCCccEEEEEEC-CCCCcEEEEEeCCCcEEEEeCCC-cceeeeecccCCCCceEEEEE
Confidence 6788887 44 6678888999999999999 99985555666788888887522 21111121111100 001122
Q ss_pred c--C-CCEEEEEEeccCCCcccccccceEEEEccCCceEecc-----cCCCccCCceeCCCCcEEEEEecCCCCCCCCCC
Q 039497 98 A--R-NNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLT-----PYGVVDYSPSVSYSGKFIAVASYESRPWPGEFH 169 (642)
Q Consensus 98 ~--~-~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt-----~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~ 169 (642)
+ + ++.++... .+ +.|.++++.+++..... .+........|+ ||++|+....+.
T Consensus 214 ~~~~~~~~l~~~~-~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~-------- 274 (615)
T 1pgu_A 214 FSPDSGEFVITVG-SD---------RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA-------- 274 (615)
T ss_dssp ECSTTCCEEEEEE-TT---------CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS--------
T ss_pred ECCCCCCEEEEEe-CC---------CeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCC--------
Confidence 2 4 44444433 32 25777788877765433 444555678899 999999887655
Q ss_pred CCeeeEEEEEecCCCceeEeecCC-----C--cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCC
Q 039497 170 ELNTDIVVFQESDPNKRVIVCERG-----G--WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPG 242 (642)
Q Consensus 170 ~~~~~l~~~~~~~g~~~~l~~~~~-----~--~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 242 (642)
.|.+|++.+++......... . ...|+ ++..+++. ..+|. |..++..++. ....+..+.
T Consensus 275 ----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~-~~~g~--i~~~d~~~~~-------~~~~~~~~~ 339 (615)
T 1pgu_A 275 ----TIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISL-SLDGT--LNFYELGHDE-------VLKTISGHN 339 (615)
T ss_dssp ----EEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEE-ETTSC--EEEEETTEEE-------EEEEECCCS
T ss_pred ----cEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEE-ECCCC--EEEEECCCCc-------EEEEEeCCC
Confidence 79999999877555444321 1 23565 66666666 45674 4555555542 445566666
Q ss_pred CccccceeecCCcEEEEEEeccCCceeeEEEEEee---cCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeecc
Q 039497 243 VHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT---LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVA 319 (642)
Q Consensus 243 ~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~---~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~ 319 (642)
..+..++| |+ |+....++ .+.+|++. ..+...+....| +++..|+....++. ..+|-....
T Consensus 340 ~~v~~~~~-~~---l~~~~~dg-----~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~------i~~~~~~~~ 403 (615)
T 1pgu_A 340 KGITALTV-NP---LISGSYDG-----RIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDT------LKVNGITKH 403 (615)
T ss_dssp SCEEEEET-TT---TEEEETTS-----CEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTE------EEETTEEEE
T ss_pred CCEEEEEe-cC---cEEECCCC-----eEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCC------EEEEEcccC
Confidence 67778888 87 55544333 77787753 334444555666 55666665543332 122211100
Q ss_pred CCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCccc
Q 039497 320 SPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQS 398 (642)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~ 398 (642)
.... ......++|+|+.++.. ....+.++++..++...... ...+..+.|+ ++.|+....
T Consensus 404 ~~~~-------~~~~~~~s~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~------ 464 (615)
T 1pgu_A 404 EFGS-------QPKVASANNDGFTAVLT----NDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLE------ 464 (615)
T ss_dssp ECSS-------CEEEEEECSSSEEEEEE----TTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEET------
T ss_pred cccC-------CceEEEEcCCCCEEEEe----CCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeec------
Confidence 0000 12345889999866664 34678888987666544433 6677888888 888887762
Q ss_pred CCCeEEEEEEEeecCCCCCCCCCccccce--EEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccce
Q 039497 399 ERATVQIARVSFQLDPSDDNNREEIPCDV--KILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI 476 (642)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~ 476 (642)
.++.+++|++.. + .. ..+..+. ..+..+.|||||++|+..+.+ ..|.+|++.+++. +
T Consensus 465 ~d~~i~~~~~~~---------~-----~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~d---g~i~iw~~~~~~~---~ 523 (615)
T 1pgu_A 465 EGNTIQVFKLSD---------L-----EVSFDLKTPLR-AKPSYISISPSETYIAAGDVM---GKILLYDLQSREV---K 523 (615)
T ss_dssp TTSCEEEEETTE---------E-----EEEEECSSCCS-SCEEEEEECTTSSEEEEEETT---SCEEEEETTTTEE---E
T ss_pred CCCeEEEEECCC---------c-----cccccccCCcc-CceEEEEECCCCCEEEEcCCC---CeEEEeeCCCCcc---e
Confidence 157889998854 1 22 3334444 677889999999999888743 4799999998886 5
Q ss_pred eeCCC-CCCcccceeEec----------CCCEEEEEecCCCCCCCCceeEEEEeCCCC-ceEEeeecCCCCCCCcccccc
Q 039497 477 RQLTD-GPWIDTMPSWSP----------KGDLIAFSSNRHNPDNVEAFSLYVIKPDGS-GLRRIHVAGPEGSGDVDRERI 544 (642)
Q Consensus 477 ~~l~~-~~~~~~~~~~sp----------dG~~l~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~ 544 (642)
..+.. +...+..++|+| ||++|+..+.++. |++||+.++ +..... ..+.. .+
T Consensus 524 ~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~--------i~iw~~~~~~~~~~~~-~~h~~-------~v 587 (615)
T 1pgu_A 524 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN--------IFIYSVKRPMKIIKAL-NAHKD-------GV 587 (615)
T ss_dssp ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC--------EEEEESSCTTCCEEET-TSSTT-------CE
T ss_pred eEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCc--------EEEEECCCCceechhh-hcCcc-------ce
Confidence 55655 667788899999 9999999887765 999999886 333222 23444 67
Q ss_pred cceEEcCCCCEEEEEEecC
Q 039497 545 NHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 545 ~~~~~S~Dg~~l~~~~~~~ 563 (642)
..+.|+|||+ |+..+.++
T Consensus 588 ~~l~~s~~~~-l~s~~~d~ 605 (615)
T 1pgu_A 588 NNLLWETPST-LVSSGADA 605 (615)
T ss_dssp EEEEEEETTE-EEEEETTS
T ss_pred EEEEEcCCCC-eEEecCCc
Confidence 8999999999 77766554
No 25
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.89 E-value=5.8e-21 Score=217.66 Aligned_cols=421 Identities=10% Similarity=0.006 Sum_probs=265.4
Q ss_pred eeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCccccccc
Q 039497 18 GFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPV 97 (642)
Q Consensus 18 ~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~ 97 (642)
.|.|.+.+... +....+++.|.+.+....|| |||++||..+. +|...||.+..+. ....+....... ....
T Consensus 34 ~g~v~iwd~~~----~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~-dg~i~vw~~~~~~-~~~~~~~~~~~v--~~~~ 104 (814)
T 3mkq_A 34 SGRVEIWNYET----QVEVRSIQVTETPVRAGKFI-ARKNWIIVGSD-DFRIRVFNYNTGE-KVVDFEAHPDYI--RSIA 104 (814)
T ss_dssp TSEEEEEETTT----TEEEEEEECCSSCEEEEEEE-GGGTEEEEEET-TSEEEEEETTTCC-EEEEEECCSSCE--EEEE
T ss_pred CCEEEEEECCC----CceEEEEecCCCcEEEEEEe-CCCCEEEEEeC-CCeEEEEECCCCc-EEEEEecCCCCE--EEEE
Confidence 56677777654 14567888999999999999 99999996654 7888888874332 111111111111 1122
Q ss_pred c--CCCEEEEEEeccCCCcccccccceEEEEccCC-c-eEecccCCCccCCceeCC-CCcEEEEEecCCCCCCCCCCCCe
Q 039497 98 A--RNNKLFFISAHEQPDQIFKSWSALYSTDLKAS-K-FTRLTPYGVVDYSPSVSY-SGKFIAVASYESRPWPGEFHELN 172 (642)
Q Consensus 98 ~--~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~-~~~lt~~~~~~~~~~~SP-DG~~la~~~~~~~~~~~~~~~~~ 172 (642)
+ ++..|+..+.. +.|.++++.++ . ...+..+.......+|+| ||+.|++...++
T Consensus 105 ~s~~~~~l~~~~~d----------g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg----------- 163 (814)
T 3mkq_A 105 VHPTKPYVLSGSDD----------LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR----------- 163 (814)
T ss_dssp ECSSSSEEEEEETT----------SEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS-----------
T ss_pred EeCCCCEEEEEcCC----------CEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC-----------
Confidence 3 45555544432 14555577765 3 344555556667789999 899999887665
Q ss_pred eeEEEEEecCCCceeEeec-C-C--CcceEee--CCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccc
Q 039497 173 TDIVVFQESDPNKRVIVCE-R-G--GWPTWSG--DSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCF 246 (642)
Q Consensus 173 ~~l~~~~~~~g~~~~l~~~-~-~--~~~~wsp--dg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 246 (642)
.|.+|++.++........ . . ..+.|+| ++.++++. ..+| .|..++..++. ....+..+...+.
T Consensus 164 -~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg--~i~~~d~~~~~-------~~~~~~~~~~~v~ 232 (814)
T 3mkq_A 164 -TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA-SDDL--TIKIWDYQTKS-------CVATLEGHMSNVS 232 (814)
T ss_dssp -EEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEE-CTTS--EEEEEETTTTE-------EEEEEECCSSCEE
T ss_pred -eEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEE-eCCC--EEEEEECCCCc-------EEEEEcCCCCCEE
Confidence 799999988775544432 2 2 3569998 88888877 4567 55566666663 4455555666778
Q ss_pred cceeecCCcEEEEEEeccCCceeeEEEEEeec--------CCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeec
Q 039497 247 TPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL--------NPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPV 318 (642)
Q Consensus 247 ~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~--------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~ 318 (642)
.++|+|+|+.|+....++ .+.+||+.. .+...+..++|+|+|+.+++....... .. +..+
T Consensus 233 ~~~~~~~~~~l~~~~~dg-----~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~ 300 (814)
T 3mkq_A 233 FAVFHPTLPIIISGSEDG-----TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-----FT--VLSL 300 (814)
T ss_dssp EEEECSSSSEEEEEETTS-----CEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTE-----EE--EEEC
T ss_pred EEEEcCCCCEEEEEeCCC-----eEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCC-----EE--EEEc
Confidence 889999999888865444 799999832 233455677899999864333222221 11 1111
Q ss_pred cCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCC------CCe-----eEEee-cCCceeeeeecCCCE
Q 039497 319 ASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG------SKR-----WTLIK-DRTAFYNSWSPTEKH 386 (642)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~------~~~-----~~l~~-~~~~~~~~~spdg~~ 386 (642)
.. ......++|+|+.++..........++...... +.. ..+.. ...+..+.|+|||+.
T Consensus 301 ~~----------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 370 (814)
T 3mkq_A 301 GN----------DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRF 370 (814)
T ss_dssp SC----------CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSE
T ss_pred CC----------CCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCE
Confidence 11 112447899998777654433344555544331 111 11111 335678999999999
Q ss_pred EEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEE
Q 039497 387 VIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLD 466 (642)
Q Consensus 387 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d 466 (642)
|++.. ++.+.+|.+.. . ... . . +.+..++|||||+++++.... + .|.+|+
T Consensus 371 la~~~--------~~~~~i~~~~~---------~-----~~~--~--~-~~i~~~~~spdg~~la~~~~~-g--~v~l~~ 420 (814)
T 3mkq_A 371 VTVVG--------DGEYVIYTALA---------W-----RNK--A--F-GKCQDFVWGPDSNSYALIDET-G--QIKYYK 420 (814)
T ss_dssp EEEEE--------TTEEEEEETTT---------T-----EEE--E--E-EECSEEEECTTSSCEEEECTT-C--CEEEEE
T ss_pred EEEec--------CCEEEEEECcc---------c-----ccc--C--C-CceEEEEEeCCCCeEEEEeCC-C--cEEEEE
Confidence 99887 56788888532 1 111 1 1 345678999999999877632 3 566665
Q ss_pred CCCCccccceeeCCCCCCcccceeEecCC---CEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCccccc
Q 039497 467 AVNGEFNGDIRQLTDGPWIDTMPSWSPKG---DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRER 543 (642)
Q Consensus 467 ~~~g~~~~~~~~l~~~~~~~~~~~~spdG---~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 543 (642)
.-.+. ...+..+.|+||| +.|++.+.++. |++||+.+++....... .
T Consensus 421 ~~~~~-----------~~~v~~~~~s~dg~~~~~l~~~~~d~~--------v~~~d~~~~~~~~~~~~-----------~ 470 (814)
T 3mkq_A 421 NFKEV-----------TSWSVPMHSAIDRLFSGALLGVKSDGF--------VYFFDWDNGTLVRRIDV-----------N 470 (814)
T ss_dssp TTEEC-----------TTCCCCCSSCCCEEECSSSEEEEETTE--------EEEECTTTCCEEEEESS-----------C
T ss_pred CCCCc-----------cceEEcCCcCccceecceEEEEecCCE--------EEEEECCcCcEEEEEec-----------C
Confidence 43222 1234567899998 56777666553 99999988776544321 1
Q ss_pred ccceEEcCCCCEEEEEEe
Q 039497 544 INHVCFSADGEWLLFTAN 561 (642)
Q Consensus 544 ~~~~~~S~Dg~~l~~~~~ 561 (642)
...+.|||||++|++.+.
T Consensus 471 ~~~v~~s~dg~~la~~~~ 488 (814)
T 3mkq_A 471 AKDVIWSDNGELVMIVNT 488 (814)
T ss_dssp EEEEEECTTSSEEEEEEC
T ss_pred CCEEEEcCCCCEEEEEEc
Confidence 237999999999998853
No 26
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=2.4e-20 Score=209.02 Aligned_cols=338 Identities=13% Similarity=0.046 Sum_probs=207.5
Q ss_pred eEEEEccCCce--EecccCC-----------------CccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecC
Q 039497 122 LYSTDLKASKF--TRLTPYG-----------------VVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESD 182 (642)
Q Consensus 122 l~~~~~~~~~~--~~lt~~~-----------------~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (642)
| ++++.+|+. +.|.... .....++|||| ++|++..+ ..|++|++.+
T Consensus 46 i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~~-------------~~i~~~d~~~ 110 (706)
T 2z3z_A 46 L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFTQ-------------GGLVGFDMLA 110 (706)
T ss_dssp E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEET-------------TEEEEEETTT
T ss_pred E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEEC-------------CEEEEEECCC
Confidence 6 778888887 6665432 22456889999 88888754 2799999999
Q ss_pred CCceeEeecCC--CcceEeeCCeEEEEEecCCCceEEEEEecCC-----CcccccCCccceeeCCCCCc-----------
Q 039497 183 PNKRVIVCERG--GWPTWSGDSTIYFHRQADDGWWSIFRVSFPE-----NLEFLGFPIAPTRVTPPGVH----------- 244 (642)
Q Consensus 183 g~~~~l~~~~~--~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~-----~~~~~~~~~~~~~l~~~~~~----------- 244 (642)
++..+++.... ..++|||||+.++... ++ +|+.+++.+ + +..+++..+..
T Consensus 111 ~~~~~l~~~~~~~~~~~~SpdG~~la~~~--~~--~i~v~~~~~~~~~~g--------~~~~~~~~~~~~~~~g~~~~~e 178 (706)
T 2z3z_A 111 RKVTYLFDTNEETASLDFSPVGDRVAYVR--NH--NLYIARGGKLGEGMS--------RAIAVTIDGTETLVYGQAVHQR 178 (706)
T ss_dssp TEEEEEECCTTCCTTCEECTTSSEEEEEE--TT--EEEEEECBCTTSCCC--------CCEESCSCCBTTEEESSCCGGG
T ss_pred CceEEccCCcccccCCcCCCCCCEEEEEE--CC--eEEEEecCcccccCC--------CcEEeccCCCCCeEcccchhhh
Confidence 98877776433 4679999996444442 34 788888887 6 55665554322
Q ss_pred ----cccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC
Q 039497 245 ----CFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS 320 (642)
Q Consensus 245 ----~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 320 (642)
+..++|||||++|++...+... ...+.+.+.... ...+.-.........+....+++..+..
T Consensus 179 e~~~~~~~~~SpDg~~la~~~~d~~~-~~~~~~~~~~~~-------------~~~~~~~~y~~~g~~~~~~~l~~~d~~~ 244 (706)
T 2z3z_A 179 EFGIEKGTFWSPKGSCLAFYRMDQSM-VKPTPIVDYHPL-------------EAESKPLYYPMAGTPSHHVTVGIYHLAT 244 (706)
T ss_dssp CTTCCCSEEECTTSSEEEEEEEECTT-SCCEEEEECCSS-------------SCEEEEECCCBTTSCCCEEEEEEEETTT
T ss_pred hcCCCceEEECCCCCEEEEEEECCCC-CceEEeeccCCC-------------CCceEEeeCCCCCCCCCeeEEEEEECCC
Confidence 3678999999999998643321 112222222100 0000000000000000011122222222
Q ss_pred CCc-eeEEeee---CCCccEEcCCCCEEEEEecC--CCceeEEEEECCCC-CeeEEee--c-C---Cceeeeeec--CCC
Q 039497 321 PVK-ELRMLRL---NGSFPSFSPDGGLIVFNHDF--ELNAGIKIAKSDGS-KRWTLIK--D-R---TAFYNSWSP--TEK 385 (642)
Q Consensus 321 ~~~-~~~~~~~---~~~~~~~spdg~~l~~~~~~--~~~~~l~~~d~~~~-~~~~l~~--~-~---~~~~~~~sp--dg~ 385 (642)
... .+..... ....+.|||||++|++.... .....|+++|++++ ..+.+.. . . .+..+.|+| ||+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~ 324 (706)
T 2z3z_A 245 GKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ 324 (706)
T ss_dssp TEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE
T ss_pred CceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE
Confidence 110 0000000 01357899999999986532 33468999999988 5455443 1 1 135689999 998
Q ss_pred EEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccC-cEECCCCCeEEEEeCCCC--ceeE
Q 039497 386 HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAF-PSCSPDGKFLVFRSGRSG--HKNL 462 (642)
Q Consensus 386 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~SpDg~~l~~~~~~~g--~~~l 462 (642)
.|+... .++..+||.++. + ++ ..+.++.+. ..+.. ++|||||++|++.+..++ ...|
T Consensus 325 ~l~~~~-------~~g~~~l~~~~~--~-----~~-----~~~~l~~~~-~~v~~~~~~spdg~~l~~~~~~~~~~~~~l 384 (706)
T 2z3z_A 325 FIWQSR-------RDGWNHLYLYDT--T-----GR-----LIRQVTKGE-WEVTNFAGFDPKGTRLYFESTEASPLERHF 384 (706)
T ss_dssp EEEEEC-------TTSSCEEEEEET--T-----SC-----EEEECCCSS-SCEEEEEEECTTSSEEEEEESSSCTTCBEE
T ss_pred EEEEEc-------cCCccEEEEEEC--C-----CC-----EEEecCCCC-eEEEeeeEEcCCCCEEEEEecCCCCceEEE
Confidence 554443 256788999885 3 33 567777655 44544 799999999999987655 4699
Q ss_pred EEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEee
Q 039497 463 FVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH 529 (642)
Q Consensus 463 ~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 529 (642)
|.+++.+++. +.++.. ..+..++|||||++|++...... ....|+++|+++++.+.++
T Consensus 385 ~~~d~~~~~~----~~l~~~-~~~~~~~~spdg~~l~~~~~~~~----~p~~i~l~d~~~~~~~~~~ 442 (706)
T 2z3z_A 385 YCIDIKGGKT----KDLTPE-SGMHRTQLSPDGSAIIDIFQSPT----VPRKVTVTNIGKGSHTLLE 442 (706)
T ss_dssp EEEETTCCCC----EESCCS-SSEEEEEECTTSSEEEEEEECSS----CSCEEEEEESSSCEEEEEE
T ss_pred EEEEcCCCCc----eeccCC-CceEEEEECCCCCEEEEEecCCC----CCcEEEEEECCCCeEeecc
Confidence 9999998874 777743 44677899999999998866543 4567999999888744333
No 27
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=4.2e-21 Score=215.66 Aligned_cols=350 Identities=11% Similarity=0.027 Sum_probs=215.6
Q ss_pred ceEEEEccCCceEecccCCCc----cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCc---eeEeecCC
Q 039497 121 ALYSTDLKASKFTRLTPYGVV----DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNK---RVIVCERG 193 (642)
Q Consensus 121 ~l~~~~~~~~~~~~lt~~~~~----~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~l~~~~~ 193 (642)
.||++++.+++.++++.+... ...++|||||++|||.......|.. .....|++|++++++. +++. ...
T Consensus 37 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~---s~~~~i~~~d~~~g~~~~~~~l~-~~~ 112 (719)
T 1z68_A 37 NIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRY---SYTATYYIYDLSNGEFVRGNELP-RPI 112 (719)
T ss_dssp CEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSS---CEEEEEEEEETTTTEECCSSCCC-SSB
T ss_pred CEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEe---ecceEEEEEECCCCccccceecC-ccc
Confidence 699999999999888765432 5679999999999998764322211 1246899999999987 5553 223
Q ss_pred CcceEeeCCe-EEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCc-------------------cccceeecC
Q 039497 194 GWPTWSGDST-IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVH-------------------CFTPAAFHD 253 (642)
Q Consensus 194 ~~~~wspdg~-~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~Spd 253 (642)
..++|||||+ ++|+. ++ +|+.+++.++ ...+++..+.. ...++||||
T Consensus 113 ~~~~~SPDG~~la~~~---~~--~i~~~~~~~g--------~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPD 179 (719)
T 1z68_A 113 QYLCWSPVGSKLAYVY---QN--NIYLKQRPGD--------PPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPN 179 (719)
T ss_dssp CCEEECSSTTCEEEEE---TT--EEEEESSTTS--------CCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTT
T ss_pred ccceECCCCCEEEEEE---CC--eEEEEeCCCC--------CcEEEecCCCcCCeEcccccceeeeecccCcccEEECCC
Confidence 4689999995 55554 34 8999999887 55666543311 146899999
Q ss_pred CcEEEEEEeccCCceeeEEEEEeecCCCC---cccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCce--eEEe
Q 039497 254 GKRLAVATRRKNRNFRHIEIYDLTLNPNF---HHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKE--LRML 328 (642)
Q Consensus 254 G~~l~~~~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 328 (642)
|++|++...+... +.+|.+...... ......+...|. .+....+++..+...... +.+.
T Consensus 180 G~~la~~~~d~~~----~~~~~~~~~~~~~~~~~~~~~yp~~g~------------~~~~~~l~~~d~~~~~~~~~~~~~ 243 (719)
T 1z68_A 180 GKFLAYAEFNDTD----IPVIAYSYYGDEQYPRTINIPYPKAGA------------KNPVVRIFIIDTTYPAYVGPQEVP 243 (719)
T ss_dssp SSEEEEEEEECTT----SCEEEEEECCSSSSCEEEEEECCBTTS------------CCCEEEEEEEESSCHHHHCCEECC
T ss_pred CCEEEEEEECCCC----CceEEeeccCCCCCccceeecCCCCCC------------CCCeeEEEEEECCCCCccceeEcc
Confidence 9999998765321 112222110000 000000111110 011112223333222110 0000
Q ss_pred --------eeCCCccEEcCCCCEEEEE--ecCCCceeEEEEE----CCCCCeeEEe----e--cCCce-----eeeeecC
Q 039497 329 --------RLNGSFPSFSPDGGLIVFN--HDFELNAGIKIAK----SDGSKRWTLI----K--DRTAF-----YNSWSPT 383 (642)
Q Consensus 329 --------~~~~~~~~~spdg~~l~~~--~~~~~~~~l~~~d----~~~~~~~~l~----~--~~~~~-----~~~~spd 383 (642)
......+.|||||+ +++. ........|+++| +++++.+.+. . ...+. .+.||||
T Consensus 244 ~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd 322 (719)
T 1z68_A 244 VPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD 322 (719)
T ss_dssp CCHHHHTSCEEEEEEEESSSSE-EEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT
T ss_pred CCccCCCCcceEEEeEEeCCCe-EEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC
Confidence 00113578999975 5554 2234456899999 8777655554 2 23344 7899999
Q ss_pred CCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCC----CCc
Q 039497 384 EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR----SGH 459 (642)
Q Consensus 384 g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~----~g~ 459 (642)
|+.|++... ..++..+||.++. + ++ ..+.++.+. ..+..+.++ ||+.|+|.+.. .+.
T Consensus 323 g~~l~~~~~-----~~~g~~~l~~~~~--~-----~~-----~~~~lt~~~-~~v~~~~~~-d~~~i~~~~~~~~~~~~~ 383 (719)
T 1z68_A 323 AISYYKIFS-----DKDGYKHIHYIKD--T-----VE-----NAIQITSGK-WEAINIFRV-TQDSLFYSSNEFEEYPGR 383 (719)
T ss_dssp SSCEEEEEE-----CTTSCEEEEEESS--C-----ST-----TCEECSCSS-SCEEEEEEE-CSSEEEEEESCGGGCTTC
T ss_pred CCeEEEEEE-----ccCCceEEEEEEC--C-----CC-----ceEecccCc-eEEEEEEEE-eCCEEEEEEecCCCCCce
Confidence 999888543 1245667777766 3 33 566777655 455566777 99999999976 566
Q ss_pred eeEEEEECCCCccccceeeCCC----CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497 460 KNLFVLDAVNGEFNGDIRQLTD----GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530 (642)
Q Consensus 460 ~~l~~~d~~~g~~~~~~~~l~~----~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 530 (642)
.+||.+++.+|.. ..+.|+. +......+.|||||++|++...... ...++++|+++++...++.
T Consensus 384 ~~l~~~~~~~g~~--~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~-----~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 384 RNIYRISIGSYPP--SKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPG-----IPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp BEEEEEECSSSSC--CEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBS-----SCEEEEECSSSCCEEEEEE
T ss_pred EEEEEEeCCCCCC--CceeccCccCCCCCceEEEEECCCCCEEEEEcCCCC-----CCeEEEEECCCCCEEEEee
Confidence 7899999866631 0355653 2234567899999999998766542 2358899998887655554
No 28
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.89 E-value=3.2e-21 Score=199.92 Aligned_cols=225 Identities=13% Similarity=0.206 Sum_probs=144.4
Q ss_pred EcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCC
Q 039497 337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD 416 (642)
Q Consensus 337 ~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 416 (642)
|+++|++|+|.... .... +. ...+.|+||++.+++.... .......|+.++. .
T Consensus 124 ~~~~g~~l~~~~~~---~~~~-----------~~----~~~~~~spdg~~~~~~~~~----~~~~~~~l~~~d~--~--- 176 (396)
T 3c5m_A 124 WKGYGTWVANSDCT---KLVG-----------IE----ILKRDWQPLTSWEKFAEFY----HTNPTCRLIKVDI--E--- 176 (396)
T ss_dssp EEEEEEEEECTTSS---EEEE-----------EE----EEGGGCCCCCSHHHHHHHH----HTCCCEEEEEEET--T---
T ss_pred cCCCCCEEEeccCC---cccc-----------cc----ccccccCCCCcceeeeeec----cCCCcceEEEEEC--C---
Confidence 78889888884321 1111 00 1246789999988775410 0123345565655 2
Q ss_pred CCCCCccccceEEccccCCCCccCcEECC-CCCeEEEEeCCCC---ceeEEEEECCCCccccceeeCCCCC--Cccccee
Q 039497 417 DNNREEIPCDVKILTKEETGNNAFPSCSP-DGKFLVFRSGRSG---HKNLFVLDAVNGEFNGDIRQLTDGP--WIDTMPS 490 (642)
Q Consensus 417 ~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g---~~~l~~~d~~~g~~~~~~~~l~~~~--~~~~~~~ 490 (642)
++ +...+.... .....+.||| ||++|+|.+.... ..+||++++++++. +.+.... ..+..+.
T Consensus 177 --~g-----~~~~~~~~~-~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~----~~l~~~~~~~~~~~~~ 244 (396)
T 3c5m_A 177 --TG-----ELEVIHQDT-AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV----RKIKEHAEGESCTHEF 244 (396)
T ss_dssp --TC-----CEEEEEEES-SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC----EESSCCCTTEEEEEEE
T ss_pred --CC-----cEEeeccCC-cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce----eEeeccCCCccccceE
Confidence 23 455555444 5677899999 8999999875221 15899999987764 6666532 2456689
Q ss_pred EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcC-CCCEEEEEEecCCcccCC
Q 039497 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSA-DGEWLLFTANLGAVMAEP 569 (642)
Q Consensus 491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~-Dg~~l~~~~~~~~~~~~~ 569 (642)
|||||++|+|.+..... ....|+++|+.+++.+.+.... + .. +.||| ||+.|++..... .
T Consensus 245 ~spdg~~l~~~~~~~~~---~~~~l~~~d~~~g~~~~l~~~~--~--------~~-~~~s~~dg~~l~~~~~~~-p---- 305 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQ---TDRVIYKANPETLENEEVMVMP--P--------CS-HLMSNFDGSLMVGDGCDA-P---- 305 (396)
T ss_dssp ECTTSSCEEEEEEETTT---CCEEEEEECTTTCCEEEEEECC--S--------EE-EEEECSSSSEEEEEECCC------
T ss_pred ECCCCCEEEEEecCCCC---ccceEEEEECCCCCeEEeeeCC--C--------CC-CCccCCCCceEEEecCCc-c----
Confidence 99999999998765421 2245999999998887776422 2 12 89999 999887754320 0
Q ss_pred CCCC----CCCCCCCcEEEEEcCCCceeeccCCCC-----------CCCCcEEecCCceEEeecC
Q 039497 570 VSWP----NQFQPYGDLYVVKLDGSGLRRLTWNGY-----------ENGTPAWHPGNQLDLGKLR 619 (642)
Q Consensus 570 ~~~~----~~~~~~~~l~~~~~~~~~~~~lt~~~~-----------~~~~~~~s~dg~~~~~~~~ 619 (642)
+.+. ........||++++.+++.++|+.... ....++|||||++++...+
T Consensus 306 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 306 VDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp ---------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred eeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence 0000 000012489999999988888886654 2567899999988765544
No 29
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.1e-19 Score=205.24 Aligned_cols=441 Identities=13% Similarity=0.052 Sum_probs=249.8
Q ss_pred cCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCcccccccc-CCCEEEEEEeccCCCccccc
Q 039497 40 TDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA-RNNKLFFISAHEQPDQIFKS 118 (642)
Q Consensus 40 t~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ 118 (642)
.+|...+...+|| |||++||. +..+|...||... .+.....+.....+. ...+ +++.|+..+ .+
T Consensus 14 ~gh~~~V~~lafs-pdg~~lAs-gs~Dg~I~lw~~~-~~~~~~~~~~~~~V~---~l~fspg~~L~S~s-~D-------- 78 (902)
T 2oaj_A 14 YGMSSKPIAAAFD-FTQNLLAI-ATVTGEVHIYGQQ-QVEVVIKLEDRSAIK---EMRFVKGIYLVVIN-AK-------- 78 (902)
T ss_dssp EECSSCEEEEEEE-TTTTEEEE-EETTSEEEEECST-TCEEEEECSSCCCEE---EEEEETTTEEEEEE-TT--------
T ss_pred cCCCCCcEEEEEC-CCCCEEEE-EeCCCEEEEEeCC-CcEEEEEcCCCCCEE---EEEEcCCCEEEEEE-Cc--------
Confidence 3667778899999 99999994 5567888888641 111111111101111 1122 355344433 32
Q ss_pred ccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee--------
Q 039497 119 WSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC-------- 190 (642)
Q Consensus 119 ~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-------- 190 (642)
+.|.+.++.+++......+.......+|+|||++||....++ .|.+|++.+++......
T Consensus 79 -~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg------------~V~lwd~~~~~~~~~~i~~~~~~~~ 145 (902)
T 2oaj_A 79 -DTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNG------------SMIVYDIDRDQLSSFKLDNLQKSSF 145 (902)
T ss_dssp -CEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTS------------CEEEEETTTTEEEEEEECCHHHHHT
T ss_pred -CeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCC------------cEEEEECCCCccccceecccccccc
Confidence 145555888776543223444556789999999999887665 78999998876432111
Q ss_pred ---cC-C--CcceEeeCC-eEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCC------------------CCcc
Q 039497 191 ---ER-G--GWPTWSGDS-TIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPP------------------GVHC 245 (642)
Q Consensus 191 ---~~-~--~~~~wspdg-~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~------------------~~~~ 245 (642)
.+ + ..++|+|++ .++++. ..+|. | .+++.++. ....+..+ ...+
T Consensus 146 ~~~~h~~~V~sl~~sp~~~~~l~~g-~~dg~--v-lWd~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V 214 (902)
T 2oaj_A 146 FPAARLSPIVSIQWNPRDIGTVLIS-YEYVT--L-TYSLVENE-------IKQSFIYELPPFAPGGDFSEKTNEKRTPKV 214 (902)
T ss_dssp CSSSCCCCCCEEEEETTEEEEEEEE-CSSCE--E-EEETTTTE-------EEEEECCCBCTTCCCSTTCCCTTSCBCCCE
T ss_pred ccccCCCCeEEEEEccCCCCEEEEE-eCCCc--E-EEECCCCc-------eEEEEecccCCcCCCcccccccccccCCCe
Confidence 11 1 245999975 566665 55674 5 56666653 22333322 2346
Q ss_pred ccceeecCCcEEEEEEeccCCceeeEEEEEeecCC--------------------------CCcccCCeec----CCCCE
Q 039497 246 FTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNP--------------------------NFHHYNPFVS----ANSEF 295 (642)
Q Consensus 246 ~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~--------------------------~~~~~~~~~s----pDg~~ 295 (642)
..++|+|||++|+....++ .|.+||+..+. ...+...+|+ ||+..
T Consensus 215 ~~v~fspdg~~lasgs~Dg-----~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ 289 (902)
T 2oaj_A 215 IQSLYHPNSLHIITIHEDN-----SLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTS 289 (902)
T ss_dssp EEEEECTTSSEEEEEETTC-----CEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEE
T ss_pred EEEEEcCCCCEEEEEECCC-----eEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCE
Confidence 7789999999999866554 89999983211 1124456774 56556
Q ss_pred EEEEEeecCCCCCCcccceEeeccC---------------CCceeEEeee--CC--CccEEcC----------CCCEEEE
Q 039497 296 IGYHRFRGESTEGQSTIPHLEPVAS---------------PVKELRMLRL--NG--SFPSFSP----------DGGLIVF 346 (642)
Q Consensus 296 l~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~--~~--~~~~~sp----------dg~~l~~ 346 (642)
+++...............+...... .......... .. ....+.+ |...++.
T Consensus 290 ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~ 369 (902)
T 2oaj_A 290 LLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILL 369 (902)
T ss_dssp EEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEE
T ss_pred EEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEE
Confidence 6555422211100111111110000 0000111111 11 1112222 3444554
Q ss_pred EecCCCceeEEEEECCCCCeeEE------------------e-----------------------e--cCCceeeeeecC
Q 039497 347 NHDFELNAGIKIAKSDGSKRWTL------------------I-----------------------K--DRTAFYNSWSPT 383 (642)
Q Consensus 347 ~~~~~~~~~l~~~d~~~~~~~~l------------------~-----------------------~--~~~~~~~~~spd 383 (642)
... ...|+++++..+..... . . ...+..++|+||
T Consensus 370 ~s~---dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spd 446 (902)
T 2oaj_A 370 ILG---NGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEY 446 (902)
T ss_dssp EET---TSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSE
T ss_pred EcC---CCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccccc
Confidence 442 35677778755431100 0 0 112345678999
Q ss_pred CCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE--cc-----ccCCCCccCcEECCCCCeEEEEeCC
Q 039497 384 EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI--LT-----KEETGNNAFPSCSPDGKFLVFRSGR 456 (642)
Q Consensus 384 g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--l~-----~~~~~~~~~~~~SpDg~~l~~~~~~ 456 (642)
|+.|+..+. ++.+++|++.. +... ...... +. .+. ..+..++|||||++|+..+.+
T Consensus 447 g~~laSgs~-------DgtVrlWd~~~--------g~~~-~~~~~~~~l~~~~~~~h~-~~V~svafspdg~~LAsgs~D 509 (902)
T 2oaj_A 447 GTAFITGHS-------NGSVRIYDASH--------GDIQ-DNASFEVNLSRTLNKAKE-LAVDKISFAAETLELAVSIET 509 (902)
T ss_dssp EEEEEEEET-------TSEEEEEESSC--------CTTT-TTBCEEEEHHHHTTCSSS-CCEEEEEEETTTTEEEEEETT
T ss_pred CcEEEEecC-------CCcEEEEECCC--------cccc-CCceEEeechhhcCCCCC-CceeEEEecCCCCeEEEEecC
Confidence 998888774 78999999865 1100 000011 11 233 568889999999999988743
Q ss_pred CCceeEEEEECCCCccc------------------------------------------cceeeCCCCCCcccceeEecC
Q 039497 457 SGHKNLFVLDAVNGEFN------------------------------------------GDIRQLTDGPWIDTMPSWSPK 494 (642)
Q Consensus 457 ~g~~~l~~~d~~~g~~~------------------------------------------~~~~~l~~~~~~~~~~~~spd 494 (642)
+ .|.+|++++++.. ..+..+..+...+..++||||
T Consensus 510 -g--tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpd 586 (902)
T 2oaj_A 510 -G--DVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNI 586 (902)
T ss_dssp -S--CEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBT
T ss_pred -c--EEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCC
Confidence 3 6777776655200 002345556677888999999
Q ss_pred CCEEEEEecCCCCCCCCceeEEEEeCCCCceEE---eee--cCCCCCCCcccccccceEEc-----CCC---CEEEEEEe
Q 039497 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR---IHV--AGPEGSGDVDRERINHVCFS-----ADG---EWLLFTAN 561 (642)
Q Consensus 495 G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---l~~--~~~~~~~~~~~~~~~~~~~S-----~Dg---~~l~~~~~ 561 (642)
| +|+..+.++. |.+||+++..... +.. .++.. .+..++|| ||| ++|+..+.
T Consensus 587 G-~lAsgs~D~t--------v~lwd~~~~~~~~~~~~~~~~~gh~~-------~V~sv~Fs~~~~~~Dg~~~~~l~sgs~ 650 (902)
T 2oaj_A 587 G-FVGIAYAAGS--------LMLIDRRGPAIIYMENIREISGAQSA-------CVTCIEFVIMEYGDDGYSSILMVCGTD 650 (902)
T ss_dssp S-EEEEEETTSE--------EEEEETTTTEEEEEEEGGGTCSSCCC-------CEEEEEEEEEECTTSSSEEEEEEEEET
T ss_pred c-EEEEEeCCCc--------EEEEECCCCeEEEEeehhHhcccccc-------ceEEEEEEEEecCCCCCcceEEEEEec
Confidence 9 8998887764 8999998765532 111 13333 68899999 986 77777776
Q ss_pred cC
Q 039497 562 LG 563 (642)
Q Consensus 562 ~~ 563 (642)
++
T Consensus 651 D~ 652 (902)
T 2oaj_A 651 MG 652 (902)
T ss_dssp TS
T ss_pred CC
Confidence 64
No 30
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.86 E-value=7.4e-19 Score=177.51 Aligned_cols=310 Identities=13% Similarity=0.033 Sum_probs=202.2
Q ss_pred cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCC-CceeEeecCC--CcceEeeCCeEEEEEecCCCceEEE
Q 039497 142 DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDP-NKRVIVCERG--GWPTWSGDSTIYFHRQADDGWWSIF 218 (642)
Q Consensus 142 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~l~~~~~--~~~~wspdg~~~~~~~~~~g~~~l~ 218 (642)
...++|||||++||+......+. .+..... .......... ..++|+|+++++++. . +|...||
T Consensus 12 v~~~~~s~dg~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~-dg~i~iw 77 (337)
T 1gxr_A 12 AYSFHVTADGQMQPVPFPPDALI------------GPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTG-G-KGCVKVW 77 (337)
T ss_dssp CCEEEECSSSCEEECCCCTTSSS------------STTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEE-C-BSEEEEE
T ss_pred eeEEEECCCCCEEEeecCCCcEe------------ccccCCccccceeccCCCceEEEEEecCCcEEEEc-C-CCeEEEE
Confidence 34589999999999776444211 1111000 0111111111 246999999988887 3 6755555
Q ss_pred EEecCCCcccccCCccceeeC--CCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEE
Q 039497 219 RVSFPENLEFLGFPIAPTRVT--PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFI 296 (642)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l 296 (642)
.++...... ....+. .+...+..++|+|||++|++...++ .+.+||+.... ..
T Consensus 78 ~~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~--------------~~ 132 (337)
T 1gxr_A 78 DISHPGNKS------PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS-----TLSIWDLAAPT--------------PR 132 (337)
T ss_dssp ETTSTTCCS------CSEEEECSCTTSBEEEEEECTTSSEEEEEESSS-----EEEEEECCCC----------------E
T ss_pred ECCCCCcee------eeecccccCCCCcEEEEEEcCCCCEEEEEcCCC-----cEEEEECCCCC--------------cc
Confidence 543322110 112222 4555677889999999998865443 78888873211 00
Q ss_pred EEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCC
Q 039497 297 GYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRT 374 (642)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~ 374 (642)
.. ..+...... ...+.|+|+++.|+.... ...|.++++.+++...... ...
T Consensus 133 ~~-----------------~~~~~~~~~-------i~~~~~~~~~~~l~~~~~---dg~v~~~d~~~~~~~~~~~~~~~~ 185 (337)
T 1gxr_A 133 IK-----------------AELTSSAPA-------CYALAISPDSKVCFSCCS---DGNIAVWDLHNQTLVRQFQGHTDG 185 (337)
T ss_dssp EE-----------------EEEECSSSC-------EEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEECCCSSC
T ss_pred ee-----------------eecccCCCc-------eEEEEECCCCCEEEEEeC---CCcEEEEeCCCCceeeeeecccCc
Confidence 00 000000001 124589999998887654 3678899998876554443 566
Q ss_pred ceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEe
Q 039497 375 AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRS 454 (642)
Q Consensus 375 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~ 454 (642)
+..+.|+|+++.|+.... ++.+.+|++.. +. ....+ ... ..+..+.|+|||+.|+..+
T Consensus 186 i~~~~~~~~~~~l~~~~~-------dg~i~~~d~~~--------~~-----~~~~~-~~~-~~v~~~~~s~~~~~l~~~~ 243 (337)
T 1gxr_A 186 ASCIDISNDGTKLWTGGL-------DNTVRSWDLRE--------GR-----QLQQH-DFT-SQIFSLGYCPTGEWLAVGM 243 (337)
T ss_dssp EEEEEECTTSSEEEEEET-------TSEEEEEETTT--------TE-----EEEEE-ECS-SCEEEEEECTTSSEEEEEE
T ss_pred eEEEEECCCCCEEEEEec-------CCcEEEEECCC--------Cc-----eEeee-cCC-CceEEEEECCCCCEEEEEc
Confidence 889999999999988774 67889998754 11 22233 233 5677899999999999887
Q ss_pred CCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCC
Q 039497 455 GRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534 (642)
Q Consensus 455 ~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 534 (642)
.. ..|++|++.+++. ..+..+...+..+.|+|||++|+..+.++. |++|++.+++...... ..
T Consensus 244 ~~---~~i~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--------i~~~~~~~~~~~~~~~--~~ 306 (337)
T 1gxr_A 244 ES---SNVEVLHVNKPDK----YQLHLHESCVLSLKFAYCGKWFVSTGKDNL--------LNAWRTPYGASIFQSK--ES 306 (337)
T ss_dssp TT---SCEEEEETTSSCE----EEECCCSSCEEEEEECTTSSEEEEEETTSE--------EEEEETTTCCEEEEEE--CS
T ss_pred CC---CcEEEEECCCCCe----EEEcCCccceeEEEECCCCCEEEEecCCCc--------EEEEECCCCeEEEEec--CC
Confidence 43 3799999998774 666667777888999999999988877653 9999998877654332 23
Q ss_pred CCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 535 GSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 535 ~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
. .+..+.|+|||+.|+..+.++
T Consensus 307 ~-------~v~~~~~s~~~~~l~~~~~dg 328 (337)
T 1gxr_A 307 S-------SVLSCDISVDDKYIVTGSGDK 328 (337)
T ss_dssp S-------CEEEEEECTTSCEEEEEETTS
T ss_pred C-------cEEEEEECCCCCEEEEecCCC
Confidence 3 567899999999998877654
No 31
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=1.9e-19 Score=178.07 Aligned_cols=266 Identities=21% Similarity=0.292 Sum_probs=192.6
Q ss_pred eEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeec-CCCCcccCCeecCCC
Q 039497 215 WSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL-NPNFHHYNPFVSANS 293 (642)
Q Consensus 215 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~spDg 293 (642)
..|+.+++.++ +...+..+...+..++|||||++|++.. . ..+++||+.. ...
T Consensus 22 ~~i~~~d~~~~--------~~~~~~~~~~~v~~~~~spdg~~l~~~~-~-----~~i~~~d~~~~~~~------------ 75 (297)
T 2ojh_A 22 SSIEIFNIRTR--------KMRVVWQTPELFEAPNWSPDGKYLLLNS-E-----GLLYRLSLAGDPSP------------ 75 (297)
T ss_dssp EEEEEEETTTT--------EEEEEEEESSCCEEEEECTTSSEEEEEE-T-----TEEEEEESSSCCSC------------
T ss_pred eeEEEEeCCCC--------ceeeeccCCcceEeeEECCCCCEEEEEc-C-----CeEEEEeCCCCCCc------------
Confidence 48888898887 5556655555677899999999999853 2 2788888732 110
Q ss_pred CEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEec-CCCceeEEEEECCCCCeeEEeec
Q 039497 294 EFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHD-FELNAGIKIAKSDGSKRWTLIKD 372 (642)
Q Consensus 294 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~-~~~~~~l~~~d~~~~~~~~l~~~ 372 (642)
. ...... .......+.|+|||++|++... ..+...||.++++++..+.+...
T Consensus 76 ------------------~---~~~~~~------~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 128 (297)
T 2ojh_A 76 ------------------E---KVDTGF------ATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN 128 (297)
T ss_dssp ------------------E---ECCCTT------CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS
T ss_pred ------------------e---Eecccc------ccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecC
Confidence 0 000000 0011235799999999999774 23578999999988887776665
Q ss_pred CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEE
Q 039497 373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF 452 (642)
Q Consensus 373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~ 452 (642)
..+..+.|+|||+.|+++.. .+..+.||.++. + ++ ....+.... ..+..+.|+|||++|++
T Consensus 129 ~~~~~~~~spdg~~l~~~~~------~~~~~~l~~~~~--~-----~~-----~~~~~~~~~-~~~~~~~~s~dg~~l~~ 189 (297)
T 2ojh_A 129 LPSYWHGWSPDGKSFTYCGI------RDQVFDIYSMDI--D-----SG-----VETRLTHGE-GRNDGPDYSPDGRWIYF 189 (297)
T ss_dssp SSEEEEEECTTSSEEEEEEE------ETTEEEEEEEET--T-----TC-----CEEECCCSS-SCEEEEEECTTSSEEEE
T ss_pred CCccceEECCCCCEEEEEEC------CCCceEEEEEEC--C-----CC-----cceEcccCC-CccccceECCCCCEEEE
Confidence 55778899999999998763 257789999987 3 33 556666655 66778999999999999
Q ss_pred EeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCC---CCCceeEEEEeCCCCceEEee
Q 039497 453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD---NVEAFSLYVIKPDGSGLRRIH 529 (642)
Q Consensus 453 ~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~---~~~~~~l~~~d~~~~~~~~l~ 529 (642)
.+..++...||.++..+++ +..+......+..+.|+|||++|++.+.+.... ......|++||+++++.+.+.
T Consensus 190 ~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 190 NSSRTGQMQIWRVRVDGSS----VERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF 265 (297)
T ss_dssp EECTTSSCEEEEEETTSSC----EEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred EecCCCCccEEEECCCCCC----cEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence 9877777899999987666 477877666677889999999999988753210 012367999999998877665
Q ss_pred ec-CCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 530 VA-GPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 530 ~~-~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
.. .... .+..+.|+|||++|++.+.+.
T Consensus 266 ~~~~~~~-------~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 266 DLFGGQG-------TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEESTT-------TSCSCCBCTTSSEEEEEEECC
T ss_pred ccCCCCc-------ccccceECCCCCEEEEEEecc
Confidence 42 2222 457799999999999998764
No 32
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.5e-19 Score=188.97 Aligned_cols=334 Identities=10% Similarity=0.010 Sum_probs=215.9
Q ss_pred CccCCceeCCCCc-EEEEEecCCCCCCCCCCCCeeeEEEEEe----cCCCc------ee-Eeec---------CC---Cc
Q 039497 140 VVDYSPSVSYSGK-FIAVASYESRPWPGEFHELNTDIVVFQE----SDPNK------RV-IVCE---------RG---GW 195 (642)
Q Consensus 140 ~~~~~~~~SPDG~-~la~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~------~~-l~~~---------~~---~~ 195 (642)
......+|||||+ +||+...+. .|.+|++ .+++. .. +... +. ..
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNS------------VARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTC 113 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBT------------EEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEE
T ss_pred CceEEEEECCCCCcEEEEecCCc------------eEEEEEEecccCCccccccccccccccccccccccccCCCCceEE
Confidence 4456789999999 999887655 7889999 87772 22 2221 11 24
Q ss_pred ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEE
Q 039497 196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD 275 (642)
Q Consensus 196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d 275 (642)
++|+||+.++++. ..+|...|| +..+. ....+..+...+..++|+|+|++|+....++ .+.+||
T Consensus 114 ~~~s~~~~~l~~~-~~dg~i~i~--~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd 177 (425)
T 1r5m_A 114 LAWSHDGNSIVTG-VENGELRLW--NKTGA--------LLNVLNFHRAPIVSVKWNKDGTHIISMDVEN-----VTILWN 177 (425)
T ss_dssp EEECTTSSEEEEE-ETTSCEEEE--ETTSC--------EEEEECCCCSCEEEEEECTTSSEEEEEETTC-----CEEEEE
T ss_pred EEEcCCCCEEEEE-eCCCeEEEE--eCCCC--------eeeeccCCCccEEEEEECCCCCEEEEEecCC-----eEEEEE
Confidence 5999999888877 457755665 44443 5566776776788899999999998865544 788998
Q ss_pred eecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCcee
Q 039497 276 LTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG 355 (642)
Q Consensus 276 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 355 (642)
+... +.+.......... ...... .............|+|++. ++.. .....
T Consensus 178 ~~~~--------------~~~~~~~~~~~~~----~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~---~~~g~ 228 (425)
T 1r5m_A 178 VISG--------------TVMQHFELKETGG----SSINAE-------NHSGDGSLGVDVEWVDDDK-FVIP---GPKGA 228 (425)
T ss_dssp TTTT--------------EEEEEECCC--------------------------CCCBSCCEEEETTE-EEEE---CGGGC
T ss_pred CCCC--------------cEEEEeeccccCc----cceeec-------cccCCcceeeEEEEcCCCE-EEEE---cCCCe
Confidence 7321 1111110000000 000000 0000000123568888875 4443 23478
Q ss_pred EEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcccc
Q 039497 356 IKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE 433 (642)
Q Consensus 356 l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 433 (642)
|+++++..++...... ...+..+.|+|+++.|+.... ++.+.+|++.. +. ....+..+
T Consensus 229 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------d~~i~i~d~~~--------~~-----~~~~~~~~ 288 (425)
T 1r5m_A 229 IFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD-------DGTLRIWHGGN--------GN-----SQNCFYGH 288 (425)
T ss_dssp EEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET-------TSCEEEECSSS--------BS-----CSEEECCC
T ss_pred EEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC-------CCEEEEEECCC--------Cc-----cceEecCC
Confidence 9999998876654443 566889999999998888764 67899998755 22 44555544
Q ss_pred CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCce
Q 039497 434 ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF 513 (642)
Q Consensus 434 ~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~ 513 (642)
. ..+..+.|+||| .|+..+. ...|.+||+.+++. +..+..+...+..+.|+|+|++|+..+.++.
T Consensus 289 ~-~~i~~~~~~~~~-~l~~~~~---d~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~------- 353 (425)
T 1r5m_A 289 S-QSIVSASWVGDD-KVISCSM---DGSVRLWSLKQNTL---LALSIVDGVPIFAGRISQDGQKYAVAFMDGQ------- 353 (425)
T ss_dssp S-SCEEEEEEETTT-EEEEEET---TSEEEEEETTTTEE---EEEEECTTCCEEEEEECTTSSEEEEEETTSC-------
T ss_pred C-ccEEEEEECCCC-EEEEEeC---CCcEEEEECCCCcE---eEecccCCccEEEEEEcCCCCEEEEEECCCe-------
Confidence 4 677889999999 6666553 34899999998886 5556655667788999999999998887654
Q ss_pred eEEEEeCCCCc--------------------eEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCC
Q 039497 514 SLYVIKPDGSG--------------------LRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP 573 (642)
Q Consensus 514 ~l~~~d~~~~~--------------------~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~ 573 (642)
|++||+.+++ ...... .+.. ...+..+.|+|||++|+..+.++
T Consensus 354 -i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~v~~~~~s~~~~~l~~~~~dg---------- 416 (425)
T 1r5m_A 354 -VNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ-SSQD-----NDYIFDLSWNCAGNKISVAYSLQ---------- 416 (425)
T ss_dssp -EEEEECHHHHC--------------CEECCEEEEEC-CTTC-----CCCEEEEEECTTSSEEEEEESSS----------
T ss_pred -EEEEECCCCccceeeeecccccccCcccchhhhhhc-Cccc-----CCceEEEEccCCCceEEEEecCc----------
Confidence 9999997665 222221 1110 00467899999999998877654
Q ss_pred CCCCCCCcEEEEEcCC
Q 039497 574 NQFQPYGDLYVVKLDG 589 (642)
Q Consensus 574 ~~~~~~~~l~~~~~~~ 589 (642)
.|.+|++.|
T Consensus 417 -------~i~iw~~~g 425 (425)
T 1r5m_A 417 -------EGSVVAIPG 425 (425)
T ss_dssp -------CCEEEECCC
T ss_pred -------eEEEEeecC
Confidence 677777754
No 33
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.86 E-value=3e-19 Score=180.37 Aligned_cols=311 Identities=11% Similarity=0.048 Sum_probs=210.4
Q ss_pred cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEE
Q 039497 195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIY 274 (642)
Q Consensus 195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~ 274 (642)
.++|+|||+++++....+. . ..+...... .......+...+..++|+|+|++|+... + ..+.+|
T Consensus 14 ~~~~s~dg~~~~~~~~~~~-~--~~~~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~~~~-d-----g~i~iw 77 (337)
T 1gxr_A 14 SFHVTADGQMQPVPFPPDA-L--IGPGIPRHA-------RQINTLNHGEVVCAVTISNPTRHVYTGG-K-----GCVKVW 77 (337)
T ss_dssp EEEECSSSCEEECCCCTTS-S--SSTTCCSEE-------EEEEEECCSSCCCEEEECSSSSEEEEEC-B-----SEEEEE
T ss_pred EEEECCCCCEEEeecCCCc-E--eccccCCcc-------ccceeccCCCceEEEEEecCCcEEEEcC-C-----CeEEEE
Confidence 3699999988876632222 1 111111111 2233345566788899999999988854 3 389999
Q ss_pred EeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCce
Q 039497 275 DLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA 354 (642)
Q Consensus 275 d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 354 (642)
|+....... ............. ...+.|+|+++.|+.... ..
T Consensus 78 ~~~~~~~~~----------------------------~~~~~~~~~~~~~-------v~~~~~~~~~~~l~~~~~---d~ 119 (337)
T 1gxr_A 78 DISHPGNKS----------------------------PVSQLDCLNRDNY-------IRSCKLLPDGCTLIVGGE---AS 119 (337)
T ss_dssp ETTSTTCCS----------------------------CSEEEECSCTTSB-------EEEEEECTTSSEEEEEES---SS
T ss_pred ECCCCCcee----------------------------eeecccccCCCCc-------EEEEEEcCCCCEEEEEcC---CC
Confidence 883321000 0000000000011 124589999998888654 36
Q ss_pred eEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497 355 GIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL 430 (642)
Q Consensus 355 ~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 430 (642)
.|.++++.+++...... ...+..+.|+|+++.|+.... ++.+.+|++.. +. ....+
T Consensus 120 ~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------dg~v~~~d~~~--------~~-----~~~~~ 179 (337)
T 1gxr_A 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS-------DGNIAVWDLHN--------QT-----LVRQF 179 (337)
T ss_dssp EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET-------TSCEEEEETTT--------TE-----EEEEE
T ss_pred cEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC-------CCcEEEEeCCC--------Cc-----eeeee
Confidence 78889998876333222 456788999999999988774 67889998754 11 34455
Q ss_pred cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCC
Q 039497 431 TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV 510 (642)
Q Consensus 431 ~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~ 510 (642)
..+. ..+..+.|+|||++|+..+. ...|++||+.+++. +..+ .....+..+.|+|+|+.|++.+.++.
T Consensus 180 ~~~~-~~i~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~~---~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~---- 247 (337)
T 1gxr_A 180 QGHT-DGASCIDISNDGTKLWTGGL---DNTVRSWDLREGRQ---LQQH-DFTSQIFSLGYCPTGEWLAVGMESSN---- 247 (337)
T ss_dssp CCCS-SCEEEEEECTTSSEEEEEET---TSEEEEEETTTTEE---EEEE-ECSSCEEEEEECTTSSEEEEEETTSC----
T ss_pred eccc-CceEEEEECCCCCEEEEEec---CCcEEEEECCCCce---Eeee-cCCCceEEEEECCCCCEEEEEcCCCc----
Confidence 5444 67788999999999988774 34899999998875 3333 34456778899999999998887654
Q ss_pred CceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497 511 EAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590 (642)
Q Consensus 511 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 590 (642)
|++||+.+++...+. .+.. .+..+.|+|||+.|+..+.++ .|.+|++..+
T Consensus 248 ----i~~~~~~~~~~~~~~--~~~~-------~v~~~~~~~~~~~l~~~~~dg-----------------~i~~~~~~~~ 297 (337)
T 1gxr_A 248 ----VEVLHVNKPDKYQLH--LHES-------CVLSLKFAYCGKWFVSTGKDN-----------------LLNAWRTPYG 297 (337)
T ss_dssp ----EEEEETTSSCEEEEC--CCSS-------CEEEEEECTTSSEEEEEETTS-----------------EEEEEETTTC
T ss_pred ----EEEEECCCCCeEEEc--CCcc-------ceeEEEECCCCCEEEEecCCC-----------------cEEEEECCCC
Confidence 999999887765543 3333 578899999999988777553 7899999887
Q ss_pred ceeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497 591 GLRRLTWNGYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 591 ~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
+......+...+..+.|+||++++++....+
T Consensus 298 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 328 (337)
T 1gxr_A 298 ASIFQSKESSSVLSCDISVDDKYIVTGSGDK 328 (337)
T ss_dssp CEEEEEECSSCEEEEEECTTSCEEEEEETTS
T ss_pred eEEEEecCCCcEEEEEECCCCCEEEEecCCC
Confidence 7665555566678899999999988765544
No 34
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.4e-18 Score=198.29 Aligned_cols=432 Identities=10% Similarity=0.010 Sum_probs=240.7
Q ss_pred eeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCcccccc
Q 039497 17 YGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRP 96 (642)
Q Consensus 17 ~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~ 96 (642)
..|.|.+.+..+ .+......|...+...+|+ | |++|+ +...++...||.+..+ +....+.....+. .-..
T Consensus 37 ~Dg~I~lw~~~~-----~~~~~~~~~~~~V~~l~fs-p-g~~L~-S~s~D~~v~lWd~~~~-~~~~~~~~~~~V~-~v~~ 106 (902)
T 2oaj_A 37 VTGEVHIYGQQQ-----VEVVIKLEDRSAIKEMRFV-K-GIYLV-VINAKDTVYVLSLYSQ-KVLTTVFVPGKIT-SIDT 106 (902)
T ss_dssp TTSEEEEECSTT-----CEEEEECSSCCCEEEEEEE-T-TTEEE-EEETTCEEEEEETTTC-SEEEEEECSSCEE-EEEC
T ss_pred CCCEEEEEeCCC-----cEEEEEcCCCCCEEEEEEc-C-CCEEE-EEECcCeEEEEECCCC-cEEEEEcCCCCEE-EEEE
Confidence 356788887766 6655555677888999999 9 88777 4556888999987332 2111111101110 0011
Q ss_pred ccCCCEEEEEEeccCCCcccccccceEEEEccCCceEe------------cccCCCccCCceeCCCC-cEEEEEecCCCC
Q 039497 97 VARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTR------------LTPYGVVDYSPSVSYSG-KFIAVASYESRP 163 (642)
Q Consensus 97 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------------lt~~~~~~~~~~~SPDG-~~la~~~~~~~~ 163 (642)
..+++.++. ...+ +.|.++++.+++... +..+.......+|+|++ ..|+....+.
T Consensus 107 sp~g~~l~s-gs~d---------g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg-- 174 (902)
T 2oaj_A 107 DASLDWMLI-GLQN---------GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYV-- 174 (902)
T ss_dssp CTTCSEEEE-EETT---------SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSC--
T ss_pred CCCCCEEEE-EcCC---------CcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCC--
Confidence 224555544 4332 246666888876532 12233445678999975 5666665444
Q ss_pred CCCCCCCCeeeEEEEEecCCCceeEeecC-------------------C--CcceEeeCCeEEEEEecCCCceEEEEEec
Q 039497 164 WPGEFHELNTDIVVFQESDPNKRVIVCER-------------------G--GWPTWSGDSTIYFHRQADDGWWSIFRVSF 222 (642)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-------------------~--~~~~wspdg~~~~~~~~~~g~~~l~~~~~ 222 (642)
.| +|++.+++..+....+ . ..++|+|||.++++. ..+|...|| +.
T Consensus 175 ----------~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasg-s~Dg~i~lW--d~ 240 (902)
T 2oaj_A 175 ----------TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITI-HEDNSLVFW--DA 240 (902)
T ss_dssp ----------EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEE-ETTCCEEEE--ET
T ss_pred ----------cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEE-ECCCeEEEE--EC
Confidence 67 9999888755443321 1 135999999988887 567855555 55
Q ss_pred CCCcccccCCccce--eeC----C------------CCCccccceee----cCCcEEEEEE-eccCCceeeEEEEEeec-
Q 039497 223 PENLEFLGFPIAPT--RVT----P------------PGVHCFTPAAF----HDGKRLAVAT-RRKNRNFRHIEIYDLTL- 278 (642)
Q Consensus 223 ~~~~~~~~~~~~~~--~l~----~------------~~~~~~~~~~S----pdG~~l~~~~-~~~~~~~~~i~~~d~~~- 278 (642)
.++. ... .+. . +...+..++|+ ||+..++++. .........+.+|++..
T Consensus 241 ~~g~-------~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~ 313 (902)
T 2oaj_A 241 NSGH-------MIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYT 313 (902)
T ss_dssp TTCC-------EEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEEC
T ss_pred CCCc-------EEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCC
Confidence 5552 111 111 0 11235567784 5655565554 22222233677776411
Q ss_pred --------------------------CCCCcccCCeecC----------CCCEEEEEEeecCCCCCCcccceEee-----
Q 039497 279 --------------------------NPNFHHYNPFVSA----------NSEFIGYHRFRGESTEGQSTIPHLEP----- 317 (642)
Q Consensus 279 --------------------------~~~~~~~~~~~sp----------Dg~~l~~~~~~~~~~~~~~~~~~~~~----- 317 (642)
.....+....+.+ |+..++....++. ...|-..
T Consensus 314 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~------l~~~~~~~g~~~ 387 (902)
T 2oaj_A 314 PRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE------IETMLYPSGIFT 387 (902)
T ss_dssp CCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC------EEEEETTTCCEE
T ss_pred CCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc------EEEEECCCCCcc
Confidence 0111111122222 2223333322221 1111100
Q ss_pred ---------ccCCCceeE---Ee-------------------eeC-----CCccEEcCCCCEEEEEecCCCceeEEEEEC
Q 039497 318 ---------VASPVKELR---ML-------------------RLN-----GSFPSFSPDGGLIVFNHDFELNAGIKIAKS 361 (642)
Q Consensus 318 ---------~~~~~~~~~---~~-------------------~~~-----~~~~~~spdg~~l~~~~~~~~~~~l~~~d~ 361 (642)
+......+. .. ... ....+|+|||+.|+..+. ...|.++|+
T Consensus 388 ~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~---DgtVrlWd~ 464 (902)
T 2oaj_A 388 DKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHS---NGSVRIYDA 464 (902)
T ss_dssp CCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEET---TSEEEEEES
T ss_pred cccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecC---CCcEEEEEC
Confidence 000000000 00 001 123467999998887664 367888898
Q ss_pred CCCCeeE---E----------eecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCC------CCCc
Q 039497 362 DGSKRWT---L----------IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDN------NREE 422 (642)
Q Consensus 362 ~~~~~~~---l----------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~ 422 (642)
.++.... + .....+..++|||||+.|+..+. ++.++||++.. ...+.. ....
T Consensus 465 ~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~-------DgtV~lwd~~~--~~~~~~~~~~~~~~~~ 535 (902)
T 2oaj_A 465 SHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIE-------TGDVVLFKYEV--NQFYSVENRPESGDLE 535 (902)
T ss_dssp SCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEET-------TSCEEEEEEEE--CCC-------------
T ss_pred CCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEec-------CcEEEEEEecC--ccccCccccCCCcccc
Confidence 8765321 1 11346889999999999998874 78999999976 100000 0000
Q ss_pred -------cc---------------------cceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcccc
Q 039497 423 -------IP---------------------CDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474 (642)
Q Consensus 423 -------~~---------------------~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~ 474 (642)
+. .....+..+. ..+..++||||| +|+..+. +..|.+||++++..
T Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~-~~V~svafSpdG-~lAsgs~---D~tv~lwd~~~~~~-- 608 (902)
T 2oaj_A 536 MNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANK-GKTSAINNSNIG-FVGIAYA---AGSLMLIDRRGPAI-- 608 (902)
T ss_dssp --CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCS-CSEEEEEECBTS-EEEEEET---TSEEEEEETTTTEE--
T ss_pred eeeeeccccCCccccccccccCCCCCCCccceeEEEEcCC-CcEEEEEecCCc-EEEEEeC---CCcEEEEECCCCeE--
Confidence 00 0123344444 678889999999 8887774 34799999987653
Q ss_pred cee-----eCC-CCCCcccceeEe-----cCC---CEEEEEecCCCCCCCCceeEEEEeC---CCCce
Q 039497 475 DIR-----QLT-DGPWIDTMPSWS-----PKG---DLIAFSSNRHNPDNVEAFSLYVIKP---DGSGL 525 (642)
Q Consensus 475 ~~~-----~l~-~~~~~~~~~~~s-----pdG---~~l~~~~~~~~~~~~~~~~l~~~d~---~~~~~ 525 (642)
+. .+. .+...+..++|| ||| ++|+..+.++. |.+||+ .+++.
T Consensus 609 -~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~t--------v~~wd~~p~~~g~~ 667 (902)
T 2oaj_A 609 -IYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGE--------VITYKILPASGGKF 667 (902)
T ss_dssp -EEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSE--------EEEEEEEECGGGCE
T ss_pred -EEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCc--------EEEEEEecCCCCcE
Confidence 21 232 455668889999 886 77887777654 888888 55543
No 35
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=4.1e-19 Score=175.58 Aligned_cols=240 Identities=20% Similarity=0.240 Sum_probs=177.7
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCC-CCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEE
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDG-SKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARV 408 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~-~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~ 408 (642)
..+.|+|||++|++.. ...|+++++++ ++...+.. ...+..+.|+|||+.|++.... .+....||.+
T Consensus 45 ~~~~~spdg~~l~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-----~~~~~~l~~~ 115 (297)
T 2ojh_A 45 EAPNWSPDGKYLLLNS----EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKV-----EFGKSAIYLL 115 (297)
T ss_dssp EEEEECTTSSEEEEEE----TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECT-----TTSSCEEEEE
T ss_pred EeeEECCCCCEEEEEc----CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeC-----CCCcceEEEE
Confidence 4679999999999965 35899999998 87776654 2456789999999999998842 2356788888
Q ss_pred EeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccc
Q 039497 409 SFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTM 488 (642)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~ 488 (642)
+. + ++ ..+.+.... ....+.|+|||++|++....++...||.++..+++ ...+......+..
T Consensus 116 ~~--~-----~~-----~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~ 177 (297)
T 2ojh_A 116 PS--T-----GG-----TPRLMTKNL--PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV----ETRLTHGEGRNDG 177 (297)
T ss_dssp ET--T-----CC-----CCEECCSSS--SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC----EEECCCSSSCEEE
T ss_pred EC--C-----CC-----ceEEeecCC--CccceEECCCCCEEEEEECCCCceEEEEEECCCCc----ceEcccCCCcccc
Confidence 76 3 23 455665554 36668999999999988877677789999998777 4777777677788
Q ss_pred eeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccC
Q 039497 489 PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAE 568 (642)
Q Consensus 489 ~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~ 568 (642)
+.|+|||++|++..... +...||.+++.++....+... .. .+..+.|+|||++|++.+.++....
T Consensus 178 ~~~s~dg~~l~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~--~~-------~~~~~~~s~dg~~l~~~~~~~~~~~- 242 (297)
T 2ojh_A 178 PDYSPDGRWIYFNSSRT-----GQMQIWRVRVDGSSVERITDS--AY-------GDWFPHPSPSGDKVVFVSYDADVFD- 242 (297)
T ss_dssp EEECTTSSEEEEEECTT-----SSCEEEEEETTSSCEEECCCC--SE-------EEEEEEECTTSSEEEEEEEETTCCS-
T ss_pred ceECCCCCEEEEEecCC-----CCccEEEECCCCCCcEEEecC--Cc-------ccCCeEECCCCCEEEEEEcCCCCCc-
Confidence 99999999999987643 456788888888777666532 22 4567899999999999987643100
Q ss_pred CCCCCCCCCCCCcEEEEEcCCCceeecc---CCCCCCCCcEEecCCceEEeecC
Q 039497 569 PVSWPNQFQPYGDLYVVKLDGSGLRRLT---WNGYENGTPAWHPGNQLDLGKLR 619 (642)
Q Consensus 569 ~~~~~~~~~~~~~l~~~~~~~~~~~~lt---~~~~~~~~~~~s~dg~~~~~~~~ 619 (642)
..+.....|++|++.+++...+. .+...+..++|+|||++++...+
T Consensus 243 -----~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 243 -----HPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp -----CCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred -----ccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEe
Confidence 00000137999999988766555 34556788999999998865543
No 36
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=1.9e-19 Score=196.94 Aligned_cols=280 Identities=15% Similarity=0.088 Sum_probs=184.5
Q ss_pred cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC---CcceEeeCCeEEEEEec--CCCceE
Q 039497 142 DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG---GWPTWSGDSTIYFHRQA--DDGWWS 216 (642)
Q Consensus 142 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~wspdg~~~~~~~~--~~g~~~ 216 (642)
....+|||||++|||.+... +...|| .+++++.++++.... ..++|||| +++|+... .+..+.
T Consensus 24 ~~~~~~~~DG~~la~~s~~~---------g~~~lw--~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~ 91 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFSE---------GSVNAY--LYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHA 91 (582)
T ss_dssp EEEEEEEETTTEEEEEEEET---------TEEEEE--EEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEE
T ss_pred hheeecCCCCCeEEEEEccC---------CceeEE--EEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceE
Confidence 34578999999999987633 344554 468888888887553 35799999 88888743 234579
Q ss_pred EEEEec--CCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCC
Q 039497 217 IFRVSF--PENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSE 294 (642)
Q Consensus 217 l~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~ 294 (642)
||.++. .++ . .+++.... ....+|||||+.++++....+ .+.+||+..+.
T Consensus 92 l~~~~~~~~g~--------~-~~l~~~~~-~~~~~~s~dg~~~~~~s~~~~----~~~l~d~~~g~-------------- 143 (582)
T 3o4h_A 92 LFKVNTSRPGE--------E-QRLEAVKP-MRILSGVDTGEAVVFTGATED----RVALYALDGGG-------------- 143 (582)
T ss_dssp EEEEETTSTTC--------C-EECTTSCS-BEEEEEEECSSCEEEEEECSS----CEEEEEEETTE--------------
T ss_pred EEEEeccCCCc--------c-ccccCCCC-ceeeeeCCCCCeEEEEecCCC----CceEEEccCCc--------------
Confidence 999998 554 2 35554432 335689999998888654432 33366652110
Q ss_pred EEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecC-CCceeEEEEECCCCCeeEEee-c
Q 039497 295 FIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDF-ELNAGIKIAKSDGSKRWTLIK-D 372 (642)
Q Consensus 295 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-~~~~~l~~~d~~~~~~~~l~~-~ 372 (642)
.. .+.......+.|||||++|++.... .+...||++|+++++.++++. .
T Consensus 144 ---------------------------~~--~l~~~~~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~ 194 (582)
T 3o4h_A 144 ---------------------------LR--ELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGE 194 (582)
T ss_dssp ---------------------------EE--EEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSS
T ss_pred ---------------------------EE--EeecCCCceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCC
Confidence 00 0111122467899999999987653 333679999999999888765 4
Q ss_pred CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcE--------EC
Q 039497 373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPS--------CS 444 (642)
Q Consensus 373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~S 444 (642)
..+..+.|||||+.|+.... ++...|+.++. + ++ ..+.+.... ..+..+. ||
T Consensus 195 ~~~~~~~~SpDG~~l~~~~~-------~~~~~i~~~d~--~-----~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~s 254 (582)
T 3o4h_A 195 GSFSSASISPGMKVTAGLET-------AREARLVTVDP--R-----DG-----SVEDLELPS-KDFSSYRPTAITWLGYL 254 (582)
T ss_dssp CEEEEEEECTTSCEEEEEEC-------SSCEEEEEECT--T-----TC-----CEEECCCSC-SHHHHHCCSEEEEEEEC
T ss_pred CccccceECCCCCEEEEccC-------CCeeEEEEEcC--C-----CC-----cEEEccCCC-cChhhhhhccccceeEc
Confidence 55789999999999994332 44345555554 2 33 344444433 5566677 99
Q ss_pred CCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc
Q 039497 445 PDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG 524 (642)
Q Consensus 445 pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~ 524 (642)
||| .+++....++. +.+|++ |+. ... ....+..++|| ||+.++..+... ...+||++++++ +
T Consensus 255 pdg-~~~~~~~~~g~--~~l~~~--g~~----~~~--~~~~v~~~~~s-dg~~l~~~s~~~-----~p~~l~~~d~~~-~ 316 (582)
T 3o4h_A 255 PDG-RLAVVARREGR--SAVFID--GER----VEA--PQGNHGRVVLW-RGKLVTSHTSLS-----TPPRIVSLPSGE-P 316 (582)
T ss_dssp TTS-CEEEEEEETTE--EEEEET--TEE----ECC--CSSEEEEEEEE-TTEEEEEEEETT-----EEEEEEEETTCC-E
T ss_pred CCC-cEEEEEEcCCc--EEEEEE--CCe----ecc--CCCceEEEEec-CCEEEEEEcCCC-----CCCeEEEEcCCC-c
Confidence 999 77777766664 455555 663 322 22456678999 998776666554 567899999876 5
Q ss_pred eEEe
Q 039497 525 LRRI 528 (642)
Q Consensus 525 ~~~l 528 (642)
.+++
T Consensus 317 ~~~l 320 (582)
T 3o4h_A 317 LLEG 320 (582)
T ss_dssp EECC
T ss_pred eEEE
Confidence 4444
No 37
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.84 E-value=5.3e-18 Score=188.46 Aligned_cols=298 Identities=13% Similarity=0.141 Sum_probs=193.9
Q ss_pred cceEEEEeec-CCceeeeEEEecCCCCCCCCCceeeecCCceeee---------ecee--cCCCCCe-EEEEEccCCCcc
Q 039497 4 KGTIVFTTVG-RPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINF---------NAQF--VDGQDQT-IAFISERSGSPR 70 (642)
Q Consensus 4 ~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~---------~~~~--S~pDG~~-laf~~~~~g~~~ 70 (642)
++.|+|+... .......||.+ ..+ +..++||.+..... .++| | |||++ |||++.+ ..+
T Consensus 33 ~~~~~~~~~~~~~~~~~~l~~~-~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~S-PDg~~~la~~~~~--~~~ 103 (662)
T 3azo_A 33 GDEVWWVAPRPAEAGRATLVRR-RAD-----GAEESALPAPWNVRNRVFEYSGFPWAGVPR-PAGGPLLVFTHFG--DQR 103 (662)
T ss_dssp TTEEEEEEEETTTTTEEEEEEE-CTT-----SCEEESSCTTCCBCCCGGGTCCCCEEEECC-SSSSCEEEEEBTT--TCC
T ss_pred CCeEEEEecCcccCCcEEEEEE-CCC-----CCcceeCCCCccccccccccCCccceeeee-cCCCeEEEEEECC--CCe
Confidence 5678888542 11224689998 555 88999998875544 4444 6 99999 9998754 578
Q ss_pred eEEEcCC--C-CcccccCCCC---CCcccccccc--CCCEEEEEEeccCCCcccccccceEEEEccC------CceEecc
Q 039497 71 IYQTRPG--S-SKTELLPSIP---CSLFHDRPVA--RNNKLFFISAHEQPDQIFKSWSALYSTDLKA------SKFTRLT 136 (642)
Q Consensus 71 l~~~~~~--g-~~~~~~~~~~---~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~lt 136 (642)
||.++.+ | .....+.... +......+++ +|+.|+|.+.............+||++++.+ ++.++|+
T Consensus 104 l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 183 (662)
T 3azo_A 104 LYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELS 183 (662)
T ss_dssp EEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESS
T ss_pred EEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEE
Confidence 9999766 3 3344444321 1111123333 7888998886521100111123799999999 8889998
Q ss_pred -cCCCccCCceeCCCCcEEEEEecCCC--CCCCCCCCCeeeEEEEEec-CC---CceeEeecCC---CcceEeeCCeEEE
Q 039497 137 -PYGVVDYSPSVSYSGKFIAVASYESR--PWPGEFHELNTDIVVFQES-DP---NKRVIVCERG---GWPTWSGDSTIYF 206 (642)
Q Consensus 137 -~~~~~~~~~~~SPDG~~la~~~~~~~--~~~~~~~~~~~~l~~~~~~-~g---~~~~l~~~~~---~~~~wspdg~~~~ 206 (642)
.+......|+|||||++|||.+.... .| ...+||+++++ +| +.++++.... ..+.|+|||+++|
T Consensus 184 ~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~------~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~ 257 (662)
T 3azo_A 184 DDAHRFVTGPRLSPDGRQAVWLAWDHPRMPW------EGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIV 257 (662)
T ss_dssp CSCSSEECCCEECTTSSEEEEEEECTTCCTT------TCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEE
T ss_pred ecCCCcccCceECCCCCEEEEEECCCCCCCC------CCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEE
Confidence 76666788999999999999875431 11 24689999999 57 5666665432 3579999999777
Q ss_pred EEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccC
Q 039497 207 HRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYN 286 (642)
Q Consensus 207 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 286 (642)
+. ..++.++||++++.++ ..++++........+.|+++..
T Consensus 258 ~~-~~~~~~~l~~~~~~~~--------~~~~l~~~~~~~~~p~w~~~~~------------------------------- 297 (662)
T 3azo_A 258 AT-DRTGWWNLHRVDPATG--------AATQLCRREEEFAGPLWTPGMR------------------------------- 297 (662)
T ss_dssp EE-CTTSSCEEEEECTTTC--------CEEESSCCSSBSSCCCCSTTCC-------------------------------
T ss_pred EE-CCCCCeEEEEEECCCC--------ceeecccccccccCccccccCc-------------------------------
Confidence 77 5567889999998776 5566655433333333333221
Q ss_pred CeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCe
Q 039497 287 PFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR 366 (642)
Q Consensus 287 ~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~ 366 (642)
.+.|+|+++ ++|.... +...||++++++++.
T Consensus 298 -----------------------------------------------~~~~~~~~~-~~~~~~~-~~~~l~~~d~~~~~~ 328 (662)
T 3azo_A 298 -----------------------------------------------WFAPLANGL-IAVVHGK-GAAVLGILDPESGEL 328 (662)
T ss_dssp -----------------------------------------------SEEECTTSC-EEEEEBS-SSCEEEEEETTTTEE
T ss_pred -----------------------------------------------eEeEeCCCE-EEEEEEc-CccEEEEEECCCCcE
Confidence 225677776 4444444 678899999888876
Q ss_pred eEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 367 WTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 367 ~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
+.+..........|+++++.+++.... ......+|.++.
T Consensus 329 ~~l~~~~~~~~~~~s~~~~~~~~~~~~-----~~~~~~i~~~d~ 367 (662)
T 3azo_A 329 VDAAGPWTEWAATLTVSGTRAVGVAAS-----PRTAYEVVELDT 367 (662)
T ss_dssp EECCSSCCEEEEEEEEETTEEEEEEEE-----TTEEEEEEEEET
T ss_pred EEecCCCCeEEEEEecCCCEEEEEEcC-----CCCCCEEEEEEC
Confidence 666543222222348889988887642 355667888876
No 38
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.83 E-value=7.1e-18 Score=170.22 Aligned_cols=319 Identities=13% Similarity=0.059 Sum_probs=191.9
Q ss_pred ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEE
Q 039497 196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD 275 (642)
Q Consensus 196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d 275 (642)
+.|.+++..+|+....++ .|..++..+++ ....+..+.... .++|+|||++|+++....+ .+++||
T Consensus 3 ~~~~~~~~~~~v~~~~~~--~v~~~d~~~~~-------~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~----~i~~~d 68 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLR--RISFFSTDTLE-------ILNQITLGYDFV-DTAITSDCSNVVVTSDFCQ----TLVQIE 68 (331)
T ss_dssp ----CCCCEEEEEEGGGT--EEEEEETTTCC-------EEEEEECCCCEE-EEEECSSSCEEEEEESTTC----EEEEEE
T ss_pred eeEcCCCCEEEEEecCCC--eEEEEeCcccc-------eeeeEEccCCcc-eEEEcCCCCEEEEEeCCCC----eEEEEE
Confidence 456677766555544455 77788888773 223333333334 7889999998887654322 777777
Q ss_pred eecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCc-cEEcCCCCEEEEEecCC-Cc
Q 039497 276 LTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSF-PSFSPDGGLIVFNHDFE-LN 353 (642)
Q Consensus 276 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~spdg~~l~~~~~~~-~~ 353 (642)
+.... .+. . .+. ....... +.|+|||++|+ +.... +.
T Consensus 69 ~~~~~--------------~~~----------------~---------~~~-~~~~~~~~~~~s~dg~~l~-~~~~~~~~ 107 (331)
T 3u4y_A 69 TQLEP--------------PKV----------------V---------AIQ-EGQSSMADVDITPDDQFAV-TVTGLNHP 107 (331)
T ss_dssp CSSSS--------------CEE----------------E---------EEE-ECSSCCCCEEECTTSSEEE-ECCCSSSS
T ss_pred CCCCc--------------eeE----------------E---------ecc-cCCCCccceEECCCCCEEE-EecCCCCc
Confidence 62211 000 0 000 0111234 68999999888 44322 22
Q ss_pred eeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCe-EEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497 354 AGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERAT-VQIARVSFQLDPSDDNNREEIPCDVKILT 431 (642)
Q Consensus 354 ~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 431 (642)
..|+++++++++...... ......+.|+|||++|+++.. .... +.+|+++. + +.........+.
T Consensus 108 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~------~~~~~i~~~~~~~--~------g~~~~~~~~~~~ 173 (331)
T 3u4y_A 108 FNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDR------SSANTVRRFKIDA--D------GVLFDTGQEFIS 173 (331)
T ss_dssp CEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEE------TTTTEEEEEEECT--T------CCEEEEEEEEEC
T ss_pred ccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEec------CCCceEEEEEECC--C------CcEeecCCcccc
Confidence 389999999887655544 555688999999998888764 2456 88999865 2 211000112222
Q ss_pred ccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCC
Q 039497 432 KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVE 511 (642)
Q Consensus 432 ~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~ 511 (642)
.. .....+.|+|||++|++....+ ..|++||+.+++....+..+.. ......++|+|||++|++....
T Consensus 174 -~~-~~~~~~~~spdg~~l~v~~~~~--~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~------- 241 (331)
T 3u4y_A 174 -GG-TRPFNITFTPDGNFAFVANLIG--NSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTES------- 241 (331)
T ss_dssp -SS-SSEEEEEECTTSSEEEEEETTT--TEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSS-------
T ss_pred -CC-CCccceEECCCCCEEEEEeCCC--CeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcC-------
Confidence 22 3466789999999998887543 4799999988773000123332 2445678999999988877653
Q ss_pred ceeEEEEeCCCCceEEeeecCCCC-CCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497 512 AFSLYVIKPDGSGLRRIHVAGPEG-SGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590 (642)
Q Consensus 512 ~~~l~~~d~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 590 (642)
...|+++|+.+++.+.+....... ...........++|||||++|+++....+ .|.+|++.+.
T Consensus 242 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~----------------~v~v~d~~~~ 305 (331)
T 3u4y_A 242 TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISR----------------ELKVFTISGK 305 (331)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTT----------------EEEEEETTSC
T ss_pred CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCC----------------cEEEEEecCC
Confidence 234999999988775543321110 00000011234799999999988876543 7899999887
Q ss_pred ceeeccCCCCCCCCcEEecCC
Q 039497 591 GLRRLTWNGYENGTPAWHPGN 611 (642)
Q Consensus 591 ~~~~lt~~~~~~~~~~~s~dg 611 (642)
....+...........++||+
T Consensus 306 ~~~~~~~~~~~g~~~~~~~~~ 326 (331)
T 3u4y_A 306 VVGYVAGIEANGGIAICHPDK 326 (331)
T ss_dssp EEEECTTCCCBSCEEECCCC-
T ss_pred cccceecccccCCeEEECCcc
Confidence 766655433222233445554
No 39
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=2.3e-19 Score=196.29 Aligned_cols=278 Identities=14% Similarity=0.084 Sum_probs=184.9
Q ss_pred ccccceeecCCcEEEEEEeccCCceeeEEEEEee-------cCCC-CcccCCeecCCCCEEEEEEee-cCCCCCCcccce
Q 039497 244 HCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT-------LNPN-FHHYNPFVSANSEFIGYHRFR-GESTEGQSTIPH 314 (642)
Q Consensus 244 ~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~-------~~~~-~~~~~~~~spDg~~l~~~~~~-~~~~~~~~~~~~ 314 (642)
.+..+++||||++|+|+..+.+ .+.+|++. +... ..+..++|||| +++|.... +.. ....+|
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g----~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~---~~~~l~ 93 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEG----SVNAYLYDGGETVKLNREPINSVLDPHYGVG--RVILVRDVSKGA---EQHALF 93 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETT----EEEEEEEETTEEEECCSSCCSEECEECTTCS--EEEEEEECSTTS---CCEEEE
T ss_pred chheeecCCCCCeEEEEEccCC----ceeEEEEcCCCcEeeecccccccccccCCCC--eEEEEeccCCCC---cceEEE
Confidence 4667889999999999876443 56777772 1222 35677899999 56676553 221 113455
Q ss_pred Eeec--cCCCceeEEeee-CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEE
Q 039497 315 LEPV--ASPVKELRMLRL-NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTS 391 (642)
Q Consensus 315 ~~~~--~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~ 391 (642)
.... .+.... +... ......|+|||+.++|++...+ .+.++|+++++.++++.... ..+.|||||++|++.+
T Consensus 94 ~~~~~~~g~~~~--l~~~~~~~~~~~s~dg~~~~~~s~~~~--~~~l~d~~~g~~~~l~~~~~-~~~~~spDG~~la~~~ 168 (582)
T 3o4h_A 94 KVNTSRPGEEQR--LEAVKPMRILSGVDTGEAVVFTGATED--RVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLG 168 (582)
T ss_dssp EEETTSTTCCEE--CTTSCSBEEEEEEECSSCEEEEEECSS--CEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEE
T ss_pred EEeccCCCcccc--ccCCCCceeeeeCCCCCeEEEEecCCC--CceEEEccCCcEEEeecCCC-ceEEECCCCCEEEEEE
Confidence 5555 433222 2111 1134589999999888765433 34466888888777776333 8899999999999887
Q ss_pred cCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCc
Q 039497 392 TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE 471 (642)
Q Consensus 392 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~ 471 (642)
.. ......||.++. + ++ ..+.|+... .....++|||||++|+ .+.+++..+||+||+++|+
T Consensus 169 ~~-----~~~~~~i~~~d~--~-----~g-----~~~~l~~~~-~~~~~~~~SpDG~~l~-~~~~~~~~~i~~~d~~~~~ 229 (582)
T 3o4h_A 169 FF-----GGGRVSLFTSNL--S-----SG-----GLRVFDSGE-GSFSSASISPGMKVTA-GLETAREARLVTVDPRDGS 229 (582)
T ss_dssp EE-----ETTEEEEEEEET--T-----TC-----CCEEECCSS-CEEEEEEECTTSCEEE-EEECSSCEEEEEECTTTCC
T ss_pred Ec-----CCCCeEEEEEcC--C-----CC-----CceEeecCC-CccccceECCCCCEEE-EccCCCeeEEEEEcCCCCc
Confidence 52 122344666665 2 34 566777666 6678899999999999 5556666799999999888
Q ss_pred cccceeeCCCCCCccccee--------EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCccccc
Q 039497 472 FNGDIRQLTDGPWIDTMPS--------WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRER 543 (642)
Q Consensus 472 ~~~~~~~l~~~~~~~~~~~--------~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 543 (642)
. +.+......+..+. ||||| .+++...... .+.+|++ ++... + ..+ .
T Consensus 230 ~----~~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g-------~~~l~~~--g~~~~-~---~~~-------~ 284 (582)
T 3o4h_A 230 V----EDLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREG-------RSAVFID--GERVE-A---PQG-------N 284 (582)
T ss_dssp E----EECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETT-------EEEEEET--TEEEC-C---CSS-------E
T ss_pred E----EEccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCC-------cEEEEEE--CCeec-c---CCC-------c
Confidence 5 55555555666677 99999 5666655432 2666676 44332 1 122 4
Q ss_pred ccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeec
Q 039497 544 INHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL 595 (642)
Q Consensus 544 ~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 595 (642)
+..++|| ||+.++..+..... ..||.++.++ +.++|
T Consensus 285 v~~~~~s-dg~~l~~~s~~~~p--------------~~l~~~d~~~-~~~~l 320 (582)
T 3o4h_A 285 HGRVVLW-RGKLVTSHTSLSTP--------------PRIVSLPSGE-PLLEG 320 (582)
T ss_dssp EEEEEEE-TTEEEEEEEETTEE--------------EEEEEETTCC-EEECC
T ss_pred eEEEEec-CCEEEEEEcCCCCC--------------CeEEEEcCCC-ceEEE
Confidence 5688999 99888766665432 3899998876 55555
No 40
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.83 E-value=3.5e-18 Score=171.75 Aligned_cols=266 Identities=10% Similarity=0.100 Sum_probs=187.1
Q ss_pred eCCCCCccccceeecC----CcEEEEEEeccCCceeeEEEEEee----------cCCCCcccCCeecCCCCEEEEEEeec
Q 039497 238 VTPPGVHCFTPAAFHD----GKRLAVATRRKNRNFRHIEIYDLT----------LNPNFHHYNPFVSANSEFIGYHRFRG 303 (642)
Q Consensus 238 l~~~~~~~~~~~~Spd----G~~l~~~~~~~~~~~~~i~~~d~~----------~~~~~~~~~~~~spDg~~l~~~~~~~ 303 (642)
+..+...+..++|+|+ ++.|+....++ .+++|++. .++...+....|++++..++....++
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~-----~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDD-----LVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTS-----CEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCC-----CEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 3455557788888875 56777755444 78898872 34555667788999999888765544
Q ss_pred CCCCCCcccceEeeccCCCceeEEee---eCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceee
Q 039497 304 ESTEGQSTIPHLEPVASPVKELRMLR---LNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYN 378 (642)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~ 378 (642)
. ..+| .+.... .+.... .....+.|+|||++|+.... ...|.++++..++...... ...+..+
T Consensus 103 ~------i~lW--d~~~~~-~~~~~~~~~~~~~~~~~spdg~~l~~g~~---dg~v~i~~~~~~~~~~~~~~~~~~v~~~ 170 (321)
T 3ow8_A 103 H------IRLW--DLENGK-QIKSIDAGPVDAWTLAFSPDSQYLATGTH---VGKVNIFGVESGKKEYSLDTRGKFILSI 170 (321)
T ss_dssp E------EEEE--ETTTTE-EEEEEECCTTCCCCEEECTTSSEEEEECT---TSEEEEEETTTCSEEEEEECSSSCEEEE
T ss_pred c------EEEE--ECCCCC-EEEEEeCCCccEEEEEECCCCCEEEEEcC---CCcEEEEEcCCCceeEEecCCCceEEEE
Confidence 3 2333 332221 111111 12245789999998887643 4678888998877554433 4567889
Q ss_pred eeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCC
Q 039497 379 SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG 458 (642)
Q Consensus 379 ~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g 458 (642)
.|+|||+.|+..+. ++.+++|++.. +. ....+..+. ..+..+.|+|||++|+..+.
T Consensus 171 ~~spdg~~lasg~~-------dg~i~iwd~~~--------~~-----~~~~~~~h~-~~v~~l~~spd~~~l~s~s~--- 226 (321)
T 3ow8_A 171 AYSPDGKYLASGAI-------DGIINIFDIAT--------GK-----LLHTLEGHA-MPIRSLTFSPDSQLLVTASD--- 226 (321)
T ss_dssp EECTTSSEEEEEET-------TSCEEEEETTT--------TE-----EEEEECCCS-SCCCEEEECTTSCEEEEECT---
T ss_pred EECCCCCEEEEEcC-------CCeEEEEECCC--------Cc-----EEEEEcccC-CceeEEEEcCCCCEEEEEcC---
Confidence 99999999998874 67899998854 22 445555554 67788999999998887764
Q ss_pred ceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCC
Q 039497 459 HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGD 538 (642)
Q Consensus 459 ~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 538 (642)
+..|.+||+.+++. ...+..+...+..++|+|||++|+..+.++. |.+||+.+++...... ++..
T Consensus 227 dg~i~iwd~~~~~~---~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~--------v~iwd~~~~~~~~~~~-~h~~--- 291 (321)
T 3ow8_A 227 DGYIKIYDVQHANL---AGTLSGHASWVLNVAFCPDDTHFVSSSSDKS--------VKVWDVGTRTCVHTFF-DHQD--- 291 (321)
T ss_dssp TSCEEEEETTTCCE---EEEECCCSSCEEEEEECTTSSEEEEEETTSC--------EEEEETTTTEEEEEEC-CCSS---
T ss_pred CCeEEEEECCCcce---eEEEcCCCCceEEEEECCCCCEEEEEeCCCc--------EEEEeCCCCEEEEEEc-CCCC---
Confidence 33799999998876 5667777777888999999999998887765 9999998776544332 3444
Q ss_pred cccccccceEEcCCCCEEEEEEecC
Q 039497 539 VDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 539 ~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
.+..+.|+|||+.|+..+.++
T Consensus 292 ----~v~~v~~s~~g~~l~s~~~d~ 312 (321)
T 3ow8_A 292 ----QVWGVKYNGNGSKIVSVGDDQ 312 (321)
T ss_dssp ----CEEEEEECTTSSEEEEEETTC
T ss_pred ----cEEEEEECCCCCEEEEEeCCC
Confidence 678899999999998777654
No 41
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.83 E-value=1.8e-17 Score=171.39 Aligned_cols=268 Identities=13% Similarity=0.101 Sum_probs=180.3
Q ss_pred eeEEEEEecCCCceeEeecCC--CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCcccccee
Q 039497 173 TDIVVFQESDPNKRVIVCERG--GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAA 250 (642)
Q Consensus 173 ~~l~~~~~~~g~~~~l~~~~~--~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 250 (642)
..|++|++.+++..+...... ..++|+|||+.+++....++ .|+.++..+++ ....+..+. .+..++|
T Consensus 12 ~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~--~i~v~d~~~~~-------~~~~~~~~~-~v~~~~~ 81 (391)
T 1l0q_A 12 DNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSN--DVSIIDTATNN-------VIATVPAGS-SPQGVAV 81 (391)
T ss_dssp TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGT--EEEEEETTTTE-------EEEEEECSS-SEEEEEE
T ss_pred CEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCC--eEEEEECCCCe-------EEEEEECCC-CccceEE
Confidence 379999999887666554333 24699999976655434456 67778887773 233333333 6778899
Q ss_pred ecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeee
Q 039497 251 FHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRL 330 (642)
Q Consensus 251 SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (642)
+|||++|+++.... ..|++||+... +.+... ... .
T Consensus 82 spdg~~l~~~~~~~----~~v~v~d~~~~--------------~~~~~~-----------------~~~----------~ 116 (391)
T 1l0q_A 82 SPDGKQVYVTNMAS----STLSVIDTTSN--------------TVAGTV-----------------KTG----------K 116 (391)
T ss_dssp CTTSSEEEEEETTT----TEEEEEETTTT--------------EEEEEE-----------------ECS----------S
T ss_pred CCCCCEEEEEECCC----CEEEEEECCCC--------------eEEEEE-----------------eCC----------C
Confidence 99999998865432 37888887221 111111 000 0
Q ss_pred CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVS 409 (642)
Q Consensus 331 ~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~ 409 (642)
....+.|+|||++|++... ....|+++|+.+++...... ...+..+.|+|||+.|+++.. .++.+.+|++.
T Consensus 117 ~~~~~~~s~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~------~~~~v~~~d~~ 188 (391)
T 1l0q_A 117 SPLGLALSPDGKKLYVTNN--GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANF------DSMSISVIDTV 188 (391)
T ss_dssp SEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEET------TTTEEEEEETT
T ss_pred CcceEEECCCCCEEEEEeC--CCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeC------CCCEEEEEECC
Confidence 1124589999998877653 34689999998887655544 556788999999999987763 36778888774
Q ss_pred eecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccce
Q 039497 410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489 (642)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~ 489 (642)
. + ......... .....+.|+|||++|+..........|++||+.+++. +..+..+ .....+
T Consensus 189 ~---------~-----~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~---~~~~~~~-~~~~~~ 249 (391)
T 1l0q_A 189 T---------N-----SVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI---TARIPVG-PDPAGI 249 (391)
T ss_dssp T---------T-----EEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE---EEEEECC-SSEEEE
T ss_pred C---------C-----eEEEEEecC-CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE---EEEEecC-CCccEE
Confidence 4 2 222222223 4567789999999999887533455899999998875 4444443 345678
Q ss_pred eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEee
Q 039497 490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH 529 (642)
Q Consensus 490 ~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 529 (642)
.|+|||++|++.....+ .|++||+.+++.....
T Consensus 250 ~~s~dg~~l~~s~~~d~-------~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 250 AVTPDGKKVYVALSFXN-------TVSVIDTATNTITATM 282 (391)
T ss_dssp EECTTSSEEEEEETTTT-------EEEEEETTTTEEEEEE
T ss_pred EEccCCCEEEEEcCCCC-------EEEEEECCCCcEEEEE
Confidence 99999999987765432 4999999987765443
No 42
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.6e-17 Score=169.90 Aligned_cols=304 Identities=14% Similarity=0.078 Sum_probs=206.7
Q ss_pred eEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---cceEeeCCeEEEEE
Q 039497 132 FTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---WPTWSGDSTIYFHR 208 (642)
Q Consensus 132 ~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---~~~wspdg~~~~~~ 208 (642)
...|..+.......+|||||++||....++ .|.+|++.+++.......+.. .++|+|++.++++.
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg------------~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 92 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDS------------SASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTG 92 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSS------------CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCC------------EEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEE
Confidence 445666666677889999999999887655 799999998886665543332 45999999888777
Q ss_pred ecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCe
Q 039497 209 QADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPF 288 (642)
Q Consensus 209 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 288 (642)
..+| .|..+++.++. ....+. ....+..++|+|+|++|+............+.+||+........
T Consensus 93 -~~dg--~i~iwd~~~~~-------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~---- 157 (369)
T 3zwl_B 93 -SADY--SIKLWDVSNGQ-------CVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHE---- 157 (369)
T ss_dssp -ETTT--EEEEEETTTCC-------EEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCC----
T ss_pred -eCCC--eEEEEECCCCc-------EEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCcccee----
Confidence 4567 55556666662 223333 55567789999999999987665333345899999844321110
Q ss_pred ecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeee--CCCccEEcCCCCEEEEEecCCCceeEEEEECCC-CC
Q 039497 289 VSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRL--NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG-SK 365 (642)
Q Consensus 289 ~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~-~~ 365 (642)
+... ... ....+..... ....+.|+|+|+.|+.... ...|.++|+.. .+
T Consensus 158 -------~~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~ 209 (369)
T 3zwl_B 158 -------LTKV--SEE----------------PIHKIITHEGLDAATVAGWSTKGKYIIAGHK---DGKISKYDVSNNYE 209 (369)
T ss_dssp -------EEEE--CSS----------------CSEEEECCTTCCCEEEEEECGGGCEEEEEET---TSEEEEEETTTTTE
T ss_pred -------eccc--ccc----------------eeeeccCCcCccceeEEEEcCCCCEEEEEcC---CCEEEEEECCCCcE
Confidence 0000 000 0000000000 1134589999998887654 36789999987 34
Q ss_pred eeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEE
Q 039497 366 RWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSC 443 (642)
Q Consensus 366 ~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 443 (642)
...... ...+..+.|+|+++.|+..+. ++.+.+|++.. +. ....+. .. .....+.|
T Consensus 210 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------d~~i~v~d~~~--------~~-----~~~~~~-~~-~~~~~~~~ 267 (369)
T 3zwl_B 210 YVDSIDLHEKSISDMQFSPDLTYFITSSR-------DTNSFLVDVST--------LQ-----VLKKYE-TD-CPLNTAVI 267 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEET-------TSEEEEEETTT--------CC-----EEEEEE-CS-SCEEEEEE
T ss_pred eEEEEecCCCceeEEEECCCCCEEEEecC-------CceEEEEECCC--------Cc-----eeeeec-CC-CCceeEEe
Confidence 333322 567889999999999988874 67899998754 22 333333 33 56778999
Q ss_pred CCCCCeEEEEeCCC-----------CceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCc
Q 039497 444 SPDGKFLVFRSGRS-----------GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA 512 (642)
Q Consensus 444 SpDg~~l~~~~~~~-----------g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~ 512 (642)
+|+++++++..... +...+.+||..+++. +..+..+...+..++|+|||++|+..+.++.
T Consensus 268 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~------ 338 (369)
T 3zwl_B 268 TPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE---IGRVQGHFGPLNTVAISPQGTSYASGGEDGF------ 338 (369)
T ss_dssp CSSSSEEEEEECCC-------------CEEEEEETTTCCE---EEEEECCSSCEEEEEECTTSSEEEEEETTSE------
T ss_pred cCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc---hhheecccCcEEEEEECCCCCEEEEEcCCCe------
Confidence 99999999887543 122789999998886 6667767777888999999999988887654
Q ss_pred eeEEEEeCCCC
Q 039497 513 FSLYVIKPDGS 523 (642)
Q Consensus 513 ~~l~~~d~~~~ 523 (642)
|.+|+++.+
T Consensus 339 --v~iw~~~~~ 347 (369)
T 3zwl_B 339 --IRLHHFEKS 347 (369)
T ss_dssp --EEEEEECHH
T ss_pred --EEEEECccc
Confidence 889988754
No 43
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.82 E-value=9.1e-18 Score=168.70 Aligned_cols=275 Identities=12% Similarity=0.046 Sum_probs=191.0
Q ss_pred cCCCCcccCCeecCC----CCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeee--CCCccEEcCCCCEEEEEecCC
Q 039497 278 LNPNFHHYNPFVSAN----SEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRL--NGSFPSFSPDGGLIVFNHDFE 351 (642)
Q Consensus 278 ~~~~~~~~~~~~spD----g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~ 351 (642)
..+...+...+|+|+ ++.|+....++. ..+|-...........+... ......|++++..++..+.
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~------v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~-- 100 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDL------VKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL-- 100 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSC------EEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET--
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCC------EEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC--
Confidence 445556667788875 456666554443 44453321110000011111 1135688999998777654
Q ss_pred CceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE
Q 039497 352 LNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI 429 (642)
Q Consensus 352 ~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 429 (642)
...|.++|+.+++...... ...+..+.|+||++.|+.... ++.+.+|++.. +. ....
T Consensus 101 -D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~-------dg~v~i~~~~~--------~~-----~~~~ 159 (321)
T 3ow8_A 101 -DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTH-------VGKVNIFGVES--------GK-----KEYS 159 (321)
T ss_dssp -TSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECT-------TSEEEEEETTT--------CS-----EEEE
T ss_pred -CCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcC-------CCcEEEEEcCC--------Cc-----eeEE
Confidence 3678889998876544433 445778999999999988763 67899998855 22 3444
Q ss_pred ccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCC
Q 039497 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDN 509 (642)
Q Consensus 430 l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~ 509 (642)
+.... ..+..++|+|||++|+..+.+ ..|.+||+.+++. +..+..+...+..++|+|||++|+..+.++.
T Consensus 160 ~~~~~-~~v~~~~~spdg~~lasg~~d---g~i~iwd~~~~~~---~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~--- 229 (321)
T 3ow8_A 160 LDTRG-KFILSIAYSPDGKYLASGAID---GIINIFDIATGKL---LHTLEGHAMPIRSLTFSPDSQLLVTASDDGY--- 229 (321)
T ss_dssp EECSS-SCEEEEEECTTSSEEEEEETT---SCEEEEETTTTEE---EEEECCCSSCCCEEEECTTSCEEEEECTTSC---
T ss_pred ecCCC-ceEEEEEECCCCCEEEEEcCC---CeEEEEECCCCcE---EEEEcccCCceeEEEEcCCCCEEEEEcCCCe---
Confidence 44444 567789999999999987743 4799999999886 6677777777889999999999988877665
Q ss_pred CCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC
Q 039497 510 VEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589 (642)
Q Consensus 510 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 589 (642)
|.+||+..++...... ++.. .+..++|+|||++|+..+.++ .|.+|++..
T Consensus 230 -----i~iwd~~~~~~~~~~~-~h~~-------~v~~~~~sp~~~~l~s~s~D~-----------------~v~iwd~~~ 279 (321)
T 3ow8_A 230 -----IKIYDVQHANLAGTLS-GHAS-------WVLNVAFCPDDTHFVSSSSDK-----------------SVKVWDVGT 279 (321)
T ss_dssp -----EEEEETTTCCEEEEEC-CCSS-------CEEEEEECTTSSEEEEEETTS-----------------CEEEEETTT
T ss_pred -----EEEEECCCcceeEEEc-CCCC-------ceEEEEECCCCCEEEEEeCCC-----------------cEEEEeCCC
Confidence 9999998776654332 3444 578899999999988877654 688889887
Q ss_pred Cc-eeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497 590 SG-LRRLTWNGYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 590 ~~-~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
+. +..+..+...+..++|+|||++|++....+
T Consensus 280 ~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~ 312 (321)
T 3ow8_A 280 RTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQ 312 (321)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 65 455666667778999999999998766544
No 44
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.82 E-value=1e-17 Score=186.16 Aligned_cols=312 Identities=13% Similarity=0.078 Sum_probs=197.8
Q ss_pred ecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC-----------cceEe--e
Q 039497 134 RLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG-----------WPTWS--G 200 (642)
Q Consensus 134 ~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~-----------~~~ws--p 200 (642)
.+..+......|++|+| +++|+..+.. ..+...||.+ ..+++.++++..... .+.|+ |
T Consensus 18 ~~~~~~~~~~~~~~s~~--~~~~~~~~~~------~~~~~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SP 88 (662)
T 3azo_A 18 LVASRSGRPACVGAVGD--EVWWVAPRPA------EAGRATLVRR-RADGAEESALPAPWNVRNRVFEYSGFPWAGVPRP 88 (662)
T ss_dssp HHHHTCSCCEEEEEETT--EEEEEEEETT------TTTEEEEEEE-CTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCS
T ss_pred HHhhcCCccceeEEcCC--eEEEEecCcc------cCCcEEEEEE-CCCCCcceeCCCCccccccccccCCccceeeeec
Confidence 34445555667889865 6776654210 0135567776 667777777764321 24577 9
Q ss_pred CCe--EEEEEecCCCceEEEEEecC--C-CcccccCCccceeeCC-----CCCccccceeecCCcEEEEEEeccC-----
Q 039497 201 DST--IYFHRQADDGWWSIFRVSFP--E-NLEFLGFPIAPTRVTP-----PGVHCFTPAAFHDGKRLAVATRRKN----- 265 (642)
Q Consensus 201 dg~--~~~~~~~~~g~~~l~~~~~~--~-~~~~~~~~~~~~~l~~-----~~~~~~~~~~SpdG~~l~~~~~~~~----- 265 (642)
||+ ++|+. .. ..+||.++.. + + ...+++. +......++|||||++|+++..+..
T Consensus 89 Dg~~~la~~~-~~--~~~l~~~~~~~~g~~--------~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~ 157 (662)
T 3azo_A 89 AGGPLLVFTH-FG--DQRLYAFEPDAPGGA--------VPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPS 157 (662)
T ss_dssp SSSCEEEEEB-TT--TCCEEEECTTSTTCC--------CCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTT
T ss_pred CCCeEEEEEE-CC--CCeEEEEcCCCCCCC--------CCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCC
Confidence 995 45544 32 4589999987 4 6 5677776 3445667899999999999775421
Q ss_pred CceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeecc-CCCceeEEeeeCCCccEEcCCCCEE
Q 039497 266 RNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVA-SPVKELRMLRLNGSFPSFSPDGGLI 344 (642)
Q Consensus 266 ~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~l 344 (642)
.....|++||+........ . .. ..+. ... .....+.|||||++|
T Consensus 158 ~~~~~i~~~~~~~~~~~~~-------------------~------~~---~~l~~~~~-------~~~~~~~~SpDG~~l 202 (662)
T 3azo_A 158 DVRRFLAAVPLDGSAAADR-------------------S------AV---RELSDDAH-------RFVTGPRLSPDGRQA 202 (662)
T ss_dssp CEEEEEEEEETTSTTTTCG-------------------G------GS---EESSCSCS-------SEECCCEECTTSSEE
T ss_pred CceeEEEEEECCCCccccC-------------------C------ce---eEEEecCC-------CcccCceECCCCCEE
Confidence 2234666666521000000 0 00 0000 000 011357899999999
Q ss_pred EEEecCC-----CceeEEEEECC-CC---CeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecC
Q 039497 345 VFNHDFE-----LNAGIKIAKSD-GS---KRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD 413 (642)
Q Consensus 345 ~~~~~~~-----~~~~l~~~d~~-~~---~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 413 (642)
+|..... ....||+++++ ++ +.+++.. ...+..+.|||||+ ++|.+.. ++...||.++. +
T Consensus 203 a~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~------~~~~~l~~~~~--~ 273 (662)
T 3azo_A 203 VWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDR------TGWWNLHRVDP--A 273 (662)
T ss_dssp EEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECT------TSSCEEEEECT--T
T ss_pred EEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECC------CCCeEEEEEEC--C
Confidence 9977533 34689999998 46 5555654 35678899999999 7777742 44557777765 3
Q ss_pred CCCCCCCCccccceEEccccCCCC---------ccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC
Q 039497 414 PSDDNNREEIPCDVKILTKEETGN---------NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW 484 (642)
Q Consensus 414 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~ 484 (642)
++ ..+.++... .. ...++|+|||+. ++.... +..+||.+++++++ ++.|+.+..
T Consensus 274 -----~~-----~~~~l~~~~-~~~~~p~w~~~~~~~~~~~~~~~-~~~~~~-~~~~l~~~d~~~~~----~~~l~~~~~ 336 (662)
T 3azo_A 274 -----TG-----AATQLCRRE-EEFAGPLWTPGMRWFAPLANGLI-AVVHGK-GAAVLGILDPESGE----LVDAAGPWT 336 (662)
T ss_dssp -----TC-----CEEESSCCS-SBSSCCCCSTTCCSEEECTTSCE-EEEEBS-SSCEEEEEETTTTE----EEECCSSCC
T ss_pred -----CC-----ceeeccccc-ccccCccccccCceEeEeCCCEE-EEEEEc-CccEEEEEECCCCc----EEEecCCCC
Confidence 33 455665543 22 235677788764 455556 88899999998777 488876544
Q ss_pred cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec
Q 039497 485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA 531 (642)
Q Consensus 485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 531 (642)
.+. ..|++|++.++|...... ....||++|+++++.+.++..
T Consensus 337 ~~~-~~~s~~~~~~~~~~~~~~----~~~~i~~~d~~~g~~~~l~~~ 378 (662)
T 3azo_A 337 EWA-ATLTVSGTRAVGVAASPR----TAYEVVELDTVTGRARTIGAR 378 (662)
T ss_dssp EEE-EEEEEETTEEEEEEEETT----EEEEEEEEETTTCCEEEEESC
T ss_pred eEE-EEEecCCCEEEEEEcCCC----CCCEEEEEECCCCceEEeecC
Confidence 333 233888988888876543 567899999999998888753
No 45
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.81 E-value=3.6e-18 Score=178.48 Aligned_cols=308 Identities=11% Similarity=0.028 Sum_probs=197.4
Q ss_pred CCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC--cceEeeCCeEEEEEecCCCceEEEEE
Q 039497 143 YSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG--WPTWSGDSTIYFHRQADDGWWSIFRV 220 (642)
Q Consensus 143 ~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~--~~~wspdg~~~~~~~~~~g~~~l~~~ 220 (642)
..++|||||++||....+. .|++|++.+++..+....... ...|++|+.++++. ..+|. |..+
T Consensus 60 ~~~~~s~~g~~l~~~~~d~------------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~--i~iw 124 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDG------------HDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILG-TTEGD--IKVL 124 (420)
T ss_dssp TTCEEEEEETTEEEEEETT------------EEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEE-ETTSC--EEEE
T ss_pred cceeeeecCCeEEEEEcCC------------cEEEEEecccceeeEEecCCceEEEEEecCCCEEEEE-ECCCC--EEEE
Confidence 4689999999999887665 799999887765444332221 34789999888877 45674 4555
Q ss_pred ecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEE
Q 039497 221 SFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHR 300 (642)
Q Consensus 221 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~ 300 (642)
++.++. ....+..+...+..++|+|+|++|+....++ .+.+||+..... +.
T Consensus 125 d~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~-----~i~iwd~~~~~~--------------~~--- 175 (420)
T 3vl1_A 125 DSNFNL-------QREIDQAHVSEITKLKFFPSGEALISSSQDM-----QLKIWSVKDGSN--------------PR--- 175 (420)
T ss_dssp CTTSCE-------EEEETTSSSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTCCC--------------CE---
T ss_pred eCCCcc-------eeeecccccCccEEEEECCCCCEEEEEeCCC-----eEEEEeCCCCcC--------------ce---
Confidence 666662 2233356666788899999999888865444 899999832110 00
Q ss_pred eecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---------
Q 039497 301 FRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--------- 371 (642)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--------- 371 (642)
.+ .... .....+.|+|+|+.|+.... ...|.++|+.+++......
T Consensus 176 -------------~~---~~h~-------~~v~~~~~~~~~~~l~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~~~~v 229 (420)
T 3vl1_A 176 -------------TL---IGHR-------ATVTDIAIIDRGRNVLSASL---DGTIRLWECGTGTTIHTFNRKENPHDGV 229 (420)
T ss_dssp -------------EE---ECCS-------SCEEEEEEETTTTEEEEEET---TSCEEEEETTTTEEEEEECBTTBTTCCE
T ss_pred -------------EE---cCCC-------CcEEEEEEcCCCCEEEEEcC---CCcEEEeECCCCceeEEeecCCCCCCCc
Confidence 00 0000 01124578888888876554 3567777887765444332
Q ss_pred -----------------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC
Q 039497 372 -----------------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE 434 (642)
Q Consensus 372 -----------------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 434 (642)
...+..+.|+|+|+.|+.... ++.+++|++.. +. ....+....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------dg~i~i~d~~~--------~~-----~~~~~~~~~ 289 (420)
T 3vl1_A 230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV-------SGVITVHNVFS--------KE-----QTIQLPSKF 289 (420)
T ss_dssp EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET-------TSCEEEEETTT--------CC-----EEEEECCTT
T ss_pred cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC-------CCeEEEEECCC--------Cc-----eeEEccccc
Confidence 134556788999999888764 67899999855 22 344443332
Q ss_pred CCCccCcEECCCCC-eEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccceeEecCCCEEEEEecCCCCCCCCc
Q 039497 435 TGNNAFPSCSPDGK-FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA 512 (642)
Q Consensus 435 ~~~~~~~~~SpDg~-~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~ 512 (642)
...+..+.|+|+|+ +|+..+ .+ ..|++||+.+++. .+..+.. +...+.. .++++|++|+..+.++
T Consensus 290 ~~~v~~~~~~~~~~~~l~~g~-~d--g~i~vwd~~~~~~--~~~~~~~~~~~~v~~-~~~~~~~~l~s~~~d~------- 356 (420)
T 3vl1_A 290 TCSCNSLTVDGNNANYIYAGY-EN--GMLAQWDLRSPEC--PVGEFLINEGTPINN-VYFAAGALFVSSGFDT------- 356 (420)
T ss_dssp SSCEEEEEECSSCTTEEEEEE-TT--SEEEEEETTCTTS--CSEEEEESTTSCEEE-EEEETTEEEEEETTTE-------
T ss_pred CCCceeEEEeCCCCCEEEEEe-CC--CeEEEEEcCCCcC--chhhhhccCCCCceE-EEeCCCCEEEEecCCc-------
Confidence 25678899999999 665555 33 4899999988752 1244443 2233344 4666888777665544
Q ss_pred eeEEEEeCCCCce----------EEeeecCCCCCCCcccccccceEEcCCCC---EEEEEEecC
Q 039497 513 FSLYVIKPDGSGL----------RRIHVAGPEGSGDVDRERINHVCFSADGE---WLLFTANLG 563 (642)
Q Consensus 513 ~~l~~~d~~~~~~----------~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~---~l~~~~~~~ 563 (642)
.|.+|++..... ..+. .... .+..+.|+|||+ .|+.+...+
T Consensus 357 -~v~iw~~~~~~~~~~~~~~~~~~~~~--~~~~-------~v~~~~~s~~~~~~g~l~a~g~~g 410 (420)
T 3vl1_A 357 -SIKLDIISDPESERPAIEFETPTFLV--SNDD-------AVSQFCYVSDDESNGEVLEVGKNN 410 (420)
T ss_dssp -EEEEEEECCTTCCSCEECTTSCEEEC--CSSC-------CCCEEEEECCSSSSCEEEEEETTT
T ss_pred -cEEEEeccCCCCCccceeccCccEEc--cCCc-------ceEEEEEccCCCCcceEEEEcCCc
Confidence 388898866311 1111 2222 567899999999 787777654
No 46
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.81 E-value=2.9e-17 Score=172.35 Aligned_cols=303 Identities=13% Similarity=0.047 Sum_probs=198.1
Q ss_pred ceEEEEccCCceEecc--cCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeec-----CC
Q 039497 121 ALYSTDLKASKFTRLT--PYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCE-----RG 193 (642)
Q Consensus 121 ~l~~~~~~~~~~~~lt--~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-----~~ 193 (642)
.||.++..++....+. ........++|||++ .+++.... ...|++|++.+++..+.... +.
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~-----------~~~i~~~d~~~g~~~~~~~~~~~~~~~ 169 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGFQPKSVRFIDNT-RLAIPLLE-----------DEGMDVLDINSGQTVRLSPPEKYKKKL 169 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSSCBCCCEESSSS-EEEEEBTT-----------SSSEEEEETTTCCEEEECCCHHHHTTC
T ss_pred EEEEECCCCCcceEEEEEcCCCCceEEEEeCCC-eEEEEeCC-----------CCeEEEEECCCCeEeeecCcccccccC
Confidence 6888877665333222 223334578999955 45544332 22699999999887764331 11
Q ss_pred C---cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceee
Q 039497 194 G---WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRH 270 (642)
Q Consensus 194 ~---~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~ 270 (642)
. .++|+|+++++++. ..++ .|+.++..++. ....+..+...+..++|+|+|++++++.... ..
T Consensus 170 ~~v~~~~~~~~~~~~~s~-~~d~--~v~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~ 235 (433)
T 3bws_A 170 GFVETISIPEHNELWVSQ-MQAN--AVHVFDLKTLA-------YKATVDLTGKWSKILLYDPIRDLVYCSNWIS----ED 235 (433)
T ss_dssp CEEEEEEEGGGTEEEEEE-GGGT--EEEEEETTTCC-------EEEEEECSSSSEEEEEEETTTTEEEEEETTT----TE
T ss_pred CceeEEEEcCCCEEEEEE-CCCC--EEEEEECCCce-------EEEEEcCCCCCeeEEEEcCCCCEEEEEecCC----Cc
Confidence 1 35899999988887 4456 66777777663 3445555555677889999999887765332 27
Q ss_pred EEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecC
Q 039497 271 IEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDF 350 (642)
Q Consensus 271 i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 350 (642)
|++||+... +.+ ..+... .. ...+.|+|+|+.|++....
T Consensus 236 i~~~d~~~~--------------~~~-------------------~~~~~~-~~-------~~~~~~~~~g~~l~~~~~~ 274 (433)
T 3bws_A 236 ISVIDRKTK--------------LEI-------------------RKTDKI-GL-------PRGLLLSKDGKELYIAQFS 274 (433)
T ss_dssp EEEEETTTT--------------EEE-------------------EECCCC-SE-------EEEEEECTTSSEEEEEEEE
T ss_pred EEEEECCCC--------------cEE-------------------EEecCC-CC-------ceEEEEcCCCCEEEEEECC
Confidence 888886211 100 000000 00 1245899999988886542
Q ss_pred C-----CceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccc
Q 039497 351 E-----LNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIP 424 (642)
Q Consensus 351 ~-----~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 424 (642)
. ....|+++|+.+++...... ...+..+.|+|+++.++++.. .++.+.+|++.. +.
T Consensus 275 ~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~------~~~~v~v~d~~~---------~~--- 336 (433)
T 3bws_A 275 ASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDM------CCSKIEVYDLKE---------KK--- 336 (433)
T ss_dssp SCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEET------TTTEEEEEETTT---------TE---
T ss_pred CCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEec------CCCEEEEEECCC---------Cc---
Confidence 2 35689999998877655443 456778999999999988863 377888888743 21
Q ss_pred cceEEccccCCCCccCcEECCCCCeEEEEeCCCC------------ceeEEEEECCCCccccceeeCCCCCCcccceeEe
Q 039497 425 CDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG------------HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492 (642)
Q Consensus 425 ~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g------------~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~s 492 (642)
....+. .. .....++|+|||++|++.....+ +..|++||+.+++. +..+.. ...+..++|+
T Consensus 337 -~~~~~~-~~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~---~~~~~~-~~~~~~~~~s 409 (433)
T 3bws_A 337 -VQKSIP-VF-DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV---KEFWEA-GNQPTGLDVS 409 (433)
T ss_dssp -EEEEEE-CS-SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE---EEEEEC-SSSEEEEEEC
T ss_pred -EEEEec-CC-CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE---EEEecC-CCCCceEEEc
Confidence 233333 33 45678999999999988876433 23899999998885 444443 3456788999
Q ss_pred cCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDG 522 (642)
Q Consensus 493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~ 522 (642)
|||++|++.+.... .|++|++++
T Consensus 410 ~dg~~l~~~~~~d~-------~i~v~~~~~ 432 (433)
T 3bws_A 410 PDNRYLVISDFLDH-------QIRVYRRDG 432 (433)
T ss_dssp TTSCEEEEEETTTT-------EEEEEEETT
T ss_pred CCCCEEEEEECCCC-------eEEEEEecC
Confidence 99999988875332 388888753
No 47
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.81 E-value=1.9e-17 Score=185.18 Aligned_cols=303 Identities=14% Similarity=0.070 Sum_probs=194.5
Q ss_pred CCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecC----C-----CcceEeeCCe-EEEEEecCCCc--e
Q 039497 148 SYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCER----G-----GWPTWSGDST-IYFHRQADDGW--W 215 (642)
Q Consensus 148 SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~----~-----~~~~wspdg~-~~~~~~~~~g~--~ 215 (642)
+|||++++|..... ......||+++..+++.+.++... + ..++|||||+ ++|.. ...|. .
T Consensus 80 ~~dG~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~-~~~G~~~~ 151 (710)
T 2xdw_A 80 FKKGKRYFYFYNTG-------LQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGL-SASGSDWV 151 (710)
T ss_dssp EEETTEEEEEEECS-------SCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEE-EETTCSCE
T ss_pred EEECCEEEEEEEcC-------CceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEE-cCCCCceE
Confidence 59999999987644 112347888888888877665422 1 2469999996 44554 33443 4
Q ss_pred EEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCC-----------ceeeEEEEEeecCCCCcc
Q 039497 216 SIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNR-----------NFRHIEIYDLTLNPNFHH 284 (642)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~-----------~~~~i~~~d~~~~~~~~~ 284 (642)
.|+.+++.++ +....+........++|||||+.|+|+...... ....|+++++
T Consensus 152 ~i~v~d~~tg--------~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l-------- 215 (710)
T 2xdw_A 152 TIKFMKVDGA--------KELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVL-------- 215 (710)
T ss_dssp EEEEEETTTT--------EEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEET--------
T ss_pred EEEEEECCCC--------CCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEEC--------
Confidence 9999999998 444433333235678999999999997755421 1122333333
Q ss_pred cCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCce-eEEeeeC-----CCccEEcCCCCEEEEEecCCC--ceeE
Q 039497 285 YNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKE-LRMLRLN-----GSFPSFSPDGGLIVFNHDFEL--NAGI 356 (642)
Q Consensus 285 ~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~spdg~~l~~~~~~~~--~~~l 356 (642)
...... ..+.... ...+.|||||++|++...... ...|
T Consensus 216 ----------------------------------~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l 261 (710)
T 2xdw_A 216 ----------------------------------GTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRL 261 (710)
T ss_dssp ----------------------------------TSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEE
T ss_pred ----------------------------------CCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEE
Confidence 111100 0010110 024689999999999775332 5799
Q ss_pred EEEECCC------C--CeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceE
Q 039497 357 KIAKSDG------S--KRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVK 428 (642)
Q Consensus 357 ~~~d~~~------~--~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 428 (642)
|++++++ + ..+.+..........|+|||+.|++.+.. +.....|+.++. + ++.. ...+
T Consensus 262 ~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~-----~~~~~~l~~~d~--~-----~~~~--~~~~ 327 (710)
T 2xdw_A 262 WYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNR-----HSPNYRLINIDF--T-----DPEE--SKWK 327 (710)
T ss_dssp EEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECT-----TCTTCEEEEEET--T-----SCCG--GGCE
T ss_pred EEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECC-----CCCCCEEEEEeC--C-----CCCc--ccce
Confidence 9999986 4 45666553333344699999999999853 223456666665 2 1210 0235
Q ss_pred EccccCC-CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCC
Q 039497 429 ILTKEET-GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP 507 (642)
Q Consensus 429 ~l~~~~~-~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~ 507 (642)
.+..+.. ..+..+.|++ +.+|++...+++..+|+++++.+|+. ++.|......+..+.++||++.|+|......
T Consensus 328 ~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~---~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~- 402 (710)
T 2xdw_A 328 VLVPEHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGAL---LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFL- 402 (710)
T ss_dssp EEECCCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCCE---EEEECCCSSEEEEEECCTTCSEEEEEEECSS-
T ss_pred eccCCCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCCE---EEecCCCCceEEEEecCCCCCEEEEEEeCCC-
Confidence 5554431 2455678885 55677777777888999999966764 4667655556677889999999888866543
Q ss_pred CCCCceeEEEEeCCCCc--eEEeee
Q 039497 508 DNVEAFSLYVIKPDGSG--LRRIHV 530 (642)
Q Consensus 508 ~~~~~~~l~~~d~~~~~--~~~l~~ 530 (642)
.+..||++|+.+++ .+.+..
T Consensus 403 ---~P~~i~~~d~~tg~~~~~~l~~ 424 (710)
T 2xdw_A 403 ---SPGIIYHCDLTKEELEPRVFRE 424 (710)
T ss_dssp ---CCCEEEEEETTSSSCCCEEEEE
T ss_pred ---CCCEEEEEECCCCccceEEeee
Confidence 56789999999887 666654
No 48
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.81 E-value=6.1e-19 Score=184.01 Aligned_cols=300 Identities=11% Similarity=0.061 Sum_probs=184.3
Q ss_pred CCceeCCCCc-EEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeE---eecCC--CcceEeeCCeEEEEEecCCCceE
Q 039497 143 YSPSVSYSGK-FIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVI---VCERG--GWPTWSGDSTIYFHRQADDGWWS 216 (642)
Q Consensus 143 ~~~~~SPDG~-~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l---~~~~~--~~~~wspdg~~~~~~~~~~g~~~ 216 (642)
...+|||||+ +||.....+..-.. ......|.+|++.+++..+. ..... ..++|+||+.++++. ..+|...
T Consensus 16 ~~~~~sp~g~~~l~~g~~~g~~~~~--~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~v~ 92 (416)
T 2pm9_A 16 ATFAWSHDKIPLLVSGTVSGTVDAN--FSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGA-LDNGSLE 92 (416)
T ss_dssp CBCCBCSSSSCEEEEBCBSSCCCSS--CCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEE-ESSSCEE
T ss_pred ceEeeCCCCCCEEEEEecCcccccc--cCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEE-ccCCeEE
Confidence 4579999998 56654221100000 01234789999988753211 11112 246999999877776 4577666
Q ss_pred EEEEecCC-CcccccCCccceeeCCCCCccccceeecC-CcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCC
Q 039497 217 IFRVSFPE-NLEFLGFPIAPTRVTPPGVHCFTPAAFHD-GKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSE 294 (642)
Q Consensus 217 l~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~Spd-G~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~ 294 (642)
||.+.... +.. ....+..+...+..++|+|+ +++|+....+ ..|.+||+..........
T Consensus 93 vw~~~~~~~~~~------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~-------- 153 (416)
T 2pm9_A 93 LYSTNEANNAIN------SMARFSNHSSSVKTVKFNAKQDNVLASGGNN-----GEIFIWDMNKCTESPSNY-------- 153 (416)
T ss_dssp EECCSSTTSCCC------EEEECCCSSSCCCEEEECSSSTTBEEEECSS-----SCEEBCBTTTTSSCTTTC--------
T ss_pred Eeeccccccccc------chhhccCCccceEEEEEcCCCCCEEEEEcCC-----CeEEEEECCCCccccccc--------
Confidence 66554311 110 34455666667888999998 7777764433 378888884322000000
Q ss_pred EEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCC-CCEEEEEecCCCceeEEEEECCCCCeeEEee--
Q 039497 295 FIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPD-GGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-- 371 (642)
Q Consensus 295 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-- 371 (642)
....+..... .......+.|+|+ ++.|+.... ...|.++|+..++......
T Consensus 154 ----------------~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~ 207 (416)
T 2pm9_A 154 ----------------TPLTPGQSMS-------SVDEVISLAWNQSLAHVFASAGS---SNFASIWDLKAKKEVIHLSYT 207 (416)
T ss_dssp ----------------CCBCCCCSCC-------SSCCCCEEEECSSCTTEEEEESS---SSCEEEEETTTTEEEEEECCC
T ss_pred ----------------cccccccccC-------CCCCeeEEEeCCCCCcEEEEEcC---CCCEEEEECCCCCcceEEecc
Confidence 0000000000 0112235689999 555555432 4678899998876544433
Q ss_pred ------cCCceeeeeecCCC-EEEEEEcCCCcccCCC---eEEEEEEEeecCCCCCCCCCccccceEEcc-ccCCCCccC
Q 039497 372 ------DRTAFYNSWSPTEK-HVIYTSTGPIFQSERA---TVQIARVSFQLDPSDDNNREEIPCDVKILT-KEETGNNAF 440 (642)
Q Consensus 372 ------~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~ 440 (642)
...+..+.|+|++. .|+.... ++ .+++|++.. +.. ....+. .+. ..+..
T Consensus 208 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------d~~~~~i~~~d~~~--------~~~----~~~~~~~~~~-~~v~~ 267 (416)
T 2pm9_A 208 SPNSGIKQQLSVVEWHPKNSTRVATATG-------SDNDPSILIWDLRN--------ANT----PLQTLNQGHQ-KGILS 267 (416)
T ss_dssp CCSSCCCCCEEEEEECSSCTTEEEEEEC-------CSSSCCCCEEETTS--------TTS----CSBCCCSCCS-SCEEE
T ss_pred ccccccCCceEEEEECCCCCCEEEEEEC-------CCCCceEEEEeCCC--------CCC----CcEEeecCcc-CceeE
Confidence 24578899999985 5555542 44 889998865 111 334444 344 67788
Q ss_pred cEECC-CCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCC-CEEEEEecCCCCCCCCceeEEEE
Q 039497 441 PSCSP-DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG-DLIAFSSNRHNPDNVEAFSLYVI 518 (642)
Q Consensus 441 ~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG-~~l~~~~~~~~~~~~~~~~l~~~ 518 (642)
+.|+| |+++|+..+. ...|.+||+.+++. +..+..+...+..++|+|+| ++|+..+.++. |.+|
T Consensus 268 ~~~s~~~~~~l~s~~~---dg~v~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~--------i~iw 333 (416)
T 2pm9_A 268 LDWCHQDEHLLLSSGR---DNTVLLWNPESAEQ---LSQFPARGNWCFKTKFAPEAPDLFACASFDNK--------IEVQ 333 (416)
T ss_dssp EEECSSCSSCEEEEES---SSEEEEECSSSCCE---EEEEECSSSCCCCEEECTTCTTEEEECCSSSE--------EEEE
T ss_pred EEeCCCCCCeEEEEeC---CCCEEEeeCCCCcc---ceeecCCCCceEEEEECCCCCCEEEEEecCCc--------EEEE
Confidence 99999 8888887764 34799999998886 66777777778899999999 66666665543 8999
Q ss_pred eCCCCc
Q 039497 519 KPDGSG 524 (642)
Q Consensus 519 d~~~~~ 524 (642)
++....
T Consensus 334 ~~~~~~ 339 (416)
T 2pm9_A 334 TLQNLT 339 (416)
T ss_dssp ESCCCC
T ss_pred EccCCC
Confidence 997654
No 49
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.81 E-value=2.9e-17 Score=172.43 Aligned_cols=341 Identities=11% Similarity=0.054 Sum_probs=209.0
Q ss_pred ceeCCCCcEEEEEecCCCCCC----CCCCCCeeeEEEEEecCCCceeEee---cCC-CcceEeeCCeEEEEEecCCCceE
Q 039497 145 PSVSYSGKFIAVASYESRPWP----GEFHELNTDIVVFQESDPNKRVIVC---ERG-GWPTWSGDSTIYFHRQADDGWWS 216 (642)
Q Consensus 145 ~~~SPDG~~la~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~l~~---~~~-~~~~wspdg~~~~~~~~~~g~~~ 216 (642)
|.|+|+++.+++.......-. .....+...||.++..++..+.+.. ... ..++|+|+++++++. ..++ .
T Consensus 69 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~--~ 145 (433)
T 3bws_A 69 PVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPL-LEDE--G 145 (433)
T ss_dssp ECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEB-TTSS--S
T ss_pred eeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEe-CCCC--e
Confidence 448898888776653321000 0001112367778777664443332 111 256999977777776 4455 5
Q ss_pred EEEEecCCCcccccCCccceeeC------CCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeec
Q 039497 217 IFRVSFPENLEFLGFPIAPTRVT------PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVS 290 (642)
Q Consensus 217 l~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~s 290 (642)
|+.++..++ +..+.. .+...+..++|+|+|+.++.... ...+++||+..
T Consensus 146 i~~~d~~~g--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~-----d~~v~~~d~~~------------ 200 (433)
T 3bws_A 146 MDVLDINSG--------QTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQ-----ANAVHVFDLKT------------ 200 (433)
T ss_dssp EEEEETTTC--------CEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG-----GTEEEEEETTT------------
T ss_pred EEEEECCCC--------eEeeecCcccccccCCceeEEEEcCCCEEEEEECC-----CCEEEEEECCC------------
Confidence 777787776 333322 23335666788999986665332 23788888622
Q ss_pred CCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEe
Q 039497 291 ANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLI 370 (642)
Q Consensus 291 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~ 370 (642)
++.+.... ... .....+.|+|+|+++++... ....|+++|+.+++.....
T Consensus 201 --~~~~~~~~-------------------~~~-------~~~~~~~~~~~~~~l~~~~~--~~~~i~~~d~~~~~~~~~~ 250 (433)
T 3bws_A 201 --LAYKATVD-------------------LTG-------KWSKILLYDPIRDLVYCSNW--ISEDISVIDRKTKLEIRKT 250 (433)
T ss_dssp --CCEEEEEE-------------------CSS-------SSEEEEEEETTTTEEEEEET--TTTEEEEEETTTTEEEEEC
T ss_pred --ceEEEEEc-------------------CCC-------CCeeEEEEcCCCCEEEEEec--CCCcEEEEECCCCcEEEEe
Confidence 11111110 000 01124589999998877653 2458999999887655444
Q ss_pred e-cCCceeeeeecCCCEEEEEEcCCCccc-CCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCC
Q 039497 371 K-DRTAFYNSWSPTEKHVIYTSTGPIFQS-ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGK 448 (642)
Q Consensus 371 ~-~~~~~~~~~spdg~~l~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~ 448 (642)
. ...+..+.|+|+|+.|++......... .++.+.+|++.. + +........ .....+.|+|||+
T Consensus 251 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~---------~-----~~~~~~~~~-~~~~~~~~~~~g~ 315 (433)
T 3bws_A 251 DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK---------E-----KLIDTIGPP-GNKRHIVSGNTEN 315 (433)
T ss_dssp CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT---------T-----EEEEEEEEE-ECEEEEEECSSTT
T ss_pred cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC---------C-----cEEeeccCC-CCcceEEECCCCC
Confidence 3 455788999999999988874211111 245677777643 2 222222222 3566789999999
Q ss_pred eEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCC-------CCCceeEEEEeCC
Q 039497 449 FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD-------NVEAFSLYVIKPD 521 (642)
Q Consensus 449 ~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~-------~~~~~~l~~~d~~ 521 (642)
+++++...++ .|++||+.+++. ...+. .......++|+|||++|++........ ......|++||+.
T Consensus 316 ~l~~~~~~~~--~v~v~d~~~~~~---~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~ 389 (433)
T 3bws_A 316 KIYVSDMCCS--KIEVYDLKEKKV---QKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT 389 (433)
T ss_dssp EEEEEETTTT--EEEEEETTTTEE---EEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred EEEEEecCCC--EEEEEECCCCcE---EEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECC
Confidence 9988865443 899999998875 34443 344567889999999998887643100 0012369999998
Q ss_pred CCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC
Q 039497 522 GSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589 (642)
Q Consensus 522 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 589 (642)
+++....... .. .+..++|+|||++|++.....+ .|.+|++++
T Consensus 390 ~~~~~~~~~~--~~-------~~~~~~~s~dg~~l~~~~~~d~----------------~i~v~~~~~ 432 (433)
T 3bws_A 390 TDTVKEFWEA--GN-------QPTGLDVSPDNRYLVISDFLDH----------------QIRVYRRDG 432 (433)
T ss_dssp TTEEEEEEEC--SS-------SEEEEEECTTSCEEEEEETTTT----------------EEEEEEETT
T ss_pred CCcEEEEecC--CC-------CCceEEEcCCCCEEEEEECCCC----------------eEEEEEecC
Confidence 8776655442 22 4678999999999987765322 677777653
No 50
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.80 E-value=5.3e-18 Score=177.09 Aligned_cols=299 Identities=11% Similarity=0.012 Sum_probs=205.8
Q ss_pred CccccceeecCCc-EEEEEEeccCCceeeEEEEEe----ecCC------------------------CCcccCCeecCCC
Q 039497 243 VHCFTPAAFHDGK-RLAVATRRKNRNFRHIEIYDL----TLNP------------------------NFHHYNPFVSANS 293 (642)
Q Consensus 243 ~~~~~~~~SpdG~-~l~~~~~~~~~~~~~i~~~d~----~~~~------------------------~~~~~~~~~spDg 293 (642)
..+..++|+|||+ +|+....++ .+.+|++ .... ...+..+.|+|||
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 120 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNS-----VARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG 120 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBT-----EEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred CceEEEEECCCCCcEEEEecCCc-----eEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence 3577899999999 888865443 7888888 3322 2356678899999
Q ss_pred CEEEEEEeecCCCCCCcccceEeeccCCCceeEEeee---CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEe
Q 039497 294 EFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRL---NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLI 370 (642)
Q Consensus 294 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~ 370 (642)
+.|+....++. ..+|- ..+. .+..... ....+.|+|+++.|+.... ...|.++++..++.....
T Consensus 121 ~~l~~~~~dg~------i~i~~--~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~ 187 (425)
T 1r5m_A 121 NSIVTGVENGE------LRLWN--KTGA--LLNVLNFHRAPIVSVKWNKDGTHIISMDV---ENVTILWNVISGTVMQHF 187 (425)
T ss_dssp SEEEEEETTSC------EEEEE--TTSC--EEEEECCCCSCEEEEEECTTSSEEEEEET---TCCEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCe------EEEEe--CCCC--eeeeccCCCccEEEEEECCCCCEEEEEec---CCeEEEEECCCCcEEEEe
Confidence 99998765443 33332 2222 1111111 1245789999998887654 367888999877654443
Q ss_pred e--cCC---------------ceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcccc
Q 039497 371 K--DRT---------------AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE 433 (642)
Q Consensus 371 ~--~~~---------------~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 433 (642)
. ... +..+.|+|++. ++... .++.+.+|++.. +. ....+..+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~g~i~~~d~~~--------~~-----~~~~~~~~ 246 (425)
T 1r5m_A 188 ELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPG-------PKGAIFVYQITE--------KT-----PTGKLIGH 246 (425)
T ss_dssp CCC---------------CCCBSCCEEEETTE-EEEEC-------GGGCEEEEETTC--------SS-----CSEEECCC
T ss_pred eccccCccceeeccccCCcceeeEEEEcCCCE-EEEEc-------CCCeEEEEEcCC--------Cc-----eeeeeccC
Confidence 3 222 77889999865 44443 267888888754 22 34445444
Q ss_pred CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCce
Q 039497 434 ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF 513 (642)
Q Consensus 434 ~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~ 513 (642)
. ..+..+.|+|++++|+..+. ...|.+|++.+++. ...+..+...+..+.|+|+| .|+..+.++.
T Consensus 247 ~-~~i~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~------- 311 (425)
T 1r5m_A 247 H-GPISVLEFNDTNKLLLSASD---DGTLRIWHGGNGNS---QNCFYGHSQSIVSASWVGDD-KVISCSMDGS------- 311 (425)
T ss_dssp S-SCEEEEEEETTTTEEEEEET---TSCEEEECSSSBSC---SEEECCCSSCEEEEEEETTT-EEEEEETTSE-------
T ss_pred C-CceEEEEECCCCCEEEEEcC---CCEEEEEECCCCcc---ceEecCCCccEEEEEECCCC-EEEEEeCCCc-------
Confidence 4 67788999999998887773 34799999988775 56666666778889999999 7776666543
Q ss_pred eEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc--
Q 039497 514 SLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-- 591 (642)
Q Consensus 514 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 591 (642)
|++||+.+++...... .... .+..+.|+|||+.|+..+.++ .|.+|++..+.
T Consensus 312 -i~i~d~~~~~~~~~~~-~~~~-------~i~~~~~s~~~~~l~~~~~dg-----------------~i~i~~~~~~~~~ 365 (425)
T 1r5m_A 312 -VRLWSLKQNTLLALSI-VDGV-------PIFAGRISQDGQKYAVAFMDG-----------------QVNVYDLKKLNSK 365 (425)
T ss_dssp -EEEEETTTTEEEEEEE-CTTC-------CEEEEEECTTSSEEEEEETTS-----------------CEEEEECHHHHC-
T ss_pred -EEEEECCCCcEeEecc-cCCc-------cEEEEEEcCCCCEEEEEECCC-----------------eEEEEECCCCccc
Confidence 9999998876655443 2233 578899999999988877654 68888887654
Q ss_pred -------------------eeeccCCCC--CCCCcEEecCCceEEeecCCC
Q 039497 592 -------------------LRRLTWNGY--ENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 592 -------------------~~~lt~~~~--~~~~~~~s~dg~~~~~~~~~~ 621 (642)
+..+..+.. .+..++|+||+++|++....+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 416 (425)
T 1r5m_A 366 SRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQ 416 (425)
T ss_dssp -------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSS
T ss_pred eeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCc
Confidence 445555533 678999999999887765443
No 51
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.80 E-value=2.1e-17 Score=167.91 Aligned_cols=313 Identities=12% Similarity=0.088 Sum_probs=185.7
Q ss_pred CCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCCcceEeeCCe-EEEEEecC-CCceEEEEE
Q 039497 143 YSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDST-IYFHRQAD-DGWWSIFRV 220 (642)
Q Consensus 143 ~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~wspdg~-~~~~~~~~-~g~~~l~~~ 220 (642)
..|++ ||++|||....... ........||++++.+++.+++ .....+.|||||+ ++|..... ++..+||.+
T Consensus 18 ~~~~~--dG~~i~~~~~~~~~---~~~~~~~~l~~~d~~~~~~~~l--~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~ 90 (347)
T 2gop_A 18 SDPRT--KGELVAYVLTKANL---KDNKYENTIVIENLKNNARRFI--ENATMPRISPDGKKIAFMRANEEKKVSEIWVA 90 (347)
T ss_dssp EEEEE--ETTEEEEEEEEEET---TTTEEEEEEEEEETTTCCEEEE--ESCEEEEECTTSSEEEEEEEETTTTEEEEEEE
T ss_pred ccceE--CCcEEEEEEeecCc---ccCCccceEEEEeCCCCceEEc--ccCCCeEECCCCCEEEEEEeccCCCcceEEEE
Confidence 45778 99999998542100 0011356899999999988877 3334689999995 55655322 256789999
Q ss_pred ecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEE
Q 039497 221 SFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHR 300 (642)
Q Consensus 221 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~ 300 (642)
++.++ +..+++.... +..++|||||++|+|......
T Consensus 91 ~~~~g--------~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~----------------------------------- 126 (347)
T 2gop_A 91 DLETL--------SSKKILEAKN-IRSLEWNEDSRKLLIVGFKRR----------------------------------- 126 (347)
T ss_dssp ETTTT--------EEEEEEEESE-EEEEEECTTSSEEEEEEECCC-----------------------------------
T ss_pred ECCCC--------ceEEEEcCCC-ccceeECCCCCEEEEEEccCC-----------------------------------
Confidence 99887 5555554433 556667777777776432210
Q ss_pred eecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCe-eEEeecCCceeee
Q 039497 301 FRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR-WTLIKDRTAFYNS 379 (642)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~ 379 (642)
... .... . ....+..+|..+.. ....+|+++++++++. +.+... .+..+.
T Consensus 127 --~~~---------------~~~~--~-----~~~~~~~~g~~~~~----~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~ 177 (347)
T 2gop_A 127 --EDE---------------DFIF--E-----DDVPAWFDDLGFFD----GEKTTFWIFDTESEEVIEEFEKP-RFSSGI 177 (347)
T ss_dssp --C-------------------------------CCCC-------------CEEEEEEEETTTTEEEEEEEEE-TTCEEE
T ss_pred --CcC---------------CcEE--E-----cccceeecCccccc----CccceEEEEECCCCeEEeeecCC-Cccccc
Confidence 000 0000 0 01122334432221 2347899999998887 666554 778899
Q ss_pred eecCCCEEEEEEcCCCcccCCC-eEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCC-
Q 039497 380 WSPTEKHVIYTSTGPIFQSERA-TVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRS- 457 (642)
Q Consensus 380 ~spdg~~l~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~- 457 (642)
|+||| ++|+........... ...||.++. + ..+.+... ... ..+||||++|+|.+...
T Consensus 178 ~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~---------~-----~~~~l~~~--~~~--~~~spdg~~l~~~~~~~~ 237 (347)
T 2gop_A 178 WHRDK--IVVNVPHREIIPQYFKFWDIYIWED---------G-----KEEKMFEK--VSF--YAVDSDGERILLYGKPEK 237 (347)
T ss_dssp EETTE--EEEEEECCCSSCCSSCCEEEEEEET---------T-----EEEEEEEE--ESE--EEEEECSSCEEEEECCSS
T ss_pred CCCCe--EEEEEecccccccccccccEEEeCC---------C-----ceEEeccC--cce--eeECCCCCEEEEEEcccc
Confidence 99999 555553210000002 456777653 2 45555543 222 23499999999988653
Q ss_pred ----CceeEEEEECCCCccccceeeCCCC-CCcccc-eeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec
Q 039497 458 ----GHKNLFVLDAVNGEFNGDIRQLTDG-PWIDTM-PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA 531 (642)
Q Consensus 458 ----g~~~l~~~d~~~g~~~~~~~~l~~~-~~~~~~-~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 531 (642)
....||++| +|+. +.++.. ...+.. +.|+ || +++..... +..+|| ++ + ++.+.++..
T Consensus 238 ~~~~~~~~l~~~d--~~~~----~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~-----~~~~l~-~~-~-g~~~~~~~~ 300 (347)
T 2gop_A 238 KYMSEHNKLYIYD--GKEV----MGILDEVDRGVGQAKIKD-GK--VYFTLFEE-----GSVNLY-IW-D-GEIKPIAKG 300 (347)
T ss_dssp SCCCSSCEEEEEC--SSCE----EESSTTCCSEEEEEEEET-TE--EEEEEEET-----TEEEEE-EE-S-SSEEEEECS
T ss_pred CCccccceEEEEC--CCce----EeccccCCcccCCccEEc-Cc--EEEEEecC-----CcEEEE-Ec-C-CceEEEecC
Confidence 245899999 5663 666654 345554 8999 88 55555443 456788 77 4 556656542
Q ss_pred CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCC
Q 039497 532 GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGY 600 (642)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~ 600 (642)
.+ .+..+.|++ + ++++....+. ..+||.++ ++.++||....
T Consensus 301 --~~-------~v~~~~~s~--~-~~~~~~~~~~-------------~~~l~~~~---g~~~~lt~~n~ 341 (347)
T 2gop_A 301 --RH-------WIMGFDVDE--I-VVYLKETATR-------------LRELFTWD---GEEKQLTDYND 341 (347)
T ss_dssp --SS-------EEEEEEESS--S-EEEEEECSSS-------------CCEEEEES---SSEEECCCTTS
T ss_pred --CC-------eEEeeeeeC--c-EEEEEcCCCC-------------hHHheEeC---CcEEEeccccH
Confidence 33 467788998 4 5555443322 13799887 56888887654
No 52
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.80 E-value=7.4e-17 Score=166.82 Aligned_cols=276 Identities=13% Similarity=0.167 Sum_probs=184.0
Q ss_pred EEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCc
Q 039497 204 IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFH 283 (642)
Q Consensus 204 ~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~ 283 (642)
++++....++ .|+.++..+++ ....+..+ ..+..++|+|||++|+++.... ..|++||+..
T Consensus 3 ~l~vs~~~d~--~v~v~d~~~~~-------~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d----~~i~v~d~~~----- 63 (391)
T 1l0q_A 3 FAYIANSESD--NISVIDVTSNK-------VTATIPVG-SNPMGAVISPDGTKVYVANAHS----NDVSIIDTAT----- 63 (391)
T ss_dssp EEEEEETTTT--EEEEEETTTTE-------EEEEEECS-SSEEEEEECTTSSEEEEEEGGG----TEEEEEETTT-----
T ss_pred EEEEEcCCCC--EEEEEECCCCe-------EEEEeecC-CCcceEEECCCCCEEEEECCCC----CeEEEEECCC-----
Confidence 3444435566 67777877773 23333333 3467789999999887765333 3788888622
Q ss_pred ccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCC
Q 039497 284 HYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG 363 (642)
Q Consensus 284 ~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~ 363 (642)
++.+... .... ....+.|+|||++|++... ....|+++|+.+
T Consensus 64 ---------~~~~~~~-----------------~~~~----------~v~~~~~spdg~~l~~~~~--~~~~v~v~d~~~ 105 (391)
T 1l0q_A 64 ---------NNVIATV-----------------PAGS----------SPQGVAVSPDGKQVYVTNM--ASSTLSVIDTTS 105 (391)
T ss_dssp ---------TEEEEEE-----------------ECSS----------SEEEEEECTTSSEEEEEET--TTTEEEEEETTT
T ss_pred ---------CeEEEEE-----------------ECCC----------CccceEECCCCCEEEEEEC--CCCEEEEEECCC
Confidence 1111110 0000 1124589999999888653 246799999998
Q ss_pred CCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcE
Q 039497 364 SKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPS 442 (642)
Q Consensus 364 ~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 442 (642)
++...... ...+..+.|+|||+.|+++.. .++.+.+|++.. +. ....+..+ .....+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~~~~v~~~d~~~---------~~----~~~~~~~~--~~~~~~~ 164 (391)
T 1l0q_A 106 NTVAGTVKTGKSPLGLALSPDGKKLYVTNN------GDKTVSVINTVT---------KA----VINTVSVG--RSPKGIA 164 (391)
T ss_dssp TEEEEEEECSSSEEEEEECTTSSEEEEEET------TTTEEEEEETTT---------TE----EEEEEECC--SSEEEEE
T ss_pred CeEEEEEeCCCCcceEEECCCCCEEEEEeC------CCCEEEEEECCC---------Cc----EEEEEecC--CCcceEE
Confidence 87655544 556788999999999988773 367888887643 21 23333333 3557789
Q ss_pred ECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497 443 CSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG 522 (642)
Q Consensus 443 ~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~ 522 (642)
|+|||++|++....+ ..|++||+.+++. ...+. .......++|+|||++|++..... ....|++||+.+
T Consensus 165 ~~~dg~~l~~~~~~~--~~v~~~d~~~~~~---~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~-----~~~~v~~~d~~~ 233 (391)
T 1l0q_A 165 VTPDGTKVYVANFDS--MSISVIDTVTNSV---IDTVK-VEAAPSGIAVNPEGTKAYVTNVDK-----YFNTVSMIDTGT 233 (391)
T ss_dssp ECTTSSEEEEEETTT--TEEEEEETTTTEE---EEEEE-CSSEEEEEEECTTSSEEEEEEECS-----SCCEEEEEETTT
T ss_pred ECCCCCEEEEEeCCC--CEEEEEECCCCeE---EEEEe-cCCCccceEECCCCCEEEEEecCc-----CCCcEEEEECCC
Confidence 999999998776544 4799999998875 33333 334567789999999999887521 123599999988
Q ss_pred CceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee
Q 039497 523 SGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR 593 (642)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 593 (642)
++........ . .+..+.|+|||++|+++....+ .|.+||+..+++.
T Consensus 234 ~~~~~~~~~~--~-------~~~~~~~s~dg~~l~~s~~~d~----------------~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 234 NKITARIPVG--P-------DPAGIAVTPDGKKVYVALSFXN----------------TVSVIDTATNTIT 279 (391)
T ss_dssp TEEEEEEECC--S-------SEEEEEECTTSSEEEEEETTTT----------------EEEEEETTTTEEE
T ss_pred CeEEEEEecC--C-------CccEEEEccCCCEEEEEcCCCC----------------EEEEEECCCCcEE
Confidence 7665444322 1 3467899999999987765432 7999999877643
No 53
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.80 E-value=1e-16 Score=162.87 Aligned_cols=306 Identities=12% Similarity=0.070 Sum_probs=189.3
Q ss_pred ecccCCC-ccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeE--e-ecCC---CcceEeeCCeEEE
Q 039497 134 RLTPYGV-VDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVI--V-CERG---GWPTWSGDSTIYF 206 (642)
Q Consensus 134 ~lt~~~~-~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l--~-~~~~---~~~~wspdg~~~~ 206 (642)
.|..+.. .....+|||||++||....+. .|.+|++.++..... . ..+. ..++|+|||.+++
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~------------~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~ 77 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDR------------RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLA 77 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTS------------CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEE
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCC------------eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEE
Confidence 3444443 345689999999999988766 688999988753321 1 1222 2459999999888
Q ss_pred EEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccC
Q 039497 207 HRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYN 286 (642)
Q Consensus 207 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 286 (642)
+. ..++...||.++..... ....+..+...+..++|+|||++|+....++ .+++||+.....
T Consensus 78 s~-s~D~~v~iw~~~~~~~~-------~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~-----~v~iwd~~~~~~----- 139 (345)
T 3fm0_A 78 SA-SFDATTCIWKKNQDDFE-------CVTTLEGHENEVKSVAWAPSGNLLATCSRDK-----SVWVWEVDEEDE----- 139 (345)
T ss_dssp EE-ETTSCEEEEEECCC-EE-------EEEEECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEECTTSC-----
T ss_pred EE-ECCCcEEEEEccCCCeE-------EEEEccCCCCCceEEEEeCCCCEEEEEECCC-----eEEEEECCCCCC-----
Confidence 87 56787788876544321 3445666766788899999999999866554 799999832110
Q ss_pred CeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCe
Q 039497 287 PFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR 366 (642)
Q Consensus 287 ~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~ 366 (642)
... +..+...... ...+.|+|+++.|+..+. + ..|.+++...++.
T Consensus 140 ---------~~~----------------~~~~~~h~~~-------v~~~~~~p~~~~l~s~s~-d--~~i~~w~~~~~~~ 184 (345)
T 3fm0_A 140 ---------YEC----------------VSVLNSHTQD-------VKHVVWHPSQELLASASY-D--DTVKLYREEEDDW 184 (345)
T ss_dssp ---------EEE----------------EEEECCCCSC-------EEEEEECSSSSCEEEEET-T--SCEEEEEEETTEE
T ss_pred ---------eEE----------------EEEecCcCCC-------eEEEEECCCCCEEEEEeC-C--CcEEEEEecCCCE
Confidence 000 0000000011 124589999998887664 2 4566667666543
Q ss_pred eEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCC---CC-CccccceEEccccCCCCc
Q 039497 367 WTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDN---NR-EEIPCDVKILTKEETGNN 438 (642)
Q Consensus 367 ~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~~ 438 (642)
..+.. ...+..+.|+|||+.|+..+. ++.+++|++.. .+.... .+ .........+.......+
T Consensus 185 ~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~-------D~~v~iW~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 255 (345)
T 3fm0_A 185 VCCATLEGHESTVWSLAFDPSGQRLASCSD-------DRTVRIWRQYL--PGNEQGVACSGSDPSWKCICTLSGFHSRTI 255 (345)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEET-------TSCEEEEEEEC--TTCTTCCCCC---CEEEEEEEECSSCSSCE
T ss_pred EEEEEecCCCCceEEEEECCCCCEEEEEeC-------CCeEEEecccc--CCCCccceeeccCCccceeEEecCCCCCcE
Confidence 32221 556889999999999988874 78999999865 210000 00 000001112222122567
Q ss_pred cCcEECCCCCeEEEEeCCCCceeEEEEECCCCcccc------ceeeCCCCCCcccceeEecCCC-EEEEEecCCCCCCCC
Q 039497 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG------DIRQLTDGPWIDTMPSWSPKGD-LIAFSSNRHNPDNVE 511 (642)
Q Consensus 439 ~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~------~~~~l~~~~~~~~~~~~spdG~-~l~~~~~~~~~~~~~ 511 (642)
..++|+|++..|+..+.+ ..|.+|+...+..+. .......+...+..++|+|++. .|+..+.++.
T Consensus 256 ~~v~~~~~~~~l~s~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~----- 327 (345)
T 3fm0_A 256 YDIAWCQLTGALATACGD---DAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGE----- 327 (345)
T ss_dssp EEEEECTTTCCEEEEETT---SCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSC-----
T ss_pred EEEEEecCCCEEEEEeCC---CeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCc-----
Confidence 789999999999887743 357777765443100 0111234556778899999985 7777776664
Q ss_pred ceeEEEEeCCCCc
Q 039497 512 AFSLYVIKPDGSG 524 (642)
Q Consensus 512 ~~~l~~~d~~~~~ 524 (642)
|.+|++..++
T Consensus 328 ---v~~W~~~~~~ 337 (345)
T 3fm0_A 328 ---VAFWKYQRPE 337 (345)
T ss_dssp ---EEEEEECC--
T ss_pred ---EEEEEecCCC
Confidence 8999987654
No 54
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.79 E-value=6.5e-18 Score=176.20 Aligned_cols=313 Identities=12% Similarity=0.061 Sum_probs=196.8
Q ss_pred ccccceeecCCcEEEEEEeccC------CceeeEEEEEeec----------CCCCcccCCeecCCCCEEEEEEeecCCCC
Q 039497 244 HCFTPAAFHDGKRLAVATRRKN------RNFRHIEIYDLTL----------NPNFHHYNPFVSANSEFIGYHRFRGESTE 307 (642)
Q Consensus 244 ~~~~~~~SpdG~~l~~~~~~~~------~~~~~i~~~d~~~----------~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 307 (642)
.+..++|||||+.++++....+ .....+++||+.. .+...+..+.|+|||+.|+....++.
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--- 90 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGS--- 90 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSC---
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCe---
Confidence 3567889999984444443323 4556899999832 23344667889999999988765544
Q ss_pred CCcccceEeeccC-CCceeEEee---eCCCccEEcCC-CCEEEEEecCCCceeEEEEECCCCC------eeEEe-----e
Q 039497 308 GQSTIPHLEPVAS-PVKELRMLR---LNGSFPSFSPD-GGLIVFNHDFELNAGIKIAKSDGSK------RWTLI-----K 371 (642)
Q Consensus 308 ~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~spd-g~~l~~~~~~~~~~~l~~~d~~~~~------~~~l~-----~ 371 (642)
..+|...... ....+.... .....+.|+|+ ++.|+.... ...|.++|+..++ ..... .
T Consensus 91 ---v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 164 (416)
T 2pm9_A 91 ---LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGN---NGEIFIWDMNKCTESPSNYTPLTPGQSMSS 164 (416)
T ss_dssp ---EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECS---SSCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred ---EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcC---CCeEEEEECCCCccccccccccccccccCC
Confidence 2333222100 111221111 12256789999 676665443 4678888988775 22211 1
Q ss_pred cCCceeeeeecCC-CEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC-----CCCccCcEECC
Q 039497 372 DRTAFYNSWSPTE-KHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE-----TGNNAFPSCSP 445 (642)
Q Consensus 372 ~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~Sp 445 (642)
...+..+.|+|++ +.|+... .++.+++|++.. +. ....+.... ...+..+.|+|
T Consensus 165 ~~~v~~~~~~~~~~~~l~~~~-------~dg~v~iwd~~~--------~~-----~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 165 VDEVISLAWNQSLAHVFASAG-------SSNFASIWDLKA--------KK-----EVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp SCCCCEEEECSSCTTEEEEES-------SSSCEEEEETTT--------TE-----EEEEECCCCCSSCCCCCEEEEEECS
T ss_pred CCCeeEEEeCCCCCcEEEEEc-------CCCCEEEEECCC--------CC-----cceEEeccccccccCCceEEEEECC
Confidence 4568899999994 5555443 377899998854 12 334443331 25677899999
Q ss_pred CCC-eEEEEeCCCCceeEEEEECCCCccccceeeCC-CCCCcccceeEec-CCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497 446 DGK-FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMPSWSP-KGDLIAFSSNRHNPDNVEAFSLYVIKPDG 522 (642)
Q Consensus 446 Dg~-~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~l~~~d~~~ 522 (642)
+|. .|+..+.......|.+||+.+++. ....+. .+...+..+.|+| ++++|+..+.++. |++||+.+
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~--------v~~wd~~~ 294 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANT--PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT--------VLLWNPES 294 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTS--CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE--------EEEECSSS
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCC--CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC--------EEEeeCCC
Confidence 985 455554332233789999987632 034455 5666778899999 8998888887654 99999988
Q ss_pred CceEEeeecCCCCCCCcccccccceEEcCCC-CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc-C---
Q 039497 523 SGLRRIHVAGPEGSGDVDRERINHVCFSADG-EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT-W--- 597 (642)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt-~--- 597 (642)
++...... .+.. .+..+.|+||+ +.|+..+.++ .|.+|++......... .
T Consensus 295 ~~~~~~~~-~~~~-------~v~~~~~s~~~~~~l~s~~~d~-----------------~i~iw~~~~~~~~~~~~~~~~ 349 (416)
T 2pm9_A 295 AEQLSQFP-ARGN-------WCFKTKFAPEAPDLFACASFDN-----------------KIEVQTLQNLTNTLDEQETET 349 (416)
T ss_dssp CCEEEEEE-CSSS-------CCCCEEECTTCTTEEEECCSSS-----------------EEEEEESCCCCCSSCC-----
T ss_pred Cccceeec-CCCC-------ceEEEEECCCCCCEEEEEecCC-----------------cEEEEEccCCCCCcccccccc
Confidence 76654433 3333 57889999999 6665555443 6778887765422110 0
Q ss_pred --------------------------------CCCCCCCcEEecCCceEEeecCC
Q 039497 598 --------------------------------NGYENGTPAWHPGNQLDLGKLRL 620 (642)
Q Consensus 598 --------------------------------~~~~~~~~~~s~dg~~~~~~~~~ 620 (642)
....+..++|||||+++++....
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d 404 (416)
T 2pm9_A 350 KQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDG 404 (416)
T ss_dssp -----------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTS
T ss_pred cccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCC
Confidence 12233578999999999876543
No 55
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.79 E-value=8.7e-17 Score=164.60 Aligned_cols=194 Identities=15% Similarity=0.109 Sum_probs=136.8
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (642)
..+|||||++++..+. .....|.++|+.+++...... ...+..+.|||||+.|+..+ +..+.+|....
T Consensus 138 ~v~fSpDg~~la~as~-~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s--------~~~~~~~~~~~-- 206 (365)
T 4h5i_A 138 LVYISREGTVAAIASS-KVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYIT--------GSSLEVISTVT-- 206 (365)
T ss_dssp EEEECTTSSCEEEEES-CSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEEC--------SSCEEEEETTT--
T ss_pred EEEEcCCCCEEEEEEC-CCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEecc--------ceeEEEEEecc--
Confidence 3589999999888664 334678999998887654443 66789999999999998876 34566665433
Q ss_pred CCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCC-ceeEEEEECCCCccc-cceeeCCCCCCccccee
Q 039497 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG-HKNLFVLDAVNGEFN-GDIRQLTDGPWIDTMPS 490 (642)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g-~~~l~~~d~~~g~~~-~~~~~l~~~~~~~~~~~ 490 (642)
+. . ............+..++|+|||+.++..+...+ ...++.|++..+... .....+..+...+..++
T Consensus 207 ------~~-~---~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~ 276 (365)
T 4h5i_A 207 ------GS-C---IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMD 276 (365)
T ss_dssp ------CC-E---EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEE
T ss_pred ------Cc-c---eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEE
Confidence 12 0 112222222245677899999999988775433 346788888765420 01233455556678899
Q ss_pred EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
|||||++|+..+.++. |.+||+.+++.......++.. .+..++|||||++|+..+.++
T Consensus 277 ~Spdg~~lasgs~D~~--------V~iwd~~~~~~~~~~~~gH~~-------~V~~v~fSpdg~~laS~S~D~ 334 (365)
T 4h5i_A 277 VDMKGELAVLASNDNS--------IALVKLKDLSMSKIFKQAHSF-------AITEVTISPDSTYVASVSAAN 334 (365)
T ss_dssp ECTTSCEEEEEETTSC--------EEEEETTTTEEEEEETTSSSS-------CEEEEEECTTSCEEEEEETTS
T ss_pred ECCCCCceEEEcCCCE--------EEEEECCCCcEEEEecCcccC-------CEEEEEECCCCCEEEEEeCCC
Confidence 9999999999988765 999999887654433335555 688999999999999888776
No 56
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.79 E-value=1.2e-16 Score=162.94 Aligned_cols=279 Identities=13% Similarity=0.046 Sum_probs=192.5
Q ss_pred eeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceE
Q 039497 236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHL 315 (642)
Q Consensus 236 ~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~ 315 (642)
..+..+...+..++|+|||++|+....++ .+.+||.... +.+...
T Consensus 58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg-----~v~vWd~~~~--------------~~~~~~---------------- 102 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDG-----KVIVWDSFTT--------------NKEHAV---------------- 102 (354)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTC--------------CEEEEE----------------
T ss_pred EEecCCCCeEEEEEECCCCCEEEEEeCCC-----eEEEEECCCC--------------CcceEE----------------
Confidence 44566666788889999999888865544 7888886221 111000
Q ss_pred eeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCC-------eeEEee-cCCceeeeeecCCCEE
Q 039497 316 EPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK-------RWTLIK-DRTAFYNSWSPTEKHV 387 (642)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~-------~~~l~~-~~~~~~~~~spdg~~l 387 (642)
. ..........|+|+|+.|+.... + ..+.++++.... ...+.. ...+..+.|+|+++.|
T Consensus 103 -~---------~~~~~v~~~~~sp~g~~lasg~~-d--~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 169 (354)
T 2pbi_B 103 -T---------MPCTWVMACAYAPSGCAIACGGL-D--NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQI 169 (354)
T ss_dssp -E---------CSSSCCCEEEECTTSSEEEEEST-T--SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEE
T ss_pred -e---------cCCCCEEEEEECCCCCEEEEeeC-C--CCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEE
Confidence 0 00011234589999998887654 3 455556554321 122222 5668889999999999
Q ss_pred EEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECC--CCCeEEEEeCCCCceeEEEE
Q 039497 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSP--DGKFLVFRSGRSGHKNLFVL 465 (642)
Q Consensus 388 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~g~~~l~~~ 465 (642)
+..+. ++.+++|++.. +. ....+..+. ..+..+.|+| +|+.|+..+. +..|.+|
T Consensus 170 ~t~s~-------D~~v~lwd~~~--------~~-----~~~~~~~h~-~~v~~~~~~~~~~g~~l~sgs~---Dg~v~~w 225 (354)
T 2pbi_B 170 LTASG-------DGTCALWDVES--------GQ-----LLQSFHGHG-ADVLCLDLAPSETGNTFVSGGC---DKKAMVW 225 (354)
T ss_dssp EEEET-------TSEEEEEETTT--------CC-----EEEEEECCS-SCEEEEEECCCSSCCEEEEEET---TSCEEEE
T ss_pred EEEeC-------CCcEEEEeCCC--------Ce-----EEEEEcCCC-CCeEEEEEEeCCCCCEEEEEeC---CCeEEEE
Confidence 88774 78999999855 22 445555554 5666677776 5778877663 3479999
Q ss_pred ECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-CCCCCCcccccc
Q 039497 466 DAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEGSGDVDRERI 544 (642)
Q Consensus 466 d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~~~~~~ 544 (642)
|+.+++. +..+..+...+..++|+|+|+.|+..+.++. |.+||+..++...+.... ... .+
T Consensus 226 d~~~~~~---~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~--------v~lwd~~~~~~~~~~~~~~~~~-------~~ 287 (354)
T 2pbi_B 226 DMRSGQC---VQAFETHESDVNSVRYYPSGDAFASGSDDAT--------CRLYDLRADREVAIYSKESIIF-------GA 287 (354)
T ss_dssp ETTTCCE---EEEECCCSSCEEEEEECTTSSEEEEEETTSC--------EEEEETTTTEEEEEECCTTCCS-------CE
T ss_pred ECCCCcE---EEEecCCCCCeEEEEEeCCCCEEEEEeCCCe--------EEEEECCCCcEEEEEcCCCccc-------ce
Confidence 9998886 5667767777888999999999998887765 999999876554433211 111 35
Q ss_pred cceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497 545 NHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 545 ~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
..+.|+|||+.|+..+.++ .|.+||+..+. +..+..+...+..++|||||++|++....+
T Consensus 288 ~~~~~s~~g~~l~~g~~d~-----------------~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~ 348 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDY-----------------TINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH 348 (354)
T ss_dssp EEEEECTTSSEEEEEETTS-----------------CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred eEEEEeCCCCEEEEEECCC-----------------cEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCC
Confidence 6789999999888877654 78888986554 566777777788999999999998865443
No 57
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.79 E-value=1.1e-16 Score=162.24 Aligned_cols=278 Identities=12% Similarity=0.015 Sum_probs=193.8
Q ss_pred eeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceE
Q 039497 236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHL 315 (642)
Q Consensus 236 ~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~ 315 (642)
..+..+...+..++|+|||++|+....++ .+.+||+... +.+....
T Consensus 49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg-----~v~iWd~~~~--------------~~~~~~~--------------- 94 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDG-----KLIIWDSYTT--------------NKVHAIP--------------- 94 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTT-----EEEEEETTTC--------------CEEEEEE---------------
T ss_pred eeecCCCCceEEEEECCCCCEEEEEeCCC-----cEEEEECCCC--------------CcceEee---------------
Confidence 44566666788889999999888865544 7888886221 1111110
Q ss_pred eeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCe--eE---Eee-cCCceeeeeecCCCEEEE
Q 039497 316 EPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR--WT---LIK-DRTAFYNSWSPTEKHVIY 389 (642)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~--~~---l~~-~~~~~~~~~spdg~~l~~ 389 (642)
..... .....|+|+|+.|+..+. ...+.++++...+. .. +.. ...+..+.|+++++ |+.
T Consensus 95 ----~~~~~-------v~~~~~s~~~~~l~s~~~---d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s 159 (340)
T 1got_B 95 ----LRSSW-------VMTCAYAPSGNYVACGGL---DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVT 159 (340)
T ss_dssp ----CSSSC-------EEEEEECTTSSEEEEEET---TCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEE
T ss_pred ----cCCcc-------EEEEEECCCCCEEEEEeC---CCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEE
Confidence 00000 124589999998887654 35777888876532 11 111 45677889998876 555
Q ss_pred EEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC
Q 039497 390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN 469 (642)
Q Consensus 390 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~ 469 (642)
.+ .++.+++|++.. +. ....+..+. ..+..+.|+||++.|+..+. +..|.+||+.+
T Consensus 160 ~s-------~d~~i~~wd~~~--------~~-----~~~~~~~h~-~~v~~~~~~~~~~~l~sg~~---d~~v~~wd~~~ 215 (340)
T 1got_B 160 SS-------GDTTCALWDIET--------GQ-----QTTTFTGHT-GDVMSLSLAPDTRLFVSGAC---DASAKLWDVRE 215 (340)
T ss_dssp EE-------TTSCEEEEETTT--------TE-----EEEEECCCS-SCEEEEEECTTSSEEEEEET---TSCEEEEETTT
T ss_pred EE-------CCCcEEEEECCC--------Cc-----EEEEEcCCC-CceEEEEECCCCCEEEEEeC---CCcEEEEECCC
Confidence 54 378899999854 22 445555555 67888999999998887763 34799999998
Q ss_pred CccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee-cCCCCCCCcccccccceE
Q 039497 470 GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV-AGPEGSGDVDRERINHVC 548 (642)
Q Consensus 470 g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~ 548 (642)
++. ...+..+...+..++|+|+|++|+..+.++. |.+||+..++...... ..... .+..+.
T Consensus 216 ~~~---~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~--------v~iwd~~~~~~~~~~~~~~~~~-------~v~~~~ 277 (340)
T 1got_B 216 GMC---RQTFTGHESDINAICFFPNGNAFATGSDDAT--------CRLFDLRADQELMTYSHDNIIC-------GITSVS 277 (340)
T ss_dssp CSE---EEEECCCSSCEEEEEECTTSSEEEEEETTSC--------EEEEETTTTEEEEEECCTTCCS-------CEEEEE
T ss_pred Cee---EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc--------EEEEECCCCcEEEEEccCCccc-------ceEEEE
Confidence 876 5667777777888999999999998887765 9999998765433222 11111 467889
Q ss_pred EcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497 549 FSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 549 ~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
|+|||+.|+..+.++ .|.+||...+. ...+..+...+..++|+|||++|++....+
T Consensus 278 ~s~~g~~l~~g~~d~-----------------~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 334 (340)
T 1got_B 278 FSKSGRLLLAGYDDF-----------------NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334 (340)
T ss_dssp ECTTSSEEEEEETTS-----------------EEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred ECCCCCEEEEECCCC-----------------eEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCc
Confidence 999999988877654 78889986655 556667777788999999999998865443
No 58
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.79 E-value=2.2e-17 Score=168.58 Aligned_cols=272 Identities=11% Similarity=-0.028 Sum_probs=174.5
Q ss_pred CCCCccccceeecCCcEEEEEEeccCCc-eeeEEEEEeec------------CCCCcccCCeecCCCCEEEEEEeecCCC
Q 039497 240 PPGVHCFTPAAFHDGKRLAVATRRKNRN-FRHIEIYDLTL------------NPNFHHYNPFVSANSEFIGYHRFRGEST 306 (642)
Q Consensus 240 ~~~~~~~~~~~SpdG~~l~~~~~~~~~~-~~~i~~~d~~~------------~~~~~~~~~~~spDg~~l~~~~~~~~~~ 306 (642)
.+...+..++|||||++|+......... ...+++|+... .+...+...+|+||++.++ ...++.
T Consensus 40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~-~s~dg~-- 116 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILV-ASDSGA-- 116 (357)
T ss_dssp CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEE-EETTSC--
T ss_pred cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEE-EECCCE--
Confidence 3455678899999999999876543211 34688887622 2334466789999987554 333222
Q ss_pred CCCcccceEeeccCCCceeEEe--ee--CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeee
Q 039497 307 EGQSTIPHLEPVASPVKELRML--RL--NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSW 380 (642)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~ 380 (642)
..+|-............. .. ....+.|+|||++|+.... ...|.++|+.+++...... ...+..+.|
T Consensus 117 ----v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~---dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~ 189 (357)
T 4g56_B 117 ----VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK---DFSVKVWDLSQKAVLKSYNAHSSEVNCVAA 189 (357)
T ss_dssp ----EEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEET---TSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred ----EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC---CCeEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 333422211111111111 11 1245689999999887654 3578888998877554443 566888999
Q ss_pred ecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc--cccCCCCccCcEECCCCCeEEEEeCCCC
Q 039497 381 SPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL--TKEETGNNAFPSCSPDGKFLVFRSGRSG 458 (642)
Q Consensus 381 spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~SpDg~~l~~~~~~~g 458 (642)
+|+++.++++.. .++.+++|++.. +. ....+ .... ..+..++|+|++..++.....+
T Consensus 190 s~~~~~~~~s~~------~dg~v~~wd~~~--------~~-----~~~~~~~~~~~-~~v~~v~~sp~~~~~la~g~~d- 248 (357)
T 4g56_B 190 CPGKDTIFLSCG------EDGRILLWDTRK--------PK-----PATRIDFCASD-TIPTSVTWHPEKDDTFACGDET- 248 (357)
T ss_dssp CTTCSSCEEEEE------TTSCEEECCTTS--------SS-----CBCBCCCTTCC-SCEEEEEECTTSTTEEEEEESS-
T ss_pred ccCCCceeeeec------cCCceEEEECCC--------Cc-----eeeeeeecccc-ccccchhhhhcccceEEEeecc-
Confidence 999875544442 378899998754 12 22222 2222 4567789999976555444333
Q ss_pred ceeEEEEECCCCccccceeeCCCCCCcccceeEecCCC-EEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCC
Q 039497 459 HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD-LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSG 537 (642)
Q Consensus 459 ~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~-~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 537 (642)
..|.+||+.+++. +..+..+...+..++|+|+|+ +|+..+.++. |++||+++++..... ++..
T Consensus 249 -~~i~~wd~~~~~~---~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~--------i~iwd~~~~~~~~~~--~H~~-- 312 (357)
T 4g56_B 249 -GNVSLVNIKNPDS---AQTSAVHSQNITGLAYSYHSSPFLASISEDCT--------VAVLDADFSEVFRDL--SHRD-- 312 (357)
T ss_dssp -SCEEEEESSCGGG---CEEECCCSSCEEEEEECSSSSCCEEEEETTSC--------EEEECTTSCEEEEEC--CCSS--
T ss_pred -cceeEEECCCCcE---eEEEeccceeEEEEEEcCCCCCEEEEEeCCCE--------EEEEECCCCcEeEEC--CCCC--
Confidence 3799999998886 667776777788899999985 4555665554 999999887665433 4555
Q ss_pred CcccccccceEEcC-CCCEEEEEEecC
Q 039497 538 DVDRERINHVCFSA-DGEWLLFTANLG 563 (642)
Q Consensus 538 ~~~~~~~~~~~~S~-Dg~~l~~~~~~~ 563 (642)
.+..++||| |++.|+..+.++
T Consensus 313 -----~V~~vafsP~d~~~l~s~s~Dg 334 (357)
T 4g56_B 313 -----FVTGVAWSPLDHSKFTTVGWDH 334 (357)
T ss_dssp -----CEEEEEECSSSTTEEEEEETTS
T ss_pred -----CEEEEEEeCCCCCEEEEEcCCC
Confidence 678999998 888888777654
No 59
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.78 E-value=2.3e-16 Score=160.78 Aligned_cols=285 Identities=14% Similarity=0.098 Sum_probs=193.3
Q ss_pred eEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC---CcceEeeCCeEEEEE
Q 039497 132 FTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG---GWPTWSGDSTIYFHR 208 (642)
Q Consensus 132 ~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~wspdg~~~~~~ 208 (642)
.+.|..+.......+|||||++||..+.+. .|.+|+..+++......... ...+|+|+|..+++.
T Consensus 57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg------------~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg 124 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDG------------KVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACG 124 (354)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTS------------EEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEE
T ss_pred EEEecCCCCeEEEEEECCCCCEEEEEeCCC------------eEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEe
Confidence 455666666677899999999999988776 78999988877655444332 245999999988887
Q ss_pred ecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCe
Q 039497 209 QADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPF 288 (642)
Q Consensus 209 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 288 (642)
..++...+|.+....... .......+..+...+...+|+|+++.|+....++ .+.+||+...
T Consensus 125 -~~d~~i~v~~~~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~-----~v~lwd~~~~--------- 186 (354)
T 2pbi_B 125 -GLDNKCSVYPLTFDKNEN---MAAKKKSVAMHTNYLSACSFTNSDMQILTASGDG-----TCALWDVESG--------- 186 (354)
T ss_dssp -STTSEEEEEECCCCTTCC---SGGGCEEEEECSSCEEEEEECSSSSEEEEEETTS-----EEEEEETTTC---------
T ss_pred -eCCCCEEEEEEecccccc---ccccceeeeccCCcEEEEEEeCCCCEEEEEeCCC-----cEEEEeCCCC---------
Confidence 677877777665432100 0002234444555677788999999988865544 8999987321
Q ss_pred ecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcC--CCCEEEEEecCCCceeEEEEECCCCCe
Q 039497 289 VSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSP--DGGLIVFNHDFELNAGIKIAKSDGSKR 366 (642)
Q Consensus 289 ~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~l~~~d~~~~~~ 366 (642)
+.+... .+....+ ....|+| +|+.|+..+. ...|.++|+.+++.
T Consensus 187 -----~~~~~~-------------------~~h~~~v-------~~~~~~~~~~g~~l~sgs~---Dg~v~~wd~~~~~~ 232 (354)
T 2pbi_B 187 -----QLLQSF-------------------HGHGADV-------LCLDLAPSETGNTFVSGGC---DKKAMVWDMRSGQC 232 (354)
T ss_dssp -----CEEEEE-------------------ECCSSCE-------EEEEECCCSSCCEEEEEET---TSCEEEEETTTCCE
T ss_pred -----eEEEEE-------------------cCCCCCe-------EEEEEEeCCCCCEEEEEeC---CCeEEEEECCCCcE
Confidence 111110 0000011 1234555 5777777654 36788889988776
Q ss_pred eEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC-CCCccCcEE
Q 039497 367 WTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE-TGNNAFPSC 443 (642)
Q Consensus 367 ~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~ 443 (642)
..... ...+..+.|+|+++.|+..+. ++.+++|++.. .. ....+.... ......+.|
T Consensus 233 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~-------D~~v~lwd~~~--------~~-----~~~~~~~~~~~~~~~~~~~ 292 (354)
T 2pbi_B 233 VQAFETHESDVNSVRYYPSGDAFASGSD-------DATCRLYDLRA--------DR-----EVAIYSKESIIFGASSVDF 292 (354)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEET-------TSCEEEEETTT--------TE-----EEEEECCTTCCSCEEEEEE
T ss_pred EEEecCCCCCeEEEEEeCCCCEEEEEeC-------CCeEEEEECCC--------Cc-----EEEEEcCCCcccceeEEEE
Confidence 55443 566889999999999888774 78999999854 11 222222211 123556899
Q ss_pred CCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCC
Q 039497 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHN 506 (642)
Q Consensus 444 SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~ 506 (642)
+|||++|+..+. +..|.+||+.+++. +..+..+...+..++|+|||++|+..+.++.
T Consensus 293 s~~g~~l~~g~~---d~~i~vwd~~~~~~---~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~ 349 (354)
T 2pbi_B 293 SLSGRLLFAGYN---DYTINVWDVLKGSR---VSILFGHENRVSTLRVSPDGTAFCSGSWDHT 349 (354)
T ss_dssp CTTSSEEEEEET---TSCEEEEETTTCSE---EEEECCCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred eCCCCEEEEEEC---CCcEEEEECCCCce---EEEEECCCCcEEEEEECCCCCEEEEEcCCCC
Confidence 999999887764 34799999988876 6677777778889999999999998887653
No 60
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.78 E-value=1.6e-16 Score=161.03 Aligned_cols=287 Identities=13% Similarity=0.067 Sum_probs=193.1
Q ss_pred eEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---cceEeeCCeEEEEE
Q 039497 132 FTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---WPTWSGDSTIYFHR 208 (642)
Q Consensus 132 ~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---~~~wspdg~~~~~~ 208 (642)
...|..+.......+|||||++||..+.+. .|.+|++.+++.......+.. ..+|+|+|.++++.
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg------------~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 115 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDG------------KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTT------------EEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred heeecCCCCceEEEEECCCCCEEEEEeCCC------------cEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEE
Confidence 344555666667789999999999988766 799999988876554443332 35899999888887
Q ss_pred ecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCe
Q 039497 209 QADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPF 288 (642)
Q Consensus 209 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 288 (642)
..++...||.+....+.. .....+..+...+....|+++++ |+....+ ..+.+||+...
T Consensus 116 -~~d~~v~iw~~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d-----~~i~~wd~~~~--------- 174 (340)
T 1got_B 116 -GLDNICSIYNLKTREGNV-----RVSRELAGHTGYLSCCRFLDDNQ-IVTSSGD-----TTCALWDIETG--------- 174 (340)
T ss_dssp -ETTCEEEEEETTTCSBSC-----EEEEEEECCSSCEEEEEEEETTE-EEEEETT-----SCEEEEETTTT---------
T ss_pred -eCCCeEEEEECccCCCcc-----eeEEEecCCCccEEEEEECCCCc-EEEEECC-----CcEEEEECCCC---------
Confidence 567766666543322100 01233445555666778888886 5554433 37888887321
Q ss_pred ecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeE
Q 039497 289 VSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWT 368 (642)
Q Consensus 289 ~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~ 368 (642)
+.+.. +.+.... .....|+|+++.++..+. ...|.++|+..+....
T Consensus 175 -----~~~~~-------------------~~~h~~~-------v~~~~~~~~~~~l~sg~~---d~~v~~wd~~~~~~~~ 220 (340)
T 1got_B 175 -----QQTTT-------------------FTGHTGD-------VMSLSLAPDTRLFVSGAC---DASAKLWDVREGMCRQ 220 (340)
T ss_dssp -----EEEEE-------------------ECCCSSC-------EEEEEECTTSSEEEEEET---TSCEEEEETTTCSEEE
T ss_pred -----cEEEE-------------------EcCCCCc-------eEEEEECCCCCEEEEEeC---CCcEEEEECCCCeeEE
Confidence 11100 0000001 124589999998777654 3678888998876554
Q ss_pred Eee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC-CCCccCcEECC
Q 039497 369 LIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE-TGNNAFPSCSP 445 (642)
Q Consensus 369 l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~Sp 445 (642)
... ...+..+.|+|+++.|+..+. ++.+++|++.. +. ....+.... ...+..+.|+|
T Consensus 221 ~~~~h~~~v~~v~~~p~~~~l~s~s~-------d~~v~iwd~~~--------~~-----~~~~~~~~~~~~~v~~~~~s~ 280 (340)
T 1got_B 221 TFTGHESDINAICFFPNGNAFATGSD-------DATCRLFDLRA--------DQ-----ELMTYSHDNIICGITSVSFSK 280 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEET-------TSCEEEEETTT--------TE-----EEEEECCTTCCSCEEEEEECT
T ss_pred EEcCCcCCEEEEEEcCCCCEEEEEcC-------CCcEEEEECCC--------Cc-----EEEEEccCCcccceEEEEECC
Confidence 433 556889999999999988774 78899999854 11 222222111 12466789999
Q ss_pred CCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEe
Q 039497 446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIK 519 (642)
Q Consensus 446 Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d 519 (642)
||++|+..+. +..|.+||+.+++. +..+..+...+..++|+|||++|+..+.++. |.+||
T Consensus 281 ~g~~l~~g~~---d~~i~vwd~~~~~~---~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~--------i~iWd 340 (340)
T 1got_B 281 SGRLLLAGYD---DFNCNVWDALKADR---AGVLAGHDNRVSCLGVTDDGMAVATGSWDSF--------LKIWN 340 (340)
T ss_dssp TSSEEEEEET---TSEEEEEETTTCCE---EEEEECCSSCEEEEEECTTSSCEEEEETTSC--------EEEEC
T ss_pred CCCEEEEECC---CCeEEEEEcccCcE---eeEeecCCCcEEEEEEcCCCCEEEEEcCCcc--------EEecC
Confidence 9999987774 34899999988876 5677777778888999999999998887764 77775
No 61
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.78 E-value=5.8e-17 Score=169.32 Aligned_cols=308 Identities=13% Similarity=0.046 Sum_probs=194.9
Q ss_pred cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEE
Q 039497 195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIY 274 (642)
Q Consensus 195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~ 274 (642)
.++|+|||+.+++. ..++ .++.++..++. ....+..+ .......++|||++|+.....+ .+.+|
T Consensus 61 ~~~~s~~g~~l~~~-~~d~--~v~i~d~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg-----~i~iw 124 (420)
T 3vl1_A 61 GNTFEKVGSHLYKA-RLDG--HDFLFNTIIRD-------GSKMLKRA-DYTAVDTAKLQMRRFILGTTEG-----DIKVL 124 (420)
T ss_dssp TCEEEEEETTEEEE-EETT--EEEEEECCSEE-------TTTTSCSC-CEEEEEEECSSSCEEEEEETTS-----CEEEE
T ss_pred ceeeeecCCeEEEE-EcCC--cEEEEEecccc-------eeeEEecC-CceEEEEEecCCCEEEEEECCC-----CEEEE
Confidence 57999999777766 3466 55556665542 11122222 2223345789999988865443 78888
Q ss_pred EeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCce
Q 039497 275 DLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA 354 (642)
Q Consensus 275 d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 354 (642)
|+... + + ...+...... ...+.|+|+|+.|+..+. ..
T Consensus 125 d~~~~--------------~-~------------------~~~~~~h~~~-------v~~~~~~~~~~~l~s~s~---d~ 161 (420)
T 3vl1_A 125 DSNFN--------------L-Q------------------REIDQAHVSE-------ITKLKFFPSGEALISSSQ---DM 161 (420)
T ss_dssp CTTSC--------------E-E------------------EEETTSSSSC-------EEEEEECTTSSEEEEEET---TS
T ss_pred eCCCc--------------c-e------------------eeecccccCc-------cEEEEECCCCCEEEEEeC---CC
Confidence 76211 0 0 0000111111 124589999998887654 36
Q ss_pred eEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc
Q 039497 355 GIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK 432 (642)
Q Consensus 355 ~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 432 (642)
.|.++|+..++...... ...+..+.|+|+++.|+..+. ++.+++|++.. +. ....+..
T Consensus 162 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-------d~~v~iwd~~~--------~~-----~~~~~~~ 221 (420)
T 3vl1_A 162 QLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL-------DGTIRLWECGT--------GT-----TIHTFNR 221 (420)
T ss_dssp EEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET-------TSCEEEEETTT--------TE-----EEEEECB
T ss_pred eEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC-------CCcEEEeECCC--------Cc-----eeEEeec
Confidence 78899998776544333 567889999999999988774 67899998754 11 2222221
Q ss_pred c-----------------------CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccc
Q 039497 433 E-----------------------ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTM 488 (642)
Q Consensus 433 ~-----------------------~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~ 488 (642)
. ....+..+.|+|||++|+..+.. ..|.+||+.+++. +..+.. +...+..
T Consensus 222 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~---~~~~~~~~~~~v~~ 295 (420)
T 3vl1_A 222 KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS---GVITVHNVFSKEQ---TIQLPSKFTCSCNS 295 (420)
T ss_dssp TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT---SCEEEEETTTCCE---EEEECCTTSSCEEE
T ss_pred CCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC---CeEEEEECCCCce---eEEcccccCCCcee
Confidence 0 01345668899999999877643 3799999998875 444443 4456788
Q ss_pred eeEecCCC-EEEEEecCCCCCCCCceeEEEEeCCCCce--EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCc
Q 039497 489 PSWSPKGD-LIAFSSNRHNPDNVEAFSLYVIKPDGSGL--RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV 565 (642)
Q Consensus 489 ~~~spdG~-~l~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~ 565 (642)
++|+|+|+ +|+..+.++. |++||+.+++. ..+.. .... .+..+ ++++++.|+..+.++
T Consensus 296 ~~~~~~~~~~l~~g~~dg~--------i~vwd~~~~~~~~~~~~~-~~~~-------~v~~~-~~~~~~~l~s~~~d~-- 356 (420)
T 3vl1_A 296 LTVDGNNANYIYAGYENGM--------LAQWDLRSPECPVGEFLI-NEGT-------PINNV-YFAAGALFVSSGFDT-- 356 (420)
T ss_dssp EEECSSCTTEEEEEETTSE--------EEEEETTCTTSCSEEEEE-STTS-------CEEEE-EEETTEEEEEETTTE--
T ss_pred EEEeCCCCCEEEEEeCCCe--------EEEEEcCCCcCchhhhhc-cCCC-------CceEE-EeCCCCEEEEecCCc--
Confidence 99999999 7777776553 99999987643 33332 2222 34445 556888776665443
Q ss_pred ccCCCCCCCCCCCCCcEEEEEcCC----------CceeeccCCCCCCCCcEEecCCc---eEEeecCCC
Q 039497 566 MAEPVSWPNQFQPYGDLYVVKLDG----------SGLRRLTWNGYENGTPAWHPGNQ---LDLGKLRLE 621 (642)
Q Consensus 566 ~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~lt~~~~~~~~~~~s~dg~---~~~~~~~~~ 621 (642)
.|.+|++.. .....+..+...+..++|+||++ .+++..+.|
T Consensus 357 ---------------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g 410 (420)
T 3vl1_A 357 ---------------SIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNN 410 (420)
T ss_dssp ---------------EEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTT
T ss_pred ---------------cEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCc
Confidence 677777654 22334445566778999999998 565554443
No 62
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.78 E-value=8.2e-17 Score=167.67 Aligned_cols=282 Identities=13% Similarity=0.091 Sum_probs=199.3
Q ss_pred ecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---cceEeeCCeEEEEEec
Q 039497 134 RLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---WPTWSGDSTIYFHRQA 210 (642)
Q Consensus 134 ~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---~~~wspdg~~~~~~~~ 210 (642)
.+..+.......+|+|||++||..+.+. .|.+|++.+++..+....+.. .++|+|++.++++. .
T Consensus 103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg------------~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sg-s 169 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFSVMVSASEDA------------TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASC-S 169 (410)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSS------------CEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEE-E
T ss_pred eecccCCcEEEEEEcCCCCEEEEEeCCC------------eEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEE-e
Confidence 3445555567789999999999988766 799999999886665543332 45999999988887 5
Q ss_pred CCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeec
Q 039497 211 DDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVS 290 (642)
Q Consensus 211 ~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~s 290 (642)
.++...||. ..++. ....+..+...+..++|+|+|++|+....++ .+.+||+...
T Consensus 170 ~D~~i~iwd--~~~~~-------~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~-----~i~~wd~~~~----------- 224 (410)
T 1vyh_C 170 ADMTIKLWD--FQGFE-------CIRTMHGHDHNVSSVSIMPNGDHIVSASRDK-----TIKMWEVQTG----------- 224 (410)
T ss_dssp TTSCCCEEE--TTSSC-------EEECCCCCSSCEEEEEECSSSSEEEEEETTS-----EEEEEETTTC-----------
T ss_pred CCCeEEEEe--CCCCc-------eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCC-----eEEEEECCCC-----------
Confidence 678666664 45542 3445556666788899999999998865544 8999998321
Q ss_pred CCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEe
Q 039497 291 ANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLI 370 (642)
Q Consensus 291 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~ 370 (642)
+.+... .+....+ ....++|+|+.|+..+. ...|.++++.+++.....
T Consensus 225 ---~~~~~~-------------------~~h~~~v-------~~~~~~~~g~~l~s~s~---D~~v~vwd~~~~~~~~~~ 272 (410)
T 1vyh_C 225 ---YCVKTF-------------------TGHREWV-------RMVRPNQDGTLIASCSN---DQTVRVWVVATKECKAEL 272 (410)
T ss_dssp ---CEEEEE-------------------ECCSSCE-------EEEEECTTSSEEEEEET---TSCEEEEETTTCCEEEEE
T ss_pred ---cEEEEE-------------------eCCCccE-------EEEEECCCCCEEEEEcC---CCeEEEEECCCCceeeEe
Confidence 111110 0000011 13478999998877654 357888888877655443
Q ss_pred e--cCCceeeeeecC--------------------CCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceE
Q 039497 371 K--DRTAFYNSWSPT--------------------EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVK 428 (642)
Q Consensus 371 ~--~~~~~~~~~spd--------------------g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 428 (642)
. ...+..+.|+|+ |..|+..+. ++.+++|++.. +. ...
T Consensus 273 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~-------D~~i~iwd~~~--------~~-----~~~ 332 (410)
T 1vyh_C 273 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR-------DKTIKMWDVST--------GM-----CLM 332 (410)
T ss_dssp CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET-------TSEEEEEETTT--------TE-----EEE
T ss_pred cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC-------CCeEEEEECCC--------Cc-----eEE
Confidence 3 556788899997 556766653 78899999854 22 445
Q ss_pred EccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCC
Q 039497 429 ILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD 508 (642)
Q Consensus 429 ~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~ 508 (642)
.+..+. ..+..+.|+|+|++|+..+. +..|.+||+.+++. +..+..+...+..++|+|++++|+..+.++.
T Consensus 333 ~~~~h~-~~v~~v~~~~~g~~l~s~s~---D~~i~vwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~-- 403 (410)
T 1vyh_C 333 TLVGHD-NWVRGVLFHSGGKFILSCAD---DKTLRVWDYKNKRC---MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT-- 403 (410)
T ss_dssp EEECCS-SCEEEEEECSSSSCEEEEET---TTEEEEECCTTSCC---CEEEECCSSCEEEEEECSSSSCEEEEETTSE--
T ss_pred EEECCC-CcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCce---EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCc--
Confidence 555555 67788999999999987763 34899999988876 6777777777889999999999988887754
Q ss_pred CCCceeEEEEeC
Q 039497 509 NVEAFSLYVIKP 520 (642)
Q Consensus 509 ~~~~~~l~~~d~ 520 (642)
|.+|++
T Consensus 404 ------i~vW~~ 409 (410)
T 1vyh_C 404 ------VKVWEC 409 (410)
T ss_dssp ------EEEEC-
T ss_pred ------EEEEeC
Confidence 788775
No 63
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.78 E-value=5.2e-17 Score=181.14 Aligned_cols=308 Identities=13% Similarity=0.070 Sum_probs=190.4
Q ss_pred ccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCC-------ccCCceeCCCCcEEEEEecCCCCCCCC
Q 039497 95 RPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGV-------VDYSPSVSYSGKFIAVASYESRPWPGE 167 (642)
Q Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~-------~~~~~~~SPDG~~la~~~~~~~~~~~~ 167 (642)
.|..+|++++|........ ...||+++..+++.++|+.... ....++|||||++|||..+..
T Consensus 74 ~p~~dG~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~------ 142 (695)
T 2bkl_A 74 TPSRRNGRFFYVRTHKDKE-----KAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPN------ 142 (695)
T ss_dssp CCEEETTEEEEEEECTTCS-----SCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEET------
T ss_pred CCEEECCEEEEEEEcCCCe-----EEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCC------
Confidence 3455899999988754321 1369999988888888875332 246789999999999997654
Q ss_pred CCCCeeeEEEEEecCCCce---eEeecCCCcceEeeCCe-EEEEEecCCC---------ceEEEEEecCCCcccccCCcc
Q 039497 168 FHELNTDIVVFQESDPNKR---VIVCERGGWPTWSGDST-IYFHRQADDG---------WWSIFRVSFPENLEFLGFPIA 234 (642)
Q Consensus 168 ~~~~~~~l~~~~~~~g~~~---~l~~~~~~~~~wspdg~-~~~~~~~~~g---------~~~l~~~~~~~~~~~~~~~~~ 234 (642)
......|+++++++|+.. .+.......++|+|||+ ++|++.+..+ ..+||++++.++.
T Consensus 143 -G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~-------- 213 (695)
T 2bkl_A 143 -AADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEP-------- 213 (695)
T ss_dssp -TCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCG--------
T ss_pred -CCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCc--------
Confidence 012368999999999865 22211115689999996 4455422111 1123333332220
Q ss_pred ceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccce
Q 039497 235 PTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPH 314 (642)
Q Consensus 235 ~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~ 314 (642)
.+ ..+++......
T Consensus 214 ~~---------------------------------------------------------~~lv~~~~~~~---------- 226 (695)
T 2bkl_A 214 SK---------------------------------------------------------DTVVHERTGDP---------- 226 (695)
T ss_dssp GG---------------------------------------------------------CEEEECCCCCT----------
T ss_pred hh---------------------------------------------------------ceEEEecCCCC----------
Confidence 00 00111000000
Q ss_pred EeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCC-CceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEc
Q 039497 315 LEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFE-LNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTST 392 (642)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~-~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~ 392 (642)
.....+.|||||++|++..... ....||+++..+++.+.+.. ......+.| ++|+ |++.+.
T Consensus 227 ---------------~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~ 289 (695)
T 2bkl_A 227 ---------------TTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTD 289 (695)
T ss_dssp ---------------TCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEEC
T ss_pred ---------------EEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEEC
Confidence 0001347888888888866543 56788988877777777766 334555666 7888 877764
Q ss_pred CCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC-CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCc
Q 039497 393 GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE-TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE 471 (642)
Q Consensus 393 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~ 471 (642)
. +.....|+.++. + ++.. ...+.+..+. ...+..+.|+ +.+|++...+++..+|++++++++.
T Consensus 290 ~-----~~~~~~l~~~d~--~-----~~~~--~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~ 353 (695)
T 2bkl_A 290 E-----GAPRQRVFEVDP--A-----KPAR--ASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKP 353 (695)
T ss_dssp T-----TCTTCEEEEEBT--T-----BCSG--GGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCE
T ss_pred C-----CCCCCEEEEEeC--C-----CCCc--cCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCe
Confidence 2 223455555554 2 1210 0134554432 1345556777 4577777777788899999987443
Q ss_pred cccceeeCCCC-CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497 472 FNGDIRQLTDG-PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530 (642)
Q Consensus 472 ~~~~~~~l~~~-~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 530 (642)
.+.+... ...+..+.++|||+.|+|...... ....||++|+++++.+.+..
T Consensus 354 ----~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~----~P~~v~~~d~~~g~~~~l~~ 405 (695)
T 2bkl_A 354 ----VRTVQLPGVGAASNLMGLEDLDDAYYVFTSFT----TPRQIYKTSVSTGKSELWAK 405 (695)
T ss_dssp ----EEECCCSSSSEECCCBSCTTCSEEEEEEEETT----EEEEEEEEETTTCCEEEEEE
T ss_pred ----eEEecCCCCeEEEEeecCCCCCEEEEEEcCCC----CCCEEEEEECCCCcEEEEec
Confidence 4666543 455667889999999988876543 56789999999988777764
No 64
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.78 E-value=1.3e-16 Score=163.23 Aligned_cols=193 Identities=16% Similarity=0.142 Sum_probs=137.4
Q ss_pred CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEE
Q 039497 374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453 (642)
Q Consensus 374 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~ 453 (642)
.+..++|||||+.|++++. ..+..++||++.. +. ....+ .+. ..+..++|||||++|+..
T Consensus 135 ~~~~v~fSpDg~~la~as~-----~~d~~i~iwd~~~---------~~----~~~~~-~~~-~~V~~v~fspdg~~l~s~ 194 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASS-----KVPAIMRIIDPSD---------LT----EKFEI-ETR-GEVKDLHFSTDGKVVAYI 194 (365)
T ss_dssp CEEEEEECTTSSCEEEEES-----CSSCEEEEEETTT---------TE----EEEEE-ECS-SCCCEEEECTTSSEEEEE
T ss_pred CEEEEEEcCCCCEEEEEEC-----CCCCEEEEeECCC---------Cc----EEEEe-CCC-CceEEEEEccCCceEEec
Confidence 3567899999999988774 2367899999754 21 23333 333 568889999999999887
Q ss_pred eCCCCceeEEEEECCCCccccceeeC--CCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEee--
Q 039497 454 SGRSGHKNLFVLDAVNGEFNGDIRQL--TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH-- 529 (642)
Q Consensus 454 ~~~~g~~~l~~~d~~~g~~~~~~~~l--~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-- 529 (642)
+.. .+.+|+..+++. +... ..+...+..++|+|||++++..+.++. ....++.|++.......+.
T Consensus 195 s~~----~~~~~~~~~~~~---~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~----~~~~i~~~~~~~~~~~~~~~~ 263 (365)
T 4h5i_A 195 TGS----SLEVISTVTGSC---IARKTDFDKNWSLSKINFIADDTVLIAASLKKG----KGIVLTKISIKSGNTSVLRSK 263 (365)
T ss_dssp CSS----CEEEEETTTCCE---EEEECCCCTTEEEEEEEEEETTEEEEEEEESSS----CCEEEEEEEEETTEEEEEEEE
T ss_pred cce----eEEEEEeccCcc---eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCc----ceeEEeecccccceecceeee
Confidence 632 577788877764 2222 234445678899999999988877653 3456788888765543221
Q ss_pred -ecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce-ee-ccCCCCCCCCcE
Q 039497 530 -VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL-RR-LTWNGYENGTPA 606 (642)
Q Consensus 530 -~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~-lt~~~~~~~~~~ 606 (642)
..+... .+..++|||||++|+..+.++ .|.+||+.++++ .. +..+...+.+++
T Consensus 264 ~~~~~~~-------~V~~~~~Spdg~~lasgs~D~-----------------~V~iwd~~~~~~~~~~~~gH~~~V~~v~ 319 (365)
T 4h5i_A 264 QVTNRFK-------GITSMDVDMKGELAVLASNDN-----------------SIALVKLKDLSMSKIFKQAHSFAITEVT 319 (365)
T ss_dssp EEESSCS-------CEEEEEECTTSCEEEEEETTS-----------------CEEEEETTTTEEEEEETTSSSSCEEEEE
T ss_pred eecCCCC-------CeEeEEECCCCCceEEEcCCC-----------------EEEEEECCCCcEEEEecCcccCCEEEEE
Confidence 123333 577899999999998888764 688889988764 33 456777889999
Q ss_pred EecCCceEEeecCCC
Q 039497 607 WHPGNQLDLGKLRLE 621 (642)
Q Consensus 607 ~s~dg~~~~~~~~~~ 621 (642)
|||||++|++....+
T Consensus 320 fSpdg~~laS~S~D~ 334 (365)
T 4h5i_A 320 ISPDSTYVASVSAAN 334 (365)
T ss_dssp ECTTSCEEEEEETTS
T ss_pred ECCCCCEEEEEeCCC
Confidence 999999998865433
No 65
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.78 E-value=1.1e-16 Score=166.83 Aligned_cols=278 Identities=15% Similarity=0.125 Sum_probs=198.6
Q ss_pred eeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceE
Q 039497 236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHL 315 (642)
Q Consensus 236 ~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~ 315 (642)
..+..+...+..++|+|+++.|+....++ .|.+||+..... .
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg-----~i~vwd~~~~~~------------------------------~--- 143 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDA-----TIKVWDYETGDF------------------------------E--- 143 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSS-----CEEEEETTTCCC------------------------------C---
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCcE------------------------------E---
Confidence 34555666788889999999888865544 789998732210 0
Q ss_pred eeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcC
Q 039497 316 EPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTG 393 (642)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~ 393 (642)
..+.+.... .....|+|+|+.|+..+. ...|.++|+.+.+...... ...+..+.|+|+++.|+..+.
T Consensus 144 ~~l~~h~~~-------V~~v~~~~~~~~l~sgs~---D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~- 212 (410)
T 1vyh_C 144 RTLKGHTDS-------VQDISFDHSGKLLASCSA---DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR- 212 (410)
T ss_dssp EEECCCSSC-------EEEEEECTTSSEEEEEET---TSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEET-
T ss_pred EEEeccCCc-------EEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeC-
Confidence 000000011 124589999998877654 3567777888776443332 556889999999999988774
Q ss_pred CCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccc
Q 039497 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473 (642)
Q Consensus 394 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~ 473 (642)
++.+++|++.. +. ....+..+. ..+..+.|+|||+.|+..+.+ ..|.+||+.+++.
T Consensus 213 ------D~~i~~wd~~~--------~~-----~~~~~~~h~-~~v~~~~~~~~g~~l~s~s~D---~~v~vwd~~~~~~- 268 (410)
T 1vyh_C 213 ------DKTIKMWEVQT--------GY-----CVKTFTGHR-EWVRMVRPNQDGTLIASCSND---QTVRVWVVATKEC- 268 (410)
T ss_dssp ------TSEEEEEETTT--------CC-----EEEEEECCS-SCEEEEEECTTSSEEEEEETT---SCEEEEETTTCCE-
T ss_pred ------CCeEEEEECCC--------Cc-----EEEEEeCCC-ccEEEEEECCCCCEEEEEcCC---CeEEEEECCCCce-
Confidence 78999999865 22 455666555 677888999999998877743 4799999998875
Q ss_pred cceeeCCCCCCcccceeEecC--------------------CCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCC
Q 039497 474 GDIRQLTDGPWIDTMPSWSPK--------------------GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP 533 (642)
Q Consensus 474 ~~~~~l~~~~~~~~~~~~spd--------------------G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~ 533 (642)
...+..+...+..+.|+|+ |.+|+..+.++. |.+||+.++....... ++
T Consensus 269 --~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~--------i~iwd~~~~~~~~~~~-~h 337 (410)
T 1vyh_C 269 --KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT--------IKMWDVSTGMCLMTLV-GH 337 (410)
T ss_dssp --EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE--------EEEEETTTTEEEEEEE-CC
T ss_pred --eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe--------EEEEECCCCceEEEEE-CC
Confidence 5666667677788899997 667777776654 9999998876543332 44
Q ss_pred CCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCc
Q 039497 534 EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQ 612 (642)
Q Consensus 534 ~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~ 612 (642)
.. .+..+.|+|+|++|+..+.++ .|.+||+..++ +..+..+...+..++|+|++.
T Consensus 338 ~~-------~v~~v~~~~~g~~l~s~s~D~-----------------~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~ 393 (410)
T 1vyh_C 338 DN-------WVRGVLFHSGGKFILSCADDK-----------------TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 393 (410)
T ss_dssp SS-------CEEEEEECSSSSCEEEEETTT-----------------EEEEECCTTSCCCEEEECCSSCEEEEEECSSSS
T ss_pred CC-------cEEEEEEcCCCCEEEEEeCCC-----------------eEEEEECCCCceEEEEcCCCCcEEEEEEcCCCC
Confidence 44 577899999999998777654 78888887655 566777777788999999999
Q ss_pred eEEeecCCC
Q 039497 613 LDLGKLRLE 621 (642)
Q Consensus 613 ~~~~~~~~~ 621 (642)
++++....+
T Consensus 394 ~l~sgs~D~ 402 (410)
T 1vyh_C 394 YVVTGSVDQ 402 (410)
T ss_dssp CEEEEETTS
T ss_pred EEEEEeCCC
Confidence 998765443
No 66
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.78 E-value=4e-16 Score=159.37 Aligned_cols=304 Identities=11% Similarity=0.006 Sum_probs=200.6
Q ss_pred cceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccc
Q 039497 234 APTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIP 313 (642)
Q Consensus 234 ~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~ 313 (642)
+...+..+...+..++|+|||++|+.....+ .+.+||+.. ++.+...
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~--------------~~~~~~~-------------- 70 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDS-----SASVWYSLN--------------GERLGTL-------------- 70 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSS-----CEEEEETTT--------------CCEEEEE--------------
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCC-----EEEEEeCCC--------------chhhhhh--------------
Confidence 3445666666788899999999888865443 788888622 1111110
Q ss_pred eEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEc
Q 039497 314 HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTST 392 (642)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~ 392 (642)
..... ....+.|+|++++|+.... ...|.++++.+++...... ...+..+.|+|+++.|+....
T Consensus 71 -----~~h~~-------~v~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 135 (369)
T 3zwl_B 71 -----DGHTG-------TIWSIDVDCFTKYCVTGSA---DYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILD 135 (369)
T ss_dssp -----CCCSS-------CEEEEEECTTSSEEEEEET---TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEEC
T ss_pred -----hhcCC-------cEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecC
Confidence 00000 1124589999998888654 3678999998887655544 667889999999999988874
Q ss_pred CCCcccCCCeEEEEEEEeecCCCCCCCCCcc------ccceEEccccC-CCCccCcEECCCCCeEEEEeCCCCceeEEEE
Q 039497 393 GPIFQSERATVQIARVSFQLDPSDDNNREEI------PCDVKILTKEE-TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVL 465 (642)
Q Consensus 393 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~-~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~ 465 (642)
. .....+.+.+|++.. . .... ......+.... ...+..+.|+|||+.|+..+.. ..|++|
T Consensus 136 ~--~~~~~g~i~~~d~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~ 202 (369)
T 3zwl_B 136 N--VMKNPGSINIYEIER--D------SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD---GKISKY 202 (369)
T ss_dssp C--BTTBCCEEEEEEEEE--C------TTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT---SEEEEE
T ss_pred C--ccCCCCEEEEEEecC--C------ccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC---CEEEEE
Confidence 1 001127899999987 2 1000 00112222222 0156778999999999887643 489999
Q ss_pred ECCC-CccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccc
Q 039497 466 DAVN-GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERI 544 (642)
Q Consensus 466 d~~~-g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 544 (642)
|+.+ ++. +..+..+...+..+.|+|+|++|+..+.++. |++||+.+++....... .. .+
T Consensus 203 d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--------i~v~d~~~~~~~~~~~~--~~-------~~ 262 (369)
T 3zwl_B 203 DVSNNYEY---VDSIDLHEKSISDMQFSPDLTYFITSSRDTN--------SFLVDVSTLQVLKKYET--DC-------PL 262 (369)
T ss_dssp ETTTTTEE---EEEEECCSSCEEEEEECTTSSEEEEEETTSE--------EEEEETTTCCEEEEEEC--SS-------CE
T ss_pred ECCCCcEe---EEEEecCCCceeEEEECCCCCEEEEecCCce--------EEEEECCCCceeeeecC--CC-------Cc
Confidence 9987 454 5566666677888999999999988877653 99999988776555442 22 46
Q ss_pred cceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497 545 NHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 545 ~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
..+.|+|+++.|++...++..... ..........|.+|+...++ +..+..+...+..++|+||+++|++....+
T Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 337 (369)
T 3zwl_B 263 NTAVITPLKEFIILGGGQEAKDVT---TTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDG 337 (369)
T ss_dssp EEEEECSSSSEEEEEECCC----------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eeEEecCCCceEEEeecCCCceEE---EEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCC
Confidence 789999999999988866531100 00000011268888887765 445556667778899999999998875544
No 67
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.77 E-value=3e-16 Score=159.55 Aligned_cols=282 Identities=11% Similarity=0.054 Sum_probs=177.6
Q ss_pred cceEeeCCeEEEEEecCC----CceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceee
Q 039497 195 WPTWSGDSTIYFHRQADD----GWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRH 270 (642)
Q Consensus 195 ~~~wspdg~~~~~~~~~~----g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~ 270 (642)
.++|+|||+.+|+..... ....|+.++..++ +.......+.....++++|||++++++....+ .
T Consensus 45 ~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~----~ 112 (353)
T 3vgz_A 45 EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL--------EVTQAIHNDLKPFGATINNTTQTLWFGNTVNS----A 112 (353)
T ss_dssp EEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC--------CEEEEEEESSCCCSEEEETTTTEEEEEETTTT----E
T ss_pred ceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC--------eEEEEEecCCCcceEEECCCCCEEEEEecCCC----E
Confidence 368999997666653221 1348999999887 33333222334667899999998888654332 7
Q ss_pred EEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecC
Q 039497 271 IEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDF 350 (642)
Q Consensus 271 i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 350 (642)
+++||+.. ++.+......... ... .... .....+.|+|||+++++...
T Consensus 113 v~~~d~~~--------------~~~~~~~~~~~~~-----------~~~-~~~~-----~~~~~~~~s~dg~~l~~~~~- 160 (353)
T 3vgz_A 113 VTAIDAKT--------------GEVKGRLVLDDRK-----------RTE-EVRP-----LQPRELVADDATNTVYISGI- 160 (353)
T ss_dssp EEEEETTT--------------CCEEEEEESCCCC-----------CCS-SCCC-----CEEEEEEEETTTTEEEEEEE-
T ss_pred EEEEeCCC--------------CeeEEEEecCCCc-----------ccc-ccCC-----CCCceEEECCCCCEEEEEec-
Confidence 78887622 2221111110000 000 0000 00124589999998877653
Q ss_pred CCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceE
Q 039497 351 ELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVK 428 (642)
Q Consensus 351 ~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 428 (642)
.....|+++|+++++...... ......+.|+|||++|++... ++.+.+|++.. +. ...
T Consensus 161 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-------~~~i~~~d~~~---------~~----~~~ 220 (353)
T 3vgz_A 161 GKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA-------DGELITIDTAD---------NK----ILS 220 (353)
T ss_dssp SSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT-------TSEEEEEETTT---------TE----EEE
T ss_pred CCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC-------CCeEEEEECCC---------Ce----EEE
Confidence 234679999999887665544 344788999999999888753 45666655432 21 222
Q ss_pred Ecccc---CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCC
Q 039497 429 ILTKE---ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH 505 (642)
Q Consensus 429 ~l~~~---~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~ 505 (642)
.+... .......++|+|||++|++.... ...|+++|+.+++. +..+.... ...+.|+|||++|++.....
T Consensus 221 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~v~~~d~~~~~~---~~~~~~~~--~~~~~~s~dg~~l~v~~~~~ 293 (353)
T 3vgz_A 221 RKKLLDDGKEHFFINISLDTARQRAFITDSK--AAEVLVVDTRNGNI---LAKVAAPE--SLAVLFNPARNEAYVTHRQA 293 (353)
T ss_dssp EEECCCSSSCCCEEEEEEETTTTEEEEEESS--SSEEEEEETTTCCE---EEEEECSS--CCCEEEETTTTEEEEEETTT
T ss_pred EEEcCCCCCCcccceEEECCCCCEEEEEeCC--CCEEEEEECCCCcE---EEEEEcCC--CceEEECCCCCEEEEEECCC
Confidence 33221 11234457999999999877643 35899999998885 44444322 25689999999988887543
Q ss_pred CCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 506 NPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 506 ~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
. .|++||+.+++........ . .+..++|+|||++|+++...+
T Consensus 294 ~-------~v~~~d~~~~~~~~~~~~~--~-------~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 294 G-------KVSVIDAKSYKVVKTFDTP--T-------HPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp T-------EEEEEETTTTEEEEEEECC--S-------EEEEEEECTTSCEEEEEEECC
T ss_pred C-------eEEEEECCCCeEEEEEecC--C-------CCCeEEEcCCCCEEEEEEccc
Confidence 2 4999999887765544322 2 457899999999988877653
No 68
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.77 E-value=6.6e-16 Score=155.67 Aligned_cols=291 Identities=11% Similarity=0.094 Sum_probs=175.1
Q ss_pred ceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC--cceEeeCCeEEEEEecCCCceEEEEEec
Q 039497 145 PSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG--WPTWSGDSTIYFHRQADDGWWSIFRVSF 222 (642)
Q Consensus 145 ~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~--~~~wspdg~~~~~~~~~~g~~~l~~~~~ 222 (642)
+.|+++++++...... ...|.+|++++++.......... .++|+|||+.+|+....++ .|+.++.
T Consensus 3 ~~~~~~~~~~~v~~~~-----------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~--~i~~~d~ 69 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQH-----------LRRISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQ--TLVQIET 69 (331)
T ss_dssp ----CCCCEEEEEEGG-----------GTEEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEESTTC--EEEEEEC
T ss_pred eeEcCCCCEEEEEecC-----------CCeEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCCCC--eEEEEEC
Confidence 5678888886655432 33799999999987665553222 5699999986665534344 8899998
Q ss_pred CCCcccccCCcc-ceeeCCCCCcccc-ceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEE
Q 039497 223 PENLEFLGFPIA-PTRVTPPGVHCFT-PAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHR 300 (642)
Q Consensus 223 ~~~~~~~~~~~~-~~~l~~~~~~~~~-~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~ 300 (642)
.++. . ...+.... .... ++|+|||++|+. . ........+++||+... +.+...
T Consensus 70 ~~~~-------~~~~~~~~~~-~~~~~~~~s~dg~~l~~-~-~~~~~~~~i~v~d~~~~--------------~~~~~~- 124 (331)
T 3u4y_A 70 QLEP-------PKVVAIQEGQ-SSMADVDITPDDQFAVT-V-TGLNHPFNMQSYSFLKN--------------KFISTI- 124 (331)
T ss_dssp SSSS-------CEEEEEEECS-SCCCCEEECTTSSEEEE-C-CCSSSSCEEEEEETTTT--------------EEEEEE-
T ss_pred CCCc-------eeEEecccCC-CCccceEECCCCCEEEE-e-cCCCCcccEEEEECCCC--------------CeEEEE-
Confidence 8873 2 33333333 3445 899999998883 2 22112236778876211 111000
Q ss_pred eecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCee-----E-EeecCC
Q 039497 301 FRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW-----T-LIKDRT 374 (642)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~-----~-l~~~~~ 374 (642)
... .....+.|+|||++|++.....+. .|++++++..... . +.....
T Consensus 125 ----------------~~~----------~~~~~~~~spdg~~l~~~~~~~~~-~i~~~~~~~~g~~~~~~~~~~~~~~~ 177 (331)
T 3u4y_A 125 ----------------PIP----------YDAVGIAISPNGNGLILIDRSSAN-TVRRFKIDADGVLFDTGQEFISGGTR 177 (331)
T ss_dssp ----------------ECC----------TTEEEEEECTTSSCEEEEEETTTT-EEEEEEECTTCCEEEEEEEEECSSSS
T ss_pred ----------------ECC----------CCccceEECCCCCEEEEEecCCCc-eEEEEEECCCCcEeecCCccccCCCC
Confidence 000 011256899999987776543232 2555555432211 1 111445
Q ss_pred ceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEe
Q 039497 375 AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRS 454 (642)
Q Consensus 375 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~ 454 (642)
...+.|+|||++|++... ....+.+|++.. +.. ......+... .....++|+|||++|+++.
T Consensus 178 ~~~~~~spdg~~l~v~~~------~~~~v~v~d~~~--------~~~--~~~~~~~~~~--~~~~~~~~spdg~~l~v~~ 239 (331)
T 3u4y_A 178 PFNITFTPDGNFAFVANL------IGNSIGILETQN--------PEN--ITLLNAVGTN--NLPGTIVVSRDGSTVYVLT 239 (331)
T ss_dssp EEEEEECTTSSEEEEEET------TTTEEEEEECSS--------TTS--CEEEEEEECS--SCCCCEEECTTSSEEEEEC
T ss_pred ccceEECCCCCEEEEEeC------CCCeEEEEECCC--------Ccc--cceeeeccCC--CCCceEEECCCCCEEEEEE
Confidence 778999999999988874 367788888754 220 0014444433 4567899999999988776
Q ss_pred CCCCceeEEEEECCCCccccceeeCCC----CCCc---ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEE
Q 039497 455 GRSGHKNLFVLDAVNGEFNGDIRQLTD----GPWI---DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR 527 (642)
Q Consensus 455 ~~~g~~~l~~~d~~~g~~~~~~~~l~~----~~~~---~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 527 (642)
. +...|+++|+.+++. ..+..+.. .... ...++|+|||++|++.+...+ .|.+||+++.....
T Consensus 240 ~--~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~-------~v~v~d~~~~~~~~ 309 (331)
T 3u4y_A 240 E--STVDVFNFNQLSGTL-SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISR-------ELKVFTISGKVVGY 309 (331)
T ss_dssp S--SEEEEEEEETTTTEE-EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTT-------EEEEEETTSCEEEE
T ss_pred c--CCCEEEEEECCCCce-eeecccccccccCCCCcccccceEECCCCCEEEEecCCCC-------cEEEEEecCCcccc
Confidence 4 445799999998873 00111111 1111 133699999999988887543 49999998766554
Q ss_pred e
Q 039497 528 I 528 (642)
Q Consensus 528 l 528 (642)
+
T Consensus 310 ~ 310 (331)
T 3u4y_A 310 V 310 (331)
T ss_dssp C
T ss_pred e
Confidence 4
No 69
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.77 E-value=3.4e-16 Score=160.05 Aligned_cols=292 Identities=14% Similarity=0.138 Sum_probs=161.9
Q ss_pred eeeEEEEEecCCCceeEeecCC---CcceEeeCCeEEEEEec---CCCceEEEEEecCCCcccccCCccceeeCC---CC
Q 039497 172 NTDIVVFQESDPNKRVIVCERG---GWPTWSGDSTIYFHRQA---DDGWWSIFRVSFPENLEFLGFPIAPTRVTP---PG 242 (642)
Q Consensus 172 ~~~l~~~~~~~g~~~~l~~~~~---~~~~wspdg~~~~~~~~---~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~---~~ 242 (642)
+..+|.++.++++.+.+..... ..++|+|||+++|+... ..+...+|.++..++ ..+.+.. .+
T Consensus 28 ~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g--------~~~~~~~~~~~~ 99 (361)
T 3scy_A 28 GIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG--------TLHLLNTQKTMG 99 (361)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT--------EEEEEEEEECSS
T ss_pred CEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC--------cEEEeeEeccCC
Confidence 3344445556777766654322 34599999986666633 346678888887765 3333322 22
Q ss_pred CccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCC
Q 039497 243 VHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPV 322 (642)
Q Consensus 243 ~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (642)
.....+++ ||++|+++.... ..+.+|++.......... ......+. +..
T Consensus 100 ~~p~~~~~--dg~~l~~~~~~~----~~v~~~~~~~~g~~~~~~----------~~~~~~g~---------------~~~ 148 (361)
T 3scy_A 100 ADPCYLTT--NGKNIVTANYSG----GSITVFPIGQDGALLPAS----------DVIEFKGS---------------GPD 148 (361)
T ss_dssp SCEEEEEE--CSSEEEEEETTT----TEEEEEEBCTTSCBCSCS----------EEEECCCC---------------CSC
T ss_pred CCcEEEEE--CCCEEEEEECCC----CEEEEEEeCCCCcCcccc----------eeEEccCC---------------CCC
Confidence 23333444 999888765332 368888873221100000 00000000 000
Q ss_pred ceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECC--CC----C-ee------EEee--cCCceeeeeecCCCEE
Q 039497 323 KELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD--GS----K-RW------TLIK--DRTAFYNSWSPTEKHV 387 (642)
Q Consensus 323 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~--~~----~-~~------~l~~--~~~~~~~~~spdg~~l 387 (642)
.. .........+.|+|||++|++..... ..|++++++ ++ + .. .... ......+.|+|||++|
T Consensus 149 ~~-~~~~~~~~~~~~spdg~~l~~~~~~~--~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l 225 (361)
T 3scy_A 149 KE-RQTMPHLHCVRITPDGKYLLADDLGT--DQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFA 225 (361)
T ss_dssp TT-TCSSCCEEEEEECTTSSEEEEEETTT--TEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred cc-ccCCCcceEEEECCCCCEEEEEeCCC--CEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEE
Confidence 00 00000012368999999888876433 455555544 43 2 21 1111 4456789999999999
Q ss_pred EEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC--CCCccCcEECCCCCeEEEEeCC-CCceeEEE
Q 039497 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE--TGNNAFPSCSPDGKFLVFRSGR-SGHKNLFV 464 (642)
Q Consensus 388 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~SpDg~~l~~~~~~-~g~~~l~~ 464 (642)
++... ....+.+|+++. +..+ ....+.... ......++|||||++|+++... .+...||.
T Consensus 226 ~v~~~------~~~~v~v~~~~~--------g~~~---~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~ 288 (361)
T 3scy_A 226 YLINE------IGGTVIAFRYAD--------GMLD---EIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFK 288 (361)
T ss_dssp EEEET------TTCEEEEEEEET--------TEEE---EEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEE
T ss_pred EEEcC------CCCeEEEEEecC--------CceE---EeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEE
Confidence 88873 367888998864 1100 112222111 0224578999999998877654 34334444
Q ss_pred EECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEee
Q 039497 465 LDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH 529 (642)
Q Consensus 465 ~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 529 (642)
++..+|+. ..+..+.. ......++|+|||++|++..... +...+|.+|.++++.+.+.
T Consensus 289 ~~~~~g~~-~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~-----~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 289 VDETNGTL-TKVGYQLT-GIHPRNFIITPNGKYLLVACRDT-----NVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp ECTTTCCE-EEEEEEEC-SSCCCEEEECTTSCEEEEEETTT-----TEEEEEEECTTTCCEEECS
T ss_pred EcCCCCcE-EEeeEecC-CCCCceEEECCCCCEEEEEECCC-----CCEEEEEEECCCCcEeecc
Confidence 44346663 11222322 23456789999999999887654 4566777888888877654
No 70
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.77 E-value=4.1e-17 Score=165.79 Aligned_cols=230 Identities=13% Similarity=0.128 Sum_probs=151.9
Q ss_pred CCCccEEcCCCCEEEEEecCC--CceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCC------------c
Q 039497 331 NGSFPSFSPDGGLIVFNHDFE--LNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPI------------F 396 (642)
Q Consensus 331 ~~~~~~~spdg~~l~~~~~~~--~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~------------~ 396 (642)
....+.|||||++|+|..... +..+||++++++++.++++....+..+.|||||+.|+|...... +
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~ 139 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPA 139 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESEEEEEEECTTSSEEEEEEECCCC---------CCC
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCCccceeECCCCCEEEEEEccCCCcCCcEEEcccce
Confidence 345689999999999987643 56789999999998888776222889999999999999874210 0
Q ss_pred c-cC-----CCeEEEEEEEeecCCCCCCCCCccccce-EEccccCCCCccCcEECCCCCeEEEEeCCCC-------ceeE
Q 039497 397 Q-SE-----RATVQIARVSFQLDPSDDNNREEIPCDV-KILTKEETGNNAFPSCSPDGKFLVFRSGRSG-------HKNL 462 (642)
Q Consensus 397 ~-~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g-------~~~l 462 (642)
. .+ .....|+.++. . ++ .. +.++. . .+..+.||||| ++|.+.... ..+|
T Consensus 140 ~~~g~~~~~~~~~~l~~~d~--~-----~~-----~~~~~l~~-~--~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l 202 (347)
T 2gop_A 140 WFDDLGFFDGEKTTFWIFDT--E-----SE-----EVIEEFEK-P--RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDI 202 (347)
T ss_dssp C---------CEEEEEEEET--T-----TT-----EEEEEEEE-E--TTCEEEEETTE--EEEEEECCCSSCCSSCCEEE
T ss_pred eecCcccccCccceEEEEEC--C-----CC-----eEEeeecC-C--CcccccCCCCe--EEEEEecccccccccccccE
Confidence 0 00 11456666665 3 33 44 55554 2 56678999999 666654432 4589
Q ss_pred EEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccc
Q 039497 463 FVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRE 542 (642)
Q Consensus 463 ~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 542 (642)
|+++ +|+. +.|+.. .... .+||||++|+|.+...........+||++| +++.+.++. ....
T Consensus 203 ~~~d--~~~~----~~l~~~-~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~-~~~~------- 263 (347)
T 2gop_A 203 YIWE--DGKE----EKMFEK-VSFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD-EVDR------- 263 (347)
T ss_dssp EEEE--TTEE----EEEEEE-ESEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST-TCCS-------
T ss_pred EEeC--CCce----EEeccC-ccee--eECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc-cCCc-------
Confidence 9999 5763 666654 3333 449999999999865421122356799999 666666654 2222
Q ss_pred cccc-eEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeec
Q 039497 543 RINH-VCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKL 618 (642)
Q Consensus 543 ~~~~-~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~ 618 (642)
.+.. +.|+ || +++.+...+.. +|| ++ + ++..+++.....+..++|+| +++++..
T Consensus 264 ~~~~~~~~s-dg--~~~~~~~~~~~--------------~l~-~~-~-g~~~~~~~~~~~v~~~~~s~--~~~~~~~ 318 (347)
T 2gop_A 264 GVGQAKIKD-GK--VYFTLFEEGSV--------------NLY-IW-D-GEIKPIAKGRHWIMGFDVDE--IVVYLKE 318 (347)
T ss_dssp EEEEEEEET-TE--EEEEEEETTEE--------------EEE-EE-S-SSEEEEECSSSEEEEEEESS--SEEEEEE
T ss_pred ccCCccEEc-Cc--EEEEEecCCcE--------------EEE-Ec-C-CceEEEecCCCeEEeeeeeC--cEEEEEc
Confidence 3454 8899 88 66665554432 788 88 4 45666666555567789999 4444433
No 71
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.77 E-value=4.1e-16 Score=167.69 Aligned_cols=364 Identities=10% Similarity=0.055 Sum_probs=216.4
Q ss_pred ceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee-cCC-CcceEeeCCeEEEEEecCCCceEEEEEec
Q 039497 145 PSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC-ERG-GWPTWSGDSTIYFHRQADDGWWSIFRVSF 222 (642)
Q Consensus 145 ~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~-~~~~wspdg~~~~~~~~~~g~~~l~~~~~ 222 (642)
..++|+|+.++....+. .|.+|+..+++...... ... ..++++|||+.+|+.+ .++ .|..+++
T Consensus 143 ~~~~p~~~~~vs~~~d~------------~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~-~d~--~V~v~D~ 207 (543)
T 1nir_A 143 NDLDLPNLFSVTLRDAG------------QIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIG-RDA--RIDMIDL 207 (543)
T ss_dssp SCCCGGGEEEEEEGGGT------------EEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEE-TTS--EEEEEET
T ss_pred cccCCCCEEEEEEcCCC------------eEEEEECCCceEEEEEecCcccceEEECCCCCEEEEEC-CCC--eEEEEEC
Confidence 35899997766655444 78999999988655544 222 2457999998888874 345 5666676
Q ss_pred --CCCcccccCCccceeeCCCCCccccceeec----CCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEE
Q 039497 223 --PENLEFLGFPIAPTRVTPPGVHCFTPAAFH----DGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFI 296 (642)
Q Consensus 223 --~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp----dG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l 296 (642)
.++. ....+. .+.....++||| ||++|++..... ..+.+||..+ ++.+
T Consensus 208 ~~~t~~-------~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~----~~v~v~D~~t--------------~~~~ 261 (543)
T 1nir_A 208 WAKEPT-------KVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWP----PQFAIMDGET--------------LEPK 261 (543)
T ss_dssp TSSSCE-------EEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEES----SEEEEEETTT--------------CCEE
T ss_pred cCCCCc-------EEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccC----CeEEEEeccc--------------cccc
Confidence 5552 233343 344567889999 999988865432 2678887622 1112
Q ss_pred EEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEE---eecC
Q 039497 297 GYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTL---IKDR 373 (642)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l---~~~~ 373 (642)
......+.. .+.. .. ........+.+||+++.+++... ....|+++|....+...+ ....
T Consensus 262 ~~i~~~g~~------------~~~~--~~-~~~~~v~~i~~s~~~~~~~vs~~--~~g~i~vvd~~~~~~l~~~~i~~~~ 324 (543)
T 1nir_A 262 QIVSTRGMT------------VDTQ--TY-HPEPRVAAIIASHEHPEFIVNVK--ETGKVLLVNYKDIDNLTVTSIGAAP 324 (543)
T ss_dssp EEEECCEEC------------SSSC--CE-ESCCCEEEEEECSSSSEEEEEET--TTTEEEEEECTTSSSCEEEEEECCS
T ss_pred eeecccCcc------------cCcc--cc-ccCCceEEEEECCCCCEEEEEEC--CCCeEEEEEecCCCcceeEEeccCc
Confidence 211110000 0000 00 00001124578999988777653 356899999877553332 2245
Q ss_pred CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCC-CCccCcE-ECCCCCeEE
Q 039497 374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEET-GNNAFPS-CSPDGKFLV 451 (642)
Q Consensus 374 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~-~SpDg~~l~ 451 (642)
....+.|+|||++|+.+.. .++.+.+|++.. ++ ....+..... ....... ++|++..++
T Consensus 325 ~~~~~~~spdg~~l~va~~------~~~~v~v~D~~t---------g~----l~~~i~~g~~ph~g~g~~~~~p~~g~~~ 385 (543)
T 1nir_A 325 FLHDGGWDSSHRYFMTAAN------NSNKVAVIDSKD---------RR----LSALVDVGKTPHPGRGANFVHPKYGPVW 385 (543)
T ss_dssp SCCCEEECTTSCEEEEEEG------GGTEEEEEETTT---------TE----EEEEEECSSSBCCTTCEEEEETTTEEEE
T ss_pred CccCceECCCCCEEEEEec------CCCeEEEEECCC---------Ce----EEEeeccCCCCCCCCCcccCCCCCccEE
Confidence 6778999999999987774 366788877643 21 2233332110 0001223 478876766
Q ss_pred EEeCCCCceeEEEEECCC-------CccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc
Q 039497 452 FRSGRSGHKNLFVLDAVN-------GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG 524 (642)
Q Consensus 452 ~~~~~~g~~~l~~~d~~~-------g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~ 524 (642)
.+... +...|.+|++++ ++. ++.|..+......+.++|||++|+....-+. .......|.+||+++.+
T Consensus 386 ~s~~~-~d~~V~v~d~~~~~~~~~~~~~---v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~-~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 386 STSHL-GDGSISLIGTDPKNHPQYAWKK---VAELQGQGGGSLFIKTHPKSSHLYVDTTFNP-DARISQSVAVFDLKNLD 460 (543)
T ss_dssp EEEBS-SSSEEEEEECCTTTCTTTBTSE---EEEEECSCSCCCCEECCTTCCEEEECCTTCS-SHHHHTCEEEEETTCTT
T ss_pred EeccC-CCceEEEEEeCCCCCchhcCeE---EEEEEcCCCCceEEEcCCCCCcEEEecCCCC-CcccCceEEEEECCCCC
Confidence 55432 334788999887 554 5666655445567899999999888763110 00013359999998876
Q ss_pred eE-Eee-e------cCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc
Q 039497 525 LR-RIH-V------AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596 (642)
Q Consensus 525 ~~-~l~-~------~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt 596 (642)
.. .+. . ..... .+.++.|+|||+.|+++...+.. ....|.+||..++++....
T Consensus 461 ~~~~~~~v~~~~~~~~~~~-------~~~~~~~~~~g~~~~~s~~~~~~------------~~~~i~v~D~~t~~~~~~i 521 (543)
T 1nir_A 461 AKYQVLPIAEWADLGEGAK-------RVVQPEYNKRGDEVWFSVWNGKN------------DSSALVVVDDKTLKLKAVV 521 (543)
T ss_dssp SCCEEECHHHHHCCCSSCC-------EEEEEEECSSSSEEEEEEECCTT------------SCCEEEEEETTTTEEEEEE
T ss_pred CCeEEeechhhcccCCCCC-------ceEeccCCCCCCEEEEEeecCCC------------CCCeEEEEECCCceEEEee
Confidence 53 221 1 01122 67889999999999987532100 0238999999988755433
Q ss_pred CCCCCCCCcEEecCCceE
Q 039497 597 WNGYENGTPAWHPGNQLD 614 (642)
Q Consensus 597 ~~~~~~~~~~~s~dg~~~ 614 (642)
.... ..+|+|++-
T Consensus 522 ~~~~-----~~~p~g~~~ 534 (543)
T 1nir_A 522 KDPR-----LITPTGKFN 534 (543)
T ss_dssp CCTT-----CCSEEEEEE
T ss_pred cCCC-----ccCCCeeee
Confidence 3211 345777664
No 72
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.77 E-value=6.4e-17 Score=163.94 Aligned_cols=223 Identities=13% Similarity=0.129 Sum_probs=155.8
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEE
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIA 406 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~ 406 (642)
...+|+||++ |+..+. ...|.++|+++++...... ...+..+.|+|||++|+..+. ++.+++|
T Consensus 86 ~~~~~s~d~~-l~~~s~---dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~-------d~~i~iw 154 (344)
T 4gqb_B 86 ADLTWVGERG-ILVASD---SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK-------DICIKVW 154 (344)
T ss_dssp EEEEEETTTE-EEEEET---TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEET-------TSCEEEE
T ss_pred EEEEEeCCCe-EEEEEC---CCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeC-------CCeEEEE
Confidence 4568999964 555443 3568888887776433221 456889999999999988874 7889999
Q ss_pred EEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC--CCC
Q 039497 407 RVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD--GPW 484 (642)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~--~~~ 484 (642)
++.. +. ....+..+. ..+..+.|+|+++.++.+...+ ..|.+||+.+++. ...+.. ...
T Consensus 155 d~~~--------~~-----~~~~~~~h~-~~V~~~~~~~~~~~~l~s~s~D--~~v~iwd~~~~~~---~~~~~~~~~~~ 215 (344)
T 4gqb_B 155 DLAQ--------QV-----VLSSYRAHA-AQVTCVAASPHKDSVFLSCSED--NRILLWDTRCPKP---ASQIGCSAPGY 215 (344)
T ss_dssp ETTT--------TE-----EEEEECCCS-SCEEEEEECSSCTTEEEEEETT--SCEEEEETTSSSC---EEECC----CC
T ss_pred ECCC--------Cc-----EEEEEcCcC-CceEEEEecCCCCCceeeeccc--cccccccccccce---eeeeecceeec
Confidence 9855 22 455566555 7788899999998765554433 3789999998886 555543 223
Q ss_pred cccceeEecCC-CEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEE-EEec
Q 039497 485 IDTMPSWSPKG-DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLF-TANL 562 (642)
Q Consensus 485 ~~~~~~~spdG-~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~-~~~~ 562 (642)
.+..+.|+|++ ++|+..+.++. |.+||+.+++...... ++.. .+..++|||||..+++ .+.+
T Consensus 216 ~~~~~~~~p~~~~~l~sg~~dg~--------v~~wd~~~~~~~~~~~-~h~~-------~v~~v~fsp~g~~~lasgs~D 279 (344)
T 4gqb_B 216 LPTSLAWHPQQSEVFVFGDENGT--------VSLVDTKSTSCVLSSA-VHSQ-------CVTGLVFSPHSVPFLASLSED 279 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSE--------EEEEESCC--CCEEEE-CCSS-------CEEEEEECSSSSCCEEEEETT
T ss_pred cceeeeecCCCCcceEEeccCCc--------EEEEECCCCcEEEEEc-CCCC-------CEEEEEEccCCCeEEEEEeCC
Confidence 45678999965 55555555543 9999998776543332 4444 5788999999965444 4444
Q ss_pred CCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEE-eec
Q 039497 563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDL-GKL 618 (642)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~-~~~ 618 (642)
+ .|.+||+..+++.++..+...+.+++|||+++.++ +..
T Consensus 280 ~-----------------~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s 319 (344)
T 4gqb_B 280 C-----------------SLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVG 319 (344)
T ss_dssp S-----------------CEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEE
T ss_pred C-----------------eEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEc
Confidence 3 78889999998888888888889999999997654 443
No 73
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.77 E-value=1.5e-17 Score=169.75 Aligned_cols=278 Identities=11% Similarity=0.059 Sum_probs=173.0
Q ss_pred CCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCC--Ccee--EEeee--CCCccEEcCCCCEEEEEecCCCc
Q 039497 280 PNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASP--VKEL--RMLRL--NGSFPSFSPDGGLIVFNHDFELN 353 (642)
Q Consensus 280 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~--~~~~~~~spdg~~l~~~~~~~~~ 353 (642)
+...+...+|||||+.|+....+....-+ ..+++...... ...+ ..... ....++|+||++.++ .+. .
T Consensus 41 H~~~V~~v~fSpDG~~las~s~d~~~~wd--~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~-~s~---d 114 (357)
T 4g56_B 41 MEVQIGAVRYRRDGALLLAASSLSSRTWG--GSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILV-ASD---S 114 (357)
T ss_dssp CCSEEEEEEECSSSCEEEEEECSSSSSCC--EEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEE-EET---T
T ss_pred ccCCEEEEEECCCCCEEEEEcCCCCcccc--CeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEE-EEC---C
Confidence 44456677999999999887543221000 01122221111 1111 11111 124578999987554 332 3
Q ss_pred eeEEEEECCCCCeeEE---e---ecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccce
Q 039497 354 AGIKIAKSDGSKRWTL---I---KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDV 427 (642)
Q Consensus 354 ~~l~~~d~~~~~~~~l---~---~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 427 (642)
..|.++|+.+++.... . ....+..+.|+|||+.|+..+. ++.+++|++.. +. ..
T Consensus 115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~-------dg~v~iwd~~~--------~~-----~~ 174 (357)
T 4g56_B 115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK-------DFSVKVWDLSQ--------KA-----VL 174 (357)
T ss_dssp SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEET-------TSCEEEEETTT--------TE-----EE
T ss_pred CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC-------CCeEEEEECCC--------Cc-----EE
Confidence 4677788776653221 1 1456889999999999988774 68899998754 12 44
Q ss_pred EEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC--CCCCcccceeEecCCC-EEEEEecC
Q 039497 428 KILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT--DGPWIDTMPSWSPKGD-LIAFSSNR 504 (642)
Q Consensus 428 ~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~--~~~~~~~~~~~spdG~-~l~~~~~~ 504 (642)
..+..+. ..+..++|+|+++.++.+...+ ..|.+||+.+++. ...+. .....+..++|+|++. +|+..+.+
T Consensus 175 ~~~~~h~-~~v~~v~~s~~~~~~~~s~~~d--g~v~~wd~~~~~~---~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d 248 (357)
T 4g56_B 175 KSYNAHS-SEVNCVAACPGKDTIFLSCGED--GRILLWDTRKPKP---ATRIDFCASDTIPTSVTWHPEKDDTFACGDET 248 (357)
T ss_dssp EEECCCS-SCEEEEEECTTCSSCEEEEETT--SCEEECCTTSSSC---BCBCCCTTCCSCEEEEEECTTSTTEEEEEESS
T ss_pred EEEcCCC-CCEEEEEEccCCCceeeeeccC--CceEEEECCCCce---eeeeeeccccccccchhhhhcccceEEEeecc
Confidence 5555555 6778899999997655444433 3789999988875 33333 2334567789999864 55555555
Q ss_pred CCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEE
Q 039497 505 HNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYV 584 (642)
Q Consensus 505 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 584 (642)
+. |++||+.+++...... .... .+..++||||++.++++....+ .|.+
T Consensus 249 ~~--------i~~wd~~~~~~~~~~~-~~~~-------~v~~l~~sp~~~~~lasgs~D~----------------~i~i 296 (357)
T 4g56_B 249 GN--------VSLVNIKNPDSAQTSA-VHSQ-------NITGLAYSYHSSPFLASISEDC----------------TVAV 296 (357)
T ss_dssp SC--------EEEEESSCGGGCEEEC-CCSS-------CEEEEEECSSSSCCEEEEETTS----------------CEEE
T ss_pred cc--------eeEEECCCCcEeEEEe-ccce-------eEEEEEEcCCCCCEEEEEeCCC----------------EEEE
Confidence 43 9999998876544332 3333 5788999999965544443322 7888
Q ss_pred EEcCCCceeeccCCCCCCCCcEEec-CCceEEeecCCC
Q 039497 585 VKLDGSGLRRLTWNGYENGTPAWHP-GNQLDLGKLRLE 621 (642)
Q Consensus 585 ~~~~~~~~~~lt~~~~~~~~~~~s~-dg~~~~~~~~~~ 621 (642)
||+.++++.+...+...+..++||| |+++|++....+
T Consensus 297 wd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg 334 (357)
T 4g56_B 297 LDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDH 334 (357)
T ss_dssp ECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred EECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCC
Confidence 9999888777777777788999998 789888765433
No 74
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.77 E-value=2.8e-16 Score=159.86 Aligned_cols=227 Identities=7% Similarity=0.003 Sum_probs=155.4
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeec-C----------CceeeeeecCCCEEEEEEcCCCcccCCC
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD-R----------TAFYNSWSPTEKHVIYTSTGPIFQSERA 401 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~----------~~~~~~~spdg~~l~~~~~~~~~~~~~~ 401 (642)
..+.|+|||+++++... ....|+++|+++++....... . ....+.|+|||+++++.... .+.
T Consensus 92 ~~~~~s~dg~~l~v~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~~ 164 (353)
T 3vgz_A 92 FGATINNTTQTLWFGNT--VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG-----KES 164 (353)
T ss_dssp CSEEEETTTTEEEEEET--TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES-----SSC
T ss_pred ceEEECCCCCEEEEEec--CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC-----CCc
Confidence 46789999998877664 245899999998876554431 1 15678999999998887732 244
Q ss_pred eEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC
Q 039497 402 TVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD 481 (642)
Q Consensus 402 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~ 481 (642)
.+.+|++.. +. ....+.... .....+.|+|||++|++... ...|+++|+.+++. ...+..
T Consensus 165 ~i~~~d~~~---------~~----~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~---~~~i~~~d~~~~~~---~~~~~~ 224 (353)
T 3vgz_A 165 VIWVVDGGN---------IK----LKTAIQNTG-KMSTGLALDSEGKRLYTTNA---DGELITIDTADNKI---LSRKKL 224 (353)
T ss_dssp EEEEEETTT---------TE----EEEEECCCC-TTCCCCEEETTTTEEEEECT---TSEEEEEETTTTEE---EEEEEC
T ss_pred eEEEEcCCC---------Cc----eEEEecCCC-CccceEEECCCCCEEEEEcC---CCeEEEEECCCCeE---EEEEEc
Confidence 555655432 21 333333222 34677899999999887764 34899999998885 344432
Q ss_pred ----CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEE
Q 039497 482 ----GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL 557 (642)
Q Consensus 482 ----~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~ 557 (642)
.......++|+|||++|++..... ..|+++|+.+++........ ....+.|+|||++|+
T Consensus 225 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~-------~~v~~~d~~~~~~~~~~~~~----------~~~~~~~s~dg~~l~ 287 (353)
T 3vgz_A 225 LDDGKEHFFINISLDTARQRAFITDSKA-------AEVLVVDTRNGNILAKVAAP----------ESLAVLFNPARNEAY 287 (353)
T ss_dssp CCSSSCCCEEEEEEETTTTEEEEEESSS-------SEEEEEETTTCCEEEEEECS----------SCCCEEEETTTTEEE
T ss_pred CCCCCCcccceEEECCCCCEEEEEeCCC-------CEEEEEECCCCcEEEEEEcC----------CCceEEECCCCCEEE
Confidence 122344579999999998877543 35999999888765544322 124689999999988
Q ss_pred EEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCce-EEeecC
Q 039497 558 FTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL-DLGKLR 619 (642)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~-~~~~~~ 619 (642)
++....+ .|++||..+++.......+.....++|+|||++ +++..+
T Consensus 288 v~~~~~~----------------~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 288 VTHRQAG----------------KVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEETTTT----------------EEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred EEECCCC----------------eEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 7764432 899999988775544444445578899999985 466544
No 75
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.77 E-value=8.3e-16 Score=153.12 Aligned_cols=284 Identities=11% Similarity=0.043 Sum_probs=190.9
Q ss_pred ecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC---CcceEeeCCeEEEEEec
Q 039497 134 RLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG---GWPTWSGDSTIYFHRQA 210 (642)
Q Consensus 134 ~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~wspdg~~~~~~~~ 210 (642)
.+..+.......+|||||++||....++ .|.+|++.++...+...... ....|+|++.++++. .
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg------------~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-s 74 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSG------------RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVG-S 74 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTS------------EEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEE-E
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCC------------cEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEE-C
Confidence 3444555566789999999999988666 78999999887554444332 245899999888887 4
Q ss_pred CCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeec
Q 039497 211 DDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVS 290 (642)
Q Consensus 211 ~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~s 290 (642)
.++ .|..++..++. ....+..+...+..++|+|++++|+....++ .+.+||+....
T Consensus 75 ~d~--~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~-----~v~lWd~~~~~---------- 130 (304)
T 2ynn_A 75 DDF--RIRVFNYNTGE-------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL-----TVKLWNWENNW---------- 130 (304)
T ss_dssp TTS--EEEEEETTTCC-------EEEEEECCSSCEEEEEECSSSSEEEEEETTS-----CEEEEEGGGTT----------
T ss_pred CCC--EEEEEECCCCc-------EEEEEeCCCCcEEEEEEcCCCCEEEEECCCC-----eEEEEECCCCc----------
Confidence 577 45555666663 4556666766788899999999988865544 89999973211
Q ss_pred CCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcC-CCCEEEEEecCCCceeEEEEECCCCCeeEE
Q 039497 291 ANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSP-DGGLIVFNHDFELNAGIKIAKSDGSKRWTL 369 (642)
Q Consensus 291 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~d~~~~~~~~l 369 (642)
.+.. .+.+.... .....|+| +++.|+..+. ...|.++|+........
T Consensus 131 ----~~~~------------------~~~~h~~~-------v~~v~~~p~~~~~l~sgs~---D~~v~iwd~~~~~~~~~ 178 (304)
T 2ynn_A 131 ----ALEQ------------------TFEGHEHF-------VMCVAFNPKDPSTFASGCL---DRTVKVWSLGQSTPNFT 178 (304)
T ss_dssp ----EEEE------------------EECCCCSC-------EEEEEECTTCTTEEEEEET---TSEEEEEETTCSSCSEE
T ss_pred ----chhh------------------hhcccCCc-------EEEEEECCCCCCEEEEEeC---CCeEEEEECCCCCccce
Confidence 0000 00000001 12458898 5777776554 35788888876654333
Q ss_pred ee---cCCceeeeeec--CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEEC
Q 039497 370 IK---DRTAFYNSWSP--TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCS 444 (642)
Q Consensus 370 ~~---~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~S 444 (642)
.. ...+..+.|+| +++.|+..+. ++.+++|++.. +. ....+..+. ..+..+.|+
T Consensus 179 ~~~~~~~~v~~~~~~~~~~~~~l~s~s~-------D~~i~iWd~~~--------~~-----~~~~~~~h~-~~v~~~~~~ 237 (304)
T 2ynn_A 179 LTTGQERGVNYVDYYPLPDKPYMITASD-------DLTIKIWDYQT--------KS-----CVATLEGHM-SNVSFAVFH 237 (304)
T ss_dssp EECCCTTCEEEEEECCSTTCCEEEEEET-------TSEEEEEETTT--------TE-----EEEEEECCS-SCEEEEEEC
T ss_pred eccCCcCcEEEEEEEEcCCCCEEEEEcC-------CCeEEEEeCCC--------Cc-----cceeeCCCC-CCEEEEEEC
Confidence 22 34566677776 6777877763 78999999854 22 455566555 677889999
Q ss_pred CCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCE--EEEEecCCCCCCCCceeEEEEeCCC
Q 039497 445 PDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL--IAFSSNRHNPDNVEAFSLYVIKPDG 522 (642)
Q Consensus 445 pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~--l~~~~~~~~~~~~~~~~l~~~d~~~ 522 (642)
|+++.|+..+. +..|.+||+.+++. ...+..+...+..++|+|+|+. |+....++ +.++++..
T Consensus 238 p~~~~l~s~s~---Dg~i~iWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g---------~~~~~~~~ 302 (304)
T 2ynn_A 238 PTLPIIISGSE---DGTLKIWNSSTYKV---EKTLNVGLERSWCIATHPTGRKNYIASGFDNG---------FTVLSLGN 302 (304)
T ss_dssp SSSSEEEEEET---TSCEEEEETTTCCE---EEEECCSSSSEEEEEECTTCGGGCEEEEETTE---------EEEEECC-
T ss_pred CCCCEEEEEcC---CCeEEEEECCCCce---eeeccCCCccEEEEEECCCCCceEEEEecCCc---------eEEEEecc
Confidence 99998887764 34799999999886 6677766666778899998864 44444332 67777643
No 76
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.77 E-value=1.5e-15 Score=154.18 Aligned_cols=278 Identities=13% Similarity=0.102 Sum_probs=167.3
Q ss_pred ceEEEEccCCceEeccc--CCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee---cCC--
Q 039497 121 ALYSTDLKASKFTRLTP--YGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC---ERG-- 193 (642)
Q Consensus 121 ~l~~~~~~~~~~~~lt~--~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~---~~~-- 193 (642)
.+|.++..+++.+.+.. .......++|||||+ |+++.... ....|++|++.+++.+.+.. ...
T Consensus 19 ~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~---------~~~~v~~~~~~~g~~~~~~~~~~~~~~p 88 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKED---------DEGGIAAWQIDGQTAHKLNTVVAPGTPP 88 (347)
T ss_dssp EEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEET---------TEEEEEEEEEETTEEEEEEEEEEESCCC
T ss_pred EEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecC---------CCceEEEEEecCCcEEEeeeeecCCCCC
Confidence 58888888888766542 334456789999999 66665422 25689999998887666554 111
Q ss_pred CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCC---------CccccceeecCCcEEEEEEecc
Q 039497 194 GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPG---------VHCFTPAAFHDGKRLAVATRRK 264 (642)
Q Consensus 194 ~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~SpdG~~l~~~~~~~ 264 (642)
..++|+|||+.+|+....++...+|.++..+... ....+...+ ..+..++|+|||+ ++++....
T Consensus 89 ~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~------~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~ 161 (347)
T 3hfq_A 89 AYVAVDEARQLVYSANYHKGTAEVMKIAADGALT------LTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGS 161 (347)
T ss_dssp SEEEEETTTTEEEEEETTTTEEEEEEECTTSCEE------EEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTT
T ss_pred EEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCee------ecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCC
Confidence 3569999998777764566766777765433210 112221111 1234578899999 65543322
Q ss_pred CCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEE
Q 039497 265 NRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLI 344 (642)
Q Consensus 265 ~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 344 (642)
..+++|++. ++|+....... ..... .....+.|+|||++|
T Consensus 162 ----~~v~~~~~~-------------~~g~~~~~~~~---------------~~~~g--------~~p~~~~~spdg~~l 201 (347)
T 3hfq_A 162 ----DKVYVYNVS-------------DAGQLSEQSVL---------------TMEAG--------FGPRHLVFSPDGQYA 201 (347)
T ss_dssp ----TEEEEEEEC-------------TTSCEEEEEEE---------------ECCTT--------CCEEEEEECTTSSEE
T ss_pred ----CEEEEEEEC-------------CCCcEEEeeeE---------------EcCCC--------CCCceEEECCCCCEE
Confidence 267788773 12221111100 00000 001245899999988
Q ss_pred EEEecCCCceeEEEEECCCCCeeEEee----c------CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCC
Q 039497 345 VFNHDFELNAGIKIAKSDGSKRWTLIK----D------RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414 (642)
Q Consensus 345 ~~~~~~~~~~~l~~~d~~~~~~~~l~~----~------~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 414 (642)
++.....+...+|.++..+++...+.. . .....++|+|||++|+++.. ....+.+|+++. +
T Consensus 202 ~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~------~~~~v~v~~~~~--~- 272 (347)
T 3hfq_A 202 FLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR------GYNTLAVFAVTA--D- 272 (347)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE------TTTEEEEEEECG--G-
T ss_pred EEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeC------CCCEEEEEEECC--C-
Confidence 887654444455555544555433322 1 23567899999999988764 367899999864 1
Q ss_pred CCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcc
Q 039497 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472 (642)
Q Consensus 415 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~ 472 (642)
+.. .....+.... .....++|||||++|+++...++...||.+|..+|+.
T Consensus 273 -----g~~--~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 273 -----GHL--TLIQQISTEG-DFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp -----GCE--EEEEEEECSS-SCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred -----CcE--EEeEEEecCC-CCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 200 0222333322 3466789999999999888766666677778888874
No 77
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.76 E-value=3.8e-16 Score=158.65 Aligned_cols=287 Identities=15% Similarity=0.116 Sum_probs=180.9
Q ss_pred eeeCCCCC-ccccceeecCCcEEEEEEeccCCceeeEEEEEeec-----------CCCCcccCCeecCCCCEEEEEEeec
Q 039497 236 TRVTPPGV-HCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL-----------NPNFHHYNPFVSANSEFIGYHRFRG 303 (642)
Q Consensus 236 ~~l~~~~~-~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~-----------~~~~~~~~~~~spDg~~l~~~~~~~ 303 (642)
..+..+.. .+..++|||||++|+....++ .|++||+.. ++...+...+|+|||+.|+....++
T Consensus 9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~-----~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDR-----RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp EEECCSTTSCEEEEEECTTSSCEEEEETTS-----CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eeecCCCCCcEEEEEECCCCCEEEEEcCCC-----eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 44555543 677889999999999866554 799998832 3455567789999999999876655
Q ss_pred CCCCCCcccceEeeccCCCceeEEeee---CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeE-Ee--e--cCCc
Q 039497 304 ESTEGQSTIPHLEPVASPVKELRMLRL---NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWT-LI--K--DRTA 375 (642)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~-l~--~--~~~~ 375 (642)
. ..+|..... ....+..... ....+.|+|+|++|+..+. ...|.++++..+.... +. . ...+
T Consensus 84 ~------v~iw~~~~~-~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~h~~~v 153 (345)
T 3fm0_A 84 T------TCIWKKNQD-DFECVTTLEGHENEVKSVAWAPSGNLLATCSR---DKSVWVWEVDEEDEYECVSVLNSHTQDV 153 (345)
T ss_dssp C------EEEEEECCC--EEEEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEEECTTSCEEEEEEECCCCSCE
T ss_pred c------EEEEEccCC-CeEEEEEccCCCCCceEEEEeCCCCEEEEEEC---CCeEEEEECCCCCCeEEEEEecCcCCCe
Confidence 4 334432211 1111111111 1245789999998888764 2567777876654322 21 1 4567
Q ss_pred eeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeC
Q 039497 376 FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSG 455 (642)
Q Consensus 376 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~ 455 (642)
..+.|+|+++.|+..+. ++.+++|++.. . ... ....+..+. ..+..++|+|||++|+..+.
T Consensus 154 ~~~~~~p~~~~l~s~s~-------d~~i~~w~~~~--~------~~~---~~~~~~~h~-~~v~~l~~sp~g~~l~s~s~ 214 (345)
T 3fm0_A 154 KHVVWHPSQELLASASY-------DDTVKLYREEE--D------DWV---CCATLEGHE-STVWSLAFDPSGQRLASCSD 214 (345)
T ss_dssp EEEEECSSSSCEEEEET-------TSCEEEEEEET--T------EEE---EEEEECCCS-SCEEEEEECTTSSEEEEEET
T ss_pred EEEEECCCCCEEEEEeC-------CCcEEEEEecC--C------CEE---EEEEecCCC-CceEEEEECCCCCEEEEEeC
Confidence 88999999999988874 68899999865 1 100 123445554 67888999999999987774
Q ss_pred CCCceeEEEEECCCCcccc------------ceeeCCC-CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497 456 RSGHKNLFVLDAVNGEFNG------------DIRQLTD-GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG 522 (642)
Q Consensus 456 ~~g~~~l~~~d~~~g~~~~------------~~~~l~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~ 522 (642)
+ + .|.+|+...+.... .+..+.. +...+..++|+|++..|+..+.++. |.+|+.+.
T Consensus 215 D-~--~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~--------i~vw~~~~ 283 (345)
T 3fm0_A 215 D-R--TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDA--------IRVFQEDP 283 (345)
T ss_dssp T-S--CEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSC--------EEEEEECT
T ss_pred C-C--eEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCe--------EEEEEeCC
Confidence 3 3 56666643221100 0111221 3345677899999999998887764 77777765
Q ss_pred Cce------EE-ee-ecCCCCCCCcccccccceEEcCCCC-EEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc
Q 039497 523 SGL------RR-IH-VAGPEGSGDVDRERINHVCFSADGE-WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG 591 (642)
Q Consensus 523 ~~~------~~-l~-~~~~~~~~~~~~~~~~~~~~S~Dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 591 (642)
+.. .. .. ..++.. .+..++|+|++. .|+..+.++ .|.+|++..++
T Consensus 284 ~~~~~~~~~~~~~~~~~~h~~-------~V~~v~~~p~~~~~laS~s~Dg-----------------~v~~W~~~~~~ 337 (345)
T 3fm0_A 284 NSDPQQPTFSLTAHLHQAHSQ-------DVNCVAWNPKEPGLLASCSDDG-----------------EVAFWKYQRPE 337 (345)
T ss_dssp TSCTTSCCEEEEEEETTSSSS-------CEEEEEECSSSTTEEEEEETTS-----------------CEEEEEECC--
T ss_pred CCCcceeeEEEEeeecccccC-------cEeEeEEeCCCceEEEEcCCCC-----------------cEEEEEecCCC
Confidence 421 11 11 123333 678899999985 566555554 67777776644
No 78
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.76 E-value=2.7e-16 Score=159.25 Aligned_cols=280 Identities=12% Similarity=-0.005 Sum_probs=175.5
Q ss_pred ccccceeecCCcEEEEEEeccCCc-eeeEEEEEeec------------CCCCcccCCeecCCCCEEEEEEeecCCCCCCc
Q 039497 244 HCFTPAAFHDGKRLAVATRRKNRN-FRHIEIYDLTL------------NPNFHHYNPFVSANSEFIGYHRFRGESTEGQS 310 (642)
Q Consensus 244 ~~~~~~~SpdG~~l~~~~~~~~~~-~~~i~~~d~~~------------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~ 310 (642)
.+..++|||||+.|+........- ...+++|+... .....+...+|+||++ |+....++.
T Consensus 32 ~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-l~~~s~dg~------ 104 (344)
T 4gqb_B 32 QLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERG-ILVASDSGA------ 104 (344)
T ss_dssp EEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTE-EEEEETTSE------
T ss_pred CEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCe-EEEEECCCE------
Confidence 466788999999888755322111 11333333211 1123456678999964 555433332
Q ss_pred ccceEeeccCCCceeEEee--e--CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCC
Q 039497 311 TIPHLEPVASPVKELRMLR--L--NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTE 384 (642)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~--~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg 384 (642)
..+|-.........+.... . ....++|+|||++|+..+. ...|.++|+.+++...... ...+..+.|+|++
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~---d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~ 181 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK---DICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK 181 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEECCCSSCEEEEEECSSC
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeC---CCeEEEEECCCCcEEEEEcCcCCceEEEEecCCC
Confidence 4444333222222222111 1 1245789999999888664 3578888998887554433 5678899999999
Q ss_pred CEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcccc-CCCCccCcEECCCCCeEEEEeCCCCceeEE
Q 039497 385 KHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE-ETGNNAFPSCSPDGKFLVFRSGRSGHKNLF 463 (642)
Q Consensus 385 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~ 463 (642)
..++++. ..++.+++|++.. +. ....+... ....+..+.|+|++..++.+...+ ..|.
T Consensus 182 ~~~l~s~------s~D~~v~iwd~~~--------~~-----~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d--g~v~ 240 (344)
T 4gqb_B 182 DSVFLSC------SEDNRILLWDTRC--------PK-----PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN--GTVS 240 (344)
T ss_dssp TTEEEEE------ETTSCEEEEETTS--------SS-----CEEECC----CCCEEEEEECSSCTTEEEEEETT--SEEE
T ss_pred CCceeee------ccccccccccccc--------cc-----eeeeeecceeeccceeeeecCCCCcceEEeccC--CcEE
Confidence 7655444 2378999999865 22 34444322 113456789999766554444333 3799
Q ss_pred EEECCCCccccceeeCCCCCCcccceeEecCCC-EEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccc
Q 039497 464 VLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD-LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRE 542 (642)
Q Consensus 464 ~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~-~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 542 (642)
+||+.+++. +..+..+...+..++|+|||. +|+..+.++. |++||+.+++...+ .++.+
T Consensus 241 ~wd~~~~~~---~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~--------i~vwd~~~~~~~~~--~~H~~------- 300 (344)
T 4gqb_B 241 LVDTKSTSC---VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS--------LAVLDSSLSELFRS--QAHRD------- 300 (344)
T ss_dssp EEESCC--C---CEEEECCSSCEEEEEECSSSSCCEEEEETTSC--------EEEECTTCCEEEEE--CCCSS-------
T ss_pred EEECCCCcE---EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe--------EEEEECCCCcEEEE--cCCCC-------
Confidence 999998886 677777777888999999995 4666666554 99999988865443 35555
Q ss_pred cccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497 543 RINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590 (642)
Q Consensus 543 ~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 590 (642)
.+..++|||||+.|+++....+ .|..|++...
T Consensus 301 ~V~~v~~sp~~~~llas~s~D~----------------~v~~w~v~~~ 332 (344)
T 4gqb_B 301 FVRDATWSPLNHSLLTTVGWDH----------------QVVHHVVPTE 332 (344)
T ss_dssp CEEEEEECSSSTTEEEEEETTS----------------CEEEEECCC-
T ss_pred CEEEEEEeCCCCeEEEEEcCCC----------------eEEEEECCCC
Confidence 6889999999988776654332 6777777654
No 79
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.76 E-value=2.5e-16 Score=175.71 Aligned_cols=306 Identities=11% Similarity=0.048 Sum_probs=197.4
Q ss_pred ceEeeCC-eEEEEEecCC-CceEEEEEecCCCcccccCCccceeeCCCC-------CccccceeecCCcEEEEEEeccCC
Q 039497 196 PTWSGDS-TIYFHRQADD-GWWSIFRVSFPENLEFLGFPIAPTRVTPPG-------VHCFTPAAFHDGKRLAVATRRKNR 266 (642)
Q Consensus 196 ~~wspdg-~~~~~~~~~~-g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~SpdG~~l~~~~~~~~~ 266 (642)
+..+||| +++|+..... ....||+++..++ ..+.++... ..+..++|||||++|+|...+.++
T Consensus 73 ~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~ 144 (695)
T 2bkl_A 73 STPSRRNGRFFYVRTHKDKEKAILYWRQGESG--------QEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAA 144 (695)
T ss_dssp CCCEEETTEEEEEEECTTCSSCEEEEEESTTS--------CCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTC
T ss_pred CCCEEECCEEEEEEEcCCCeEEEEEEEcCCCC--------CcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCC
Confidence 4556888 5667664332 2458999998776 556665432 245678899999999999888777
Q ss_pred ceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEE
Q 039497 267 NFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVF 346 (642)
Q Consensus 267 ~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 346 (642)
....|+++|+..+... . . .. +.......+.|||||+.|+|
T Consensus 145 ~~~~i~v~dl~tg~~~----------------------------------~-~---~~--~~~~~~~~~~wspDg~~l~~ 184 (695)
T 2bkl_A 145 DEAVLHVIDVDSGEWS----------------------------------K-V---DV--IEGGKYATPKWTPDSKGFYY 184 (695)
T ss_dssp SCCEEEEEETTTCCBC----------------------------------S-S---CC--BSCCTTCCCEECTTSSEEEE
T ss_pred ceEEEEEEECCCCCCc----------------------------------C-C---cc--cCcccccceEEecCCCEEEE
Confidence 7788999988332200 0 0 00 00011135688888888888
Q ss_pred EecCCC----------ceeEEEEECCCCCe--eEEeec----CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 347 NHDFEL----------NAGIKIAKSDGSKR--WTLIKD----RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 347 ~~~~~~----------~~~l~~~d~~~~~~--~~l~~~----~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
...... ..+||++++.++.. +.+... .....+.|||||++|++.+.. ......||.++.
T Consensus 185 ~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~-----~~~~~~l~~~~~ 259 (695)
T 2bkl_A 185 EWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILR-----GWSENDVYWKRP 259 (695)
T ss_dssp EECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEE-----TTTEEEEEEECT
T ss_pred EEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeC-----CCCceEEEEEcC
Confidence 765322 45699999988763 233331 346688999999999998752 114566777654
Q ss_pred ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCC-CceeEEEEECCCCccccceeeCCCC--CCccc
Q 039497 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQLTDG--PWIDT 487 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~-g~~~l~~~d~~~g~~~~~~~~l~~~--~~~~~ 487 (642)
. ++ ..+.|.... .....+.+ +||+ |++.++.+ ....|+++++++++. ...+.+... ...+.
T Consensus 260 --~-----~~-----~~~~l~~~~-~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~l~ 323 (695)
T 2bkl_A 260 --G-----EK-----DFRLLVKGV-GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPAR-ASWKEIVPEDSSASLL 323 (695)
T ss_dssp --T-----CS-----SCEEEEECS-SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSG-GGCEEEECCCSSCEEE
T ss_pred --C-----CC-----ceEEeecCC-CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCc-cCCeEEecCCCCCeEE
Confidence 2 23 556666554 44455566 7888 88887754 467999999987651 001444433 23345
Q ss_pred ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCccc
Q 039497 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA 567 (642)
Q Consensus 488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~ 567 (642)
.+.|+ + ..|++....+ +..+|++++++++..+.+... ..+ .+..+++++|++.|++.......
T Consensus 324 ~~~~~-~-~~lv~~~~~d-----g~~~l~~~~~~g~~~~~l~~~-~~~-------~v~~~~~s~d~~~l~~~~ss~~~-- 386 (695)
T 2bkl_A 324 SVSIV-G-GHLSLEYLKD-----ATSEVRVATLKGKPVRTVQLP-GVG-------AASNLMGLEDLDDAYYVFTSFTT-- 386 (695)
T ss_dssp EEEEE-T-TEEEEEEEET-----TEEEEEEEETTCCEEEECCCS-SSS-------EECCCBSCTTCSEEEEEEEETTE--
T ss_pred EEEEE-C-CEEEEEEEEC-----CEEEEEEEeCCCCeeEEecCC-CCe-------EEEEeecCCCCCEEEEEEcCCCC--
Confidence 67777 4 4566665544 467899999877655555422 122 45667889999999988754332
Q ss_pred CCCCCCCCCCCCCcEEEEEcCCCceeeccCC
Q 039497 568 EPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN 598 (642)
Q Consensus 568 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~ 598 (642)
...||.||+.+++.+.++..
T Consensus 387 -----------P~~v~~~d~~~g~~~~l~~~ 406 (695)
T 2bkl_A 387 -----------PRQIYKTSVSTGKSELWAKV 406 (695)
T ss_dssp -----------EEEEEEEETTTCCEEEEEEC
T ss_pred -----------CCEEEEEECCCCcEEEEecC
Confidence 23899999998887777643
No 80
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.76 E-value=1.6e-15 Score=151.59 Aligned_cols=273 Identities=16% Similarity=0.178 Sum_probs=182.8
Q ss_pred cccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---cceEeeCCeEEEEEecC
Q 039497 135 LTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---WPTWSGDSTIYFHRQAD 211 (642)
Q Consensus 135 lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---~~~wspdg~~~~~~~~~ 211 (642)
+..+.......+|||||++||....+. .|.+|++.+++..+....+.. .++|+||+.++++. ..
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg------------~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~ 85 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADK------------LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA-SD 85 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTS------------CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE-ET
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCC------------eEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEE-CC
Confidence 344444556789999999999987665 688999988876665543332 45999999888877 45
Q ss_pred CCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecC
Q 039497 212 DGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSA 291 (642)
Q Consensus 212 ~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~sp 291 (642)
++ .|..+++.++. ....+..+...+..++|+|++++|+....++ .+.+||+...
T Consensus 86 d~--~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~------------ 139 (312)
T 4ery_A 86 DK--TLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE-----SVRIWDVKTG------------ 139 (312)
T ss_dssp TS--EEEEEETTTCC-------EEEEEECCSSCEEEEEECSSSSEEEEEETTS-----CEEEEETTTC------------
T ss_pred CC--EEEEEECCCCc-------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC------------
Confidence 67 45555666653 4455666666677889999999988865444 7889987321
Q ss_pred CCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee
Q 039497 292 NSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK 371 (642)
Q Consensus 292 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~ 371 (642)
+.+... ...... ...+.|+|+|+.|+.... ...|.++|+..++......
T Consensus 140 --~~~~~~-------------------~~~~~~-------v~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~~~~~~~ 188 (312)
T 4ery_A 140 --KCLKTL-------------------PAHSDP-------VSAVHFNRDGSLIVSSSY---DGLCRIWDTASGQCLKTLI 188 (312)
T ss_dssp --CEEEEE-------------------CCCSSC-------EEEEEECTTSSEEEEEET---TSCEEEEETTTCCEEEEEC
T ss_pred --EEEEEe-------------------cCCCCc-------EEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeeEEe
Confidence 111100 000001 124589999998877654 3578889998776544332
Q ss_pred ---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCC-CccCcEEC-CC
Q 039497 372 ---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETG-NNAFPSCS-PD 446 (642)
Q Consensus 372 ---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~S-pD 446 (642)
...+..+.|+|+++.|+..+. ++.+++|++.. +. ....+..+... ......++ ++
T Consensus 189 ~~~~~~~~~~~~~~~~~~l~~~~~-------d~~i~iwd~~~--------~~-----~~~~~~~~~~~~~~~~~~~~~~~ 248 (312)
T 4ery_A 189 DDDNPPVSFVKFSPNGKYILAATL-------DNTLKLWDYSK--------GK-----CLKTYTGHKNEKYCIFANFSVTG 248 (312)
T ss_dssp CSSCCCEEEEEECTTSSEEEEEET-------TTEEEEEETTT--------TE-----EEEEECSSCCSSSCCCEEEECSS
T ss_pred ccCCCceEEEEECCCCCEEEEEcC-------CCeEEEEECCC--------Cc-----EEEEEEecCCceEEEEEEEEeCC
Confidence 345677899999999988764 67899998754 11 33344333211 11223444 56
Q ss_pred CCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEec
Q 039497 447 GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN 503 (642)
Q Consensus 447 g~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~ 503 (642)
+++|+..+ . +..|++||+.+++. +..+..+...+..++|+|+++.|+..+.
T Consensus 249 ~~~l~sg~-~--dg~i~vwd~~~~~~---~~~~~~h~~~v~~~~~~p~~~~l~s~~~ 299 (312)
T 4ery_A 249 GKWIVSGS-E--DNLVYIWNLQTKEI---VQKLQGHTDVVISTACHPTENIIASAAL 299 (312)
T ss_dssp SCEEEECC-T--TSCEEEEETTTCCE---EEEECCCSSCEEEEEECSSSSEEEEEEC
T ss_pred CcEEEEEC-C--CCEEEEEECCCchh---hhhhhccCCcEEEEeecCcCCceEEEEc
Confidence 76666544 2 34799999998886 6677777777888999999999888764
No 81
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.76 E-value=6.2e-16 Score=160.08 Aligned_cols=288 Identities=12% Similarity=0.114 Sum_probs=186.6
Q ss_pred CCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecC-----------------C----Ccc
Q 039497 138 YGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCER-----------------G----GWP 196 (642)
Q Consensus 138 ~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-----------------~----~~~ 196 (642)
+.......+|||||++||...++ .+.+|++.+++........ . ..+
T Consensus 63 h~~~V~~v~fspdg~~la~g~~~-------------~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v 129 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGCNK-------------TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV 129 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEECBS-------------CEEEEETTTCCEEEEECC-----------------CCCCBEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEcCC-------------cEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEE
Confidence 45556778999999999986532 4778888877654332211 0 135
Q ss_pred eEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEe
Q 039497 197 TWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL 276 (642)
Q Consensus 197 ~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~ 276 (642)
+|+|||+++++. ..++...| +++.++. ....+..+...+..++|+|+|++|+....++ .+.+||+
T Consensus 130 ~~s~dg~~l~s~-~~d~~i~i--wd~~~~~-------~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~-----~v~iwd~ 194 (393)
T 1erj_A 130 CFSPDGKFLATG-AEDRLIRI--WDIENRK-------IVMILQGHEQDIYSLDYFPSGDKLVSGSGDR-----TVRIWDL 194 (393)
T ss_dssp EECTTSSEEEEE-ETTSCEEE--EETTTTE-------EEEEECCCSSCEEEEEECTTSSEEEEEETTS-----EEEEEET
T ss_pred EECCCCCEEEEE-cCCCeEEE--EECCCCc-------EEEEEccCCCCEEEEEEcCCCCEEEEecCCC-----cEEEEEC
Confidence 899999988887 56775444 4666653 3455666766788899999999998865544 8999987
Q ss_pred ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcC-CCCEEEEEecCCCcee
Q 039497 277 TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSP-DGGLIVFNHDFELNAG 355 (642)
Q Consensus 277 ~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~ 355 (642)
.. ++.+.... ... ......|+| +|+.|+..+. ...
T Consensus 195 ~~--------------~~~~~~~~-----------------~~~----------~v~~~~~~~~~~~~l~~~s~---d~~ 230 (393)
T 1erj_A 195 RT--------------GQCSLTLS-----------------IED----------GVTTVAVSPGDGKYIAAGSL---DRA 230 (393)
T ss_dssp TT--------------TEEEEEEE-----------------CSS----------CEEEEEECSTTCCEEEEEET---TSC
T ss_pred CC--------------CeeEEEEE-----------------cCC----------CcEEEEEECCCCCEEEEEcC---CCc
Confidence 32 11111110 000 012347888 8888877654 356
Q ss_pred EEEEECCCCCeeEEe---------ecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCC-cccc
Q 039497 356 IKIAKSDGSKRWTLI---------KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNRE-EIPC 425 (642)
Q Consensus 356 l~~~d~~~~~~~~l~---------~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~ 425 (642)
|.++|+.++...... ....+..+.|+|||+.|+..+. ++.+++|++.. ......... ....
T Consensus 231 v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~-------d~~v~~wd~~~--~~~~~~~~~~~~~~ 301 (393)
T 1erj_A 231 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL-------DRSVKLWNLQN--ANNKSDSKTPNSGT 301 (393)
T ss_dssp EEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET-------TSEEEEEEC-----------------C
T ss_pred EEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC-------CCEEEEEECCC--CCCcccccCCCCCc
Confidence 888898877654332 1345788999999999987764 78999999864 100000000 0000
Q ss_pred ceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEec------CCCEEE
Q 039497 426 DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP------KGDLIA 499 (642)
Q Consensus 426 ~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~sp------dG~~l~ 499 (642)
....+..+. ..+..++|+|++++|+..+.+ ..|.+||+.+++. +..+..+...+..++|++ +++.|+
T Consensus 302 ~~~~~~~h~-~~v~~~~~~~~~~~l~sgs~D---~~v~iwd~~~~~~---~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~ 374 (393)
T 1erj_A 302 CEVTYIGHK-DFVLSVATTQNDEYILSGSKD---RGVLFWDKKSGNP---LLMLQGHRNSVISVAVANGSSLGPEYNVFA 374 (393)
T ss_dssp EEEEEECCS-SCEEEEEECGGGCEEEEEETT---SEEEEEETTTCCE---EEEEECCSSCEEEEEECSSCTTCTTCEEEE
T ss_pred ceEEEeccc-CcEEEEEECCCCCEEEEEeCC---CeEEEEECCCCeE---EEEECCCCCCEEEEEecCCcCcCCCCCEEE
Confidence 122333444 567789999999999877743 4799999998886 566666666677777765 788888
Q ss_pred EEecCCCCCCCCceeEEEEeCC
Q 039497 500 FSSNRHNPDNVEAFSLYVIKPD 521 (642)
Q Consensus 500 ~~~~~~~~~~~~~~~l~~~d~~ 521 (642)
..+.++. |.+|++.
T Consensus 375 sgs~Dg~--------i~iW~~~ 388 (393)
T 1erj_A 375 TGSGDCK--------ARIWKYK 388 (393)
T ss_dssp EEETTSE--------EEEEEEE
T ss_pred EECCCCc--------EEECccc
Confidence 7777654 7888764
No 82
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.76 E-value=1.8e-15 Score=153.77 Aligned_cols=285 Identities=13% Similarity=0.059 Sum_probs=164.7
Q ss_pred CCceEEEEEecCCCcccccCCccceee--CCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCee
Q 039497 212 DGWWSIFRVSFPENLEFLGFPIAPTRV--TPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFV 289 (642)
Q Consensus 212 ~g~~~l~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 289 (642)
++...+|.++..++ ..+.+ .........++|||||+ |+++.... ....+++|++...
T Consensus 15 ~~~i~v~~~d~~tg--------~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~--~~~~v~~~~~~~g---------- 73 (347)
T 3hfq_A 15 SQGIYQGTLDTTAK--------TLTNDGLLAATQNPTYLALSAKDC-LYSVDKED--DEGGIAAWQIDGQ---------- 73 (347)
T ss_dssp CCEEEEEEEETTTT--------EEEEEEEEEECSCCCCEEECTTCE-EEEEEEET--TEEEEEEEEEETT----------
T ss_pred CCCEEEEEEcCCCC--------eEEEeeeeeccCCcceEEEccCCe-EEEEEecC--CCceEEEEEecCC----------
Confidence 34467888888776 33332 22233456788999999 76655431 2347888887211
Q ss_pred cCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECC-CCCeeE
Q 039497 290 SANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD-GSKRWT 368 (642)
Q Consensus 290 spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~-~~~~~~ 368 (642)
+ +-.. . .+.........++|+|||++|++....+ ..|.+++++ .+....
T Consensus 74 ----~-~~~~----------------~-------~~~~~~~~p~~~a~spdg~~l~~~~~~~--~~v~v~~~~~~g~~~~ 123 (347)
T 3hfq_A 74 ----T-AHKL----------------N-------TVVAPGTPPAYVAVDEARQLVYSANYHK--GTAEVMKIAADGALTL 123 (347)
T ss_dssp ----E-EEEE----------------E-------EEEEESCCCSEEEEETTTTEEEEEETTT--TEEEEEEECTTSCEEE
T ss_pred ----c-EEEe----------------e-------eeecCCCCCEEEEECCCCCEEEEEeCCC--CEEEEEEeCCCCCeee
Confidence 0 0000 0 0000111223568999999888876433 455556653 333333
Q ss_pred Eee---cC----------CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE---ccc
Q 039497 369 LIK---DR----------TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI---LTK 432 (642)
Q Consensus 369 l~~---~~----------~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---l~~ 432 (642)
+.. .+ .+..+.|+|||+ ++++.. ....+.+|++.. ++ .... +..
T Consensus 124 ~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~------~~~~v~~~~~~~--------~g-----~~~~~~~~~~ 183 (347)
T 3hfq_A 124 TDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDL------GSDKVYVYNVSD--------AG-----QLSEQSVLTM 183 (347)
T ss_dssp EEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEET------TTTEEEEEEECT--------TS-----CEEEEEEEEC
T ss_pred cceeecCCCCCCccccCCCceEEEECCCCc-EEEEeC------CCCEEEEEEECC--------CC-----cEEEeeeEEc
Confidence 322 11 255689999999 766663 367888898864 22 2221 122
Q ss_pred cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC------CcccceeEecCCCEEEEEecCCC
Q 039497 433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP------WIDTMPSWSPKGDLIAFSSNRHN 506 (642)
Q Consensus 433 ~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~------~~~~~~~~spdG~~l~~~~~~~~ 506 (642)
........++|+|||++|+++....+...+|.++..+|+. .....+.... .....++|||||++|++......
T Consensus 184 ~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~ 262 (347)
T 3hfq_A 184 EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF-TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYN 262 (347)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE-EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTT
T ss_pred CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce-EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCC
Confidence 1212455689999999998887665544555555545653 0011222111 22456899999999887765432
Q ss_pred CCCCCceeEEEEeCC-CCceEEeeecCC-CCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEE
Q 039497 507 PDNVEAFSLYVIKPD-GSGLRRIHVAGP-EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYV 584 (642)
Q Consensus 507 ~~~~~~~~l~~~d~~-~~~~~~l~~~~~-~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 584 (642)
.|.+|+++ .+..+.+..... .. .+..++|||||++|++.....+.. .||.
T Consensus 263 -------~v~v~~~~~~g~~~~~~~~~~~~~-------~~~~~~~spdg~~l~v~~~~~~~v--------------~v~~ 314 (347)
T 3hfq_A 263 -------TLAVFAVTADGHLTLIQQISTEGD-------FPRDFDLDPTEAFVVVVNQNTDNA--------------TLYA 314 (347)
T ss_dssp -------EEEEEEECGGGCEEEEEEEECSSS-------CCCEEEECTTSSEEEEEETTTTEE--------------EEEE
T ss_pred -------EEEEEEECCCCcEEEeEEEecCCC-------CcCeEEECCCCCEEEEEEcCCCcE--------------EEEE
Confidence 37888875 334444332211 11 356899999999998877654322 5666
Q ss_pred EEcCCCceeecc
Q 039497 585 VKLDGSGLRRLT 596 (642)
Q Consensus 585 ~~~~~~~~~~lt 596 (642)
++..+++++.+.
T Consensus 315 ~d~~tg~l~~~~ 326 (347)
T 3hfq_A 315 RDLTSGKLSLLQ 326 (347)
T ss_dssp ECTTTCCEEEEE
T ss_pred EeCCCCeEEecc
Confidence 677777777655
No 83
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.76 E-value=1.6e-16 Score=177.85 Aligned_cols=242 Identities=14% Similarity=0.121 Sum_probs=158.8
Q ss_pred ccEEcCCCCEEEEEecCCCc--eeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcc-------cCCCeE
Q 039497 334 FPSFSPDGGLIVFNHDFELN--AGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQ-------SERATV 403 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~--~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~-------~~~~~~ 403 (642)
.++|||||++|+|.....+. ..|+++|+++++...+.. ...+..+.|||||+.|+|++...... ......
T Consensus 129 ~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~ 208 (710)
T 2xdw_A 129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQ 208 (710)
T ss_dssp EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCC
T ss_pred EEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCC
Confidence 57999999999997764443 499999999998776544 33367899999999999998542100 001123
Q ss_pred EEEEEEeecCCCCCCCCCccccceEEccccC--CCCccCcEECCCCCeEEEEeCCCC--ceeEEEEECCC------Cccc
Q 039497 404 QIARVSFQLDPSDDNNREEIPCDVKILTKEE--TGNNAFPSCSPDGKFLVFRSGRSG--HKNLFVLDAVN------GEFN 473 (642)
Q Consensus 404 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~SpDg~~l~~~~~~~g--~~~l~~~d~~~------g~~~ 473 (642)
+||..+. . ++.. ....+.... ......+.|||||++|++.+.+.. ..+||++|+.+ ++.
T Consensus 209 ~v~~~~l--~-----t~~~---~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~- 277 (710)
T 2xdw_A 209 KLYYHVL--G-----TDQS---EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL- 277 (710)
T ss_dssp EEEEEET--T-----SCGG---GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-
T ss_pred EEEEEEC--C-----CCcc---cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc-
Confidence 3554444 1 1210 112332221 133457899999999999886443 56999999986 520
Q ss_pred cceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc---eEEeeecCCCCCCCcccccccceEEc
Q 039497 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG---LRRIHVAGPEGSGDVDRERINHVCFS 550 (642)
Q Consensus 474 ~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~S 550 (642)
..+.|+...... ...|+|||++|+|.++... ....|+++|++++. .+.++...... .+..+.|+
T Consensus 278 -~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~----~~~~l~~~d~~~~~~~~~~~l~~~~~~~-------~~~~~~~~ 344 (710)
T 2xdw_A 278 -KWVKLIDNFEGE-YDYVTNEGTVFTFKTNRHS----PNYRLINIDFTDPEESKWKVLVPEHEKD-------VLEWVACV 344 (710)
T ss_dssp -CCEEEECSSSSC-EEEEEEETTEEEEEECTTC----TTCEEEEEETTSCCGGGCEEEECCCSSC-------EEEEEEEE
T ss_pred -ceEEeeCCCCcE-EEEEeccCCEEEEEECCCC----CCCEEEEEeCCCCCcccceeccCCCCCC-------eEEEEEEE
Confidence 136666554333 3469999999999987643 46789999998874 35665432212 35567888
Q ss_pred CCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcC-CCceeeccCCCCCCCCcEEecCCceE
Q 039497 551 ADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLD-GSGLRRLTWNGYENGTPAWHPGNQLD 614 (642)
Q Consensus 551 ~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~lt~~~~~~~~~~~s~dg~~~ 614 (642)
++ ..|+++....+.. .||++++. ++.+++|+...+.+..++++||+..+
T Consensus 345 ~~-~~lv~~~~~~g~~--------------~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l 394 (710)
T 2xdw_A 345 RS-NFLVLCYLHDVKN--------------TLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEI 394 (710)
T ss_dssp TT-TEEEEEEEETTEE--------------EEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEE
T ss_pred cC-CEEEEEEEECCEE--------------EEEEEECCCCCEEEecCCCCceEEEEecCCCCCEE
Confidence 54 5566666655432 89999984 44467777665555667888988554
No 84
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.75 E-value=2.9e-15 Score=168.30 Aligned_cols=306 Identities=13% Similarity=0.099 Sum_probs=190.6
Q ss_pred ccccCCCEEEEEEeccCCCcccccccceEEEEcc---CCceEecccCC-------CccCCceeCCCCcEEEEEecCCCCC
Q 039497 95 RPVARNNKLFFISAHEQPDQIFKSWSALYSTDLK---ASKFTRLTPYG-------VVDYSPSVSYSGKFIAVASYESRPW 164 (642)
Q Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~lt~~~-------~~~~~~~~SPDG~~la~~~~~~~~~ 164 (642)
.|..+|+.++|......... ..||+++.. +++.++|.... .....++|||||++|||..+..
T Consensus 113 ~p~pdG~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~--- 184 (741)
T 1yr2_A 113 LPQRRGASVFYSWNSGLMNQ-----SQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDG--- 184 (741)
T ss_dssp CCEEETTEEEEEEECSSCSS-----CEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEET---
T ss_pred CCEEECCEEEEEEEcCCCeE-----EEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCC---
Confidence 34458999999887543211 379999987 77777753321 1345689999999999998654
Q ss_pred CCCCCCCeeeEEEEEecCCCceeEeecCC--CcceEeeCCeEEEEEecCCC----------ceEEEEEecCCCcccccCC
Q 039497 165 PGEFHELNTDIVVFQESDPNKRVIVCERG--GWPTWSGDSTIYFHRQADDG----------WWSIFRVSFPENLEFLGFP 232 (642)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~wspdg~~~~~~~~~~g----------~~~l~~~~~~~~~~~~~~~ 232 (642)
......|+++++++|+..+...... ..++||||..++|++..... ..+||.+++.++..
T Consensus 185 ----G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~----- 255 (741)
T 1yr2_A 185 ----GSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS----- 255 (741)
T ss_dssp ----TCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGG-----
T ss_pred ----CCceEEEEEEECCCCCCCCccCCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCch-----
Confidence 0123689999999999776543322 46899999335555532221 45799999877631
Q ss_pred ccceeeCC-CC--CccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCC
Q 039497 233 IAPTRVTP-PG--VHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQ 309 (642)
Q Consensus 233 ~~~~~l~~-~~--~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~ 309 (642)
....+.. .+ .....+.|||||++|++...+.......++++|+.... ++
T Consensus 256 -~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~------------~~--------------- 307 (741)
T 1yr2_A 256 -ADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGK------------IG--------------- 307 (741)
T ss_dssp -GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTE------------EC---------------
T ss_pred -hCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCC------------Cc---------------
Confidence 1122322 22 23556788999999998776543234567777762210 00
Q ss_pred cccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCC-CceeEEEEECCCC--CeeEEee--cCCceeeeeecCC
Q 039497 310 STIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFE-LNAGIKIAKSDGS--KRWTLIK--DRTAFYNSWSPTE 384 (642)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~-~~~~l~~~d~~~~--~~~~l~~--~~~~~~~~~spdg 384 (642)
. ...+. .........++|||++|+|....+ ....|++++++++ +.+.+.. ...+..+.|+ +
T Consensus 308 -~----------~~~l~-~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~ 373 (741)
T 1yr2_A 308 -P----------VTALI-PDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--G 373 (741)
T ss_dssp -C----------CEEEE-CSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--B
T ss_pred -c----------cEEec-CCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--C
Confidence 0 00000 000111123568999999987643 3678999999884 4455554 2234445555 5
Q ss_pred CEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCC-CCceeEE
Q 039497 385 KHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR-SGHKNLF 463 (642)
Q Consensus 385 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~-~g~~~l~ 463 (642)
+.|++... .+...+||.++. + ++ ..+.+.......+..+.++||++.|+|.... .....||
T Consensus 374 ~~lv~~~~------~dg~~~l~~~~~--~-----g~-----~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~ 435 (741)
T 1yr2_A 374 NRLFASYI------HDAKSQVLAFDL--D-----GK-----PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVL 435 (741)
T ss_dssp TEEEEEEE------ETTEEEEEEEET--T-----SC-----EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEE
T ss_pred CEEEEEEE------ECCEEEEEEEeC--C-----CC-----ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEE
Confidence 66776653 366788888876 3 22 4566654322556778899999988876532 3356899
Q ss_pred EEECCCCccccceeeCCC
Q 039497 464 VLDAVNGEFNGDIRQLTD 481 (642)
Q Consensus 464 ~~d~~~g~~~~~~~~l~~ 481 (642)
++|+.+|+. +.+..
T Consensus 436 ~~d~~tg~~----~~l~~ 449 (741)
T 1yr2_A 436 ALDPATAKT----TPWEP 449 (741)
T ss_dssp EEETTTTEE----EECSC
T ss_pred EEECCCCcE----EEEec
Confidence 999998873 66654
No 85
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.75 E-value=1.1e-15 Score=152.16 Aligned_cols=278 Identities=10% Similarity=-0.005 Sum_probs=187.5
Q ss_pred eeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceE
Q 039497 236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHL 315 (642)
Q Consensus 236 ~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~ 315 (642)
..+..+...+..++|||||++|+....++ .+.+||+... +.+...
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg-----~v~lWd~~~~--------------~~~~~~---------------- 51 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSG-----RVELWNYETQ--------------VEVRSI---------------- 51 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTS-----EEEEEETTTT--------------EEEEEE----------------
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCC-----cEEEEECCCC--------------ceeEEe----------------
Confidence 34555555688899999999998865444 8899987321 111000
Q ss_pred eeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcC
Q 039497 316 EPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTG 393 (642)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~ 393 (642)
..... ......|+|++++|+..+. ...|.++|+.+++...... ...+..+.|+|+++.|+..+.
T Consensus 52 ---~~~~~-------~v~~~~~~~~~~~l~s~s~---d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~- 117 (304)
T 2ynn_A 52 ---QVTET-------PVRAGKFIARKNWIIVGSD---DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD- 117 (304)
T ss_dssp ---ECCSS-------CEEEEEEEGGGTEEEEEET---TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEET-
T ss_pred ---eccCC-------cEEEEEEeCCCCEEEEECC---CCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECC-
Confidence 00000 1124478999998888664 3678889998877544433 567889999999999887764
Q ss_pred CCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECC-CCCeEEEEeCCCCceeEEEEECCCCcc
Q 039497 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSP-DGKFLVFRSGRSGHKNLFVLDAVNGEF 472 (642)
Q Consensus 394 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~ 472 (642)
++.+++|++.. +. . ....+..+. ..+..++|+| |++.|+..+. +..|.+||+.+++.
T Consensus 118 ------D~~v~lWd~~~--------~~-~---~~~~~~~h~-~~v~~v~~~p~~~~~l~sgs~---D~~v~iwd~~~~~~ 175 (304)
T 2ynn_A 118 ------DLTVKLWNWEN--------NW-A---LEQTFEGHE-HFVMCVAFNPKDPSTFASGCL---DRTVKVWSLGQSTP 175 (304)
T ss_dssp ------TSCEEEEEGGG--------TT-E---EEEEECCCC-SCEEEEEECTTCTTEEEEEET---TSEEEEEETTCSSC
T ss_pred ------CCeEEEEECCC--------Cc-c---hhhhhcccC-CcEEEEEECCCCCCEEEEEeC---CCeEEEEECCCCCc
Confidence 78999999865 21 0 233444454 6788899999 5677776663 33799999977654
Q ss_pred ccceeeCCC-CCCcccceeEec--CCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEE
Q 039497 473 NGDIRQLTD-GPWIDTMPSWSP--KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCF 549 (642)
Q Consensus 473 ~~~~~~l~~-~~~~~~~~~~sp--dG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 549 (642)
...+.. ....+....|+| ++++|+..+.++. |.+||+.+++...... ++.. .+..+.|
T Consensus 176 ---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~--------i~iWd~~~~~~~~~~~-~h~~-------~v~~~~~ 236 (304)
T 2ynn_A 176 ---NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT--------IKIWDYQTKSCVATLE-GHMS-------NVSFAVF 236 (304)
T ss_dssp ---SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSE--------EEEEETTTTEEEEEEE-CCSS-------CEEEEEE
T ss_pred ---cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCe--------EEEEeCCCCccceeeC-CCCC-------CEEEEEE
Confidence 333332 334455667765 7888888877654 9999998876544333 4444 5778999
Q ss_pred cCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCc--eEEeecCC
Q 039497 550 SADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQ--LDLGKLRL 620 (642)
Q Consensus 550 S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~--~~~~~~~~ 620 (642)
+|+++.|+..+.++ .|.+||..+++ ...+..+...+..++|+|++. ++++....
T Consensus 237 ~p~~~~l~s~s~Dg-----------------~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~ 293 (304)
T 2ynn_A 237 HPTLPIIISGSEDG-----------------TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN 293 (304)
T ss_dssp CSSSSEEEEEETTS-----------------CEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT
T ss_pred CCCCCEEEEEcCCC-----------------eEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC
Confidence 99999888777654 68888988766 445555555566889999874 45554433
No 86
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.75 E-value=1.1e-15 Score=154.64 Aligned_cols=310 Identities=11% Similarity=0.091 Sum_probs=178.4
Q ss_pred eEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCC
Q 039497 203 TIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNF 282 (642)
Q Consensus 203 ~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~ 282 (642)
.++|+....++...+|.++. ++.. ..............++|+|||++|+++.... ..+.+|++...
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~----~~v~~~~~~~~--- 70 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNH-EGAL------TLTQVVDVPGQVQPMVVSPDKRYLYVGVRPE----FRVLAYRIAPD--- 70 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECT-TSCE------EEEEEEECSSCCCCEEECTTSSEEEEEETTT----TEEEEEEECTT---
T ss_pred EEEEEeCCCCCeEEEEEECC-CCcE------EEeeeEecCCCCceEEECCCCCEEEEeecCC----CeEEEEEecCC---
Confidence 45555545567556665543 3310 1122223344566789999999988865442 37778876311
Q ss_pred cccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECC
Q 039497 283 HHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD 362 (642)
Q Consensus 283 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~ 362 (642)
.|+..... .+. .......+.|+|||++|++.... ...|.+++++
T Consensus 71 ---------~~~~~~~~-----------------~~~--------~~~~~~~~~~s~dg~~l~~~~~~--~~~i~~~d~~ 114 (343)
T 1ri6_A 71 ---------DGALTFAA-----------------ESA--------LPGSLTHISTDHQGQFVFVGSYN--AGNVSVTRLE 114 (343)
T ss_dssp ---------TCCEEEEE-----------------EEE--------CSSCCSEEEECTTSSEEEEEETT--TTEEEEEEEE
T ss_pred ---------CCceeecc-----------------ccc--------cCCCCcEEEEcCCCCEEEEEecC--CCeEEEEECC
Confidence 11110000 000 00122356899999988887643 3456666663
Q ss_pred CCCe---eEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceE-----Ecccc
Q 039497 363 GSKR---WTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVK-----ILTKE 433 (642)
Q Consensus 363 ~~~~---~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~ 433 (642)
.+.. ..... ...+..+.|+|||+.|++... .+..+.+|++.. + + ... .+...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~~~~v~~~d~~~--~------~-----~~~~~~~~~~~~~ 175 (343)
T 1ri6_A 115 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL------KQDRICLFTVSD--D------G-----HLVAQDPAEVTTV 175 (343)
T ss_dssp TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG------GGTEEEEEEECT--T------S-----CEEEEEEEEEECS
T ss_pred CCccccccccccCCCCceEEEECCCCCEEEEecC------CCCEEEEEEecC--C------C-----ceeeecccccccC
Confidence 2221 12222 445778999999999988763 367888888854 2 2 222 22222
Q ss_pred CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC--CCccccceeeC---CCC---CCcccceeEecCCCEEEEEecCC
Q 039497 434 ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV--NGEFNGDIRQL---TDG---PWIDTMPSWSPKGDLIAFSSNRH 505 (642)
Q Consensus 434 ~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~--~g~~~~~~~~l---~~~---~~~~~~~~~spdG~~l~~~~~~~ 505 (642)
.......+.|+|||++|++....++ .|.+|+++ +|+. .....+ ... ......++|+|||++|++.....
T Consensus 176 ~~~~~~~~~~~pdg~~l~~~~~~~~--~i~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~ 252 (343)
T 1ri6_A 176 EGAGPRHMVFHPNEQYAYCVNELNS--SVDVWELKDPHGNI-ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA 252 (343)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTT--EEEEEESSCTTSCC-EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT
T ss_pred CCCCcceEEECCCCCEEEEEeCCCC--EEEEEEecCCCCcE-EEEeeccccCccccccCCccceEECCCCCEEEEEecCC
Confidence 2134556899999999988875443 68888874 3542 001111 111 11233589999999988776433
Q ss_pred CCCCCCceeEEEEeCC--CCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEE
Q 039497 506 NPDNVEAFSLYVIKPD--GSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLY 583 (642)
Q Consensus 506 ~~~~~~~~~l~~~d~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 583 (642)
..|++|+++ ++..+.+....... .+..++|+|||++|++.....+.. .||
T Consensus 253 -------~~i~v~d~~~~~~~~~~~~~~~~~~-------~~~~~~~s~dg~~l~~~~~~~~~v--------------~v~ 304 (343)
T 1ri6_A 253 -------SLITVFSVSEDGSVLSKEGFQPTET-------QPRGFNVDHSGKYLIAAGQKSHHI--------------SVY 304 (343)
T ss_dssp -------TEEEEEEECTTSCCEEEEEEEECSS-------SCCCEEECTTSSEEEEECTTTCEE--------------EEE
T ss_pred -------CEEEEEEEcCCCCceEEeeeecCCC-------ccceEEECCCCCEEEEecCCCCeE--------------EEE
Confidence 248888887 55555443322222 356799999999998887543321 566
Q ss_pred EEEcCCCceeeccC--CCCCCCCcEEecCCc
Q 039497 584 VVKLDGSGLRRLTW--NGYENGTPAWHPGNQ 612 (642)
Q Consensus 584 ~~~~~~~~~~~lt~--~~~~~~~~~~s~dg~ 612 (642)
.++..++.++++.. .+.....++|.++.+
T Consensus 305 ~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 305 EIVGEQGLLHEKGRYAVGQGPMWVVVNAHEG 335 (343)
T ss_dssp EEETTTTEEEEEEEEECSSSCCEEEEEEEC-
T ss_pred EEcCCCceeeEccccccCCCCeeEEEEcccC
Confidence 66777776655543 123456777777653
No 87
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.75 E-value=7.6e-16 Score=158.62 Aligned_cols=299 Identities=13% Similarity=0.081 Sum_probs=191.4
Q ss_pred EecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC---CcceEeeCCeEEEEEe
Q 039497 133 TRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG---GWPTWSGDSTIYFHRQ 209 (642)
Q Consensus 133 ~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~wspdg~~~~~~~ 209 (642)
+.|..+.......+|||||++||..+.+. .|.+|++.+++.......+. ...+|+|||+++++.
T Consensus 60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~------------~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~- 126 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDG------------RLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACG- 126 (380)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTS------------EEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEEC-
T ss_pred ecccccccEEEEEEEcCCCCEEEEEeCCC------------eEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEe-
Confidence 44566666677889999999999988766 79999998887655444333 246999999988887
Q ss_pred cCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCc-EEEEEEeccCCceeeEEEEEeecCCCCcccCCe
Q 039497 210 ADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGK-RLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPF 288 (642)
Q Consensus 210 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~-~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 288 (642)
..++...||.+....... ........+..+...+....|+|++. .|+.... ...+.+||+...
T Consensus 127 ~~d~~v~iw~~~~~~~~~--~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~-----D~~i~~wd~~~~--------- 190 (380)
T 3iz6_a 127 GLDSACSIFNLSSQADRD--GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG-----DQTCVLWDVTTG--------- 190 (380)
T ss_dssp CSSSCCEEEECCCCSSCC--CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECT-----TSCEEEECTTTC---------
T ss_pred eCCCcEEEEECCCCcccc--CCccceeeccCCCcceEEEEEecCCCCEEEEECC-----CCcEEEEEcCCC---------
Confidence 667877888765321100 00001233455655677788888754 4555333 348999998332
Q ss_pred ecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcC-CCCEEEEEecCCCceeEEEEECCC-CCe
Q 039497 289 VSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSP-DGGLIVFNHDFELNAGIKIAKSDG-SKR 366 (642)
Q Consensus 289 ~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~d~~~-~~~ 366 (642)
+.+....... ..+....+ ....|++ +++.|+..+. ...|.++|+.. +..
T Consensus 191 -----~~~~~~~~~~--------------~~~h~~~v-------~~~~~~~~~~~~l~sgs~---D~~v~~wd~~~~~~~ 241 (380)
T 3iz6_a 191 -----QRISIFGSEF--------------PSGHTADV-------LSLSINSLNANMFISGSC---DTTVRLWDLRITSRA 241 (380)
T ss_dssp -----CEEEEECCCS--------------SSSCCSCE-------EEEEECSSSCCEEEEEET---TSCEEEEETTTTCCC
T ss_pred -----cEEEEeeccc--------------CCCCccCe-------EEEEeecCCCCEEEEEEC---CCeEEEEECCCCCcc
Confidence 1111110000 00000000 1235655 7777766554 35678888863 333
Q ss_pred eEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC------CCCc
Q 039497 367 WTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE------TGNN 438 (642)
Q Consensus 367 ~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~ 438 (642)
..... ...+..+.|+|||+.|+..+. ++.+++|++.. +. ....+.... ...+
T Consensus 242 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~-------D~~i~lwd~~~--------~~-----~~~~~~~~~~~~~~~~~~v 301 (380)
T 3iz6_a 242 VRTYHGHEGDINSVKFFPDGQRFGTGSD-------DGTCRLFDMRT--------GH-----QLQVYNREPDRNDNELPIV 301 (380)
T ss_dssp CEEECCCSSCCCEEEECTTSSEEEEECS-------SSCEEEEETTT--------TE-----EEEEECCCCSSSCCSSCSC
T ss_pred eEEECCcCCCeEEEEEecCCCeEEEEcC-------CCeEEEEECCC--------Cc-----EEEEecccccccccccCce
Confidence 33322 567889999999999887763 78999999854 11 222222211 0135
Q ss_pred cCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC----CCCCCcccceeEecCCCEEEEEecCCCCCCCCcee
Q 039497 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL----TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFS 514 (642)
Q Consensus 439 ~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l----~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~ 514 (642)
..++|||+|++|+..+. ...|++||+.+++. ...+ ..+...+..++|+|||++|+..+.++.
T Consensus 302 ~~~~~s~~g~~l~~g~~---dg~i~vwd~~~~~~---~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~-------- 367 (380)
T 3iz6_a 302 TSVAFSISGRLLFAGYS---NGDCYVWDTLLAEM---VLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKN-------- 367 (380)
T ss_dssp SEEEECSSSSEEEEECT---TSCEEEEETTTCCE---EEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSC--------
T ss_pred EEEEECCCCCEEEEEEC---CCCEEEEECCCCce---EEEEecccCCCCCceEEEEECCCCCEEEEeeCCCC--------
Confidence 67899999999887653 34799999988775 3444 345566788999999999988887765
Q ss_pred EEEEeCCCC
Q 039497 515 LYVIKPDGS 523 (642)
Q Consensus 515 l~~~d~~~~ 523 (642)
|.+|++.+.
T Consensus 368 i~iW~~~~~ 376 (380)
T 3iz6_a 368 LKIWAFSGH 376 (380)
T ss_dssp EEEEECCSS
T ss_pred EEEEecCCC
Confidence 999998764
No 88
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.75 E-value=3.3e-15 Score=160.64 Aligned_cols=326 Identities=13% Similarity=0.075 Sum_probs=197.7
Q ss_pred ceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEe--cCCCceeEeecCC--Ccc
Q 039497 121 ALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQE--SDPNKRVIVCERG--GWP 196 (642)
Q Consensus 121 ~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~l~~~~~--~~~ 196 (642)
.|.+++..+++..............+|||||++|+....+. .|.+|++ .+++......... ..+
T Consensus 160 ~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~------------~V~v~D~~~~t~~~~~~i~~g~~p~~v 227 (543)
T 1nir_A 160 QIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDA------------RIDMIDLWAKEPTKVAEIKIGIEARSV 227 (543)
T ss_dssp EEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTS------------EEEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred eEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCC------------eEEEEECcCCCCcEEEEEecCCCcceE
Confidence 57777988887654332222244578999999999887544 7999999 6655433222211 245
Q ss_pred eEee----CCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCC-----------CCccccceeecCCcEEEEEE
Q 039497 197 TWSG----DSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPP-----------GVHCFTPAAFHDGKRLAVAT 261 (642)
Q Consensus 197 ~wsp----dg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~SpdG~~l~~~~ 261 (642)
+|+| ||+.+|+.+..++ .|..+|..+++ ....+... +..+..+.+||+++.+++..
T Consensus 228 a~sp~~~~dg~~l~v~~~~~~--~v~v~D~~t~~-------~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~ 298 (543)
T 1nir_A 228 ESSKFKGYEDRYTIAGAYWPP--QFAIMDGETLE-------PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 298 (543)
T ss_dssp EECCSTTCTTTEEEEEEEESS--EEEEEETTTCC-------EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred EeCCCcCCCCCEEEEEEccCC--eEEEEeccccc-------cceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence 8999 9988888754456 45566776663 22333221 11344567788888777654
Q ss_pred eccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCC
Q 039497 262 RRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDG 341 (642)
Q Consensus 262 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 341 (642)
... ..|+++|+..... + ... .+. .........|+|||
T Consensus 299 ~~~----g~i~vvd~~~~~~--------------l-----------------~~~-------~i~-~~~~~~~~~~spdg 335 (543)
T 1nir_A 299 KET----GKVLLVNYKDIDN--------------L-----------------TVT-------SIG-AAPFLHDGGWDSSH 335 (543)
T ss_dssp TTT----TEEEEEECTTSSS--------------C-----------------EEE-------EEE-CCSSCCCEEECTTS
T ss_pred CCC----CeEEEEEecCCCc--------------c-----------------eeE-------Eec-cCcCccCceECCCC
Confidence 322 3677777621110 0 000 000 00111356899999
Q ss_pred CEEEEEecCCCceeEEEEECCCCCeeEEeecC----Cceeee-eecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCC
Q 039497 342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIKDR----TAFYNS-WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD 416 (642)
Q Consensus 342 ~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~----~~~~~~-~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 416 (642)
++++.... ....|.++|+++++.......+ ...... ++|++..++++.. ..+..+.+|+++. .+..
T Consensus 336 ~~l~va~~--~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~-----~~d~~V~v~d~~~--~~~~ 406 (543)
T 1nir_A 336 RYFMTAAN--NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH-----LGDGSISLIGTDP--KNHP 406 (543)
T ss_dssp CEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEB-----SSSSEEEEEECCT--TTCT
T ss_pred CEEEEEec--CCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEecc-----CCCceEEEEEeCC--CCCc
Confidence 98766553 3457888999988766544411 111233 4788777766653 2367888888865 1000
Q ss_pred CCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCC----CceeEEEEECCCCccccce-eeC--------CCCC
Q 039497 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRS----GHKNLFVLDAVNGEFNGDI-RQL--------TDGP 483 (642)
Q Consensus 417 ~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~----g~~~l~~~d~~~g~~~~~~-~~l--------~~~~ 483 (642)
.... + ..+.+..+. .....+.+||||++|+..+.-+ ....|.+||+++++. . +.| ..+.
T Consensus 407 ~~~~-~---~v~~l~~~g-~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~---~~~~~~v~~~~~~~~~~ 478 (543)
T 1nir_A 407 QYAW-K---KVAELQGQG-GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA---KYQVLPIAEWADLGEGA 478 (543)
T ss_dssp TTBT-S---EEEEEECSC-SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTS---CCEEECHHHHHCCCSSC
T ss_pred hhcC-e---EEEEEEcCC-CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCC---CeEEeechhhcccCCCC
Confidence 0001 1 445555544 4556789999999998765211 134899999998885 3 332 3444
Q ss_pred CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497 484 WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530 (642)
Q Consensus 484 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 530 (642)
..+.++.|+|||+.|+++..... .....|.+||.+++++.....
T Consensus 479 ~~~~~~~~~~~g~~~~~s~~~~~---~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 479 KRVVQPEYNKRGDEVWFSVWNGK---NDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp CEEEEEEECSSSSEEEEEEECCT---TSCCEEEEEETTTTEEEEEEC
T ss_pred CceEeccCCCCCCEEEEEeecCC---CCCCeEEEEECCCceEEEeec
Confidence 56778999999999998854221 023569999999988766554
No 89
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.75 E-value=8e-16 Score=158.47 Aligned_cols=283 Identities=14% Similarity=0.095 Sum_probs=188.8
Q ss_pred eeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEee--------cCCCCcccCCeecCCCCEEEEEEeecCCCC
Q 039497 236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT--------LNPNFHHYNPFVSANSEFIGYHRFRGESTE 307 (642)
Q Consensus 236 ~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~--------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 307 (642)
..+..+...+..++|+|||++|+....++ .+.+||+. ..+...+...+|+|||+.|+....++.
T Consensus 60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~-----~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~--- 131 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDG-----RLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSA--- 131 (380)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTS-----EEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSC---
T ss_pred ecccccccEEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCc---
Confidence 44566666788899999999999866554 89999982 234556778899999999887654443
Q ss_pred CCcccceEeeccC----CCcee-EEe--eeCCCccEEcCCCC-EEEEEecCCCceeEEEEECCCCCeeEEee-------c
Q 039497 308 GQSTIPHLEPVAS----PVKEL-RML--RLNGSFPSFSPDGG-LIVFNHDFELNAGIKIAKSDGSKRWTLIK-------D 372 (642)
Q Consensus 308 ~~~~~~~~~~~~~----~~~~~-~~~--~~~~~~~~~spdg~-~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-------~ 372 (642)
..+|-..... ..... .+. ........|+|++. +|+..+ ....|.++|+.+++...... .
T Consensus 132 ---v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s---~D~~i~~wd~~~~~~~~~~~~~~~~~h~ 205 (380)
T 3iz6_a 132 ---CSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGS---GDQTCVLWDVTTGQRISIFGSEFPSGHT 205 (380)
T ss_dssp ---CEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEEC---TTSCEEEECTTTCCEEEEECCCSSSSCC
T ss_pred ---EEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEEC---CCCcEEEEEcCCCcEEEEeecccCCCCc
Confidence 2333221100 00000 011 11123457888754 454433 34678888998887655431 3
Q ss_pred CCceeeeeec-CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEE
Q 039497 373 RTAFYNSWSP-TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451 (642)
Q Consensus 373 ~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~ 451 (642)
..+..+.|+| +++.|+..+. ++.+++|++.. . .. ....+..+. ..+..+.|+|||++|+
T Consensus 206 ~~v~~~~~~~~~~~~l~sgs~-------D~~v~~wd~~~--~-----~~-----~~~~~~~h~-~~v~~v~~~p~~~~l~ 265 (380)
T 3iz6_a 206 ADVLSLSINSLNANMFISGSC-------DTTVRLWDLRI--T-----SR-----AVRTYHGHE-GDINSVKFFPDGQRFG 265 (380)
T ss_dssp SCEEEEEECSSSCCEEEEEET-------TSCEEEEETTT--T-----CC-----CCEEECCCS-SCCCEEEECTTSSEEE
T ss_pred cCeEEEEeecCCCCEEEEEEC-------CCeEEEEECCC--C-----Cc-----ceEEECCcC-CCeEEEEEecCCCeEE
Confidence 3466778876 7777777663 78999999864 1 11 455566565 7788899999999988
Q ss_pred EEeCCCCceeEEEEECCCCccccceeeCCCCC-------CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc
Q 039497 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP-------WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG 524 (642)
Q Consensus 452 ~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~-------~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~ 524 (642)
..+. +..|.+||+.+++. +..+.... ..+..++|+|+|++|+..+.++. |++||+..++
T Consensus 266 s~s~---D~~i~lwd~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~--------i~vwd~~~~~ 331 (380)
T 3iz6_a 266 TGSD---DGTCRLFDMRTGHQ---LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD--------CYVWDTLLAE 331 (380)
T ss_dssp EECS---SSCEEEEETTTTEE---EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC--------EEEEETTTCC
T ss_pred EEcC---CCeEEEEECCCCcE---EEEecccccccccccCceEEEEECCCCCEEEEEECCCC--------EEEEECCCCc
Confidence 7763 34799999998875 34333221 12567899999999888777654 9999997766
Q ss_pred eEEeee---cCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497 525 LRRIHV---AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590 (642)
Q Consensus 525 ~~~l~~---~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 590 (642)
...... .++.+ .+..++|||||+.|+..+.++ .|.+|++.+.
T Consensus 332 ~~~~~~~~~~~h~~-------~v~~l~~s~dg~~l~sgs~D~-----------------~i~iW~~~~~ 376 (380)
T 3iz6_a 332 MVLNLGTLQNSHEG-------RISCLGLSSDGSALCTGSWDK-----------------NLKIWAFSGH 376 (380)
T ss_dssp EEEEECCSCSSCCC-------CCCEEEECSSSSEEEEECTTS-----------------CEEEEECCSS
T ss_pred eEEEEecccCCCCC-------ceEEEEECCCCCEEEEeeCCC-----------------CEEEEecCCC
Confidence 543221 23444 678899999999988877665 6777787764
No 90
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.75 E-value=1.1e-15 Score=152.68 Aligned_cols=267 Identities=14% Similarity=0.109 Sum_probs=179.5
Q ss_pred eeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEee--------cCCCCcccCCeecCCCCEEEEEEeecCCCCC
Q 039497 237 RVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT--------LNPNFHHYNPFVSANSEFIGYHRFRGESTEG 308 (642)
Q Consensus 237 ~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~--------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~ 308 (642)
.+..+...+..++|+|||++|+....++ .+.+|++. ..+...+....|+|||+.|+....++.
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~---- 88 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADK-----LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT---- 88 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSE----
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCC-----eEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCE----
Confidence 4455656788899999999998865544 78899872 244556677899999999988765443
Q ss_pred CcccceEeeccCCCceeEEeeeC--CCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCC
Q 039497 309 QSTIPHLEPVASPVKELRMLRLN--GSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTE 384 (642)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg 384 (642)
..+| .+........+.... .....|+|+++.|+.... ...|.++|+..++...... ...+..+.|+|++
T Consensus 89 --i~vw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (312)
T 4ery_A 89 --LKIW--DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF---DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 161 (312)
T ss_dssp --EEEE--ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEET---TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred --EEEE--ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCC
Confidence 2233 222221111111111 135689999998887654 3578889998876544433 4568889999999
Q ss_pred CEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEE
Q 039497 385 KHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFV 464 (642)
Q Consensus 385 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~ 464 (642)
+.|+..+. ++.+++|++.. +. ....+.......+..+.|+|+|++|+..+.. ..|.+
T Consensus 162 ~~l~~~~~-------d~~i~~wd~~~--------~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~i 218 (312)
T 4ery_A 162 SLIVSSSY-------DGLCRIWDTAS--------GQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLD---NTLKL 218 (312)
T ss_dssp SEEEEEET-------TSCEEEEETTT--------CC-----EEEEECCSSCCCEEEEEECTTSSEEEEEETT---TEEEE
T ss_pred CEEEEEeC-------CCcEEEEECCC--------Cc-----eeeEEeccCCCceEEEEECCCCCEEEEEcCC---CeEEE
Confidence 98888774 67899998754 22 3334433332456678999999999887743 38999
Q ss_pred EECCCCccccceeeCCCCCCcc--cceeEe-cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCccc
Q 039497 465 LDAVNGEFNGDIRQLTDGPWID--TMPSWS-PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDR 541 (642)
Q Consensus 465 ~d~~~g~~~~~~~~l~~~~~~~--~~~~~s-pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~ 541 (642)
||+.+++. +..+..+.... ....++ +++++|+..+.++. |++||+.+++...... ++..
T Consensus 219 wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~--------i~vwd~~~~~~~~~~~-~h~~------ 280 (312)
T 4ery_A 219 WDYSKGKC---LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL--------VYIWNLQTKEIVQKLQ-GHTD------ 280 (312)
T ss_dssp EETTTTEE---EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSC--------EEEEETTTCCEEEEEC-CCSS------
T ss_pred EECCCCcE---EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCE--------EEEEECCCchhhhhhh-ccCC------
Confidence 99998875 45554433222 223454 56777776665554 9999998877654433 3344
Q ss_pred ccccceEEcCCCCEEEEEEe
Q 039497 542 ERINHVCFSADGEWLLFTAN 561 (642)
Q Consensus 542 ~~~~~~~~S~Dg~~l~~~~~ 561 (642)
.+..++|+|++..|+..+.
T Consensus 281 -~v~~~~~~p~~~~l~s~~~ 299 (312)
T 4ery_A 281 -VVISTACHPTENIIASAAL 299 (312)
T ss_dssp -CEEEEEECSSSSEEEEEEC
T ss_pred -cEEEEeecCcCCceEEEEc
Confidence 5778999999998887763
No 91
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.75 E-value=4.3e-16 Score=156.34 Aligned_cols=275 Identities=14% Similarity=0.068 Sum_probs=177.6
Q ss_pred eeeCCCCCccccceeecCC-cEEEEEEeccCCceeeEEEEEee-------------cCCCCcccCCeecCCCCEEEEEEe
Q 039497 236 TRVTPPGVHCFTPAAFHDG-KRLAVATRRKNRNFRHIEIYDLT-------------LNPNFHHYNPFVSANSEFIGYHRF 301 (642)
Q Consensus 236 ~~l~~~~~~~~~~~~SpdG-~~l~~~~~~~~~~~~~i~~~d~~-------------~~~~~~~~~~~~spDg~~l~~~~~ 301 (642)
..+..+...+..++|+|++ +.|+....++ .+.+|++. .++...+....|+|||+.|+....
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~-----~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 85 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDK-----TLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTS-----EEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCc-----cEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence 3456676678888999976 6677655444 88899873 234555667789999999988765
Q ss_pred ecCCCCCCcccceEeeccCCCceeEEeee--CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceee
Q 039497 302 RGESTEGQSTIPHLEPVASPVKELRMLRL--NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYN 378 (642)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~ 378 (642)
++. ..+| .+........+... ......|+|+++.|+..+. ...|.++++.+.....+.. ...+..+
T Consensus 86 D~~------v~~w--d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~---D~~i~vwd~~~~~~~~~~~h~~~v~~~ 154 (319)
T 3frx_A 86 DKT------LRLW--DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR---DKTIKVWTIKGQCLATLLGHNDWVSQV 154 (319)
T ss_dssp TSE------EEEE--ETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEET---TSCEEEEETTSCEEEEECCCSSCEEEE
T ss_pred CCE------EEEE--ECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeEEEEeccCCcEEEE
Confidence 544 3333 22222111111111 1245689999998887654 3567778887655444433 5567788
Q ss_pred eeecCC------CEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEE
Q 039497 379 SWSPTE------KHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF 452 (642)
Q Consensus 379 ~~spdg------~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~ 452 (642)
.|+|++ ..|+..+ .++.+++|++.. .. ....+..+. ..+..++|+|||++|+.
T Consensus 155 ~~~~~~~~~~~~~~l~s~~-------~d~~i~~wd~~~--------~~-----~~~~~~~h~-~~v~~~~~sp~g~~l~s 213 (319)
T 3frx_A 155 RVVPNEKADDDSVTIISAG-------NDKMVKAWNLNQ--------FQ-----IEADFIGHN-SNINTLTASPDGTLIAS 213 (319)
T ss_dssp EECCC------CCEEEEEE-------TTSCEEEEETTT--------TE-----EEEEECCCC-SCEEEEEECTTSSEEEE
T ss_pred EEccCCCCCCCccEEEEEe-------CCCEEEEEECCc--------ch-----hheeecCCC-CcEEEEEEcCCCCEEEE
Confidence 898854 3566555 378899999854 11 334445554 67888999999999987
Q ss_pred EeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC
Q 039497 453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532 (642)
Q Consensus 453 ~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~ 532 (642)
.+. +..|.+||+.+++. +..+.. ...+..++|+|||.+|+.....+ +.+|+++...........
T Consensus 214 ~~~---dg~i~iwd~~~~~~---~~~~~~-~~~v~~~~~sp~~~~la~~~~~~---------i~v~~~~~~~~~~~~~~~ 277 (319)
T 3frx_A 214 AGK---DGEIMLWNLAAKKA---MYTLSA-QDEVFSLAFSPNRYWLAAATATG---------IKVFSLDPQYLVDDLRPE 277 (319)
T ss_dssp EET---TCEEEEEETTTTEE---EEEEEC-CSCEEEEEECSSSSEEEEEETTE---------EEEEEETTEEEEEEECCC
T ss_pred EeC---CCeEEEEECCCCcE---EEEecC-CCcEEEEEEcCCCCEEEEEcCCC---------cEEEEeCcCeeeeccCcc
Confidence 774 34899999998875 455543 34677889999999988776543 788888765433222111
Q ss_pred CCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 533 PEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 533 ~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
...........+..++|||||++|+..+.++
T Consensus 278 ~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg 308 (319)
T 3frx_A 278 FAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308 (319)
T ss_dssp CTTCCGGGCCCEEEEEECTTSSEEEEEETTS
T ss_pred ccccccCcCcceeEEEECCCCCEEEEeecCc
Confidence 1110000011456789999999998887765
No 92
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.74 E-value=6.2e-16 Score=173.72 Aligned_cols=300 Identities=12% Similarity=0.093 Sum_probs=195.1
Q ss_pred ceEeeCC-eEEEEEecCCC-ceEEEEEecC---CCcccccCCccceeeCCCC-------CccccceeecCCcEEEEEEec
Q 039497 196 PTWSGDS-TIYFHRQADDG-WWSIFRVSFP---ENLEFLGFPIAPTRVTPPG-------VHCFTPAAFHDGKRLAVATRR 263 (642)
Q Consensus 196 ~~wspdg-~~~~~~~~~~g-~~~l~~~~~~---~~~~~~~~~~~~~~l~~~~-------~~~~~~~~SpdG~~l~~~~~~ 263 (642)
+..+||| +++|+...... ...||+.+.. ++ ..+.+.... ..+..++|||||++|+|...+
T Consensus 112 ~~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~ 183 (741)
T 1yr2_A 112 GLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGT--------KGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQD 183 (741)
T ss_dssp CCCEEETTEEEEEEECSSCSSCEEEEEETTSCTTC--------CCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEE
T ss_pred CCCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCC--------CCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcC
Confidence 4556999 56666643222 4689999876 55 445543221 245678999999999999888
Q ss_pred cCCceeeEEEEEeecCCC-------CcccCCeecCCCCEEEEEEeecCCC------CCCcccceEeeccCCCce-eEEee
Q 039497 264 KNRNFRHIEIYDLTLNPN-------FHHYNPFVSANSEFIGYHRFRGEST------EGQSTIPHLEPVASPVKE-LRMLR 329 (642)
Q Consensus 264 ~~~~~~~i~~~d~~~~~~-------~~~~~~~~spDg~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~ 329 (642)
.+.....|+++|+..+.. .....++|||| +.|+|.+.+.... .+....+++..+...... ..+..
T Consensus 184 ~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~ 262 (741)
T 1yr2_A 184 GGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA 262 (741)
T ss_dssp TTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC
T ss_pred CCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec
Confidence 777778899999944321 11257899999 9999997654310 011234556665443321 11222
Q ss_pred eCC-----CccEEcCCCCEEEEEecCC--CceeEEEEECCCC--C-eeEEeec-CCceeeeeecCCCEEEEEEcCCCccc
Q 039497 330 LNG-----SFPSFSPDGGLIVFNHDFE--LNAGIKIAKSDGS--K-RWTLIKD-RTAFYNSWSPTEKHVIYTSTGPIFQS 398 (642)
Q Consensus 330 ~~~-----~~~~~spdg~~l~~~~~~~--~~~~l~~~d~~~~--~-~~~l~~~-~~~~~~~~spdg~~l~~~~~~~~~~~ 398 (642)
... ..+.|||||++|++..... ....||++|++++ + .+.+... .....+ ++|||+.|++.++.
T Consensus 263 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~----- 336 (741)
T 1yr2_A 263 TPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGD----- 336 (741)
T ss_dssp CTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECT-----
T ss_pred cCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECC-----
Confidence 211 3568999999999977543 4679999999887 5 6666652 233334 56999999999863
Q ss_pred CCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee
Q 039497 399 ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ 478 (642)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~ 478 (642)
+....+|+.++. + ++.. ..+.+..+....+..+.|+ +++|++...+++..+||+++++++. .+.
T Consensus 337 ~~~~~~l~~~d~--~-----~~~~---~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~----~~~ 400 (741)
T 1yr2_A 337 GAPLKKIVRVDL--S-----GSTP---RFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKP----AGA 400 (741)
T ss_dssp TCTTCEEEEEEC--S-----SSSC---EEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCE----EEE
T ss_pred CCCCCEEEEEeC--C-----CCcc---ccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCc----eee
Confidence 223455666665 2 1100 3455544432333344555 6688888877888899999986444 466
Q ss_pred CCC-CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497 479 LTD-GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530 (642)
Q Consensus 479 l~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 530 (642)
+.. ....+..+.++|||+.|+|...... ....||++|+.+++.+.+..
T Consensus 401 l~~~~~~~v~~~~~s~d~~~l~~~~ss~~----~P~~i~~~d~~tg~~~~l~~ 449 (741)
T 1yr2_A 401 VSLPGIGSASGLSGRPGDRHAYLSFSSFT----QPATVLALDPATAKTTPWEP 449 (741)
T ss_dssp CBCSSSCEEEEEECCBTCSCEEEEEEETT----EEEEEEEEETTTTEEEECSC
T ss_pred ccCCCCeEEEEeecCCCCCEEEEEEcCCC----CCCEEEEEECCCCcEEEEec
Confidence 653 2455677889999998888766543 56789999999888665543
No 93
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.74 E-value=1.7e-15 Score=156.82 Aligned_cols=225 Identities=16% Similarity=0.141 Sum_probs=158.0
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
.+.|+|||++|+..+. ...|.++|+.+++...... ...+..+.|+|+++.|+..+. ++.+++|++..
T Consensus 128 ~v~~s~dg~~l~s~~~---d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-------d~~v~iwd~~~- 196 (393)
T 1erj_A 128 SVCFSPDGKFLATGAE---DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG-------DRTVRIWDLRT- 196 (393)
T ss_dssp EEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-------TSEEEEEETTT-
T ss_pred EEEECCCCCEEEEEcC---CCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecC-------CCcEEEEECCC-
Confidence 5689999999888654 3678888998877554443 556889999999999988764 78999998754
Q ss_pred cCCCCCCCCCccccceEEccccCCCCccCcEECC-CCCeEEEEeCCCCceeEEEEECCCCccccceeeC-------CCCC
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSP-DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL-------TDGP 483 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l-------~~~~ 483 (642)
+. ....+. .. ..+..+.|+| ||++|+..+.+ ..|.+||+.+++. +..+ ..+.
T Consensus 197 -------~~-----~~~~~~-~~-~~v~~~~~~~~~~~~l~~~s~d---~~v~iwd~~~~~~---~~~~~~~~~~~~~h~ 256 (393)
T 1erj_A 197 -------GQ-----CSLTLS-IE-DGVTTVAVSPGDGKYIAAGSLD---RAVRVWDSETGFL---VERLDSENESGTGHK 256 (393)
T ss_dssp -------TE-----EEEEEE-CS-SCEEEEEECSTTCCEEEEEETT---SCEEEEETTTCCE---EEEEC------CCCS
T ss_pred -------Ce-----eEEEEE-cC-CCcEEEEEECCCCCEEEEEcCC---CcEEEEECCCCcE---EEeecccccCCCCCC
Confidence 11 223333 22 4567789999 89888877643 3789999998875 4444 2344
Q ss_pred CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE-----------EeeecCCCCCCCcccccccceEEcCC
Q 039497 484 WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR-----------RIHVAGPEGSGDVDRERINHVCFSAD 552 (642)
Q Consensus 484 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-----------~l~~~~~~~~~~~~~~~~~~~~~S~D 552 (642)
..+..++|+|||++|+..+.++. |.+||+...... ..+..++.. .+..+.|+++
T Consensus 257 ~~v~~v~~~~~g~~l~s~s~d~~--------v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-------~v~~~~~~~~ 321 (393)
T 1erj_A 257 DSVYSVVFTRDGQSVVSGSLDRS--------VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD-------FVLSVATTQN 321 (393)
T ss_dssp SCEEEEEECTTSSEEEEEETTSE--------EEEEEC---------------CEEEEEECCSS-------CEEEEEECGG
T ss_pred CCEEEEEECCCCCEEEEEeCCCE--------EEEEECCCCCCcccccCCCCCcceEEEecccC-------cEEEEEECCC
Confidence 56778899999999988877654 899998754221 111123333 5678999999
Q ss_pred CCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEec------CCceEEeecCCC
Q 039497 553 GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHP------GNQLDLGKLRLE 621 (642)
Q Consensus 553 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~------dg~~~~~~~~~~ 621 (642)
+++|+..+.++ .|.+||+..+. +..+..+...+..++|++ ++++|++....+
T Consensus 322 ~~~l~sgs~D~-----------------~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg 380 (393)
T 1erj_A 322 DEYILSGSKDR-----------------GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC 380 (393)
T ss_dssp GCEEEEEETTS-----------------EEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTS
T ss_pred CCEEEEEeCCC-----------------eEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCC
Confidence 99988777654 78889988766 445566666667777765 678888765544
No 94
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.73 E-value=2.1e-15 Score=152.92 Aligned_cols=287 Identities=9% Similarity=0.027 Sum_probs=178.3
Q ss_pred ecccCCCccCCcee-----CC-CCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCc-------eeEeecCCC---cce
Q 039497 134 RLTPYGVVDYSPSV-----SY-SGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNK-------RVIVCERGG---WPT 197 (642)
Q Consensus 134 ~lt~~~~~~~~~~~-----SP-DG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~l~~~~~~---~~~ 197 (642)
.|..+.......+| +| ||++||..+.+. .|.+|++..++. ......+.. .++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~------------~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~ 83 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDK------------TVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLA 83 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTS------------CEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCC------------EEEEEECCcCCcccccccccchhccCCCceEEEE
Confidence 34445555555666 66 999999988766 688999876531 111122222 358
Q ss_pred EeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEee
Q 039497 198 WSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT 277 (642)
Q Consensus 198 wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~ 277 (642)
|+|++.++++. ..++. |..+++.++. ....+..+...+..++|+|||++|+....++ .+.+||+.
T Consensus 84 ~~~~~~~l~s~-s~D~~--v~lwd~~~~~-------~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~-----~i~~wd~~ 148 (343)
T 2xzm_R 84 LSQENCFAISS-SWDKT--LRLWDLRTGT-------TYKRFVGHQSEVYSVAFSPDNRQILSAGAER-----EIKLWNIL 148 (343)
T ss_dssp ECSSTTEEEEE-ETTSE--EEEEETTSSC-------EEEEEECCCSCEEEEEECSSTTEEEEEETTS-----CEEEEESS
T ss_pred ECCCCCEEEEE-cCCCc--EEEEECCCCc-------EEEEEcCCCCcEEEEEECCCCCEEEEEcCCC-----EEEEEecc
Confidence 99999888877 56774 4455666653 4456667766788899999999998865544 89999973
Q ss_pred cCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCC----------CCEEEEE
Q 039497 278 LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPD----------GGLIVFN 347 (642)
Q Consensus 278 ~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd----------g~~l~~~ 347 (642)
.. ..... . .. ......+ ....|+|+ +..++..
T Consensus 149 ~~---------------~~~~~-~-~~--------------~~~~~~v-------~~~~~~~~~~~~~~~~~~~~~l~s~ 190 (343)
T 2xzm_R 149 GE---------------CKFSS-A-EK--------------ENHSDWV-------SCVRYSPIMKSANKVQPFAPYFASV 190 (343)
T ss_dssp SC---------------EEEEC-C-TT--------------TSCSSCE-------EEEEECCCCCSCSCCCSSCCEEEEE
T ss_pred CC---------------ceeee-e-cc--------------cCCCcee-------eeeeeccccccccccCCCCCEEEEE
Confidence 10 00000 0 00 0000000 12234444 4666665
Q ss_pred ecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccc
Q 039497 348 HDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD 426 (642)
Q Consensus 348 ~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 426 (642)
+. ...|.++|........+.. ...+..+.|+|||++|+..+. ++.+++|++.. .+. .
T Consensus 191 ~~---d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~-------dg~v~iwd~~~--------~~~----~ 248 (343)
T 2xzm_R 191 GW---DGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGK-------DKKLLIWDILN--------LTY----P 248 (343)
T ss_dssp ET---TSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEET-------TCEEEEEESSC--------CSS----C
T ss_pred cC---CCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcC-------CCeEEEEECCC--------Ccc----c
Confidence 53 3567778854433222222 566889999999999988874 78999999843 111 2
Q ss_pred eEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-----------CCCCcccceeEecCC
Q 039497 427 VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-----------DGPWIDTMPSWSPKG 495 (642)
Q Consensus 427 ~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-----------~~~~~~~~~~~spdG 495 (642)
...+.. . ..+..++|+||+++|+.... ..|.+|++.+++. .....+. .+...+..++|+|+|
T Consensus 249 ~~~~~~-~-~~v~~v~~sp~~~~la~~~d----~~v~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 321 (343)
T 2xzm_R 249 QREFDA-G-STINQIAFNPKLQWVAVGTD----QGVKIFNLMTQSK-APVCTIEAEPITKAEGQKGKNPQCTSLAWNALG 321 (343)
T ss_dssp SEEEEC-S-SCEEEEEECSSSCEEEEEES----SCEEEEESSSCCS-CSEEECCCCSGGGBTTBCCSCCCEEEEEECSSS
T ss_pred ceeecC-C-CcEEEEEECCCCCEEEEECC----CCEEEEEeCCCCC-CceEEeecCcchhhhhhcCCCCceEEEEECCCC
Confidence 233322 2 35778999999988775543 2588999887663 0011232 223345678999999
Q ss_pred CEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497 496 DLIAFSSNRHNPDNVEAFSLYVIKPDG 522 (642)
Q Consensus 496 ~~l~~~~~~~~~~~~~~~~l~~~d~~~ 522 (642)
++|+..+.++. |.+|++++
T Consensus 322 ~~l~sg~~Dg~--------v~~w~~~~ 340 (343)
T 2xzm_R 322 KKLFAGFTDGV--------IRTFSFET 340 (343)
T ss_dssp CCEEEEETTSE--------EEEEEEEE
T ss_pred CeEEEecCCce--------EEEEEEEc
Confidence 99988887654 88888754
No 95
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1e-16 Score=167.11 Aligned_cols=310 Identities=11% Similarity=-0.003 Sum_probs=179.6
Q ss_pred CccccceeecCCcEEEEEEeccCCceeeEEEEEee-----cCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEee
Q 039497 243 VHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT-----LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEP 317 (642)
Q Consensus 243 ~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~-----~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~ 317 (642)
..+..++|||||++||.+.. ...+. |.. .++...+...+++||| ..+. ...|...
T Consensus 16 ~~v~sv~~SpDG~~iASas~-----D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg-------~~~~------~~~~~~~ 75 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFP-----DISIG--QPKYAKDINCNSKNLFHVKEFPLE-------FENK------LDFELAQ 75 (588)
T ss_dssp SSSCCEEECTTSCEEEECSS-----SEEEE--EECCCSCCSSBGGGTEEEEEECCC-------CCCT------TTTSCCC
T ss_pred ccEEEEEECCCCCEEEEEcC-----Cceee--cccccceecCCCccEEEEEECCCC-------Ccce------EEEEeCC
Confidence 35778999999999998543 33554 542 2334455677889998 1122 1111110
Q ss_pred ccCCCceeEEe-eeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeec-----CCceeeeeecCCCEEEEEE
Q 039497 318 VASPVKELRML-RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD-----RTAFYNSWSPTEKHVIYTS 391 (642)
Q Consensus 318 ~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~-----~~~~~~~~spdg~~l~~~~ 391 (642)
+. ..+... .......+|||||++|+..+. ...+.+++.++ ....+... ..+.+++|||||+.|+.++
T Consensus 76 --~~-~~~~~~~~~~V~~vawSPdG~~LAs~s~---dg~V~iwd~~~-~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs 148 (588)
T 2j04_A 76 --QN-GLLNSQPVCYPRVCKPSPIDDWMAVLSN---NGNVSVFKDNK-MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGN 148 (588)
T ss_dssp --SS-CSSTTSCSCCEEEEEECSSSSCEEEEET---TSCEEEEETTE-EEEECCCSSCSTTTCEEEEEECSSSSCEEEEE
T ss_pred --Cc-eEeecCCCCcEEEEEECCCCCEEEEEeC---CCcEEEEeCCc-eeeeccCCCccccccEEEEEEcCCCCEEEEEc
Confidence 00 000000 111235689999999998765 35566777544 11222211 1378899999999999987
Q ss_pred cCCCcccCCCeEEEEEEEeecCCCCCCCCCccc--cceEEc----cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEE
Q 039497 392 TGPIFQSERATVQIARVSFQLDPSDDNNREEIP--CDVKIL----TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVL 465 (642)
Q Consensus 392 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~l----~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~ 465 (642)
. ++.++||++.. +....+ .....+ ..+. ..+..++||||| ++..+. +..+++|
T Consensus 149 ~-------DGtVkIWd~~~--------~~l~~~~~i~l~ti~~~~~gh~-~~V~sVawSPdg--Laass~---D~tVrlW 207 (588)
T 2j04_A 149 E-------DGELQFFSIRK--------NSENTPEFYFESSIRLSDAGSK-DWVTHIVWYEDV--LVAALS---NNSVFSM 207 (588)
T ss_dssp T-------TSEEEEEECCC--------CTTTCCCCEEEEEEECSCTTCC-CCEEEEEEETTE--EEEEET---TCCEEEE
T ss_pred C-------CCEEEEEECCC--------Cccccccceeeeeeeccccccc-ccEEEEEEcCCc--EEEEeC---CCeEEEE
Confidence 4 78999999865 110000 012333 2233 578889999999 555553 3479999
Q ss_pred ECCCCccccceeeCC-CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccc
Q 039497 466 DAVNGEFNGDIRQLT-DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERI 544 (642)
Q Consensus 466 d~~~g~~~~~~~~l~-~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 544 (642)
++++++.......+. .+...+..++|+ |+.|+.++. + .|.+||+.+++...+.. ++.. .+
T Consensus 208 d~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~~-~--------tIkLWd~~~~~~~~~~~-gh~~-------~V 268 (588)
T 2j04_A 208 TVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTCP-G--------YVHKIDLKNYSISSLKT-GSLE-------NF 268 (588)
T ss_dssp CCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEECS-S--------EEEEEETTTTEEEEEEC-SCCS-------CC
T ss_pred ECCCCccccceeeecccccCcEEEEEEE--CCEEEEEeC-C--------eEEEEECCCCeEEEEEc-CCCc-------eE
Confidence 998766300012352 344578889999 688887764 3 39999999887755543 4555 67
Q ss_pred cceEE--cCCCCEEEEEEecCC-cccC-CCCCCCCCC----CCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEe
Q 039497 545 NHVCF--SADGEWLLFTANLGA-VMAE-PVSWPNQFQ----PYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLG 616 (642)
Q Consensus 545 ~~~~~--S~Dg~~l~~~~~~~~-~~~~-~~~~~~~~~----~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~ 616 (642)
..++| |||++.|+.+..++. .... .+.+.++.. ....+++|+..++....+.. ...+..++|||||+.+++
T Consensus 269 ~~va~~~s~d~~~La~a~edG~klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~ 347 (588)
T 2j04_A 269 HIIPLNHEKESTILLMSNKTSYKVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYSIAI 347 (588)
T ss_dssp CEEEETTCSSCEEEEECSSCEEEEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSEEEE
T ss_pred EEEEeeeCCCCCEEEEEcCCCCEEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCCCEEEE
Confidence 88999 999987776654432 0000 000000000 01123333333333332222 233567999999998876
Q ss_pred ecCC
Q 039497 617 KLRL 620 (642)
Q Consensus 617 ~~~~ 620 (642)
....
T Consensus 348 ~~~i 351 (588)
T 2j04_A 348 VYDM 351 (588)
T ss_dssp EEEE
T ss_pred EEec
Confidence 5444
No 96
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.72 E-value=6.5e-15 Score=163.81 Aligned_cols=305 Identities=10% Similarity=0.061 Sum_probs=194.2
Q ss_pred eEeeCC-eEEEEEecCCCc-eEEEEEecCCCcccccCCccceeeCC-CCCccccceeecCCcEEEEEEeccCCceeeEEE
Q 039497 197 TWSGDS-TIYFHRQADDGW-WSIFRVSFPENLEFLGFPIAPTRVTP-PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI 273 (642)
Q Consensus 197 ~wspdg-~~~~~~~~~~g~-~~l~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~ 273 (642)
..+++| .+|+........ ..+|+....++...++|+-. +.. +...+..++|||||++|+|.....+.....|++
T Consensus 83 ~p~~~g~~~y~~~~~~~~~~~~~~r~~~~~~~~vllD~n~---la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v 159 (693)
T 3iuj_A 83 APFREGRYHYFFKNDGLQNQNVLWRQQEGKPAEVFLDPNT---LSPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHL 159 (693)
T ss_dssp CCEEETTEEEEEEECSSCSSCEEEEECTTSCCEEEECGGG---GSTTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred CCEEECCEEEEEEEcCCCceeEEEEeCCCCCcEEEEehhh---ccCCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEE
Confidence 334555 566666444333 36677544333111111100 111 112455678999999999998888888889999
Q ss_pred EEeecCCC-------CcccCCeecCCCCEEEEEEeecCCC-----CCCcccceEeeccCCCce-eEEeeeCC------Cc
Q 039497 274 YDLTLNPN-------FHHYNPFVSANSEFIGYHRFRGEST-----EGQSTIPHLEPVASPVKE-LRMLRLNG------SF 334 (642)
Q Consensus 274 ~d~~~~~~-------~~~~~~~~spDg~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~ 334 (642)
+|+.++.. .....++|| ||+.|+|.+.+.... .+....+++..+.....+ ..+..... ..
T Consensus 160 ~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~ 238 (693)
T 3iuj_A 160 MDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVG 238 (693)
T ss_dssp EETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEE
T ss_pred EECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEE
Confidence 99944321 113578999 999999998764200 012234566666544321 12222211 24
Q ss_pred cEEcCCCCEEEEEecCCC-ceeEEEEECCCC--CeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 335 PSFSPDGGLIVFNHDFEL-NAGIKIAKSDGS--KRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 335 ~~~spdg~~l~~~~~~~~-~~~l~~~d~~~~--~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
+.|||||++|++...... ..+||+++++++ +.+.+..........|+++|++|+|.++. +.....|+.++.
T Consensus 239 ~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~-----~~~~~~l~~~d~- 312 (693)
T 3iuj_A 239 ATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNR-----DAPNRRLVTVDA- 312 (693)
T ss_dssp EEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECT-----TCTTCEEEEEET-
T ss_pred EEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECC-----CCCCCEEEEEeC-
Confidence 679999999998765433 359999999876 45666553322222388999999998863 233566777766
Q ss_pred cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCccccee
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPS 490 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~ 490 (642)
+ ++. ....+.+..+. .... .|+++|++|++...+++..+|++++++++. .+.+.. ....+..+.
T Consensus 313 -~-----~~~--~~~~~~l~~~~-~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~----~~~l~~p~~~~~~~~~ 377 (693)
T 3iuj_A 313 -A-----NPG--PAHWRDLIPER-QQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR----VREVALPGLGSVSGFN 377 (693)
T ss_dssp -T-----SCC--GGGCEEEECCC-SSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE----EEEECCSSSSEEEECC
T ss_pred -C-----CCC--ccccEEEecCC-CCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe----eEEeecCCCceEEeee
Confidence 3 221 00235565554 3332 999999999999988888899999998665 355543 334556678
Q ss_pred EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530 (642)
Q Consensus 491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 530 (642)
++||++.|+|...... .+..||++|+++++.+.+..
T Consensus 378 ~~~d~~~l~~~~ss~~----tP~~l~~~d~~~g~~~~l~~ 413 (693)
T 3iuj_A 378 GKHDDPALYFGFENYA----QPPTLYRFEPKSGAISLYRA 413 (693)
T ss_dssp CCTTCSCEEEEEECSS----SCCEEEEECTTTCCEEEEEC
T ss_pred cCCCCCEEEEEecCCC----CCCEEEEEECCCCeEEEEEe
Confidence 8999999988876533 45679999999988877764
No 97
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.72 E-value=6.5e-15 Score=147.67 Aligned_cols=275 Identities=12% Similarity=0.031 Sum_probs=183.0
Q ss_pred EeecCCCCcccCCeecCCC-CEEEEEEeecCCCCCCcccceEeeccCCCc--eeEEeee---CCCccEEcCCCCEEEEEe
Q 039497 275 DLTLNPNFHHYNPFVSANS-EFIGYHRFRGESTEGQSTIPHLEPVASPVK--ELRMLRL---NGSFPSFSPDGGLIVFNH 348 (642)
Q Consensus 275 d~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~spdg~~l~~~~ 348 (642)
....++...+...+|+|++ +.|+....++. ..+|-........ .+..... ......|+|||++|+..+
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~------v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 84 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKT------LISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS 84 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSE------EEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCcc------EEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence 3345666677778899976 56666544433 4445332211111 1111111 113468999999888766
Q ss_pred cCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccc
Q 039497 349 DFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD 426 (642)
Q Consensus 349 ~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 426 (642)
. ...|.++|+.+++...... ...+..+.|+|+++.|+..+. ++.+++|++.. . .
T Consensus 85 ~---D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-------D~~i~vwd~~~---------~-----~ 140 (319)
T 3frx_A 85 W---DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR-------DKTIKVWTIKG---------Q-----C 140 (319)
T ss_dssp T---TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEET-------TSCEEEEETTS---------C-----E
T ss_pred C---CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeC-------CCeEEEEECCC---------C-----e
Confidence 4 3678889998887554433 567889999999999988774 78899998743 2 4
Q ss_pred eEEccccCCCCccCcEECCCC------CeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEE
Q 039497 427 VKILTKEETGNNAFPSCSPDG------KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500 (642)
Q Consensus 427 ~~~l~~~~~~~~~~~~~SpDg------~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~ 500 (642)
...+..+. ..+..+.|+|++ ..|+..+. +..|.+||+.+++. ...+..+...+..++|+|||++|+.
T Consensus 141 ~~~~~~h~-~~v~~~~~~~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~---~~~~~~h~~~v~~~~~sp~g~~l~s 213 (319)
T 3frx_A 141 LATLLGHN-DWVSQVRVVPNEKADDDSVTIISAGN---DKMVKAWNLNQFQI---EADFIGHNSNINTLTASPDGTLIAS 213 (319)
T ss_dssp EEEECCCS-SCEEEEEECCC------CCEEEEEET---TSCEEEEETTTTEE---EEEECCCCSCEEEEEECTTSSEEEE
T ss_pred EEEEeccC-CcEEEEEEccCCCCCCCccEEEEEeC---CCEEEEEECCcchh---heeecCCCCcEEEEEEcCCCCEEEE
Confidence 55555554 667778888854 35665553 34799999988775 5566667777888999999999998
Q ss_pred EecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCC
Q 039497 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYG 580 (642)
Q Consensus 501 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 580 (642)
.+.++. |.+||+.+++....... .. .+..++|+|||..|+.....
T Consensus 214 ~~~dg~--------i~iwd~~~~~~~~~~~~--~~-------~v~~~~~sp~~~~la~~~~~------------------ 258 (319)
T 3frx_A 214 AGKDGE--------IMLWNLAAKKAMYTLSA--QD-------EVFSLAFSPNRYWLAAATAT------------------ 258 (319)
T ss_dssp EETTCE--------EEEEETTTTEEEEEEEC--CS-------CEEEEEECSSSSEEEEEETT------------------
T ss_pred EeCCCe--------EEEEECCCCcEEEEecC--CC-------cEEEEEEcCCCCEEEEEcCC------------------
Confidence 887764 99999988765443322 22 56889999999988776543
Q ss_pred cEEEEEcCCCcee-eccC--------CCCCCCCcEEecCCceEEeecCCC
Q 039497 581 DLYVVKLDGSGLR-RLTW--------NGYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 581 ~l~~~~~~~~~~~-~lt~--------~~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
.+.+|+++.+... .+.. ....+..++|||||++|++....+
T Consensus 259 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg 308 (319)
T 3frx_A 259 GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308 (319)
T ss_dssp EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTS
T ss_pred CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCc
Confidence 4566666654322 2211 122345789999999998865544
No 98
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.72 E-value=2.1e-14 Score=145.05 Aligned_cols=299 Identities=13% Similarity=0.036 Sum_probs=172.8
Q ss_pred eeEEEEEec-CCCceeEee-cCC---CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCcccee---eCCCCCc
Q 039497 173 TDIVVFQES-DPNKRVIVC-ERG---GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTR---VTPPGVH 244 (642)
Q Consensus 173 ~~l~~~~~~-~g~~~~l~~-~~~---~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~---l~~~~~~ 244 (642)
..|++|++. +++.+.+.. ... ..++|+|||+.+++....++...+|.++..++ .... +...+ .
T Consensus 15 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~--------~~~~~~~~~~~~-~ 85 (343)
T 1ri6_A 15 QQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG--------ALTFAAESALPG-S 85 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC--------CEEEEEEEECSS-C
T ss_pred CeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCC--------ceeeccccccCC-C
Confidence 378899885 444333322 222 35699999986666644447667777765555 2222 22223 5
Q ss_pred cccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCce
Q 039497 245 CFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKE 324 (642)
Q Consensus 245 ~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (642)
...++|+|||++|+++.... ..+.+||+. +|+..... .....
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~----~~i~~~d~~--------------~~~~~~~~----------------~~~~~---- 127 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYNA----GNVSVTRLE--------------DGLPVGVV----------------DVVEG---- 127 (343)
T ss_dssp CSEEEECTTSSEEEEEETTT----TEEEEEEEE--------------TTEEEEEE----------------EEECC----
T ss_pred CcEEEEcCCCCEEEEEecCC----CeEEEEECC--------------CCcccccc----------------ccccC----
Confidence 66788999999888865432 267888762 11100000 00000
Q ss_pred eEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCC-CCeeEEe-----e--cCCceeeeeecCCCEEEEEEcCCCc
Q 039497 325 LRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG-SKRWTLI-----K--DRTAFYNSWSPTEKHVIYTSTGPIF 396 (642)
Q Consensus 325 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~-~~~~~l~-----~--~~~~~~~~~spdg~~l~~~~~~~~~ 396 (642)
......+.|+|||++|++... ....|+++++.. ++...+. . ...+..+.|+|||++|+++..
T Consensus 128 ----~~~~~~~~~s~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---- 197 (343)
T 1ri6_A 128 ----LDGCHSANISPDNRTLWVPAL--KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---- 197 (343)
T ss_dssp ----CTTBCCCEECTTSSEEEEEEG--GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET----
T ss_pred ----CCCceEEEECCCCCEEEEecC--CCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC----
Confidence 011235689999998877652 235788888876 5544322 1 335667899999999988873
Q ss_pred ccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC-----CCCccCcEECCCCCeEEEEeCCCCceeEEEEECC--C
Q 039497 397 QSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE-----TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV--N 469 (642)
Q Consensus 397 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~--~ 469 (642)
....+.+|+++. . .+.. . ....+.... ......++|+|||++|++....++ .|.+|++. +
T Consensus 198 --~~~~i~~~~~~~--~-----~g~~-~-~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~--~i~v~d~~~~~ 264 (343)
T 1ri6_A 198 --LNSSVDVWELKD--P-----HGNI-E-CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS--LITVFSVSEDG 264 (343)
T ss_dssp --TTTEEEEEESSC--T-----TSCC-E-EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT--EEEEEEECTTS
T ss_pred --CCCEEEEEEecC--C-----CCcE-E-EEeeccccCccccccCCccceEECCCCCEEEEEecCCC--EEEEEEEcCCC
Confidence 367888888754 1 1210 0 111221111 012335899999999987765433 67777776 4
Q ss_pred CccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEE
Q 039497 470 GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCF 549 (642)
Q Consensus 470 g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 549 (642)
++. ..+..+... .....++|+|||++|++..... +...||.+|.++++.+.+....... .+..++|
T Consensus 265 ~~~-~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~-----~~v~v~~~d~~~g~~~~~~~~~~g~-------~p~~i~~ 330 (343)
T 1ri6_A 265 SVL-SKEGFQPTE-TQPRGFNVDHSGKYLIAAGQKS-----HHISVYEIVGEQGLLHEKGRYAVGQ-------GPMWVVV 330 (343)
T ss_dssp CCE-EEEEEEECS-SSCCCEEECTTSSEEEEECTTT-----CEEEEEEEETTTTEEEEEEEEECSS-------SCCEEEE
T ss_pred Cce-EEeeeecCC-CccceEEECCCCCEEEEecCCC-----CeEEEEEEcCCCceeeEccccccCC-------CCeeEEE
Confidence 442 012223322 2367789999999988887543 3445565677787776665422211 3445666
Q ss_pred cCCCCE
Q 039497 550 SADGEW 555 (642)
Q Consensus 550 S~Dg~~ 555 (642)
.++.++
T Consensus 331 ~~~~~~ 336 (343)
T 1ri6_A 331 NAHEGG 336 (343)
T ss_dssp EEEC--
T ss_pred EcccCC
Confidence 665443
No 99
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.71 E-value=1.3e-15 Score=154.60 Aligned_cols=268 Identities=16% Similarity=0.144 Sum_probs=170.7
Q ss_pred eeeCCCCCcccccee-----ec-CCcEEEEEEeccCCceeeEEEEEeec---------------CCCCcccCCeecCCCC
Q 039497 236 TRVTPPGVHCFTPAA-----FH-DGKRLAVATRRKNRNFRHIEIYDLTL---------------NPNFHHYNPFVSANSE 294 (642)
Q Consensus 236 ~~l~~~~~~~~~~~~-----Sp-dG~~l~~~~~~~~~~~~~i~~~d~~~---------------~~~~~~~~~~~spDg~ 294 (642)
..+..+...+..++| ++ ||++|+....++ .+.+||+.. .+...+....|+|+++
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~-----~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 89 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDK-----TVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC 89 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTS-----CEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCC-----EEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence 344555556667777 66 999888865544 899999732 3344566778999999
Q ss_pred EEEEEEeecCCCCCCcccceEeeccCCCceeEEeee--CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-
Q 039497 295 FIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRL--NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK- 371 (642)
Q Consensus 295 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~- 371 (642)
.|+....++. ..+| .+........+... ......|+|||++|+..+. ...|.++|+.+........
T Consensus 90 ~l~s~s~D~~------v~lw--d~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~ 158 (343)
T 2xzm_R 90 FAISSSWDKT------LRLW--DLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA---EREIKLWNILGECKFSSAEK 158 (343)
T ss_dssp EEEEEETTSE------EEEE--ETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET---TSCEEEEESSSCEEEECCTT
T ss_pred EEEEEcCCCc------EEEE--ECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC---CCEEEEEeccCCceeeeecc
Confidence 8887655443 3333 22222111111111 1245789999998887654 3677888887543332221
Q ss_pred ---cCCceeeeeecCC----------CEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCc
Q 039497 372 ---DRTAFYNSWSPTE----------KHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN 438 (642)
Q Consensus 372 ---~~~~~~~~~spdg----------~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 438 (642)
...+..+.|+|++ ..|+..+. ++.+++|+... . ....+..+. ..+
T Consensus 159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~-------d~~i~iwd~~~---------~-----~~~~~~~h~-~~v 216 (343)
T 2xzm_R 159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW-------DGRLKVWNTNF---------Q-----IRYTFKAHE-SNV 216 (343)
T ss_dssp TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEET-------TSEEEEEETTT---------E-----EEEEEECCS-SCE
T ss_pred cCCCceeeeeeeccccccccccCCCCCEEEEEcC-------CCEEEEEcCCC---------c-----eeEEEcCcc-ccc
Confidence 3457788999987 56666653 78899998321 1 334444454 678
Q ss_pred cCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEE
Q 039497 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVI 518 (642)
Q Consensus 439 ~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~ 518 (642)
..++|+|||++|+..+. +..|.+||+..... ....+. ....+..++|+|++++|+...... |.+|
T Consensus 217 ~~~~~s~~g~~l~sgs~---dg~v~iwd~~~~~~--~~~~~~-~~~~v~~v~~sp~~~~la~~~d~~---------v~iw 281 (343)
T 2xzm_R 217 NHLSISPNGKYIATGGK---DKKLLIWDILNLTY--PQREFD-AGSTINQIAFNPKLQWVAVGTDQG---------VKIF 281 (343)
T ss_dssp EEEEECTTSSEEEEEET---TCEEEEEESSCCSS--CSEEEE-CSSCEEEEEECSSSCEEEEEESSC---------EEEE
T ss_pred eEEEECCCCCEEEEEcC---CCeEEEEECCCCcc--cceeec-CCCcEEEEEECCCCCEEEEECCCC---------EEEE
Confidence 88999999999988774 34899999843331 022222 234577889999999877554432 8999
Q ss_pred eCCCCceEEeeec------------CCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 519 KPDGSGLRRIHVA------------GPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 519 d~~~~~~~~l~~~------------~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
++.+++...+... ++.. .+..++|+|||++|+..+.++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~v~~~~~sp~g~~l~sg~~Dg 331 (343)
T 2xzm_R 282 NLMTQSKAPVCTIEAEPITKAEGQKGKNP-------QCTSLAWNALGKKLFAGFTDG 331 (343)
T ss_dssp ESSSCCSCSEEECCCCSGGGBTTBCCSCC-------CEEEEEECSSSCCEEEEETTS
T ss_pred EeCCCCCCceEEeecCcchhhhhhcCCCC-------ceEEEEECCCCCeEEEecCCc
Confidence 9977654321111 1122 467899999999998877665
No 100
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.71 E-value=9.3e-15 Score=150.56 Aligned_cols=285 Identities=14% Similarity=0.147 Sum_probs=179.0
Q ss_pred ecccCCCccCCceeCCCC-cEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeec--CCC---cceEee-CCeEEE
Q 039497 134 RLTPYGVVDYSPSVSYSG-KFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCE--RGG---WPTWSG-DSTIYF 206 (642)
Q Consensus 134 ~lt~~~~~~~~~~~SPDG-~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--~~~---~~~wsp-dg~~~~ 206 (642)
.+..+.......+|+||| ++||....+. .|.+|++.+++....... +.. .+.|+| ++.+++
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg------------~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGG------------DIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTS------------CEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCC------------eEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence 444455556778999999 8999887665 699999998887766542 222 459999 567777
Q ss_pred EEecCCCceEEEEEecCCCcccccCCccceeeCCC---CCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCc
Q 039497 207 HRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPP---GVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFH 283 (642)
Q Consensus 207 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~ 283 (642)
+. ..++...+ +++.+. ....+... ...+..++|+|+|++|+....++ .+.+||+.
T Consensus 136 s~-~~d~~i~i--wd~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~d~~------ 193 (383)
T 3ei3_B 136 VS-SIRGATTL--RDFSGS--------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTG-----RLLLLGLD------ 193 (383)
T ss_dssp EE-ETTTEEEE--EETTSC--------EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTS-----EEEEEETT------
T ss_pred EE-eCCCEEEE--EECCCC--------ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCC-----CEEEEECC------
Confidence 76 56774444 455554 44444333 24577889999999988865443 88888861
Q ss_pred ccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCC-EEEEEecCCCceeEEEEECC
Q 039497 284 HYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGG-LIVFNHDFELNAGIKIAKSD 362 (642)
Q Consensus 284 ~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~l~~~d~~ 362 (642)
++.+... ..... ....+.|+|+++ .|+.... ...|.++|+.
T Consensus 194 ---------~~~~~~~-------------------~~h~~-------~v~~~~~~~~~~~~l~s~~~---d~~i~iwd~~ 235 (383)
T 3ei3_B 194 ---------GHEIFKE-------------------KLHKA-------KVTHAEFNPRCDWLMATSSV---DATVKLWDLR 235 (383)
T ss_dssp ---------SCEEEEE-------------------ECSSS-------CEEEEEECSSCTTEEEEEET---TSEEEEEEGG
T ss_pred ---------CCEEEEe-------------------ccCCC-------cEEEEEECCCCCCEEEEEeC---CCEEEEEeCC
Confidence 1111111 00000 112458999999 5555443 3578888887
Q ss_pred C----CCeeE-EeecCCceeeeeec-CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCC-
Q 039497 363 G----SKRWT-LIKDRTAFYNSWSP-TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEET- 435 (642)
Q Consensus 363 ~----~~~~~-l~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 435 (642)
. +.... +.....+..+.|+| +++.|+..+. ++.+++|++.. +. ....+..+..
T Consensus 236 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~-------d~~i~iwd~~~--------~~-----~~~~~~~~~~~ 295 (383)
T 3ei3_B 236 NIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQ-------RNEIRVYSSYD--------WS-----KPDQIIIHPHR 295 (383)
T ss_dssp GCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEES-------SSEEEEEETTB--------TT-----SCSEEEECCBC
T ss_pred CCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcC-------CCcEEEEECCC--------Cc-----ccccccccccc
Confidence 6 33322 22266788999999 9999988764 68999999865 12 2222221110
Q ss_pred ----CCccCcEECCCCCeEEEEeCC------CCceeEEEEECCCCccccceeeCCCC--CCcccceeEecCCCEEEEEec
Q 039497 436 ----GNNAFPSCSPDGKFLVFRSGR------SGHKNLFVLDAVNGEFNGDIRQLTDG--PWIDTMPSWSPKGDLIAFSSN 503 (642)
Q Consensus 436 ----~~~~~~~~SpDg~~l~~~~~~------~g~~~l~~~d~~~g~~~~~~~~l~~~--~~~~~~~~~spdG~~l~~~~~ 503 (642)
.......|+|++..++..... ..+..|++||+.+++. +..+... ...+..++|+|||++|+..+
T Consensus 296 ~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~---~~~l~~~~~~~~~~~~~~s~~g~~l~s~s- 371 (383)
T 3ei3_B 296 QFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGL---VHQLRDPNAAGIISLNKFSPTGDVLASGM- 371 (383)
T ss_dssp CCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCE---EEEECBTTBCSCCCEEEECTTSSEEEEEE-
T ss_pred ccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCce---eeeecCCCCCceEEEEEEecCccEEEEec-
Confidence 011123555555554433211 1345899999998886 5666542 34445569999999998886
Q ss_pred CCCCCCCCceeEEEEeCCC
Q 039497 504 RHNPDNVEAFSLYVIKPDG 522 (642)
Q Consensus 504 ~~~~~~~~~~~l~~~d~~~ 522 (642)
++. |.+||+++
T Consensus 372 d~~--------i~iw~~~~ 382 (383)
T 3ei3_B 372 GFN--------ILIWNRED 382 (383)
T ss_dssp TTE--------EEEEECC-
T ss_pred CCc--------EEEEecCC
Confidence 432 99999864
No 101
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.70 E-value=1.2e-14 Score=148.77 Aligned_cols=234 Identities=15% Similarity=0.115 Sum_probs=156.3
Q ss_pred CCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC
Q 039497 241 PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS 320 (642)
Q Consensus 241 ~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 320 (642)
+...+..++|+|||++|++.... ..+.+||+.... .-. +..+..
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d-----~~v~i~~~~~~~--------------~~~-----------------~~~~~~ 50 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNN-----HEVHIYEKSGNK--------------WVQ-----------------VHELKE 50 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSS-----SEEEEEEEETTE--------------EEE-----------------EEEEEC
T ss_pred cCCCeEEEEECCCCCEEEEEeCC-----CEEEEEeCCCCc--------------EEe-----------------eeeecC
Confidence 44467788999999988885433 378888873210 000 000000
Q ss_pred CCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCc
Q 039497 321 PVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIF 396 (642)
Q Consensus 321 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~ 396 (642)
.. .....+.|+|+|+.|+.... ...|.++++.+++...... ...+..+.|+|+++.|+....
T Consensus 51 h~-------~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---- 116 (372)
T 1k8k_C 51 HN-------GQVTGVDWAPDSNRIVTCGT---DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG---- 116 (372)
T ss_dssp CS-------SCEEEEEEETTTTEEEEEET---TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEET----
T ss_pred CC-------CcccEEEEeCCCCEEEEEcC---CCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeC----
Confidence 00 11124589999998888664 3567777877776433322 556889999999999988874
Q ss_pred ccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC--------
Q 039497 397 QSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV-------- 468 (642)
Q Consensus 397 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~-------- 468 (642)
++.+.+|++.. . ... .....+.......+..+.|+||+++|+..+.. ..|.+||+.
T Consensus 117 ---d~~v~i~d~~~--~------~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~ 180 (372)
T 1k8k_C 117 ---SRVISICYFEQ--E------NDW--WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD---FKCRIFSAYIKEVEERP 180 (372)
T ss_dssp ---TSSEEEEEEET--T------TTE--EEEEEECTTCCSCEEEEEECTTSSEEEEEETT---SCEEEEECCCTTTSCCC
T ss_pred ---CCEEEEEEecC--C------Ccc--eeeeeeecccCCCeeEEEEcCCCCEEEEEcCC---CCEEEEEcccccccccc
Confidence 68899999976 2 100 01223322222567889999999998877643 378888853
Q ss_pred ----------CCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCC
Q 039497 469 ----------NGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGD 538 (642)
Q Consensus 469 ----------~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 538 (642)
.++. +..+..+...+..+.|+|+|++|+..+.++. |.+||+.+++...... ....
T Consensus 181 ~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--------i~i~d~~~~~~~~~~~-~~~~--- 245 (372)
T 1k8k_C 181 APTPWGSKMPFGEL---MFESSSSCGWVHGVCFSANGSRVAWVSHDST--------VCLADADKKMAVATLA-SETL--- 245 (372)
T ss_dssp CCBTTBSCCCTTCE---EEECCCCSSCEEEEEECSSSSEEEEEETTTE--------EEEEEGGGTTEEEEEE-CSSC---
T ss_pred cccccccccchhhh---eEecCCCCCeEEEEEECCCCCEEEEEeCCCE--------EEEEECCCCceeEEEc-cCCC---
Confidence 4554 5566666667888999999999988887654 9999998776554443 2333
Q ss_pred cccccccceEEcCCCCEEEEE
Q 039497 539 VDRERINHVCFSADGEWLLFT 559 (642)
Q Consensus 539 ~~~~~~~~~~~S~Dg~~l~~~ 559 (642)
.+..+.|+|||+.|+..
T Consensus 246 ----~v~~~~~~~~~~~l~~~ 262 (372)
T 1k8k_C 246 ----PLLAVTFITESSLVAAG 262 (372)
T ss_dssp ----CEEEEEEEETTEEEEEE
T ss_pred ----CeEEEEEecCCCEEEEE
Confidence 56789999999866654
No 102
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.70 E-value=1.2e-14 Score=146.45 Aligned_cols=280 Identities=13% Similarity=0.077 Sum_probs=172.3
Q ss_pred EEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCC--ccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCC
Q 039497 204 IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGV--HCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPN 281 (642)
Q Consensus 204 ~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~ 281 (642)
++++. ..++ .|+.++..++. ....+..... ....++|||||++++++.... ..|++||+..
T Consensus 3 ~~v~~-~~~~--~v~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~----~~v~~~d~~~--- 65 (337)
T 1pby_B 3 YILAP-ARPD--KLVVIDTEKMA-------VDKVITIADAGPTPMVPMVAPGGRIAYATVNKS----ESLVKIDLVT--- 65 (337)
T ss_dssp EEEEE-ETTT--EEEEEETTTTE-------EEEEEECTTCTTCCCCEEECTTSSEEEEEETTT----TEEEEEETTT---
T ss_pred EEEEc-CCCC--eEEEEECCCCc-------EEEEEEcCCCCCCccceEEcCCCCEEEEEeCCC----CeEEEEECCC---
Confidence 34444 3445 78888888773 2233332221 366789999999888765432 3677777622
Q ss_pred CcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecC-----C----C
Q 039497 282 FHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDF-----E----L 352 (642)
Q Consensus 282 ~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-----~----~ 352 (642)
++.+... ..... . ........+.|+|||++|++.... . .
T Consensus 66 -----------~~~~~~~-----------------~~~~~-~---~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 113 (337)
T 1pby_B 66 -----------GETLGRI-----------------DLSTP-E---ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ 113 (337)
T ss_dssp -----------CCEEEEE-----------------ECCBT-T---EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred -----------CCeEeeE-----------------EcCCc-c---cccccccceEECCCCCEEEEEeccccccccccccc
Confidence 1111111 00000 0 001123456899999988886411 1 3
Q ss_pred ceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497 353 NAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT 431 (642)
Q Consensus 353 ~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 431 (642)
...|+++|+++++...... ...+..+.|+|||++|++.. ..+.+|++.. +. ....+.
T Consensus 114 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---------~~i~~~d~~~---------~~----~~~~~~ 171 (337)
T 1pby_B 114 PTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG---------RDLHVMDPEA---------GT----LVEDKP 171 (337)
T ss_dssp CCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES---------SSEEEEETTT---------TE----EEEEEC
T ss_pred CceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEeC---------CeEEEEECCC---------Cc----Eeeeee
Confidence 4789999998877554443 55677889999999988772 3566666533 21 222332
Q ss_pred ccCCCCccCcEECCCCCeEEEEeCCCCce---------------------eEEEEECCCCccccceeeCC--CCCCcccc
Q 039497 432 KEETGNNAFPSCSPDGKFLVFRSGRSGHK---------------------NLFVLDAVNGEFNGDIRQLT--DGPWIDTM 488 (642)
Q Consensus 432 ~~~~~~~~~~~~SpDg~~l~~~~~~~g~~---------------------~l~~~d~~~g~~~~~~~~l~--~~~~~~~~ 488 (642)
.. .......|+|||++|++.....+.. .|+++|+.+++. ..+. ........
T Consensus 172 ~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~----~~~~~~~~~~~~~~ 245 (337)
T 1pby_B 172 IQ--SWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM----AMREVRIMDVFYFS 245 (337)
T ss_dssp ST--TTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE----EEEEEEECSSCEEE
T ss_pred cc--ccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc----eEeecCCCCCceee
Confidence 22 2223568999999887665433321 589999998874 3322 22233456
Q ss_pred eeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccC
Q 039497 489 PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAE 568 (642)
Q Consensus 489 ~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~ 568 (642)
++|+|||++|++.. + .|++||+++++........ . .+..++|+|||++|++...+
T Consensus 246 ~~~s~dg~~l~~~~--~--------~v~~~d~~~~~~~~~~~~~--~-------~~~~~~~s~dg~~l~~~~~~------ 300 (337)
T 1pby_B 246 TAVNPAKTRAFGAY--N--------VLESFDLEKNASIKRVPLP--H-------SYYSVNVSTDGSTVWLGGAL------ 300 (337)
T ss_dssp EEECTTSSEEEEEE--S--------EEEEEETTTTEEEEEEECS--S-------CCCEEEECTTSCEEEEESBS------
T ss_pred EEECCCCCEEEEeC--C--------eEEEEECCCCcCcceecCC--C-------ceeeEEECCCCCEEEEEcCC------
Confidence 89999999988872 2 3999999887765444322 1 35689999999988876432
Q ss_pred CCCCCCCCCCCCcEEEEEcCCCce-eecc
Q 039497 569 PVSWPNQFQPYGDLYVVKLDGSGL-RRLT 596 (642)
Q Consensus 569 ~~~~~~~~~~~~~l~~~~~~~~~~-~~lt 596 (642)
..|.+|++.+++. ..+.
T Consensus 301 -----------~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 301 -----------GDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp -----------SEEEEEETTTCCEEEEEE
T ss_pred -----------CcEEEEECcCCcEEEEEE
Confidence 2899999987764 3443
No 103
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.70 E-value=1.3e-14 Score=148.13 Aligned_cols=292 Identities=12% Similarity=0.118 Sum_probs=164.0
Q ss_pred EEEEEeccCCceeeEEEEEeecC----------CCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeecc-CCCcee
Q 039497 257 LAVATRRKNRNFRHIEIYDLTLN----------PNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVA-SPVKEL 325 (642)
Q Consensus 257 l~~~~~~~~~~~~~i~~~d~~~~----------~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 325 (642)
.+|+..........|++|.+... .......++|+|||+.|++...++.. ......|..... +....+
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~--~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKD--QAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSST--TCEEEEEEEETTTTEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCC--CCcEEEEEEeCCCCcEEEe
Confidence 34444433333446666665211 22334456999999999888764211 111333433332 222222
Q ss_pred EEeeeCCCcc-EEcCCCCEEEEEecCCCceeEEEEECCCCC-eeE---Eee-c-----------CCceeeeeecCCCEEE
Q 039497 326 RMLRLNGSFP-SFSPDGGLIVFNHDFELNAGIKIAKSDGSK-RWT---LIK-D-----------RTAFYNSWSPTEKHVI 388 (642)
Q Consensus 326 ~~~~~~~~~~-~~spdg~~l~~~~~~~~~~~l~~~d~~~~~-~~~---l~~-~-----------~~~~~~~~spdg~~l~ 388 (642)
......+..+ .++.||++|++.... ...|.+++++... ... ... . ..+..+.|+|||++|+
T Consensus 93 ~~~~~~~~~p~~~~~dg~~l~~~~~~--~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~ 170 (361)
T 3scy_A 93 NTQKTMGADPCYLTTNGKNIVTANYS--GGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL 170 (361)
T ss_dssp EEEECSSSCEEEEEECSSEEEEEETT--TTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred eEeccCCCCcEEEEECCCEEEEEECC--CCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence 2222122222 234489988776643 3567777765322 111 111 1 1235689999999998
Q ss_pred EEEcCCCcccCCCeEEEEEEEeecCCCCCCCC----Cccccc--eEEccccCCCCccCcEECCCCCeEEEEeCCCCceeE
Q 039497 389 YTSTGPIFQSERATVQIARVSFQLDPSDDNNR----EEIPCD--VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNL 462 (642)
Q Consensus 389 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~--~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l 462 (642)
++.. ....+.+|+++. . ++ ..+... ...+..........++|||||++|++....++ .|
T Consensus 171 ~~~~------~~~~v~v~~~~~--~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~--~v 235 (361)
T 3scy_A 171 ADDL------GTDQIHKFNINP--N-----ANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGG--TV 235 (361)
T ss_dssp EEET------TTTEEEEEEECT--T-----CCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTC--EE
T ss_pred EEeC------CCCEEEEEEEcC--C-----CCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCC--eE
Confidence 8874 367889998875 2 11 001000 01111111134567899999999988875443 68
Q ss_pred EEEECCCCccccceeeCCC---CCCcccceeEecCCCEEEEEecC-CCCCCCCceeEEEEeC--CCCceEEeeecCCCCC
Q 039497 463 FVLDAVNGEFNGDIRQLTD---GPWIDTMPSWSPKGDLIAFSSNR-HNPDNVEAFSLYVIKP--DGSGLRRIHVAGPEGS 536 (642)
Q Consensus 463 ~~~d~~~g~~~~~~~~l~~---~~~~~~~~~~spdG~~l~~~~~~-~~~~~~~~~~l~~~d~--~~~~~~~l~~~~~~~~ 536 (642)
.+|++.+|+. ..+..+.. .......++|||||++|++.... . + .|.+|++ .+++.+.+.......
T Consensus 236 ~v~~~~~g~~-~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~-----~--~i~v~~~~~~~g~~~~~~~~~~g~- 306 (361)
T 3scy_A 236 IAFRYADGML-DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA-----D--GVAIFKVDETNGTLTKVGYQLTGI- 306 (361)
T ss_dssp EEEEEETTEE-EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS-----C--EEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEEecCCce-EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC-----C--EEEEEEEcCCCCcEEEeeEecCCC-
Confidence 8888777763 00122211 11223578999999998877765 2 2 3666655 466665554322222
Q ss_pred CCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc
Q 039497 537 GDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596 (642)
Q Consensus 537 ~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt 596 (642)
.+..++|||||++|++.....+.. .||.+|..+++++.+.
T Consensus 307 ------~~~~~~~spdg~~l~~~~~~~~~v--------------~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 307 ------HPRNFIITPNGKYLLVACRDTNVI--------------QIFERDQATGLLTDIK 346 (361)
T ss_dssp ------CCCEEEECTTSCEEEEEETTTTEE--------------EEEEECTTTCCEEECS
T ss_pred ------CCceEEECCCCCEEEEEECCCCCE--------------EEEEEECCCCcEeecc
Confidence 456899999999998887554322 5666787788877665
No 104
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.69 E-value=6.5e-15 Score=149.78 Aligned_cols=303 Identities=10% Similarity=0.047 Sum_probs=184.1
Q ss_pred CCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee-cC-C--CcceEeeC---CeEEEEEec
Q 039497 138 YGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC-ER-G--GWPTWSGD---STIYFHRQA 210 (642)
Q Consensus 138 ~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~-~--~~~~wspd---g~~~~~~~~ 210 (642)
+.......+|||||++++...... .....|.+|++.+++...+.. .+ . ..+.|+|+ +.++++. .
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~--------~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~-~ 87 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFA--------RGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATG-D 87 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC----------CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEE-E
T ss_pred CCCceEEEEEcCCCceEEEecCcc--------CCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEe-c
Confidence 444456789999998877654320 014579999999988654433 22 2 24699998 5777776 4
Q ss_pred CCCceEEEEEecCCCcccccCCccceeeCCCCCccccc------eeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcc
Q 039497 211 DDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTP------AAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHH 284 (642)
Q Consensus 211 ~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~ 284 (642)
.+|...+ ++..++.. ....+..+...+..+ +|+|+|++|+....++ .+.+||+......
T Consensus 88 ~dg~i~i--wd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~-----~i~vwd~~~~~~~-- 152 (357)
T 3i2n_A 88 FGGNLHI--WNLEAPEM------PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDG-----TVKVWDPRQKDDP-- 152 (357)
T ss_dssp TTSCEEE--ECTTSCSS------CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTS-----CEEEECTTSCSSC--
T ss_pred CCCeEEE--EeCCCCCc------cEEEEEecccceEEEeeccccccCCCccEEEEEeCCC-----eEEEEeCCCCCCc--
Confidence 5675445 45554420 345555555455555 5689999988865544 7889987332100
Q ss_pred cCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCC-CceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCC
Q 039497 285 YNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASP-VKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG 363 (642)
Q Consensus 285 ~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~ 363 (642)
...+...... ...+.... ..+.|+|+++.|+.... ...|.++|+.+
T Consensus 153 ---------------------------~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~l~~~~~---d~~i~i~d~~~ 199 (357)
T 3i2n_A 153 ---------------------------VANMEPVQGENKRDCWTVA---FGNAYNQEERVVCAGYD---NGDIKLFDLRN 199 (357)
T ss_dssp ---------------------------SEEECCCTTSCCCCEEEEE---EECCCC-CCCEEEEEET---TSEEEEEETTT
T ss_pred ---------------------------ceeccccCCCCCCceEEEE---EEeccCCCCCEEEEEcc---CCeEEEEECcc
Confidence 0000000000 00111010 12347899998888654 36899999998
Q ss_pred CCeeEEee-cCCceeeeeec---CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCcc
Q 039497 364 SKRWTLIK-DRTAFYNSWSP---TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNA 439 (642)
Q Consensus 364 ~~~~~l~~-~~~~~~~~~sp---dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 439 (642)
++...... ...+..+.|+| +++.|+.... ++.+.+|++.. +..........+..+. ..+.
T Consensus 200 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~--------~~~~~~~~~~~~~~~~-~~v~ 263 (357)
T 3i2n_A 200 MALRWETNIKNGVCSLEFDRKDISMNKLVATSL-------EGKFHVFDMRT--------QHPTKGFASVSEKAHK-STVW 263 (357)
T ss_dssp TEEEEEEECSSCEEEEEESCSSSSCCEEEEEES-------TTEEEEEEEEE--------EETTTEEEEEEEECCS-SCEE
T ss_pred CceeeecCCCCceEEEEcCCCCCCCCEEEEECC-------CCeEEEEeCcC--------CCcccceeeeccCCCc-CCEE
Confidence 87655444 67788999999 9999888764 78999999976 1100000011122444 6778
Q ss_pred CcEECCCCCeEEEEeCCCCceeEEEEECCCCccc----------------cceeeCCCCCCcccceeEecCCCEEEE-Ee
Q 039497 440 FPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN----------------GDIRQLTDGPWIDTMPSWSPKGDLIAF-SS 502 (642)
Q Consensus 440 ~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~----------------~~~~~l~~~~~~~~~~~~spdG~~l~~-~~ 502 (642)
.+.|+|+|+.++++...++ .|.+|++.++... ..+..+..+...+..++|+|+|++|++ .+
T Consensus 264 ~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~ 341 (357)
T 3i2n_A 264 QVRHLPQNRELFLTAGGAG--GLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSS 341 (357)
T ss_dssp EEEEETTEEEEEEEEETTS--EEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEE
T ss_pred EEEECCCCCcEEEEEeCCC--cEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEec
Confidence 8999999995444544444 6777787654320 013344555667788999999999985 44
Q ss_pred cCCCCCCCCceeEEEEeCCCC
Q 039497 503 NRHNPDNVEAFSLYVIKPDGS 523 (642)
Q Consensus 503 ~~~~~~~~~~~~l~~~d~~~~ 523 (642)
.++ .|++||+...
T Consensus 342 ~d~--------~i~iw~~~~~ 354 (357)
T 3i2n_A 342 FDQ--------TVRVLIVTKL 354 (357)
T ss_dssp TTS--------EEEEEEECC-
T ss_pred CCC--------cEEEEECCCc
Confidence 443 3899998653
No 105
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.69 E-value=2.5e-14 Score=147.99 Aligned_cols=305 Identities=11% Similarity=0.028 Sum_probs=191.2
Q ss_pred EecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCC-------ceeEeecCC--CcceEeeC--
Q 039497 133 TRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPN-------KRVIVCERG--GWPTWSGD-- 201 (642)
Q Consensus 133 ~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~l~~~~~--~~~~wspd-- 201 (642)
..+..+.......+|+| ++||....++ .|.+|++.+++ ...+..... ..+.|+|+
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg------------~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 75 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDG------------YLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIE 75 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTS------------EEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCC------------EEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccc
Confidence 34445555567788998 7888887665 79999999987 333332222 24599999
Q ss_pred --C---eEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCC-----CCccccceee----cCCcE-EEEEEeccCC
Q 039497 202 --S---TIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPP-----GVHCFTPAAF----HDGKR-LAVATRRKNR 266 (642)
Q Consensus 202 --g---~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~S----pdG~~-l~~~~~~~~~ 266 (642)
+ .++++. ..+|...+|.+....... ......+..+ ...+..++|+ |+|++ |+....++
T Consensus 76 ~~g~~~~~l~s~-~~dg~i~iw~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg-- 148 (397)
T 1sq9_A 76 RDAFELCLVATT-SFSGDLLFYRITREDETK----KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG-- 148 (397)
T ss_dssp TTTEEEEEEEEE-ETTSCEEEEEEEECTTTC----CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS--
T ss_pred cCCccccEEEEE-cCCCCEEEEEccCCcccc----cccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC--
Confidence 8 888877 567866666654332100 0004555555 3567788999 99999 77755443
Q ss_pred ceeeEEEEEeecCCCCc-ccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEE
Q 039497 267 NFRHIEIYDLTLNPNFH-HYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIV 345 (642)
Q Consensus 267 ~~~~i~~~d~~~~~~~~-~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 345 (642)
.+.+||+....... .....|++.+...... .... ........+.|+|+| .|+
T Consensus 149 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~------~~~~~i~~~~~~~~~-~l~ 201 (397)
T 1sq9_A 149 ---TTYIWKFHPFADESNSLTLNWSPTLELQGTV-----------------ESPM------TPSQFATSVDISERG-LIA 201 (397)
T ss_dssp ---CEEEEEEESSSSHHHHTTTCCCCEEEEEEEE-----------------CCSS------SSCCCCCEEEECTTS-EEE
T ss_pred ---cEEEEeCCccccccccceeeccCcceeeeee-----------------cccc------CCCCCceEEEECCCc-eEE
Confidence 79999985410000 0011122211100000 0000 001122456899999 666
Q ss_pred EEecCCCceeEEEEECCCCCeeEEee--------cCCceeeeeecCCCEEEEEEcCCCcccCC---CeEEEEEEEeecCC
Q 039497 346 FNHDFELNAGIKIAKSDGSKRWTLIK--------DRTAFYNSWSPTEKHVIYTSTGPIFQSER---ATVQIARVSFQLDP 414 (642)
Q Consensus 346 ~~~~~~~~~~l~~~d~~~~~~~~l~~--------~~~~~~~~~spdg~~l~~~~~~~~~~~~~---~~~~l~~~~~~~~~ 414 (642)
.... ...|.++|+..++...... ...+..+.|+|+++.|+.... + +.+.+|++..
T Consensus 202 ~~~~---dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~-------d~~~g~i~i~d~~~---- 267 (397)
T 1sq9_A 202 TGFN---NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD-------SNSFGCITLYETEF---- 267 (397)
T ss_dssp EECT---TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEE-------ETTEEEEEEEETTT----
T ss_pred EEeC---CCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEec-------CCCCceEEEEECCC----
Confidence 6443 4678999998776543322 446788999999999988764 4 6888888754
Q ss_pred CCCCCCCccccceEEccc-------------cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-
Q 039497 415 SDDNNREEIPCDVKILTK-------------EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT- 480 (642)
Q Consensus 415 ~~~~~~~~~~~~~~~l~~-------------~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~- 480 (642)
+. ....+.. +. ..+..+.|+|||++|+..+. ...|.+||+.+++. +..+.
T Consensus 268 ----~~-----~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~---~~~~~~ 331 (397)
T 1sq9_A 268 ----GE-----RIGSLSVPTHSSQASLGEFAHS-SWVMSLSFNDSGETLCSAGW---DGKLRFWDVKTKER---ITTLNM 331 (397)
T ss_dssp ----CC-----EEEEECBC--------CCBSBS-SCEEEEEECSSSSEEEEEET---TSEEEEEETTTTEE---EEEEEC
T ss_pred ----Cc-----ccceeccCcccccccccccccC-CcEEEEEECCCCCEEEEEeC---CCeEEEEEcCCCce---eEEEec
Confidence 22 4444544 44 67788999999999887773 34899999998886 55555
Q ss_pred -----CC---------------CCcccceeEecCC----------CEEEEEecCCCCCCCCceeEEEEeCCCC
Q 039497 481 -----DG---------------PWIDTMPSWSPKG----------DLIAFSSNRHNPDNVEAFSLYVIKPDGS 523 (642)
Q Consensus 481 -----~~---------------~~~~~~~~~spdG----------~~l~~~~~~~~~~~~~~~~l~~~d~~~~ 523 (642)
.+ ...+..++|+|+| ++|+..+.++. |.+|+++++
T Consensus 332 ~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~--------i~iw~~~~g 396 (397)
T 1sq9_A 332 HCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRS--------IRWFREAGG 396 (397)
T ss_dssp CGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTE--------EEEEEEEC-
T ss_pred ccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCc--------EEEEEcCCC
Confidence 44 5667889999999 67777776654 889998765
No 106
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=99.68 E-value=1.9e-14 Score=141.41 Aligned_cols=190 Identities=15% Similarity=0.217 Sum_probs=139.8
Q ss_pred EEcCCCCEEEEEe-cCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCC
Q 039497 336 SFSPDGGLIVFNH-DFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414 (642)
Q Consensus 336 ~~spdg~~l~~~~-~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 414 (642)
.|+++|++|+|.. ...+...|+++++++...++|+.... +.++|+|+.|+|++. +...|+.+++ +
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~---~~~~~~g~~iy~t~~--------g~~~Iy~~~l--~- 175 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL---FTCNTSDRYFYYNNP--------KNGQLYRYDT--A- 175 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC---CCSEEETTEEEEECT--------TTCCEEEEET--T-
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc---eEeeEECCEEEEEeC--------CCceEEEEEC--C-
Confidence 6788889998876 23567899999999988888876332 567999999999973 3446777877 4
Q ss_pred CCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecC
Q 039497 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494 (642)
Q Consensus 415 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spd 494 (642)
++ ..+.|.... ...+ ++|+|++|+|+....+ .+|++++++++.. +.|+... .+.|+|+
T Consensus 176 ----g~-----~~~~l~~~~---~~~~-~~P~g~~iy~t~~~~~-~~I~~~~ldG~~~----~~Lt~~~----~~~~~~~ 233 (302)
T 3s25_A 176 ----SQ-----SEALFYDCN---CYKP-VVLDDTNVYYMDVNRD-NAIVHVNINNPNP----VVLTEAN----IEHYNVY 233 (302)
T ss_dssp ----TT-----EEEEEECSC---EEEE-EEEETTEEEEEEGGGT-TEEEEECSSSCCC----EECSCSC----EEEEEEE
T ss_pred ----CC-----CEEEEeCCC---ccce-eeecCCEEEEEEcCCC-cEEEEEECCCCCe----EEEeCCC----cceEEEC
Confidence 33 455564432 2223 5699999999876543 6899999997774 7787543 2679999
Q ss_pred CCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCC
Q 039497 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPN 574 (642)
Q Consensus 495 G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~ 574 (642)
|++|+|..... ...|++++++|...++|... . ...+++.+.+|+|+....+
T Consensus 234 g~~Iy~~~~~~------~~~i~~~~~DG~~r~~l~~~--~-----------~~~i~i~~d~Iy~td~~~~---------- 284 (302)
T 3s25_A 234 GSLIFYQRGGD------NPALCVVKNDGTGFKELAKG--E-----------FCNINVTSQYVYFTDFVSN---------- 284 (302)
T ss_dssp TTEEEEEECSS------SCEEEEEETTSCCCEEEEES--C-----------EEEEEECSSEEEEEETTTC----------
T ss_pred CCEEEEEECCC------CcEEEEEECCCCccEEeeCC--c-----------cceEEEeCCEEEEEECCCC----------
Confidence 99999876542 25799999999888888752 1 2367889999999985432
Q ss_pred CCCCCCcEEEEEcCCCceeecc
Q 039497 575 QFQPYGDLYVVKLDGSGLRRLT 596 (642)
Q Consensus 575 ~~~~~~~l~~~~~~~~~~~~lt 596 (642)
.|++++++|...++|.
T Consensus 285 ------~i~~~~~dGs~~~~l~ 300 (302)
T 3s25_A 285 ------KEYCTSTQNPDTIKAL 300 (302)
T ss_dssp ------CEEEEESSSCCSCEEC
T ss_pred ------eEEEEECCCCCceEec
Confidence 6999999887766554
No 107
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.68 E-value=1.8e-14 Score=147.46 Aligned_cols=289 Identities=10% Similarity=-0.022 Sum_probs=181.3
Q ss_pred CCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCC--ceeEeecCC---CcceEeeCCeEEEEEecCC
Q 039497 138 YGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPN--KRVIVCERG---GWPTWSGDSTIYFHRQADD 212 (642)
Q Consensus 138 ~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~l~~~~~---~~~~wspdg~~~~~~~~~~ 212 (642)
+.......+|||||++||+...+. .|++|++.+++ .......+. ..+.|+|++.++++. ..+
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~------------~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~~d 73 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNH------------EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC-GTD 73 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSS------------EEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEE-ETT
T ss_pred cCCCeEEEEECCCCCEEEEEeCCC------------EEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEE-cCC
Confidence 344456789999999999886554 79999999885 222222222 246999999888877 467
Q ss_pred CceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCC
Q 039497 213 GWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSAN 292 (642)
Q Consensus 213 g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spD 292 (642)
|...+|.+ .++.. .....+..+...+..++|+|+|++|+.....+ .+.+||+......
T Consensus 74 g~i~vwd~--~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~~~~~---------- 131 (372)
T 1k8k_C 74 RNAYVWTL--KGRTW-----KPTLVILRINRAARCVRWAPNEKKFAVGSGSR-----VISICYFEQENDW---------- 131 (372)
T ss_dssp SCEEEEEE--ETTEE-----EEEEECCCCSSCEEEEEECTTSSEEEEEETTS-----SEEEEEEETTTTE----------
T ss_pred CeEEEEEC--CCCee-----eeeEEeecCCCceeEEEECCCCCEEEEEeCCC-----EEEEEEecCCCcc----------
Confidence 86666655 44310 01222344555678889999999998866443 7888887432200
Q ss_pred CCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECC----------
Q 039497 293 SEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD---------- 362 (642)
Q Consensus 293 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~---------- 362 (642)
.... ........ ....+.|+|+++.|+.... ...|.++|+.
T Consensus 132 ---~~~~----------------~~~~~~~~-------~i~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~ 182 (372)
T 1k8k_C 132 ---WVCK----------------HIKKPIRS-------TVLSLDWHPNSVLLAAGSC---DFKCRIFSAYIKEVEERPAP 182 (372)
T ss_dssp ---EEEE----------------EECTTCCS-------CEEEEEECTTSSEEEEEET---TSCEEEEECCCTTTSCCCCC
T ss_pred ---eeee----------------eeecccCC-------CeeEEEEcCCCCEEEEEcC---CCCEEEEEcccccccccccc
Confidence 0000 00000000 1124589999998887654 3567777753
Q ss_pred --------CCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc
Q 039497 363 --------GSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK 432 (642)
Q Consensus 363 --------~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 432 (642)
.++...... ...+..+.|+|+++.|+..+. ++.+++|++.. +. ....+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------d~~i~i~d~~~--------~~-----~~~~~~~ 242 (372)
T 1k8k_C 183 TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH-------DSTVCLADADK--------KM-----AVATLAS 242 (372)
T ss_dssp BTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET-------TTEEEEEEGGG--------TT-----EEEEEEC
T ss_pred cccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC-------CCEEEEEECCC--------Cc-----eeEEEcc
Confidence 333322222 456889999999999888874 67899999865 22 4555555
Q ss_pred cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC--Cccc----------------------------c-ce-----
Q 039497 433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN--GEFN----------------------------G-DI----- 476 (642)
Q Consensus 433 ~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~--g~~~----------------------------~-~~----- 476 (642)
+. ..+..+.|+|||+.|+.. .++ .|.+|++.+ |+.. . ..
T Consensus 243 ~~-~~v~~~~~~~~~~~l~~~--~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (372)
T 1k8k_C 243 ET-LPLLAVTFITESSLVAAG--HDC--FPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAA 317 (372)
T ss_dssp SS-CCEEEEEEEETTEEEEEE--TTS--SCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--------
T ss_pred CC-CCeEEEEEecCCCEEEEE--eCC--eEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccc
Confidence 54 567889999999877655 334 566666665 4210 0 00
Q ss_pred -eeC-CCCCCcccceeEe-cCC---CEEEEEecCCCCCCCCceeEEEEeCCCC
Q 039497 477 -RQL-TDGPWIDTMPSWS-PKG---DLIAFSSNRHNPDNVEAFSLYVIKPDGS 523 (642)
Q Consensus 477 -~~l-~~~~~~~~~~~~s-pdG---~~l~~~~~~~~~~~~~~~~l~~~d~~~~ 523 (642)
..+ ..+...+..++|+ ++| ++|+..+.++. |.+|++.++
T Consensus 318 ~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~--------i~~W~~~~~ 362 (372)
T 1k8k_C 318 GAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG--------MSIWDVRSL 362 (372)
T ss_dssp -CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSE--------EEEEEHHHH
T ss_pred cccccccccCCcceeEEecCCCcceeeEEEecCCCc--------eEEEEecCh
Confidence 122 2444566777765 677 88888887764 899998653
No 108
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.68 E-value=3e-14 Score=147.80 Aligned_cols=270 Identities=13% Similarity=0.072 Sum_probs=176.3
Q ss_pred eecCCcEEEEEEeccCCceeeEEEEEeec---------CCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC
Q 039497 250 AFHDGKRLAVATRRKNRNFRHIEIYDLTL---------NPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS 320 (642)
Q Consensus 250 ~SpdG~~l~~~~~~~~~~~~~i~~~d~~~---------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 320 (642)
+++++..++.+...+ .+++||+.. .+...+....|+|||+.|+....++. ..+| .+..
T Consensus 99 ~~~s~~~l~~~~~d~-----~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~------i~iw--d~~~ 165 (401)
T 4aez_A 99 LDWSNLNVVAVALER-----NVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGL------VDIY--DVES 165 (401)
T ss_dssp EEECTTSEEEEEETT-----EEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSC------EEEE--ETTT
T ss_pred EeecCCCEEEEECCC-----eEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCe------EEEE--ECcC
Confidence 333445566655443 799999822 23555678899999999988765543 2223 2222
Q ss_pred CCceeEEeeeCC--CccEEcCCCCEEEEEecCCCceeEEEEECCCCCe-eEEee--cCCceeeeeecCCCEEEEEEcCCC
Q 039497 321 PVKELRMLRLNG--SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR-WTLIK--DRTAFYNSWSPTEKHVIYTSTGPI 395 (642)
Q Consensus 321 ~~~~~~~~~~~~--~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~-~~l~~--~~~~~~~~~spdg~~l~~~~~~~~ 395 (642)
......+..... ....| +++.|+.... ...|.++++..... ..... ...+..+.|+|+++.|+..+.
T Consensus 166 ~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--- 237 (401)
T 4aez_A 166 QTKLRTMAGHQARVGCLSW--NRHVLSSGSR---SGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN--- 237 (401)
T ss_dssp CCEEEEECCCSSCEEEEEE--ETTEEEEEET---TSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET---
T ss_pred CeEEEEecCCCCceEEEEE--CCCEEEEEcC---CCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC---
Confidence 211111111111 23345 6676766554 36788889874332 22222 567889999999999988874
Q ss_pred cccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccc
Q 039497 396 FQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGD 475 (642)
Q Consensus 396 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~ 475 (642)
++.+++|++.. +. ....+..+. ..+..+.|+|++..++.+........|.+||+.+++.
T Consensus 238 ----d~~v~iwd~~~--------~~-----~~~~~~~~~-~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~--- 296 (401)
T 4aez_A 238 ----DNVVQIWDARS--------SI-----PKFTKTNHN-AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR--- 296 (401)
T ss_dssp ----TSCEEEEETTC--------SS-----EEEEECCCS-SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE---
T ss_pred ----CCeEEEccCCC--------CC-----ccEEecCCc-ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE---
Confidence 67899999854 12 344555554 6788899999998888876422345899999998885
Q ss_pred eeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee-cCCCCCCCcccccccceEEcCCCC
Q 039497 476 IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV-AGPEGSGDVDRERINHVCFSADGE 554 (642)
Q Consensus 476 ~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~S~Dg~ 554 (642)
+..+. ....+..+.|+|+|+.|+..+... ...|++|++.+++...+.. .++.. .+..+.|+|||+
T Consensus 297 ~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~------dg~i~v~~~~~~~~~~~~~~~~h~~-------~v~~~~~s~dg~ 362 (401)
T 4aez_A 297 VNTVD-AGSQVTSLIWSPHSKEIMSTHGFP------DNNLSIWSYSSSGLTKQVDIPAHDT-------RVLYSALSPDGR 362 (401)
T ss_dssp EEEEE-CSSCEEEEEECSSSSEEEEEECTT------TCEEEEEEEETTEEEEEEEEECCSS-------CCCEEEECTTSS
T ss_pred EEEEe-CCCcEEEEEECCCCCeEEEEeecC------CCcEEEEecCCccceeEEEecCCCC-------CEEEEEECCCCC
Confidence 44443 445678899999999999876321 1248999998766554432 23444 578899999999
Q ss_pred EEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce
Q 039497 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL 592 (642)
Q Consensus 555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 592 (642)
+|+..+.++ .|.+|++..++.
T Consensus 363 ~l~s~~~dg-----------------~i~iw~~~~~~~ 383 (401)
T 4aez_A 363 ILSTAASDE-----------------NLKFWRVYDGDH 383 (401)
T ss_dssp EEEEECTTS-----------------EEEEEECCC---
T ss_pred EEEEEeCCC-----------------cEEEEECCCCcc
Confidence 998877654 788888877653
No 109
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.68 E-value=2.3e-14 Score=159.47 Aligned_cols=299 Identities=11% Similarity=0.053 Sum_probs=191.6
Q ss_pred eecCCcEEEEEEeccCCceeeEE----------EEEee---cCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEe
Q 039497 250 AFHDGKRLAVATRRKNRNFRHIE----------IYDLT---LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLE 316 (642)
Q Consensus 250 ~SpdG~~l~~~~~~~~~~~~~i~----------~~d~~---~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~ 316 (642)
.+++|.++++.....+....-++ ++|.. ..+......+.|||||++|+|....+.. ....+++.
T Consensus 84 p~~~g~~~y~~~~~~~~~~~~~~r~~~~~~~~vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~---~~~~i~v~ 160 (693)
T 3iuj_A 84 PFREGRYHYFFKNDGLQNQNVLWRQQEGKPAEVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGS---DWREIHLM 160 (693)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEECTTSCCEEEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSC---CEEEEEEE
T ss_pred CEEECCEEEEEEEcCCCceeEEEEeCCCCCcEEEEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCC---ceEEEEEE
Confidence 35678888876654433332222 34441 1222344567999999999998765442 12345666
Q ss_pred eccCCC-ceeEEeeeCCCccEEcCCCCEEEEEecC----------CCceeEEEEECCCCCe--eEEeec-C----Cceee
Q 039497 317 PVASPV-KELRMLRLNGSFPSFSPDGGLIVFNHDF----------ELNAGIKIAKSDGSKR--WTLIKD-R----TAFYN 378 (642)
Q Consensus 317 ~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~----------~~~~~l~~~d~~~~~~--~~l~~~-~----~~~~~ 378 (642)
++.... ............++|+ ||+.|+|.... ....+||++++.++.. +.+... . ....+
T Consensus 161 dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~ 239 (693)
T 3iuj_A 161 DVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGA 239 (693)
T ss_dssp ETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEE
T ss_pred ECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEE
Confidence 665443 2222222224578999 99999998764 2346799999877653 344332 2 24578
Q ss_pred eeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCC
Q 039497 379 SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG 458 (642)
Q Consensus 379 ~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g 458 (642)
.|||||++|++.... ......+|.++. + ++.. ..+.|.... .....+ |+++|++|+|.+++++
T Consensus 240 ~~SpDg~~l~~~~~~-----~~~~~~i~~~d~--~-----~~~~---~~~~l~~~~-~~~~~~-~~~~g~~l~~~t~~~~ 302 (693)
T 3iuj_A 240 TVTEDDRFLLISAAN-----STSGNRLYVKDL--S-----QENA---PLLTVQGDL-DADVSL-VDNKGSTLYLLTNRDA 302 (693)
T ss_dssp EECTTSCEEEEEEES-----SSSCCEEEEEET--T-----STTC---CCEEEECSS-SSCEEE-EEEETTEEEEEECTTC
T ss_pred EEcCCCCEEEEEEcc-----CCCCcEEEEEEC--C-----CCCC---ceEEEeCCC-CceEEE-EeccCCEEEEEECCCC
Confidence 999999999988742 112234555554 2 1111 456666554 333333 8899999999988754
Q ss_pred -ceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCC
Q 039497 459 -HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSG 537 (642)
Q Consensus 459 -~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 537 (642)
...|+++++++++. ...+.|+.+..... .|+++|++|++....+ +..+|++++++++..+.+.... .+
T Consensus 303 ~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~-----g~~~l~~~d~~g~~~~~l~~p~-~~-- 371 (693)
T 3iuj_A 303 PNRRLVTVDAANPGP-AHWRDLIPERQQVL--TVHSGSGYLFAEYMVD-----ATARVEQFDYEGKRVREVALPG-LG-- 371 (693)
T ss_dssp TTCEEEEEETTSCCG-GGCEEEECCCSSCE--EEEEETTEEEEEEEET-----TEEEEEEECTTSCEEEEECCSS-SS--
T ss_pred CCCEEEEEeCCCCCc-cccEEEecCCCCEE--EEEEECCEEEEEEEEC-----CeeEEEEEECCCCeeEEeecCC-Cc--
Confidence 56999999987652 11245555544333 9999999999988765 4678999999988777765422 22
Q ss_pred CcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCC
Q 039497 538 DVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN 598 (642)
Q Consensus 538 ~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~ 598 (642)
.+..+.+++|++.|++....... ...||.+|+.+++.+.|...
T Consensus 372 -----~~~~~~~~~d~~~l~~~~ss~~t-------------P~~l~~~d~~~g~~~~l~~~ 414 (693)
T 3iuj_A 372 -----SVSGFNGKHDDPALYFGFENYAQ-------------PPTLYRFEPKSGAISLYRAS 414 (693)
T ss_dssp -----EEEECCCCTTCSCEEEEEECSSS-------------CCEEEEECTTTCCEEEEECC
T ss_pred -----eEEeeecCCCCCEEEEEecCCCC-------------CCEEEEEECCCCeEEEEEeC
Confidence 34567788999999988764321 24899999988887777654
No 110
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.68 E-value=6.6e-15 Score=154.60 Aligned_cols=296 Identities=13% Similarity=0.102 Sum_probs=179.2
Q ss_pred ceEeeC-CeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeec-CCcEEEEEEeccCCceeeEEE
Q 039497 196 PTWSGD-STIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFH-DGKRLAVATRRKNRNFRHIEI 273 (642)
Q Consensus 196 ~~wspd-g~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp-dG~~l~~~~~~~~~~~~~i~~ 273 (642)
++|+|. +.++++. ..+|...|| +..++.. .....+..+...+..++|+| ||++|+.+..+ ..|.+
T Consensus 125 l~~~P~~~~~lasG-s~dg~i~lW--d~~~~~~-----~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D-----~~v~i 191 (435)
T 4e54_B 125 LAWHPTHPSTVAVG-SKGGDIMLW--NFGIKDK-----PTFIKGIGAGGSITGLKFNPLNTNQFYASSME-----GTTRL 191 (435)
T ss_dssp EEECSSCTTCEEEE-ETTSCEEEE--CSSCCSC-----CEEECCCSSSCCCCEEEECSSCTTEEEEECSS-----SCEEE
T ss_pred EEEeCCCCCEEEEE-eCCCEEEEE--ECCCCCc-----eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC-----CEEEE
Confidence 799995 4677777 567855555 5444310 01223345666788899998 78888875443 37899
Q ss_pred EEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCc
Q 039497 274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN 353 (642)
Q Consensus 274 ~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 353 (642)
||+... .+........ . ......+.|+|+|+.|+.... .
T Consensus 192 wd~~~~---------------~~~~~~~~~~----------------~-------~~~~~~~~~~~~~~~l~~g~~---d 230 (435)
T 4e54_B 192 QDFKGN---------------ILRVFASSDT----------------I-------NIWFCSLDVSASSRMVVTGDN---V 230 (435)
T ss_dssp EETTSC---------------EEEEEECCSS----------------C-------SCCCCCEEEETTTTEEEEECS---S
T ss_pred eeccCC---------------ceeEEeccCC----------------C-------CccEEEEEECCCCCEEEEEeC---C
Confidence 987211 1110000000 0 011134588999998877543 4
Q ss_pred eeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc
Q 039497 354 AGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK 432 (642)
Q Consensus 354 ~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 432 (642)
..|.++|+++.....+.. ...+..+.|+|+++.++++.. .++.+++|++.. .... ........
T Consensus 231 g~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s------~d~~v~iwd~~~--------~~~~--~~~~~~~~ 294 (435)
T 4e54_B 231 GNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATAS------VDQTVKIWDLRQ--------VRGK--ASFLYSLP 294 (435)
T ss_dssp SBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEE------TTSBCCEEETTT--------CCSS--SCCSBCCB
T ss_pred CcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEec------CcceeeEEeccc--------cccc--ceEEEeee
Confidence 678888988766544433 567889999999987665542 378899999854 1100 01111122
Q ss_pred cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC------cccceeEecCCCEEEEEecCCC
Q 039497 433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW------IDTMPSWSPKGDLIAFSSNRHN 506 (642)
Q Consensus 433 ~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~------~~~~~~~spdG~~l~~~~~~~~ 506 (642)
+. ..+..+.|+|||++|+..+.+ ..|.+||+.+++. ...+..+.. ......|+|++..++.......
T Consensus 295 h~-~~v~~~~~spdg~~l~s~~~D---~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 367 (435)
T 4e54_B 295 HR-HPVNAACFSPDGARLLTTDQK---SEIRVYSASQWDC---PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDP 367 (435)
T ss_dssp CS-SCEEECCBCTTSSEEEEEESS---SCEEEEESSSSSS---EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCT
T ss_pred cc-ccccceeECCCCCeeEEEcCC---CEEEEEECCCCcc---ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCC
Confidence 33 567788999999999887743 4799999988875 344432211 1234588999988877754321
Q ss_pred CC----CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccce-EEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCc
Q 039497 507 PD----NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV-CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGD 581 (642)
Q Consensus 507 ~~----~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (642)
.. ......|.+||..+++........+.. .+..+ .|||||+.|+..+ ++ .
T Consensus 368 ~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~-------~v~s~~~fspdg~~lasg~-d~-----------------~ 422 (435)
T 4e54_B 368 NFKSCTPYELRTIDVFDGNSGKMMCQLYDPESS-------GISSLNEFNPMGDTLASAM-GY-----------------H 422 (435)
T ss_dssp TSCCSSTTCCCCEEEECSSSCCEEEEECCSSCC-------CCCCEEEECTTSSCEEEEC-SS-----------------E
T ss_pred CeEEEEecCCCEEEEEECCCCcEEEEEeCCCCC-------cEEEEEEECCCCCEEEEEc-CC-----------------c
Confidence 10 012245899999888765443323332 34455 6999999887543 32 6
Q ss_pred EEEEEcCCCcee
Q 039497 582 LYVVKLDGSGLR 593 (642)
Q Consensus 582 l~~~~~~~~~~~ 593 (642)
|.+|++..++.+
T Consensus 423 i~iW~~~~gk~r 434 (435)
T 4e54_B 423 ILIWSQQEARTR 434 (435)
T ss_dssp EEECCCC-----
T ss_pred EEEEECCcCeee
Confidence 888888876654
No 111
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.68 E-value=2e-14 Score=149.21 Aligned_cols=264 Identities=13% Similarity=0.118 Sum_probs=176.7
Q ss_pred ceEEEEccCCceEecccC--CCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---c
Q 039497 121 ALYSTDLKASKFTRLTPY--GVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---W 195 (642)
Q Consensus 121 ~l~~~~~~~~~~~~lt~~--~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---~ 195 (642)
.|+++++.+++...+... .......+|||||++||....++ .|.+|++.+++..+....+.. .
T Consensus 114 ~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg------------~i~iwd~~~~~~~~~~~~~~~~v~~ 181 (401)
T 4aez_A 114 NVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNG------------LVDIYDVESQTKLRTMAGHQARVGC 181 (401)
T ss_dssp EEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTS------------CEEEEETTTCCEEEEECCCSSCEEE
T ss_pred eEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCC------------eEEEEECcCCeEEEEecCCCCceEE
Confidence 577779998887665543 44456789999999999987655 799999998876555543332 3
Q ss_pred ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEE
Q 039497 196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD 275 (642)
Q Consensus 196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d 275 (642)
..| ++.++++. ..+|...+ +++..... ....+..+...+..++|+|+|++|+....++ .+.+||
T Consensus 182 ~~~--~~~~l~~~-~~dg~i~i--~d~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-----~v~iwd 245 (401)
T 4aez_A 182 LSW--NRHVLSSG-SRSGAIHH--HDVRIANH------QIGTLQGHSSEVCGLAWRSDGLQLASGGNDN-----VVQIWD 245 (401)
T ss_dssp EEE--ETTEEEEE-ETTSEEEE--EETTSSSC------EEEEEECCSSCEEEEEECTTSSEEEEEETTS-----CEEEEE
T ss_pred EEE--CCCEEEEE-cCCCCEEE--EecccCcc------eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC-----eEEEcc
Confidence 466 55677766 45774444 45542210 4455666666788899999999998866544 788998
Q ss_pred eecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCcee
Q 039497 276 LTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG 355 (642)
Q Consensus 276 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 355 (642)
+... +.+... .. .......+.|+|++..++..........
T Consensus 246 ~~~~--------------~~~~~~-------------------~~-------~~~~v~~~~~~p~~~~ll~~~~gs~d~~ 285 (401)
T 4aez_A 246 ARSS--------------IPKFTK-------------------TN-------HNAAVKAVAWCPWQSNLLATGGGTMDKQ 285 (401)
T ss_dssp TTCS--------------SEEEEE-------------------CC-------CSSCCCEEEECTTSTTEEEEECCTTTCE
T ss_pred CCCC--------------CccEEe-------------------cC-------CcceEEEEEECCCCCCEEEEecCCCCCE
Confidence 7321 111000 00 0111235689999887777653234678
Q ss_pred EEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC
Q 039497 356 IKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE 434 (642)
Q Consensus 356 l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 434 (642)
|.++|+.+++...... ...+..+.|+|+++.|+.+.. ..++.+.+|++.. +... ....+..+.
T Consensus 286 i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g-----~~dg~i~v~~~~~--------~~~~---~~~~~~~h~ 349 (401)
T 4aez_A 286 IHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHG-----FPDNNLSIWSYSS--------SGLT---KQVDIPAHD 349 (401)
T ss_dssp EEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEEC-----TTTCEEEEEEEET--------TEEE---EEEEEECCS
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEee-----cCCCcEEEEecCC--------ccce---eEEEecCCC
Confidence 9999998877655444 667889999999999988752 2378999999875 1210 222234444
Q ss_pred CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcc
Q 039497 435 TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472 (642)
Q Consensus 435 ~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~ 472 (642)
..+..+.|+|||++|+..+. +..|.+|++.+++.
T Consensus 350 -~~v~~~~~s~dg~~l~s~~~---dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 350 -TRVLYSALSPDGRILSTAAS---DENLKFWRVYDGDH 383 (401)
T ss_dssp -SCCCEEEECTTSSEEEEECT---TSEEEEEECCC---
T ss_pred -CCEEEEEECCCCCEEEEEeC---CCcEEEEECCCCcc
Confidence 67788999999999887763 34899999988774
No 112
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.68 E-value=2e-14 Score=151.25 Aligned_cols=148 Identities=13% Similarity=0.166 Sum_probs=99.6
Q ss_pred CccEEcCCC-CEEEEEecCCCceeEEEEECCCCCe-----eEEee-cC------------CceeeeeecCCCEEEEEEcC
Q 039497 333 SFPSFSPDG-GLIVFNHDFELNAGIKIAKSDGSKR-----WTLIK-DR------------TAFYNSWSPTEKHVIYTSTG 393 (642)
Q Consensus 333 ~~~~~spdg-~~l~~~~~~~~~~~l~~~d~~~~~~-----~~l~~-~~------------~~~~~~~spdg~~l~~~~~~ 393 (642)
..+.|+|+| +.|+.... ...|.++|+..++. ..+.. .. .+..+.|+|+|+.|+..+
T Consensus 230 ~~~~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-- 304 (447)
T 3dw8_B 230 TAAEFHPNSCNTFVYSSS---KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-- 304 (447)
T ss_dssp EEEEECSSCTTEEEEEET---TSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE--
T ss_pred EEEEECCCCCcEEEEEeC---CCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee--
Confidence 356899999 87777654 35788889888764 23322 22 788999999999988776
Q ss_pred CCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCC---------------ccCcEECCCCCeEEEEeCCCC
Q 039497 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGN---------------NAFPSCSPDGKFLVFRSGRSG 458 (642)
Q Consensus 394 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------~~~~~~SpDg~~l~~~~~~~g 458 (642)
.+.+++|++.. . +. ....+..+. .. ...+.|+|||++|+..+.
T Consensus 305 ------~~~v~iwd~~~--~------~~----~~~~~~~~~-~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~--- 362 (447)
T 3dw8_B 305 ------YLSVKVWDLNM--E------NR----PVETYQVHE-YLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSY--- 362 (447)
T ss_dssp ------SSEEEEEETTC--C------SS----CSCCEESCG-GGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECS---
T ss_pred ------CCeEEEEeCCC--C------cc----ccceeeccc-cccccccccccccccccceEEEECCCCCEEEEecc---
Confidence 37899999854 1 21 222232222 11 123799999999976653
Q ss_pred ceeEEEEECCCCccccceeeCCC---------------------------------CCCcccceeEecCCCEEEEEecCC
Q 039497 459 HKNLFVLDAVNGEFNGDIRQLTD---------------------------------GPWIDTMPSWSPKGDLIAFSSNRH 505 (642)
Q Consensus 459 ~~~l~~~d~~~g~~~~~~~~l~~---------------------------------~~~~~~~~~~spdG~~l~~~~~~~ 505 (642)
+..|++||+.+++. ..+.. ....+..++|+|+|+.|++.+.+.
T Consensus 363 dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~ 438 (447)
T 3dw8_B 363 NNFFRMFDRNTKRD----ITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN 438 (447)
T ss_dssp TTEEEEEETTTCCE----EEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC
T ss_pred CCEEEEEEcCCCcc----eeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce
Confidence 34899999998874 22211 112345689999999999887765
Q ss_pred CCCCCCceeEEEEeC
Q 039497 506 NPDNVEAFSLYVIKP 520 (642)
Q Consensus 506 ~~~~~~~~~l~~~d~ 520 (642)
+|+|..
T Consensus 439 ---------~~~~~~ 444 (447)
T 3dw8_B 439 ---------LYIFQD 444 (447)
T ss_dssp ---------EEEEEC
T ss_pred ---------eeeecc
Confidence 888864
No 113
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.68 E-value=6.6e-15 Score=148.70 Aligned_cols=286 Identities=16% Similarity=0.121 Sum_probs=179.2
Q ss_pred eeCCCCCccccceeecC-CcEEEEEEeccCCceeeEEEEEeec-------------CCCCcccCCeecCCCCEEEEEEee
Q 039497 237 RVTPPGVHCFTPAAFHD-GKRLAVATRRKNRNFRHIEIYDLTL-------------NPNFHHYNPFVSANSEFIGYHRFR 302 (642)
Q Consensus 237 ~l~~~~~~~~~~~~Spd-G~~l~~~~~~~~~~~~~i~~~d~~~-------------~~~~~~~~~~~spDg~~l~~~~~~ 302 (642)
.|.++...+..++|+|+ +++|+....++ .|.+||+.. .+...+....|+|||+.|+....+
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~-----~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d 107 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDK-----TIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD 107 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTS-----CEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCC-----eEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence 46677778899999998 57777755444 899999832 234556778899999998887554
Q ss_pred cCCCCCCcccceEeeccCCCceeEEeeeC--CCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCcee
Q 039497 303 GESTEGQSTIPHLEPVASPVKELRMLRLN--GSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFY 377 (642)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~ 377 (642)
+. .. +................ .....++++++.|+.... ...+.++++.......... ...+..
T Consensus 108 ~~------i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~---d~~~~~~d~~~~~~~~~~~~~~~~~v~~ 176 (340)
T 4aow_A 108 GT------LR--LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR---DKTIKLWNTLGVCKYTVQDESHSEWVSC 176 (340)
T ss_dssp SE------EE--EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET---TSCEEEECTTSCEEEEECSSSCSSCEEE
T ss_pred cc------ce--EEeecccceeeeecCCCCceeEEEEeecCccceeecC---CCeEEEEEeCCCceEEEEeccccCcccc
Confidence 43 11 11222111111111111 124467899998877654 3567777877655443332 345677
Q ss_pred eeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCC
Q 039497 378 NSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRS 457 (642)
Q Consensus 378 ~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~ 457 (642)
+.|++++...++++. ..+..+++|++.. .. ....+..+. ..+..++|+|||++|+..+.
T Consensus 177 ~~~~~~~~~~~~~s~-----~~d~~i~i~d~~~--------~~-----~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~-- 235 (340)
T 4aow_A 177 VRFSPNSSNPIIVSC-----GWDKLVKVWNLAN--------CK-----LKTNHIGHT-GYLNTVTVSPDGSLCASGGK-- 235 (340)
T ss_dssp EEECSCSSSCEEEEE-----ETTSCEEEEETTT--------TE-----EEEEECCCS-SCEEEEEECTTSSEEEEEET--
T ss_pred eEEccCCCCcEEEEE-----cCCCEEEEEECCC--------Cc-----eeeEecCCC-CcEEEEEECCCCCEEEEEeC--
Confidence 889888654333221 2367888998754 12 344455454 67788999999999887764
Q ss_pred CceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCC-CC
Q 039497 458 GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE-GS 536 (642)
Q Consensus 458 g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~-~~ 536 (642)
+..|.+||+.+++. +..+.. ...+..+.|+|++..++... ++ .|++||+.++........... ..
T Consensus 236 -Dg~i~iwd~~~~~~---~~~~~~-~~~v~~~~~~~~~~~~~~~~-d~--------~i~iwd~~~~~~~~~~~~~~~~~~ 301 (340)
T 4aow_A 236 -DGQAMLWDLNEGKH---LYTLDG-GDIINALCFSPNRYWLCAAT-GP--------SIKIWDLEGKIIVDELKQEVISTS 301 (340)
T ss_dssp -TCEEEEEETTTTEE---EEEEEC-SSCEEEEEECSSSSEEEEEE-TT--------EEEEEETTTTEEEEEECCC-----
T ss_pred -CCeEEEEEeccCce---eeeecC-CceEEeeecCCCCceeeccC-CC--------EEEEEECCCCeEEEeccccceeee
Confidence 34899999998875 444443 34567789999987665544 33 299999987654322211000 00
Q ss_pred CCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497 537 GDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590 (642)
Q Consensus 537 ~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 590 (642)
.......+..++|+|||++|+..+.++ .|.+|++.+|
T Consensus 302 ~~~h~~~v~~l~~s~dg~~l~sgs~Dg-----------------~v~iW~~~tG 338 (340)
T 4aow_A 302 SKAEPPQCTSLAWSADGQTLFAGYTDN-----------------LVRVWQVTIG 338 (340)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEETTS-----------------CEEEEEEEC-
T ss_pred ccCCCCCEEEEEECCCCCEEEEEeCCC-----------------EEEEEeCCCc
Confidence 001112577899999999998877664 6777777665
No 114
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.9e-15 Score=161.30 Aligned_cols=323 Identities=10% Similarity=-0.003 Sum_probs=174.5
Q ss_pred EeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecC------CcEEEEEEeccCCceeeE
Q 039497 198 WSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHD------GKRLAVATRRKNRNFRHI 271 (642)
Q Consensus 198 wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Spd------G~~l~~~~~~~~~~~~~i 271 (642)
++|++.++++. ..++..+||.++...... .....+..+...+..++|+|+ +..|+.+..++ .|
T Consensus 169 ~~~~~~~laS~-s~D~tI~iWd~~~~~~~~-----~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dg-----tv 237 (524)
T 2j04_B 169 LNEHLEMFDKE-KHSSCIQIFKMNTSTLHC-----VKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEG-----TI 237 (524)
T ss_dssp --------------CEEEEEEEEETTTCCE-----EEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTS-----CE
T ss_pred cchhhhhhccC-CCCceEEEEEccCCCCCc-----eEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCC-----eE
Confidence 36888777665 567877888765432100 001123334445777889986 56788765544 89
Q ss_pred EEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCC
Q 039497 272 EIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFE 351 (642)
Q Consensus 272 ~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 351 (642)
++||+........ . .+. . .. .. ..+.... .....++|++++ .|+..+.
T Consensus 238 rlWd~~~~~~~~~----------~-~~~-~-~~------p~---~~l~~h~-------~~v~sv~~s~~~-~lasgs~-- 285 (524)
T 2j04_B 238 NFLEIIDNATDVH----------V-FKM-C-EK------PS---LTLSLAD-------SLITTFDFLSPT-TVVCGFK-- 285 (524)
T ss_dssp EEEECCCCSSSSS----------E-EEC-C-CS------CS---EEECCTT-------TCEEEEEESSSS-EEEEEET--
T ss_pred EEEEcCCCccccc----------c-cee-e-cC------ce---EEEEcCC-------CCEEEEEecCCC-eEEEEeC--
Confidence 9999843211000 0 000 0 00 00 0000000 011245788865 5665543
Q ss_pred CceeEEEEECCCCC-eeE-Eee-cCCceee--eeecCC-CEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCcccc
Q 039497 352 LNAGIKIAKSDGSK-RWT-LIK-DRTAFYN--SWSPTE-KHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPC 425 (642)
Q Consensus 352 ~~~~l~~~d~~~~~-~~~-l~~-~~~~~~~--~~spdg-~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 425 (642)
...|.++|+.++. ... +.. ...+..+ .|+|+| +.|+.++. ++.++||++.. ..
T Consensus 286 -DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~-------D~tvklWD~~~--------~~----- 344 (524)
T 2j04_B 286 -NGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV-------DGYFYIFNPKD--------IA----- 344 (524)
T ss_dssp -TSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEET-------TSEEEEECGGG--------HH-----
T ss_pred -CCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEecc-------CCeEEEEECCC--------CC-----
Confidence 4678888988653 222 222 5667777 678998 66776663 78999999854 11
Q ss_pred ceEEccccCC-CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecC
Q 039497 426 DVKILTKEET-GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504 (642)
Q Consensus 426 ~~~~l~~~~~-~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~ 504 (642)
....+..... ..+..++|+||++.|+..+. ...|.+||+.++.. +..+..+...+..++|||+|+.|+..+.+
T Consensus 345 ~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~---d~tv~lwd~~~~~~---~~~l~gH~~~V~sva~Sp~g~~l~Sgs~D 418 (524)
T 2j04_B 345 TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDG---ASSLRAVPSRAAFA---VHPLVSRETTITAIGVSRLHPMVLAGSAD 418 (524)
T ss_dssp HHCEEEEECSCCSCCCEEEETTTTEEEEECS---SSEEEEEETTCTTC---CEEEEECSSCEEEEECCSSCCBCEEEETT
T ss_pred cccccccccccCcccceEeCCCcCeEEEeCC---CCcEEEEECccccc---ceeeecCCCceEEEEeCCCCCeEEEEECC
Confidence 2222322221 23567899999998776653 33799999988875 46676777788999999999998888776
Q ss_pred CCCCCCCceeEEEEeCCCCceEEeeecC-CCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEE
Q 039497 505 HNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLY 583 (642)
Q Consensus 505 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 583 (642)
+. |.+||+..+......... ... ...+..++|||||+.+.+ .+ .. .++
T Consensus 419 gt--------v~lwd~~~~~~~~~~~~~~~~~-----~~~v~~v~~sp~g~~~~~--~~-~~---------------~~~ 467 (524)
T 2j04_B 419 GS--------LIITNAARRLLHGIKNSSATQK-----SLRLWKWDYSIKDDKYRI--DS-SY---------------EVY 467 (524)
T ss_dssp TE--------EECCBSCSSTTTCC------CC-----CCEEEECBCCSSSCEEEE--CC-CC---------------CCC
T ss_pred CE--------EEEEechHhhccccccCcccee-----eeEEEEeccCCCCCeEEc--cC-Cc---------------eec
Confidence 64 888998654221111000 000 002457889999995532 22 11 455
Q ss_pred EEEcCCCceeeccCCCCCCCCcEEecCCc---eEEeecCCC
Q 039497 584 VVKLDGSGLRRLTWNGYENGTPAWHPGNQ---LDLGKLRLE 621 (642)
Q Consensus 584 ~~~~~~~~~~~lt~~~~~~~~~~~s~dg~---~~~~~~~~~ 621 (642)
.+...+..+..|..+...+..++|+|+++ ++++....|
T Consensus 468 ~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g 508 (524)
T 2j04_B 468 PLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAG 508 (524)
T ss_dssp C-------------CCCSCCCEEECCSTTTTTEEEEECTTS
T ss_pred ccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCc
Confidence 55555666777888888889999999964 666654433
No 115
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.67 E-value=2.5e-14 Score=147.30 Aligned_cols=289 Identities=14% Similarity=0.100 Sum_probs=175.9
Q ss_pred ceEeeCC-eEEEEEecCCCceEEEEEecCCCcccccCCccceeeC--CCCCccccceeec-CCcEEEEEEeccCCceeeE
Q 039497 196 PTWSGDS-TIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVT--PPGVHCFTPAAFH-DGKRLAVATRRKNRNFRHI 271 (642)
Q Consensus 196 ~~wspdg-~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~Sp-dG~~l~~~~~~~~~~~~~i 271 (642)
++|+|++ .++++. ..+|...|| +..++. ....+. .+...+..++|+| ++++|+....++ .+
T Consensus 79 ~~~~~~~~~~l~s~-~~dg~i~iw--d~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~-----~i 143 (383)
T 3ei3_B 79 LEWHPTHPTTVAVG-SKGGDIILW--DYDVQN-------KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG-----AT 143 (383)
T ss_dssp EEECSSCTTEEEEE-EBTSCEEEE--ETTSTT-------CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT-----EE
T ss_pred EEECCCCCCEEEEE-cCCCeEEEE--eCCCcc-------cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC-----EE
Confidence 6999999 788877 457755555 555542 233333 3556788899999 677777755443 78
Q ss_pred EEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCC
Q 039497 272 EIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFE 351 (642)
Q Consensus 272 ~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 351 (642)
.+||+.. +.+.... ....... ....+.|+|+++.|+....
T Consensus 144 ~iwd~~~---------------~~~~~~~----------------~~~~~~~-------~v~~~~~~~~~~~l~~~~~-- 183 (383)
T 3ei3_B 144 TLRDFSG---------------SVIQVFA----------------KTDSWDY-------WYCCVDVSVSRQMLATGDS-- 183 (383)
T ss_dssp EEEETTS---------------CEEEEEE----------------CCCCSSC-------CEEEEEEETTTTEEEEEET--
T ss_pred EEEECCC---------------CceEEEe----------------ccCCCCC-------CeEEEEECCCCCEEEEECC--
Confidence 8888721 1111110 0000000 1124589999998887654
Q ss_pred CceeEEEEECCCCCeeEEee-cCCceeeeeecCCC-EEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE
Q 039497 352 LNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEK-HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI 429 (642)
Q Consensus 352 ~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 429 (642)
...|.++|+.+.....+.. ...+..+.|+|+++ .|+..+ .++.+++|++..... .+ . ....
T Consensus 184 -d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-------~d~~i~iwd~~~~~~-----~~-~---~~~~ 246 (383)
T 3ei3_B 184 -TGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSS-------VDATVKLWDLRNIKD-----KN-S---YIAE 246 (383)
T ss_dssp -TSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEE-------TTSEEEEEEGGGCCS-----TT-C---EEEE
T ss_pred -CCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEe-------CCCEEEEEeCCCCCc-----cc-c---eEEE
Confidence 3688899986555444443 66788999999999 565555 378999999865100 01 0 2222
Q ss_pred ccccCCCCccCcEECC-CCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC------CcccceeEecCCCEEEEEe
Q 039497 430 LTKEETGNNAFPSCSP-DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP------WIDTMPSWSPKGDLIAFSS 502 (642)
Q Consensus 430 l~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~------~~~~~~~~spdG~~l~~~~ 502 (642)
+ .+. ..+..+.|+| ||++|+..+. +..|.+||+.+++. +..+..+. .......|+|++..+++..
T Consensus 247 ~-~~~-~~v~~~~~s~~~~~~l~~~~~---d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 318 (383)
T 3ei3_B 247 M-PHE-KPVNAAYFNPTDSTKLLTTDQ---RNEIRVYSSYDWSK---PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGR 318 (383)
T ss_dssp E-ECS-SCEEEEEECTTTSCEEEEEES---SSEEEEEETTBTTS---CSEEEECCBCCCTTSCCCCCEECSSSSEEEEEC
T ss_pred e-cCC-CceEEEEEcCCCCCEEEEEcC---CCcEEEEECCCCcc---ccccccccccccccccceEEeccCCCCceEEEe
Confidence 3 344 6788899999 9999988774 34899999988775 33332111 1112246777776665443
Q ss_pred cCCCC-CCCCceeEEEEeCCCCceEEeeec-CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCC
Q 039497 503 NRHNP-DNVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYG 580 (642)
Q Consensus 503 ~~~~~-~~~~~~~l~~~d~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 580 (642)
..... -......|++||+.+++....... .... .+..+.|+|||+.|+..+ ++
T Consensus 319 s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~-------~~~~~~~s~~g~~l~s~s-d~----------------- 373 (383)
T 3ei3_B 319 YPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAG-------IISLNKFSPTGDVLASGM-GF----------------- 373 (383)
T ss_dssp BCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCS-------CCCEEEECTTSSEEEEEE-TT-----------------
T ss_pred cCCcccccCCCCeEEEEecCCCceeeeecCCCCCc-------eEEEEEEecCccEEEEec-CC-----------------
Confidence 21000 000223499999988776443321 1222 345669999999887775 43
Q ss_pred cEEEEEcCC
Q 039497 581 DLYVVKLDG 589 (642)
Q Consensus 581 ~l~~~~~~~ 589 (642)
.|.+|++++
T Consensus 374 ~i~iw~~~~ 382 (383)
T 3ei3_B 374 NILIWNRED 382 (383)
T ss_dssp EEEEEECC-
T ss_pred cEEEEecCC
Confidence 688888754
No 116
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.67 E-value=1.4e-13 Score=145.64 Aligned_cols=322 Identities=11% Similarity=0.118 Sum_probs=201.0
Q ss_pred eeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---cceEeeCCeEEEEEecCCCceEEEEEec
Q 039497 146 SVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---WPTWSGDSTIYFHRQADDGWWSIFRVSF 222 (642)
Q Consensus 146 ~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---~~~wspdg~~~~~~~~~~g~~~l~~~~~ 222 (642)
.+++++++||....++ .|.+|++.+++.......+.. .+.|+|++ ++++. ..+|...+| ++
T Consensus 127 ~~~~~~~~l~sgs~dg------------~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~-s~dg~i~vw--d~ 190 (464)
T 3v7d_B 127 CLQFEDNYVITGADDK------------MIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSG-STDRTVRVW--DI 190 (464)
T ss_dssp EEEEETTEEEEEETTS------------CEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEE-ETTSCEEEE--ET
T ss_pred EEEECCCEEEEEcCCC------------cEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEE-eCCCCEEEE--EC
Confidence 4677899999887766 799999998876555443332 35899998 55555 567855554 55
Q ss_pred CCCcccccCCccceeeCCCCCccccceee--cCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEE
Q 039497 223 PENLEFLGFPIAPTRVTPPGVHCFTPAAF--HDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHR 300 (642)
Q Consensus 223 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~S--pdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~ 300 (642)
.++. ....+..+...+..++++ +++++|+....++ .+.+||+.......... ...+.. +.+..
T Consensus 191 ~~~~-------~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~-----~i~vwd~~~~~~~~~~~--~~~~~~-~~~~~ 255 (464)
T 3v7d_B 191 KKGC-------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN-----TLHVWKLPKESSVPDHG--EEHDYP-LVFHT 255 (464)
T ss_dssp TTTE-------EEEEECCCSSCEEEEEEEESSSCEEEEEEETTS-----CEEEEECCCCCCC--------CCSS-EEESC
T ss_pred CCCc-------EEEEECCCCCccEEEEEecCCCCCEEEEEcCCC-----cEEEeeCCCCccccccc--ccCCcc-eEeec
Confidence 6653 445556566667777776 6888888865544 89999984332111000 000000 00000
Q ss_pred eecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceee
Q 039497 301 FRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYN 378 (642)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~ 378 (642)
.... ...... ..........++++++.++.... ...|.++|+.+++...... ...+..+
T Consensus 256 ~~~~-------~~~~~~---------~~~~~~~v~~~~~~~~~l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 316 (464)
T 3v7d_B 256 PEEN-------PYFVGV---------LRGHMASVRTVSGHGNIVVSGSY---DNTLIVWDVAQMKCLYILSGHTDRIYST 316 (464)
T ss_dssp GGGC-------TTEEEE---------ECCCSSCEEEEEEETTEEEEEET---TSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred cCCC-------eEEEEE---------ccCccceEEEEcCCCCEEEEEeC---CCeEEEEECCCCcEEEEecCCCCCEEEE
Confidence 0000 000000 11111123356888998888664 3678889998776544433 5668899
Q ss_pred eeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCC
Q 039497 379 SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG 458 (642)
Q Consensus 379 ~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g 458 (642)
.|+|+++.|+..+. ++.+++|++.. +. ....+..+. ..+..+.|+ +++|+..+.
T Consensus 317 ~~~~~~~~l~sg~~-------dg~i~vwd~~~--------~~-----~~~~~~~h~-~~v~~~~~~--~~~l~s~s~--- 370 (464)
T 3v7d_B 317 IYDHERKRCISASM-------DTTIRIWDLEN--------GE-----LMYTLQGHT-ALVGLLRLS--DKFLVSAAA--- 370 (464)
T ss_dssp EEETTTTEEEEEET-------TSCEEEEETTT--------TE-----EEEEECCCS-SCEEEEEEC--SSEEEEEET---
T ss_pred EEcCCCCEEEEEeC-------CCcEEEEECCC--------Cc-----EEEEEeCCC-CcEEEEEEc--CCEEEEEeC---
Confidence 99999999988774 68899999854 22 455555555 667777776 567777663
Q ss_pred ceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCC
Q 039497 459 HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGD 538 (642)
Q Consensus 459 ~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 538 (642)
+..|.+||+.+++. .... ..........|+|+|++|+..+ ++ .|.+||+.+++...........
T Consensus 371 dg~v~vwd~~~~~~---~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg--------~i~iwd~~~g~~~~~~~~~~~~--- 434 (464)
T 3v7d_B 371 DGSIRGWDANDYSR---KFSY-HHTNLSAITTFYVSDNILVSGS-EN--------QFNIYNLRSGKLVHANILKDAD--- 434 (464)
T ss_dssp TSEEEEEETTTCCE---EEEE-ECTTCCCEEEEEECSSEEEEEE-TT--------EEEEEETTTCCEEESCTTTTCS---
T ss_pred CCcEEEEECCCCce---eeee-cCCCCccEEEEEeCCCEEEEec-CC--------eEEEEECCCCcEEehhhccCCC---
Confidence 34799999998764 2222 2334456679999999888777 33 2999999988765432223333
Q ss_pred cccccccceEEcCCCCEEEEEEecCCc
Q 039497 539 VDRERINHVCFSADGEWLLFTANLGAV 565 (642)
Q Consensus 539 ~~~~~~~~~~~S~Dg~~l~~~~~~~~~ 565 (642)
.+..+.|+ ++.++++..+++.
T Consensus 435 ----~v~~v~~~--~~~l~~~~~~~g~ 455 (464)
T 3v7d_B 435 ----QIWSVNFK--GKTLVAAVEKDGQ 455 (464)
T ss_dssp ----EEEEEEEE--TTEEEEEEEETTE
T ss_pred ----cEEEEEec--CCEEEEEEEeCCe
Confidence 56778885 6777777666543
No 117
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.66 E-value=3.4e-14 Score=149.43 Aligned_cols=321 Identities=9% Similarity=0.118 Sum_probs=176.3
Q ss_pred cceEeeCCeEEEEEecCCCceEEEEEecCCCccc--ccCCccceeeCCCC------------CccccceeecCC--cEEE
Q 039497 195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEF--LGFPIAPTRVTPPG------------VHCFTPAAFHDG--KRLA 258 (642)
Q Consensus 195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~--~~~~~~~~~l~~~~------------~~~~~~~~SpdG--~~l~ 258 (642)
.++|+|||.++++. ..+|...||.+........ .........+..+. ..+..++|+|++ ..|+
T Consensus 33 ~v~~s~~g~~la~g-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~ 111 (447)
T 3dw8_B 33 TVEFNHSGELLATG-DKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFL 111 (447)
T ss_dssp EEEECSSSSEEEEE-ETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEE
T ss_pred EEEECCCCCEEEEE-cCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEE
Confidence 36999999888887 5678666666543220000 00000123444554 568889999998 7788
Q ss_pred EEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC--CCcee-EE---eeeCC
Q 039497 259 VATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS--PVKEL-RM---LRLNG 332 (642)
Q Consensus 259 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~---~~~~~ 332 (642)
....++ .+.+||+...............+|...... .. .......+..... ..... .. .....
T Consensus 112 s~s~d~-----~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 180 (447)
T 3dw8_B 112 LSTNDK-----TIKLWKISERDKRPEGYNLKEEDGRYRDPT----TV--TTLRVPVFRPMDLMVEASPRRIFANAHTYHI 180 (447)
T ss_dssp EEECSS-----CEEEEEEEEEEEEEECCSCC--------CC----CC--CSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred EeCCCC-----eEEEEecccccCCcceecccCccccccCcc----cc--cceEeccccchheeeeccceEEeccCCCcce
Confidence 765444 899999843110000000000111000000 00 0000000000000 00000 00 01112
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCC-CCeeEEe---------ecCCceeeeeecCC-CEEEEEEcCCCcccCCC
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDG-SKRWTLI---------KDRTAFYNSWSPTE-KHVIYTSTGPIFQSERA 401 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~-~~~~~l~---------~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~ 401 (642)
..+.|+|+|+.|+.. . ...|.++|+.. +....+. ....+..+.|+|++ +.|+..+. ++
T Consensus 181 ~~~~~~~~~~~l~s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-------dg 249 (447)
T 3dw8_B 181 NSISINSDYETYLSA-D---DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS-------KG 249 (447)
T ss_dssp CEEEECTTSSEEEEE-C---SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET-------TS
T ss_pred EEEEEcCCCCEEEEe-C---CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC-------CC
Confidence 467899999988874 2 46788889883 3333321 14558899999999 77777764 78
Q ss_pred eEEEEEEEeecCCCCCCCCCccccceEEccccCC-----------CCccCcEECCCCCeEEEEeCCCCceeEEEEECCC-
Q 039497 402 TVQIARVSFQLDPSDDNNREEIPCDVKILTKEET-----------GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN- 469 (642)
Q Consensus 402 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~- 469 (642)
.+++|++.. +. ........+..+.. ..+..+.|+|||++|+..+. ..|.+||+.+
T Consensus 250 ~i~iwd~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----~~v~iwd~~~~ 316 (447)
T 3dw8_B 250 TIRLCDMRA--------SA-LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY----LSVKVWDLNME 316 (447)
T ss_dssp CEEEEETTT--------CS-SSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES----SEEEEEETTCC
T ss_pred eEEEEECcC--------Cc-cccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC----CeEEEEeCCCC
Confidence 899999865 11 00001344444431 16778999999999987764 4899999986
Q ss_pred CccccceeeCCCCCCc---------------ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCC
Q 039497 470 GEFNGDIRQLTDGPWI---------------DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534 (642)
Q Consensus 470 g~~~~~~~~l~~~~~~---------------~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 534 (642)
++. +..+..+... ...++|+|||++|+..+.++. |++||+.+++...+......
T Consensus 317 ~~~---~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~--------v~iwd~~~~~~~~~~~~~~~ 385 (447)
T 3dw8_B 317 NRP---VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNF--------FRMFDRNTKRDITLEASREN 385 (447)
T ss_dssp SSC---SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTE--------EEEEETTTCCEEEEECCSTT
T ss_pred ccc---cceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCE--------EEEEEcCCCcceeeeecccc
Confidence 554 3444333211 112799999999977776653 99999998876544321100
Q ss_pred CC------------------C-----Ccc-cccccceEEcCCCCEEEEEEec
Q 039497 535 GS------------------G-----DVD-RERINHVCFSADGEWLLFTANL 562 (642)
Q Consensus 535 ~~------------------~-----~~~-~~~~~~~~~S~Dg~~l~~~~~~ 562 (642)
.. . ..+ ...+..++|+|+|..|++.+.+
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~ 437 (447)
T 3dw8_B 386 NKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTN 437 (447)
T ss_dssp CCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSS
T ss_pred cccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecc
Confidence 00 0 000 1145679999999999887654
No 118
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.66 E-value=8.3e-14 Score=140.54 Aligned_cols=287 Identities=13% Similarity=0.059 Sum_probs=178.7
Q ss_pred ecccCCCccCCceeCCC-CcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCce-----eEeecCC---CcceEeeCCeE
Q 039497 134 RLTPYGVVDYSPSVSYS-GKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKR-----VIVCERG---GWPTWSGDSTI 204 (642)
Q Consensus 134 ~lt~~~~~~~~~~~SPD-G~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~l~~~~~---~~~~wspdg~~ 204 (642)
.|..+.......+|||| |++||..+.+. .|.+|++..++.. +....+. ....|+|||++
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~------------~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~ 100 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDK------------TIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQF 100 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTS------------CEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCC------------eEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCE
Confidence 35566777778899998 68898887666 6889998876532 1111122 24599999998
Q ss_pred EEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcc
Q 039497 205 YFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHH 284 (642)
Q Consensus 205 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~ 284 (642)
+++. ..++ .|..++..... ................++++++.|+....++ .+.+||+...
T Consensus 101 l~s~-~~d~--~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~-----~~~~~d~~~~----- 160 (340)
T 4aow_A 101 ALSG-SWDG--TLRLWDLTTGT-------TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK-----TIKLWNTLGV----- 160 (340)
T ss_dssp EEEE-ETTS--EEEEEETTTTE-------EEEEEECCSSCEEEEEECTTSSCEEEEETTS-----CEEEECTTSC-----
T ss_pred EEEE-cccc--cceEEeecccc-------eeeeecCCCCceeEEEEeecCccceeecCCC-----eEEEEEeCCC-----
Confidence 8887 5567 45555555542 2233333333455566788999888755443 6677765110
Q ss_pred cCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCC
Q 039497 285 YNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGS 364 (642)
Q Consensus 285 ~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~ 364 (642)
.... .........+ ....|++++...+++.. .....|.++++..+
T Consensus 161 ----------~~~~-----------------~~~~~~~~~v-------~~~~~~~~~~~~~~~s~-~~d~~i~i~d~~~~ 205 (340)
T 4aow_A 161 ----------CKYT-----------------VQDESHSEWV-------SCVRFSPNSSNPIIVSC-GWDKLVKVWNLANC 205 (340)
T ss_dssp ----------EEEE-----------------ECSSSCSSCE-------EEEEECSCSSSCEEEEE-ETTSCEEEEETTTT
T ss_pred ----------ceEE-----------------EEeccccCcc-------cceEEccCCCCcEEEEE-cCCCEEEEEECCCC
Confidence 0000 0000000111 12356766543222211 22356888898887
Q ss_pred CeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcE
Q 039497 365 KRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPS 442 (642)
Q Consensus 365 ~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 442 (642)
+...... ...+..+.|+||++.|+..+. ++.+.+|++.. .. ....+... ..+..+.
T Consensus 206 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-------Dg~i~iwd~~~--------~~-----~~~~~~~~--~~v~~~~ 263 (340)
T 4aow_A 206 KLKTNHIGHTGYLNTVTVSPDGSLCASGGK-------DGQAMLWDLNE--------GK-----HLYTLDGG--DIINALC 263 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEET-------TCEEEEEETTT--------TE-----EEEEEECS--SCEEEEE
T ss_pred ceeeEecCCCCcEEEEEECCCCCEEEEEeC-------CCeEEEEEecc--------Cc-----eeeeecCC--ceEEeee
Confidence 6554443 556889999999999888764 78899998754 11 33333332 4667789
Q ss_pred ECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC---------CCCCcccceeEecCCCEEEEEecCCCCCCCCce
Q 039497 443 CSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT---------DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF 513 (642)
Q Consensus 443 ~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~---------~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~ 513 (642)
|+|++..++...+ ..|.+||+.++.. +..+. .+...+..++|+|||++|+..+.++.
T Consensus 264 ~~~~~~~~~~~~d----~~i~iwd~~~~~~---~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~------- 329 (340)
T 4aow_A 264 FSPNRYWLCAATG----PSIKIWDLEGKII---VDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL------- 329 (340)
T ss_dssp ECSSSSEEEEEET----TEEEEEETTTTEE---EEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSC-------
T ss_pred cCCCCceeeccCC----CEEEEEECCCCeE---EEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCE-------
Confidence 9999876655442 3789999987654 23222 23445677899999999988887765
Q ss_pred eEEEEeCCCCc
Q 039497 514 SLYVIKPDGSG 524 (642)
Q Consensus 514 ~l~~~d~~~~~ 524 (642)
|++||+.+|.
T Consensus 330 -v~iW~~~tGt 339 (340)
T 4aow_A 330 -VRVWQVTIGT 339 (340)
T ss_dssp -EEEEEEEC--
T ss_pred -EEEEeCCCcC
Confidence 9999998764
No 119
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.66 E-value=1.9e-15 Score=155.31 Aligned_cols=231 Identities=13% Similarity=0.133 Sum_probs=154.7
Q ss_pred CCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEe--e--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497 332 GSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLI--K--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR 407 (642)
Q Consensus 332 ~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~--~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~ 407 (642)
...+.|+|||++|+.... ...|.++++.++....+. . ...+..+.|+|+++.|+..+. ++.+++|+
T Consensus 14 v~~~~~s~~g~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-------d~~v~vwd 83 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTA---TNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQ-------DRNAYVYE 83 (377)
T ss_dssp CSCCEECSSSSEEECCCS---SSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEET-------TSSEEEC-
T ss_pred EEEEEECCCCCEEEEecC---CCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeC-------CCeEEEEE
Confidence 356799999998877533 356666677665322221 1 556889999999999988874 68899999
Q ss_pred EEeecCCCCCCCC-CccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCc
Q 039497 408 VSFQLDPSDDNNR-EEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWI 485 (642)
Q Consensus 408 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~ 485 (642)
+.. . . .. ....+..+. ..+..+.|+|||++|+..+.. ..|.+||+.+++.......+.. +...
T Consensus 84 ~~~--~------~~~~---~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~h~~~ 148 (377)
T 3dwl_C 84 KRP--D------GTWK---QTLVLLRLN-RAATFVRWSPNEDKFAVGSGA---RVISVCYFEQENDWWVSKHLKRPLRST 148 (377)
T ss_dssp -------------CCC---CEEECCCCS-SCEEEEECCTTSSCCEEEESS---SCEEECCC-----CCCCEEECSSCCSC
T ss_pred cCC--C------Ccee---eeeEecccC-CceEEEEECCCCCEEEEEecC---CeEEEEEECCcccceeeeEeecccCCC
Confidence 976 2 1 00 234444454 678889999999999888743 3788889887651001355555 6677
Q ss_pred ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc----------------eEEeeecCCCCCCCcccccccceEE
Q 039497 486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG----------------LRRIHVAGPEGSGDVDRERINHVCF 549 (642)
Q Consensus 486 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~----------------~~~l~~~~~~~~~~~~~~~~~~~~~ 549 (642)
+..++|+|+|++|+..+.++. |++||+..++ .+.+....+.. .+..+.|
T Consensus 149 v~~~~~~~~~~~l~~~~~d~~--------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~v~~~~~ 213 (377)
T 3dwl_C 149 ILSLDWHPNNVLLAAGCADRK--------AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGG-------WVHAVGF 213 (377)
T ss_dssp EEEEEECTTSSEEEEEESSSC--------EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSS-------SEEEEEE
T ss_pred eEEEEEcCCCCEEEEEeCCCE--------EEEEEEEecccCCCccccccccccchhhhhhcccCCc-------eEEEEEE
Confidence 888999999999998887764 8999985332 11222113333 5788999
Q ss_pred cCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-----eeeccCCCCCCCCcEEecCCceEEeecC
Q 039497 550 SADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-----LRRLTWNGYENGTPAWHPGNQLDLGKLR 619 (642)
Q Consensus 550 S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~lt~~~~~~~~~~~s~dg~~~~~~~~ 619 (642)
+|||++|+..+.++ .|.+|++..+. +..+..+...+..++|+|||+++++...
T Consensus 214 sp~~~~l~~~~~d~-----------------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 271 (377)
T 3dwl_C 214 SPSGNALAYAGHDS-----------------SVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYN 271 (377)
T ss_dssp CTTSSCEEEEETTT-----------------EEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESS
T ss_pred CCCCCEEEEEeCCC-----------------cEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcC
Confidence 99999988887654 67777877665 3455566666789999999999887643
No 120
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.66 E-value=1.1e-14 Score=151.23 Aligned_cols=282 Identities=10% Similarity=0.087 Sum_probs=176.1
Q ss_pred cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeec-CCcEEEEEEeccCCceeeEEE
Q 039497 195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFH-DGKRLAVATRRKNRNFRHIEI 273 (642)
Q Consensus 195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp-dG~~l~~~~~~~~~~~~~i~~ 273 (642)
..+++|+...++.....+|...||.++..+.. ......+..+...+..++|+| +++.|+....++ .|.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-----~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg-----~v~v 108 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRV-----DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDC-----TVMV 108 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-----CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTS-----EEEE
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCC-----CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCC-----eEEE
Confidence 45788886544443355675556554322210 002233455666788899999 899888865443 8999
Q ss_pred EEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCC-EEEEEecCCC
Q 039497 274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGG-LIVFNHDFEL 352 (642)
Q Consensus 274 ~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~ 352 (642)
||+........ .......+.........+.|+|+|+ .|+....
T Consensus 109 w~~~~~~~~~~---------------------------------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~--- 152 (402)
T 2aq5_A 109 WEIPDGGLVLP---------------------------------LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC--- 152 (402)
T ss_dssp EECCTTCCSSC---------------------------------BCSCSEEEECCSSCEEEEEECSSBTTEEEEEET---
T ss_pred EEccCCCCccc---------------------------------cCCceEEecCCCCeEEEEEECcCCCCEEEEEcC---
Confidence 99843221000 0000000000001113568999984 5555443
Q ss_pred ceeEEEEECCCCCeeEEe--e--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceE
Q 039497 353 NAGIKIAKSDGSKRWTLI--K--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVK 428 (642)
Q Consensus 353 ~~~l~~~d~~~~~~~~l~--~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 428 (642)
...|.++|+..++..... . ...+..+.|+|||+.|+..+. ++.+++|++.. +. ...
T Consensus 153 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------d~~i~iwd~~~--------~~-----~~~ 212 (402)
T 2aq5_A 153 DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR-------DKRVRVIEPRK--------GT-----VVA 212 (402)
T ss_dssp TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET-------TSEEEEEETTT--------TE-----EEE
T ss_pred CCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec-------CCcEEEEeCCC--------Cc-----eee
Confidence 357888999888765554 2 566889999999999988874 68899998854 12 334
Q ss_pred Ec-cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCC
Q 039497 429 IL-TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP 507 (642)
Q Consensus 429 ~l-~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~ 507 (642)
.+ ..+.......+.|+|||+.|+..........|.+||+.+++.+.....+ .....+..+.|+|||++|++.+....
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~g~~dg- 290 (402)
T 2aq5_A 213 EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVYLCGKGDS- 290 (402)
T ss_dssp EEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEEEEETTCS-
T ss_pred eeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCCCceeEEEEcCCCCEEEEEEcCCC-
Confidence 44 3333123677899999998877644345669999999876531001112 23445778899999999988775332
Q ss_pred CCCCceeEEEEeCCCCc--eEEeeecCCCCCCCcccccccceEEcCCCCEEE
Q 039497 508 DNVEAFSLYVIKPDGSG--LRRIHVAGPEGSGDVDRERINHVCFSADGEWLL 557 (642)
Q Consensus 508 ~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~ 557 (642)
.|++|++.+++ ...+....... .+..+.|+||+..++
T Consensus 291 ------~i~i~d~~~~~~~~~~l~~~~~~~-------~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 291 ------SIRYFEITSEAPFLHYLSMFSSKE-------SQRGMGYMPKRGLEV 329 (402)
T ss_dssp ------CEEEEEECSSTTCEEEEEEECCSS-------CCSEEEECCGGGSCG
T ss_pred ------eEEEEEecCCCcceEeecccccCC-------cccceEEecccccce
Confidence 29999998877 44454333233 578899999998765
No 121
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.65 E-value=1.1e-13 Score=141.43 Aligned_cols=204 Identities=12% Similarity=0.064 Sum_probs=115.2
Q ss_pred ccEEcCCCCEE-EEEec-------CC----CceeEEEEECC-CCCee-EEee-----cCCceeeeeecCCCEEEEEEcCC
Q 039497 334 FPSFSPDGGLI-VFNHD-------FE----LNAGIKIAKSD-GSKRW-TLIK-----DRTAFYNSWSPTEKHVIYTSTGP 394 (642)
Q Consensus 334 ~~~~spdg~~l-~~~~~-------~~----~~~~l~~~d~~-~~~~~-~l~~-----~~~~~~~~~spdg~~l~~~~~~~ 394 (642)
.+.|+|||++| ++... .. ....+.+++++ .++.. .+.. ...+..+.|+|||++|+++..
T Consensus 87 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~-- 164 (365)
T 1jof_A 87 ANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL-- 164 (365)
T ss_dssp GGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET--
T ss_pred cEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC--
Confidence 46789999863 44432 00 23345555554 23332 2221 345778999999999877763
Q ss_pred CcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc-cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccc
Q 039497 395 IFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK-EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473 (642)
Q Consensus 395 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~ 473 (642)
....+.+|+++. . +... ....+.. .......+++|||||++|++....++...+|.++..+|+..
T Consensus 165 ----~~~~v~~~~~~~--~-----g~~~---~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~ 230 (365)
T 1jof_A 165 ----TANKLWTHRKLA--S-----GEVE---LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPV 230 (365)
T ss_dssp ----TTTEEEEEEECT--T-----SCEE---EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred ----CCCEEEEEEECC--C-----CCEE---EeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEE
Confidence 356788888862 1 1100 1112221 11134677899999999988876555455666666567630
Q ss_pred c---ceeeCCCC-C--C-------ccccee-EecCCCEEEEEecCCCCCCCCceeEEEEeCC-CCceEEeee--cCCCCC
Q 039497 474 G---DIRQLTDG-P--W-------IDTMPS-WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD-GSGLRRIHV--AGPEGS 536 (642)
Q Consensus 474 ~---~~~~l~~~-~--~-------~~~~~~-~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~--~~~~~~ 536 (642)
. .+..+... . . ....++ |||||++|+........ .....|.+|+++ +++.+.+.. .....
T Consensus 231 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~--~~~~~i~v~~~~~~g~~~~~~~~~~~~~~- 307 (365)
T 1jof_A 231 YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF--ELQGYIAGFKLRDCGSIEKQLFLSPTPTS- 307 (365)
T ss_dssp EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST--TSCCEEEEEEECTTSCEEEEEEEEECSSC-
T ss_pred EccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCC--CCCCeEEEEEECCCCCEEEeeeeeecCCC-
Confidence 0 00112211 0 1 245678 99999998766543210 011247778775 566654221 11111
Q ss_pred CCcccccccceEEcC---CCCEEEEEEec
Q 039497 537 GDVDRERINHVCFSA---DGEWLLFTANL 562 (642)
Q Consensus 537 ~~~~~~~~~~~~~S~---Dg~~l~~~~~~ 562 (642)
....++||| ||++|++...+
T Consensus 308 ------~~~~~a~sp~~~dg~~l~v~~~~ 330 (365)
T 1jof_A 308 ------GGHSNAVSPCPWSDEWMAITDDQ 330 (365)
T ss_dssp ------CTTCCCEEECTTCTTEEEEECSS
T ss_pred ------CcccceecCCCcCCCEEEEEEcC
Confidence 246789999 89998877654
No 122
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.65 E-value=5.7e-14 Score=141.93 Aligned_cols=281 Identities=8% Similarity=0.000 Sum_probs=182.4
Q ss_pred CCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCC----ceeEeecCC--CcceEeeCCe-EEEEEec
Q 039497 138 YGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPN----KRVIVCERG--GWPTWSGDST-IYFHRQA 210 (642)
Q Consensus 138 ~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~l~~~~~--~~~~wspdg~-~~~~~~~ 210 (642)
+.......+|||||++||....+. .|.+|++.+++ ...+..... ..++|+|++. ++++. .
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~------------~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~ 76 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDG------------SLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG-T 76 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTS------------EEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEE-E
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCC------------eEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEE-c
Confidence 334456689999999999887655 79999999887 444433322 2469999999 88877 4
Q ss_pred CCCceEEEEEec-CCCcccccCCccceeeCC--CCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCC
Q 039497 211 DDGWWSIFRVSF-PENLEFLGFPIAPTRVTP--PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNP 287 (642)
Q Consensus 211 ~~g~~~l~~~~~-~~~~~~~~~~~~~~~l~~--~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 287 (642)
.+| .|..+++ .++ ....+.. +...+..++|+| ++.|+....++ .+.+||+.......
T Consensus 77 ~dg--~i~~wd~~~~~--------~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~-----~i~iwd~~~~~~~~---- 136 (342)
T 1yfq_A 77 VQG--EILKVDLIGSP--------SFQALTNNEANLGICRICKYG-DDKLIAASWDG-----LIEVIDPRNYGDGV---- 136 (342)
T ss_dssp TTS--CEEEECSSSSS--------SEEECBSCCCCSCEEEEEEET-TTEEEEEETTS-----EEEEECHHHHTTBC----
T ss_pred CCC--eEEEEEeccCC--------ceEeccccCCCCceEEEEeCC-CCEEEEEcCCC-----eEEEEccccccccc----
Confidence 567 5666677 666 5566666 766788899999 88888865544 89999884211000
Q ss_pred eecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCC-CCe
Q 039497 288 FVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG-SKR 366 (642)
Q Consensus 288 ~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~-~~~ 366 (642)
... .+.. . ..+.. ......+.|+|++ ++.... ...|.++++.. ...
T Consensus 137 --------~~~---~~~~------~---~~~~~--------~~~v~~~~~~~~~--l~~~~~---d~~i~i~d~~~~~~~ 183 (342)
T 1yfq_A 137 --------IAV---KNLN------S---NNTKV--------KNKIFTMDTNSSR--LIVGMN---NSQVQWFRLPLCEDD 183 (342)
T ss_dssp --------EEE---EESC------S---SSSSS--------CCCEEEEEECSSE--EEEEES---TTEEEEEESSCCTTC
T ss_pred --------ccc---cCCe------e---eEEee--------CCceEEEEecCCc--EEEEeC---CCeEEEEECCccccc
Confidence 000 0000 0 00000 0111245788877 555433 36788899887 442
Q ss_pred --eEEee--cCCceeeeeec-CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC-------
Q 039497 367 --WTLIK--DRTAFYNSWSP-TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE------- 434 (642)
Q Consensus 367 --~~l~~--~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------- 434 (642)
..... ...+..+.|+| +++.|+..+. ++.+.+|+++. . +..........+..+.
T Consensus 184 ~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-------dg~i~i~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~ 249 (342)
T 1yfq_A 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSI-------DGRVAVEFFDD--Q-----GDDYNSSKRFAFRCHRLNLKDTN 249 (342)
T ss_dssp CCEEEECSCSSCEEEEEECSGGGCEEEEEET-------TSEEEEEECCT--T-----CCSTTCTTCEEEECCCCCTTCCS
T ss_pred cceeeecCCCCceeEEEECCCCCCEEEEEec-------CCcEEEEEEcC--C-----Ccccccccceeeecccccccccc
Confidence 22222 55688999999 9999888874 78899999866 1 0000000334443332
Q ss_pred -CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC-CCcccceeEecCCCEEEEEecCCC
Q 039497 435 -TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG-PWIDTMPSWSPKGDLIAFSSNRHN 506 (642)
Q Consensus 435 -~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~-~~~~~~~~~spdG~~l~~~~~~~~ 506 (642)
...+..+.|+|||++|+..+. ...|++||+.+++. +..+..+ ...+..++ |||++|+..+.++.
T Consensus 250 ~~~~i~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~---~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 250 LAYPVNSIEFSPRHKFLYTAGS---DGIISCWNLQTRKK---IKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp SCCCEEEEEECTTTCCEEEEET---TSCEEEEETTTTEE---EEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred cceeEEEEEEcCCCCEEEEecC---CceEEEEcCccHhH---hhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 126778899999999987774 34799999998886 5666665 56666666 99999999887753
No 123
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.65 E-value=2.7e-14 Score=143.89 Aligned_cols=233 Identities=10% Similarity=0.000 Sum_probs=152.8
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cC------CceeeeeecCCCEEEEEEcCC-----CcccCC
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DR------TAFYNSWSPTEKHVIYTSTGP-----IFQSER 400 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~------~~~~~~~spdg~~l~~~~~~~-----~~~~~~ 400 (642)
..+.|+|||+++++... ....|+++|+.+++...... .. .+..+.|+|||++|+++.... .+...+
T Consensus 37 ~~~~~s~dg~~l~v~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 37 MVPMVAPGGRIAYATVN--KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCEEECTTSSEEEEEET--TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred cceEEcCCCCEEEEEeC--CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 46789999998877663 34679999998887654333 32 577899999999998885210 000024
Q ss_pred CeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC
Q 039497 401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT 480 (642)
Q Consensus 401 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~ 480 (642)
..+.+|++.. +. ....+... .....+.|+|||++|++.+ ..|+++|+.+++. ...+.
T Consensus 115 ~~i~v~d~~~---------~~----~~~~~~~~--~~~~~~~~s~dg~~l~~~~-----~~i~~~d~~~~~~---~~~~~ 171 (337)
T 1pby_B 115 TRVALYDAET---------LS----RRKAFEAP--RQITMLAWARDGSKLYGLG-----RDLHVMDPEAGTL---VEDKP 171 (337)
T ss_dssp CEEEEEETTT---------TE----EEEEEECC--SSCCCEEECTTSSCEEEES-----SSEEEEETTTTEE---EEEEC
T ss_pred ceEEEEECCC---------Cc----EEEEEeCC--CCcceeEECCCCCEEEEeC-----CeEEEEECCCCcE---eeeee
Confidence 5666666532 21 22333332 3566789999999998872 3799999998885 34444
Q ss_pred CCCCcccceeEecCCCEEEEEecCCCC----------------CCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccc
Q 039497 481 DGPWIDTMPSWSPKGDLIAFSSNRHNP----------------DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERI 544 (642)
Q Consensus 481 ~~~~~~~~~~~spdG~~l~~~~~~~~~----------------~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 544 (642)
... ......|+|||+.|++....... .......|+++|+.+++...+....... .+
T Consensus 172 ~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-------~~ 243 (337)
T 1pby_B 172 IQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV-------FY 243 (337)
T ss_dssp STT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSS-------CE
T ss_pred ccc-cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCC-------ce
Confidence 332 12345899999988766543210 0001126899999988876443322222 34
Q ss_pred cceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEee
Q 039497 545 NHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 545 ~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~ 617 (642)
..+.|+|||++|++.. + .|++|++.+++.......+.....++|+|||++++..
T Consensus 244 ~~~~~s~dg~~l~~~~--~-----------------~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 297 (337)
T 1pby_B 244 FSTAVNPAKTRAFGAY--N-----------------VLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG 297 (337)
T ss_dssp EEEEECTTSSEEEEEE--S-----------------EEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEE
T ss_pred eeEEECCCCCEEEEeC--C-----------------eEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEE
Confidence 5789999999988772 1 8999999887754444334456789999999876554
No 124
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3e-15 Score=156.21 Aligned_cols=255 Identities=9% Similarity=-0.045 Sum_probs=162.8
Q ss_pred CcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEEC
Q 039497 282 FHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKS 361 (642)
Q Consensus 282 ~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~ 361 (642)
..+...+|||||+.|+....+... . .... ...+..........+|+|||. .+...++. .
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~TV------~----d~~~-~~~l~gh~~~v~~V~FsPdg~--------~~~~~~~~--~ 74 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDISI------G----QPKY-AKDINCNSKNLFHVKEFPLEF--------ENKLDFEL--A 74 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSEEE------E----EECC-CSCCSSBGGGTEEEEEECCCC--------CCTTTTSC--C
T ss_pred ccEEEEEECCCCCEEEEEcCCcee------e----cccc-cceecCCCccEEEEEECCCCC--------cceEEEEe--C
Confidence 345677999999999986443331 0 1000 011100011123568899991 22233321 2
Q ss_pred CCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCC----CC
Q 039497 362 DGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEET----GN 437 (642)
Q Consensus 362 ~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 437 (642)
++.....+.....+..++|||||+.|+.++. ++.+.+|+... ....+. +.. ..
T Consensus 75 ~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~-------dg~V~iwd~~~---------------~l~~l~-~~~~~~~~s 131 (588)
T 2j04_A 75 QQNGLLNSQPVCYPRVCKPSPIDDWMAVLSN-------NGNVSVFKDNK---------------MLTNLD-SKGNLSSRT 131 (588)
T ss_dssp CSSCSSTTSCSCCEEEEEECSSSSCEEEEET-------TSCEEEEETTE---------------EEEECC-CSSCSTTTC
T ss_pred CCceEeecCCCCcEEEEEECCCCCEEEEEeC-------CCcEEEEeCCc---------------eeeecc-CCCcccccc
Confidence 2222222222567889999999999999885 78899998422 333344 330 24
Q ss_pred ccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcccc----ceeeC----CCCCCcccceeEecCCCEEEEEecCCCCCC
Q 039497 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG----DIRQL----TDGPWIDTMPSWSPKGDLIAFSSNRHNPDN 509 (642)
Q Consensus 438 ~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~----~~~~l----~~~~~~~~~~~~spdG~~l~~~~~~~~~~~ 509 (642)
+..++|||||++|+..+.+ ..|.+|++.++.... .+..+ ..+...+..++||||| |+..+.++.
T Consensus 132 v~svafSPDG~~LAsgs~D---GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t--- 203 (588)
T 2j04_A 132 YHCFEWNPIESSIVVGNED---GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS--- 203 (588)
T ss_dssp EEEEEECSSSSCEEEEETT---SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC---
T ss_pred EEEEEEcCCCCEEEEEcCC---CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCe---
Confidence 6789999999999988743 489999998774100 02444 3334567889999999 555555544
Q ss_pred CCceeEEEEeCCCCceE----EeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEE
Q 039497 510 VEAFSLYVIKPDGSGLR----RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVV 585 (642)
Q Consensus 510 ~~~~~l~~~d~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 585 (642)
+++|++++++.. .+. ..+.. .+..++|+ |+.|+.++ ++ .|.+|
T Consensus 204 -----VrlWd~~~~~~~~~~~tL~-~~h~~-------~V~svaFs--g~~LASa~-~~-----------------tIkLW 250 (588)
T 2j04_A 204 -----VFSMTVSASSHQPVSRMIQ-NASRR-------KITDLKIV--DYKVVLTC-PG-----------------YVHKI 250 (588)
T ss_dssp -----EEEECCCSSSSCCCEEEEE-CCCSS-------CCCCEEEE--TTEEEEEC-SS-----------------EEEEE
T ss_pred -----EEEEECCCCccccceeeec-ccccC-------cEEEEEEE--CCEEEEEe-CC-----------------eEEEE
Confidence 999999887742 232 13333 57889999 67787665 22 79999
Q ss_pred EcCCCceeecc-CCCCCCCCcEE--ecCCceEEeecCCC
Q 039497 586 KLDGSGLRRLT-WNGYENGTPAW--HPGNQLDLGKLRLE 621 (642)
Q Consensus 586 ~~~~~~~~~lt-~~~~~~~~~~~--s~dg~~~~~~~~~~ 621 (642)
++.+++...+. .+...+.+++| |||++.++.....|
T Consensus 251 d~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG 289 (588)
T 2j04_A 251 DLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTS 289 (588)
T ss_dssp ETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCE
T ss_pred ECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCC
Confidence 99998874444 66677788999 99998887766544
No 125
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.65 E-value=2.1e-14 Score=148.58 Aligned_cols=282 Identities=14% Similarity=0.027 Sum_probs=182.1
Q ss_pred eeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecC--------------CCCcccCCeecCC----C---C
Q 039497 236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLN--------------PNFHHYNPFVSAN----S---E 294 (642)
Q Consensus 236 ~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~--------------~~~~~~~~~~spD----g---~ 294 (642)
..+..+...+..++|+| ++|+....++ .|.+|++... +...+....|+|+ | +
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~ 82 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDG-----YLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 82 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTS-----EEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCC-----EEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc
Confidence 34455666788888988 6777755443 8999998433 3445567789999 8 8
Q ss_pred EEEEEEeecCCCCCCcccceEeeccCCCce--eEEee--------eCCCccEEc----CCCCE-EEEEecCCCceeEEEE
Q 039497 295 FIGYHRFRGESTEGQSTIPHLEPVASPVKE--LRMLR--------LNGSFPSFS----PDGGL-IVFNHDFELNAGIKIA 359 (642)
Q Consensus 295 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--------~~~~~~~~s----pdg~~-l~~~~~~~~~~~l~~~ 359 (642)
.|+....++. ..+|-......... +.... .....+.|+ |+++. |+.... + ..|.++
T Consensus 83 ~l~s~~~dg~------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-d--g~i~iw 153 (397)
T 1sq9_A 83 LVATTSFSGD------LLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV-K--GTTYIW 153 (397)
T ss_dssp EEEEEETTSC------EEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET-T--SCEEEE
T ss_pred EEEEEcCCCC------EEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeC-C--CcEEEE
Confidence 8877755443 33343322221000 11111 112456899 99998 766554 2 556666
Q ss_pred ECCC------CCe-e-----EEe--------ecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCC
Q 039497 360 KSDG------SKR-W-----TLI--------KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNN 419 (642)
Q Consensus 360 d~~~------~~~-~-----~l~--------~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 419 (642)
++.. ++. . .+. ....+..+.|+|++ .|+... .++.+.+|++.. +
T Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-------~dg~i~i~d~~~--------~ 217 (397)
T 1sq9_A 154 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF-------NNGTVQISELST--------L 217 (397)
T ss_dssp EEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC-------TTSEEEEEETTT--------T
T ss_pred eCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEe-------CCCcEEEEECCC--------C
Confidence 6665 322 2 332 15568899999999 666654 378899998854 1
Q ss_pred CCccccceEEccc---c---CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC------------
Q 039497 420 REEIPCDVKILTK---E---ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD------------ 481 (642)
Q Consensus 420 ~~~~~~~~~~l~~---~---~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~------------ 481 (642)
. ....+.. + . ..+..+.|+||+++|+..+...+...|.+||+.+++. +..+..
T Consensus 218 ~-----~~~~~~~~~~h~~~~-~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~ 288 (397)
T 1sq9_A 218 R-----PLYNFESQHSMINNS-NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER---IGSLSVPTHSSQASLGEF 288 (397)
T ss_dssp E-----EEEEEECCC---CCC-CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE---EEEECBC--------CCB
T ss_pred c-----eeEEEeccccccccC-CccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc---cceeccCccccccccccc
Confidence 1 3444444 3 4 6778899999999998877432226899999998876 555655
Q ss_pred -CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec-----CC---------------CCCCCcc
Q 039497 482 -GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-----GP---------------EGSGDVD 540 (642)
Q Consensus 482 -~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-----~~---------------~~~~~~~ 540 (642)
+...+..+.|+|+|++|+..+.++. |++||+.+++....... .+ ..
T Consensus 289 ~~~~~v~~~~~~~~~~~l~~~~~dg~--------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----- 355 (397)
T 1sq9_A 289 AHSSWVMSLSFNDSGETLCSAGWDGK--------LRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP----- 355 (397)
T ss_dssp SBSSCEEEEEECSSSSEEEEEETTSE--------EEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC-----
T ss_pred ccCCcEEEEEECCCCCEEEEEeCCCe--------EEEEEcCCCceeEEEecccCcccchhhhhccccccccccCC-----
Confidence 5567788999999999988886654 99999988765544331 11 22
Q ss_pred cccccceEEcCCC----------CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497 541 RERINHVCFSADG----------EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590 (642)
Q Consensus 541 ~~~~~~~~~S~Dg----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 590 (642)
.+..+.|+||| +.|+..+.++ .|.+|+++++
T Consensus 356 --~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg-----------------~i~iw~~~~g 396 (397)
T 1sq9_A 356 --GVFDVKFLKKGWRSGMGADLNESLCCVCLDR-----------------SIRWFREAGG 396 (397)
T ss_dssp --CEEEEEEECTTTSBSTTCTTSCEEEEEETTT-----------------EEEEEEEEC-
T ss_pred --ceeEEEeccccccccccccccceEEEecCCC-----------------cEEEEEcCCC
Confidence 67889999999 5676666554 6777777654
No 126
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.64 E-value=2.1e-13 Score=142.41 Aligned_cols=270 Identities=14% Similarity=0.146 Sum_probs=177.6
Q ss_pred ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCcccee-e--CCCCCccccceeecCCcEEEEEEeccCCceeeEE
Q 039497 196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTR-V--TPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIE 272 (642)
Q Consensus 196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~-l--~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~ 272 (642)
+.||+++ +++++. ++ .|+.|+..++ +... + ..+...+..++|+|||++|+....++ .+.
T Consensus 111 l~wS~~n-~lAvgl--d~--tV~lWd~~tg--------~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg-----~v~ 172 (420)
T 4gga_A 111 VDWSSGN-VLAVAL--DN--SVYLWSASSG--------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA-----EVQ 172 (420)
T ss_dssp EEECTTS-EEEEEE--TT--EEEEEETTTC--------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS-----CEE
T ss_pred EEECCCC-EEEEEe--CC--EEEEEECCCC--------CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCC-----eEE
Confidence 5999876 555552 55 6778888887 3333 2 23445688899999999999865544 789
Q ss_pred EEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCC
Q 039497 273 IYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFEL 352 (642)
Q Consensus 273 ~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 352 (642)
+||+... +.+... .+ .......++.+++.|+....
T Consensus 173 iWd~~~~--------------~~~~~~-------------------~~---------h~~~v~~~s~~~~~l~sgs~--- 207 (420)
T 4gga_A 173 LWDVQQQ--------------KRLRNM-------------------TS---------HSARVGSLSWNSYILSSGSR--- 207 (420)
T ss_dssp EEETTTT--------------EEEEEE-------------------CC---------CSSCEEEEEEETTEEEEEET---
T ss_pred EEEcCCC--------------cEEEEE-------------------eC---------CCCceEEEeeCCCEEEEEeC---
Confidence 9987321 111110 00 01112245566776666543
Q ss_pred ceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE
Q 039497 353 NAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI 429 (642)
Q Consensus 353 ~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 429 (642)
...+++++........... ...+....|+|+|+.++.... ++.+.+|++.. +. ........
T Consensus 208 d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~-------D~~v~i~~~~~--------~~-~~~~~~~~ 271 (420)
T 4gga_A 208 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN-------DNLVNVWPSAP--------GE-GGWVPLQT 271 (420)
T ss_dssp TSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET-------TSCEEEEESSC--------CS-SCSCCSEE
T ss_pred CCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec-------cccceEEeecc--------cc-ccceeeee
Confidence 3567777876654332222 556778899999999988774 68889998755 11 10002233
Q ss_pred ccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCC
Q 039497 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDN 509 (642)
Q Consensus 430 l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~ 509 (642)
..... ..+..+.|+|++..++.......+..|.+||+.+|+. ...+..+ ..+....|+|+++.|+..+...
T Consensus 272 ~~~~~-~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~---~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~---- 342 (420)
T 4gga_A 272 FTQHQ-GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC---LSAVDAH-SQVCSILWSPHYKELISGHGFA---- 342 (420)
T ss_dssp ECCCS-SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE---EEEEECS-SCEEEEEEETTTTEEEEEECTT----
T ss_pred ecccC-CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc---ceeeccc-cceeeeeecCCCCeEEEEEecC----
Confidence 34444 5677889999988877665433455899999999886 4444433 4567789999999998887432
Q ss_pred CCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 510 VEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 510 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
...|++||+.+++..... .++.+ .+..++|||||++|+..+.++
T Consensus 343 --d~~I~iwd~~~~~~v~~l-~gH~~-------~V~~l~~spdg~~l~S~s~D~ 386 (420)
T 4gga_A 343 --QNQLVIWKYPTMAKVAEL-KGHTS-------RVLSLTMSPDGATVASAAADE 386 (420)
T ss_dssp --TCCEEEEETTTCCEEEEE-CCCSS-------CEEEEEECTTSSCEEEEETTT
T ss_pred --CCEEEEEECCCCcEEEEE-cCCCC-------CEEEEEEcCCCCEEEEEecCC
Confidence 123999999887654433 25555 688999999999998877665
No 127
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.64 E-value=2.9e-14 Score=159.08 Aligned_cols=274 Identities=17% Similarity=0.153 Sum_probs=177.4
Q ss_pred eeCCCCCccccceeecCC-cEEEEEEeccCCceeeEEEEEee-------------cCCCCcccCCeecCCCCEEEEEEee
Q 039497 237 RVTPPGVHCFTPAAFHDG-KRLAVATRRKNRNFRHIEIYDLT-------------LNPNFHHYNPFVSANSEFIGYHRFR 302 (642)
Q Consensus 237 ~l~~~~~~~~~~~~SpdG-~~l~~~~~~~~~~~~~i~~~d~~-------------~~~~~~~~~~~~spDg~~l~~~~~~ 302 (642)
.+..|...+..++++|++ +.|+....++ .|++|++. ..+...+....|+|||+.|+....+
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~-----~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D 451 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDK-----SIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD 451 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTS-----EEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCC-----cEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 355666677888899876 5566644443 89999873 2345556678899999999887655
Q ss_pred cCCCCCCcccceEeeccCCCceeEEeee--CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-----cCCc
Q 039497 303 GESTEGQSTIPHLEPVASPVKELRMLRL--NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-----DRTA 375 (642)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-----~~~~ 375 (642)
+. ..+| .+........+... ......|+|+|++|+..+. ...|.++|..+.....+.. ...+
T Consensus 452 g~------v~vw--d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---D~~i~iwd~~~~~~~~~~~~~~~h~~~v 520 (694)
T 3dm0_A 452 GE------LRLW--DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR---DRTIKLWNTLGECKYTISEGGEGHRDWV 520 (694)
T ss_dssp SE------EEEE--ETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET---TSCEEEECTTSCEEEEECSSTTSCSSCE
T ss_pred Cc------EEEE--ECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC---CCEEEEEECCCCcceeeccCCCCCCCcE
Confidence 44 3333 22222111111111 1245689999998887664 3567777876654444432 2347
Q ss_pred eeeeeecCCC--EEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEE
Q 039497 376 FYNSWSPTEK--HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453 (642)
Q Consensus 376 ~~~~~spdg~--~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~ 453 (642)
..+.|+|++. .|+..+ .++.+++|++.. .. ....+..+. ..+..+.|||||++|+..
T Consensus 521 ~~~~~~~~~~~~~l~s~s-------~d~~v~vwd~~~--------~~-----~~~~~~~h~-~~v~~v~~spdg~~l~sg 579 (694)
T 3dm0_A 521 SCVRFSPNTLQPTIVSAS-------WDKTVKVWNLSN--------CK-----LRSTLAGHT-GYVSTVAVSPDGSLCASG 579 (694)
T ss_dssp EEEEECSCSSSCEEEEEE-------TTSCEEEEETTT--------CC-----EEEEECCCS-SCEEEEEECTTSSEEEEE
T ss_pred EEEEEeCCCCcceEEEEe-------CCCeEEEEECCC--------Cc-----EEEEEcCCC-CCEEEEEEeCCCCEEEEE
Confidence 7899999973 455554 378999999854 22 445555555 778889999999998877
Q ss_pred eCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCC
Q 039497 454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP 533 (642)
Q Consensus 454 ~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~ 533 (642)
+.+ ..|.+||+.+++. +..+.. ...+..+.|+|++.+|+...... |.+||+.++..........
T Consensus 580 ~~D---g~i~iwd~~~~~~---~~~~~~-~~~v~~~~~sp~~~~l~~~~~~~---------i~iwd~~~~~~~~~~~~~~ 643 (694)
T 3dm0_A 580 GKD---GVVLLWDLAEGKK---LYSLEA-NSVIHALCFSPNRYWLCAATEHG---------IKIWDLESKSIVEDLKVDL 643 (694)
T ss_dssp ETT---SBCEEEETTTTEE---EECCBC-SSCEEEEEECSSSSEEEEEETTE---------EEEEETTTTEEEEEECCCC
T ss_pred eCC---CeEEEEECCCCce---EEEecC-CCcEEEEEEcCCCcEEEEEcCCC---------EEEEECCCCCChhhhcccc
Confidence 743 4799999998875 444443 34567889999999877665432 9999998876543222110
Q ss_pred CC---------CCCcc--cccccceEEcCCCCEEEEEEecC
Q 039497 534 EG---------SGDVD--RERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 534 ~~---------~~~~~--~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
.. ..... ...+..+.|||||++|+..+.++
T Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg 684 (694)
T 3dm0_A 644 KAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG 684 (694)
T ss_dssp C----------------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred ccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence 00 00000 01245789999999998887765
No 128
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.63 E-value=3.6e-14 Score=147.22 Aligned_cols=226 Identities=11% Similarity=0.134 Sum_probs=156.4
Q ss_pred ccEEcC-CCCEEEEEecCCCceeEEEEECCCCC-------e-eEEee-cCCceeeeeecCCC-EEEEEEcCCCcccCCCe
Q 039497 334 FPSFSP-DGGLIVFNHDFELNAGIKIAKSDGSK-------R-WTLIK-DRTAFYNSWSPTEK-HVIYTSTGPIFQSERAT 402 (642)
Q Consensus 334 ~~~~sp-dg~~l~~~~~~~~~~~l~~~d~~~~~-------~-~~l~~-~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~ 402 (642)
.+.|+| +++.|+..+. ...|.++++..+. . ..+.. ...+..+.|+|+++ .|+..+ .++.
T Consensus 86 ~~~~~p~~~~~l~s~s~---dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~-------~dg~ 155 (402)
T 2aq5_A 86 DIAWCPHNDNVIASGSE---DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG-------CDNV 155 (402)
T ss_dssp EEEECTTCTTEEEEEET---TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE-------TTSC
T ss_pred EEEeCCCCCCEEEEEeC---CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEc-------CCCE
Confidence 568999 8888877654 3567888887752 2 23322 56788999999985 555555 3788
Q ss_pred EEEEEEEeecCCCCCCCCCccccceEEc--cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC-
Q 039497 403 VQIARVSFQLDPSDDNNREEIPCDVKIL--TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL- 479 (642)
Q Consensus 403 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l- 479 (642)
+.+|++.. +. ....+ ..+. ..+..+.|+|||+.|+..+. +..|.+||+.+++. +..+
T Consensus 156 i~iwd~~~--------~~-----~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~---~~~~~ 215 (402)
T 2aq5_A 156 ILVWDVGT--------GA-----AVLTLGPDVHP-DTIYSVDWSRDGALICTSCR---DKRVRVIEPRKGTV---VAEKD 215 (402)
T ss_dssp EEEEETTT--------TE-----EEEEECTTTCC-SCEEEEEECTTSSCEEEEET---TSEEEEEETTTTEE---EEEEE
T ss_pred EEEEECCC--------CC-----ccEEEecCCCC-CceEEEEECCCCCEEEEEec---CCcEEEEeCCCCce---eeeec
Confidence 99999855 22 44455 3344 67888999999999988874 34899999998875 4555
Q ss_pred CCCCCc-ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce-EEeeecCCCCCCCcccccccceEEcCCCCEEE
Q 039497 480 TDGPWI-DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL-RRIHVAGPEGSGDVDRERINHVCFSADGEWLL 557 (642)
Q Consensus 480 ~~~~~~-~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~ 557 (642)
..+... +..+.|+|||++|+...... ....|.+||+.+.+. ..+....... .+..+.|+|||+.|+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~l~~g~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~ 283 (402)
T 2aq5_A 216 RPHEGTRPVHAVFVSEGKILTTGFSRM-----SERQVALWDTKHLEEPLSLQELDTSS-------GVLLPFFDPDTNIVY 283 (402)
T ss_dssp CSSCSSSCCEEEECSTTEEEEEEECTT-----CCEEEEEEETTBCSSCSEEEECCCCS-------SCEEEEEETTTTEEE
T ss_pred cCCCCCcceEEEEcCCCcEEEEeccCC-----CCceEEEEcCccccCCceEEeccCCC-------ceeEEEEcCCCCEEE
Confidence 334333 57789999998777763221 234599999987653 2222222233 467899999999998
Q ss_pred EEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc--eeeccCC--CCCCCCcEEecCCceEEee
Q 039497 558 FTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG--LRRLTWN--GYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~lt~~--~~~~~~~~~s~dg~~~~~~ 617 (642)
++....+ .|.+|++..++ +..+... ...+..++|+|+++++++.
T Consensus 284 ~~g~~dg----------------~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~ 331 (402)
T 2aq5_A 284 LCGKGDS----------------SIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK 331 (402)
T ss_dssp EEETTCS----------------CEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG
T ss_pred EEEcCCC----------------eEEEEEecCCCcceEeecccccCCcccceEEecccccceec
Confidence 7764332 68888888766 4455443 3667899999999887753
No 129
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.63 E-value=5e-14 Score=147.87 Aligned_cols=285 Identities=12% Similarity=0.105 Sum_probs=174.4
Q ss_pred CCccCCceeCC-CCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeec--CC---CcceEee-CCeEEEEEecC
Q 039497 139 GVVDYSPSVSY-SGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCE--RG---GWPTWSG-DSTIYFHRQAD 211 (642)
Q Consensus 139 ~~~~~~~~~SP-DG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--~~---~~~~wsp-dg~~~~~~~~~ 211 (642)
.....+.+|+| +++.||....++ .|.+|++.+++...+... +. ..++|+| |+.++++. ..
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg------------~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~-s~ 185 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGG------------DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS-SM 185 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTS------------CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEE-CS
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCC------------EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEE-eC
Confidence 33456789999 567888887665 799999988876555432 22 2459998 56788877 56
Q ss_pred CCceEEEEEecCCCcccccCCccceeeCCC---CCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCe
Q 039497 212 DGWWSIFRVSFPENLEFLGFPIAPTRVTPP---GVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPF 288 (642)
Q Consensus 212 ~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 288 (642)
+|...|| |+.++ ....+... ...+..++|+|||++|+..... ..|.+||+....
T Consensus 186 D~~v~iw--d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d-----g~i~~wd~~~~~-------- 242 (435)
T 4e54_B 186 EGTTRLQ--DFKGN--------ILRVFASSDTINIWFCSLDVSASSRMVVTGDNV-----GNVILLNMDGKE-------- 242 (435)
T ss_dssp SSCEEEE--ETTSC--------EEEEEECCSSCSCCCCCEEEETTTTEEEEECSS-----SBEEEEESSSCB--------
T ss_pred CCEEEEe--eccCC--------ceeEEeccCCCCccEEEEEECCCCCEEEEEeCC-----CcEeeeccCcce--------
Confidence 7866665 55554 33333222 2345677899999988885433 378888862110
Q ss_pred ecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeE
Q 039497 289 VSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWT 368 (642)
Q Consensus 289 ~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~ 368 (642)
. ..+...... ...+.|+|+++.++.....+ ..|.++|+...+...
T Consensus 243 -----------------------~---~~~~~h~~~-------v~~v~~~p~~~~~~~s~s~d--~~v~iwd~~~~~~~~ 287 (435)
T 4e54_B 243 -----------------------L---WNLRMHKKK-------VTHVALNPCCDWFLATASVD--QTVKIWDLRQVRGKA 287 (435)
T ss_dssp -----------------------C---CCSBCCSSC-------EEEEEECTTCSSEEEEEETT--SBCCEEETTTCCSSS
T ss_pred -----------------------e---EEEecccce-------EEeeeecCCCceEEEEecCc--ceeeEEecccccccc
Confidence 0 000000011 12458899988665544323 456667776544321
Q ss_pred -Ee----ecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCC-----CCc
Q 039497 369 -LI----KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEET-----GNN 438 (642)
Q Consensus 369 -l~----~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~ 438 (642)
+. ....+..+.|+|||++|+..+. ++.++||++.. +. ....+..+.. ...
T Consensus 288 ~~~~~~~h~~~v~~~~~spdg~~l~s~~~-------D~~i~iwd~~~--------~~-----~~~~~~~~~~~~~~~~~~ 347 (435)
T 4e54_B 288 SFLYSLPHRHPVNAACFSPDGARLLTTDQ-------KSEIRVYSASQ--------WD-----CPLGLIPHPHRHFQHLTP 347 (435)
T ss_dssp CCSBCCBCSSCEEECCBCTTSSEEEEEES-------SSCEEEEESSS--------SS-----SEEEECCCCCCCCSSSCC
T ss_pred eEEEeeeccccccceeECCCCCeeEEEcC-------CCEEEEEECCC--------Cc-----cceEEeccccccccccee
Confidence 11 1456788999999999988774 78899999865 22 2233222110 122
Q ss_pred cCcEECCCCCeEEEEeCCCC---------ceeEEEEECCCCccccceeeCCC-CCCcccce-eEecCCCEEEEEecCCCC
Q 039497 439 AFPSCSPDGKFLVFRSGRSG---------HKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMP-SWSPKGDLIAFSSNRHNP 507 (642)
Q Consensus 439 ~~~~~SpDg~~l~~~~~~~g---------~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~-~~spdG~~l~~~~~~~~~ 507 (642)
....|+|++..++.....++ ...|.+||..+|+. +..+.. +...+..+ +|||||++|+..+ ++
T Consensus 348 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~---~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~-- 421 (435)
T 4e54_B 348 IKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM---MCQLYDPESSGISSLNEFNPMGDTLASAM-GY-- 421 (435)
T ss_dssp CBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE---EEEECCSSCCCCCCEEEECTTSSCEEEEC-SS--
T ss_pred EEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE---EEEEeCCCCCcEEEEEEECCCCCEEEEEc-CC--
Confidence 34578888888877654322 23688999999886 555543 33344554 7999999887654 32
Q ss_pred CCCCceeEEEEeCCCCceE
Q 039497 508 DNVEAFSLYVIKPDGSGLR 526 (642)
Q Consensus 508 ~~~~~~~l~~~d~~~~~~~ 526 (642)
.|++|++..++.+
T Consensus 422 ------~i~iW~~~~gk~r 434 (435)
T 4e54_B 422 ------HILIWSQQEARTR 434 (435)
T ss_dssp ------EEEECCCC-----
T ss_pred ------cEEEEECCcCeee
Confidence 3999999887654
No 130
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.63 E-value=2.2e-13 Score=142.28 Aligned_cols=267 Identities=12% Similarity=0.080 Sum_probs=179.0
Q ss_pred ceEEEEccCCceEeccc---CCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC-Ccc
Q 039497 121 ALYSTDLKASKFTRLTP---YGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG-GWP 196 (642)
Q Consensus 121 ~l~~~~~~~~~~~~lt~---~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~ 196 (642)
.|++.+..+|+..++.. +.......+|||||++||....+. .|.+|++.+++..+....+. ...
T Consensus 126 tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg------------~v~iWd~~~~~~~~~~~~h~~~v~ 193 (420)
T 4gga_A 126 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA------------EVQLWDVQQQKRLRNMTSHSARVG 193 (420)
T ss_dssp EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS------------CEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCC------------eEEEEEcCCCcEEEEEeCCCCceE
Confidence 57777999998766543 333457789999999999988766 79999999887655544333 334
Q ss_pred eEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEe
Q 039497 197 TWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL 276 (642)
Q Consensus 197 ~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~ 276 (642)
.++.++.++++. ..++ .++.++...... ....+..+...+....++|+|++++....++ .+.+|+.
T Consensus 194 ~~s~~~~~l~sg-s~d~--~i~~~d~~~~~~------~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~-----~v~i~~~ 259 (420)
T 4gga_A 194 SLSWNSYILSSG-SRSG--HIHHHDVRVAEH------HVATLSGHSQEVCGLRWAPDGRHLASGGNDN-----LVNVWPS 259 (420)
T ss_dssp EEEEETTEEEEE-ETTS--EEEEEETTSSSC------EEEEEECCSSCEEEEEECTTSSEEEEEETTS-----CEEEEES
T ss_pred EEeeCCCEEEEE-eCCC--ceeEeeecccce------eeEEecccccceeeeeecCCCCeeeeeeccc-----cceEEee
Confidence 677788888777 4566 445555444321 3445556655677788999999988865544 6778876
Q ss_pred ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeE
Q 039497 277 TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGI 356 (642)
Q Consensus 277 ~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l 356 (642)
........ . +....... .......|+|++..++..........|
T Consensus 260 ~~~~~~~~---------------------------~--~~~~~~~~-------~~V~~~~~~p~~~~~la~~~gs~D~~I 303 (420)
T 4gga_A 260 APGEGGWV---------------------------P--LQTFTQHQ-------GAVKAVAWCPWQSNVLATGGGTSDRHI 303 (420)
T ss_dssp SCCSSCSC---------------------------C--SEEECCCS-------SCEEEEEECTTCTTEEEEEECTTTCEE
T ss_pred ccccccce---------------------------e--eeeecccC-------CceeeeeeCCCcccEEEEEeecCCCEE
Confidence 32210000 0 00000000 011245789987766665433445789
Q ss_pred EEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCC
Q 039497 357 KIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEET 435 (642)
Q Consensus 357 ~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 435 (642)
.++|+.++....... ...+....|+|+++.++.+.. ..++.++||++.. +. ....+..+.
T Consensus 304 ~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg-----~~d~~I~iwd~~~--------~~-----~v~~l~gH~- 364 (420)
T 4gga_A 304 RIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHG-----FAQNQLVIWKYPT--------MA-----KVAELKGHT- 364 (420)
T ss_dssp EEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEEC-----TTTCCEEEEETTT--------CC-----EEEEECCCS-
T ss_pred EEEeCCccccceeeccccceeeeeecCCCCeEEEEEe-----cCCCEEEEEECCC--------Cc-----EEEEEcCCC-
Confidence 999998887655444 666788999999999988763 2367899998854 22 566677666
Q ss_pred CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCc
Q 039497 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE 471 (642)
Q Consensus 436 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~ 471 (642)
..+..++|||||++|+..+.+ ..|.+|++....
T Consensus 365 ~~V~~l~~spdg~~l~S~s~D---~tvriWdv~~~~ 397 (420)
T 4gga_A 365 SRVLSLTMSPDGATVASAAAD---ETLRLWRCFELD 397 (420)
T ss_dssp SCEEEEEECTTSSCEEEEETT---TEEEEECCSCSS
T ss_pred CCEEEEEEcCCCCEEEEEecC---CeEEEEECCCCC
Confidence 788899999999999877743 378889887544
No 131
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.63 E-value=9.9e-14 Score=138.11 Aligned_cols=279 Identities=13% Similarity=0.129 Sum_probs=180.6
Q ss_pred ceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeec--------CCCCcccCCeecCCCCEEEEEEeecCCC
Q 039497 235 PTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL--------NPNFHHYNPFVSANSEFIGYHRFRGEST 306 (642)
Q Consensus 235 ~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~--------~~~~~~~~~~~spDg~~l~~~~~~~~~~ 306 (642)
...+..+...+..++| |+|++|+....++ .+.+||+.. .+...+....|+|+++.|+....++.
T Consensus 11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg-----~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-- 82 (313)
T 3odt_A 11 SATLKGHDQDVRDVVA-VDDSKVASVSRDG-----TVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTM-- 82 (313)
T ss_dssp EEEECCCSSCEEEEEE-EETTEEEEEETTS-----EEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSC--
T ss_pred HHHhhCCCCCcEEEEe-cCCCEEEEEEcCC-----cEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCe--
Confidence 3455666667888888 9999988865544 899999832 34556677899999999988765544
Q ss_pred CCCcccceEeeccCCCcee-EEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeec-C
Q 039497 307 EGQSTIPHLEPVASPVKEL-RMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSP-T 383 (642)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~sp-d 383 (642)
...|..........+ ...........++.+++.++.... ...|.+++ .......+.. ...+..+.|+| +
T Consensus 83 ----i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~---d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~ 154 (313)
T 3odt_A 83 ----INGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSW---DKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFS 154 (313)
T ss_dssp ----EEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEET---TSEEEEEE-TTEEEEEEECCSSCEEEEEEEETT
T ss_pred ----EEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeC---CCCEEEEc-CCcEEEecccCCCceeEEEEccCC
Confidence 222211111111111 111111111233336777776654 35677777 2222222222 56677888888 8
Q ss_pred CCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEE
Q 039497 384 EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLF 463 (642)
Q Consensus 384 g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~ 463 (642)
++.|+..+. ++.+.+|+... ....+.......+..+.|+|+++ ++..+. ...|.
T Consensus 155 ~~~l~~~~~-------d~~i~i~d~~~---------------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~---dg~i~ 208 (313)
T 3odt_A 155 ENKFLTASA-------DKTIKLWQNDK---------------VIKTFSGIHNDVVRHLAVVDDGH-FISCSN---DGLIK 208 (313)
T ss_dssp TTEEEEEET-------TSCEEEEETTE---------------EEEEECSSCSSCEEEEEEEETTE-EEEEET---TSEEE
T ss_pred CCEEEEEEC-------CCCEEEEecCc---------------eEEEEeccCcccEEEEEEcCCCe-EEEccC---CCeEE
Confidence 888887764 67899998322 44455442226778899999998 655553 34899
Q ss_pred EEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCccccc
Q 039497 464 VLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRER 543 (642)
Q Consensus 464 ~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 543 (642)
+||+.+++. +..+..+...+..+.|+|+|+ |+..+.++. |++||+..++...... .... .
T Consensus 209 i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~-l~~~~~dg~--------v~iwd~~~~~~~~~~~-~~~~-------~ 268 (313)
T 3odt_A 209 LVDMHTGDV---LRTYEGHESFVYCIKLLPNGD-IVSCGEDRT--------VRIWSKENGSLKQVIT-LPAI-------S 268 (313)
T ss_dssp EEETTTCCE---EEEEECCSSCEEEEEECTTSC-EEEEETTSE--------EEEECTTTCCEEEEEE-CSSS-------C
T ss_pred EEECCchhh---hhhhhcCCceEEEEEEecCCC-EEEEecCCE--------EEEEECCCCceeEEEe-ccCc-------e
Confidence 999998886 666766667788899999995 666665543 9999998887655544 2233 5
Q ss_pred ccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee
Q 039497 544 INHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR 593 (642)
Q Consensus 544 ~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 593 (642)
+..+.|+|||+ ++..+.++ .|.+|++..++..
T Consensus 269 i~~~~~~~~~~-~~~~~~dg-----------------~i~iw~~~~~~~~ 300 (313)
T 3odt_A 269 IWSVDCMSNGD-IIVGSSDN-----------------LVRIFSQEKSRWA 300 (313)
T ss_dssp EEEEEECTTSC-EEEEETTS-----------------CEEEEESCGGGCC
T ss_pred EEEEEEccCCC-EEEEeCCC-----------------cEEEEeCCCCcee
Confidence 78899999998 44444433 7888998876543
No 132
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.5e-13 Score=144.89 Aligned_cols=235 Identities=9% Similarity=0.041 Sum_probs=151.9
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECC--CCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEE
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSD--GSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIA 406 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~--~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~ 406 (642)
..++|+|||++|++....+ ..|.++++. +++...... ...+..+.|+|||+.|+.... ++.+.+|
T Consensus 106 ~~~~~s~d~~~l~~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-------~g~v~~~ 176 (450)
T 2vdu_B 106 RNLRLTSDESRLIACADSD--KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK-------FGDVYSI 176 (450)
T ss_dssp EEEEECTTSSEEEEEEGGG--TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET-------TSEEEEE
T ss_pred EEEEEcCCCCEEEEEECCC--CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC-------CCcEEEE
Confidence 4568999999976655333 456666666 555444432 466889999999999988873 5667777
Q ss_pred EEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCC---CCeEEEEeCCCCceeEEEEECCCCccccceee-CCCC
Q 039497 407 RVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD---GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ-LTDG 482 (642)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD---g~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~-l~~~ 482 (642)
++.. +. ........+..+. ..+..+.|+|| +++|+..+.+ ..|++||+.+++. +.. +..+
T Consensus 177 ~~~~--------~~-~~~~~~~~~~~h~-~~v~~~~~sp~~~~~~~l~s~~~d---~~i~vwd~~~~~~---~~~~~~~h 240 (450)
T 2vdu_B 177 DINS--------IP-EEKFTQEPILGHV-SMLTDVHLIKDSDGHQFIITSDRD---EHIKISHYPQCFI---VDKWLFGH 240 (450)
T ss_dssp ETTS--------CC-CSSCCCCCSEECS-SCEEEEEEEECTTSCEEEEEEETT---SCEEEEEESCTTC---EEEECCCC
T ss_pred ecCC--------cc-cccccceeeeccc-CceEEEEEcCCCCCCcEEEEEcCC---CcEEEEECCCCce---eeeeecCC
Confidence 6643 11 0000111333344 56788999999 8888777643 4799999988875 444 5456
Q ss_pred CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCC--C---------------CCCCccccccc
Q 039497 483 PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP--E---------------GSGDVDRERIN 545 (642)
Q Consensus 483 ~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~---------------~~~~~~~~~~~ 545 (642)
...+..++|+ ||++|+..+.++. |++||+.+++......... . .........+.
T Consensus 241 ~~~v~~~~~s-d~~~l~s~~~d~~--------v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 241 KHFVSSICCG-KDYLLLSAGGDDK--------IFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp SSCEEEEEEC-STTEEEEEESSSE--------EEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred CCceEEEEEC-CCCEEEEEeCCCe--------EEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 6778889999 9999998886654 9999998887544332100 0 00000011456
Q ss_pred ceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEc--CCC---c-eeeccCCCCCCCCcEEecCCceEEeecC
Q 039497 546 HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKL--DGS---G-LRRLTWNGYENGTPAWHPGNQLDLGKLR 619 (642)
Q Consensus 546 ~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~---~-~~~lt~~~~~~~~~~~s~dg~~~~~~~~ 619 (642)
.+.|+|||++|++.+...+ .|.+|++ ..+ . +..+..+ ..+..++|+|++ ++++..+
T Consensus 312 ~i~~~~~~~~l~~~~~~d~----------------~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~ 373 (450)
T 2vdu_B 312 KIIKSKNLPFVAFFVEATK----------------CIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDN 373 (450)
T ss_dssp EEEECSSSSEEEEEETTCS----------------EEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECC
T ss_pred EEEEeCCCCEEEEEECCCC----------------eEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEec
Confidence 7899999999988873322 6777777 333 2 3334444 567889999965 4544433
No 133
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.63 E-value=1.7e-13 Score=152.87 Aligned_cols=284 Identities=14% Similarity=0.100 Sum_probs=184.8
Q ss_pred ecccCCCccCCceeCCCC-cEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCc------eeEeecCC--CcceEeeCCeE
Q 039497 134 RLTPYGVVDYSPSVSYSG-KFIAVASYESRPWPGEFHELNTDIVVFQESDPNK------RVIVCERG--GWPTWSGDSTI 204 (642)
Q Consensus 134 ~lt~~~~~~~~~~~SPDG-~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~------~~l~~~~~--~~~~wspdg~~ 204 (642)
.|..|.......+|+|++ +.|+..+.+. .|.+|++..... +.+..+.. ..++|+|||++
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~------------~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~ 444 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDK------------SIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQF 444 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTS------------EEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCC------------cEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCE
Confidence 355566666778899976 6777777666 788999876432 12222222 24599999998
Q ss_pred EEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcc
Q 039497 205 YFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHH 284 (642)
Q Consensus 205 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~ 284 (642)
+++. ..+| .|..+++.++. ....+..+...+..++|+|||++|+....++ .|.+||+..
T Consensus 445 l~sg-s~Dg--~v~vwd~~~~~-------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~-----~i~iwd~~~------ 503 (694)
T 3dm0_A 445 ALSG-SWDG--ELRLWDLAAGV-------STRRFVGHTKDVLSVAFSLDNRQIVSASRDR-----TIKLWNTLG------ 503 (694)
T ss_dssp EEEE-ETTS--EEEEEETTTTE-------EEEEEECCSSCEEEEEECTTSSCEEEEETTS-----CEEEECTTS------
T ss_pred EEEE-eCCC--cEEEEECCCCc-------ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCC-----EEEEEECCC------
Confidence 8887 5677 45555666663 4456667766788899999999998866554 788888521
Q ss_pred cCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCC--CEEEEEecCCCceeEEEEECC
Q 039497 285 YNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDG--GLIVFNHDFELNAGIKIAKSD 362 (642)
Q Consensus 285 ~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg--~~l~~~~~~~~~~~l~~~d~~ 362 (642)
........ .. ...... .....|+|++ ..|+..+. ...|.++|+.
T Consensus 504 ---------~~~~~~~~-~~--------------~~h~~~-------v~~~~~~~~~~~~~l~s~s~---d~~v~vwd~~ 549 (694)
T 3dm0_A 504 ---------ECKYTISE-GG--------------EGHRDW-------VSCVRFSPNTLQPTIVSASW---DKTVKVWNLS 549 (694)
T ss_dssp ---------CEEEEECS-ST--------------TSCSSC-------EEEEEECSCSSSCEEEEEET---TSCEEEEETT
T ss_pred ---------Ccceeecc-CC--------------CCCCCc-------EEEEEEeCCCCcceEEEEeC---CCeEEEEECC
Confidence 00000000 00 000000 1245789987 34554433 3578888998
Q ss_pred CCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccC
Q 039497 363 GSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAF 440 (642)
Q Consensus 363 ~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 440 (642)
.++...... ...+..+.|+|||+.|+..+. ++.+++|++.. +. ....+.. . ..+..
T Consensus 550 ~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~-------Dg~i~iwd~~~--------~~-----~~~~~~~-~-~~v~~ 607 (694)
T 3dm0_A 550 NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK-------DGVVLLWDLAE--------GK-----KLYSLEA-N-SVIHA 607 (694)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSEEEEEET-------TSBCEEEETTT--------TE-----EEECCBC-S-SCEEE
T ss_pred CCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC-------CCeEEEEECCC--------Cc-----eEEEecC-C-CcEEE
Confidence 877554443 556889999999999988774 78899999854 11 2233322 2 45777
Q ss_pred cEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC-------------------CcccceeEecCCCEEEEE
Q 039497 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP-------------------WIDTMPSWSPKGDLIAFS 501 (642)
Q Consensus 441 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~-------------------~~~~~~~~spdG~~l~~~ 501 (642)
+.||||+..|+.... ..|.+||+.+++. +..+.... ..+..+.|||||++|+..
T Consensus 608 ~~~sp~~~~l~~~~~----~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sg 680 (694)
T 3dm0_A 608 LCFSPNRYWLCAATE----HGIKIWDLESKSI---VEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSG 680 (694)
T ss_dssp EEECSSSSEEEEEET----TEEEEEETTTTEE---EEEECCCCC----------------CCCCEEEEEECTTSSEEEEE
T ss_pred EEEcCCCcEEEEEcC----CCEEEEECCCCCC---hhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEE
Confidence 899999988876653 2599999998875 33332110 123567999999999988
Q ss_pred ecCCCCCCCCceeEEEEeCC
Q 039497 502 SNRHNPDNVEAFSLYVIKPD 521 (642)
Q Consensus 502 ~~~~~~~~~~~~~l~~~d~~ 521 (642)
+.++. |.+|++.
T Consensus 681 s~Dg~--------i~iW~i~ 692 (694)
T 3dm0_A 681 YTDGV--------IRVWGIG 692 (694)
T ss_dssp ETTSE--------EEEEEC-
T ss_pred cCCCe--------EEEEecc
Confidence 87764 8888874
No 134
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.62 E-value=1.5e-14 Score=147.07 Aligned_cols=280 Identities=11% Similarity=0.049 Sum_probs=174.1
Q ss_pred CCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeec---------CCCCcccCCeecCC---CCEEEEEEeecCCCC
Q 039497 240 PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL---------NPNFHHYNPFVSAN---SEFIGYHRFRGESTE 307 (642)
Q Consensus 240 ~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~---------~~~~~~~~~~~spD---g~~l~~~~~~~~~~~ 307 (642)
.+...+..++|+|+|+.++++.... .....+.+||+.. .+...+....|+|+ |+.|+....++.
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~-~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~--- 91 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFA-RGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN--- 91 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC---CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC---
T ss_pred CCCCceEEEEEcCCCceEEEecCcc-CCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe---
Confidence 3555788899999998887755320 1144899999832 23445667889999 677777654443
Q ss_pred CCcccceEeeccCCCceeEEee-eCC--Ccc------EEcCCCCEEEEEecCCCceeEEEEECCCCC-eeE-Eee-cC--
Q 039497 308 GQSTIPHLEPVASPVKELRMLR-LNG--SFP------SFSPDGGLIVFNHDFELNAGIKIAKSDGSK-RWT-LIK-DR-- 373 (642)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~------~~spdg~~l~~~~~~~~~~~l~~~d~~~~~-~~~-l~~-~~-- 373 (642)
..+| .+......+.... ... ..+ .|+|+++.|+.... ...|.++|+..++ ... +.. .+
T Consensus 92 ---i~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~ 163 (357)
T 3i2n_A 92 ---LHIW--NLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSR---DGTVKVWDPRQKDDPVANMEPVQGEN 163 (357)
T ss_dssp ---EEEE--CTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEET---TSCEEEECTTSCSSCSEEECCCTTSC
T ss_pred ---EEEE--eCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeC---CCeEEEEeCCCCCCcceeccccCCCC
Confidence 2222 2222210111111 111 122 56899998887654 3678888988765 233 322 11
Q ss_pred --Cceeee----eecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECC--
Q 039497 374 --TAFYNS----WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSP-- 445 (642)
Q Consensus 374 --~~~~~~----~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-- 445 (642)
.+..+. |+|+++.|+.... ++.+++|++.. + ......... ..+..+.|+|
T Consensus 164 ~~~v~~~~~~~~~~~~~~~l~~~~~-------d~~i~i~d~~~---------~-----~~~~~~~~~-~~v~~~~~~~~~ 221 (357)
T 3i2n_A 164 KRDCWTVAFGNAYNQEERVVCAGYD-------NGDIKLFDLRN---------M-----ALRWETNIK-NGVCSLEFDRKD 221 (357)
T ss_dssp CCCEEEEEEECCCC-CCCEEEEEET-------TSEEEEEETTT---------T-----EEEEEEECS-SCEEEEEESCSS
T ss_pred CCceEEEEEEeccCCCCCEEEEEcc-------CCeEEEEECcc---------C-----ceeeecCCC-CceEEEEcCCCC
Confidence 445555 8899999988874 67899998754 2 333333344 6778899999
Q ss_pred -CCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-----CCCCcccceeEecCCC-EEEEEecCCCCCCCCceeEEEE
Q 039497 446 -DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-----DGPWIDTMPSWSPKGD-LIAFSSNRHNPDNVEAFSLYVI 518 (642)
Q Consensus 446 -Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-----~~~~~~~~~~~spdG~-~l~~~~~~~~~~~~~~~~l~~~ 518 (642)
++++|+..+.. ..|.+||+.+++. ...+. .+...+..+.|+|+|+ +|+..+.++ .|++|
T Consensus 222 ~~~~~l~~~~~d---g~i~i~d~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--------~i~iw 287 (357)
T 3i2n_A 222 ISMNKLVATSLE---GKFHVFDMRTQHP---TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG--------GLHLW 287 (357)
T ss_dssp SSCCEEEEEEST---TEEEEEEEEEEET---TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS--------EEEEE
T ss_pred CCCCEEEEECCC---CeEEEEeCcCCCc---ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC--------cEEEe
Confidence 99998887643 3788888877654 23222 5566778899999999 455555544 38888
Q ss_pred eCCCCceE-----------------Eee-ecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCC
Q 039497 519 KPDGSGLR-----------------RIH-VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYG 580 (642)
Q Consensus 519 d~~~~~~~-----------------~l~-~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 580 (642)
|+..+... .+. ...+.. .+..++|+|||+.|+++....+
T Consensus 288 d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~~s~~~d~---------------- 344 (357)
T 3i2n_A 288 KYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ-------PISSLDWSPDKRGLCVCSSFDQ---------------- 344 (357)
T ss_dssp EEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS-------CEEEEEECSSSTTEEEEEETTS----------------
T ss_pred ecCCCcccccccCCCCccccccccceeeccccCCC-------CeeEEEEcCCCCeEEEEecCCC----------------
Confidence 88654322 121 122333 5788999999999986554332
Q ss_pred cEEEEEcCCC
Q 039497 581 DLYVVKLDGS 590 (642)
Q Consensus 581 ~l~~~~~~~~ 590 (642)
.|.+|++...
T Consensus 345 ~i~iw~~~~~ 354 (357)
T 3i2n_A 345 TVRVLIVTKL 354 (357)
T ss_dssp EEEEEEECC-
T ss_pred cEEEEECCCc
Confidence 6778877653
No 135
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2e-13 Score=135.92 Aligned_cols=282 Identities=9% Similarity=0.027 Sum_probs=180.4
Q ss_pred EecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---cceEeeCCeEEEEEe
Q 039497 133 TRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---WPTWSGDSTIYFHRQ 209 (642)
Q Consensus 133 ~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---~~~wspdg~~~~~~~ 209 (642)
..+..+.......+| |||++||....++ .|.+|++.+++.......+.. .++|+|++.++++.
T Consensus 12 ~~l~~h~~~v~~~~~-~~~~~l~s~~~dg------------~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~- 77 (313)
T 3odt_A 12 ATLKGHDQDVRDVVA-VDDSKVASVSRDG------------TVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFG- 77 (313)
T ss_dssp EEECCCSSCEEEEEE-EETTEEEEEETTS------------EEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEE-
T ss_pred HHhhCCCCCcEEEEe-cCCCEEEEEEcCC------------cEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEe-
Confidence 344455555566788 9999999887665 799999988876555543332 45999999888887
Q ss_pred cCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCee
Q 039497 210 ADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFV 289 (642)
Q Consensus 210 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 289 (642)
..+|...+|.+....... ....+..+...+..+.| +++.|+....++ .+.+||.
T Consensus 78 ~~dg~i~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~-----~i~~~d~------------- 131 (313)
T 3odt_A 78 GKDTMINGVPLFATSGED------PLYTLIGHQGNVCSLSF--QDGVVISGSWDK-----TAKVWKE------------- 131 (313)
T ss_dssp ETTSCEEEEETTCCTTSC------C-CEECCCSSCEEEEEE--ETTEEEEEETTS-----EEEEEET-------------
T ss_pred cCCCeEEEEEeeecCCCC------cccchhhcccCEEEEEe--cCCEEEEEeCCC-----CEEEEcC-------------
Confidence 567866666654332110 33445555555555555 677777755443 6777762
Q ss_pred cCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcC-CCCEEEEEecCCCceeEEEEECCCCCeeE
Q 039497 290 SANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSP-DGGLIVFNHDFELNAGIKIAKSDGSKRWT 368 (642)
Q Consensus 290 spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~d~~~~~~~~ 368 (642)
++.+... . ..... .....|+| +++.++.... ...|.++|... ....
T Consensus 132 ---~~~~~~~----------------~---~~~~~-------v~~~~~~~~~~~~l~~~~~---d~~i~i~d~~~-~~~~ 178 (313)
T 3odt_A 132 ---GSLVYNL----------------Q---AHNAS-------VWDAKVVSFSENKFLTASA---DKTIKLWQNDK-VIKT 178 (313)
T ss_dssp ---TEEEEEE----------------E---CCSSC-------EEEEEEEETTTTEEEEEET---TSCEEEEETTE-EEEE
T ss_pred ---CcEEEec----------------c---cCCCc-------eeEEEEccCCCCEEEEEEC---CCCEEEEecCc-eEEE
Confidence 0000000 0 00000 11335666 8888777654 35677777322 2122
Q ss_pred Ee--ecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCC
Q 039497 369 LI--KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD 446 (642)
Q Consensus 369 l~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD 446 (642)
+. ....+..+.|+|+++ ++.... ++.+.+|++.. +. ....+..+. ..+..+.|+||
T Consensus 179 ~~~~~~~~i~~~~~~~~~~-~~~~~~-------dg~i~i~d~~~--------~~-----~~~~~~~~~-~~i~~~~~~~~ 236 (313)
T 3odt_A 179 FSGIHNDVVRHLAVVDDGH-FISCSN-------DGLIKLVDMHT--------GD-----VLRTYEGHE-SFVYCIKLLPN 236 (313)
T ss_dssp ECSSCSSCEEEEEEEETTE-EEEEET-------TSEEEEEETTT--------CC-----EEEEEECCS-SCEEEEEECTT
T ss_pred EeccCcccEEEEEEcCCCe-EEEccC-------CCeEEEEECCc--------hh-----hhhhhhcCC-ceEEEEEEecC
Confidence 22 255688899999998 665553 77899998854 22 455555555 67888999999
Q ss_pred CCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce
Q 039497 447 GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL 525 (642)
Q Consensus 447 g~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~ 525 (642)
| .|+..+. ...|++||+.+++. ...+..+...+..+.|+|+|+. +..+.++. |++|++.+++.
T Consensus 237 ~-~l~~~~~---dg~v~iwd~~~~~~---~~~~~~~~~~i~~~~~~~~~~~-~~~~~dg~--------i~iw~~~~~~~ 299 (313)
T 3odt_A 237 G-DIVSCGE---DRTVRIWSKENGSL---KQVITLPAISIWSVDCMSNGDI-IVGSSDNL--------VRIFSQEKSRW 299 (313)
T ss_dssp S-CEEEEET---TSEEEEECTTTCCE---EEEEECSSSCEEEEEECTTSCE-EEEETTSC--------EEEEESCGGGC
T ss_pred C-CEEEEec---CCEEEEEECCCCce---eEEEeccCceEEEEEEccCCCE-EEEeCCCc--------EEEEeCCCCce
Confidence 9 4665553 34899999998886 5666666667788999999994 44555543 99999987654
No 136
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=99.62 E-value=7.8e-14 Score=137.03 Aligned_cols=264 Identities=10% Similarity=0.164 Sum_probs=176.6
Q ss_pred CcceEEEEeecCCceeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCC-----------Ccce
Q 039497 3 PKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSG-----------SPRI 71 (642)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g-----------~~~l 71 (642)
.|+.|+|....+ +..||+++..| ...++|+.... ..|+ |+|++|+|+..+.+ ...|
T Consensus 24 ~g~~iy~~n~~d---~~~ly~~~~dg-----~~~~~l~~~~~----~~i~-~~g~~Iyy~~~~~~~~~~~~~~~~n~~~I 90 (302)
T 3s25_A 24 SDGEVFFSNTND---NGRLYAMNIDG-----SNIHKLSNDTA----MYIN-ADKNYVYYVRNNNQKITSQTFFSYDRNSL 90 (302)
T ss_dssp ETTEEEEEEGGG---TTEEEEEETTS-----CSCEEEEEEEE----EEEE-ECSSEEEEEEECC------CCSSCCSEEE
T ss_pred eCCEEEEEeCCC---CceEEEEcCCC-----CCCEEccCCce----eeEE-EcCCEEEEEECCCCcccccceeccCCCeE
Confidence 577888884321 46899999999 89999997653 4578 99999999987653 4579
Q ss_pred EEEcCCCCcccccCCCCCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCC
Q 039497 72 YQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSG 151 (642)
Q Consensus 72 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG 151 (642)
|.+..+|.....+..... ...++++++|+|+...... ...||++++++...++|+.+.. ++++|+|
T Consensus 91 y~i~~dg~~~~~l~~~~~----~~~s~~g~~Iy~~~~~~~~------~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g 156 (302)
T 3s25_A 91 CRIKRNGHGSTVLDPDPC----IYASLIGNYIYYLHYDTQT------ATSLYRIRIDGEEKKKIKNHYL----FTCNTSD 156 (302)
T ss_dssp EEEETTSCCCEEEECSCE----EEEEEETTEEEEEEESSSS------CEEEEEEETTSCCCEEEESSCC----CCSEEET
T ss_pred EEEeCCCCcceEeecCCc----cEEEEeCCEEEEEeecCCC------CceEEEEECCCCCeEEEeCCCc----eEeeEEC
Confidence 999888754333332111 1345589999998721111 1279999999999999997754 4679999
Q ss_pred cEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCCcceEeeCC-eEEEEEecCCCceEEEEEecCCCccccc
Q 039497 152 KFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDS-TIYFHRQADDGWWSIFRVSFPENLEFLG 230 (642)
Q Consensus 152 ~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~wspdg-~~~~~~~~~~g~~~l~~~~~~~~~~~~~ 230 (642)
++|+|.... ...|+++++.++..++|.......| +.|++ .++|+. ..++ .+|++++++++
T Consensus 157 ~~iy~t~~g-----------~~~Iy~~~l~g~~~~~l~~~~~~~~-~~P~g~~iy~t~-~~~~-~~I~~~~ldG~----- 217 (302)
T 3s25_A 157 RYFYYNNPK-----------NGQLYRYDTASQSEALFYDCNCYKP-VVLDDTNVYYMD-VNRD-NAIVHVNINNP----- 217 (302)
T ss_dssp TEEEEECTT-----------TCCEEEEETTTTEEEEEECSCEEEE-EEEETTEEEEEE-GGGT-TEEEEECSSSC-----
T ss_pred CEEEEEeCC-----------CceEEEEECCCCCEEEEeCCCccce-eeecCCEEEEEE-cCCC-cEEEEEECCCC-----
Confidence 999999762 3479999999988887754222234 45887 466655 3233 79999999998
Q ss_pred CCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCc
Q 039497 231 FPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQS 310 (642)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~ 310 (642)
..+.|+.... +.++|+|++|+|+..... ..|+. ...+|.
T Consensus 218 ---~~~~Lt~~~~----~~~~~~g~~Iy~~~~~~~---~~i~~-------------------------~~~DG~------ 256 (302)
T 3s25_A 218 ---NPVVLTEANI----EHYNVYGSLIFYQRGGDN---PALCV-------------------------VKNDGT------ 256 (302)
T ss_dssp ---CCEECSCSCE----EEEEEETTEEEEEECSSS---CEEEE-------------------------EETTSC------
T ss_pred ---CeEEEeCCCc----ceEEECCCEEEEEECCCC---cEEEE-------------------------EECCCC------
Confidence 6677765442 568999999988643321 12222 222222
Q ss_pred ccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEE
Q 039497 311 TIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTL 369 (642)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l 369 (642)
..+ .+... ....+++-+++|+|..... ..|+.+++++....++
T Consensus 257 -----------~r~-~l~~~--~~~~i~i~~d~Iy~td~~~--~~i~~~~~dGs~~~~l 299 (302)
T 3s25_A 257 -----------GFK-ELAKG--EFCNINVTSQYVYFTDFVS--NKEYCTSTQNPDTIKA 299 (302)
T ss_dssp -----------CCE-EEEES--CEEEEEECSSEEEEEETTT--CCEEEEESSSCCSCEE
T ss_pred -----------ccE-EeeCC--ccceEEEeCCEEEEEECCC--CeEEEEECCCCCceEe
Confidence 111 01110 1225677889999987433 3599999988876665
No 137
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=99.60 E-value=6.1e-13 Score=148.87 Aligned_cols=295 Identities=9% Similarity=0.067 Sum_probs=186.1
Q ss_pred eCC-eEEEEEecCCCce-EEEEEec---CCC--cccccCCccceeeCC-------CCC-ccccceee-cCCcEEEEEEec
Q 039497 200 GDS-TIYFHRQADDGWW-SIFRVSF---PEN--LEFLGFPIAPTRVTP-------PGV-HCFTPAAF-HDGKRLAVATRR 263 (642)
Q Consensus 200 pdg-~~~~~~~~~~g~~-~l~~~~~---~~~--~~~~~~~~~~~~l~~-------~~~-~~~~~~~S-pdG~~l~~~~~~ 263 (642)
++| .+||++....... .+++.+. .++ . . +.+.. ++. ....++|| |||++|+|....
T Consensus 124 ~~g~~~yy~~~~~g~~~~vl~r~~~~~~~~~~~~-------~-~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lAy~~~~ 195 (751)
T 2xe4_A 124 VYGKYRYYTREVKGKPYKIYCRVFTDKEPGDVAA-------E-EVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDM 195 (751)
T ss_dssp EETTEEEEEEECTTCCSCEEEEEETTSCTTCTTT-------C-EEEEEHHHHTTTCSCCEEEEEEECTTTTCEEEEEEES
T ss_pred EECCEEEEEEECCCCceeEEEEEcCCCCCCCCcC-------C-EEEechhHhccCCCeEEEeeeEecCCCCCEEEEEEeC
Confidence 455 6777775444333 5777765 332 1 1 22211 122 45568899 999999999887
Q ss_pred cCCceeeEEEEEeecC-CCC------cccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCce-eEEeeeC--C-
Q 039497 264 KNRNFRHIEIYDLTLN-PNF------HHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKE-LRMLRLN--G- 332 (642)
Q Consensus 264 ~~~~~~~i~~~d~~~~-~~~------~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~- 332 (642)
.+.....|+++|+..+ ... ....+.|||||+.|+|.+.+... ....++...+...... ..+.... .
T Consensus 196 ~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~---~~~~v~~~~lgt~~~~~~lv~~~~~~~~ 272 (751)
T 2xe4_A 196 SGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETL---RENKVWRHVMGKLQSEDVCLYEEHNPLF 272 (751)
T ss_dssp SSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTC---CEEEEEEEETTSCGGGCEEEEECCCTTC
T ss_pred CCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCC---CCCEEEEEECCCCchhcEEEEecCCCce
Confidence 7777778999999665 311 13478999999999999765321 1134566666554322 1121111 1
Q ss_pred -CccEEcCCCCEEEEEecCCCceeEEEEECCCCC--e--eEEeecCCceeeeeecC---CCEEEEEEcCCCcccCCCeEE
Q 039497 333 -SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK--R--WTLIKDRTAFYNSWSPT---EKHVIYTSTGPIFQSERATVQ 404 (642)
Q Consensus 333 -~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~--~--~~l~~~~~~~~~~~spd---g~~l~~~~~~~~~~~~~~~~~ 404 (642)
..+.|||||++|++.........||+++++++. . +.+... ...+.|+++ |+.|+|.++.. .....+
T Consensus 273 ~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~s~~~~~g~~l~~~t~~~----~a~~~~ 346 (751)
T 2xe4_A 273 SAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR--EKGVRYDVQMHGTSHLVILTNEG----GAVNHK 346 (751)
T ss_dssp EEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC--CTTCCEEEEEETTTEEEEEECTT----TCTTCE
T ss_pred EEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC--CCCceEEEeeeeCCEEEEEeCCC----CCCCcE
Confidence 246899999999998766667899999998763 3 344332 234456666 99999998631 135677
Q ss_pred EEEEEeecCCCCCCCCCccccceEE-ccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEEC-------CCCc-cccc
Q 039497 405 IARVSFQLDPSDDNNREEIPCDVKI-LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA-------VNGE-FNGD 475 (642)
Q Consensus 405 l~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~-------~~g~-~~~~ 475 (642)
|+.++. + +.. ..+. +..+. .......+++++++|++...+++..+|+++++ ++|+ .
T Consensus 347 L~~~d~--~-----~~~----~~~~~li~~~-~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~--- 411 (751)
T 2xe4_A 347 LLIAPR--G-----QPS----DWSHVLVDHS-EDVFMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGL--- 411 (751)
T ss_dssp EEEEET--T-----STT----CCCCEEECCC-SSEEEEEEEECSSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCC---
T ss_pred EEEEcC--C-----Ccc----cceeeEECCC-CCcEEEEEEEECCEEEEEEEeCCEEEEEEEecccccccccCCccc---
Confidence 888876 3 110 2333 33222 22222346667889999998889999999996 5555 3
Q ss_pred eeeCCCC-CCcccceeE----ecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec
Q 039497 476 IRQLTDG-PWIDTMPSW----SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA 531 (642)
Q Consensus 476 ~~~l~~~-~~~~~~~~~----spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 531 (642)
+.|.-. ......+.+ +++++.|+|...... ....+|.+|+.+++.+.++..
T Consensus 412 -~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~----~P~~~~~~d~~~~~~~~l~~~ 467 (751)
T 2xe4_A 412 -REVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLA----TPNTWFDVSPQDHSRTAVKVR 467 (751)
T ss_dssp -EECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETT----EEEEEEEECTTTCCEEEEEEC
T ss_pred -eEECCCCceeEEEeccCcccCCCCCEEEEEEeCCC----CCCEEEEEECCCCcEEEEecc
Confidence 555422 122223333 568887777765543 577899999998888777753
No 138
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.60 E-value=2.5e-13 Score=138.44 Aligned_cols=295 Identities=10% Similarity=0.056 Sum_probs=174.8
Q ss_pred CCCccCCceeCCC---CcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee-c----C-C--CcceEeeC----C
Q 039497 138 YGVVDYSPSVSYS---GKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC-E----R-G--GWPTWSGD----S 202 (642)
Q Consensus 138 ~~~~~~~~~~SPD---G~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~----~-~--~~~~wspd----g 202 (642)
+.......+|+|+ |..++++.... ..|.+|++.+++..+... . . . ..++|+|+ |
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~-----------~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 85 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGS-----------NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSH 85 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEET-----------TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCC
T ss_pred CCCceEEEEEecccCCCCceEEEECCC-----------CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCC
Confidence 3444566789984 55433333222 268999998766543332 1 1 1 24599999 6
Q ss_pred eEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeec-CCcEEEEEEeccCCceeeEEEEEeecCCC
Q 039497 203 TIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFH-DGKRLAVATRRKNRNFRHIEIYDLTLNPN 281 (642)
Q Consensus 203 ~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp-dG~~l~~~~~~~~~~~~~i~~~d~~~~~~ 281 (642)
.++++. ..+| .|..++..++. ....+..+...+..++|+| +++.|+....++ .|.+||+...
T Consensus 86 ~~l~~~-~~dg--~i~v~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~-- 148 (366)
T 3k26_A 86 PLLAVA-GSRG--IIRIINPITMQ-------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDH-----ALRLWNIQTD-- 148 (366)
T ss_dssp EEEEEE-ETTC--EEEEECTTTCC-------EEEEEESCCSCEEEEEECSSCTTEEEEEETTS-----CEEEEETTTT--
T ss_pred CEEEEe-cCCC--EEEEEEchhce-------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCC-----eEEEEEeecC--
Confidence 677776 4567 56666766663 4455666666788899999 899888865544 7899987221
Q ss_pred CcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEEC
Q 039497 282 FHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKS 361 (642)
Q Consensus 282 ~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~ 361 (642)
+.+... ..+...... ...+.|+|+|+.|+.... ...|.++++
T Consensus 149 ------------~~~~~~----------------~~~~~~~~~-------v~~~~~~~~~~~l~~~~~---dg~i~i~d~ 190 (366)
T 3k26_A 149 ------------TLVAIF----------------GGVEGHRDE-------VLSADYDLLGEKIMSCGM---DHSLKLWRI 190 (366)
T ss_dssp ------------EEEEEE----------------CSTTSCSSC-------EEEEEECTTSSEEEEEET---TSCEEEEES
T ss_pred ------------eEEEEe----------------cccccccCc-------eeEEEECCCCCEEEEecC---CCCEEEEEC
Confidence 111100 000000001 123467777777666543 245666676
Q ss_pred CCCCeeEE----------------------------e--ecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 362 DGSKRWTL----------------------------I--KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 362 ~~~~~~~l----------------------------~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
..++.... . ....+..+.|+ ++.|+..+ .++.+.+|++..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-------~d~~i~~wd~~~- 260 (366)
T 3k26_A 191 NSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS-------CENAIVCWKPGK- 260 (366)
T ss_dssp CSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC-------SSSEEEEEEESS-
T ss_pred CCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe-------cCCEEEEEeCCC-
Confidence 65432110 0 23457778888 66666654 378899999865
Q ss_pred cCCCC---CCCCCccccceEEccccCCCCccCcEECCC--CCeEEEEeCCCCceeEEEEECCCCcccc-ceeeCCCC--C
Q 039497 412 LDPSD---DNNREEIPCDVKILTKEETGNNAFPSCSPD--GKFLVFRSGRSGHKNLFVLDAVNGEFNG-DIRQLTDG--P 483 (642)
Q Consensus 412 ~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD--g~~l~~~~~~~g~~~l~~~d~~~g~~~~-~~~~l~~~--~ 483 (642)
.... .............+..+. ..+..+.|+|| |++|+..+. ...|++||+.+++... ....+..+ .
T Consensus 261 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 335 (366)
T 3k26_A 261 -MEDDIDKIKPSESNVTILGRFDYSQ-CDIWYMRFSMDFWQKMLALGNQ---VGKLYVWDLEVEDPHKAKCTTLTHHKCG 335 (366)
T ss_dssp -TTCCGGGCCTTCCCEEEEEEEECSS-CCSSCCCCEECTTSSEEEEECT---TSCEEEEECCSSSGGGCEEEEECCTTCC
T ss_pred -ccccccccccCCcchheeccccccC-CcEEEEEEcCCCCCcEEEEEec---CCcEEEEECCCCCCccccceEEcccccC
Confidence 1000 000000000133333343 56778899999 998887753 3479999999876310 12245544 4
Q ss_pred CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC
Q 039497 484 WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD 521 (642)
Q Consensus 484 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~ 521 (642)
..+..+.|+|||++|+..+.++. |++||+.
T Consensus 336 ~~v~~~~~s~~~~~l~s~~~dg~--------i~iwd~~ 365 (366)
T 3k26_A 336 AAIRQTSFSRDSSILIAVCDDAS--------IWRWDRL 365 (366)
T ss_dssp SCEEEEEECTTSSEEEEEETTSE--------EEEEEC-
T ss_pred CceEEEEeCCCCCeEEEEeCCCE--------EEEEEec
Confidence 67788999999999998887764 8999874
No 139
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.60 E-value=7.7e-13 Score=133.19 Aligned_cols=231 Identities=14% Similarity=0.074 Sum_probs=143.8
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCC-----eeEE--ee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEE
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK-----RWTL--IK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQ 404 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~-----~~~l--~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 404 (642)
..+|+|+|+.|+..+. + ..|.++++.... ...+ .. ...+..+.|+|||++|+..+. ++.++
T Consensus 63 ~v~~sp~~~~las~s~-D--~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~-------D~~v~ 132 (330)
T 2hes_X 63 SVAWRPHTSLLAAGSF-D--STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR-------DKSVW 132 (330)
T ss_dssp EEEECTTSSEEEEEET-T--SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEET-------TSCEE
T ss_pred EEEECCCCCEEEEEeC-C--CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC-------CCEEE
Confidence 4589999998887664 2 456666764321 1111 11 456889999999999988874 78999
Q ss_pred EEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC
Q 039497 405 IARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW 484 (642)
Q Consensus 405 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~ 484 (642)
+|++.. . +.. ......+..+. ..+..+.|+||++.|+..+.+ ..|.+|+..++.. ..+..+..+..
T Consensus 133 iwd~~~--~------~~~-~~~~~~~~~h~-~~v~~v~~~p~~~~l~s~s~D---~~i~iW~~~~~~~-~~~~~~~~h~~ 198 (330)
T 2hes_X 133 IWETDE--S------GEE-YECISVLQEHS-QDVKHVIWHPSEALLASSSYD---DTVRIWKDYDDDW-ECVAVLNGHEG 198 (330)
T ss_dssp EEECCT--T------CCC-CEEEEEECCCS-SCEEEEEECSSSSEEEEEETT---SCEEEEEEETTEE-EEEEEECCCSS
T ss_pred EEeccC--C------CCC-eEEEEEeccCC-CceEEEEECCCCCEEEEEcCC---CeEEEEECCCCCe-eEEEEccCCCC
Confidence 999853 1 110 00233445554 678889999999998877643 3677788765521 01455666777
Q ss_pred cccceeEecC--CCEEEEEecCCCCCCCCceeEEEEeCCCCce------EEee--ecCCCCCCCcccccccceEEcCCCC
Q 039497 485 IDTMPSWSPK--GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL------RRIH--VAGPEGSGDVDRERINHVCFSADGE 554 (642)
Q Consensus 485 ~~~~~~~spd--G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~------~~l~--~~~~~~~~~~~~~~~~~~~~S~Dg~ 554 (642)
.+..+.|+|+ +..|+..+.++. |.+||+.++.. ..+. ...+.. .+..++|++++
T Consensus 199 ~v~~~~~~~~~~~~~l~s~s~D~~--------v~iw~~~~~~~~~~~~~~~~~~~~~~h~~-------~v~~v~~s~~~- 262 (330)
T 2hes_X 199 TVWSSDFDKTEGVFRLCSGSDDST--------VRVWKYMGDDEDDQQEWVCEAILPDVHKR-------QVYNVAWGFNG- 262 (330)
T ss_dssp CEEEEEECCSSSSCEEEEEETTSC--------EEEEEEEEECTTSCEEEEEEEECCSCCSS-------CEEEEEECTTS-
T ss_pred cEEEEEecCCCCeeEEEEEeCCCe--------EEEEEecCCCccccceeEEeeeccccccc-------ceEEEEEcCCC-
Confidence 7888999999 677777776654 88888754311 1111 111333 57889999766
Q ss_pred EEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce----eeccCCCC-CCCCcEEec--CCceEEeecCCC
Q 039497 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL----RRLTWNGY-ENGTPAWHP--GNQLDLGKLRLE 621 (642)
Q Consensus 555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~lt~~~~-~~~~~~~s~--dg~~~~~~~~~~ 621 (642)
.|+..+.++ .|.+|+...++. ..+..+.. .+..++|+| |+++|++....+
T Consensus 263 ~l~s~~~dg-----------------~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 263 LIASVGADG-----------------VLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp CEEEEETTS-----------------CEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred EEEEEeCCC-----------------EEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence 566555543 567777666532 22233443 567889999 788888765544
No 140
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.60 E-value=2.3e-13 Score=140.98 Aligned_cols=287 Identities=12% Similarity=0.048 Sum_probs=173.8
Q ss_pred cccCCCccCCceeCC-CCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee-------------cCC---Ccce
Q 039497 135 LTPYGVVDYSPSVSY-SGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC-------------ERG---GWPT 197 (642)
Q Consensus 135 lt~~~~~~~~~~~SP-DG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-------------~~~---~~~~ 197 (642)
+..+.......+||| ||++||....++ .|.+|++.+++...... .+. ..+.
T Consensus 39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 106 (408)
T 4a11_B 39 ERIHGGGINTLDIEPVEGRYMLSGGSDG------------VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQ 106 (408)
T ss_dssp CCCCSSCEEEEEECTTTCCEEEEEETTS------------CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEE
T ss_pred eeccCCcEEEEEEecCCCCEEEEEcCCC------------eEEEEECCCCcccceEeccccccccccccccCCCcEEEEE
Confidence 344555567789999 999999987665 69999999886543332 011 2459
Q ss_pred Eee-CCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeec---CCcEEEEEEeccCCceeeEEE
Q 039497 198 WSG-DSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFH---DGKRLAVATRRKNRNFRHIEI 273 (642)
Q Consensus 198 wsp-dg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp---dG~~l~~~~~~~~~~~~~i~~ 273 (642)
|+| ++.++++. ..+| .|..+++.++ ...........+....++| ++..++.....+ .+.+
T Consensus 107 ~~~~~~~~l~s~-~~d~--~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~ 170 (408)
T 4a11_B 107 WYPHDTGMFTSS-SFDK--TLKVWDTNTL--------QTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGP-----KVQL 170 (408)
T ss_dssp ECTTCTTCEEEE-ETTS--EEEEEETTTT--------EEEEEEECSSCEEEEEECSSCSSCCEEEEEESSS-----SEEE
T ss_pred EccCCCcEEEEE-eCCC--eEEEeeCCCC--------ccceeccCCCceeeeEeecCCCCCcEEEEEcCCC-----eEEE
Confidence 999 55677766 4567 4555566666 2333322333445556655 555777754443 7888
Q ss_pred EEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCc
Q 039497 274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN 353 (642)
Q Consensus 274 ~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 353 (642)
||+..... . ..+.... .....+.|+|+++++++... ..
T Consensus 171 ~d~~~~~~------------------------------~---~~~~~~~-------~~v~~~~~~~~~~~ll~~~~--~d 208 (408)
T 4a11_B 171 CDLKSGSC------------------------------S---HILQGHR-------QEILAVSWSPRYDYILATAS--AD 208 (408)
T ss_dssp EESSSSCC------------------------------C---EEECCCC-------SCEEEEEECSSCTTEEEEEE--TT
T ss_pred EeCCCcce------------------------------e---eeecCCC-------CcEEEEEECCCCCcEEEEEc--CC
Confidence 88732110 0 0000000 01124589999996444332 23
Q ss_pred eeEEEEECCCCCe--eEE----------------eecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCC
Q 039497 354 AGIKIAKSDGSKR--WTL----------------IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPS 415 (642)
Q Consensus 354 ~~l~~~d~~~~~~--~~l----------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 415 (642)
..|.++|+..+.. ..+ .....+..+.|+|+++.|+..+. ++.+++|++..
T Consensus 209 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------dg~i~vwd~~~----- 276 (408)
T 4a11_B 209 SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT-------DNRMRLWNSSN----- 276 (408)
T ss_dssp SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET-------TSCEEEEETTT-----
T ss_pred CcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC-------CCeEEEEECCC-----
Confidence 5678888865541 111 01345778999999999988874 67899999865
Q ss_pred CCCCCCccccceEEccc----cCCCCccCcEE-CCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccccee
Q 039497 416 DDNNREEIPCDVKILTK----EETGNNAFPSC-SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS 490 (642)
Q Consensus 416 ~~~~~~~~~~~~~~l~~----~~~~~~~~~~~-SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~ 490 (642)
+. ....+.. .. .......+ ...+..+++.... ..|.+||+.+++. +..+..+...+..++
T Consensus 277 ---~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~i~v~d~~~~~~---~~~~~~~~~~v~~~~ 341 (408)
T 4a11_B 277 ---GE-----NTLVNYGKVCNNS-KKGLKFTVSCGCSSEFVFVPYG---STIAVYTVYSGEQ---ITMLKGHYKTVDCCV 341 (408)
T ss_dssp ---CC-----BCCCCCCCCCCCC-SSCCCCEECCSSSSCEEEEEET---TEEEEEETTTCCE---EEEECCCSSCEEEEE
T ss_pred ---Cc-----cceeccccccccc-cccceeEEecCCCceEEEEecC---CEEEEEECcCCcc---eeeeccCCCeEEEEE
Confidence 11 1111110 00 11111222 2234455555532 3899999999886 677777777888899
Q ss_pred EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE
Q 039497 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526 (642)
Q Consensus 491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 526 (642)
|+|||++|+..+.++. |++|++..++..
T Consensus 342 ~s~~~~~l~s~~~dg~--------i~iw~~~~~~~~ 369 (408)
T 4a11_B 342 FQSNFQELYSGSRDCN--------ILAWVPSLYEPV 369 (408)
T ss_dssp EETTTTEEEEEETTSC--------EEEEEECC----
T ss_pred EcCCCCEEEEECCCCe--------EEEEeCCCCCcc
Confidence 9999999998887765 999999876543
No 141
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.2e-12 Score=131.70 Aligned_cols=280 Identities=15% Similarity=0.050 Sum_probs=163.0
Q ss_pred ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceee-CC-CCCccccceeecCCcEEEEEEeccCCceeeEEE
Q 039497 196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRV-TP-PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI 273 (642)
Q Consensus 196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~ 273 (642)
..|+|+ ++++. ..++...||.+...... ....+ .. +...+..++|+|+|++|+....++ .+.+
T Consensus 20 ~~~s~~--~las~-~~D~~i~lw~~~~~~~~-------~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~-----~v~i 84 (330)
T 2hes_X 20 FDFSQG--ILATG-STDRKIKLVSVKYDDFT-------LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS-----TVSI 84 (330)
T ss_dssp EEEETT--EEEEE-ESSSCEEEEECSSSCCE-------EEEEECTTCCCSCEEEEEECTTSSEEEEEETTS-----CEEE
T ss_pred eccCCC--EEEEE-cCCCEEEEEEecCCCeE-------EEEEEecCCccCCEEEEEECCCCCEEEEEeCCC-----cEEE
Confidence 477887 56655 56786677655432221 22333 23 555688899999999988865544 7899
Q ss_pred EEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCc
Q 039497 274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN 353 (642)
Q Consensus 274 ~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 353 (642)
||+....... ...+ .+..+.+. ........|+|+|++|+..+. .
T Consensus 85 w~~~~~~~~~-------~~~~-------------------~~~~~~~h-------~~~V~~v~~sp~g~~las~s~---D 128 (330)
T 2hes_X 85 WAKEESADRT-------FEMD-------------------LLAIIEGH-------ENEVKGVAWSNDGYYLATCSR---D 128 (330)
T ss_dssp EEC--------------CCCE-------------------EEEEEC-----------CEEEEEECTTSCEEEEEET---T
T ss_pred EEcccCcCcc-------ccce-------------------eEEEEcCC-------CCcEEEEEECCCCCEEEEEeC---C
Confidence 9873211000 0000 00001110 011135689999998888664 3
Q ss_pred eeEEEEECC-CCCe-eEEe--e--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccce
Q 039497 354 AGIKIAKSD-GSKR-WTLI--K--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDV 427 (642)
Q Consensus 354 ~~l~~~d~~-~~~~-~~l~--~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 427 (642)
..|.++++. .+.. ..+. . ...+..+.|+|+++.|+..+. ++.+++|++.. +..+ ..
T Consensus 129 ~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~-------D~~i~iW~~~~--------~~~~---~~ 190 (330)
T 2hes_X 129 KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY-------DDTVRIWKDYD--------DDWE---CV 190 (330)
T ss_dssp SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEET-------TSCEEEEEEET--------TEEE---EE
T ss_pred CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcC-------CCeEEEEECCC--------CCee---EE
Confidence 567777874 3221 2221 1 456889999999999888774 78999999865 1100 33
Q ss_pred EEccccCCCCccCcEECCC--CCeEEEEeCCCCceeEEEEECCCCccc-----cceeeCCC-CCCcccceeEecCCCEEE
Q 039497 428 KILTKEETGNNAFPSCSPD--GKFLVFRSGRSGHKNLFVLDAVNGEFN-----GDIRQLTD-GPWIDTMPSWSPKGDLIA 499 (642)
Q Consensus 428 ~~l~~~~~~~~~~~~~SpD--g~~l~~~~~~~g~~~l~~~d~~~g~~~-----~~~~~l~~-~~~~~~~~~~spdG~~l~ 499 (642)
..+..+. ..+..+.|+|+ +..|+..+. ++ .|.+|++.++... .....+.. +...+..++|++++ .|+
T Consensus 191 ~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~-D~--~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~ 265 (330)
T 2hes_X 191 AVLNGHE-GTVWSSDFDKTEGVFRLCSGSD-DS--TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIA 265 (330)
T ss_dssp EEECCCS-SCEEEEEECCSSSSCEEEEEET-TS--CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEE
T ss_pred EEccCCC-CcEEEEEecCCCCeeEEEEEeC-CC--eEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEE
Confidence 4455555 67888999999 566665553 33 5667776543100 00223333 45567788999776 566
Q ss_pred EEecCCCCCCCCceeEEEEeCCCCceEEeee--cCCCCCCCcccccccceEEcC--CCCEEEEEEecC
Q 039497 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV--AGPEGSGDVDRERINHVCFSA--DGEWLLFTANLG 563 (642)
Q Consensus 500 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~S~--Dg~~l~~~~~~~ 563 (642)
..+.++. |.+|+..+++.+.+.. ..+.. ..+..++|+| |++.|+..+.++
T Consensus 266 s~~~dg~--------v~iw~~~~~~~~~~~~~~~~h~~------~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 266 SVGADGV--------LAVYEEVDGEWKVFAKRALCHGV------YEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp EEETTSC--------EEEEEEETTEEEEEEEESCTTTT------SCEEEEEEC-----CCEEEEETTS
T ss_pred EEeCCCE--------EEEEEcCCCceEEEecccccccc------ceEEEEEEecCCCceEEEEecCCC
Confidence 6666654 8889987765433322 12211 0356789999 788887777664
No 142
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.60 E-value=5e-14 Score=144.65 Aligned_cols=253 Identities=8% Similarity=0.056 Sum_probs=153.1
Q ss_pred CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEE
Q 039497 194 GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI 273 (642)
Q Consensus 194 ~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~ 273 (642)
..++|+|||+++++. ..++...||.+...... ....+..+...+..++|+|+|++|+....++ .+.+
T Consensus 15 ~~~~~s~~g~~l~~~-~~d~~i~iw~~~~~~~~-------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~-----~v~v 81 (377)
T 3dwl_C 15 YEHAFNSQRTEFVTT-TATNQVELYEQDGNGWK-------HARTFSDHDKIVTCVDWAPKSNRIVTCSQDR-----NAYV 81 (377)
T ss_dssp SCCEECSSSSEEECC-CSSSCBCEEEEETTEEE-------ECCCBCCCSSCEEEEEECTTTCCEEEEETTS-----SEEE
T ss_pred EEEEECCCCCEEEEe-cCCCEEEEEEccCCceE-------EEEEEecCCceEEEEEEeCCCCEEEEEeCCC-----eEEE
Confidence 357999999888776 45787777776532101 3445566666788899999999998866544 7888
Q ss_pred EEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCc
Q 039497 274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN 353 (642)
Q Consensus 274 ~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 353 (642)
||+...... . ....+..... ....+.|+|+|+.|+.... .
T Consensus 82 wd~~~~~~~-----------------------------~-~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~---d 121 (377)
T 3dwl_C 82 YEKRPDGTW-----------------------------K-QTLVLLRLNR-------AATFVRWSPNEDKFAVGSG---A 121 (377)
T ss_dssp C------CC-----------------------------C-CEEECCCCSS-------CEEEEECCTTSSCCEEEES---S
T ss_pred EEcCCCCce-----------------------------e-eeeEecccCC-------ceEEEEECCCCCEEEEEec---C
Confidence 887332100 0 0000000001 1124588999998888664 3
Q ss_pred eeEEEEECCCCC----eeEEe--ecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCC-----CCCCCc
Q 039497 354 AGIKIAKSDGSK----RWTLI--KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD-----DNNREE 422 (642)
Q Consensus 354 ~~l~~~d~~~~~----~~~l~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~ 422 (642)
..|.+++++.++ ...+. ....+..+.|+|+++.|+..+. ++.+++|++.. .... .+-+..
T Consensus 122 ~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-------d~~i~iwd~~~--~~~~~~~~~~~~~~~ 192 (377)
T 3dwl_C 122 RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA-------DRKAYVLSAYV--RDVDAKPEASVWGSR 192 (377)
T ss_dssp SCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES-------SSCEEEEEECC--SSCC-CCCSCSSCSC
T ss_pred CeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC-------CCEEEEEEEEe--cccCCCccccccccc
Confidence 567888887765 23343 2556889999999999988874 68899999853 1000 000000
Q ss_pred c--ccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccc-cceeeCCCCCCcccceeEecCCCEEE
Q 039497 423 I--PCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN-GDIRQLTDGPWIDTMPSWSPKGDLIA 499 (642)
Q Consensus 423 ~--~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~-~~~~~l~~~~~~~~~~~~spdG~~l~ 499 (642)
+ ......+ .+. ..+..+.|+|||++|+..+.+ ..|.+||+.+++.+ ..+..+..+...+..+.|+|||++|+
T Consensus 193 ~~~~~~~~~~-~~~-~~v~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 267 (377)
T 3dwl_C 193 LPFNTVCAEY-PSG-GWVHAVGFSPSGNALAYAGHD---SSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVA 267 (377)
T ss_dssp CCEEEEEECC-CCS-SSEEEEEECTTSSCEEEEETT---TEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEE
T ss_pred cchhhhhhcc-cCC-ceEEEEEECCCCCEEEEEeCC---CcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEE
Confidence 0 0012222 333 567889999999999888743 37889998877630 00133445556678899999999877
Q ss_pred EEecCCCCCCCCceeEEEEeCCC
Q 039497 500 FSSNRHNPDNVEAFSLYVIKPDG 522 (642)
Q Consensus 500 ~~~~~~~~~~~~~~~l~~~d~~~ 522 (642)
..+.+. +.+|+...
T Consensus 268 ~~~~~~---------~~~~~~~~ 281 (377)
T 3dwl_C 268 AGYNYS---------PILLQGNE 281 (377)
T ss_dssp EESSSS---------EEEECCCC
T ss_pred EEcCCc---------EEEEEeCC
Confidence 665443 56777653
No 143
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.60 E-value=4.8e-13 Score=135.44 Aligned_cols=282 Identities=12% Similarity=0.071 Sum_probs=158.7
Q ss_pred CCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee-cC---CCcceEeeCCeEEEEEecCCCceEEE
Q 039497 143 YSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC-ER---GGWPTWSGDSTIYFHRQADDGWWSIF 218 (642)
Q Consensus 143 ~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~---~~~~~wspdg~~~~~~~~~~g~~~l~ 218 (642)
..++++++++.++...... .|++|++.+++..+... .. ...++|+|||+.+|+....++ .|+
T Consensus 3 ~g~~~~~~~~~~v~~~~~~------------~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~--~i~ 68 (349)
T 1jmx_B 3 TGPALKAGHEYMIVTNYPN------------NLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG--DIY 68 (349)
T ss_dssp -CCCCCTTCEEEEEEETTT------------EEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTT--EEE
T ss_pred ccccccCCCEEEEEeCCCC------------eEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCC--cEE
Confidence 4578899998888776555 79999999887655443 32 235699999976655534444 788
Q ss_pred EEecCCCcccccCCccceeeCCC------CCccccceeecCCcEEEEEEecc-------CCceeeEEEEEeecCCCCccc
Q 039497 219 RVSFPENLEFLGFPIAPTRVTPP------GVHCFTPAAFHDGKRLAVATRRK-------NRNFRHIEIYDLTLNPNFHHY 285 (642)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~SpdG~~l~~~~~~~-------~~~~~~i~~~d~~~~~~~~~~ 285 (642)
.+++.++. ....+... +.....++|||||++|++..... +.....+.+||+......
T Consensus 69 ~~d~~t~~-------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--- 138 (349)
T 1jmx_B 69 GIDLDTCK-------NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA--- 138 (349)
T ss_dssp EEETTTTE-------EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB---
T ss_pred EEeCCCCc-------EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc---
Confidence 88988773 22233222 12356788999999999876430 000125666665221000
Q ss_pred CCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCC
Q 039497 286 NPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK 365 (642)
Q Consensus 286 ~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~ 365 (642)
...... ........+.|+|||+ +++.. ..|+++|+.+++
T Consensus 139 -------------------------~~~~~~----------~~~~~~~~~~~s~dg~-l~~~~-----~~i~~~d~~~~~ 177 (349)
T 1jmx_B 139 -------------------------KPVRTF----------PMPRQVYLMRAADDGS-LYVAG-----PDIYKMDVKTGK 177 (349)
T ss_dssp -------------------------CCSEEE----------ECCSSCCCEEECTTSC-EEEES-----SSEEEECTTTCC
T ss_pred -------------------------ceeeec----------cCCCcccceeECCCCc-EEEcc-----CcEEEEeCCCCc
Confidence 000000 0001123456999999 55432 349999998877
Q ss_pred eeEEeecCC--------------------------ceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCC
Q 039497 366 RWTLIKDRT--------------------------AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNN 419 (642)
Q Consensus 366 ~~~l~~~~~--------------------------~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 419 (642)
......... ...+.+++|+...... ......++.++. . +
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~~~~~~~~~~--~-----~ 242 (349)
T 1jmx_B 178 YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT--------ADLLYGYLSVDL--K-----T 242 (349)
T ss_dssp EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC--------CEEEEEEEEEET--T-----T
T ss_pred eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc--------cccceeEEEEec--c-----C
Confidence 655433111 1112233332111000 001112222333 1 1
Q ss_pred CCccccceEEcc--ccCCCCccCcEECC-CCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCC
Q 039497 420 REEIPCDVKILT--KEETGNNAFPSCSP-DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496 (642)
Q Consensus 420 ~~~~~~~~~~l~--~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~ 496 (642)
+ +.+.+. ... .....+.||| ||++|+.. ...|++||+.+++. +..+.. ......++|+|||+
T Consensus 243 ~-----~~~~~~~~~~~-~~~~~~~~sp~dg~~l~~~-----~~~v~~~d~~~~~~---~~~~~~-~~~~~~~~~s~dg~ 307 (349)
T 1jmx_B 243 G-----KTHTQEFADLT-ELYFTGLRSPKDPNQIYGV-----LNRLAKYDLKQRKL---IKAANL-DHTYYCVAFDKKGD 307 (349)
T ss_dssp C-----CEEEEEEEECS-SCEEEEEECSSCTTEEEEE-----ESEEEEEETTTTEE---EEEEEC-SSCCCEEEECSSSS
T ss_pred C-----cEEecccccCC-CcceeeEecCCCCCEEEEE-----cCeEEEEECccCeE---EEEEcC-CCCccceEECCCCC
Confidence 1 222221 111 3456789999 99998877 23899999998885 344432 23456789999999
Q ss_pred EEEEEecCCCCCCCCceeEEEEeCCCCceEE
Q 039497 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR 527 (642)
Q Consensus 497 ~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 527 (642)
+|++.... ..|++||+++++...
T Consensus 308 ~l~~~~~~--------~~v~v~d~~~~~~~~ 330 (349)
T 1jmx_B 308 KLYLGGTF--------NDLAVFNPDTLEKVK 330 (349)
T ss_dssp CEEEESBS--------SEEEEEETTTTEEEE
T ss_pred EEEEecCC--------CeEEEEeccccceee
Confidence 98885433 349999998776543
No 144
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.60 E-value=1.9e-12 Score=129.14 Aligned_cols=271 Identities=14% Similarity=0.128 Sum_probs=172.8
Q ss_pred ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeC--CCCCccccceeecCCcEEEEEEeccCCceeeEEE
Q 039497 196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVT--PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI 273 (642)
Q Consensus 196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~ 273 (642)
++||+++ +++++. ++ .|..+|..+++ ....+. .+...+..++|+|+|++|+....++ .+.+
T Consensus 31 l~WS~~~-~lAvg~--D~--tV~iWd~~tg~-------~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg-----~v~i 93 (318)
T 4ggc_A 31 VDWSSGN-VLAVAL--DN--SVYLWSASSGD-------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA-----EVQL 93 (318)
T ss_dssp EEECTTS-EEEEEE--TT--EEEEEETTTCC-------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTS-----EEEE
T ss_pred EEECCCC-EEEEEe--CC--EEEEEECCCCC-------EEEEEEecCCCCeEEEEEECCCCCEEEEEECCC-----cEEE
Confidence 5999997 555542 56 56667877773 223333 3455678899999999999865444 8899
Q ss_pred EEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCc
Q 039497 274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN 353 (642)
Q Consensus 274 ~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 353 (642)
||+.. ++.+... .........++++++.++.... .
T Consensus 94 w~~~~--------------~~~~~~~----------------------------~~h~~~~~~~~~~~~~l~s~~~---~ 128 (318)
T 4ggc_A 94 WDVQQ--------------QKRLRNM----------------------------TSHSARVGSLSWNSYILSSGSR---S 128 (318)
T ss_dssp EETTT--------------TEEEEEE----------------------------ECCSSCEEEEEEETTEEEEEET---T
T ss_pred eecCC--------------ceeEEEe----------------------------cCccceEEEeecCCCEEEEEec---C
Confidence 98732 1111111 0011112245666776666543 2
Q ss_pred eeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497 354 AGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL 430 (642)
Q Consensus 354 ~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 430 (642)
..+..++........... ...+....++++++.|+.... ++.+++|++.. +. .........
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-------d~~i~iwd~~~--------~~-~~~~~~~~~ 192 (318)
T 4ggc_A 129 GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN-------DNLVNVWPSAP--------GE-GGWVPLQTF 192 (318)
T ss_dssp SEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET-------TSCEEEEESSC--------BT-TBSCCSEEE
T ss_pred CceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec-------CcceeEEECCC--------Cc-ccccceeee
Confidence 455555655544332222 556778899999999887764 78899999865 11 100012222
Q ss_pred cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCC
Q 039497 431 TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV 510 (642)
Q Consensus 431 ~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~ 510 (642)
.... ..+....++|++..++..........|.+|+...+.. .........+....|+|+++.++..+...
T Consensus 193 ~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~sg~~----- 262 (318)
T 4ggc_A 193 TQHQ-GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC----LSAVDAHSQVCSILWSPHYKELISGHGFA----- 262 (318)
T ss_dssp CCCC-SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE----EEEEECSSCEEEEEEETTTTEEEEEECTT-----
T ss_pred cccC-CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc----cccccceeeeeeeeecccccceEEEEEcC-----
Confidence 3333 4567788999988877655444556889999987764 33334445567789999999998876432
Q ss_pred CceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 511 EAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 511 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
...|++||+.+++...... ++.+ .+..++|||||++|+..+.++
T Consensus 263 -d~~i~iwd~~~~~~~~~l~-gH~~-------~V~~l~~spdg~~l~S~s~D~ 306 (318)
T 4ggc_A 263 -QNQLVIWKYPTMAKVAELK-GHTS-------RVLSLTMSPDGATVASAAADE 306 (318)
T ss_dssp -TCCEEEEETTTCCEEEEEC-CCSS-------CEEEEEECTTSSCEEEEETTT
T ss_pred -CCEEEEEECCCCcEEEEEc-CCCC-------CEEEEEEcCCCCEEEEEecCC
Confidence 1239999998877654433 4555 688999999999998877665
No 145
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.59 E-value=1.2e-12 Score=133.82 Aligned_cols=272 Identities=9% Similarity=-0.040 Sum_probs=152.3
Q ss_pred eEEEEccCCceEeccc----CCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEec-CCCceeEee-cC-C-
Q 039497 122 LYSTDLKASKFTRLTP----YGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQES-DPNKRVIVC-ER-G- 193 (642)
Q Consensus 122 l~~~~~~~~~~~~lt~----~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~l~~-~~-~- 193 (642)
+|.++.++|+.+.+.. ........+|||||++|+.+..+ .|.+|++. +|+..++.. .. +
T Consensus 18 ~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-------------~v~~~~~~~~g~~~~~~~~~~~g~ 84 (365)
T 1jof_A 18 TVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-------------KWSSFAVKSPTEIVHEASHPIGGH 84 (365)
T ss_dssp EEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-------------EEEEEEEEETTEEEEEEEEECCSS
T ss_pred EEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-------------eEEEEEECCCCCEEEeeEeecCCC
Confidence 4445567787766643 12234568899999998766531 58888886 776554433 11 2
Q ss_pred -CcceEeeCCeE--EEEEe-------c-----CCCceEEEEEecCCCcccccCCccceeeC----CCCCccccceeecCC
Q 039497 194 -GWPTWSGDSTI--YFHRQ-------A-----DDGWWSIFRVSFPENLEFLGFPIAPTRVT----PPGVHCFTPAAFHDG 254 (642)
Q Consensus 194 -~~~~wspdg~~--~~~~~-------~-----~~g~~~l~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~SpdG 254 (642)
..++|+|||+. +++.+ . .+|...+|.++..+. ....+. ........++|||||
T Consensus 85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~--------~~~~~~~~~~~~~~~~~~~~~spdG 156 (365)
T 1jof_A 85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK--------LEKNVQNYEYQENTGIHGMVFDPTE 156 (365)
T ss_dssp GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC--------EEEEEEEEECCTTCCEEEEEECTTS
T ss_pred CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCc--------CcceEeeEEeCCCCcceEEEECCCC
Confidence 23599999974 33432 1 466666776654443 222222 123346678899999
Q ss_pred cEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCc
Q 039497 255 KRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSF 334 (642)
Q Consensus 255 ~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (642)
++|+++... ...|++|++.. +|+....... ..... ......
T Consensus 157 ~~l~~~~~~----~~~v~~~~~~~-------------~g~~~~~~~~---------------~~~~~-------g~~p~~ 197 (365)
T 1jof_A 157 TYLYSADLT----ANKLWTHRKLA-------------SGEVELVGSV---------------DAPDP-------GDHPRW 197 (365)
T ss_dssp SEEEEEETT----TTEEEEEEECT-------------TSCEEEEEEE---------------ECSST-------TCCEEE
T ss_pred CEEEEEcCC----CCEEEEEEECC-------------CCCEEEeeeE---------------ecCCC-------CCCCCE
Confidence 988765322 23688887721 1211100000 00000 001124
Q ss_pred cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeE----Eee--cC------------Cceeee-eecCCCEEEEEEcCCC
Q 039497 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWT----LIK--DR------------TAFYNS-WSPTEKHVIYTSTGPI 395 (642)
Q Consensus 335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~----l~~--~~------------~~~~~~-~spdg~~l~~~~~~~~ 395 (642)
+.|+|||++|++....++...+|.++.++++... +.. .+ ....+. |||||++|+.......
T Consensus 198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~ 277 (365)
T 1jof_A 198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK 277 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCC
Confidence 5899999988777654444455555655555321 221 11 356788 9999999977654200
Q ss_pred cccCCCeEEEEEEEeecCCCCCCCCCccccceEE----ccccCCCCccCcEECC---CCCeEEEEeCCCCceeEEEEECC
Q 039497 396 FQSERATVQIARVSFQLDPSDDNNREEIPCDVKI----LTKEETGNNAFPSCSP---DGKFLVFRSGRSGHKNLFVLDAV 468 (642)
Q Consensus 396 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~Sp---Dg~~l~~~~~~~g~~~l~~~d~~ 468 (642)
. ...+.+.+|+++. .+ .... +.... .....++||| ||++|+++...++ .|.+|+++
T Consensus 278 ~-~~~~~i~v~~~~~--------~g-----~~~~~~~~~~~~~-~~~~~~a~sp~~~dg~~l~v~~~~~~--~v~v~~~~ 340 (365)
T 1jof_A 278 F-ELQGYIAGFKLRD--------CG-----SIEKQLFLSPTPT-SGGHSNAVSPCPWSDEWMAITDDQEG--WLEIYRWK 340 (365)
T ss_dssp T-TSCCEEEEEEECT--------TS-----CEEEEEEEEECSS-CCTTCCCEEECTTCTTEEEEECSSSC--EEEEEEEE
T ss_pred C-CCCCeEEEEEECC--------CC-----CEEEeeeeeecCC-CCcccceecCCCcCCCEEEEEEcCCC--eEEEEEEc
Confidence 0 0012788998864 23 2332 21122 3456789999 8999988875444 45555554
Q ss_pred CC
Q 039497 469 NG 470 (642)
Q Consensus 469 ~g 470 (642)
..
T Consensus 341 ~~ 342 (365)
T 1jof_A 341 DE 342 (365)
T ss_dssp TT
T ss_pred hh
Confidence 33
No 146
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.2e-13 Score=143.55 Aligned_cols=191 Identities=7% Similarity=-0.005 Sum_probs=133.7
Q ss_pred CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc--ccCCCCccCcEECCCCCeEE
Q 039497 374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT--KEETGNNAFPSCSPDGKFLV 451 (642)
Q Consensus 374 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~SpDg~~l~ 451 (642)
.+..+.|+|||+.|+++.. .++.+++|++.. .. +. ....+. ... ..+..+.|+|||++|+
T Consensus 104 ~v~~~~~s~d~~~l~~~~~------~dg~v~iwd~~~--~~----~~-----~~~~~~~~~~~-~~v~~~~~sp~~~~l~ 165 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACAD------SDKSLLVFDVDK--TS----KN-----VLKLRKRFCFS-KRPNAISIAEDDTTVI 165 (450)
T ss_dssp CEEEEEECTTSSEEEEEEG------GGTEEEEEEECS--SS----SS-----CEEEEEEEECS-SCEEEEEECTTSSEEE
T ss_pred ceEEEEEcCCCCEEEEEEC------CCCeEEEEECcC--CC----Cc-----eeeeeecccCC-CCceEEEEcCCCCEEE
Confidence 4778999999999866663 378999999972 10 22 344443 223 5677899999999998
Q ss_pred EEeCCCCceeEEEEECCCCcccc-ceeeCCCCCCcccceeEecC---CCEEEEEecCCCCCCCCceeEEEEeCCCCceEE
Q 039497 452 FRSGRSGHKNLFVLDAVNGEFNG-DIRQLTDGPWIDTMPSWSPK---GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR 527 (642)
Q Consensus 452 ~~~~~~g~~~l~~~d~~~g~~~~-~~~~l~~~~~~~~~~~~spd---G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 527 (642)
..+. ...|++|++.+++... ....+..+...+..+.|+|| +++|+..+.++. |++||+.+++...
T Consensus 166 ~~~~---~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~--------i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 166 IADK---FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEH--------IKISHYPQCFIVD 234 (450)
T ss_dssp EEET---TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSC--------EEEEEESCTTCEE
T ss_pred EEeC---CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCc--------EEEEECCCCceee
Confidence 8864 3479999998776400 01144445566788899999 888888877654 9999998776554
Q ss_pred eeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce-eeccC---------
Q 039497 528 IHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL-RRLTW--------- 597 (642)
Q Consensus 528 l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~lt~--------- 597 (642)
....++.. .+..+.|+ ||++|+..+.++ .|.+||+..++. ..+..
T Consensus 235 ~~~~~h~~-------~v~~~~~s-d~~~l~s~~~d~-----------------~v~vwd~~~~~~~~~~~~~~~~~~~~~ 289 (450)
T 2vdu_B 235 KWLFGHKH-------FVSSICCG-KDYLLLSAGGDD-----------------KIFAWDWKTGKNLSTFDYNSLIKPYLN 289 (450)
T ss_dssp EECCCCSS-------CEEEEEEC-STTEEEEEESSS-----------------EEEEEETTTCCEEEEEECHHHHGGGCC
T ss_pred eeecCCCC-------ceEEEEEC-CCCEEEEEeCCC-----------------eEEEEECCCCcEeeeecchhhhhhhhh
Confidence 32334444 67889999 999998877554 789999887763 33321
Q ss_pred ----------------CCCCCCCcEEecCCceEEeec
Q 039497 598 ----------------NGYENGTPAWHPGNQLDLGKL 618 (642)
Q Consensus 598 ----------------~~~~~~~~~~s~dg~~~~~~~ 618 (642)
....+..+.|+|+++++++..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 326 (450)
T 2vdu_B 290 DQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV 326 (450)
T ss_dssp TTSBC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred hcccccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence 123345789999998886654
No 147
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.59 E-value=7.2e-13 Score=131.25 Aligned_cols=242 Identities=12% Similarity=0.106 Sum_probs=152.4
Q ss_pred CCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeec
Q 039497 239 TPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPV 318 (642)
Q Consensus 239 ~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~ 318 (642)
..+...+..++|+|||++|+....++ .+++||+.... ++ . +..+
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~-----~v~iw~~~~~~------------~~----------------~---~~~l 49 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDK-----TIKIFEVEGET------------HK----------------L---IDTL 49 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEBCSSC------------BC----------------C---CEEE
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCC-----EEEEEecCCCC------------cE----------------E---EEEE
Confidence 44555677889999999998865544 78899873210 00 0 0001
Q ss_pred cCCCceeEEeeeCCCccEEcCC--CCEEEEEecCCCceeEEEEECCCCCeeE---Ee-ecCCceeeeeecC--CCEEEEE
Q 039497 319 ASPVKELRMLRLNGSFPSFSPD--GGLIVFNHDFELNAGIKIAKSDGSKRWT---LI-KDRTAFYNSWSPT--EKHVIYT 390 (642)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~spd--g~~l~~~~~~~~~~~l~~~d~~~~~~~~---l~-~~~~~~~~~~spd--g~~l~~~ 390 (642)
.+.... .....|+++ |+.|+..+. ...|.++++.+++... +. ....+..+.|+|+ |+.|+..
T Consensus 50 ~gH~~~-------V~~v~~s~~~~g~~l~s~s~---D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~ 119 (297)
T 2pm7_B 50 TGHEGP-------VWRVDWAHPKFGTILASCSY---DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVA 119 (297)
T ss_dssp CCCSSC-------EEEEEECCGGGCSEEEEEET---TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred ccccCC-------eEEEEecCCCcCCEEEEEcC---CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEE
Confidence 111011 124478764 887777654 3567788887764222 22 1556889999998 8888877
Q ss_pred EcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCC-------------CCeEEEEeCCC
Q 039497 391 STGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD-------------GKFLVFRSGRS 457 (642)
Q Consensus 391 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD-------------g~~l~~~~~~~ 457 (642)
+. ++.+++|++.. ++.. ....+..+. ..+..+.|+|+ ++.|+..+.+
T Consensus 120 s~-------d~~v~~wd~~~--------~~~~---~~~~~~~h~-~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D- 179 (297)
T 2pm7_B 120 SS-------DGKVSVVEFKE--------NGTT---SPIIIDAHA-IGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD- 179 (297)
T ss_dssp ET-------TSEEEEEEBCS--------SSCB---CCEEEECCS-SCEEEEEECCCC------------CCEEEEEETT-
T ss_pred EC-------CCcEEEEEecC--------CCce---eeeeeeccc-CccceEeecCCcccccccCCCCCCcceEEEEcCC-
Confidence 64 78999999865 1110 123344444 56778899997 4677666532
Q ss_pred CceeEEEEECCCCccc-cceeeCCCCCCcccceeEecCC---CEEEEEecCCCCCCCCceeEEEEeCCCCc--e-EEeee
Q 039497 458 GHKNLFVLDAVNGEFN-GDIRQLTDGPWIDTMPSWSPKG---DLIAFSSNRHNPDNVEAFSLYVIKPDGSG--L-RRIHV 530 (642)
Q Consensus 458 g~~~l~~~d~~~g~~~-~~~~~l~~~~~~~~~~~~spdG---~~l~~~~~~~~~~~~~~~~l~~~d~~~~~--~-~~l~~ 530 (642)
..|.+||+.+++.. .....+..+...+..++|+|++ ++|+..+.++. |.+||++... . ..+..
T Consensus 180 --~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~--------v~iWd~~~~~~~~~~~~~~ 249 (297)
T 2pm7_B 180 --NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT--------CIIWTQDNEQGPWKKTLLK 249 (297)
T ss_dssp --SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC--------EEEEEESSTTSCCEEEESS
T ss_pred --CcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc--------EEEEEeCCCCCccceeeee
Confidence 36778887765510 0134566666778899999995 67777776654 8889887643 1 12221
Q ss_pred -cCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 531 -AGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 531 -~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
..+.. .+..++|+|||+.|+..+.++
T Consensus 250 ~~~~~~-------~v~~~~~s~~g~~las~~~D~ 276 (297)
T 2pm7_B 250 EEKFPD-------VLWRASWSLSGNVLALSGGDN 276 (297)
T ss_dssp SSCCSS-------CEEEEEECSSSCCEEEEETTS
T ss_pred cccCCC-------cEEEEEECCCCCEEEEEcCCC
Confidence 22333 567899999999998887765
No 148
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.59 E-value=3.8e-13 Score=137.09 Aligned_cols=275 Identities=10% Similarity=0.002 Sum_probs=173.4
Q ss_pred ecccCCCccCCceeCCC---CcEEEEEecCCCCCCCCCCCCeeeEEEEEecC-CCce-eEeecCC---CcceEeeCCeEE
Q 039497 134 RLTPYGVVDYSPSVSYS---GKFIAVASYESRPWPGEFHELNTDIVVFQESD-PNKR-VIVCERG---GWPTWSGDSTIY 205 (642)
Q Consensus 134 ~lt~~~~~~~~~~~SPD---G~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~-~l~~~~~---~~~~wspdg~~~ 205 (642)
.+..+.......+|||| |++||....++ .|.+|++.+ +... .....+. ..+.|+|++.++
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg------------~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 101 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWAN------------DVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 101 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTS------------EEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCC------------cEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEE
Confidence 34455556677899999 69999887665 799999987 4433 2222222 246999999888
Q ss_pred EEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCcccccee--ecCCcEEEEEEeccCCceeeEEEEEeecCCCCc
Q 039497 206 FHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAA--FHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFH 283 (642)
Q Consensus 206 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~ 283 (642)
++. ..+| .|..+++.++ ....+..+...+..++| +|+|++|+....++ .+.+||+......
T Consensus 102 ~s~-~~dg--~v~iwd~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~- 164 (368)
T 3mmy_A 102 FTA-SCDK--TAKMWDLSSN--------QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDK-----TLKFWDTRSSNPM- 164 (368)
T ss_dssp EEE-ETTS--EEEEEETTTT--------EEEEEEECSSCEEEEEEEECSSCEEEEEEETTS-----EEEEECSSCSSCS-
T ss_pred EEE-cCCC--cEEEEEcCCC--------CceeeccccCceEEEEEEeCCCCCEEEEccCCC-----cEEEEECCCCcEE-
Confidence 877 4567 5555666776 44555556667778888 89999888865544 7899987322100
Q ss_pred ccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCC
Q 039497 284 HYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG 363 (642)
Q Consensus 284 ~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~ 363 (642)
..... ......+.+.+..++.... ...+.++++..
T Consensus 165 ------------------------------~~~~~------------~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~ 199 (368)
T 3mmy_A 165 ------------------------------MVLQL------------PERCYCADVIYPMAVVATA---ERGLIVYQLEN 199 (368)
T ss_dssp ------------------------------EEEEC------------SSCEEEEEEETTEEEEEEG---GGCEEEEECSS
T ss_pred ------------------------------EEEec------------CCCceEEEecCCeeEEEeC---CCcEEEEEecc
Confidence 00000 0001122222334444332 35677777766
Q ss_pred CCeeEEee----cCCceeeeeecCCCE----EEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCC
Q 039497 364 SKRWTLIK----DRTAFYNSWSPTEKH----VIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEET 435 (642)
Q Consensus 364 ~~~~~l~~----~~~~~~~~~spdg~~----l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 435 (642)
........ ........+.++... ++..+ .++.+.+|++.. ... ......+..+..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~dg~i~i~~~~~--------~~~--~~~~~~~~~~~~ 262 (368)
T 3mmy_A 200 QPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS-------IEGRVAIHYINP--------PNP--AKDNFTFKCHRS 262 (368)
T ss_dssp SCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE-------TTSEEEEEESSC--------SCH--HHHSEEEECSEE
T ss_pred ccchhhhccccccCCCceEEEcccCCCCCCeEEEec-------CCCcEEEEecCC--------CCc--cccceeeeeeec
Confidence 54332222 233444555555443 66555 378899998865 110 002233332220
Q ss_pred -----------CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecC
Q 039497 436 -----------GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504 (642)
Q Consensus 436 -----------~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~ 504 (642)
..+..+.|+|||++|+..+.+ ..|.+||+.+++. +..+..+...+..++|+|||++|+..+.+
T Consensus 263 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d---g~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 263 NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSD---GRFSFWDKDARTK---LKTSEQLDQPISACCFNHNGNIFAYASSY 336 (368)
T ss_dssp C----CCCEEECCEEEEEECTTTCCEEEEETT---SCEEEEETTTTEE---EEECCCCSSCEEEEEECTTSSCEEEEECC
T ss_pred ccccccccccccceEEEEEecCCCEEEEEccC---CeEEEEECCCCcE---EEEecCCCCCceEEEECCCCCeEEEEecc
Confidence 147788999999999887743 4799999999886 67777777788899999999999999876
Q ss_pred C
Q 039497 505 H 505 (642)
Q Consensus 505 ~ 505 (642)
+
T Consensus 337 ~ 337 (368)
T 3mmy_A 337 D 337 (368)
T ss_dssp C
T ss_pred c
Confidence 5
No 149
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.59 E-value=1.5e-13 Score=140.17 Aligned_cols=224 Identities=14% Similarity=0.100 Sum_probs=155.5
Q ss_pred ccEEcCC----CCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeec-CCCEEEEEEcCCCcccCCCeEEEE
Q 039497 334 FPSFSPD----GGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSP-TEKHVIYTSTGPIFQSERATVQIA 406 (642)
Q Consensus 334 ~~~~spd----g~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~l~ 406 (642)
...|+|+ |+.|+.... ...|.++++.+++...... ...+..+.|+| +++.|+..+. ++.+++|
T Consensus 74 ~~~~~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~-------dg~i~iw 143 (366)
T 3k26_A 74 TCAWTYDSNTSHPLLAVAGS---RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK-------DHALRLW 143 (366)
T ss_dssp EEEEEECTTTCCEEEEEEET---TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEET-------TSCEEEE
T ss_pred EEEeccCCCCCCCEEEEecC---CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeC-------CCeEEEE
Confidence 4588998 556666543 3688899998877554443 66788999999 8888887764 7889999
Q ss_pred EEEeecCCCCCCCCCccccceEEc---cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC---
Q 039497 407 RVSFQLDPSDDNNREEIPCDVKIL---TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT--- 480 (642)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~--- 480 (642)
++.. +. ....+ ..+. ..+..+.|+|+|++|+..+.. ..|.+||+.+++. ...+.
T Consensus 144 d~~~--------~~-----~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~---~~~~~~~~ 203 (366)
T 3k26_A 144 NIQT--------DT-----LVAIFGGVEGHR-DEVLSADYDLLGEKIMSCGMD---HSLKLWRINSKRM---MNAIKESY 203 (366)
T ss_dssp ETTT--------TE-----EEEEECSTTSCS-SCEEEEEECTTSSEEEEEETT---SCEEEEESCSHHH---HHHHHHHH
T ss_pred Eeec--------Ce-----EEEEeccccccc-CceeEEEECCCCCEEEEecCC---CCEEEEECCCCcc---ccccceeE
Confidence 9854 11 33333 3344 678889999999999887743 3799999987654 22111
Q ss_pred -------------------------CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce----------
Q 039497 481 -------------------------DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL---------- 525 (642)
Q Consensus 481 -------------------------~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~---------- 525 (642)
.+...+..+.|+ +++|+..+.++. |.+||+.....
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~--------i~~wd~~~~~~~~~~~~~~~~ 273 (366)
T 3k26_A 204 DYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENA--------IVCWKPGKMEDDIDKIKPSES 273 (366)
T ss_dssp TCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSE--------EEEEEESSTTCCGGGCCTTCC
T ss_pred EecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCE--------EEEEeCCCccccccccccCCc
Confidence 144566778888 777777766553 89999876543
Q ss_pred --EEeee-cCCCCCCCcccccccceEEcCC--CCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce-----eec
Q 039497 526 --RRIHV-AGPEGSGDVDRERINHVCFSAD--GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL-----RRL 595 (642)
Q Consensus 526 --~~l~~-~~~~~~~~~~~~~~~~~~~S~D--g~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~l 595 (642)
..+.. ..+.. .+..+.|+|| |++|+..+.++ .|.+|++..+++ ..+
T Consensus 274 ~~~~~~~~~~~~~-------~v~~~~~s~~~~~~~l~~~~~dg-----------------~i~vwd~~~~~~~~~~~~~~ 329 (366)
T 3k26_A 274 NVTILGRFDYSQC-------DIWYMRFSMDFWQKMLALGNQVG-----------------KLYVWDLEVEDPHKAKCTTL 329 (366)
T ss_dssp CEEEEEEEECSSC-------CSSCCCCEECTTSSEEEEECTTS-----------------CEEEEECCSSSGGGCEEEEE
T ss_pred chheeccccccCC-------cEEEEEEcCCCCCcEEEEEecCC-----------------cEEEEECCCCCCccccceEE
Confidence 11211 12222 4678899999 99888776554 788899887642 245
Q ss_pred cCC--CCCCCCcEEecCCceEEeecCCC
Q 039497 596 TWN--GYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 596 t~~--~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
..+ ...+..++|+|+++++++....+
T Consensus 330 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg 357 (366)
T 3k26_A 330 THHKCGAAIRQTSFSRDSSILIAVCDDA 357 (366)
T ss_dssp CCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred cccccCCceEEEEeCCCCCeEEEEeCCC
Confidence 554 46678899999999998765544
No 150
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=6e-13 Score=136.31 Aligned_cols=244 Identities=12% Similarity=0.113 Sum_probs=159.1
Q ss_pred eeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEe
Q 039497 237 RVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLE 316 (642)
Q Consensus 237 ~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~ 316 (642)
.+..+...+..++|+|||++|+....++ .|.+||+.... ++. ..
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~~~------------~~~-------------------~~ 49 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDK-----TIKIFEVEGET------------HKL-------------------ID 49 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTS-----CEEEEEEETTE------------EEE-------------------EE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCC-----cEEEEecCCCc------------cee-------------------ee
Confidence 3445555688889999999988865443 78888873110 000 00
Q ss_pred eccCCCceeEEeeeCCCccEEcCC--CCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecC--CCEEE
Q 039497 317 PVASPVKELRMLRLNGSFPSFSPD--GGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPT--EKHVI 388 (642)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~spd--g~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spd--g~~l~ 388 (642)
.+..... ....+.|+++ ++.|+.... ...|.++++.+++...+.. ...+..+.|+|+ ++.|+
T Consensus 50 ~~~~h~~-------~v~~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 119 (379)
T 3jrp_A 50 TLTGHEG-------PVWRVDWAHPKFGTILASCSY---DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLL 119 (379)
T ss_dssp EECCCSS-------CEEEEEECCGGGCSEEEEEET---TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred EecCCCC-------cEEEEEeCCCCCCCEEEEecc---CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEE
Confidence 0000001 1124578877 888877654 2567777887775323222 567889999999 89888
Q ss_pred EEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECC-------------CCCeEEEEeC
Q 039497 389 YTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSP-------------DGKFLVFRSG 455 (642)
Q Consensus 389 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-------------Dg~~l~~~~~ 455 (642)
.... ++.+.+|++.. .... ....+..+. ..+..+.|+| |++.|+..+.
T Consensus 120 ~~~~-------d~~i~v~d~~~--------~~~~---~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (379)
T 3jrp_A 120 VASS-------DGKVSVVEFKE--------NGTT---SPIIIDAHA-IGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 180 (379)
T ss_dssp EEET-------TSEEEEEECCT--------TSCC---CEEEEECCT-TCEEEEEECCCC----------CTTCEEEEEET
T ss_pred EecC-------CCcEEEEecCC--------CCce---eeEEecCCC-CceEEEEEcCccccccccccCCCCCCEEEEEeC
Confidence 8874 78999999865 2111 233344444 6778899999 6888887774
Q ss_pred CCCceeEEEEECCCCccc-cceeeCCCCCCcccceeEecC---CCEEEEEecCCCCCCCCceeEEEEeCCCCc---eEEe
Q 039497 456 RSGHKNLFVLDAVNGEFN-GDIRQLTDGPWIDTMPSWSPK---GDLIAFSSNRHNPDNVEAFSLYVIKPDGSG---LRRI 528 (642)
Q Consensus 456 ~~g~~~l~~~d~~~g~~~-~~~~~l~~~~~~~~~~~~spd---G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~---~~~l 528 (642)
+ ..|++||+.+++.. .....+..+...+..++|+|+ +++|+..+.++. |.+||+..+. ...+
T Consensus 181 d---g~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~--------i~iwd~~~~~~~~~~~~ 249 (379)
T 3jrp_A 181 D---NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT--------CIIWTQDNEQGPWKKTL 249 (379)
T ss_dssp T---SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC--------EEEEEESSTTSCCEEEE
T ss_pred C---CeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE--------EEEEeCCCCCccceeee
Confidence 3 37888888766530 012345556667888999999 888888877664 8999998764 2222
Q ss_pred e-ecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 529 H-VAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 529 ~-~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
. ...... .+..+.|+|||++|+..+.++
T Consensus 250 ~~~~~~~~-------~v~~~~~s~~g~~l~~~~~dg 278 (379)
T 3jrp_A 250 LKEEKFPD-------VLWRASWSLSGNVLALSGGDN 278 (379)
T ss_dssp SSSSCCSS-------CEEEEEECSSSCCEEEEESSS
T ss_pred eccccCCC-------cEEEEEEcCCCCEEEEecCCC
Confidence 2 212333 567899999999998887765
No 151
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.57 E-value=4e-12 Score=134.38 Aligned_cols=298 Identities=11% Similarity=0.044 Sum_probs=189.1
Q ss_pred eEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEe
Q 039497 197 TWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL 276 (642)
Q Consensus 197 ~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~ 276 (642)
.+..++.++++. ..+|...+ ++..++. ....+..+...+..++|+|++ .|+....++ .+.+||+
T Consensus 127 ~~~~~~~~l~sg-s~dg~i~v--wd~~~~~-------~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg-----~i~vwd~ 190 (464)
T 3v7d_B 127 CLQFEDNYVITG-ADDKMIRV--YDSINKK-------FLLQLSGHDGGVWALKYAHGG-ILVSGSTDR-----TVRVWDI 190 (464)
T ss_dssp EEEEETTEEEEE-ETTSCEEE--EETTTTE-------EEEEECCCSSCEEEEEECSTT-EEEEEETTS-----CEEEEET
T ss_pred EEEECCCEEEEE-cCCCcEEE--EECCCCc-------EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCC-----CEEEEEC
Confidence 455566777776 56775444 5666663 445666677778889999998 566654443 7899987
Q ss_pred ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEc--CCCCEEEEEecCCCce
Q 039497 277 TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFS--PDGGLIVFNHDFELNA 354 (642)
Q Consensus 277 ~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--pdg~~l~~~~~~~~~~ 354 (642)
... +.+... ......+ ....|+ ++++.|+..+. ..
T Consensus 191 ~~~--------------~~~~~~-------------------~~h~~~v-------~~l~~~~~~~~~~l~s~s~---d~ 227 (464)
T 3v7d_B 191 KKG--------------CCTHVF-------------------EGHNSTV-------RCLDIVEYKNIKYIVTGSR---DN 227 (464)
T ss_dssp TTT--------------EEEEEE-------------------CCCSSCE-------EEEEEEESSSCEEEEEEET---TS
T ss_pred CCC--------------cEEEEE-------------------CCCCCcc-------EEEEEecCCCCCEEEEEcC---CC
Confidence 321 111110 0000011 112333 56666666543 24
Q ss_pred eEEEEECCCCCeeE-----------------------EeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 355 GIKIAKSDGSKRWT-----------------------LIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 355 ~l~~~d~~~~~~~~-----------------------l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
.|.++++..+.... ...........++++++.|+..+. ++.+++|++..
T Consensus 228 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~-------d~~i~vwd~~~- 299 (464)
T 3v7d_B 228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY-------DNTLIVWDVAQ- 299 (464)
T ss_dssp CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEET-------TSCEEEEETTT-
T ss_pred cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeC-------CCeEEEEECCC-
Confidence 56666766554221 111222233456889999888874 67899998854
Q ss_pred cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeE
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~ 491 (642)
+. ....+..+. ..+..+.|+|||++|+..+.+ ..|.+||+.+++. +..+..+...+..+.|
T Consensus 300 -------~~-----~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~d---g~i~vwd~~~~~~---~~~~~~h~~~v~~~~~ 360 (464)
T 3v7d_B 300 -------MK-----CLYILSGHT-DRIYSTIYDHERKRCISASMD---TTIRIWDLENGEL---MYTLQGHTALVGLLRL 360 (464)
T ss_dssp -------TE-----EEEEECCCS-SCEEEEEEETTTTEEEEEETT---SCEEEEETTTTEE---EEEECCCSSCEEEEEE
T ss_pred -------Cc-----EEEEecCCC-CCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCcE---EEEEeCCCCcEEEEEE
Confidence 22 445555554 678889999999999877743 4799999998886 6677767667777777
Q ss_pred ecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCC
Q 039497 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS 571 (642)
Q Consensus 492 spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~ 571 (642)
+ +++|+..+.++. |.+||+.++......... . ......|+++++.|+..+ ++
T Consensus 361 ~--~~~l~s~s~dg~--------v~vwd~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~l~~~~-dg-------- 412 (464)
T 3v7d_B 361 S--DKFLVSAAADGS--------IRGWDANDYSRKFSYHHT--N-------LSAITTFYVSDNILVSGS-EN-------- 412 (464)
T ss_dssp C--SSEEEEEETTSE--------EEEEETTTCCEEEEEECT--T-------CCCEEEEEECSSEEEEEE-TT--------
T ss_pred c--CCEEEEEeCCCc--------EEEEECCCCceeeeecCC--C-------CccEEEEEeCCCEEEEec-CC--------
Confidence 6 678888877654 999999876654433222 2 346789999999887766 32
Q ss_pred CCCCCCCCCcEEEEEcCCCceee--ccCCCCCCCCcEEecCCceEEeec
Q 039497 572 WPNQFQPYGDLYVVKLDGSGLRR--LTWNGYENGTPAWHPGNQLDLGKL 618 (642)
Q Consensus 572 ~~~~~~~~~~l~~~~~~~~~~~~--lt~~~~~~~~~~~s~dg~~~~~~~ 618 (642)
.|.+|++..+++.. +..+...+..++|+ +..++++..
T Consensus 413 ---------~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~ 451 (464)
T 3v7d_B 413 ---------QFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVE 451 (464)
T ss_dssp ---------EEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEE
T ss_pred ---------eEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEE
Confidence 78999998887554 34455566788887 334444443
No 152
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.57 E-value=4.4e-13 Score=140.64 Aligned_cols=257 Identities=10% Similarity=0.034 Sum_probs=155.4
Q ss_pred ceEee-CCeEEEEEecCCCceEEEEEecCC-CcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEE
Q 039497 196 PTWSG-DSTIYFHRQADDGWWSIFRVSFPE-NLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI 273 (642)
Q Consensus 196 ~~wsp-dg~~~~~~~~~~g~~~l~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~ 273 (642)
++|+| |+.++++. ..+|...||.+.... +.. ........+...+..++|+|++++|+....++ .+.+
T Consensus 69 ~~~s~~~~~~l~s~-s~dg~v~vwd~~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg-----~i~v 137 (437)
T 3gre_A 69 SAVSPGETPYLITG-SDQGVIKIWNLKEIIVGEV-----YSSSLTYDCSSTVTQITMIPNFDAFAVSSKDG-----QIIV 137 (437)
T ss_dssp EEEECSSSCEEEEE-ETTSEEEEEEHHHHHTTCC-----CSCSEEEECSSCEEEEEECTTSSEEEEEETTS-----EEEE
T ss_pred EEECCCCCCEEEEe-cCCceEEEeECcccccCcc-----cceeeeccCCCCEEEEEEeCCCCEEEEEeCCC-----EEEE
Confidence 69999 99888887 568867777654310 200 01111113455688899999999998866554 8999
Q ss_pred EEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC--CCceeEEeeeCCCccEEcCCCCEEEEEecCC
Q 039497 274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS--PVKELRMLRLNGSFPSFSPDGGLIVFNHDFE 351 (642)
Q Consensus 274 ~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 351 (642)
||+... ..|+.+.+..... ........ ....... ....++++++.|+....
T Consensus 138 wd~~~~-----------~~~~~~~~~~~~~---------i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~-- 190 (437)
T 3gre_A 138 LKVNHY-----------QQESEVKFLNCEC---------IRKINLKNFGKNEYAVR-----MRAFVNEEKSLLVALTN-- 190 (437)
T ss_dssp EEEEEE-----------EETTEEEEEEEEE---------EEEEEGGGGSSCCCEEE-----EEEEECSSCEEEEEEET--
T ss_pred EEeccc-----------cCCceeeccccce---------eEEEEccCcccccCceE-----EEEEEcCCCCEEEEEeC--
Confidence 998321 1122222211100 00000000 0000000 01236889988877654
Q ss_pred CceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccce
Q 039497 352 LNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDV 427 (642)
Q Consensus 352 ~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 427 (642)
...|.++|+..++...... ...+..+.|+|+++.|+..+. ++.+++|++.. +. ..
T Consensus 191 -d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-------dg~i~iwd~~~--------~~-----~~ 249 (437)
T 3gre_A 191 -LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT-------RGIIDIWDIRF--------NV-----LI 249 (437)
T ss_dssp -TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET-------TSCEEEEETTT--------TE-----EE
T ss_pred -CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC-------CCeEEEEEcCC--------cc-----EE
Confidence 3689999998877654443 367889999999999988874 68899999854 11 33
Q ss_pred EEcc-ccCCCCccCc----EECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC--------------------
Q 039497 428 KILT-KEETGNNAFP----SCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG-------------------- 482 (642)
Q Consensus 428 ~~l~-~~~~~~~~~~----~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~-------------------- 482 (642)
..+. .+. ..+..+ .|+||+++|+..+ .+..|.+||+.+++. +..+..+
T Consensus 250 ~~~~~~~~-~~v~~~~~~~~~s~~~~~l~s~~---~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~ 322 (437)
T 3gre_A 250 RSWSFGDH-APITHVEVCQFYGKNSVIVVGGS---SKTFLTIWNFVKGHC---QYAFINSDEQPSMEHFLPIEKGLEELN 322 (437)
T ss_dssp EEEBCTTC-EEEEEEEECTTTCTTEEEEEEES---TTEEEEEEETTTTEE---EEEEESSSSCCCGGGGSCBCSSGGGCC
T ss_pred EEEecCCC-CceEEEEeccccCCCccEEEEEc---CCCcEEEEEcCCCcE---EEEEEcCCCCCccceecccccccccce
Confidence 3333 222 345555 5667787777665 334899999998875 3333321
Q ss_pred ------CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEE
Q 039497 483 ------PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR 527 (642)
Q Consensus 483 ------~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 527 (642)
...+..++|+ ++++|+..+.++. |++||+.+++...
T Consensus 323 ~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~--------i~~wd~~~~~~~~ 364 (437)
T 3gre_A 323 FCGIRSLNALSTISVS-NDKILLTDEATSS--------IVMFSLNELSSSK 364 (437)
T ss_dssp CCCCCSGGGGCCEEEE-TTEEEEEEGGGTE--------EEEEETTCGGGCE
T ss_pred ecccccCCceEEEEEC-CceEEEecCCCCe--------EEEEECCCcccce
Confidence 2234566888 7777776665553 9999998776443
No 153
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.3e-13 Score=147.14 Aligned_cols=297 Identities=11% Similarity=0.061 Sum_probs=164.8
Q ss_pred eeeEEEEEecCCCce-----eEeecCCC--cceEeeC------CeEEEEEecCCCceEEEEEecCCCcc--cccCCccce
Q 039497 172 NTDIVVFQESDPNKR-----VIVCERGG--WPTWSGD------STIYFHRQADDGWWSIFRVSFPENLE--FLGFPIAPT 236 (642)
Q Consensus 172 ~~~l~~~~~~~g~~~-----~l~~~~~~--~~~wspd------g~~~~~~~~~~g~~~l~~~~~~~~~~--~~~~~~~~~ 236 (642)
...|.+|++.+++.. .+....+. .++|+|+ +.++++. ..+|...||.+....... .........
T Consensus 182 D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~-s~DgtvrlWd~~~~~~~~~~~~~~~~p~~ 260 (524)
T 2j04_B 182 SSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFV-SQEGTINFLEIIDNATDVHVFKMCEKPSL 260 (524)
T ss_dssp CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEE-ETTSCEEEEECCCCSSSSSEEECCCSCSE
T ss_pred CceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEE-ecCCeEEEEEcCCCccccccceeecCceE
Confidence 346888999887642 12222232 4699997 4677776 568877777664321100 000000112
Q ss_pred eeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEe
Q 039497 237 RVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLE 316 (642)
Q Consensus 237 ~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~ 316 (642)
.+..+...+..++|++++ .|+....++ .|.+||+..... .....
T Consensus 261 ~l~~h~~~v~sv~~s~~~-~lasgs~Dg-----tV~lWD~~~~~~------------------------------~~~~~ 304 (524)
T 2j04_B 261 TLSLADSLITTFDFLSPT-TVVCGFKNG-----FVAEFDLTDPEV------------------------------PSFYD 304 (524)
T ss_dssp EECCTTTCEEEEEESSSS-EEEEEETTS-----EEEEEETTBCSS------------------------------CSEEE
T ss_pred EEEcCCCCEEEEEecCCC-eEEEEeCCC-----EEEEEECCCCCC------------------------------ceEEe
Confidence 345555567788888865 577644443 899999832110 00000
Q ss_pred eccCCCceeEEeeeCCCcc--EEcCCC-CEEEEEecCCCceeEEEEECCCCCeeE-Eee--c-CCceeeeeecCCCEEEE
Q 039497 317 PVASPVKELRMLRLNGSFP--SFSPDG-GLIVFNHDFELNAGIKIAKSDGSKRWT-LIK--D-RTAFYNSWSPTEKHVIY 389 (642)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~--~~spdg-~~l~~~~~~~~~~~l~~~d~~~~~~~~-l~~--~-~~~~~~~~spdg~~l~~ 389 (642)
. .....+ ..+ .|+|+| +.|+..+. ...|.++|+..++... +.. . ..+..++|+|+++.++.
T Consensus 305 ~--~H~~~V-------~sv~~~~s~~g~~~laS~S~---D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s 372 (524)
T 2j04_B 305 Q--VHDSYI-------LSVSTAYSDFEDTVVSTVAV---DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIY 372 (524)
T ss_dssp E--CSSSCE-------EEEEEECCTTSCCEEEEEET---TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEE
T ss_pred e--cccccE-------EEEEEEcCCCCCeEEEEecc---CCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEE
Confidence 0 000001 122 468888 66666554 3678888887654322 221 1 24678999999998776
Q ss_pred EEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC
Q 039497 390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN 469 (642)
Q Consensus 390 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~ 469 (642)
.+ .+..+++|++.. +. ....+..+. ..+..++|||||+.|+..+.+ ..|.+|++..
T Consensus 373 ~~-------~d~tv~lwd~~~--------~~-----~~~~l~gH~-~~V~sva~Sp~g~~l~Sgs~D---gtv~lwd~~~ 428 (524)
T 2j04_B 373 SD-------GASSLRAVPSRA--------AF-----AVHPLVSRE-TTITAIGVSRLHPMVLAGSAD---GSLIITNAAR 428 (524)
T ss_dssp EC-------SSSEEEEEETTC--------TT-----CCEEEEECS-SCEEEEECCSSCCBCEEEETT---TEEECCBSCS
T ss_pred eC-------CCCcEEEEECcc--------cc-----cceeeecCC-CceEEEEeCCCCCeEEEEECC---CEEEEEechH
Confidence 54 366899998754 22 345566665 788899999999998877633 3788888864
Q ss_pred CccccceeeCCCC-----CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccc
Q 039497 470 GEFNGDIRQLTDG-----PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERI 544 (642)
Q Consensus 470 g~~~~~~~~l~~~-----~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 544 (642)
+. +..+... ...+..++|||+|+.+.+. +. ..++.+...+.....+. ++.. .+
T Consensus 429 ~~----~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~--~~-------~~~~~~~~~g~~~~~l~--gh~~-------~V 486 (524)
T 2j04_B 429 RL----LHGIKNSSATQKSLRLWKWDYSIKDDKYRID--SS-------YEVYPLTVNDVSKAKID--AHGI-------NI 486 (524)
T ss_dssp ST----TTCC------CCCCEEEECBCCSSSCEEEEC--CC-------CCCCC---------------CCC-------SC
T ss_pred hh----ccccccCccceeeeEEEEeccCCCCCeEEcc--CC-------ceecccccCCcceeeec--CCCc-------eE
Confidence 32 1222111 1124567899999955332 21 11333333333333332 3444 67
Q ss_pred cceEEcCCCC---EEEEEEecC
Q 039497 545 NHVCFSADGE---WLLFTANLG 563 (642)
Q Consensus 545 ~~~~~S~Dg~---~l~~~~~~~ 563 (642)
..++|+||+. +|+..+.++
T Consensus 487 ~~Vafsp~~~~~~~lAsg~~~g 508 (524)
T 2j04_B 487 TCTKWNETSAGGKCYAFSNSAG 508 (524)
T ss_dssp CCEEECCSTTTTTEEEEECTTS
T ss_pred EEEECCCCCCccHHHHhhccCc
Confidence 8899999964 776666544
No 154
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=99.56 E-value=6.9e-13 Score=148.46 Aligned_cols=219 Identities=12% Similarity=0.140 Sum_probs=144.6
Q ss_pred ccEEc-CCCCEEEEEecCCCc--eeEEEEECCCC-CeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497 334 FPSFS-PDGGLIVFNHDFELN--AGIKIAKSDGS-KRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVS 409 (642)
Q Consensus 334 ~~~~s-pdg~~l~~~~~~~~~--~~l~~~d~~~~-~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~ 409 (642)
.+.|| |||++|+|.....+. .+||++|++++ +............+.|||||+.|+|+.... .....+||..+
T Consensus 178 ~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~----~~~~~~v~~~~ 253 (751)
T 2xe4_A 178 EVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDE----TLRENKVWRHV 253 (751)
T ss_dssp EEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECT----TCCEEEEEEEE
T ss_pred eeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECC----CCCCCEEEEEE
Confidence 57899 999999998765443 56999999998 622111122246789999999999998531 12235777777
Q ss_pred eecCCCCCCCCCccccceEEccc-cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccce--eeCCCCCCcc
Q 039497 410 FQLDPSDDNNREEIPCDVKILTK-EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI--RQLTDGPWID 486 (642)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~--~~l~~~~~~~ 486 (642)
. . ++.. ....+.. ........+.|||||++|++.+......+||++|+++++. .. +.+....
T Consensus 254 l--g-----t~~~---~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~--~~~~~~l~~~~--- 318 (751)
T 2xe4_A 254 M--G-----KLQS---EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA--HNTLEIVRPRE--- 318 (751)
T ss_dssp T--T-----SCGG---GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT--CCCEEESSCCC---
T ss_pred C--C-----CCch---hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC--CceeEEeecCC---
Confidence 6 2 1210 1123321 1112345689999999999998776778999999987631 14 5565432
Q ss_pred cceeEecC---CCEEEEEecCCCCCCCCceeEEEEeCCC-CceEE-eeecCCCCCCCcccccccceEEcCCCCEEEEEEe
Q 039497 487 TMPSWSPK---GDLIAFSSNRHNPDNVEAFSLYVIKPDG-SGLRR-IHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN 561 (642)
Q Consensus 487 ~~~~~spd---G~~l~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~-l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~ 561 (642)
..+.|+++ |+.|+|.++... ....+|+++++++ ++.+. +...... .....++++++.|++...
T Consensus 319 ~~~~~s~~~~~g~~l~~~t~~~~---a~~~~L~~~d~~~~~~~~~~li~~~~~---------~~l~~~~~~~~~lv~~~~ 386 (751)
T 2xe4_A 319 KGVRYDVQMHGTSHLVILTNEGG---AVNHKLLIAPRGQPSDWSHVLVDHSED---------VFMESIAVRSNYLVVAGR 386 (751)
T ss_dssp TTCCEEEEEETTTEEEEEECTTT---CTTCEEEEEETTSTTCCCCEEECCCSS---------EEEEEEEECSSEEEEEEE
T ss_pred CCceEEEeeeeCCEEEEEeCCCC---CCCcEEEEEcCCCcccceeeEECCCCC---------cEEEEEEEECCEEEEEEE
Confidence 23456665 899999987641 1567899999986 45444 4432221 122346667889999988
Q ss_pred cCCcccCCCCCCCCCCCCCcEEEEEc-------CCCc-eeeccC
Q 039497 562 LGAVMAEPVSWPNQFQPYGDLYVVKL-------DGSG-LRRLTW 597 (642)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~-~~~lt~ 597 (642)
..+.. .|+++++ ++++ .++|+.
T Consensus 387 ~~g~~--------------~l~~~dl~~~~~~~~~g~~~~~l~l 416 (751)
T 2xe4_A 387 RAGLT--------------RIWTMMADSQDGVFKAGTGLREVVM 416 (751)
T ss_dssp ETTEE--------------EEEEEECCTTTSCCCTTTCCEECCC
T ss_pred eCCEE--------------EEEEEecccccccccCCccceEECC
Confidence 77654 8999996 5666 777754
No 155
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.56 E-value=3.8e-12 Score=126.95 Aligned_cols=266 Identities=12% Similarity=0.071 Sum_probs=175.2
Q ss_pred ceEEEEccCCceEecc---cCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC-Ccc
Q 039497 121 ALYSTDLKASKFTRLT---PYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG-GWP 196 (642)
Q Consensus 121 ~l~~~~~~~~~~~~lt---~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~ 196 (642)
.|.+.++.+++..++. .+.......+|+|||++||..+.+. .|.+|++.+++..+....+. ...
T Consensus 46 tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg------------~v~iw~~~~~~~~~~~~~h~~~~~ 113 (318)
T 4ggc_A 46 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA------------EVQLWDVQQQKRLRNMTSHSARVG 113 (318)
T ss_dssp EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS------------EEEEEETTTTEEEEEEECCSSCEE
T ss_pred EEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCC------------cEEEeecCCceeEEEecCccceEE
Confidence 4666699988766543 2333456789999999999988766 78999999987655544333 344
Q ss_pred eEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEe
Q 039497 197 TWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL 276 (642)
Q Consensus 197 ~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~ 276 (642)
.+++++.++++. ..++...++ +...... ....+..+...+....++++|++|+....++ .+.+||+
T Consensus 114 ~~~~~~~~l~s~-~~~~~~~~~--~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-----~i~iwd~ 179 (318)
T 4ggc_A 114 SLSWNSYILSSG-SRSGHIHHH--DVRVAEH------HVATLSGHSQEVCGLRWAPDGRHLASGGNDN-----LVNVWPS 179 (318)
T ss_dssp EEEEETTEEEEE-ETTSEEEEE--ETTSSSC------EEEEEECCSSCEEEEEECTTSSEEEEEETTS-----CEEEEES
T ss_pred EeecCCCEEEEE-ecCCceEee--ecCCCce------eEEEEcCccCceEEEEEcCCCCEEEEEecCc-----ceeEEEC
Confidence 788888887776 445644444 4333311 3344555555667778899999888865544 7889987
Q ss_pred ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeE
Q 039497 277 TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGI 356 (642)
Q Consensus 277 ~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l 356 (642)
........ . ......... ......++|++..++..........|
T Consensus 180 ~~~~~~~~---------------------------~--~~~~~~~~~-------~v~~~~~~~~~~~~~~~~~~~~~~~i 223 (318)
T 4ggc_A 180 APGEGGWV---------------------------P--LQTFTQHQG-------AVKAVAWCPWQSNVLATGGGTSDRHI 223 (318)
T ss_dssp SCBTTBSC---------------------------C--SEEECCCCS-------CEEEEEECTTSTTEEEEEECTTTCEE
T ss_pred CCCccccc---------------------------c--eeeecccCC-------ceEEEEecCCCCcEEEEEecCCCCEE
Confidence 33211000 0 000000000 01234678877766665444556778
Q ss_pred EEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCC
Q 039497 357 KIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEET 435 (642)
Q Consensus 357 ~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 435 (642)
.+++........... ...+....|+|+++.++..+. ..++.+++|++.. +. ....+..+.
T Consensus 224 ~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg-----~~d~~i~iwd~~~--------~~-----~~~~l~gH~- 284 (318)
T 4ggc_A 224 RIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHG-----FAQNQLVIWKYPT--------MA-----KVAELKGHT- 284 (318)
T ss_dssp EEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEEC-----TTTCCEEEEETTT--------CC-----EEEEECCCS-
T ss_pred EEEecccccccccccceeeeeeeeecccccceEEEEE-----cCCCEEEEEECCC--------Cc-----EEEEEcCCC-
Confidence 888988777555444 566788999999999988763 2467899998854 23 566676666
Q ss_pred CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCC
Q 039497 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG 470 (642)
Q Consensus 436 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g 470 (642)
..+..++|||||++|+..+.+ ..|.+||+...
T Consensus 285 ~~V~~l~~spdg~~l~S~s~D---~~v~iWd~~~~ 316 (318)
T 4ggc_A 285 SRVLSLTMSPDGATVASAAAD---ETLRLWRCFEL 316 (318)
T ss_dssp SCEEEEEECTTSSCEEEEETT---TEEEEECCSCC
T ss_pred CCEEEEEEcCCCCEEEEEecC---CeEEEEECCCC
Confidence 788899999999999877743 37888887643
No 156
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.1e-12 Score=134.45 Aligned_cols=228 Identities=11% Similarity=0.077 Sum_probs=155.3
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecC--CCEEEEEEcCCCcccCCCeEEEEE
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPT--EKHVIYTSTGPIFQSERATVQIAR 407 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~l~~ 407 (642)
.++|+|||++|+.... + ..|.++++.......+.. ...+..+.|+|+ ++.|+..+. ++.+++|+
T Consensus 16 ~~~~s~~~~~l~~~~~-d--g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-------dg~v~iwd 85 (379)
T 3jrp_A 16 DAVLDYYGKRLATCSS-D--KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY-------DGKVLIWK 85 (379)
T ss_dssp EEEECSSSSEEEEEET-T--SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET-------TSCEEEEE
T ss_pred EEEEcCCCCEEEEEEC-C--CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc-------CCEEEEEE
Confidence 5689999999888654 2 456666765443333222 556889999987 888888774 68999999
Q ss_pred EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCC--CCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCc
Q 039497 408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD--GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWI 485 (642)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD--g~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~ 485 (642)
+.. +... ....+..+. ..+..+.|+|+ ++.|+..+. ...|.+||+.++.. .....+..+...
T Consensus 86 ~~~--------~~~~---~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~-~~~~~~~~~~~~ 149 (379)
T 3jrp_A 86 EEN--------GRWS---QIAVHAVHS-ASVNSVQWAPHEYGPLLLVASS---DGKVSVVEFKENGT-TSPIIIDAHAIG 149 (379)
T ss_dssp EET--------TEEE---EEEEECCCS-SCEEEEEECCGGGCSEEEEEET---TSEEEEEECCTTSC-CCEEEEECCTTC
T ss_pred cCC--------Ccee---EeeeecCCC-cceEEEEeCCCCCCCEEEEecC---CCcEEEEecCCCCc-eeeEEecCCCCc
Confidence 976 1100 223333344 67888999999 888888774 34799999987642 112344556667
Q ss_pred ccceeEec-------------CCCEEEEEecCCCCCCCCceeEEEEeCCCCceE--Ee-eecCCCCCCCcccccccceEE
Q 039497 486 DTMPSWSP-------------KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR--RI-HVAGPEGSGDVDRERINHVCF 549 (642)
Q Consensus 486 ~~~~~~sp-------------dG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~l-~~~~~~~~~~~~~~~~~~~~~ 549 (642)
+..+.|+| |+++|+..+.++. |++||+.++... .+ ....+.. .+..+.|
T Consensus 150 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~--------i~i~d~~~~~~~~~~~~~~~~h~~-------~v~~~~~ 214 (379)
T 3jrp_A 150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNL--------VKIWKYNSDAQTYVLESTLEGHSD-------WVRDVAW 214 (379)
T ss_dssp EEEEEECCCC----------CTTCEEEEEETTSC--------EEEEEEETTTTEEEEEEEECCCSS-------CEEEEEE
T ss_pred eEEEEEcCccccccccccCCCCCCEEEEEeCCCe--------EEEEEecCCCcceeeEEEEecccC-------cEeEEEE
Confidence 78899999 7999988887764 999998765432 22 1223333 5788999
Q ss_pred cCC---CCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc----eeeccC--CCCCCCCcEEecCCceEEeecC
Q 039497 550 SAD---GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG----LRRLTW--NGYENGTPAWHPGNQLDLGKLR 619 (642)
Q Consensus 550 S~D---g~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~lt~--~~~~~~~~~~s~dg~~~~~~~~ 619 (642)
+|| ++.|+..+.++ .|.+|++..+. ...+.. +...+..++|+|||+++++...
T Consensus 215 sp~~~~~~~l~s~~~dg-----------------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 276 (379)
T 3jrp_A 215 SPTVLLRSYLASVSQDR-----------------TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 276 (379)
T ss_dssp CCCCSSSEEEEEEETTS-----------------CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES
T ss_pred CCCCCCCCeEEEEeCCC-----------------EEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC
Confidence 999 77777766554 67777877653 222322 4455678899999998876544
No 157
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.55 E-value=1.4e-12 Score=129.13 Aligned_cols=230 Identities=12% Similarity=0.068 Sum_probs=150.9
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCC--e-eEEee-cCCceeeeeecC--CCEEEEEEcCCCcccCCCeEEEEE
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK--R-WTLIK-DRTAFYNSWSPT--EKHVIYTSTGPIFQSERATVQIAR 407 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~--~-~~l~~-~~~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~l~~ 407 (642)
..+|+|||++|+..+. ...|.++++++.. . ..+.. ...+..+.|+|+ |+.|+..+. ++.+++|+
T Consensus 14 ~~~~s~~g~~las~s~---D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~-------D~~v~iWd 83 (297)
T 2pm7_B 14 DAVMDYYGKRMATCSS---DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY-------DGKVMIWK 83 (297)
T ss_dssp EEEECTTSSEEEEEET---TSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET-------TTEEEEEE
T ss_pred EEEECCCCCEEEEEeC---CCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcC-------CCEEEEEE
Confidence 4589999999888764 3567777776432 2 22322 567889999864 888887764 78999999
Q ss_pred EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCC--CCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCc
Q 039497 408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD--GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWI 485 (642)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD--g~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~ 485 (642)
+.. +... ....+..+. ..+..+.|+|+ |+.|+..+. +..|.+||+.++.. .....+..+...
T Consensus 84 ~~~--------~~~~---~~~~~~~h~-~~v~~v~~~p~~~g~~l~s~s~---d~~v~~wd~~~~~~-~~~~~~~~h~~~ 147 (297)
T 2pm7_B 84 EEN--------GRWS---QIAVHAVHS-ASVNSVQWAPHEYGPMLLVASS---DGKVSVVEFKENGT-TSPIIIDAHAIG 147 (297)
T ss_dssp BSS--------SCBC---CCEEECCCS-SCEEEEEECCGGGCSEEEEEET---TSEEEEEEBCSSSC-BCCEEEECCSSC
T ss_pred cCC--------CceE---EEEEeecCC-CceeEEEeCcCCCCcEEEEEEC---CCcEEEEEecCCCc-eeeeeeecccCc
Confidence 865 2111 233344444 66788999998 888887764 34788899876532 002334455566
Q ss_pred ccceeEecC-------------CCEEEEEecCCCCCCCCceeEEEEeCCCCceE--Ee-eecCCCCCCCcccccccceEE
Q 039497 486 DTMPSWSPK-------------GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR--RI-HVAGPEGSGDVDRERINHVCF 549 (642)
Q Consensus 486 ~~~~~~spd-------------G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~l-~~~~~~~~~~~~~~~~~~~~~ 549 (642)
+..+.|+|+ +++|+..+.++. |.+||+..++.. .+ +..++.. .+..++|
T Consensus 148 v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~--------v~lwd~~~~~~~~~~~~~l~~H~~-------~V~~v~~ 212 (297)
T 2pm7_B 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNL--------VKIWKYNSDAQTYVLESTLEGHSD-------WVRDVAW 212 (297)
T ss_dssp EEEEEECCCC------------CCEEEEEETTSC--------EEEEEEETTTTEEEEEEEECCCSS-------CEEEEEE
T ss_pred cceEeecCCcccccccCCCCCCcceEEEEcCCCc--------EEEEEEcCCCceEEEEEEecCCCC-------ceEEEEE
Confidence 778899997 567887777664 889998765421 11 2224444 6789999
Q ss_pred cCCC---CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc----eeec--cCCCCCCCCcEEecCCceEEeecCC
Q 039497 550 SADG---EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG----LRRL--TWNGYENGTPAWHPGNQLDLGKLRL 620 (642)
Q Consensus 550 S~Dg---~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~l--t~~~~~~~~~~~s~dg~~~~~~~~~ 620 (642)
+|++ ++|+..+.++ .|.+|+++... ...+ ..+...+..++|+|+|++|++....
T Consensus 213 sp~~~~~~~las~s~D~-----------------~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D 275 (297)
T 2pm7_B 213 SPTVLLRSYMASVSQDR-----------------TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD 275 (297)
T ss_dssp CCCCSSSEEEEEEETTS-----------------CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETT
T ss_pred CCCCCCceEEEEEECCC-----------------cEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCC
Confidence 9996 6666666554 56666765532 2233 2234456788999999999876554
Q ss_pred C
Q 039497 621 E 621 (642)
Q Consensus 621 ~ 621 (642)
+
T Consensus 276 ~ 276 (297)
T 2pm7_B 276 N 276 (297)
T ss_dssp S
T ss_pred C
Confidence 3
No 158
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.54 E-value=3.5e-12 Score=131.98 Aligned_cols=299 Identities=11% Similarity=0.052 Sum_probs=184.5
Q ss_pred ceeeCCCCCccccceeec-CCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccc
Q 039497 235 PTRVTPPGVHCFTPAAFH-DGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIP 313 (642)
Q Consensus 235 ~~~l~~~~~~~~~~~~Sp-dG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~ 313 (642)
...+..+...+..++|+| +|++|+....++ .+.+||+......... ...
T Consensus 36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~-----------~~~-------------- 85 (408)
T 4a11_B 36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDG-----VIVLYDLENSSRQSYY-----------TCK-------------- 85 (408)
T ss_dssp EEECCCCSSCEEEEEECTTTCCEEEEEETTS-----CEEEEECCCCSSSSCE-----------EEC--------------
T ss_pred eeeeeccCCcEEEEEEecCCCCEEEEEcCCC-----eEEEEECCCCcccceE-----------ecc--------------
Confidence 344556677889999999 999998865544 8999998543311110 000
Q ss_pred eEeeccCCCceeEEeeeCCCccEEcC-CCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCC---CEEE
Q 039497 314 HLEPVASPVKELRMLRLNGSFPSFSP-DGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTE---KHVI 388 (642)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg---~~l~ 388 (642)
........ ...........+.|+| +++.|+.... ...|.++++.+++...... ...+..+.|+|.+ ..++
T Consensus 86 ~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (408)
T 4a11_B 86 AVCSIGRD--HPDVHRYSVETVQWYPHDTGMFTSSSF---DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVA 160 (408)
T ss_dssp EEEEECTT--CTTCCSSCEEEEEECTTCTTCEEEEET---TSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEE
T ss_pred cccccccc--ccccCCCcEEEEEEccCCCcEEEEEeC---CCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEE
Confidence 00000000 0000001113558999 6666666543 3678899998887655544 5667788888854 4677
Q ss_pred EEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC
Q 039497 389 YTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV 468 (642)
Q Consensus 389 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~ 468 (642)
.... ++.+.+|++.. +. ....+..+. ..+..+.|+|++++++++...++ .|.+||+.
T Consensus 161 ~~~~-------~~~v~~~d~~~--------~~-----~~~~~~~~~-~~v~~~~~~~~~~~ll~~~~~dg--~i~i~d~~ 217 (408)
T 4a11_B 161 VGTR-------GPKVQLCDLKS--------GS-----CSHILQGHR-QEILAVSWSPRYDYILATASADS--RVKLWDVR 217 (408)
T ss_dssp EEES-------SSSEEEEESSS--------SC-----CCEEECCCC-SCEEEEEECSSCTTEEEEEETTS--CEEEEETT
T ss_pred EEcC-------CCeEEEEeCCC--------cc-----eeeeecCCC-CcEEEEEECCCCCcEEEEEcCCC--cEEEEECC
Confidence 6653 67899999865 22 455555555 67888999999997555554333 78899987
Q ss_pred CCccccceeeC---------------CCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCC
Q 039497 469 NGEFNGDIRQL---------------TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP 533 (642)
Q Consensus 469 ~g~~~~~~~~l---------------~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~ 533 (642)
+++. ....+ ..+...+..+.|+|+|++|+..+.++. |.+||+.+++.........
T Consensus 218 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--------i~vwd~~~~~~~~~~~~~~ 287 (408)
T 4a11_B 218 RASG--CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR--------MRLWNSSNGENTLVNYGKV 287 (408)
T ss_dssp CSSC--CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC--------EEEEETTTCCBCCCCCCCC
T ss_pred CCCc--ccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe--------EEEEECCCCccceeccccc
Confidence 6641 02222 234455677899999999998887764 9999998876543221110
Q ss_pred CCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCc
Q 039497 534 EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQ 612 (642)
Q Consensus 534 ~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~ 612 (642)
.. ..............+..+++...++ .|.+|++..++ +..+..+...+..++|+||++
T Consensus 288 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 347 (408)
T 4a11_B 288 CN---NSKKGLKFTVSCGCSSEFVFVPYGS-----------------TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQ 347 (408)
T ss_dssp CC---CCSSCCCCEECCSSSSCEEEEEETT-----------------EEEEEETTTCCEEEEECCCSSCEEEEEEETTTT
T ss_pred cc---cccccceeEEecCCCceEEEEecCC-----------------EEEEEECcCCcceeeeccCCCeEEEEEEcCCCC
Confidence 00 0000111122223344555555543 78999987766 455666667778999999999
Q ss_pred eEEeecCCC
Q 039497 613 LDLGKLRLE 621 (642)
Q Consensus 613 ~~~~~~~~~ 621 (642)
+|++....|
T Consensus 348 ~l~s~~~dg 356 (408)
T 4a11_B 348 ELYSGSRDC 356 (408)
T ss_dssp EEEEEETTS
T ss_pred EEEEECCCC
Confidence 998765443
No 159
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.54 E-value=4.8e-12 Score=128.85 Aligned_cols=317 Identities=11% Similarity=0.028 Sum_probs=172.4
Q ss_pred eCCeEEEEEecCCC---ceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEec-----cCCceeeE
Q 039497 200 GDSTIYFHRQADDG---WWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRR-----KNRNFRHI 271 (642)
Q Consensus 200 pdg~~~~~~~~~~g---~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~-----~~~~~~~i 271 (642)
+|++.+|+.+.... ...|+.+|..+++ ....+.. +... .+++||||++|+++... .+.....+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~-------~~~~i~~-g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v 83 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGK-------FLGMVPT-AFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVV 83 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCC-------EEEEEEC-CEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCe-------EEEEecC-CCCC-ceEECCCCCEEEEEEecccccccCCCCCEE
Confidence 46665665532111 1278888988773 2233333 3233 78999999999887542 12234467
Q ss_pred EEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCC
Q 039497 272 EIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFE 351 (642)
Q Consensus 272 ~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 351 (642)
.+||+... +.+.-. ...... . ........+.+||||++|+.... .
T Consensus 84 ~v~d~~t~--------------~~~~~i----------------~~~~~~---~-~~g~~p~~i~~spdg~~l~v~n~-~ 128 (361)
T 2oiz_A 84 EVWDADKL--------------TFEKEI----------------SLPPKR---V-QGLNYDGLFRQTTDGKFIVLQNA-S 128 (361)
T ss_dssp EEEETTTC--------------CEEEEE----------------EECTTB---C-CBCCCGGGEEECTTSSEEEEEEE-S
T ss_pred EEEECcCC--------------cEEEEE----------------EcCccc---c-ccCCCcceEEECCCCCEEEEECC-C
Confidence 77775211 111110 000000 0 00011235689999998877543 2
Q ss_pred CceeEEEEECCCCCeeEE-eecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceE-E
Q 039497 352 LNAGIKIAKSDGSKRWTL-IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVK-I 429 (642)
Q Consensus 352 ~~~~l~~~d~~~~~~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~ 429 (642)
....|.++|+++++.... ........+.+.|+++..++... .++.+.++.++. + + +.. .
T Consensus 129 ~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~------~dg~~~~v~~~~--~------g-----~~~~~ 189 (361)
T 2oiz_A 129 PATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTIC------GDGGLLTINLGE--D------G-----KVASQ 189 (361)
T ss_dssp SSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEE------TTSSEEEEEECT--T------S-----SEEEE
T ss_pred CCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEEC------CCCcEEEEEECC--C------C-----cEeee
Confidence 247899999998765443 32222222445666543333331 244555555433 1 2 111 0
Q ss_pred -----ccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee--CCC--------CCCcccceeEecC
Q 039497 430 -----LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ--LTD--------GPWIDTMPSWSPK 494 (642)
Q Consensus 430 -----l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~--l~~--------~~~~~~~~~~spd 494 (642)
+.... .......++|||+.+++.+.. ..++.+|+.+++. ..... +.. .+.....++++||
T Consensus 190 ~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~---~~v~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d 264 (361)
T 2oiz_A 190 SRSKQMFSVK-DDPIFIAPALDKDKAHFVSYY---GNVYSADFSGDEV-KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA 264 (361)
T ss_dssp EECCCCSCTT-TSCBCSCCEECSSEEEEEBTT---SEEEEEECSSSSC-EEEEEEESCCHHHHHTTCEECCSSCEEEETT
T ss_pred ccccceEcCC-CCceEEEecccCCEEEEEeCC---CeEEEEEecCCCc-eecccccccCccccccccccCCeeEEEEecC
Confidence 11111 122234568899888888742 3799999875542 00011 111 0111223689999
Q ss_pred CCEEEEEec-CCCC--CCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCC
Q 039497 495 GDLIAFSSN-RHNP--DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS 571 (642)
Q Consensus 495 G~~l~~~~~-~~~~--~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~ 571 (642)
|+++|.... +... .......|++||+++++...-...+. +..++|||||++||.+. . +
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~----------p~~ia~spdg~~l~v~n-~-~------- 325 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD----------ALSMTIDQQRNLMLTLD-G-G------- 325 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT----------CCEEEEETTTTEEEEEC-S-S-------
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC----------eeEEEECCCCCEEEEeC-C-C-------
Confidence 999887754 1100 00123579999998876554333221 36899999999776544 3 2
Q ss_pred CCCCCCCCCcEEEEEcCCC--ce-eeccCCCCCCCCcEEecCCc
Q 039497 572 WPNQFQPYGDLYVVKLDGS--GL-RRLTWNGYENGTPAWHPGNQ 612 (642)
Q Consensus 572 ~~~~~~~~~~l~~~~~~~~--~~-~~lt~~~~~~~~~~~s~dg~ 612 (642)
.|.+||..++ ++ ..+...+.....++++|||+
T Consensus 326 ---------~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 326 ---------NVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp ---------CEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred ---------eEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 7999999888 53 33333444556789999985
No 160
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.53 E-value=2.1e-12 Score=131.48 Aligned_cols=270 Identities=12% Similarity=0.046 Sum_probs=160.8
Q ss_pred cccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC-CcceEeeCCeEEEEEecCCC
Q 039497 135 LTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG-GWPTWSGDSTIYFHRQADDG 213 (642)
Q Consensus 135 lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~wspdg~~~~~~~~~~g 213 (642)
+..+.......+|||||++||....+. +.+|++..++........+ ....|++++..++.....++
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-------------~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-------------FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKE 81 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-------------EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTT
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-------------EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCcc
Confidence 344555567899999999999875432 5688887665443322222 34588888876655434445
Q ss_pred ceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCC
Q 039497 214 WWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANS 293 (642)
Q Consensus 214 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg 293 (642)
.|..+|..++. ....+. ....+..+.+++++ ++++. . ..+++||+....
T Consensus 82 --~v~iWd~~~~~-------~~~~~~-~~~~v~~v~~~~~~--~~~~~-~-----~~i~i~d~~~~~------------- 130 (355)
T 3vu4_A 82 --VVHIWDDVKKQ-------DVSRIK-VDAPVKDLFLSREF--IVVSY-G-----DVISVFKFGNPW------------- 130 (355)
T ss_dssp --EEEEEETTTTE-------EEEEEE-CSSCEEEEEECSSE--EEEEE-T-----TEEEEEESSTTC-------------
T ss_pred --EEEEEECCCCc-------EEEEEE-CCCceEEEEEcCCE--EEEEE-c-----CEEEEEECCCCc-------------
Confidence 66667777763 333333 23356666777664 44432 2 268888873220
Q ss_pred CEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCC--------
Q 039497 294 EFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK-------- 365 (642)
Q Consensus 294 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~-------- 365 (642)
. ....+. . ......+++ +.+++.+. .....|.++|+..+.
T Consensus 131 ----------~------~~~~~~----------~---~~~~~~~s~--~~la~~sg-~~~g~v~iwd~~~~~~~~~~~~~ 178 (355)
T 3vu4_A 131 ----------K------RITDDI----------R---FGGVCEFSN--GLLVYSNE-FNLGQIHITKLQSSGSATTQDQG 178 (355)
T ss_dssp ----------C------BSSCCE----------E---EEEEEEEET--TEEEEEES-SCTTCEEEEECCC----------
T ss_pred ----------e------eeEEec----------c---CCceEEEEc--cEEEEeCC-CcCcEEEEEECCCCCcccccccc
Confidence 0 000000 0 001224555 66777622 234568888887654
Q ss_pred ---------eeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCe-EEEEEEEeecCCCCCCCCCccccceEEcc-c-
Q 039497 366 ---------RWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERAT-VQIARVSFQLDPSDDNNREEIPCDVKILT-K- 432 (642)
Q Consensus 366 ---------~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~- 432 (642)
...+.. ...+..+.|+|||+.|+..+. ++. +++|++.. +. ....+. .
T Consensus 179 ~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~-------d~~~v~iwd~~~--------~~-----~~~~~~~g~ 238 (355)
T 3vu4_A 179 VQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ-------DGTIIRVFKTED--------GV-----LVREFRRGL 238 (355)
T ss_dssp --------CCEEECCCSSCEEEEEECTTSSEEEEEET-------TCSEEEEEETTT--------CC-----EEEEEECTT
T ss_pred ccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC-------CCCEEEEEECCC--------Cc-----EEEEEEcCC
Confidence 222322 567889999999999998874 676 99999865 22 455555 2
Q ss_pred cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC--------------------C-CCcccceeE
Q 039497 433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD--------------------G-PWIDTMPSW 491 (642)
Q Consensus 433 ~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~--------------------~-~~~~~~~~~ 491 (642)
+. ..+..++|||||++|+..+.+ ..|.+||+..+... ....+.. . ......++|
T Consensus 239 h~-~~v~~~~~s~~~~~l~s~s~d---~~v~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 313 (355)
T 3vu4_A 239 DR-ADVVDMKWSTDGSKLAVVSDK---WTLHVFEIFNDQDN-KRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAW 313 (355)
T ss_dssp CC-SCEEEEEECTTSCEEEEEETT---CEEEEEESSCCSCC-CSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEE
T ss_pred CC-CcEEEEEECCCCCEEEEEECC---CEEEEEEccCCCCc-ccccccceeeccccccccceeEEEeccCCCCCceEEEE
Confidence 44 678889999999999888743 47899998765420 0111111 0 011245789
Q ss_pred ecCCCEEEEEecCC
Q 039497 492 SPKGDLIAFSSNRH 505 (642)
Q Consensus 492 spdG~~l~~~~~~~ 505 (642)
++||+.|+....++
T Consensus 314 ~~d~~~l~~~~~dg 327 (355)
T 3vu4_A 314 ISESSLVVVWPHTR 327 (355)
T ss_dssp SSSSEEEEEETTTT
T ss_pred eCCCCEEEEEeCCC
Confidence 99999888887654
No 161
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.53 E-value=8.3e-13 Score=133.35 Aligned_cols=290 Identities=9% Similarity=-0.056 Sum_probs=178.9
Q ss_pred CCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeecc
Q 039497 240 PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVA 319 (642)
Q Consensus 240 ~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~ 319 (642)
.+...+..++|+|+|++|+....++ .+.+|++..... ..... ....
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~-----~v~iw~~~~~~~-------------~~~~~--------------~~~~-- 54 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDG-----SLTVYKFDIQAK-------------NVDLL--------------QSLR-- 54 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTS-----EEEEEEEETTTT-------------EEEEE--------------EEEE--
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCC-----eEEEEEeCCCCc-------------cccce--------------eeee--
Confidence 4456788889999999888865443 899998743210 00000 0000
Q ss_pred CCCceeEEeeeCCCccEEcCCCC-EEEEEecCCCceeEEEEEC-CCCCeeEEe---ecCCceeeeeecCCCEEEEEEcCC
Q 039497 320 SPVKELRMLRLNGSFPSFSPDGG-LIVFNHDFELNAGIKIAKS-DGSKRWTLI---KDRTAFYNSWSPTEKHVIYTSTGP 394 (642)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~l~~~d~-~~~~~~~l~---~~~~~~~~~~spdg~~l~~~~~~~ 394 (642)
.......+.|+|+++ .|+.... ...|.++++ .+++...+. ....+..+.|+| ++.|+..+.
T Consensus 55 --------~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~-- 120 (342)
T 1yfq_A 55 --------YKHPLLCCNFIDNTDLQIYVGTV---QGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASW-- 120 (342)
T ss_dssp --------CSSCEEEEEEEESSSEEEEEEET---TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEET--
T ss_pred --------cCCceEEEEECCCCCcEEEEEcC---CCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcC--
Confidence 001112458999999 8887654 367899999 888765554 245678899999 888887764
Q ss_pred CcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC-Cccc
Q 039497 395 IFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN-GEFN 473 (642)
Q Consensus 395 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~-g~~~ 473 (642)
++.+++|++...........+. ....+. .. ..+..+.|+|++ |+..+. ...|.+||+.+ +..
T Consensus 121 -----d~~i~iwd~~~~~~~~~~~~~~----~~~~~~-~~-~~v~~~~~~~~~--l~~~~~---d~~i~i~d~~~~~~~- 183 (342)
T 1yfq_A 121 -----DGLIEVIDPRNYGDGVIAVKNL----NSNNTK-VK-NKIFTMDTNSSR--LIVGMN---NSQVQWFRLPLCEDD- 183 (342)
T ss_dssp -----TSEEEEECHHHHTTBCEEEEES----CSSSSS-SC-CCEEEEEECSSE--EEEEES---TTEEEEEESSCCTTC-
T ss_pred -----CCeEEEEcccccccccccccCC----eeeEEe-eC-CceEEEEecCCc--EEEEeC---CCeEEEEECCccccc-
Confidence 6889999875300000000010 122222 33 567788999988 555553 23799999987 542
Q ss_pred cceeeCCCCCCcccceeEec-CCCEEEEEecCCCCCCCCceeEEEEeCCCC------ceEEeeecCCCC-CCCccccccc
Q 039497 474 GDIRQLTDGPWIDTMPSWSP-KGDLIAFSSNRHNPDNVEAFSLYVIKPDGS------GLRRIHVAGPEG-SGDVDRERIN 545 (642)
Q Consensus 474 ~~~~~l~~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~l~~~d~~~~------~~~~l~~~~~~~-~~~~~~~~~~ 545 (642)
............+..+.|+| +|++|+..+.++. |.+|+++.. +........... ........+.
T Consensus 184 ~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~--------i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 255 (342)
T 1yfq_A 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR--------VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVN 255 (342)
T ss_dssp CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE--------EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEE
T ss_pred cceeeecCCCCceeEEEECCCCCCEEEEEecCCc--------EEEEEEcCCCcccccccceeeecccccccccccceeEE
Confidence 00123334455677889999 9999988887653 777777654 332222211110 0000011467
Q ss_pred ceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCC-CCCCCCcEEecCCceEEeecCCC
Q 039497 546 HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWN-GYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 546 ~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~-~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
.+.|+|||++|+..+.++ .|++|++..++ +..+..+ ...+..++ ||++++++....+
T Consensus 256 ~~~~s~~~~~l~~~~~dg-----------------~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 256 SIEFSPRHKFLYTAGSDG-----------------IISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD 314 (342)
T ss_dssp EEEECTTTCCEEEEETTS-----------------CEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred EEEEcCCCCEEEEecCCc-----------------eEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence 899999999888777554 78999998766 4455554 55555666 9999998776655
No 162
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.52 E-value=7.4e-12 Score=126.15 Aligned_cols=310 Identities=11% Similarity=0.054 Sum_probs=165.1
Q ss_pred ccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCce--eEe--ecCC---CcceEee--CCeEEE
Q 039497 136 TPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKR--VIV--CERG---GWPTWSG--DSTIYF 206 (642)
Q Consensus 136 t~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~l~--~~~~---~~~~wsp--dg~~~~ 206 (642)
..+.......+|||||++||....++ .|.+|++.++... .+. ..+. ..++|+| |+.+++
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~dg------------~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~ 75 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSSDQ------------HIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIA 75 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTS------------EEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEE
T ss_pred cccccceeEEEEcCCCCEEEEeeCCC------------eEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEE
Confidence 34455566789999999999987665 7899999876422 111 2222 2459999 688888
Q ss_pred EEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecC--CcEEEEEEeccCCceeeEEEEEeecCCCCcc
Q 039497 207 HRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHD--GKRLAVATRRKNRNFRHIEIYDLTLNPNFHH 284 (642)
Q Consensus 207 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Spd--G~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~ 284 (642)
+. ..+|...||.++................+..+...+..++|+|+ |++|+....++ .+.+||+........
T Consensus 76 s~-~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~~~~~ 149 (351)
T 3f3f_A 76 SA-SYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDG-----ILRLYDALEPSDLRS 149 (351)
T ss_dssp EE-ETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTC-----EEEEEECSSTTCTTC
T ss_pred EE-cCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCC-----cEEEecCCChHHhcc
Confidence 77 56787777766543210000000023445566667888999999 99888865544 899999844321111
Q ss_pred cCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCC---CCEEEEEecCCCceeEEEEEC
Q 039497 285 YNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPD---GGLIVFNHDFELNAGIKIAKS 361 (642)
Q Consensus 285 ~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd---g~~l~~~~~~~~~~~l~~~d~ 361 (642)
+...... ........ ........+.|+|+ ++.++.... ...+...+.
T Consensus 150 -----------~~~~~~~-------------~~~~~~~~---~~~~~~~~~~~~p~~~~~~~l~~~~~---~~~~~~~~~ 199 (351)
T 3f3f_A 150 -----------WTLTSEM-------------KVLSIPPA---NHLQSDFCLSWCPSRFSPEKLAVSAL---EQAIIYQRG 199 (351)
T ss_dssp -----------CEEEEEE-------------ESCSCCCS---SCSCCCEEEEECCCSSSCCEEEEEET---TEEEEEEEC
T ss_pred -----------ccccccc-------------cccccccC---CcccceeEEEeccCCCCCcEEEEecC---CCcEEEEcc
Confidence 0000000 00000000 00011235578887 887777654 244555555
Q ss_pred CCCCeeEEee----cCCceeeeeecCC----CEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcccc
Q 039497 362 DGSKRWTLIK----DRTAFYNSWSPTE----KHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE 433 (642)
Q Consensus 362 ~~~~~~~l~~----~~~~~~~~~spdg----~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 433 (642)
..+....+.. ...+..+.|+|++ +.|+..+ .++.+++|++.. . . ........
T Consensus 200 ~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~-------~dg~i~iwd~~~--~------~-----~~~~~~~~ 259 (351)
T 3f3f_A 200 KDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC-------KDGRIRIFKITE--K------L-----SPLASEES 259 (351)
T ss_dssp TTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE-------TTSCEEEEEEEE--C------C-------------
T ss_pred CCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc-------CCCeEEEEeCCC--C------c-----CccccCCc
Confidence 5555433332 4568899999998 5666665 378999999987 1 1 11111111
Q ss_pred CCCCccCcEECCCCCeEEEEeCCCC-ceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCc
Q 039497 434 ETGNNAFPSCSPDGKFLVFRSGRSG-HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA 512 (642)
Q Consensus 434 ~~~~~~~~~~SpDg~~l~~~~~~~g-~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~ 512 (642)
. ........+++...+........ ...+.+++...++. +..+..+...+..++|+|+|++|+..+.++.
T Consensus 260 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~------ 329 (351)
T 3f3f_A 260 L-TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL---LSEHDDHNGEVWSVSWNLTGTILSSAGDDGK------ 329 (351)
T ss_dssp --------------------------------CCSEEEEE---EEEECTTSSCEEEEEECSSSCCEEEEETTSC------
T ss_pred c-cceeccCCCcccccccccccccccceeeeecccccccE---EEEEecccccEEEEEEcCCCCEEEEecCCCc------
Confidence 1 12222333333333222211111 11222222222332 4445556667888999999999998887765
Q ss_pred eeEEEEeCCCCce
Q 039497 513 FSLYVIKPDGSGL 525 (642)
Q Consensus 513 ~~l~~~d~~~~~~ 525 (642)
|.+|++..++.
T Consensus 330 --v~iw~~~~~~~ 340 (351)
T 3f3f_A 330 --VRLWKATYSNE 340 (351)
T ss_dssp --EEEEEECTTSC
T ss_pred --EEEEecCcCcc
Confidence 89999977543
No 163
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.51 E-value=9.8e-13 Score=137.98 Aligned_cols=256 Identities=10% Similarity=0.049 Sum_probs=155.0
Q ss_pred CCCCCccccceeec-CCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEee
Q 039497 239 TPPGVHCFTPAAFH-DGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEP 317 (642)
Q Consensus 239 ~~~~~~~~~~~~Sp-dG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~ 317 (642)
..+...+..++|+| ||++|+....++ .|.+||+......... .......
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg-----~v~vwd~~~~~~~~~~-------------------------~~~~~~~ 109 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQG-----VIKIWNLKEIIVGEVY-------------------------SSSLTYD 109 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTS-----EEEEEEHHHHHTTCCC-------------------------SCSEEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCc-----eEEEeECcccccCccc-------------------------ceeeecc
Confidence 34445678889999 999998866444 8999998431100000 0000000
Q ss_pred ccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECC---CCCeeEEeecCC--------------ceeee-
Q 039497 318 VASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD---GSKRWTLIKDRT--------------AFYNS- 379 (642)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~---~~~~~~l~~~~~--------------~~~~~- 379 (642)
. ......+.|+|+++.|+.... + ..|.+++++ .++......... +..+.
T Consensus 110 h----------~~~v~~~~~~~~~~~l~s~s~-d--g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 176 (437)
T 3gre_A 110 C----------SSTVTQITMIPNFDAFAVSSK-D--GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRA 176 (437)
T ss_dssp C----------SSCEEEEEECTTSSEEEEEET-T--SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEE
T ss_pred C----------CCCEEEEEEeCCCCEEEEEeC-C--CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEE
Confidence 0 011124588999998877654 2 456666653 333222211111 22222
Q ss_pred -eecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc--cCCCCccCcEECCCCCeEEEEeCC
Q 039497 380 -WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK--EETGNNAFPSCSPDGKFLVFRSGR 456 (642)
Q Consensus 380 -~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~SpDg~~l~~~~~~ 456 (642)
++|+++.|+..+. ++.+++|++.. +. ....+.. +. ..+..++|+|++++|+..+.+
T Consensus 177 ~~~~~~~~l~~~~~-------d~~i~iwd~~~--------~~-----~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~d 235 (437)
T 3gre_A 177 FVNEEKSLLVALTN-------LSRVIIFDIRT--------LE-----RLQIIENSPRH-GAVSSICIDEECCVLILGTTR 235 (437)
T ss_dssp EECSSCEEEEEEET-------TSEEEEEETTT--------CC-----EEEEEECCGGG-CCEEEEEECTTSCEEEEEETT
T ss_pred EEcCCCCEEEEEeC-------CCeEEEEeCCC--------Ce-----eeEEEccCCCC-CceEEEEECCCCCEEEEEcCC
Confidence 5678888887764 78999999855 22 4455544 34 678889999999999887743
Q ss_pred CCceeEEEEECCCCccccceeeCC-CCCCcccce----eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec
Q 039497 457 SGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMP----SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA 531 (642)
Q Consensus 457 ~g~~~l~~~d~~~g~~~~~~~~l~-~~~~~~~~~----~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 531 (642)
..|.+||+.+++. +..+. .+...+..+ .|+|||++|+..+.++ .|.+||+.+++.......
T Consensus 236 ---g~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg--------~i~iwd~~~~~~~~~~~~ 301 (437)
T 3gre_A 236 ---GIIDIWDIRFNVL---IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKT--------FLTIWNFVKGHCQYAFIN 301 (437)
T ss_dssp ---SCEEEEETTTTEE---EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTE--------EEEEEETTTTEEEEEEES
T ss_pred ---CeEEEEEcCCccE---EEEEecCCCCceEEEEeccccCCCccEEEEEcCCC--------cEEEEEcCCCcEEEEEEc
Confidence 4799999998875 45443 444455666 5566787777766554 399999987765443331
Q ss_pred CCCCCC-------------------CcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc
Q 039497 532 GPEGSG-------------------DVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG 591 (642)
Q Consensus 532 ~~~~~~-------------------~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 591 (642)
. .... ......+..+.|+ ++++|+..+.++ .|.+|++..++
T Consensus 302 ~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~-----------------~i~~wd~~~~~ 361 (437)
T 3gre_A 302 S-DEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATS-----------------SIVMFSLNELS 361 (437)
T ss_dssp S-SSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGT-----------------EEEEEETTCGG
T ss_pred C-CCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCC-----------------eEEEEECCCcc
Confidence 1 1000 0011246778898 777676665554 78899988765
No 164
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.51 E-value=4.2e-11 Score=128.39 Aligned_cols=325 Identities=11% Similarity=0.038 Sum_probs=181.3
Q ss_pred ceEEEEccCCceEe-cccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEec--CCCceeEeecCC--Cc
Q 039497 121 ALYSTDLKASKFTR-LTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQES--DPNKRVIVCERG--GW 195 (642)
Q Consensus 121 ~l~~~~~~~~~~~~-lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~l~~~~~--~~ 195 (642)
.|+.+|..+++... +..+ .....+.+||||++|+....+. .|.++|+. +++...-..... ..
T Consensus 178 ~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg------------~V~viD~~~~t~~~v~~i~~G~~P~~ 244 (567)
T 1qks_A 178 QIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDG------------KVNMIDLWMKEPTTVAEIKIGSEARS 244 (567)
T ss_dssp EEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTS------------EEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred eEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCC------------eEEEEECCCCCCcEeEEEecCCCCce
Confidence 79999999887653 4433 2334689999999988765433 69999996 554332222111 24
Q ss_pred ceEe----eCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCC-----------ccccceeecCCcEEEEE
Q 039497 196 PTWS----GDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGV-----------HCFTPAAFHDGKRLAVA 260 (642)
Q Consensus 196 ~~ws----pdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~SpdG~~l~~~ 260 (642)
.++| |||+.+|+.+...+ .+..+|..+.+ ....+...+. .+..+..|+++..+++.
T Consensus 245 ia~s~~~~pDGk~l~v~n~~~~--~v~ViD~~t~~-------~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~ 315 (567)
T 1qks_A 245 IETSKMEGWEDKYAIAGAYWPP--QYVIMDGETLE-------PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN 315 (567)
T ss_dssp EEECCSTTCTTTEEEEEEEETT--EEEEEETTTCC-------EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred eEEccccCCCCCEEEEEEccCC--eEEEEECCCCc-------EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence 5899 69988887755556 55566766652 2222221110 12233446666555443
Q ss_pred EeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCC
Q 039497 261 TRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPD 340 (642)
Q Consensus 261 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd 340 (642)
.... ..|+++|.... +.+... .+... .. .....|+||
T Consensus 316 ~~~~----g~v~~vd~~~~--------------~~~~v~-----------------~i~~~-~~-------~~d~~~~pd 352 (567)
T 1qks_A 316 VKET----GKILLVDYTDL--------------NNLKTT-----------------EISAE-RF-------LHDGGLDGS 352 (567)
T ss_dssp ETTT----TEEEEEETTCS--------------SEEEEE-----------------EEECC-SS-------EEEEEECTT
T ss_pred ecCC----CeEEEEecCCC--------------ccceee-----------------eeecc-cc-------ccCceECCC
Confidence 2221 14444443110 000000 00000 00 013479999
Q ss_pred CCEEEEEecCCCceeEEEEECCCCCeeEEeec-CCce----eee-eecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCC
Q 039497 341 GGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD-RTAF----YNS-WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414 (642)
Q Consensus 341 g~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~~~~----~~~-~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 414 (642)
|++++.... ....|.++|+++++......- +... .+. ++|++..++++.. .+++.+.+++.+. .
T Consensus 353 gr~~~va~~--~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~-----~g~~~Vsvid~~~--~- 422 (567)
T 1qks_A 353 HRYFITAAN--ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSH-----MGDDSVALIGTDP--E- 422 (567)
T ss_dssp SCEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEB-----SSSSEEEEEECCT--T-
T ss_pred CCEEEEEeC--CCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCC-----CCCCeEEEecCCC--C-
Confidence 998877663 356799999998876544432 2222 233 5788888877664 2345666666543 1
Q ss_pred CCCCCCCcc-ccceEEccccCCCCccCcEECCCCCeEEEEeCCCC----ceeEEEEECCCC-----ccccceeeC-----
Q 039497 415 SDDNNREEI-PCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG----HKNLFVLDAVNG-----EFNGDIRQL----- 479 (642)
Q Consensus 415 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g----~~~l~~~d~~~g-----~~~~~~~~l----- 479 (642)
..... -...+.+.... .....+..+||+++++....-+. ...|.++|+.+. .. ..+.+
T Consensus 423 ----~~~~~~~kvv~~i~~~g-~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~--~~~~~~~~~~ 495 (567)
T 1qks_A 423 ----GHPDNAWKILDSFPALG-GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDP--EFKTLPIAEW 495 (567)
T ss_dssp ----TCTTTBTSEEEEEECSC-SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCC--CEEEECHHHH
T ss_pred ----CCccccCEEEEEEecCC-CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCC--CcEEeccccc
Confidence 00000 00334443322 22334678999999887653221 348999998765 21 01222
Q ss_pred ---CCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497 480 ---TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530 (642)
Q Consensus 480 ---~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 530 (642)
........++.|+|||++++++.-... .....|.++|.++.++.....
T Consensus 496 ~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~---~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 496 AGITEGQPRVVQGEFNKDGTEVWFSVWNGK---DQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp HTCCSSCCEEEEEEECTTSSEEEEEEECCT---TSCCEEEEEETTTTEEEEEEC
T ss_pred cccCCCCcceEeeeECCCCCEEEEEeecCC---CCCCcEEEEECCCceEEEEeC
Confidence 122345678899999999999853211 034569999999887765543
No 165
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.51 E-value=9.2e-09 Score=111.58 Aligned_cols=496 Identities=12% Similarity=0.057 Sum_probs=265.7
Q ss_pred ceEEEEeecCCceeeeEEEecCCCCCCCCC--ceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcc-
Q 039497 5 GTIVFTTVGRPYYGFDVFSIKSPFVNAPKF--HEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKT- 81 (642)
Q Consensus 5 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~- 81 (642)
-.+.|+ ...+|.++++.+ . +.+.+...-.......|. +.+.+|+|+.. ....|+.+...|...
T Consensus 10 ~~~~~~------~~~~I~~i~~~~-----~~~~~~~~~~~~~~~~~ld~~-~~~~~ly~sD~--~~~~I~r~~~~g~~~~ 75 (619)
T 3s94_A 10 PLLLYA------NRRDLRLVDATN-----GKENATIVVGGLEDAAAVDFV-FSHGLIYWSDV--SEEAIKRTEFNKTESV 75 (619)
T ss_dssp CCEEEE------CSSBEEEECCC--------------CBCCSCEEEEEEE-TTTTEEEEEET--TTTEEEEEEC-----C
T ss_pred ceEEEe------ccccEEEEeCCC-----CcceEEEEEcCCCceEEEEEE-eCCCEEEEEEC--CCCeEEEEEccCCCce
Confidence 356777 567999999987 4 233344444445566788 98888887643 344677775555311
Q ss_pred cccCCCCCCcccccccc--CCCEEEEEEeccCCCcccccccceEEEEccCCceEeccc-CCCccCCceeCCCCcEEEEEe
Q 039497 82 ELLPSIPCSLFHDRPVA--RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTP-YGVVDYSPSVSYSGKFIAVAS 158 (642)
Q Consensus 82 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~-~~~~~~~~~~SPDG~~la~~~ 158 (642)
..+.. ..+......++ .++.|+++.... +.|.+.++++...+.|.. ........++.|.+.+|.|+.
T Consensus 76 ~~v~~-~~~~~P~GlAvD~~~~~ly~~d~~~---------~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD 145 (619)
T 3s94_A 76 QNVVV-SGLLSPDGLACDWLGEKLYWTDSET---------NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTD 145 (619)
T ss_dssp EEEEC-SSCSCEEEEEEETTTTEEEEEETTT---------TEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEE
T ss_pred EEEEe-CCCCCcCeEEEEecCCEEEEEeCCC---------CEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEec
Confidence 11100 11111223333 477888876542 268999998876666653 333456688999888888876
Q ss_pred cCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCCcc---eEeeCC-eEEEEEecCCCceEEEEEecCCCcccccCCcc
Q 039497 159 YESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWP---TWSGDS-TIYFHRQADDGWWSIFRVSFPENLEFLGFPIA 234 (642)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~---~wspdg-~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~ 234 (642)
... ...|+..++++...+.+......+| +..+++ ++|++. .. ...|++++.++. .
T Consensus 146 ~g~----------~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD-~~--~~~I~~~~~dG~--------~ 204 (619)
T 3s94_A 146 WGE----------VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWAD-AK--LNFIHKSNLDGT--------N 204 (619)
T ss_dssp CSS----------SCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEE-TT--TCCEEEESSSCC--------E
T ss_pred cCC----------CCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEe-CC--CCeEEEecCCCC--------c
Confidence 432 3478888888776666655444444 788766 555554 33 348999999876 3
Q ss_pred ceeeCC-CCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCC-eecCCCCEEEEE-Eee---cCCCC-
Q 039497 235 PTRVTP-PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNP-FVSANSEFIGYH-RFR---GESTE- 307 (642)
Q Consensus 235 ~~~l~~-~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~spDg~~l~~~-~~~---~~~~~- 307 (642)
.+.+.. .......+++ ++..|+++.... ..|+..|...+........ ...|.+ |.+. ... +....
T Consensus 205 ~~~~~~~~~~~P~gi~~--~~~~ly~td~~~----~~V~~~d~~tg~~~~~i~~~~~~p~~--i~v~~~~~qp~~~n~C~ 276 (619)
T 3s94_A 205 RQAVVKGSLPHPFALTL--FEDILYWTDWST----HSILACNKYTGEGLREIHSDIFSPMD--IHAFSQQRQPNATNPCG 276 (619)
T ss_dssp EC---------CCCEEE--SSSEEEEECTTT----CSEEEEESSSCCCCEECCSCCCCCSE--EEECCGGGSCCCCCTTT
T ss_pred cEEEEeCCCCCceEEEE--eCCEEEEecCCC----CEEEEEECCCCcccEEEecCCCCCcE--EEEEccccCCCcccccc
Confidence 333332 1112233444 444777754332 2566666532221100000 001111 1111 000 00000
Q ss_pred -CCcccceEeeccCCCceeEEeeeCCCccEEcCCC--------CEEEEEecCCCceeEEEEECCCCCeeEEee----cCC
Q 039497 308 -GQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDG--------GLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRT 374 (642)
Q Consensus 308 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg--------~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~ 374 (642)
+...=..+..+........- .-. ....+.+|+ .+|+|.. ...|..++++......+.. -..
T Consensus 277 ~~ng~Cs~lCl~~~~~~~~~C-~C~-~g~~l~~d~~~C~~~~~~~Ll~~~----~~~i~~i~l~~~~~~~~~~~~~~l~~ 350 (619)
T 3s94_A 277 IDNGGCSHLCLMSPVKPFYQC-ACP-TGVKLLENGKTCKDGATELLLLAR----RTDLRRISLDTPDFTDIVLQLEDIRH 350 (619)
T ss_dssp TTGGGCSSEEEECSSTTSEEE-ECC-TTCCBCTTSSCBCSSCSEEEEEEE----SSCEEEEESSSTTCCCEECCCSCCSS
T ss_pred CCCCcccceEECCCCCCCceE-eCC-chheecccCcccCCCCceEEEEEc----ccceEEEecCCCccceeEEeccccCc
Confidence 00000000000000000000 000 011223332 2455543 2578888888765433221 234
Q ss_pred ceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEe
Q 039497 375 AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRS 454 (642)
Q Consensus 375 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~ 454 (642)
...+.|.+.+..|+++.. ..-.|+.+.. + +. ..+.+..........+++.+.++.|+++.
T Consensus 351 ~~~ld~d~~~~~ly~sD~--------~~~~I~r~~~--~-----g~-----~~~~v~~~~~~~p~GlAvD~~~~~lY~tD 410 (619)
T 3s94_A 351 AIAIDYDPVEGYIYWTDD--------EVRAIRRSFI--D-----GS-----GSQFVVTAQIAHPDGIAVDWVARNLYWTD 410 (619)
T ss_dssp EEEEEEETTTTEEEEEET--------TTTEEEEEET--T-----SC-----SCEEEECSSCSCCCEEEEETTTTEEEEEE
T ss_pred cEEEEEEcCCCeEEEEeC--------CCCeEEEEEc--C-----CC-----ccEEEEECCCCCcCceEEecccCcEEEEe
Confidence 567889998888998873 2334666666 3 22 22333222213456688888788898886
Q ss_pred CCCCceeEEEEECCCCccccceeeCCC-CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCC
Q 039497 455 GRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP 533 (642)
Q Consensus 455 ~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~ 533 (642)
. +...|.+.++++.. .+.|.. .-.....+++.|...+||++.... ...|++.++++...+.+.....
T Consensus 411 ~--~~~~I~v~~~~G~~----~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~------~~~I~r~~~dG~~~~~l~~~~l 478 (619)
T 3s94_A 411 T--GTDRIEVTRLNGTM----RKILISEDLEEPRAIVLDPMVGYMYWTDWGE------IPKIERAALDGSDRVVLVNTSL 478 (619)
T ss_dssp T--TTTEEEEEETTSCS----CEEEECTTCCSEEEEEEETTTTEEEEEECSS------SCEEEEEETTSCSCEEEECSSC
T ss_pred C--CCCcEEEEeCCCCe----EEEEEECCCCCeeeEEEEcCCCcEEEecCCC------CCEEEEEccCCCccEEEEeCCC
Confidence 5 44589999988544 344443 223445678999877888886532 3469999999887776654322
Q ss_pred CCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCC-CCCCCCcEEecCCc
Q 039497 534 EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN-GYENGTPAWHPGNQ 612 (642)
Q Consensus 534 ~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~-~~~~~~~~~s~dg~ 612 (642)
. .+..+++++++++||++....+ .|+.++++|...+.+... ......++...+ .
T Consensus 479 ~--------~P~GlalD~~~~~LY~aD~~~~----------------~I~~~~~dG~~~~~~~~~~l~~P~glav~~~-~ 533 (619)
T 3s94_A 479 G--------WPNGLALDYDEGKIYWGDAKTD----------------KIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD-Y 533 (619)
T ss_dssp S--------CEEEEEEETTTTEEEEEETTTT----------------EEEEEESSSCCCEEEEECCCCSSCCEEEETT-E
T ss_pred C--------CCeeeEEcccCCEEEEEECCCC----------------EEEEEecCCCceEEEeccCCCCcEEEEEECC-E
Confidence 2 4567899999999999876532 899999998876655432 223345555444 3
Q ss_pred eEEe
Q 039497 613 LDLG 616 (642)
Q Consensus 613 ~~~~ 616 (642)
+|++
T Consensus 534 ly~t 537 (619)
T 3s94_A 534 VYWT 537 (619)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 3443
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.51 E-value=1.1e-11 Score=126.25 Aligned_cols=317 Identities=13% Similarity=0.057 Sum_probs=165.8
Q ss_pred CCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC-CcceEeeCCeEEEEEecC-----CC--ceEEEE
Q 039497 148 SYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG-GWPTWSGDSTIYFHRQAD-----DG--WWSIFR 219 (642)
Q Consensus 148 SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~wspdg~~~~~~~~~-----~g--~~~l~~ 219 (642)
.||+++++....... ......|+++|.++++......... ..++++|||+.+|+.+.. .| .-.|..
T Consensus 12 ~~~~~~~yv~~~~~~------~~~d~~v~v~D~~t~~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v 85 (361)
T 2oiz_A 12 APQENRIYVMDSVFM------HLTESRVHVYDYTNGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEV 85 (361)
T ss_dssp SCGGGEEEEEECCGG------GGGGCEEEEEETTTCCEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEE
T ss_pred CCCCCEEEEECCCCC------ccccCeEEEEECCCCeEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEE
Confidence 368888766543210 0013479999998887654333211 256999999877776320 11 225777
Q ss_pred EecCCCcccccCCccceeeCCC------CCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCC
Q 039497 220 VSFPENLEFLGFPIAPTRVTPP------GVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANS 293 (642)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg 293 (642)
++..+.+ ....+... +.....+++||||++|+++.... ...+.++|+...
T Consensus 86 ~d~~t~~-------~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~---~~~v~v~d~~~~-------------- 141 (361)
T 2oiz_A 86 WDADKLT-------FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASP---ATSIGIVDVAKG-------------- 141 (361)
T ss_dssp EETTTCC-------EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESS---SEEEEEEETTTT--------------
T ss_pred EECcCCc-------EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCC---CCeEEEEECCCC--------------
Confidence 8887763 22333211 22355688999999988865321 236788877221
Q ss_pred CEEEEEEeecCCCCCCcccceEeeccCCCceeEEeee-CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-
Q 039497 294 EFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRL-NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK- 371 (642)
Q Consensus 294 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~- 371 (642)
+.+.. +...... ........ .......++||+.+++.....+.. +..... .....
T Consensus 142 ~~~~~----------------~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~-~~~~~~-----~~~~~~ 198 (361)
T 2oiz_A 142 DYVED----------------VTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKV-ASQSRS-----KQMFSV 198 (361)
T ss_dssp EEEEE----------------EGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSE-EEEEEC-----CCCSCT
T ss_pred cEEEE----------------EecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcE-eeeccc-----cceEcC
Confidence 10000 0000000 00000000 001224455665444433211111 101110 00001
Q ss_pred cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc--------cCCCCccCcEE
Q 039497 372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK--------EETGNNAFPSC 443 (642)
Q Consensus 372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~ 443 (642)
......+.++|+++.+++... .+.+.++++.. + ...+. ....+.. .+ .....+++
T Consensus 199 ~~~~~~~~~~~~g~~~~~~~~-------~~~v~v~d~~~--~------~~~~~-~~~~~~~~~~~~~~~~p-~g~~~~a~ 261 (361)
T 2oiz_A 199 KDDPIFIAPALDKDKAHFVSY-------YGNVYSADFSG--D------EVKVD-GPWSLLNDEDKAKNWVP-GGYNLVGL 261 (361)
T ss_dssp TTSCBCSCCEECSSEEEEEBT-------TSEEEEEECSS--S------SCEEE-EEEESCCHHHHHTTCEE-CCSSCEEE
T ss_pred CCCceEEEecccCCEEEEEeC-------CCeEEEEEecC--C------Cceec-ccccccCcccccccccc-CCeeEEEE
Confidence 122234456888988888763 34444444422 1 10000 0001100 01 11234789
Q ss_pred CCCCCeEEEEeCCC--------CceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeE
Q 039497 444 SPDGKFLVFRSGRS--------GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSL 515 (642)
Q Consensus 444 SpDg~~l~~~~~~~--------g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l 515 (642)
+|||++++.....+ ....|+++|+++++. +..+..+. ...++|+|||++||..+. +. |
T Consensus 262 ~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~---v~~i~~~~--p~~ia~spdg~~l~v~n~-~~--------v 327 (361)
T 2oiz_A 262 HRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR---VARIPGRD--ALSMTIDQQRNLMLTLDG-GN--------V 327 (361)
T ss_dssp ETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE---EEEEECTT--CCEEEEETTTTEEEEECS-SC--------E
T ss_pred ecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE---EEEEecCC--eeEEEECCCCCEEEEeCC-Ce--------E
Confidence 99999988765311 234899999999986 56665554 778899999998776654 32 9
Q ss_pred EEEeCCCCceEEeee-cCCCCCCCcccccccceEEcCCCCE
Q 039497 516 YVIKPDGSGLRRIHV-AGPEGSGDVDRERINHVCFSADGEW 555 (642)
Q Consensus 516 ~~~d~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~S~Dg~~ 555 (642)
.+||+++++++.+.. ..... .+..+.++|||++
T Consensus 328 ~v~D~~t~~l~~~~~i~~~G~-------~P~~~~~~p~G~~ 361 (361)
T 2oiz_A 328 NVYDISQPEPKLLRTIEGAAE-------ASLQVQFHPVGGT 361 (361)
T ss_dssp EEEECSSSSCEEEEEETTSCS-------SEEEEEECCCSCC
T ss_pred EEEECCCCcceeeEEeccCCC-------CcEEEEecCCCCC
Confidence 999999984444433 12222 4577899999963
No 167
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.51 E-value=4.2e-11 Score=125.84 Aligned_cols=307 Identities=12% Similarity=0.127 Sum_probs=191.9
Q ss_pred eeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---cceEeeCCeEEEEEecCCCceEEEEEec
Q 039497 146 SVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---WPTWSGDSTIYFHRQADDGWWSIFRVSF 222 (642)
Q Consensus 146 ~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---~~~wspdg~~~~~~~~~~g~~~l~~~~~ 222 (642)
.+++||++||....++ .|.+|++.+++.......+.. .+.|+ +.++++. ..+|... .++.
T Consensus 124 ~~~~~g~~l~sg~~dg------------~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~-~~dg~i~--vwd~ 186 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDN------------TLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISG-STDRTLK--VWNA 186 (445)
T ss_dssp EEEEETTEEEEEETTS------------CEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEE-ETTSCEE--EEET
T ss_pred EEEEcCCEEEEEECCC------------cEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEE-eCCCeEE--EEEC
Confidence 5788999999888766 799999998876555443332 23555 4566666 4577544 4566
Q ss_pred CCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEee
Q 039497 223 PENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFR 302 (642)
Q Consensus 223 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~ 302 (642)
.++. ....+..+...+..+.+ +++.|+....++ .+.+||+.. ++.+....
T Consensus 187 ~~~~-------~~~~~~~h~~~v~~~~~--~~~~l~s~s~dg-----~i~~wd~~~--------------~~~~~~~~-- 236 (445)
T 2ovr_B 187 ETGE-------CIHTLYGHTSTVRCMHL--HEKRVVSGSRDA-----TLRVWDIET--------------GQCLHVLM-- 236 (445)
T ss_dssp TTTE-------EEEEECCCSSCEEEEEE--ETTEEEEEETTS-----EEEEEESSS--------------CCEEEEEE--
T ss_pred CcCc-------EEEEECCCCCcEEEEEe--cCCEEEEEeCCC-----EEEEEECCC--------------CcEEEEEc--
Confidence 6653 44555555555555555 567777755443 888998732 11111110
Q ss_pred cCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeee
Q 039497 303 GESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSW 380 (642)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~ 380 (642)
.....+ ....+ +|+.++.... ...|.++|+.+++...... ...+..+.|
T Consensus 237 -----------------~~~~~v-------~~~~~--~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 287 (445)
T 2ovr_B 237 -----------------GHVAAV-------RCVQY--DGRRVVSGAY---DFMVKVWDPETETCLHTLQGHTNRVYSLQF 287 (445)
T ss_dssp -----------------CCSSCE-------EEEEE--CSSCEEEEET---TSCEEEEEGGGTEEEEEECCCSSCEEEEEE
T ss_pred -----------------CCcccE-------EEEEE--CCCEEEEEcC---CCEEEEEECCCCcEeEEecCCCCceEEEEE
Confidence 000011 11233 6777777654 3678888987776444333 345666666
Q ss_pred ecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCce
Q 039497 381 SPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHK 460 (642)
Q Consensus 381 spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~ 460 (642)
+++.|+..+. ++.+++|++.. +. ....+..+. ..+. .++++++.|+..+. +.
T Consensus 288 --~~~~l~~~~~-------d~~i~i~d~~~--------~~-----~~~~~~~~~-~~v~--~~~~~~~~l~~~~~---dg 339 (445)
T 2ovr_B 288 --DGIHVVSGSL-------DTSIRVWDVET--------GN-----CIHTLTGHQ-SLTS--GMELKDNILVSGNA---DS 339 (445)
T ss_dssp --CSSEEEEEET-------TSCEEEEETTT--------CC-----EEEEECCCC-SCEE--EEEEETTEEEEEET---TS
T ss_pred --CCCEEEEEeC-------CCeEEEEECCC--------CC-----EEEEEcCCc-ccEE--EEEEeCCEEEEEeC---CC
Confidence 8888887764 68899999855 22 444454443 3333 44557778777663 34
Q ss_pred eEEEEECCCCccccceeeCCC---CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEee-e---cCC
Q 039497 461 NLFVLDAVNGEFNGDIRQLTD---GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH-V---AGP 533 (642)
Q Consensus 461 ~l~~~d~~~g~~~~~~~~l~~---~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-~---~~~ 533 (642)
.|.+||+.+++. +..+.. +...+..+.| ++++|+..+.++. |.+||+.+++..... . ...
T Consensus 340 ~i~vwd~~~~~~---~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~--------v~iwd~~~~~~~~~~~~~~~~~~ 406 (445)
T 2ovr_B 340 TVKIWDIKTGQC---LQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGT--------VKLWDLKTGEFIRNLVTLESGGS 406 (445)
T ss_dssp CEEEEETTTCCE---EEEECSTTSCSSCEEEEEE--CSSEEEEEETTSE--------EEEEETTTCCEEEEEEECTTGGG
T ss_pred eEEEEECCCCcE---EEEEccCCCCCCCEEEEEE--CCCEEEEEeCCCe--------EEEEECCCCceeeeeeccccCCC
Confidence 799999988876 555553 3344555666 4678888877654 999999887654332 1 122
Q ss_pred CCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC
Q 039497 534 EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589 (642)
Q Consensus 534 ~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 589 (642)
.+ .+..+.|+|+|..|+..+.++.. ...|+++|.+.
T Consensus 407 ~~-------~v~~~~~s~~~~~la~~~~dg~~-------------~~~l~v~df~~ 442 (445)
T 2ovr_B 407 GG-------VVWRIRASNTKLVCAVGSRNGTE-------------ETKLLVLDFDV 442 (445)
T ss_dssp TC-------EEEEEEECSSEEEEEEECSSSSS-------------CCEEEEEECCC
T ss_pred Cc-------eEEEEEecCCEEEEEEcccCCCC-------------ccEEEEEECCC
Confidence 33 57889999999988888776531 23688888765
No 168
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.50 E-value=7.2e-12 Score=127.51 Aligned_cols=273 Identities=8% Similarity=0.047 Sum_probs=167.8
Q ss_pred cceEeeC---CeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeE
Q 039497 195 WPTWSGD---STIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHI 271 (642)
Q Consensus 195 ~~~wspd---g~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i 271 (642)
.++|+|+ |.++++. ..+|...||.+...+.. ....+..+...+..++|+|+|++|+....++ .+
T Consensus 44 ~~~~~~~~~~g~~l~~~-~~dg~i~iw~~~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg-----~v 110 (368)
T 3mmy_A 44 CLSFSPPTLPGNFLIAG-SWANDVRCWEVQDSGQT-------IPKAQQMHTGPVLDVCWSDDGSKVFTASCDK-----TA 110 (368)
T ss_dssp EEEECCTTSSSEEEEEE-ETTSEEEEEEECTTSCE-------EEEEEEECSSCEEEEEECTTSSEEEEEETTS-----EE
T ss_pred EEEEcCCCCCceEEEEE-CCCCcEEEEEcCCCCce-------eEEEeccccCCEEEEEECcCCCEEEEEcCCC-----cE
Confidence 3699999 5888877 56786666666542321 2245555666788899999999999865444 88
Q ss_pred EEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEE--cCCCCEEEEEec
Q 039497 272 EIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSF--SPDGGLIVFNHD 349 (642)
Q Consensus 272 ~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--spdg~~l~~~~~ 349 (642)
.+||+.. ++.+.+.. .. .......| +|+++.|+....
T Consensus 111 ~iwd~~~--------------~~~~~~~~-----------------~~----------~~v~~~~~~~~~~~~~l~~~~~ 149 (368)
T 3mmy_A 111 KMWDLSS--------------NQAIQIAQ-----------------HD----------APVKTIHWIKAPNYSCVMTGSW 149 (368)
T ss_dssp EEEETTT--------------TEEEEEEE-----------------CS----------SCEEEEEEEECSSCEEEEEEET
T ss_pred EEEEcCC--------------CCceeecc-----------------cc----------CceEEEEEEeCCCCCEEEEccC
Confidence 8998732 11111110 00 01123467 899987777654
Q ss_pred CCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceE
Q 039497 350 FELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVK 428 (642)
Q Consensus 350 ~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 428 (642)
...|.++|+..++...... ......+.+. +..++.... ++.+.+|++.. . .. ...
T Consensus 150 ---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~i~~~~~~~--~------~~----~~~ 205 (368)
T 3mmy_A 150 ---DKTLKFWDTRSSNPMMVLQLPERCYCADVI--YPMAVVATA-------ERGLIVYQLEN--Q------PS----EFR 205 (368)
T ss_dssp ---TSEEEEECSSCSSCSEEEECSSCEEEEEEE--TTEEEEEEG-------GGCEEEEECSS--S------CE----EEE
T ss_pred ---CCcEEEEECCCCcEEEEEecCCCceEEEec--CCeeEEEeC-------CCcEEEEEecc--c------cc----hhh
Confidence 3678999988776554443 4444444444 455665553 67888888855 1 10 222
Q ss_pred EccccCCCCccCcEECCCCCe----EEEEeCCCCceeEEEEECCCCccccceeeCCCCCC------------cccceeEe
Q 039497 429 ILTKEETGNNAFPSCSPDGKF----LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW------------IDTMPSWS 492 (642)
Q Consensus 429 ~l~~~~~~~~~~~~~SpDg~~----l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~------------~~~~~~~s 492 (642)
.+............+.+++.. ++..+. ...|.+|++..+........+..+.. .+..++|+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 282 (368)
T 3mmy_A 206 RIESPLKHQHRCVAIFKDKQNKPTGFALGSI---EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFH 282 (368)
T ss_dssp ECCCSCSSCEEEEEEEECTTSCEEEEEEEET---TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEEC
T ss_pred hccccccCCCceEEEcccCCCCCCeEEEecC---CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEe
Confidence 222222123334455554443 665553 34788888876531000233333322 46778999
Q ss_pred cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA 564 (642)
Q Consensus 493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~ 564 (642)
|||++|+..+.++. |++||+.+++...... .+.. .+..++|+|||++|+..+.++.
T Consensus 283 p~~~~l~s~~~dg~--------i~iwd~~~~~~~~~~~-~~~~-------~v~~~~~s~~g~~l~~~s~d~~ 338 (368)
T 3mmy_A 283 PVHGTLATVGSDGR--------FSFWDKDARTKLKTSE-QLDQ-------PISACCFNHNGNIFAYASSYDW 338 (368)
T ss_dssp TTTCCEEEEETTSC--------EEEEETTTTEEEEECC-CCSS-------CEEEEEECTTSSCEEEEECCCS
T ss_pred cCCCEEEEEccCCe--------EEEEECCCCcEEEEec-CCCC-------CceEEEECCCCCeEEEEecccc
Confidence 99999988887765 9999998876544332 3333 6788999999999999987653
No 169
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.50 E-value=1.7e-12 Score=131.34 Aligned_cols=230 Identities=10% Similarity=-0.009 Sum_probs=142.5
Q ss_pred cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cC--CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DR--TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~--~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
+.++++++.++.... ...|+++|+++++...... .. ....+.|+|||+.+++... ....+.+|++..
T Consensus 5 ~~~~~~~~~~v~~~~---~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~------~~~~i~~~d~~t- 74 (349)
T 1jmx_B 5 PALKAGHEYMIVTNY---PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN------HYGDIYGIDLDT- 74 (349)
T ss_dssp CCCCTTCEEEEEEET---TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET------TTTEEEEEETTT-
T ss_pred ccccCCCEEEEEeCC---CCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC------CCCcEEEEeCCC-
Confidence 456777665444432 4789999999887655444 33 5788999999998887763 356666666533
Q ss_pred cCCCCCCCCCccccceEEccccC-----CCCccCcEECCCCCeEEEEeCC---------CCceeEEEEECCCCcccccee
Q 039497 412 LDPSDDNNREEIPCDVKILTKEE-----TGNNAFPSCSPDGKFLVFRSGR---------SGHKNLFVLDAVNGEFNGDIR 477 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~SpDg~~l~~~~~~---------~g~~~l~~~d~~~g~~~~~~~ 477 (642)
+. ....+.... ......++|||||++|++.... .....|+++|+.+++....+.
T Consensus 75 --------~~----~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 142 (349)
T 1jmx_B 75 --------CK----NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR 142 (349)
T ss_dssp --------TE----EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE
T ss_pred --------Cc----EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceee
Confidence 21 222332211 0225678999999999988742 012489999998865300011
Q ss_pred eCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCC----------------C---
Q 039497 478 QLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSG----------------D--- 538 (642)
Q Consensus 478 ~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~----------------~--- 538 (642)
.+ ..+..+..++|+|||+ |++. ... |+++|+.+++............. .
T Consensus 143 ~~-~~~~~~~~~~~s~dg~-l~~~-~~~---------i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (349)
T 1jmx_B 143 TF-PMPRQVYLMRAADDGS-LYVA-GPD---------IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEF 210 (349)
T ss_dssp EE-ECCSSCCCEEECTTSC-EEEE-SSS---------EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEE
T ss_pred ec-cCCCcccceeECCCCc-EEEc-cCc---------EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeE
Confidence 12 2233456678999999 6653 221 99999988776544322210000 0
Q ss_pred -c----------------------------------------ccccccceEEcC-CCCEEEEEEecCCcccCCCCCCCCC
Q 039497 539 -V----------------------------------------DRERINHVCFSA-DGEWLLFTANLGAVMAEPVSWPNQF 576 (642)
Q Consensus 539 -~----------------------------------------~~~~~~~~~~S~-Dg~~l~~~~~~~~~~~~~~~~~~~~ 576 (642)
. ....+..+.||| ||++|++. .+
T Consensus 211 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~------------- 275 (349)
T 1jmx_B 211 SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LN------------- 275 (349)
T ss_dssp EEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ES-------------
T ss_pred EeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cC-------------
Confidence 0 000233567789 99988877 21
Q ss_pred CCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEee
Q 039497 577 QPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 577 ~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~ 617 (642)
.|++||+.+++.......+.....++|+|||++++..
T Consensus 276 ----~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 312 (349)
T 1jmx_B 276 ----RLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLG 312 (349)
T ss_dssp ----EEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEE
T ss_pred ----eEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEe
Confidence 8999999888764443334456789999999776553
No 170
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.50 E-value=8.5e-11 Score=119.78 Aligned_cols=302 Identities=10% Similarity=0.048 Sum_probs=167.0
Q ss_pred eCCeEEEEEec-CCCce-EEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEec-----cCCceeeEE
Q 039497 200 GDSTIYFHRQA-DDGWW-SIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRR-----KNRNFRHIE 272 (642)
Q Consensus 200 pdg~~~~~~~~-~~g~~-~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~-----~~~~~~~i~ 272 (642)
||++.+|+.+. ..... .|+.+|..++ +.......+... .+++||||++|+++... ++.....+.
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~--------~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~ 100 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSG--------SILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVE 100 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCC--------eEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEE
Confidence 77777777632 22212 7888998887 333323333334 88999999999987532 111223566
Q ss_pred EEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCC
Q 039497 273 IYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFEL 352 (642)
Q Consensus 273 ~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 352 (642)
++|..+.. .+.. ..+...... ........+.|||||++|++.... .
T Consensus 101 viD~~t~~--------------~~~~-----------------i~~~~~~~~--~~g~~p~~~~~spDG~~l~v~n~~-~ 146 (373)
T 2mad_H 101 VFDPVTFL--------------PIAD-----------------IELPDAPRF--DVGPYSWMNANTPNNADLLFFQFA-A 146 (373)
T ss_pred EEECCCCc--------------EEEE-----------------EECCCcccc--ccCCCccceEECCCCCEEEEEecC-C
Confidence 66652111 0000 001000000 000112356899999998886532 2
Q ss_pred ceeEEEEECCCCCeeEE-eecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497 353 NAGIKIAKSDGSKRWTL-IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT 431 (642)
Q Consensus 353 ~~~l~~~d~~~~~~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 431 (642)
...|.++| ++++.... .... ..+.+.|+++..++... .++.+.+++. . ++ ......
T Consensus 147 ~~~v~viD-~t~~~~~~~i~~~--~~~~~~~~~~~~~~~~~------~dg~~~~vd~-~--------g~-----~~~~~~ 203 (373)
T 2mad_H 147 GPAVGLVV-QGGSSDDQLLSSP--TCYHIHPGAPSTFYLLC------AQGGLAKTDH-A--------GG-----AAGAGL 203 (373)
T ss_pred CCeEEEEE-CCCCEEeEEcCCC--ceEEEEeCCCceEEEEc------CCCCEEEEEC-C--------Cc-----EEEEEe
Confidence 46799999 88876544 3321 12456677766655442 2455555544 3 11 111110
Q ss_pred -----ccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC--C--------CCCcccceeEecCCC
Q 039497 432 -----KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT--D--------GPWIDTMPSWSPKGD 496 (642)
Q Consensus 432 -----~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~--~--------~~~~~~~~~~spdG~ 496 (642)
.........+.+++++..++|.+.. ..++++|+.++.. ..+..+. . .+.....+.++|||+
T Consensus 204 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~---~~v~vid~~~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~ 279 (373)
T 2mad_H 204 VGAMLTAAQNLLTQPAQANKSGRIVWPVYS---GKILQADISAAGA-TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD 279 (373)
T ss_pred ccccccCCcceeecceeEecCCEEEEEcCC---ceEEEEeccCCcc-eEeeeeeecCCcccccceecCceEeEEECCCCC
Confidence 1110122346788888888887732 3899999976542 0011111 0 011122357899999
Q ss_pred EEEEEecCCCCC--CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCC
Q 039497 497 LIAFSSNRHNPD--NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPN 574 (642)
Q Consensus 497 ~l~~~~~~~~~~--~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~ 574 (642)
+||......... ......|+++|+++.+...-...+ . .+..+.|||||++++|+.+.+.
T Consensus 280 ~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~-------~p~~i~~s~Dg~~~l~v~~~~~---------- 340 (373)
T 2mad_H 280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--H-------DVDAISVAQDGGPDLYALSAGT---------- 340 (373)
T ss_pred EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--C-------CcCeEEECCCCCeEEEEEcCCC----------
Confidence 988876532100 012357999999987763322222 1 3578999999996666766432
Q ss_pred CCCCCCcEEEEEcCCCceeec
Q 039497 575 QFQPYGDLYVVKLDGSGLRRL 595 (642)
Q Consensus 575 ~~~~~~~l~~~~~~~~~~~~l 595 (642)
..|.++|..++++...
T Consensus 341 -----~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 341 -----EVLHIYDAGAGDQDQS 356 (373)
T ss_pred -----CeEEEEECCCCCEEee
Confidence 2899999998775544
No 171
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.49 E-value=1.2e-11 Score=125.88 Aligned_cols=225 Identities=14% Similarity=0.059 Sum_probs=144.5
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
....++++++.++++... ...|.++|..+++...... ...+..+.|+++. ++.+. +..+++|++..
T Consensus 62 ~~~~~~~~~~~~~~~~~~--d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~--------~~~i~i~d~~~- 128 (355)
T 3vu4_A 62 SKVRMLHRTNYVAFVTGV--KEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF--IVVSY--------GDVISVFKFGN- 128 (355)
T ss_dssp CEEEECTTSSEEEEECSS--TTEEEEEETTTTEEEEEEECSSCEEEEEECSSE--EEEEE--------TTEEEEEESST-
T ss_pred EEEEEcCCCCEEEEEECC--ccEEEEEECCCCcEEEEEECCCceEEEEEcCCE--EEEEE--------cCEEEEEECCC-
Confidence 345788889988776643 3588999998876544333 5667788888764 54444 56789998854
Q ss_pred cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEE-eCCCCceeEEEEECCCCccc------------cc-ee
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR-SGRSGHKNLFVLDAVNGEFN------------GD-IR 477 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~-~~~~g~~~l~~~d~~~g~~~------------~~-~~ 477 (642)
... ....+.. ......+++ +.+++. ...+| .|.+||+.+++.. .+ +.
T Consensus 129 -------~~~----~~~~~~~----~~~~~~~s~--~~la~~sg~~~g--~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~ 189 (355)
T 3vu4_A 129 -------PWK----RITDDIR----FGGVCEFSN--GLLVYSNEFNLG--QIHITKLQSSGSATTQDQGVQQKAILGKGV 189 (355)
T ss_dssp -------TCC----BSSCCEE----EEEEEEEET--TEEEEEESSCTT--CEEEEECCC------------------CCE
T ss_pred -------Cce----eeEEecc----CCceEEEEc--cEEEEeCCCcCc--EEEEEECCCCCccccccccccccccCcccE
Confidence 101 1222221 122356777 678887 34333 7889999876500 00 25
Q ss_pred eCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-CCCCCCcccccccceEEcCCCCEE
Q 039497 478 QLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEGSGDVDRERINHVCFSADGEWL 556 (642)
Q Consensus 478 ~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~S~Dg~~l 556 (642)
.+..+...+..++|+|||++|+..+.++. .|.+||+.+++.......+ +.. .+..++|||||++|
T Consensus 190 ~~~~h~~~v~~~~~s~~g~~l~s~s~d~~-------~v~iwd~~~~~~~~~~~~g~h~~-------~v~~~~~s~~~~~l 255 (355)
T 3vu4_A 190 LIKAHTNPIKMVRLNRKSDMVATCSQDGT-------IIRVFKTEDGVLVREFRRGLDRA-------DVVDMKWSTDGSKL 255 (355)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTCS-------EEEEEETTTCCEEEEEECTTCCS-------CEEEEEECTTSCEE
T ss_pred EEEccCCceEEEEECCCCCEEEEEeCCCC-------EEEEEECCCCcEEEEEEcCCCCC-------cEEEEEECCCCCEE
Confidence 56667778889999999999988887641 2899999887665444322 444 67899999999999
Q ss_pred EEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce---eeccC--------------------C-CCCCCCcEEecCCc
Q 039497 557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL---RRLTW--------------------N-GYENGTPAWHPGNQ 612 (642)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~lt~--------------------~-~~~~~~~~~s~dg~ 612 (642)
+..+.++ .|.+|++..+.. ..+.. . ......++|++||+
T Consensus 256 ~s~s~d~-----------------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~ 318 (355)
T 3vu4_A 256 AVVSDKW-----------------TLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESS 318 (355)
T ss_dssp EEEETTC-----------------EEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSE
T ss_pred EEEECCC-----------------EEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCC
Confidence 8887664 677778765421 11111 0 01125679999998
Q ss_pred eEEeecCC
Q 039497 613 LDLGKLRL 620 (642)
Q Consensus 613 ~~~~~~~~ 620 (642)
+++.....
T Consensus 319 ~l~~~~~d 326 (355)
T 3vu4_A 319 LVVVWPHT 326 (355)
T ss_dssp EEEEETTT
T ss_pred EEEEEeCC
Confidence 88766543
No 172
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.48 E-value=7.1e-11 Score=124.09 Aligned_cols=309 Identities=10% Similarity=0.057 Sum_probs=192.9
Q ss_pred ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEE
Q 039497 196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD 275 (642)
Q Consensus 196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d 275 (642)
..++++|.++++. ..+|...+ ++..++. ....+..+...+..++++ ++.|+....++ .+.+||
T Consensus 123 ~~~~~~g~~l~sg-~~dg~i~v--wd~~~~~-------~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg-----~i~vwd 185 (445)
T 2ovr_B 123 TCLQFCGNRIVSG-SDDNTLKV--WSAVTGK-------CLRTLVGHTGGVWSSQMR--DNIIISGSTDR-----TLKVWN 185 (445)
T ss_dssp EEEEEETTEEEEE-ETTSCEEE--EETTTCC-------EEEECCCCSSCEEEEEEE--TTEEEEEETTS-----CEEEEE
T ss_pred EEEEEcCCEEEEE-ECCCcEEE--EECCCCc-------EEEEEcCCCCCEEEEEec--CCEEEEEeCCC-----eEEEEE
Confidence 3678888888877 45775444 5556653 445556666566666665 66677754443 788888
Q ss_pred eecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCcee
Q 039497 276 LTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG 355 (642)
Q Consensus 276 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 355 (642)
+... +.+... ......+. ...| +++.++..+. ...
T Consensus 186 ~~~~--------------~~~~~~-------------------~~h~~~v~-------~~~~--~~~~l~s~s~---dg~ 220 (445)
T 2ovr_B 186 AETG--------------ECIHTL-------------------YGHTSTVR-------CMHL--HEKRVVSGSR---DAT 220 (445)
T ss_dssp TTTT--------------EEEEEE-------------------CCCSSCEE-------EEEE--ETTEEEEEET---TSE
T ss_pred CCcC--------------cEEEEE-------------------CCCCCcEE-------EEEe--cCCEEEEEeC---CCE
Confidence 7321 111100 00001111 1233 4566666553 367
Q ss_pred EEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcccc
Q 039497 356 IKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE 433 (642)
Q Consensus 356 l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 433 (642)
|.++|+.+++...... ...+..+.| +++.|+..+. ++.+.+|++.. +. ....+..+
T Consensus 221 i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-------dg~i~iwd~~~--------~~-----~~~~~~~~ 278 (445)
T 2ovr_B 221 LRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY-------DFMVKVWDPET--------ET-----CLHTLQGH 278 (445)
T ss_dssp EEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET-------TSCEEEEEGGG--------TE-----EEEEECCC
T ss_pred EEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC-------CCEEEEEECCC--------Cc-----EeEEecCC
Confidence 8889998877554443 445666666 7888887764 68899998755 12 34455544
Q ss_pred CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCce
Q 039497 434 ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF 513 (642)
Q Consensus 434 ~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~ 513 (642)
. ..+..+.| |+++|+..+.+ ..|.+||+.+++. +..+..+...+. .+++++++|+..+.++.
T Consensus 279 ~-~~v~~~~~--~~~~l~~~~~d---~~i~i~d~~~~~~---~~~~~~~~~~v~--~~~~~~~~l~~~~~dg~------- 340 (445)
T 2ovr_B 279 T-NRVYSLQF--DGIHVVSGSLD---TSIRVWDVETGNC---IHTLTGHQSLTS--GMELKDNILVSGNADST------- 340 (445)
T ss_dssp S-SCEEEEEE--CSSEEEEEETT---SCEEEEETTTCCE---EEEECCCCSCEE--EEEEETTEEEEEETTSC-------
T ss_pred C-CceEEEEE--CCCEEEEEeCC---CeEEEEECCCCCE---EEEEcCCcccEE--EEEEeCCEEEEEeCCCe-------
Confidence 4 55666666 88888877743 4799999998886 566665544444 44556888888877664
Q ss_pred eEEEEeCCCCceEEeeec--CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc
Q 039497 514 SLYVIKPDGSGLRRIHVA--GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG 591 (642)
Q Consensus 514 ~l~~~d~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 591 (642)
|.+||+.+++....... .+.. .+..+.| +++.|+..+.++ .|.+|++..++
T Consensus 341 -i~vwd~~~~~~~~~~~~~~~~~~-------~v~~~~~--~~~~l~s~~~dg-----------------~v~iwd~~~~~ 393 (445)
T 2ovr_B 341 -VKIWDIKTGQCLQTLQGPNKHQS-------AVTCLQF--NKNFVITSSDDG-----------------TVKLWDLKTGE 393 (445)
T ss_dssp -EEEEETTTCCEEEEECSTTSCSS-------CEEEEEE--CSSEEEEEETTS-----------------EEEEEETTTCC
T ss_pred -EEEEECCCCcEEEEEccCCCCCC-------CEEEEEE--CCCEEEEEeCCC-----------------eEEEEECCCCc
Confidence 99999987765443321 1222 4556666 567777776554 78899988776
Q ss_pred e-eec-----cCCCCCCCCcEEecCCceEEeecCCCcccccceeeeec
Q 039497 592 L-RRL-----TWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFD 633 (642)
Q Consensus 592 ~-~~l-----t~~~~~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~ 633 (642)
. ..+ ..+...+..++|+|++.++++....|.....+....|+
T Consensus 394 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 394 FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp EEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred eeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence 4 344 13445567899999999988877666434444444444
No 173
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.47 E-value=3.4e-12 Score=127.56 Aligned_cols=241 Identities=13% Similarity=0.069 Sum_probs=146.2
Q ss_pred CCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeec
Q 039497 239 TPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPV 318 (642)
Q Consensus 239 ~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~ 318 (642)
..+...+..++|+|||++|+....++ .+++||+... +..... .+
T Consensus 10 ~~H~~~V~~v~~s~~g~~lasgs~D~-----~v~lwd~~~~--------------~~~~~~-----------------~l 53 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLATCSSDR-----SVKIFDVRNG--------------GQILIA-----------------DL 53 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTT-----EEEEEEEETT--------------EEEEEE-----------------EE
T ss_pred ccccCeEEEeeEcCCCCEEEEEeCCC-----eEEEEEecCC--------------CcEEEE-----------------EE
Confidence 44555678899999999998865544 8999998321 110000 00
Q ss_pred cCCCceeEEeeeCCCccEEcC--CCCEEEEEecCCCceeEEEEECCCCCeeEEe----ecCCceeeeeecC--CCEEEEE
Q 039497 319 ASPVKELRMLRLNGSFPSFSP--DGGLIVFNHDFELNAGIKIAKSDGSKRWTLI----KDRTAFYNSWSPT--EKHVIYT 390 (642)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~----~~~~~~~~~~spd--g~~l~~~ 390 (642)
.+.... .....|+| +|+.|+..+. ...|.++|+.+++...+. ....+..+.|+|+ |..|+..
T Consensus 54 ~gH~~~-------V~~v~~~~~~~~~~l~s~s~---D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasg 123 (316)
T 3bg1_A 54 RGHEGP-------VWQVAWAHPMYGNILASCSY---DRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACG 123 (316)
T ss_dssp ECCSSC-------EEEEEECCGGGSSCEEEEET---TSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEE
T ss_pred cCCCcc-------EEEEEeCCCCCCCEEEEEEC---CCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEE
Confidence 000001 12447875 4787777654 356777888776432222 1456889999998 6777766
Q ss_pred EcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCC-----------------CCeEEEE
Q 039497 391 STGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD-----------------GKFLVFR 453 (642)
Q Consensus 391 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD-----------------g~~l~~~ 453 (642)
+ .++.+++|++.. .+.. .....+..+. ..+..+.|+|+ +++|+..
T Consensus 124 s-------~D~~i~lwd~~~--------~~~~--~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 185 (316)
T 3bg1_A 124 S-------SDGAISLLTYTG--------EGQW--EVKKINNAHT-IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASG 185 (316)
T ss_dssp C-------SSSCEEEEEECS--------SSCE--EECCBTTSSS-SCBCCCEECCCCCC------CCSCCCCCCCBEECC
T ss_pred c-------CCCCEEEEecCC--------CCCc--ceeeeecccc-CCcceEEEccccCCccccccccccCccccceEEEe
Confidence 5 378899999865 1100 0012222333 55677899998 3556544
Q ss_pred eCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCC----CEEEEEecCCCCCCCCceeEEEEeCCCCc-----
Q 039497 454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG----DLIAFSSNRHNPDNVEAFSLYVIKPDGSG----- 524 (642)
Q Consensus 454 ~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG----~~l~~~~~~~~~~~~~~~~l~~~d~~~~~----- 524 (642)
+ .+ ..|.+||+.++........+..+...+..++|+|++ +.|+..+.++. |.+|++....
T Consensus 186 s-~D--~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~--------v~iw~~~~~~~~~~~ 254 (316)
T 3bg1_A 186 G-CD--NLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR--------VFIWTCDDASSNTWS 254 (316)
T ss_dssp B-TT--SBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE--------EEEEECSSTTCCCCB
T ss_pred c-CC--CeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe--------EEEEEccCccccchh
Confidence 4 23 367777776442100134566666778889999997 77887777654 8999987521
Q ss_pred eEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 525 LRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 525 ~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
.+.+. .+.. .+..++|+|||+.|+..+.++
T Consensus 255 ~~~~~--~~~~-------~v~~v~~sp~g~~las~~~D~ 284 (316)
T 3bg1_A 255 PKLLH--KFND-------VVWHVSWSITANILAVSGGDN 284 (316)
T ss_dssp CCEEE--ECSS-------CEEEEEECTTTCCEEEEESSS
T ss_pred hhhhh--cCCC-------cEEEEEEcCCCCEEEEEcCCC
Confidence 12222 2233 578899999999998887765
No 174
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.47 E-value=7.3e-11 Score=126.52 Aligned_cols=362 Identities=12% Similarity=0.033 Sum_probs=197.8
Q ss_pred CceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecC-C-CcceEeeCCeEEEEEecCCCceEEEEEe
Q 039497 144 SPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCER-G-GWPTWSGDSTIYFHRQADDGWWSIFRVS 221 (642)
Q Consensus 144 ~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~wspdg~~~~~~~~~~g~~~l~~~~ 221 (642)
.+.++.|...++|+.... ...|.++|.++++........ . ..+.+||||+.+|+.+ .++ .|..+|
T Consensus 158 ~~~~~~d~~~~~~V~~~~----------~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~-~dg--~V~viD 224 (567)
T 1qks_A 158 QQMNDWDLENLFSVTLRD----------AGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIG-RDG--KVNMID 224 (567)
T ss_dssp SCCSCCCGGGEEEEEETT----------TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEE-TTS--EEEEEE
T ss_pred ccccccCCCceEEEEeCC----------CCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEc-CCC--eEEEEE
Confidence 355666655444444332 348999999998765433322 2 3569999998887773 455 688888
Q ss_pred cC--CCcccccCCccceeeCCCCCccccceee----cCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCE
Q 039497 222 FP--ENLEFLGFPIAPTRVTPPGVHCFTPAAF----HDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEF 295 (642)
Q Consensus 222 ~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~S----pdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~ 295 (642)
+. +.. ...++.. +.....+++| |||++++++....+ .+.++|..+. +.
T Consensus 225 ~~~~t~~-------~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~----~v~ViD~~t~--------------~~ 278 (567)
T 1qks_A 225 LWMKEPT-------TVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPP----QYVIMDGETL--------------EP 278 (567)
T ss_dssp TTSSSCC-------EEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETT----EEEEEETTTC--------------CE
T ss_pred CCCCCCc-------EeEEEec-CCCCceeEEccccCCCCCEEEEEEccCC----eEEEEECCCC--------------cE
Confidence 74 442 3334433 3345678899 79999888765433 5666664211 11
Q ss_pred EEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---c
Q 039497 296 IGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---D 372 (642)
Q Consensus 296 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~ 372 (642)
+......+. ..+.. .. ........+..|+++..+++.. ...+.|+++|........+.. .
T Consensus 279 ~~~i~~~~~------------~~~~~--~~-~p~~rva~i~~s~~~~~~vv~~--~~~g~v~~vd~~~~~~~~v~~i~~~ 341 (567)
T 1qks_A 279 KKIQSTRGM------------TYDEQ--EY-HPEPRVAAILASHYRPEFIVNV--KETGKILLVDYTDLNNLKTTEISAE 341 (567)
T ss_dssp EEEEECCEE------------CTTTC--CE-ESCCCEEEEEECSSSSEEEEEE--TTTTEEEEEETTCSSEEEEEEEECC
T ss_pred EEEEecccc------------ccccc--cc-cCCCceEEEEEcCCCCEEEEEe--cCCCeEEEEecCCCccceeeeeecc
Confidence 111110000 00000 00 0000001235678877666654 335789999987654333322 4
Q ss_pred CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc-cCC-CCccCcE-ECCCCCe
Q 039497 373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK-EET-GNNAFPS-CSPDGKF 449 (642)
Q Consensus 373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~-~~~~~~~-~SpDg~~ 449 (642)
.......|+|||++++.+.. ..+.+.++++.. ++ ....+.. ... ..-..+. ++|++..
T Consensus 342 ~~~~d~~~~pdgr~~~va~~------~sn~V~ViD~~t---------~k----l~~~i~vgg~~Phpg~g~~~~~p~~g~ 402 (567)
T 1qks_A 342 RFLHDGGLDGSHRYFITAAN------ARNKLVVIDTKE---------GK----LVAIEDTGGQTPHPGRGANFVHPTFGP 402 (567)
T ss_dssp SSEEEEEECTTSCEEEEEEG------GGTEEEEEETTT---------TE----EEEEEECSSSSBCCTTCEEEEETTTEE
T ss_pred ccccCceECCCCCEEEEEeC------CCCeEEEEECCC---------Cc----EEEEEeccCcCCCCccceeeECCCCCc
Confidence 45667899999999988874 256666655432 21 1222222 110 0111233 5888888
Q ss_pred EEEEeCCCCceeEEEEECCCCccc----cceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC--
Q 039497 450 LVFRSGRSGHKNLFVLDAVNGEFN----GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS-- 523 (642)
Q Consensus 450 l~~~~~~~g~~~l~~~d~~~g~~~----~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~-- 523 (642)
+++++.- +...|.+++.++++.+ +.++.+.........+..+|||++|+.....+. +......|.++|+++.
T Consensus 403 v~~t~~~-g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~-~~~~~~~v~v~d~~~~~~ 480 (567)
T 1qks_A 403 VWATSHM-GDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNP-EAEISGSVAVFDIKAMTG 480 (567)
T ss_dssp EEEEEBS-SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCS-SHHHHTCEEEEEGGGCCC
T ss_pred EEEeCCC-CCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCC-CcccCceEEEEECCcccc
Confidence 7766542 3347889998873310 113444433222234678999999887763221 0001346999998765
Q ss_pred ---ce--EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeec
Q 039497 524 ---GL--RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL 595 (642)
Q Consensus 524 ---~~--~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 595 (642)
.. +.+....+.+. ......+.++.|++||++|+++...+.. ....|.++|..+.+++..
T Consensus 481 ~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~~~s~~~~~~------------~~~~i~v~D~~t~~~~~~ 544 (567)
T 1qks_A 481 DGSDPEFKTLPIAEWAGI-TEGQPRVVQGEFNKDGTEVWFSVWNGKD------------QESALVVVDDKTLELKHV 544 (567)
T ss_dssp SSSCCCEEEECHHHHHTC-CSSCCEEEEEEECTTSSEEEEEEECCTT------------SCCEEEEEETTTTEEEEE
T ss_pred cccCCCcEEecccccccc-CCCCcceEeeeECCCCCEEEEEeecCCC------------CCCcEEEEECCCceEEEE
Confidence 21 33321100000 0001256789999999999988432110 123899999888775543
No 175
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.46 E-value=9.4e-12 Score=125.38 Aligned_cols=231 Identities=16% Similarity=0.123 Sum_probs=153.3
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCe--eEE---ee-cCCceeeeeec--CCCEEEEEEcCCCcccCCCeEEE
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR--WTL---IK-DRTAFYNSWSP--TEKHVIYTSTGPIFQSERATVQI 405 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~--~~l---~~-~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~l 405 (642)
.+.|+|+|++|+.... ...|.++++..+.. ..+ .. ...+..+.|+| |++.|+..+. ++.+++
T Consensus 16 ~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~-------dg~v~v 85 (351)
T 3f3f_A 16 DVVYDFYGRHVATCSS---DQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASY-------DKTVKL 85 (351)
T ss_dssp EEEECSSSSEEEEEET---TSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEET-------TSCEEE
T ss_pred EEEEcCCCCEEEEeeC---CCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcC-------CCeEEE
Confidence 5689999998887654 35677777765432 121 11 56788999999 6898888774 788999
Q ss_pred EEEEeecCCCCCCCCCcc----ccceEEccccCCCCccCcEECCC--CCeEEEEeCCCCceeEEEEECCCCccccceeeC
Q 039497 406 ARVSFQLDPSDDNNREEI----PCDVKILTKEETGNNAFPSCSPD--GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL 479 (642)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~SpD--g~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l 479 (642)
|++.. . .... ......+..+. ..+..+.|+|+ +++|+..+. ...|.+||+.+++. +..+
T Consensus 86 wd~~~--~------~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~---dg~v~iwd~~~~~~---~~~~ 150 (351)
T 3f3f_A 86 WEEDP--D------QEECSGRRWNKLCTLNDSK-GSLYSVKFAPAHLGLKLACLGN---DGILRLYDALEPSD---LRSW 150 (351)
T ss_dssp EEECT--T------SCTTSSCSEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEET---TCEEEEEECSSTTC---TTCC
T ss_pred EecCC--C------cccccccCcceeeeecccC-CceeEEEEcCCCCCcEEEEecC---CCcEEEecCCChHH---hccc
Confidence 99965 1 1000 00244444454 67888999999 998888774 34899999987764 1211
Q ss_pred C-------------CCCCcccceeEecC---CCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee-cCCCCCCCcccc
Q 039497 480 T-------------DGPWIDTMPSWSPK---GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV-AGPEGSGDVDRE 542 (642)
Q Consensus 480 ~-------------~~~~~~~~~~~spd---G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~ 542 (642)
. .....+..+.|+|+ ++.|+..+.++. +..++...++...+.. ..+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~h~~------- 215 (351)
T 3f3f_A 151 TLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA--------IIYQRGKDGKLHVAAKLPGHKS------- 215 (351)
T ss_dssp EEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE--------EEEEECTTSCEEEEEECCCCCS-------
T ss_pred cccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCc--------EEEEccCCCceeeeeecCCCCc-------
Confidence 1 23345667899997 888888876653 5556666665544433 23333
Q ss_pred cccceEEcCCC----CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC----------------------------
Q 039497 543 RINHVCFSADG----EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS---------------------------- 590 (642)
Q Consensus 543 ~~~~~~~S~Dg----~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------------------- 590 (642)
.+..+.|+|++ +.|+..+.++ .|.+|++..+
T Consensus 216 ~i~~~~~~p~~~~~~~~l~s~~~dg-----------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (351)
T 3f3f_A 216 LIRSISWAPSIGRWYQLIATGCKDG-----------------RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQG 278 (351)
T ss_dssp CEEEEEECCCSSCSSEEEEEEETTS-----------------CEEEEEEEECC---------------------------
T ss_pred ceeEEEECCCCCCcceEEEEEcCCC-----------------eEEEEeCCCCcCccccCCcccceeccCCCccccccccc
Confidence 67889999998 6666665544 5666666542
Q ss_pred -------------------ceeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497 591 -------------------GLRRLTWNGYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 591 -------------------~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
.+..+..+...+..++|+|++++|++....+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg 328 (351)
T 3f3f_A 279 RSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDG 328 (351)
T ss_dssp ------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTS
T ss_pred ccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCC
Confidence 2333444556678899999999998876544
No 176
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.46 E-value=5.5e-11 Score=120.26 Aligned_cols=177 Identities=11% Similarity=0.085 Sum_probs=119.0
Q ss_pred ccEEcC--CCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEE
Q 039497 334 FPSFSP--DGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARV 408 (642)
Q Consensus 334 ~~~~sp--dg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~ 408 (642)
...|+| +++.++..+. ...|.++|+.+++...+.. ...+..+.|+|||+.|+..+. ++.+++|++
T Consensus 130 ~~~~~~~~~~~~l~s~s~---dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~-------dg~i~iwd~ 199 (343)
T 3lrv_A 130 YMYGHNEVNTEYFIWADN---RGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSP-------DGILDVYNL 199 (343)
T ss_dssp EEECCC---CCEEEEEET---TCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECT-------TSCEEEEES
T ss_pred EEEcCCCCCCCEEEEEeC---CCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcC-------CCEEEEEEC
Confidence 457899 9998887654 3678889998887655443 345788999999998887653 789999998
Q ss_pred EeecCCCCCCCCCccccce-EEccc-cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC---CC
Q 039497 409 SFQLDPSDDNNREEIPCDV-KILTK-EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD---GP 483 (642)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~-~~l~~-~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~---~~ 483 (642)
.. +. .. ..+.. +. ..+..+.|+|||++|+..+. + .|.+||+.+++. +..+.. +.
T Consensus 200 ~~--------~~-----~~~~~~~~~h~-~~v~~l~fs~~g~~l~s~~~--~--~v~iwd~~~~~~---~~~~~~~~~~~ 258 (343)
T 3lrv_A 200 SS--------PD-----QASSRFPVDEE-AKIKEVKFADNGYWMVVECD--Q--TVVCFDLRKDVG---TLAYPTYTIPE 258 (343)
T ss_dssp SC--------TT-----SCCEECCCCTT-SCEEEEEECTTSSEEEEEES--S--BEEEEETTSSTT---CBSSCCCBC--
T ss_pred CC--------CC-----CCccEEeccCC-CCEEEEEEeCCCCEEEEEeC--C--eEEEEEcCCCCc---ceeeccccccc
Confidence 65 22 23 45555 44 67888999999999988873 2 799999988764 333332 21
Q ss_pred Cccc--ceeEecCCCEEEEEec-CCCCCCCCceeEEEEeCCCCc--eEEeeecCCCCCCCcccccccceEEcC---CCCE
Q 039497 484 WIDT--MPSWSPKGDLIAFSSN-RHNPDNVEAFSLYVIKPDGSG--LRRIHVAGPEGSGDVDRERINHVCFSA---DGEW 555 (642)
Q Consensus 484 ~~~~--~~~~spdG~~l~~~~~-~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~S~---Dg~~ 555 (642)
.... .++|+|+|++|+..+. ++ .|.+|+++.+. ... . .+..+.|++ +++.
T Consensus 259 ~~~~~~~~~~~~~g~~l~~~s~~d~--------~i~v~~~~~~~~~~~~-------~-------~~~~~~~~~~~~~~~~ 316 (343)
T 3lrv_A 259 FKTGTVTYDIDDSGKNMIAYSNESN--------SLTIYKFDKKTKNWTK-------D-------EESALCLQSDTADFTD 316 (343)
T ss_dssp ---CCEEEEECTTSSEEEEEETTTT--------EEEEEEECTTTCSEEE-------E-------EEEECCC----CCCCE
T ss_pred ccccceEEEECCCCCEEEEecCCCC--------cEEEEEEcccccceEe-------c-------CceeEecCccccccce
Confidence 2222 4899999999998776 33 26777664432 222 0 233456666 7777
Q ss_pred EEEEEecC
Q 039497 556 LLFTANLG 563 (642)
Q Consensus 556 l~~~~~~~ 563 (642)
|++.+.++
T Consensus 317 l~~~~~d~ 324 (343)
T 3lrv_A 317 MDVVCGDG 324 (343)
T ss_dssp EEEEEETT
T ss_pred eEEEecCC
Confidence 77777654
No 177
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.45 E-value=3e-12 Score=127.97 Aligned_cols=231 Identities=11% Similarity=0.044 Sum_probs=147.7
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEE---ee-cCCceeeeeec--CCCEEEEEEcCCCcccCCCeEEEEE
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTL---IK-DRTAFYNSWSP--TEKHVIYTSTGPIFQSERATVQIAR 407 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l---~~-~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~l~~ 407 (642)
..+|+|||++|+..+. ...|.++|+.++....+ .. ...+..+.|+| +++.|+..+. ++.+++|+
T Consensus 18 ~v~~s~~g~~lasgs~---D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~-------D~~v~iWd 87 (316)
T 3bg1_A 18 DAQMDYYGTRLATCSS---DRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSY-------DRKVIIWR 87 (316)
T ss_dssp EEEECGGGCEEEEEET---TTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEET-------TSCEEEEC
T ss_pred EeeEcCCCCEEEEEeC---CCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEEC-------CCEEEEEE
Confidence 4589999999888664 35677777766543222 21 56788999986 4888887764 78999999
Q ss_pred EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCC--CCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCc
Q 039497 408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD--GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWI 485 (642)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD--g~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~ 485 (642)
+.. +..+ ....+..+. ..+..+.|+|+ |+.|+..+. + ..|.+|++.++........+..+...
T Consensus 88 ~~~--------~~~~---~~~~~~~h~-~~V~~v~~~p~~~g~~lasgs~-D--~~i~lwd~~~~~~~~~~~~~~~h~~~ 152 (316)
T 3bg1_A 88 EEN--------GTWE---KSHEHAGHD-SSVNSVCWAPHDYGLILACGSS-D--GAISLLTYTGEGQWEVKKINNAHTIG 152 (316)
T ss_dssp CSS--------SCCC---EEEEECCCS-SCCCEEEECCTTTCSCEEEECS-S--SCEEEEEECSSSCEEECCBTTSSSSC
T ss_pred CCC--------Ccce---EEEEccCCC-CceEEEEECCCCCCcEEEEEcC-C--CCEEEEecCCCCCcceeeeeccccCC
Confidence 854 1111 233444444 67788999998 777776653 2 36888888765310001223344455
Q ss_pred ccceeEecC-----------------CCEEEEEecCCCCCCCCceeEEEEeCCCCc-eEEee-ecCCCCCCCcccccccc
Q 039497 486 DTMPSWSPK-----------------GDLIAFSSNRHNPDNVEAFSLYVIKPDGSG-LRRIH-VAGPEGSGDVDRERINH 546 (642)
Q Consensus 486 ~~~~~~spd-----------------G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~~~~~~~~ 546 (642)
+..+.|+|+ +++|+..+.++. |.+||+..+. .+.+. ..++.. .+..
T Consensus 153 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~--------v~lWd~~~~~~~~~~~~l~~h~~-------~V~~ 217 (316)
T 3bg1_A 153 CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNL--------IKLWKEEEDGQWKEEQKLEAHSD-------WVRD 217 (316)
T ss_dssp BCCCEECCCCCC------CCSCCCCCCCBEECCBTTSB--------CCEEEECTTSCEEEEECCBCCSS-------CEEE
T ss_pred cceEEEccccCCccccccccccCccccceEEEecCCCe--------EEEEEeCCCCccceeeecccCCC-------ceEE
Confidence 677899998 356665555543 7888886542 22222 223444 6788
Q ss_pred eEEcCCC----CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC-----ceeeccCCCCCCCCcEEecCCceEEee
Q 039497 547 VCFSADG----EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS-----GLRRLTWNGYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 547 ~~~S~Dg----~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~lt~~~~~~~~~~~s~dg~~~~~~ 617 (642)
++|+|++ +.|+..+.++ .|.+|++... ....+..+...+..++|+|+|++|++.
T Consensus 218 v~~sp~~~~~~~~las~s~D~-----------------~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~ 280 (316)
T 3bg1_A 218 VAWAPSIGLPTSTIASCSQDG-----------------RVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVS 280 (316)
T ss_dssp EECCCCSSCSCCEEEEEETTC-----------------EEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEE
T ss_pred EEecCCCCCCCceEEEEcCCC-----------------eEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEE
Confidence 9999997 6677666554 6777777652 123344445667899999999998876
Q ss_pred cCCC
Q 039497 618 LRLE 621 (642)
Q Consensus 618 ~~~~ 621 (642)
...+
T Consensus 281 ~~D~ 284 (316)
T 3bg1_A 281 GGDN 284 (316)
T ss_dssp ESSS
T ss_pred cCCC
Confidence 5433
No 178
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.44 E-value=4.7e-08 Score=106.08 Aligned_cols=479 Identities=10% Similarity=0.062 Sum_probs=264.5
Q ss_pred CcceEEEEeecCCceeeeEEEecCCCCCCCCCceeeec--CCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCc
Q 039497 3 PKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLT--DGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSK 80 (642)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt--~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~ 80 (642)
|...|+|+ ...+|.++++.+ .....+. ..-.......|. +++.+|+|+.. ....|+.+...|..
T Consensus 5 p~~~Ll~s------~~~~I~~i~l~~-----~~~~~~~~~~~~~~~~~l~~d-~~~~~lywtD~--~~~~I~r~~~~g~~ 70 (628)
T 4a0p_A 5 PEAFLLFS------RRADIRRISLET-----NNNNVAIPLTGVKEASALDFD-VTDNRIYWTDI--SLKTISRAFMNGSA 70 (628)
T ss_dssp CCCEEEEE------ETTEEEEEESSC-----TTCEEECCCCSCSCEEEEEEE-TTTTEEEEEET--TTTEEEEEETTSCS
T ss_pred CCcEEEEE------eCCcEEEEECCC-----CCcceEEEcCCCCceEEEEEE-CCCCEEEEEEC--CCCeEEEEECCCCC
Confidence 45678888 667999999987 4332221 122334556688 98888887754 34567877666642
Q ss_pred ccccCCCCCCcccccccc--CCCEEEEEEeccCCCcccccccceEEEEccCCceEeccc-CCCccCCceeCCCCcEEEEE
Q 039497 81 TELLPSIPCSLFHDRPVA--RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTP-YGVVDYSPSVSYSGKFIAVA 157 (642)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~-~~~~~~~~~~SPDG~~la~~ 157 (642)
.+.+.. .........++ .++.|+++.... ..|++.++++...+.|.. ........++.|...+|.|+
T Consensus 71 ~~~v~~-~g~~~P~GlAvD~~~~~LY~tD~~~---------~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~t 140 (628)
T 4a0p_A 71 LEHVVE-FGLDYPEGMAVDWLGKNLYWADTGT---------NRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWT 140 (628)
T ss_dssp CEEEEC-SSCSCCCEEEEETTTTEEEEEETTT---------TEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEE
T ss_pred cEEEEe-CCCCCcceEEEEeCCCEEEEEECCC---------CEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEe
Confidence 222111 01111112333 578888876532 269999998877666553 33334567899987888877
Q ss_pred ecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCCcc---eEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCcc
Q 039497 158 SYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWP---TWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIA 234 (642)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~---~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~ 234 (642)
.... ...|+..++++...+.+.. ...+| ++.+++..+|..... ...|+++++++. .
T Consensus 141 D~g~----------~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~~--~~~I~~~d~dG~--------~ 199 (628)
T 4a0p_A 141 EWGG----------KPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLD--TNLIESSNMLGL--------N 199 (628)
T ss_dssp ECSS----------SCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEETT--TTEEEEEETTSC--------S
T ss_pred CCCC----------CCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEECC--CCEEEEEcCCCC--------c
Confidence 5332 3478899988877666653 33344 788876444444233 348999998876 3
Q ss_pred ceeeCCCCCccccceeecCCcEEEEEEeccC----------Cc----------eeeEEEEEeec---CCCCc-----c--
Q 039497 235 PTRVTPPGVHCFTPAAFHDGKRLAVATRRKN----------RN----------FRHIEIYDLTL---NPNFH-----H-- 284 (642)
Q Consensus 235 ~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~----------~~----------~~~i~~~d~~~---~~~~~-----~-- 284 (642)
.+.+.........+++ ++.+|+++....+ .. ...|.++.... ...+. -
T Consensus 200 ~~v~~~~l~~P~glav--~~~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~ 277 (628)
T 4a0p_A 200 REVIADDLPHPFGLTQ--YQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSH 277 (628)
T ss_dssp CEEEEECCSCEEEEEE--ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSS
T ss_pred eEEeeccCCCceEEEE--ECCEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcch
Confidence 3333222112223343 3456776643211 10 11222222200 00000 0
Q ss_pred ---------------cCCeecCCCC-------EEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeC----CCccEEc
Q 039497 285 ---------------YNPFVSANSE-------FIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLN----GSFPSFS 338 (642)
Q Consensus 285 ---------------~~~~~spDg~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~s 338 (642)
....+.+|++ .|+|... . .+....++.....-...... ...+.|.
T Consensus 278 ~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~-~--------~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d 348 (628)
T 4a0p_A 278 LCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQK-S--------AINRMVIDEQQSPDIILPIHSLRNVRAIDYD 348 (628)
T ss_dssp EEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEET-T--------EEEEECCCTTCCCCEECCCTTCSCEEEEEEE
T ss_pred hhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeecc-c--------eEEEEecccccCceEEEEehhcCCceEEEEe
Confidence 0112233332 2222210 0 00001111110000011111 1245677
Q ss_pred CCCCEEEEEecCCCceeEEEEECCCCCeeEEeec--------CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 339 PDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD--------RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 339 pdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~--------~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
+.+++|++... ....|+++++++.....+... .....+++...++.||++.. ....+. .++.
T Consensus 349 ~~~~~iy~sD~--~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~------~~~~I~--v~~~ 418 (628)
T 4a0p_A 349 PLDKQLYWIDS--RQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCE------ATNVIN--VTRL 418 (628)
T ss_dssp TTTTEEEEEET--TTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEET------TTTEEE--EEET
T ss_pred cCCCeEEEEec--CcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcC------CCCEEE--EEEC
Confidence 77777877653 356799999888765544432 24667889999999998873 244444 4444
Q ss_pred ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccce
Q 039497 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMP 489 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~ 489 (642)
+ |. ..+.+..........+++.|...+|+++........|++.++++.. .+.|.. .-.....+
T Consensus 419 --~------G~----~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~----~~~l~~~~l~~P~gl 482 (628)
T 4a0p_A 419 --D------GR----SVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTE----REVLFFSGLSKPIAL 482 (628)
T ss_dssp --T------SC----EEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCS----CEEEECSSCSCEEEE
T ss_pred --C------CC----eEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCC----cEEEEeccCCCccEE
Confidence 3 21 2333332222456778999966788887643222389999998444 244433 22344677
Q ss_pred eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCC
Q 039497 490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEP 569 (642)
Q Consensus 490 ~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~ 569 (642)
++++++++||+...... .|+.+++++...+.+...... .+..++. ++..||++....
T Consensus 483 a~D~~~~~LYw~D~~~~-------~I~~~~~dG~~r~~~~~~~~~--------~P~glav--~~~~ly~tD~~~------ 539 (628)
T 4a0p_A 483 ALDSRLGKLFWADSDLR-------RIESSDLSGANRIVLEDSNIL--------QPVGLTV--FENWLYWIDKQQ------ 539 (628)
T ss_dssp EEETTTTEEEEEETTTT-------EEEEEETTSCSCEEEECSSCS--------CEEEEEE--ETTEEEEEETTT------
T ss_pred EEeCCCCEEEEEeCCCC-------EEEEEeCCCCceEEEEcCCCC--------CcEEEEE--ECCEEEEEECCC------
Confidence 99999999999876543 499999998877766542222 2334444 556888887543
Q ss_pred CCCCCCCCCCCcEEEEEcCCCc-eeecc
Q 039497 570 VSWPNQFQPYGDLYVVKLDGSG-LRRLT 596 (642)
Q Consensus 570 ~~~~~~~~~~~~l~~~~~~~~~-~~~lt 596 (642)
..|++++..+++ .+.|.
T Consensus 540 ----------~~i~~~~k~~G~~~~~i~ 557 (628)
T 4a0p_A 540 ----------QMIEKIDMTGREGRTKVQ 557 (628)
T ss_dssp ----------TEEEEEETTSSSCCEEEE
T ss_pred ----------CeEEEEECcCCCCcEEEe
Confidence 389999987443 44444
No 179
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.44 E-value=9e-12 Score=139.94 Aligned_cols=228 Identities=11% Similarity=0.080 Sum_probs=156.7
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecC--CCEEEEEEcCCCcccCCCeEEEEE
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPT--EKHVIYTSTGPIFQSERATVQIAR 407 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~l~~ 407 (642)
.+.|+|+|++|+.... ...|.++++.++....+.. ...+..+.|+|+ ++.|+.++. ++.+++|+
T Consensus 14 ~l~~s~dg~~latg~~---dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~-------Dg~I~vwd 83 (753)
T 3jro_A 14 DAVLDYYGKRLATCSS---DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY-------DGKVLIWK 83 (753)
T ss_dssp EECCCSSSCCEEEEET---TTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEET-------TSCEEEEE
T ss_pred EEEECCCCCeEEEEEC---CCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeC-------CCeEEEEE
Confidence 4578999998887654 3567777766443333322 556889999998 888888874 78999999
Q ss_pred EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCC--CCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCc
Q 039497 408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD--GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWI 485 (642)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD--g~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~ 485 (642)
+.. +... ....+..+. ..+..+.|+|+ |+.|+..+. ...|.+||+.++.. .....+..+...
T Consensus 84 ~~~--------~~~~---~~~~~~~h~-~~V~~v~~sp~~~~~~l~sgs~---dg~I~vwdl~~~~~-~~~~~~~~~~~~ 147 (753)
T 3jro_A 84 EEN--------GRWS---QIAVHAVHS-ASVNSVQWAPHEYGPLLLVASS---DGKVSVVEFKENGT-TSPIIIDAHAIG 147 (753)
T ss_dssp EET--------TEEE---EEEEECCCS-SCEEEEEECCGGGCSEEEEEET---TSEEEEEECCSSSC-CCCEEEECCSSC
T ss_pred CCC--------Cccc---ccccccCCC-CCeEEEEECCCCCCCEEEEEeC---CCcEEEEEeecCCC-cceeEeecCCCc
Confidence 976 1100 223334444 67888999999 888888773 34899999987632 112344556667
Q ss_pred ccceeEec-------------CCCEEEEEecCCCCCCCCceeEEEEeCCCCceE--Ee-eecCCCCCCCcccccccceEE
Q 039497 486 DTMPSWSP-------------KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR--RI-HVAGPEGSGDVDRERINHVCF 549 (642)
Q Consensus 486 ~~~~~~sp-------------dG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~l-~~~~~~~~~~~~~~~~~~~~~ 549 (642)
+..+.|+| |++.|+..+.++. |++||+.++... .+ +...+.. .+..+.|
T Consensus 148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~--------I~iwd~~~~~~~~~~~~~~~~h~~-------~V~~l~~ 212 (753)
T 3jro_A 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNL--------VKIWKYNSDAQTYVLESTLEGHSD-------WVRDVAW 212 (753)
T ss_dssp EEEEEECCCC---------CGGGCCEEEEETTSC--------EEEEEEETTTTEEEEEEEECCCSS-------CEEEEEE
T ss_pred eEEEEecCcccccccccccCCCCCEEEEEECCCe--------EEEEeccCCcccceeeeeecCCCC-------cEEEEEe
Confidence 78889999 5888888887765 899998766421 11 1223344 6788999
Q ss_pred cCC---CCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc------eeeccCCCCCCCCcEEecCCceEEeecC
Q 039497 550 SAD---GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG------LRRLTWNGYENGTPAWHPGNQLDLGKLR 619 (642)
Q Consensus 550 S~D---g~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~lt~~~~~~~~~~~s~dg~~~~~~~~ 619 (642)
+|+ |+.|+..+.++ .|.+|++..+. ......+...+..++|+|+|+++++...
T Consensus 213 sp~~~~~~~l~s~s~Dg-----------------~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~ 274 (753)
T 3jro_A 213 SPTVLLRSYLASVSQDR-----------------TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 274 (753)
T ss_dssp CCCCSSSEEEEEEESSS-----------------CEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS
T ss_pred ccCCCCCCEEEEEecCC-----------------EEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcC
Confidence 999 78777776654 67788877653 1222224456788999999999887644
No 180
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.43 E-value=2.7e-11 Score=122.55 Aligned_cols=179 Identities=11% Similarity=0.055 Sum_probs=118.0
Q ss_pred EcCCCCEEEEEecCCCceeEEEEECCCCCee-EEee--cCCceeeeeec--CCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRW-TLIK--DRTAFYNSWSP--TEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 337 ~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~-~l~~--~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
-+.|+...++.. ...+.+++...++.. .... ...+..+.|+| +++.|+..+. ++.+++|++..
T Consensus 91 ~s~D~~i~~w~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~-------dg~i~~wd~~~- 158 (343)
T 3lrv_A 91 RGPCNRLLLLYP----GNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADN-------RGTIGFQSYED- 158 (343)
T ss_dssp ECSTTEEEEEET----TTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEET-------TCCEEEEESSS-
T ss_pred ecCCCeEEEEEc----cCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeC-------CCcEEEEECCC-
Confidence 345554444422 245666777776633 2222 35688999999 9999888774 78999999865
Q ss_pred cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccce-eeCCC-CCCcccce
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI-RQLTD-GPWIDTMP 489 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~-~~l~~-~~~~~~~~ 489 (642)
+. ............+..++|+|||+.|+..+. +..|.+||+.+++. + ..+.. +...+..+
T Consensus 159 -------~~-----~~~~~~~~~~~~i~~~~~~pdg~~lasg~~---dg~i~iwd~~~~~~---~~~~~~~~h~~~v~~l 220 (343)
T 3lrv_A 159 -------DS-----QYIVHSAKSDVEYSSGVLHKDSLLLALYSP---DGILDVYNLSSPDQ---ASSRFPVDEEAKIKEV 220 (343)
T ss_dssp -------SC-----EEEEECCCSSCCCCEEEECTTSCEEEEECT---TSCEEEEESSCTTS---CCEECCCCTTSCEEEE
T ss_pred -------Cc-----EEEEEecCCCCceEEEEECCCCCEEEEEcC---CCEEEEEECCCCCC---CccEEeccCCCCEEEE
Confidence 22 222222222235778899999998887653 34899999998885 4 45665 66778899
Q ss_pred eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec--CCCCCCCccccccc--ceEEcCCCCEEEEEEe
Q 039497 490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA--GPEGSGDVDRERIN--HVCFSADGEWLLFTAN 561 (642)
Q Consensus 490 ~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~--~~~~~~~~~~~~~~--~~~~S~Dg~~l~~~~~ 561 (642)
+|+|+|++|+..+.+ . |.+||+..++....... .... .+. .+.|+|+|++|+..+.
T Consensus 221 ~fs~~g~~l~s~~~~-~--------v~iwd~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~l~~~s~ 280 (343)
T 3lrv_A 221 KFADNGYWMVVECDQ-T--------VVCFDLRKDVGTLAYPTYTIPEF-------KTGTVTYDIDDSGKNMIAYSN 280 (343)
T ss_dssp EECTTSSEEEEEESS-B--------EEEEETTSSTTCBSSCCCBC------------CCEEEEECTTSSEEEEEET
T ss_pred EEeCCCCEEEEEeCC-e--------EEEEEcCCCCcceeecccccccc-------cccceEEEECCCCCEEEEecC
Confidence 999999999888844 2 99999987654321110 0011 122 4999999999988776
No 181
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.43 E-value=2.1e-10 Score=115.38 Aligned_cols=314 Identities=13% Similarity=0.099 Sum_probs=172.4
Q ss_pred eEeeCCeEEEEEecC--CCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEec-----cCCcee
Q 039497 197 TWSGDSTIYFHRQAD--DGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRR-----KNRNFR 269 (642)
Q Consensus 197 ~wspdg~~~~~~~~~--~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~-----~~~~~~ 269 (642)
...||++.+|+.+.. ...-.|+.+|..+.+ ....+.. +... .+++||||++|+++... .+....
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~-------v~~~I~v-G~~P-~va~spDG~~lyVan~~~~r~~~G~~~~ 109 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGR-------VIGMIDG-GFLP-NPVVADDGSFIAHASTVFSRIARGERTD 109 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTE-------EEEEEEE-CSSC-EEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCe-------EEEEEEC-CCCC-cEEECCCCCEEEEEcccccccccCCCCC
Confidence 446899777776432 112489999998873 2333432 3223 38999999999886531 111233
Q ss_pred eEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEec
Q 039497 270 HIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHD 349 (642)
Q Consensus 270 ~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 349 (642)
.+.++|..+.. .+.-. .+... ... ........+.++|||++++....
T Consensus 110 ~VsviD~~t~~--------------v~~~I-----------------~v~~g-~r~-~~g~~P~~~a~spDGk~lyVan~ 156 (386)
T 3sjl_D 110 YVEVFDPVTLL--------------PTADI-----------------ELPDA-PRF-LVGTYPWMTSLTPDGKTLLFYQF 156 (386)
T ss_dssp EEEEECTTTCC--------------EEEEE-----------------EETTC-CCC-CBSCCGGGEEECTTSSEEEEEEC
T ss_pred EEEEEECCCCe--------------EEEEE-----------------ECCCc-ccc-ccCCCCceEEEcCCCCEEEEEEc
Confidence 57777762211 01100 00000 000 00011235689999998777542
Q ss_pred CCCceeEEEEECCCCCeeEEee-cC--------CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCC
Q 039497 350 FELNAGIKIAKSDGSKRWTLIK-DR--------TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR 420 (642)
Q Consensus 350 ~~~~~~l~~~d~~~~~~~~l~~-~~--------~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 420 (642)
.....|.++|+.+.+...... .+ .-..+..++||+.+++... ..+.+ + . .
T Consensus 157 -~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~------~~g~v-~-~--~---------- 215 (386)
T 3sjl_D 157 -SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFG------TEGTP-E-I--T---------- 215 (386)
T ss_dssp -SSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECC------SSSCC-E-E--E----------
T ss_pred -CCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECC------CCCeE-E-E--e----------
Confidence 234789999999987654433 11 1111355666665444431 11222 1 1 1
Q ss_pred CccccceEEccccCCCCccCcEEC-CCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC-------------CCcc
Q 039497 421 EEIPCDVKILTKEETGNNAFPSCS-PDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG-------------PWID 486 (642)
Q Consensus 421 ~~~~~~~~~l~~~~~~~~~~~~~S-pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~-------------~~~~ 486 (642)
....+.........++.|. +||+ ++|.+.. .++|.+|..++.. +.+... +...
T Consensus 216 -----~~~~~~~~~~~~~~~~~~~~~dG~-~~~vs~~---g~V~v~d~~~~~~----~v~~~~~~~~~~~~~~g~~p~g~ 282 (386)
T 3sjl_D 216 -----HTEVFHPEDEFLINHPAYSQKAGR-LVWPTYT---GKIHQIDLSSGDA----KFLPAVEALTEAERADGWRPGGW 282 (386)
T ss_dssp -----ECCCCSCTTSCBCSCCEEETTTTE-EEEEBTT---SEEEEEECTTSSC----EECCCEESSCHHHHHTTEEECSS
T ss_pred -----ecceeccccccccccceeEcCCCc-EEEEeCC---CEEEEEECCCCcc----eeecceeccccccccccccCCCc
Confidence 0011111110122235664 7885 5566642 3799999986542 222111 1122
Q ss_pred cceeEecCCCEEEEEecCCCCC--CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497 487 TMPSWSPKGDLIAFSSNRHNPD--NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA 564 (642)
Q Consensus 487 ~~~~~spdG~~l~~~~~~~~~~--~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~ 564 (642)
....++|++++||......... .....+|+++|+++++...-...+. .+..+.+|+||+.++|+.+...
T Consensus 283 q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~---------~~~~lavs~D~~~~ly~tn~~~ 353 (386)
T 3sjl_D 283 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH---------EIDSINVSQDEKPLLYALSTGD 353 (386)
T ss_dssp SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE---------EECEEEECSSSSCEEEEEETTT
T ss_pred ceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC---------CcceEEECCCCCeEEEEEcCCC
Confidence 3468899999999875422100 1134789999999887654333221 3568999999985556655432
Q ss_pred cccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecC
Q 039497 565 VMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPG 610 (642)
Q Consensus 565 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~d 610 (642)
..|.++|..++++..-....+....+.+++|
T Consensus 354 ---------------~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 354 ---------------KTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp ---------------TEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred ---------------CeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 2899999988775544444455567788887
No 182
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.42 E-value=1.2e-11 Score=139.02 Aligned_cols=243 Identities=12% Similarity=0.110 Sum_probs=157.3
Q ss_pred eCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEee
Q 039497 238 VTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEP 317 (642)
Q Consensus 238 l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~ 317 (642)
+..+...+..++|+|||++|+....++ .|.+||+.... ++. ...
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg-----~I~vwd~~~~~------------~~~-------------------~~~ 48 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDK-----TIKIFEVEGET------------HKL-------------------IDT 48 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTT-----EEEEEEEETTE------------EEE-------------------EEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCC-----cEEEEecCCCC------------Ccc-------------------cee
Confidence 344555678889999999888865443 78888873110 000 000
Q ss_pred ccCCCceeEEeeeCCCccEEcCC--CCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecC--CCEEEE
Q 039497 318 VASPVKELRMLRLNGSFPSFSPD--GGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPT--EKHVIY 389 (642)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~spd--g~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spd--g~~l~~ 389 (642)
+.+... ....+.|+|+ |+.|+..+. ...|.++++.+++...+.. ...+..+.|+|+ ++.++.
T Consensus 49 l~~h~~-------~V~~l~~s~~~~~~~l~s~s~---Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~s 118 (753)
T 3jro_A 49 LTGHEG-------PVWRVDWAHPKFGTILASCSY---DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV 118 (753)
T ss_dssp ECCCSS-------CEEEEEECCTTSCSEEEEEET---TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred ccCCcC-------ceEEEEecCCCCCCEEEEEeC---CCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEE
Confidence 000001 1124588888 888887664 3567777877775333222 567889999999 898888
Q ss_pred EEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECC-------------CCCeEEEEeCC
Q 039497 390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSP-------------DGKFLVFRSGR 456 (642)
Q Consensus 390 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-------------Dg~~l~~~~~~ 456 (642)
++. ++.+++|++.. .... ....+..+. ..+..+.|+| |++.|+..+.+
T Consensus 119 gs~-------dg~I~vwdl~~--------~~~~---~~~~~~~~~-~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d 179 (753)
T 3jro_A 119 ASS-------DGKVSVVEFKE--------NGTT---SPIIIDAHA-IGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD 179 (753)
T ss_dssp EET-------TSEEEEEECCS--------SSCC---CCEEEECCS-SCEEEEEECCCC---------CGGGCCEEEEETT
T ss_pred EeC-------CCcEEEEEeec--------CCCc---ceeEeecCC-CceEEEEecCcccccccccccCCCCCEEEEEECC
Confidence 874 78999999865 2111 233344444 6778899999 68888877743
Q ss_pred CCceeEEEEECCCCccc-cceeeCCCCCCcccceeEecC---CCEEEEEecCCCCCCCCceeEEEEeCCCCceEE---e-
Q 039497 457 SGHKNLFVLDAVNGEFN-GDIRQLTDGPWIDTMPSWSPK---GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR---I- 528 (642)
Q Consensus 457 ~g~~~l~~~d~~~g~~~-~~~~~l~~~~~~~~~~~~spd---G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---l- 528 (642)
..|.+||+.++... .....+..+...+..++|+|+ |++|+..+.++. |++||+.++.... +
T Consensus 180 ---g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~--------I~iwd~~~~~~~~~~~~~ 248 (753)
T 3jro_A 180 ---NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT--------CIIWTQDNEQGPWKKTLL 248 (753)
T ss_dssp ---SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC--------EEEEEESSSSSCCBCCBS
T ss_pred ---CeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE--------EEEecCCCCCCcceeEEe
Confidence 36888888766320 013445566677888999999 888888877664 8999998764221 1
Q ss_pred eecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 529 HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
....+.. .+..+.|+|||+.|+..+.++
T Consensus 249 ~~~~~~~-------~v~~l~~spdg~~l~s~s~Dg 276 (753)
T 3jro_A 249 KEEKFPD-------VLWRASWSLSGNVLALSGGDN 276 (753)
T ss_dssp SSSCCSS-------CCCCEEECTTTCCEEEECSSS
T ss_pred ccCCCCC-------ceEEEEEcCCCCEEEEEcCCC
Confidence 1112222 567899999999988877654
No 183
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.42 E-value=1.2e-11 Score=129.35 Aligned_cols=234 Identities=13% Similarity=0.118 Sum_probs=145.5
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCC----------CCe-eEEee-cCCceeeeeecCCC-EEEEEEcCCCcccC
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDG----------SKR-WTLIK-DRTAFYNSWSPTEK-HVIYTSTGPIFQSE 399 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~----------~~~-~~l~~-~~~~~~~~~spdg~-~l~~~~~~~~~~~~ 399 (642)
..++|+|++..+++.... ...|.++++.. ... ..+.. ...+..+.|+|+++ .|+... .
T Consensus 132 ~~l~~~p~~~~~lat~~~--dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-------~ 202 (430)
T 2xyi_A 132 NRARYMPQNACVIATKTP--SSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS-------D 202 (430)
T ss_dssp SEEEEETTEEEEEEEECS--SSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC-------T
T ss_pred EEEEECCCCCcEEEEECC--CCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe-------C
Confidence 567899985444444422 35677778764 222 22222 55688999999998 555554 3
Q ss_pred CCeEEEEEEEeecCCCCCCCCCc--cccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcccccee
Q 039497 400 RATVQIARVSFQLDPSDDNNREE--IPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR 477 (642)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~ 477 (642)
++.+.+|++.. ++.. .......+..+. ..+..+.|+|++..++++... ...|.+||+.++.....+.
T Consensus 203 dg~i~vwd~~~--------~~~~~~~~~~~~~~~~h~-~~v~~v~~~p~~~~~l~s~~~--dg~i~i~d~~~~~~~~~~~ 271 (430)
T 2xyi_A 203 DHTICLWDINA--------TPKEHRVIDAKNIFTGHT-AVVEDVAWHLLHESLFGSVAD--DQKLMIWDTRNNNTSKPSH 271 (430)
T ss_dssp TSCEEEEETTS--------CCBGGGEEECSEEECCCS-SCEEEEEECSSCTTEEEEEET--TSEEEEEETTCSCSSSCSE
T ss_pred CCeEEEEeCCC--------CCCCCceeccceeecCCC-CCEeeeEEeCCCCCEEEEEeC--CCeEEEEECCCCCCCccee
Confidence 78899999854 1110 000123344444 667889999955444444433 3489999998763101134
Q ss_pred eCCCCCCcccceeEecCCCEEE-EEecCCCCCCCCceeEEEEeCCCCc--eEEeeecCCCCCCCcccccccceEEcCCCC
Q 039497 478 QLTDGPWIDTMPSWSPKGDLIA-FSSNRHNPDNVEAFSLYVIKPDGSG--LRRIHVAGPEGSGDVDRERINHVCFSADGE 554 (642)
Q Consensus 478 ~l~~~~~~~~~~~~spdG~~l~-~~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~ 554 (642)
.+..+...+..++|+|+++.++ ..+.++ .|.+||+.... ...+. .+.. .+..+.|+|+++
T Consensus 272 ~~~~~~~~v~~i~~~p~~~~~l~tg~~dg--------~v~vwd~~~~~~~~~~~~--~h~~-------~v~~i~~sp~~~ 334 (430)
T 2xyi_A 272 TVDAHTAEVNCLSFNPYSEFILATGSADK--------TVALWDLRNLKLKLHSFE--SHKD-------EIFQVQWSPHNE 334 (430)
T ss_dssp EEECCSSCEEEEEECSSCTTEEEEEETTS--------EEEEEETTCTTSCSEEEE--CCSS-------CEEEEEECSSCT
T ss_pred EeecCCCCeEEEEeCCCCCCEEEEEeCCC--------eEEEEeCCCCCCCeEEee--cCCC-------CEEEEEECCCCC
Confidence 5555666788899999998644 444443 39999998633 22222 3333 578899999998
Q ss_pred EEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC---------------CceeeccCCCCCCCCcEEecCCc-eEEeec
Q 039497 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG---------------SGLRRLTWNGYENGTPAWHPGNQ-LDLGKL 618 (642)
Q Consensus 555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------~~~~~lt~~~~~~~~~~~s~dg~-~~~~~~ 618 (642)
.++++....+ .|.+|++.. ..+..+..+...+..+.|+|+++ ++++..
T Consensus 335 ~~l~s~~~d~----------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s 398 (430)
T 2xyi_A 335 TILASSGTDR----------------RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS 398 (430)
T ss_dssp TEEEEEETTS----------------CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE
T ss_pred CEEEEEeCCC----------------cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE
Confidence 7655554432 677778765 22334444555678999999998 555554
Q ss_pred C
Q 039497 619 R 619 (642)
Q Consensus 619 ~ 619 (642)
.
T Consensus 399 ~ 399 (430)
T 2xyi_A 399 E 399 (430)
T ss_dssp T
T ss_pred C
Confidence 3
No 184
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.40 E-value=5.8e-11 Score=124.18 Aligned_cols=190 Identities=12% Similarity=0.161 Sum_probs=121.5
Q ss_pred CccEEcCCCC-EEEEEecCCCceeEEEEECCCCCe--------eEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCe
Q 039497 333 SFPSFSPDGG-LIVFNHDFELNAGIKIAKSDGSKR--------WTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERAT 402 (642)
Q Consensus 333 ~~~~~spdg~-~l~~~~~~~~~~~l~~~d~~~~~~--------~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 402 (642)
..+.|+|+++ .|+.... ...|.++++..+.. ..+.. ...+..+.|+|++..++++. ..++.
T Consensus 185 ~~l~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~------~~dg~ 255 (430)
T 2xyi_A 185 YGLSWNPNLNGYLLSASD---DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV------ADDQK 255 (430)
T ss_dssp CCEEECTTSTTEEEEECT---TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE------ETTSE
T ss_pred EEEEeCCCCCCeEEEEeC---CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE------eCCCe
Confidence 5789999998 6655433 46788888876321 11111 45688999999554444444 23789
Q ss_pred EEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCC-ccccceeeCCC
Q 039497 403 VQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG-EFNGDIRQLTD 481 (642)
Q Consensus 403 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g-~~~~~~~~l~~ 481 (642)
+++|++.. . .... ....+..+. ..+..+.|+|++++++++...++ .|.+||+.+. +. +..+..
T Consensus 256 i~i~d~~~--~-----~~~~---~~~~~~~~~-~~v~~i~~~p~~~~~l~tg~~dg--~v~vwd~~~~~~~---~~~~~~ 319 (430)
T 2xyi_A 256 LMIWDTRN--N-----NTSK---PSHTVDAHT-AEVNCLSFNPYSEFILATGSADK--TVALWDLRNLKLK---LHSFES 319 (430)
T ss_dssp EEEEETTC--S-----CSSS---CSEEEECCS-SCEEEEEECSSCTTEEEEEETTS--EEEEEETTCTTSC---SEEEEC
T ss_pred EEEEECCC--C-----CCCc---ceeEeecCC-CCeEEEEeCCCCCCEEEEEeCCC--eEEEEeCCCCCCC---eEEeec
Confidence 99999865 1 1001 334444444 67788999999997666655444 7999999863 33 456666
Q ss_pred CCCcccceeEecCCCEEEEE-ecCCCCCCCCceeEEEEeCCCCc------------eEEee-ecCCCCCCCcccccccce
Q 039497 482 GPWIDTMPSWSPKGDLIAFS-SNRHNPDNVEAFSLYVIKPDGSG------------LRRIH-VAGPEGSGDVDRERINHV 547 (642)
Q Consensus 482 ~~~~~~~~~~spdG~~l~~~-~~~~~~~~~~~~~l~~~d~~~~~------------~~~l~-~~~~~~~~~~~~~~~~~~ 547 (642)
+...+..+.|+|+|+.++++ +.++. |.+||+.... ...+. ..++.. .+..+
T Consensus 320 h~~~v~~i~~sp~~~~~l~s~~~d~~--------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-------~v~~~ 384 (430)
T 2xyi_A 320 HKDEIFQVQWSPHNETILASSGTDRR--------LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-------KISDF 384 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSC--------CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-------CEEEE
T ss_pred CCCCEEEEEECCCCCCEEEEEeCCCc--------EEEEeCCCCccccCccccccCCcceEEEcCCCCC-------CceEE
Confidence 66778899999999764444 44433 8999987521 12222 223333 57889
Q ss_pred EEcCCCCEEEEEEec
Q 039497 548 CFSADGEWLLFTANL 562 (642)
Q Consensus 548 ~~S~Dg~~l~~~~~~ 562 (642)
.|+|++++++++...
T Consensus 385 ~~~p~~~~~l~s~s~ 399 (430)
T 2xyi_A 385 SWNPNEPWIICSVSE 399 (430)
T ss_dssp EECSSSTTEEEEEET
T ss_pred EECCCCCCEEEEEEC
Confidence 999999954444443
No 185
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.39 E-value=1.3e-07 Score=102.58 Aligned_cols=469 Identities=12% Similarity=0.037 Sum_probs=246.8
Q ss_pred eeeEEEecCCCCCCCCCc--eeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCccccc
Q 039497 18 GFDVFSIKSPFVNAPKFH--EHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDR 95 (642)
Q Consensus 18 ~~~i~~~~~~~~~~~~~~--~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~ 95 (642)
++.|+++...| .. ..-+...-......++. +.++.|+++. .+...|.+.+.+|.....+.. ..+.....
T Consensus 61 ~~~I~r~~~~g-----~~~~~~v~~~~~~~P~GlAvD-~~~~~ly~~d--~~~~~I~v~~~dG~~~~~l~~-~~l~~P~~ 131 (619)
T 3s94_A 61 EEAIKRTEFNK-----TESVQNVVVSGLLSPDGLACD-WLGEKLYWTD--SETNRIEVSNLDGSLRKVLFW-QELDQPRA 131 (619)
T ss_dssp TTEEEEEEC----------CEEEECSSCSCEEEEEEE-TTTTEEEEEE--TTTTEEEEEETTSCSCEEEEC-SSCSCCCC
T ss_pred CCeEEEEEccC-----CCceEEEEeCCCCCcCeEEEE-ecCCEEEEEe--CCCCEEEEEECCCCCEEEEEe-CCCCCCce
Confidence 45677777766 32 22333332334456677 8888888764 345567887777743222211 11222223
Q ss_pred ccc--CCCEEEEEEeccCCCcccccccceEEEEccCCceEeccc-CCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCe
Q 039497 96 PVA--RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTP-YGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELN 172 (642)
Q Consensus 96 ~~~--~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~ 172 (642)
.++ .++.|+|+..... ..|++.++++...+.+.. ........+++|++++|.++... .
T Consensus 132 Iavdp~~g~ly~tD~g~~--------~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~-----------~ 192 (619)
T 3s94_A 132 IALDPSSGFMYWTDWGEV--------PKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK-----------L 192 (619)
T ss_dssp EEEETTTTEEEEEECSSS--------CEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETT-----------T
T ss_pred EEEecCCCeEEEeccCCC--------CEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCC-----------C
Confidence 344 4678888764321 269999999877666653 33345667899999999888543 2
Q ss_pred eeEEEEEecCCCceeEeecCCCcc---eEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCC-----Cc
Q 039497 173 TDIVVFQESDPNKRVIVCERGGWP---TWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPG-----VH 244 (642)
Q Consensus 173 ~~l~~~~~~~g~~~~l~~~~~~~~---~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~-----~~ 244 (642)
..|+.+++++...+.+.......| ++..+ .+|++. . +...|++++..++. ....+...- ..
T Consensus 193 ~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td-~--~~~~V~~~d~~tg~-------~~~~i~~~~~~p~~i~ 261 (619)
T 3s94_A 193 NFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTD-W--STHSILACNKYTGE-------GLREIHSDIFSPMDIH 261 (619)
T ss_dssp CCEEEESSSCCEEC---------CCCEEESSS-EEEEEC-T--TTCSEEEEESSSCC-------CCEECCSCCCCCSEEE
T ss_pred CeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEec-C--CCCEEEEEECCCCc-------ccEEEecCCCCCcEEE
Confidence 368888887765555543222223 44333 454443 2 33478999987763 222322211 11
Q ss_pred cccceeecCCcEEEEEEeccCCceeeEEEEEeecC-CCCc-ccCCeecCCC--------CEEEEEEeecCCCCCCcccce
Q 039497 245 CFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLN-PNFH-HYNPFVSANS--------EFIGYHRFRGESTEGQSTIPH 314 (642)
Q Consensus 245 ~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~-~~~~-~~~~~~spDg--------~~l~~~~~~~~~~~~~~~~~~ 314 (642)
+.++...|.+..-. .... ..-..+.+...... ..+. .....+.+|+ ..|+|.. ... +.
T Consensus 262 v~~~~~qp~~~n~C--~~~n-g~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~-~~~--------i~ 329 (619)
T 3s94_A 262 AFSQQRQPNATNPC--GIDN-GGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLAR-RTD--------LR 329 (619)
T ss_dssp ECCGGGSCCCCCTT--TTTG-GGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEE-SSC--------EE
T ss_pred EEccccCCCccccc--cCCC-CcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEc-ccc--------eE
Confidence 11111111110000 0000 00111221110000 0000 0011222332 2344432 111 11
Q ss_pred EeeccCCCceeEEeeeC----CCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEE
Q 039497 315 LEPVASPVKELRMLRLN----GSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVI 388 (642)
Q Consensus 315 ~~~~~~~~~~~~~~~~~----~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~ 388 (642)
...++............ ...+.+.+.+.+|++... ....|+++++++.....+.. -.....+++.+.++.||
T Consensus 330 ~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~--~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY 407 (619)
T 3s94_A 330 RISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDD--EVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLY 407 (619)
T ss_dssp EEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEE
T ss_pred EEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeC--CCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEE
Confidence 12222221110111111 124567887777887653 35689999999876665554 24567788888888899
Q ss_pred EEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC
Q 039497 389 YTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV 468 (642)
Q Consensus 389 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~ 468 (642)
++.. ....+. .++. + +. ..+.+..........+++.|...+|+++.... ...|++.+++
T Consensus 408 ~tD~------~~~~I~--v~~~--~-----G~-----~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~-~~~I~r~~~d 466 (619)
T 3s94_A 408 WTDT------GTDRIE--VTRL--N-----GT-----MRKILISEDLEEPRAIVLDPMVGYMYWTDWGE-IPKIERAALD 466 (619)
T ss_dssp EEET------TTTEEE--EEET--T-----SC-----SCEEEECTTCCSEEEEEEETTTTEEEEEECSS-SCEEEEEETT
T ss_pred EEeC------CCCcEE--EEeC--C-----CC-----eEEEEEECCCCCeeeEEEEcCCCcEEEecCCC-CCEEEEEccC
Confidence 8873 244444 4444 3 22 23334332224566789999877888876432 3589999988
Q ss_pred CCccccceeeCCC-CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccce
Q 039497 469 NGEFNGDIRQLTD-GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV 547 (642)
Q Consensus 469 ~g~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 547 (642)
+... +.+.. .-.....++++++++.||++..... .|+.+++++...+.+...... .+..+
T Consensus 467 G~~~----~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~-------~I~~~~~dG~~~~~~~~~~l~--------~P~gl 527 (619)
T 3s94_A 467 GSDR----VVLVNTSLGWPNGLALDYDEGKIYWGDAKTD-------KIEVMNTDGTGRRVLVEDKIP--------HIFGF 527 (619)
T ss_dssp SCSC----EEEECSSCSCEEEEEEETTTTEEEEEETTTT-------EEEEEESSSCCCEEEEECCCC--------SSCCE
T ss_pred CCcc----EEEEeCCCCCCeeeEEcccCCEEEEEECCCC-------EEEEEecCCCceEEEeccCCC--------CcEEE
Confidence 4432 44433 2234466799999999999876543 599999998877766543322 23445
Q ss_pred EEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccC
Q 039497 548 CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW 597 (642)
Q Consensus 548 ~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~ 597 (642)
+. ++.+||++.... ..|++++..++..+.+..
T Consensus 528 av--~~~~ly~tD~~~----------------~~I~~~~k~~g~~~~~~~ 559 (619)
T 3s94_A 528 TL--LGDYVYWTDWQR----------------RSIERVHKRSAEREVIID 559 (619)
T ss_dssp EE--ETTEEEEECTTS----------------SCEEEEESSSCCEEEEEC
T ss_pred EE--ECCEEEEeecCC----------------CeEEEEEcCCCceEEEec
Confidence 55 445888876543 289999988776554443
No 186
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.38 E-value=1.6e-09 Score=110.39 Aligned_cols=280 Identities=11% Similarity=-0.003 Sum_probs=152.1
Q ss_pred ceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecC-------C
Q 039497 121 ALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCER-------G 193 (642)
Q Consensus 121 ~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-------~ 193 (642)
.++.+++.+++...-...+... .+++||||++|+++...... ..+......|.++++.+.+........ +
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~--~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g 124 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSR--IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVG 124 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccc--cccCCCCCeEEEEECCCCcEEEEEECCCccccccC
Confidence 4788898887765322222333 79999999999987532100 000011346789999877654432211 1
Q ss_pred ---CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceee
Q 039497 194 ---GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRH 270 (642)
Q Consensus 194 ---~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~ 270 (642)
..+.|+|||+.+|+.+.. ..-.|..+| .+++ ....+...+. .+.+.|+|+..++
T Consensus 125 ~~p~~~~~spDG~~l~v~n~~-~~~~v~viD-~t~~-------~~~~~i~~~~---~~~~~~~~~~~~~----------- 181 (373)
T 2mad_H 125 PYSWMNANTPNNADLLFFQFA-AGPAVGLVV-QGGS-------SDDQLLSSPT---CYHIHPGAPSTFY----------- 181 (373)
T ss_pred CCccceEECCCCCEEEEEecC-CCCeEEEEE-CCCC-------EEeEEcCCCc---eEEEEeCCCceEE-----------
Confidence 245999999877776432 123688888 8773 2223032221 1345566665444
Q ss_pred EEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCC-CceeEEeeeCCCccEEcCCCCEEEEEec
Q 039497 271 IEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASP-VKELRMLRLNGSFPSFSPDGGLIVFNHD 349 (642)
Q Consensus 271 i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~ 349 (642)
..++||+.+++.. .++. . ........ .... .....+.+++++..++|...
T Consensus 182 -----------------~~~~dg~~~~vd~-~g~~------~-~~~~~~~~~~~~~----p~~~~~~~~~~~~~~~~~~~ 232 (373)
T 2mad_H 182 -----------------LLCAQGGLAKTDH-AGGA------A-GAGLVGAMLTAAQ----NLLTQPAQANKSGRIVWPVY 232 (373)
T ss_pred -----------------EEcCCCCEEEEEC-CCcE------E-EEEeccccccCCc----ceeecceeEecCCEEEEEcC
Confidence 2445666655553 2221 0 00000000 0000 00013467888888888763
Q ss_pred CCCceeEEEEECCCCCeeEEee--------------cCCceeeeeecCCCEEEEEEcCCCc-ccCCCeEEEEEEEeecCC
Q 039497 350 FELNAGIKIAKSDGSKRWTLIK--------------DRTAFYNSWSPTEKHVIYTSTGPIF-QSERATVQIARVSFQLDP 414 (642)
Q Consensus 350 ~~~~~~l~~~d~~~~~~~~l~~--------------~~~~~~~~~spdg~~l~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 414 (642)
...++++|+.+...+.+.. ......+.++||+++|++....... ......-.|+.++. .
T Consensus 233 ---~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~--~- 306 (373)
T 2mad_H 233 ---SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG--L- 306 (373)
T ss_pred ---CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEEC--C-
Confidence 3589999987664332221 1122336789999988887532000 00011224555555 2
Q ss_pred CCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcc
Q 039497 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472 (642)
Q Consensus 415 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~ 472 (642)
+++ ....+... .....+.|||||++++|..+. +...|.++|+.+++.
T Consensus 307 ----t~~----vv~~i~~g--~~p~~i~~s~Dg~~~l~v~~~-~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 307 ----VGQ----TSSQISLG--HDVDAISVAQDGGPDLYALSA-GTEVLHIYDAGAGDQ 353 (373)
T ss_pred ----CCE----EEEEEECC--CCcCeEEECCCCCeEEEEEcC-CCCeEEEEECCCCCE
Confidence 121 33555433 356789999999966666653 234899999999886
No 187
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.36 E-value=6.3e-10 Score=114.00 Aligned_cols=301 Identities=13% Similarity=0.110 Sum_probs=162.8
Q ss_pred eCCeEEEEEecCCCc--eEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEec-----cCCceeeEE
Q 039497 200 GDSTIYFHRQADDGW--WSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRR-----KNRNFRHIE 272 (642)
Q Consensus 200 pdg~~~~~~~~~~g~--~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~-----~~~~~~~i~ 272 (642)
+|++.+|+.+..... -.|..+|..+.+ ...++.. +... .+++||||++|+++... .+.....+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~-------vv~~I~v-G~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~Vs 152 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGR-------ILGMTDG-GFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVE 152 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTE-------EEEEEEE-CSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCE-------EEEEEEC-CCCC-ceEECCCCCEEEEEeccccccccCCCCCEEE
Confidence 566656665432211 589999998873 3333433 3233 78999999999886531 011233566
Q ss_pred EEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCC
Q 039497 273 IYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFEL 352 (642)
Q Consensus 273 ~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 352 (642)
++|..+.. .+.-. .+.+.... ........+.++|||++++.... ..
T Consensus 153 viD~~t~~--------------vv~~I-----------------~v~g~~r~--~~g~~P~~~~~spDGk~lyV~n~-~~ 198 (426)
T 3c75_H 153 VFDPVTFL--------------PIADI-----------------ELPDAPRF--LVGTYQWMNALTPDNKNLLFYQF-SP 198 (426)
T ss_dssp EECTTTCC--------------EEEEE-----------------EETTCCCC--CBSCCGGGSEECTTSSEEEEEEC-SS
T ss_pred EEECCCCc--------------EEEEE-----------------ECCCcccc--ccCCCcceEEEcCCCCEEEEEec-CC
Confidence 66652211 11100 00000000 00011236689999998877643 23
Q ss_pred ceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceE----
Q 039497 353 NAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVK---- 428 (642)
Q Consensus 353 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---- 428 (642)
...|.++|+.+.+......-... ....|+|+..++... .++.+.+.+. . .+. ...
T Consensus 199 ~~~VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~v~~~------~dG~~~~V~~-~--------~~~----v~~~~~~ 257 (426)
T 3c75_H 199 APAVGVVDLEGKTFDRMLDVPDC--YHIFPASPTVFYMNC------RDGSLARVDF-A--------DGE----TKVTNTE 257 (426)
T ss_dssp SCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEE------TTSSEEEEEC-C--------TTC----CEEEECC
T ss_pred CCeEEEEECCCCeEEEEEEcCCc--eeeccCCCcEEEEEc------CCCCEEEEEC-C--------CCc----EEEEeee
Confidence 57899999998876543331111 233444443333321 1333333333 1 111 110
Q ss_pred EccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC------C-------CCcccceeEecCC
Q 039497 429 ILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD------G-------PWIDTMPSWSPKG 495 (642)
Q Consensus 429 ~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~------~-------~~~~~~~~~spdG 495 (642)
.+..........+.+++||+.++|.+.. ..++++|..++.. ..+.. . +.....+.++|||
T Consensus 258 ~~~v~~~p~~~~~~~~~dg~~~~~~s~~---g~V~ViD~~~~~~----~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg 330 (426)
T 3c75_H 258 VFHTEDELLINHPAFSLRSGRLVWPTYT---GKIFQADLTAEGA----TFRAPIEALTEAERADDWRPGGWQQTAYHRQS 330 (426)
T ss_dssp CCSCTTSCBCSCCEECTTTCEEEEEBTT---SEEEEEEECSSCE----EECCCEESSCTTTGGGTEEECSSSCEEEEGGG
T ss_pred eeccCCCceeeEeeecCCCCEEEEEeCC---CcEEEEeccCCce----EEeeeeeeccccccccccccCCceeeEEcCCC
Confidence 1111110112346789999999998752 3799999875542 22211 0 1112236899999
Q ss_pred CEEEEEecCCCCC--CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCC
Q 039497 496 DLIAFSSNRHNPD--NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP 573 (642)
Q Consensus 496 ~~l~~~~~~~~~~--~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~ 573 (642)
+++|+........ ......|.++|+.+.+...-...+. ....+.|+|||+.++|+.+...
T Consensus 331 ~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~---------~P~gia~spDg~~~lyv~n~~s--------- 392 (426)
T 3c75_H 331 DRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH---------EIDSINVSQDAEPLLYALSAGT--------- 392 (426)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE---------EECEEEECCSSSCEEEEEETTT---------
T ss_pred CEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC---------CcCeEEEccCCCEEEEEEcCCC---------
Confidence 9988876432100 0124679999999877654332221 3578999999995555555422
Q ss_pred CCCCCCCcEEEEEcCCCcee-ec
Q 039497 574 NQFQPYGDLYVVKLDGSGLR-RL 595 (642)
Q Consensus 574 ~~~~~~~~l~~~~~~~~~~~-~l 595 (642)
..|.++|+.+.++. ++
T Consensus 393 ------~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 393 ------QTLHIYDAATGEELRSV 409 (426)
T ss_dssp ------TEEEEEETTTCCEEEEE
T ss_pred ------CeEEEEECCCCCEEEEe
Confidence 28999999887744 44
No 188
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.35 E-value=1.9e-07 Score=101.30 Aligned_cols=441 Identities=12% Similarity=0.109 Sum_probs=241.9
Q ss_pred eEEEEEccCCCcceEEEcCCCCcccccCCCCCCcccccccc--CCCEEEEEEeccCCCcccccccceEEEEccCCceEec
Q 039497 58 TIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA--RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRL 135 (642)
Q Consensus 58 ~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 135 (642)
+|.|+.. .+|..++.++...........+.......+ .++.|+++.... +.|+++++.++....+
T Consensus 8 ~Ll~s~~----~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~---------~~I~r~~~~g~~~~~v 74 (628)
T 4a0p_A 8 FLLFSRR----ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISL---------KTISRAFMNGSALEHV 74 (628)
T ss_dssp EEEEEET----TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTT---------TEEEEEETTSCSCEEE
T ss_pred EEEEEeC----CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCC---------CeEEEEECCCCCcEEE
Confidence 6777632 356666555532221111122111112233 567888876542 2699999988766655
Q ss_pred ccCC-CccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCCc---ceEee-CCeEEEEEec
Q 039497 136 TPYG-VVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGW---PTWSG-DSTIYFHRQA 210 (642)
Q Consensus 136 t~~~-~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~---~~wsp-dg~~~~~~~~ 210 (642)
.... ......++.+.++.|.++... ...|++.++++...+.+....... ++..| +|.+|++...
T Consensus 75 ~~~g~~~P~GlAvD~~~~~LY~tD~~-----------~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g 143 (628)
T 4a0p_A 75 VEFGLDYPEGMAVDWLGKNLYWADTG-----------TNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG 143 (628)
T ss_dssp ECSSCSCCCEEEEETTTTEEEEEETT-----------TTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS
T ss_pred EeCCCCCcceEEEEeCCCEEEEEECC-----------CCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC
Confidence 4433 335567888888998887543 347889998877665555433333 37777 4567666522
Q ss_pred CCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCC-------CCc
Q 039497 211 DDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNP-------NFH 283 (642)
Q Consensus 211 ~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~-------~~~ 283 (642)
....|+++++++. ..+.+.........+++++++++|+++..... .|+.+++.... ...
T Consensus 144 --~~~~I~r~~~dG~--------~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~----~I~~~d~dG~~~~v~~~~l~~ 209 (628)
T 4a0p_A 144 --GKPKIDRAAMDGS--------ERTTLVPNVGRANGLTIDYAKRRLYWTDLDTN----LIESSNMLGLNREVIADDLPH 209 (628)
T ss_dssp --SSCEEEEEETTSC--------SCEEEECSCSSEEEEEEETTTTEEEEEETTTT----EEEEEETTSCSCEEEEECCSC
T ss_pred --CCCEEEEEeCCCC--------ceEEEECCCCCcceEEEccccCEEEEEECCCC----EEEEEcCCCCceEEeeccCCC
Confidence 2459999999887 44444433334456788999999999764332 55666552110 001
Q ss_pred ccCCeecCCCCEEEEEEeecCC------CCCCcccceEeeccCCCceeEEee-----------------------eC-C-
Q 039497 284 HYNPFVSANSEFIGYHRFRGES------TEGQSTIPHLEPVASPVKELRMLR-----------------------LN-G- 332 (642)
Q Consensus 284 ~~~~~~spDg~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~-~- 332 (642)
.. .+.-++..|++....... ..+.........+. .+..+.... .. +
T Consensus 210 P~--glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~-~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~ 286 (628)
T 4a0p_A 210 PF--GLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLD-YVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGG 286 (628)
T ss_dssp EE--EEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCC-SCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTE
T ss_pred ce--EEEEECCEEEEecCCCCEEEEEECCCCCceEEEecCCC-CcceeeeeeecccccceEeccCCCCcchhhhcCCCCC
Confidence 11 122233344443211110 00000000000000 000111100 00 0
Q ss_pred ------CccEEcCCCC-------EEEEEecCCCceeEEEEECCCCCe--eEEee--cCCceeeeeecCCCEEEEEEcCCC
Q 039497 333 ------SFPSFSPDGG-------LIVFNHDFELNAGIKIAKSDGSKR--WTLIK--DRTAFYNSWSPTEKHVIYTSTGPI 395 (642)
Q Consensus 333 ------~~~~~spdg~-------~l~~~~~~~~~~~l~~~d~~~~~~--~~l~~--~~~~~~~~~spdg~~l~~~~~~~~ 395 (642)
......+|++ .|+|.. ...|..+.++.... ..+.. -..+..+.|.+.++.|+++..
T Consensus 287 ~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~----~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~--- 359 (628)
T 4a0p_A 287 FVCGCPAHYSLNADNRTCSAPTTFLLFSQ----KSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDS--- 359 (628)
T ss_dssp EEEECSTTCEECTTSSCEECCSSEEEEEE----TTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEET---
T ss_pred eeEEcCCCcEecccCCcCccccceeeeec----cceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEec---
Confidence 0112334442 344432 24566666654332 11111 244667889998889998873
Q ss_pred cccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc-----cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCC
Q 039497 396 FQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK-----EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG 470 (642)
Q Consensus 396 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g 470 (642)
..-.|+.+.. + +.. ....+.. ........+++...++.|+++... ...|.+.+++ |
T Consensus 360 -----~~~~I~r~~~--~------g~~---~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~--~~~I~v~~~~-G 420 (628)
T 4a0p_A 360 -----RQNMIRKAQE--D------GSQ---GFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEA--TNVINVTRLD-G 420 (628)
T ss_dssp -----TTTEEEEEET--T------SCS---CEEEEC--------CCCEEEEEEETTTTEEEEEETT--TTEEEEEETT-S
T ss_pred -----CcceEEEEEc--C------CCC---ceEEEEcccccccccCCcceEEeeccCCeEEEEcCC--CCEEEEEECC-C
Confidence 2234555555 3 211 1222322 011345678888889999888753 4478888887 5
Q ss_pred ccccceeeCC-CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEE
Q 039497 471 EFNGDIRQLT-DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCF 549 (642)
Q Consensus 471 ~~~~~~~~l~-~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 549 (642)
+. .+.|. ........+++.|...+|+++.... ....|++.++++...+.+...... .+..+++
T Consensus 421 ~~---~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~-----~~~~I~r~~~dG~~~~~l~~~~l~--------~P~gla~ 484 (628)
T 4a0p_A 421 RS---VGVVLKGEQDRPRAVVVNPEKGYMYFTNLQE-----RSPKIERAALDGTEREVLFFSGLS--------KPIALAL 484 (628)
T ss_dssp CE---EEEEEECTTCCEEEEEEETTTTEEEEEEEET-----TEEEEEEEETTSCSCEEEECSSCS--------CEEEEEE
T ss_pred Ce---EEEEEeCCCCceeeEEEecCCCeEEEeecCC-----CCCeEEEEeCCCCCcEEEEeccCC--------CccEEEE
Confidence 53 33443 2223456779999666788876533 123799999999887777653322 4578999
Q ss_pred cCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccC
Q 039497 550 SADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW 597 (642)
Q Consensus 550 S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~ 597 (642)
++++++||++..... .|+.++++|...+.+..
T Consensus 485 D~~~~~LYw~D~~~~----------------~I~~~~~dG~~r~~~~~ 516 (628)
T 4a0p_A 485 DSRLGKLFWADSDLR----------------RIESSDLSGANRIVLED 516 (628)
T ss_dssp ETTTTEEEEEETTTT----------------EEEEEETTSCSCEEEEC
T ss_pred eCCCCEEEEEeCCCC----------------EEEEEeCCCCceEEEEc
Confidence 999999999876432 89999999987666653
No 189
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.31 E-value=2.6e-09 Score=107.37 Aligned_cols=317 Identities=12% Similarity=0.077 Sum_probs=169.6
Q ss_pred ccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEe-cccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCee
Q 039497 95 RPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTR-LTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNT 173 (642)
Q Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~ 173 (642)
.|..++++++.+..... ...+.++.+|..+++... +..+. .. +.++||||++|+.+..... .+.......
T Consensus 39 ~~~pd~~~vyV~~~~~~-----~~~~~V~ViD~~t~~v~~~I~vG~-~P-~va~spDG~~lyVan~~~~--r~~~G~~~~ 109 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHF-----AAVTQQFVIDGEAGRVIGMIDGGF-LP-NPVVADDGSFIAHASTVFS--RIARGERTD 109 (386)
T ss_dssp CCCCCTTEEEEEECGGG-----CSSEEEEEEETTTTEEEEEEEECS-SC-EEEECTTSSCEEEEEEEEE--ETTEEEEEE
T ss_pred ccCCCCCEEEEEcCccc-----CCCCEEEEEECCCCeEEEEEECCC-CC-cEEECCCCCEEEEEccccc--ccccCCCCC
Confidence 34445666655544311 111379999999887654 43332 23 3899999999876642100 000000134
Q ss_pred eEEEEEecCCCceeEe-ecC------C---CcceEeeCCeEEEEEec-CCCceEEEEEecCCCcccccCCccceeeCCCC
Q 039497 174 DIVVFQESDPNKRVIV-CER------G---GWPTWSGDSTIYFHRQA-DDGWWSIFRVSFPENLEFLGFPIAPTRVTPPG 242 (642)
Q Consensus 174 ~l~~~~~~~g~~~~l~-~~~------~---~~~~wspdg~~~~~~~~-~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 242 (642)
.|.++|..+.+...-. ... + ....++|||+.+|+.+. .++ .|..+|..+++ ....+..++
T Consensus 110 ~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~--~VsVID~~t~~-------vv~tI~v~g 180 (386)
T 3sjl_D 110 YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP--AVGVVDLEGKA-------FKRMLDVPD 180 (386)
T ss_dssp EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC--EEEEEETTTTE-------EEEEEECCS
T ss_pred EEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCC--eEEEEECCCCc-------EEEEEECCC
Confidence 6889999998865433 222 1 23599999987777743 234 78889998873 333443222
Q ss_pred CccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC-C
Q 039497 243 VHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS-P 321 (642)
Q Consensus 243 ~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~ 321 (642)
. ..+.|.|.+.++ ..++||+.+++....... .. ...... .
T Consensus 181 ~----~~~~P~g~~~~~----------------------------~~~~DG~~~~v~~~~~g~-----v~--~~~~~~~~ 221 (386)
T 3sjl_D 181 C----YHIFPTAPDTFF----------------------------MHCRDGSLAKVAFGTEGT-----PE--ITHTEVFH 221 (386)
T ss_dssp E----EEEEEEETTEEE----------------------------EEETTSCEEEEECCSSSC-----CE--EEECCCCS
T ss_pred c----ceeecCCCceeE----------------------------EECCCCCEEEEECCCCCe-----EE--Eeecceec
Confidence 1 001111111111 234455443333211110 00 000000 0
Q ss_pred CceeEEeeeCCCccEE-cCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--------------cCCceeeeeecCCCE
Q 039497 322 VKELRMLRLNGSFPSF-SPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--------------DRTAFYNSWSPTEKH 386 (642)
Q Consensus 322 ~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--------------~~~~~~~~~spdg~~ 386 (642)
... ..-...+.| .+|| +++|++. ...++++|+.+.....+.. .+....+.++|++++
T Consensus 222 ~~~----~~~~~~~~~~~~dG-~~~~vs~---~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~ 293 (386)
T 3sjl_D 222 PED----EFLINHPAYSQKAG-RLVWPTY---TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR 293 (386)
T ss_dssp CTT----SCBCSCCEEETTTT-EEEEEBT---TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTE
T ss_pred ccc----ccccccceeEcCCC-cEEEEeC---CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCe
Confidence 000 000113466 4677 4667665 3579999998775432211 223445778999999
Q ss_pred EEEEEcCC-CcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEE
Q 039497 387 VIYTSTGP-IFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVL 465 (642)
Q Consensus 387 l~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~ 465 (642)
||+..... ........-++|.++. . +++ ..+.+.-+. ....+.+||||+.++|..+. +...|.++
T Consensus 294 lyV~~~~~~~~~hk~~~~~V~viD~--~-----t~k----v~~~i~vg~--~~~~lavs~D~~~~ly~tn~-~~~~VsVi 359 (386)
T 3sjl_D 294 IYLLVDQRDEWRHKTASRFVVVLDA--K-----TGE----RLAKFEMGH--EIDSINVSQDEKPLLYALST-GDKTLYIH 359 (386)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEET--T-----TCC----EEEEEEEEE--EECEEEECSSSSCEEEEEET-TTTEEEEE
T ss_pred EEEEeccccccccCCCCCEEEEEEC--C-----CCe----EEEEEECCC--CcceEEECCCCCeEEEEEcC-CCCeEEEE
Confidence 99876421 1111123467888877 3 221 344444432 45679999999855566543 34589999
Q ss_pred ECCCCccccceeeCCCCCCcccceeEecC
Q 039497 466 DAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494 (642)
Q Consensus 466 d~~~g~~~~~~~~l~~~~~~~~~~~~spd 494 (642)
|..+++. ++.+... .....+.+++|
T Consensus 360 D~~t~k~---~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 360 DAESGEE---LRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp ETTTCCE---EEEECCC-CSSCCEEEECC
T ss_pred ECCCCcE---EEEecCC-CCCceeEECCc
Confidence 9999986 5555544 34456777877
No 190
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.30 E-value=1.6e-10 Score=119.14 Aligned_cols=109 Identities=15% Similarity=0.105 Sum_probs=70.8
Q ss_pred CCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee---c--CCC---cceEee--------CCeEEE
Q 039497 143 YSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC---E--RGG---WPTWSG--------DSTIYF 206 (642)
Q Consensus 143 ~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~---~--~~~---~~~wsp--------dg~~~~ 206 (642)
....++|++++||....+. .|.+|++.+++...... . +.. .++|+| ||++++
T Consensus 93 ~~~~~~~~~~~las~~~d~------------~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~la 160 (393)
T 4gq1_A 93 NVNSSPVYSLFLACVCQDN------------TVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIA 160 (393)
T ss_dssp ----CCEEEEEEEEEETTS------------CEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEE
T ss_pred ceeecCCCCCEEEEEeCCC------------cEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEE
Confidence 3356788999999988766 68899998886543221 1 122 358988 888888
Q ss_pred EEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcE-EEEEEeccCCceeeEEEEEeec
Q 039497 207 HRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKR-LAVATRRKNRNFRHIEIYDLTL 278 (642)
Q Consensus 207 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~-l~~~~~~~~~~~~~i~~~d~~~ 278 (642)
+. ..|++..||.+. ++. ....+..+...+..++|+|++.. |+....+ ..+++||+..
T Consensus 161 s~-s~D~tv~~Wd~~--~~~-------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-----~~v~~wd~~t 218 (393)
T 4gq1_A 161 SV-GDDCTLIIWRLT--DEG-------PILAGYPLSSPGISVQFRPSNPNQLIVGERN-----GNIRIFDWTL 218 (393)
T ss_dssp EE-ETTSEEEEEEEE--TTE-------EEEEEEECSSCEEEEEEETTEEEEEEEEETT-----SEEEEEETTC
T ss_pred EE-ECCCeEEEEECC--CCc-------eeeeecCCCCCcEEEEECCCCCceEEecCCC-----CEEEEEECCC
Confidence 87 568877776554 331 33444445556778999999875 4443333 3899999843
No 191
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.30 E-value=6.2e-11 Score=122.32 Aligned_cols=232 Identities=8% Similarity=-0.070 Sum_probs=133.7
Q ss_pred EEcCCCCEEEEEecCCCceeEEEEECCCCCeeEE--ee-----cCCceeeeeec--------CCCEEEEEEcCCCcccCC
Q 039497 336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTL--IK-----DRTAFYNSWSP--------TEKHVIYTSTGPIFQSER 400 (642)
Q Consensus 336 ~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l--~~-----~~~~~~~~~sp--------dg~~l~~~~~~~~~~~~~ 400 (642)
.++++++.|+..+. + ..|.+++++.++.... .. ...+..+.|+| ||+.|+..+. +
T Consensus 96 ~~~~~~~~las~~~-d--~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~-------D 165 (393)
T 4gq1_A 96 SSPVYSLFLACVCQ-D--NTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD-------D 165 (393)
T ss_dssp -CCEEEEEEEEEET-T--SCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET-------T
T ss_pred ecCCCCCEEEEEeC-C--CcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC-------C
Confidence 34566666666554 2 5566667666654322 11 45688999998 8888888874 7
Q ss_pred CeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC-
Q 039497 401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL- 479 (642)
Q Consensus 401 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l- 479 (642)
..++||++.. ++ ....+..+. ..+..++|+|++..++.+...+ ..|.+||+.+++. ...+
T Consensus 166 ~tv~~Wd~~~--------~~-----~~~~~~~~~-~~v~~v~~~p~~~~~l~~~~~d--~~v~~wd~~t~~~---~~~~~ 226 (393)
T 4gq1_A 166 CTLIIWRLTD--------EG-----PILAGYPLS-SPGISVQFRPSNPNQLIVGERN--GNIRIFDWTLNLS---AEENS 226 (393)
T ss_dssp SEEEEEEEET--------TE-----EEEEEEECS-SCEEEEEEETTEEEEEEEEETT--SEEEEEETTCCC---------
T ss_pred CeEEEEECCC--------Cc-----eeeeecCCC-CCcEEEEECCCCCceEEecCCC--CEEEEEECCCCcc---ccccc
Confidence 8999999976 23 344444444 5677899999987544444433 3788999988764 1111
Q ss_pred ------------------------CCCCCcccceeEe-cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCC
Q 039497 480 ------------------------TDGPWIDTMPSWS-PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534 (642)
Q Consensus 480 ------------------------~~~~~~~~~~~~s-pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 534 (642)
..+...+..+.|+ |||+.|+..+.++. +.+||+..++....... ..
T Consensus 227 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~--------i~vwd~~~~~~~~~l~~-~~ 297 (393)
T 4gq1_A 227 QTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGA--------WLRWNLFANNDYNEISD-ST 297 (393)
T ss_dssp ----CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSE--------EEEEEC--------------
T ss_pred ccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCC--------EEEEECccCCCCceEee-ec
Confidence 1112234455665 89999888776653 88999876543221110 00
Q ss_pred CCC-----Ccc------cccccceEEcC-CCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCC
Q 039497 535 GSG-----DVD------RERINHVCFSA-DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYE 601 (642)
Q Consensus 535 ~~~-----~~~------~~~~~~~~~S~-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~ 601 (642)
... ..+ ........|++ .++.++.+.... +.|++||...++ ...+..+...
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~D----------------g~V~lwd~~~~~~~~~~~~~~~~ 361 (393)
T 4gq1_A 298 MKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQH----------------GLIQLINTYEKDSNSIPIQLGMP 361 (393)
T ss_dssp ------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTT----------------TEEEEEETTCTTCCEEEEECSSC
T ss_pred CccccEEEccccccccccCcceeEEEccCCCCEEEEEECCC----------------CEEEEEECCCCcEEEEecCCCCc
Confidence 000 000 00112233433 344444444332 278999988765 3444555567
Q ss_pred CCCcEEecCCceEEeecCCC
Q 039497 602 NGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 602 ~~~~~~s~dg~~~~~~~~~~ 621 (642)
+.+++|||||++|++..+.|
T Consensus 362 V~svafspdG~~LA~as~~G 381 (393)
T 4gq1_A 362 IVDFCWHQDGSHLAIATEGS 381 (393)
T ss_dssp EEEEEECTTSSEEEEEESSE
T ss_pred EEEEEEcCCCCEEEEEeCCC
Confidence 78999999999998775544
No 192
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.28 E-value=1.8e-09 Score=113.02 Aligned_cols=271 Identities=12% Similarity=0.087 Sum_probs=165.4
Q ss_pred eeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC-cceEeeCCeEEEEEecCCCceEEEEEecCC
Q 039497 146 SVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG-WPTWSGDSTIYFHRQADDGWWSIFRVSFPE 224 (642)
Q Consensus 146 ~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~-~~~wspdg~~~~~~~~~~g~~~l~~~~~~~ 224 (642)
.+++||++||....++ .|.+|++.+++.......+.. ......++.++++. ..+|...+| +..+
T Consensus 138 ~~~~d~~~l~~g~~dg------------~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg-~~dg~i~vw--d~~~ 202 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDN------------TIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITG-SSDSTVRVW--DVNT 202 (435)
T ss_dssp EEECCSSEEEEEESSS------------CEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEE-ETTSCEEEE--ESSS
T ss_pred EEEECCCEEEEEeCCC------------eEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEE-cCCCeEEEE--ECCC
Confidence 5678999999987665 799999999887666554433 33444588888887 567855554 5555
Q ss_pred CcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecC
Q 039497 225 NLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGE 304 (642)
Q Consensus 225 ~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~ 304 (642)
+. ....+..+...+..++++ +..|+....++ .+.+||+..... +...
T Consensus 203 ~~-------~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg-----~i~vwd~~~~~~--------------~~~~----- 249 (435)
T 1p22_A 203 GE-------MLNTLIHHCEAVLHLRFN--NGMMVTCSKDR-----SIAVWDMASPTD--------------ITLR----- 249 (435)
T ss_dssp CC-------EEEEECCCCSCEEEEECC--TTEEEEEETTS-----CEEEEECSSSSC--------------CEEE-----
T ss_pred Cc-------EEEEEcCCCCcEEEEEEc--CCEEEEeeCCC-----cEEEEeCCCCCC--------------ceee-----
Confidence 53 445556665566666664 45677655443 788888732210 0000
Q ss_pred CCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeec
Q 039497 305 STEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSP 382 (642)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~sp 382 (642)
..+.+.... ...++.+++.|+.... ...|.++|+.+++...... ...+..+.|
T Consensus 250 -----------~~~~~~~~~---------v~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~-- 304 (435)
T 1p22_A 250 -----------RVLVGHRAA---------VNVVDFDDKYIVSASG---DRTIKVWNTSTCEFVRTLNGHKRGIACLQY-- 304 (435)
T ss_dssp -----------EEECCCSSC---------EEEEEEETTEEEEEET---TSEEEEEETTTCCEEEEEECCSSCEEEEEE--
T ss_pred -----------eEecCCCCc---------EEEEEeCCCEEEEEeC---CCeEEEEECCcCcEEEEEcCCCCcEEEEEe--
Confidence 000000001 1122337887777654 3678889998877554443 344556666
Q ss_pred CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeE
Q 039497 383 TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNL 462 (642)
Q Consensus 383 dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l 462 (642)
+++.|+..+. ++.+++|++.. +. ....+..+. ..+..+.| |+++|+..+.+ ..|
T Consensus 305 ~~~~l~~g~~-------dg~i~iwd~~~--------~~-----~~~~~~~h~-~~v~~~~~--~~~~l~sg~~d---g~i 358 (435)
T 1p22_A 305 RDRLVVSGSS-------DNTIRLWDIEC--------GA-----CLRVLEGHE-ELVRCIRF--DNKRIVSGAYD---GKI 358 (435)
T ss_dssp ETTEEEEEET-------TSCEEEEETTT--------CC-----EEEEECCCS-SCEEEEEC--CSSEEEEEETT---SCE
T ss_pred CCCEEEEEeC-------CCeEEEEECCC--------CC-----EEEEEeCCc-CcEEEEEe--cCCEEEEEeCC---CcE
Confidence 5777777763 78899999865 22 455555554 55666666 78888877643 478
Q ss_pred EEEECCCCccc------cceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce
Q 039497 463 FVLDAVNGEFN------GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL 525 (642)
Q Consensus 463 ~~~d~~~g~~~------~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~ 525 (642)
.+||+.+++.+ ..+..+..+...+..++| ||++|+..+.++. |.+||+.++..
T Consensus 359 ~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~--------i~iwd~~~~~~ 417 (435)
T 1p22_A 359 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDT--------ILIWDFLNDPA 417 (435)
T ss_dssp EEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSE--------EEEEC------
T ss_pred EEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCE--------EEEEECCCCCC
Confidence 99998765410 014556666666777777 7888877766553 99999976544
No 193
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.28 E-value=1.1e-09 Score=112.09 Aligned_cols=297 Identities=13% Similarity=0.063 Sum_probs=163.0
Q ss_pred ceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEe-ec-C-----C
Q 039497 121 ALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIV-CE-R-----G 193 (642)
Q Consensus 121 ~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~-~~-~-----~ 193 (642)
.|..+|+.+++...--..+... ...+||||++|+........ .........|.++|..+.+...-. .. . +
T Consensus 100 ~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~--~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g 176 (426)
T 3c75_H 100 QQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFER--IARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG 176 (426)
T ss_dssp EEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEE--TTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred eEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccc--cccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence 7999999998765433233334 78999999998877531100 000002447899999998865433 22 1 1
Q ss_pred ---CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceee
Q 039497 194 ---GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRH 270 (642)
Q Consensus 194 ---~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~ 270 (642)
....++|||+.+|+.+.. ....|..+|..+.+ ....+.-.+. ..+.|+|++.++
T Consensus 177 ~~P~~~~~spDGk~lyV~n~~-~~~~VsVID~~t~k-------vv~~I~v~g~----~~~~p~g~~~~v----------- 233 (426)
T 3c75_H 177 TYQWMNALTPDNKNLLFYQFS-PAPAVGVVDLEGKT-------FDRMLDVPDC----YHIFPASPTVFY----------- 233 (426)
T ss_dssp CCGGGSEECTTSSEEEEEECS-SSCEEEEEETTTTE-------EEEEEECCSE----EEEEEEETTEEE-----------
T ss_pred CCcceEEEcCCCCEEEEEecC-CCCeEEEEECCCCe-------EEEEEEcCCc----eeeccCCCcEEE-----------
Confidence 246999999877776432 12378889998873 3333433221 223344443333
Q ss_pred EEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEe--eccCCCceeEEeeeCCCccEEcCCCCEEEEEe
Q 039497 271 IEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLE--PVASPVKELRMLRLNGSFPSFSPDGGLIVFNH 348 (642)
Q Consensus 271 i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 348 (642)
.+++||+.+++....+. ..... ..+-... .....+.++++|++++|..
T Consensus 234 -----------------~~~~dG~~~~V~~~~~~-------v~~~~~~~~~v~~~------p~~~~~~~~~dg~~~~~~s 283 (426)
T 3c75_H 234 -----------------MNCRDGSLARVDFADGE-------TKVTNTEVFHTEDE------LLINHPAFSLRSGRLVWPT 283 (426)
T ss_dssp -----------------EEETTSSEEEEECCTTC-------CEEEECCCCSCTTS------CBCSCCEECTTTCEEEEEB
T ss_pred -----------------EEcCCCCEEEEECCCCc-------EEEEeeeeeccCCC------ceeeEeeecCCCCEEEEEe
Confidence 24455554444421111 00000 0000000 0012346899999999986
Q ss_pred cCCCceeEEEEECCCCCeeEEee--------------cCCceeeeeecCCCEEEEEEcCCC-cccCCCeEEEEEEEeecC
Q 039497 349 DFELNAGIKIAKSDGSKRWTLIK--------------DRTAFYNSWSPTEKHVIYTSTGPI-FQSERATVQIARVSFQLD 413 (642)
Q Consensus 349 ~~~~~~~l~~~d~~~~~~~~l~~--------------~~~~~~~~~spdg~~l~~~~~~~~-~~~~~~~~~l~~~~~~~~ 413 (642)
. ...++++|..+.....+.. ......+.++||+++||+...... .......-.++.++. .
T Consensus 284 ~---~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~--~ 358 (426)
T 3c75_H 284 Y---TGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNA--E 358 (426)
T ss_dssp T---TSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEET--T
T ss_pred C---CCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEEC--C
Confidence 5 2579999987765332211 112234689999999988753100 000012345666665 2
Q ss_pred CCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEec
Q 039497 414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493 (642)
Q Consensus 414 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~sp 493 (642)
..+ ....+.-+ .....+.|+|||+.++|..+. +...|.++|+.+++. ++.+... +.......+|
T Consensus 359 -----T~k----vv~~I~vg--~~P~gia~spDg~~~lyv~n~-~s~~VsVID~~t~kv---v~tI~~v-G~~P~~i~~~ 422 (426)
T 3c75_H 359 -----TGE----RINKIELG--HEIDSINVSQDAEPLLYALSA-GTQTLHIYDAATGEE---LRSVDQL-GRGPQIITTH 422 (426)
T ss_dssp -----TCC----EEEEEEEE--EEECEEEECCSSSCEEEEEET-TTTEEEEEETTTCCE---EEEECCC-SSSCCEEECC
T ss_pred -----CCe----EEEEEECC--CCcCeEEEccCCCEEEEEEcC-CCCeEEEEECCCCCE---EEEecCC-CCCCcEEEcC
Confidence 221 44444433 246778999999944455542 234899999999986 5565221 2222345555
Q ss_pred C
Q 039497 494 K 494 (642)
Q Consensus 494 d 494 (642)
|
T Consensus 423 ~ 423 (426)
T 3c75_H 423 D 423 (426)
T ss_dssp C
T ss_pred C
Confidence 5
No 194
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.25 E-value=2.4e-09 Score=111.98 Aligned_cols=268 Identities=12% Similarity=0.090 Sum_probs=161.6
Q ss_pred ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEE
Q 039497 196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD 275 (642)
Q Consensus 196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d 275 (642)
..+++|+..+++. ..+|...+| +..++. ....+..+...+..+++ +++.|+....++ .|.+||
T Consensus 137 ~~~~~d~~~l~~g-~~dg~i~iw--d~~~~~-------~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg-----~i~vwd 199 (435)
T 1p22_A 137 YCLQYDDQKIVSG-LRDNTIKIW--DKNTLE-------CKRILTGHTGSVLCLQY--DERVIITGSSDS-----TVRVWD 199 (435)
T ss_dssp EEEECCSSEEEEE-ESSSCEEEE--ESSSCC-------EEEEECCCSSCEEEEEC--CSSEEEEEETTS-----CEEEEE
T ss_pred EEEEECCCEEEEE-eCCCeEEEE--eCCCCe-------EEEEEcCCCCcEEEEEE--CCCEEEEEcCCC-----eEEEEE
Confidence 3667788888877 457755554 566653 44556666555655555 888888865444 789998
Q ss_pred eecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCcee
Q 039497 276 LTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG 355 (642)
Q Consensus 276 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 355 (642)
+... +.+... ......+ ..+.|+ ++.++..+. ...
T Consensus 200 ~~~~--------------~~~~~~-------------------~~h~~~v-------~~l~~~--~~~l~s~s~---dg~ 234 (435)
T 1p22_A 200 VNTG--------------EMLNTL-------------------IHHCEAV-------LHLRFN--NGMMVTCSK---DRS 234 (435)
T ss_dssp SSSC--------------CEEEEE-------------------CCCCSCE-------EEEECC--TTEEEEEET---TSC
T ss_pred CCCC--------------cEEEEE-------------------cCCCCcE-------EEEEEc--CCEEEEeeC---CCc
Confidence 7322 111110 0000111 122333 455665543 367
Q ss_pred EEEEECCCCCeeEE---ee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497 356 IKIAKSDGSKRWTL---IK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL 430 (642)
Q Consensus 356 l~~~d~~~~~~~~l---~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 430 (642)
|.++|+.++..... .. ...+..+.| +++.|+..+. ++.+.+|++.. +. ....+
T Consensus 235 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~-------dg~i~vwd~~~--------~~-----~~~~~ 292 (435)
T 1p22_A 235 IAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG-------DRTIKVWNTST--------CE-----FVRTL 292 (435)
T ss_dssp EEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET-------TSEEEEEETTT--------CC-----EEEEE
T ss_pred EEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC-------CCeEEEEECCc--------Cc-----EEEEE
Confidence 88888877664422 11 344556666 7888888764 78899998854 22 44555
Q ss_pred cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCC
Q 039497 431 TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV 510 (642)
Q Consensus 431 ~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~ 510 (642)
..+. ..+..+.| +++.|+..+. +..|.+||+.+++. +..+..+...+..+.| ++++|+..+.++.
T Consensus 293 ~~~~-~~v~~~~~--~~~~l~~g~~---dg~i~iwd~~~~~~---~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~---- 357 (435)
T 1p22_A 293 NGHK-RGIACLQY--RDRLVVSGSS---DNTIRLWDIECGAC---LRVLEGHEELVRCIRF--DNKRIVSGAYDGK---- 357 (435)
T ss_dssp ECCS-SCEEEEEE--ETTEEEEEET---TSCEEEEETTTCCE---EEEECCCSSCEEEEEC--CSSEEEEEETTSC----
T ss_pred cCCC-CcEEEEEe--CCCEEEEEeC---CCeEEEEECCCCCE---EEEEeCCcCcEEEEEe--cCCEEEEEeCCCc----
Confidence 5444 55555666 5777777763 34799999998886 5667666666666666 7888888887765
Q ss_pred CceeEEEEeCCCCce--------EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcE
Q 039497 511 EAFSLYVIKPDGSGL--------RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDL 582 (642)
Q Consensus 511 ~~~~l~~~d~~~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 582 (642)
|.+||+.++.. .......+.+ .+..+.| |++.|+..+.++ .|
T Consensus 358 ----i~vwd~~~~~~~~~~~~~~~~~~~~~h~~-------~v~~l~~--~~~~l~s~s~Dg-----------------~i 407 (435)
T 1p22_A 358 ----IKVWDLVAALDPRAPAGTLCLRTLVEHSG-------RVFRLQF--DEFQIVSSSHDD-----------------TI 407 (435)
T ss_dssp ----EEEEEHHHHTSTTSCTTTTEEEEECCCSS-------CCCCEEE--CSSCEEECCSSS-----------------EE
T ss_pred ----EEEEECCCCCCccccccchheeeccCCCC-------CeEEEEe--CCCEEEEEeCCC-----------------EE
Confidence 99999865431 1112223344 5677778 888877666554 68
Q ss_pred EEEEcCCCce
Q 039497 583 YVVKLDGSGL 592 (642)
Q Consensus 583 ~~~~~~~~~~ 592 (642)
.+|++.....
T Consensus 408 ~iwd~~~~~~ 417 (435)
T 1p22_A 408 LIWDFLNDPA 417 (435)
T ss_dssp EEEC------
T ss_pred EEEECCCCCC
Confidence 8888776543
No 195
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.25 E-value=3.4e-09 Score=103.86 Aligned_cols=173 Identities=9% Similarity=0.009 Sum_probs=104.0
Q ss_pred ceeEEEEECCC-CCe-eEEee-cCCceeeeeec---CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccc
Q 039497 353 NAGIKIAKSDG-SKR-WTLIK-DRTAFYNSWSP---TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD 426 (642)
Q Consensus 353 ~~~l~~~d~~~-~~~-~~l~~-~~~~~~~~~sp---dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 426 (642)
...|.++++.. ++. ..+.. ...+..+.|+| |++.|+-.+. +..++||++.. +. .
T Consensus 156 d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~-------D~TIkIWDl~T--------Gk-----~ 215 (356)
T 2w18_A 156 DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTI-------MNNIVIWNLKT--------GQ-----L 215 (356)
T ss_dssp TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEET-------TSEEEEEETTT--------CC-----E
T ss_pred CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecC-------CCcEEEEECCC--------Cc-----E
Confidence 35566666632 332 22222 55677888999 7788877764 89999999965 33 4
Q ss_pred eEEccccCC--CCccCcEECCCCCeEEEEeCC---------CCceeEEEEECCCCccccceeeCC---CCCCcccceeEe
Q 039497 427 VKILTKEET--GNNAFPSCSPDGKFLVFRSGR---------SGHKNLFVLDAVNGEFNGDIRQLT---DGPWIDTMPSWS 492 (642)
Q Consensus 427 ~~~l~~~~~--~~~~~~~~SpDg~~l~~~~~~---------~g~~~l~~~d~~~g~~~~~~~~l~---~~~~~~~~~~~s 492 (642)
.+.+..+.. ..+...+|||||+.++..+.. .....|.+||..+|+. +..+. ...........+
T Consensus 216 l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~---l~v~~~~~p~Gh~~~~lsg~ 292 (356)
T 2w18_A 216 LKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS---VGVMLYCLPPGQAGRFLEGD 292 (356)
T ss_dssp EEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEE---EEEEEECCCTTCCCCEEEEE
T ss_pred EEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE---EEEEEeeccCCCcceeEccc
Confidence 566654330 123345899999988654421 2345888899998875 33221 111111122233
Q ss_pred cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
.+|..++..+.++. |.+||+.+++...... ++.. .....++|||||++|+..+.++
T Consensus 293 ~sg~~lASgS~DgT--------IkIWDl~tGk~l~tL~-gH~~------~vvs~vafSPDG~~LaSGS~D~ 348 (356)
T 2w18_A 293 VKDHCAAAILTSGT--------IAIWDLLLGQCTALLP-PVSD------QHWSFVKWSGTDSHLLAGQKDG 348 (356)
T ss_dssp EETTEEEEEETTSC--------EEEEETTTCSEEEEEC-CC--------CCCCEEEECSSSSEEEEECTTS
T ss_pred cCCCEEEEEcCCCc--------EEEEECCCCcEEEEec-CCCC------CeEEEEEECCCCCEEEEEECCC
Confidence 34666776666654 9999999988655433 2222 0223479999999998887665
No 196
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.25 E-value=5e-10 Score=110.65 Aligned_cols=226 Identities=10% Similarity=0.071 Sum_probs=143.0
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecC
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD 413 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 413 (642)
.+.|+|+++.|+++.. ....|++++.++++...+.....+..+.++|||+ |++.. ...+. .++. +
T Consensus 17 gp~w~~~~~~l~~~d~--~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~-l~v~~--------~~~l~--~~d~--~ 81 (297)
T 3g4e_A 17 SPVWEEVSNSLLFVDI--PAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGG-YVATI--------GTKFC--ALNW--K 81 (297)
T ss_dssp EEEEETTTTEEEEEET--TTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSS-EEEEE--------TTEEE--EEET--T
T ss_pred CCeEECCCCEEEEEEC--CCCEEEEEECCCCcEEEEeCCCceEEEEECCCCC-EEEEE--------CCeEE--EEEC--C
Confidence 6799998888888763 3568999999988765554466788899999999 55544 23444 4443 2
Q ss_pred CCCCCCCCccccceEEccccC----CCCccCcEECCCCCeEEEEeCC---------CCceeEEEEECCCCccccceeeCC
Q 039497 414 PSDDNNREEIPCDVKILTKEE----TGNNAFPSCSPDGKFLVFRSGR---------SGHKNLFVLDAVNGEFNGDIRQLT 480 (642)
Q Consensus 414 ~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~SpDg~~l~~~~~~---------~g~~~l~~~d~~~g~~~~~~~~l~ 480 (642)
++ ..+.+.... ......+.++|||+ |++.... .....||+++.+ |+. ..+.
T Consensus 82 -----~g-----~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~----~~~~ 145 (297)
T 3g4e_A 82 -----EQ-----SAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPD-HHV----KKYF 145 (297)
T ss_dssp -----TT-----EEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTT-SCE----EEEE
T ss_pred -----CC-----cEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECC-CCE----EEEe
Confidence 22 333333221 12345688999998 4454421 234589999876 553 4443
Q ss_pred CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeC--CCCceE---EeeecC-CCCCCCcccccccceEEcCCCC
Q 039497 481 DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKP--DGSGLR---RIHVAG-PEGSGDVDRERINHVCFSADGE 554 (642)
Q Consensus 481 ~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~--~~~~~~---~l~~~~-~~~~~~~~~~~~~~~~~S~Dg~ 554 (642)
........++|+|||+.|++...... .|+++++ .++... .+.... ..+ .+..++++++|+
T Consensus 146 ~~~~~pngi~~spdg~~lyv~~~~~~-------~i~~~~~d~~~G~~~~~~~~~~~~~~~~-------~p~g~~~d~~G~ 211 (297)
T 3g4e_A 146 DQVDISNGLDWSLDHKIFYYIDSLSY-------SVDAFDYDLQTGQISNRRSVYKLEKEEQ-------IPDGMCIDAEGK 211 (297)
T ss_dssp EEESBEEEEEECTTSCEEEEEEGGGT-------EEEEEEECTTTCCEEEEEEEEECCGGGC-------EEEEEEEBTTSC
T ss_pred eccccccceEEcCCCCEEEEecCCCC-------cEEEEeccCCCCcccCcEEEEECCCCCC-------CCCeeEECCCCC
Confidence 33234467899999999988876432 4888886 455432 222211 112 456789999996
Q ss_pred EEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEe-cCC-ceEEeecCCC
Q 039497 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWH-PGN-QLDLGKLRLE 621 (642)
Q Consensus 555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s-~dg-~~~~~~~~~~ 621 (642)
|+++...++ .|++++.++++ +..+........+++|+ ||+ .++++....+
T Consensus 212 -lwva~~~~~----------------~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~~ 264 (297)
T 3g4e_A 212 -LWVACYNGG----------------RVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARDG 264 (297)
T ss_dssp -EEEEEETTT----------------EEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCTT
T ss_pred -EEEEEcCCC----------------EEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCcC
Confidence 555544332 79999998555 45555444456789998 887 4567776554
No 197
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.23 E-value=2e-09 Score=106.14 Aligned_cols=220 Identities=13% Similarity=0.104 Sum_probs=140.2
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
..+.|+|+|+.|+++.. ....|++++.+++ .+.+.. ...+..+.++|||+. +++.. ....+.+|+...
T Consensus 31 eg~~~d~~g~~l~~~~~--~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l-~v~~~------~~~~i~~~d~~~- 99 (296)
T 3e5z_A 31 EGPVYVPARSAVIFSDV--RQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHL-IACSH------GLRRLERQREPG- 99 (296)
T ss_dssp EEEEEEGGGTEEEEEEG--GGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCE-EEEET------TTTEEEEECSTT-
T ss_pred cCCeEeCCCCEEEEEeC--CCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcE-EEEec------CCCeEEEEcCCC-
Confidence 46799999997777663 2468999999988 555444 455778999999984 44442 234555544322
Q ss_pred cCCCCCCCCCccccceEEcccc----CCCCccCcEECCCCCeEEEEeC---------------CCCceeEEEEECCCCcc
Q 039497 412 LDPSDDNNREEIPCDVKILTKE----ETGNNAFPSCSPDGKFLVFRSG---------------RSGHKNLFVLDAVNGEF 472 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~SpDg~~l~~~~~---------------~~g~~~l~~~d~~~g~~ 472 (642)
+ ....+... .......++++|||+.+ ++.. ..+...||.++.+ |+.
T Consensus 100 --------g-----~~~~~~~~~~~~~~~~~~~i~~d~~G~l~-vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~ 164 (296)
T 3e5z_A 100 --------G-----EWESIADSFEGKKLNSPNDVCLAPDGSLW-FSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL 164 (296)
T ss_dssp --------C-----CEEEEECEETTEECCCCCCEEECTTSCEE-EEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE
T ss_pred --------C-----cEEEEeeccCCCCCCCCCCEEECCCCCEE-EECCccccccccccccccccCCCcEEEEECCC-CCE
Confidence 2 33333211 11234568999999744 4321 1123489999987 663
Q ss_pred ccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC-CCce---EEeeecCCCCCCCcccccccceE
Q 039497 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD-GSGL---RRIHVAGPEGSGDVDRERINHVC 548 (642)
Q Consensus 473 ~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~-~~~~---~~l~~~~~~~~~~~~~~~~~~~~ 548 (642)
..+.........++|+|||+.| +..... ..|++++++ .+.. ..+. ....+ .+..++
T Consensus 165 ----~~~~~~~~~~~gi~~s~dg~~l-v~~~~~-------~~i~~~~~~~~g~~~~~~~~~-~~~~~-------~p~~i~ 224 (296)
T 3e5z_A 165 ----SAPIRDRVKPNGLAFLPSGNLL-VSDTGD-------NATHRYCLNARGETEYQGVHF-TVEPG-------KTDGLR 224 (296)
T ss_dssp ----EEEECCCSSEEEEEECTTSCEE-EEETTT-------TEEEEEEECSSSCEEEEEEEE-CCSSS-------CCCSEE
T ss_pred ----EEeecCCCCCccEEECCCCCEE-EEeCCC-------CeEEEEEECCCCcCcCCCeEe-eCCCC-------CCCeEE
Confidence 5555444455778999999988 665543 249999986 4444 2222 22222 456799
Q ss_pred EcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEE-ecCCce-EEeec
Q 039497 549 FSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW-HPGNQL-DLGKL 618 (642)
Q Consensus 549 ~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~-s~dg~~-~~~~~ 618 (642)
+++||+ |+++. .+ .|++|+.++.....+..... ...++| +||++. +++..
T Consensus 225 ~d~~G~-l~v~~-~~-----------------~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~ 276 (296)
T 3e5z_A 225 VDAGGL-IWASA-GD-----------------GVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVS 276 (296)
T ss_dssp EBTTSC-EEEEE-TT-----------------EEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEET
T ss_pred ECCCCC-EEEEc-CC-----------------eEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcC
Confidence 999998 44444 22 79999998776777766555 778899 588764 45543
No 198
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.21 E-value=9.8e-09 Score=101.14 Aligned_cols=244 Identities=13% Similarity=0.102 Sum_probs=144.0
Q ss_pred cceEeeCCe-EEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEE
Q 039497 195 WPTWSGDST-IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI 273 (642)
Q Consensus 195 ~~~wspdg~-~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~ 273 (642)
.++|+|+|. ++++. ..++ .|++++..++. ..+..+......++++|||+.++. ... ...|.+
T Consensus 32 g~~~d~~g~~l~~~~-~~~~--~i~~~~~~~~~---------~~~~~~~~~~~~l~~~~dg~l~v~-~~~----~~~i~~ 94 (296)
T 3e5z_A 32 GPVYVPARSAVIFSD-VRQN--RTWAWSDDGQL---------SPEMHPSHHQNGHCLNKQGHLIAC-SHG----LRRLER 94 (296)
T ss_dssp EEEEEGGGTEEEEEE-GGGT--EEEEEETTSCE---------EEEESSCSSEEEEEECTTCCEEEE-ETT----TTEEEE
T ss_pred CCeEeCCCCEEEEEe-CCCC--EEEEEECCCCe---------EEEECCCCCcceeeECCCCcEEEE-ecC----CCeEEE
Confidence 479999997 77776 3344 78889887751 333333334566788999985443 221 125666
Q ss_pred EEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEec----
Q 039497 274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHD---- 349 (642)
Q Consensus 274 ~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~---- 349 (642)
||.. +|+...+..... . ........+.++|+|+.++....
T Consensus 95 ~d~~--------------~g~~~~~~~~~~-----------------~-----~~~~~~~~i~~d~~G~l~vtd~~~g~~ 138 (296)
T 3e5z_A 95 QREP--------------GGEWESIADSFE-----------------G-----KKLNSPNDVCLAPDGSLWFSDPTYGID 138 (296)
T ss_dssp ECST--------------TCCEEEEECEET-----------------T-----EECCCCCCEEECTTSCEEEEECSHHHH
T ss_pred EcCC--------------CCcEEEEeeccC-----------------C-----CCCCCCCCEEECCCCCEEEECCccccc
Confidence 5541 232221110000 0 00011235688999984332110
Q ss_pred ----------CCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCC
Q 039497 350 ----------FELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDN 418 (642)
Q Consensus 350 ----------~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 418 (642)
......||.++.+ ++...+.. ......++|+|||+.| ++.. ....+.+|+++. +
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~------~~~~i~~~~~~~--~----- 203 (296)
T 3e5z_A 139 KPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLL-VSDT------GDNATHRYCLNA--R----- 203 (296)
T ss_dssp CGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEE-EEET------TTTEEEEEEECS--S-----
T ss_pred cccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEE-EEeC------CCCeEEEEEECC--C-----
Confidence 1123589999987 55444433 3456789999999988 6663 356777777753 1
Q ss_pred CCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeE-ecCCCE
Q 039497 419 NREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW-SPKGDL 497 (642)
Q Consensus 419 ~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~-spdG~~ 497 (642)
+. +....+.+ .........+++++||+ |+++. . ..|++++.+ |+. +..+..... ...++| +||++.
T Consensus 204 -g~-~~~~~~~~-~~~~~~p~~i~~d~~G~-l~v~~--~--~~v~~~~~~-g~~---~~~~~~~~~-~~~~~f~~~d~~~ 270 (296)
T 3e5z_A 204 -GE-TEYQGVHF-TVEPGKTDGLRVDAGGL-IWASA--G--DGVHVLTPD-GDE---LGRVLTPQT-TSNLCFGGPEGRT 270 (296)
T ss_dssp -SC-EEEEEEEE-CCSSSCCCSEEEBTTSC-EEEEE--T--TEEEEECTT-SCE---EEEEECSSC-CCEEEEESTTSCE
T ss_pred -Cc-CcCCCeEe-eCCCCCCCeEEECCCCC-EEEEc--C--CeEEEECCC-CCE---EEEEECCCC-ceeEEEECCCCCE
Confidence 20 00012233 22224556789999997 44444 2 379999987 554 455554444 677889 589999
Q ss_pred EEEEecCCCCCCCCceeEEEEeCCCCceEEe
Q 039497 498 IAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528 (642)
Q Consensus 498 l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 528 (642)
|+.++... ||+++++++++++.
T Consensus 271 L~v~t~~~---------l~~~~~~~~~~~~~ 292 (296)
T 3e5z_A 271 LYMTVSTE---------FWSIETNVRGLEHH 292 (296)
T ss_dssp EEEEETTE---------EEEEECSCCBCCC-
T ss_pred EEEEcCCe---------EEEEEccccccccc
Confidence 99887653 99999988776543
No 199
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.20 E-value=2.4e-09 Score=107.55 Aligned_cols=231 Identities=11% Similarity=0.088 Sum_probs=138.9
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
.+.|+|+|+ |++... ....|++++.++++.+.+.. ...+..+.|+|||+.+ ++... .......|+.++.
T Consensus 49 ~~~~~~~g~-l~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~-v~~~~----~~~~~~~i~~~d~- 119 (333)
T 2dg1_A 49 GLNFDRQGQ-LFLLDV--FEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLF-VCYLG----DFKSTGGIFAATE- 119 (333)
T ss_dssp EEEECTTSC-EEEEET--TTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEE-EEECT----TSSSCCEEEEECT-
T ss_pred CcEECCCCC-EEEEEC--CCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEE-EEeCC----CCCCCceEEEEeC-
Confidence 568999998 555442 24689999999888776653 4567889999999744 44321 0001124455544
Q ss_pred cCCCCCCCCCccccceE-Eccc-cCCCCccCcEECCCCCeEEEEeCC----CCceeEEEEECCCCccccceeeCCCCCCc
Q 039497 412 LDPSDDNNREEIPCDVK-ILTK-EETGNNAFPSCSPDGKFLVFRSGR----SGHKNLFVLDAVNGEFNGDIRQLTDGPWI 485 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~-~l~~-~~~~~~~~~~~SpDg~~l~~~~~~----~g~~~l~~~d~~~g~~~~~~~~l~~~~~~ 485 (642)
+ ++ ... .+.. ........+.++|||+.++ .... .....||+++.++++. ..+......
T Consensus 120 -~-----~~-----~~~~~~~~~~~~~~~~~i~~d~~g~l~v-~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~ 183 (333)
T 2dg1_A 120 -N-----GD-----NLQDIIEDLSTAYCIDDMVFDSKGGFYF-TDFRGYSTNPLGGVYYVSPDFRTV----TPIIQNISV 183 (333)
T ss_dssp -T-----SC-----SCEEEECSSSSCCCEEEEEECTTSCEEE-EECCCBTTBCCEEEEEECTTSCCE----EEEEEEESS
T ss_pred -C-----CC-----EEEEEEccCccCCcccceEECCCCCEEE-EeccccccCCCceEEEEeCCCCEE----EEeecCCCc
Confidence 2 22 222 2221 1113456789999997544 4432 1245899999887663 444332233
Q ss_pred ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC--CceEEee-----ecCCCCCCCcccccccceEEcCCCCEEEE
Q 039497 486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG--SGLRRIH-----VAGPEGSGDVDRERINHVCFSADGEWLLF 558 (642)
Q Consensus 486 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~--~~~~~l~-----~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~ 558 (642)
...++|+|||+.|++..... ..|+++++++ .....+. ...... .+..+.+++||+ |++
T Consensus 184 ~~~i~~~~dg~~l~v~~~~~-------~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~-------~~~~i~~d~~G~-l~v 248 (333)
T 2dg1_A 184 ANGIALSTDEKVLWVTETTA-------NRLHRIALEDDGVTIQPFGATIPYYFTGHE-------GPDSCCIDSDDN-LYV 248 (333)
T ss_dssp EEEEEECTTSSEEEEEEGGG-------TEEEEEEECTTSSSEEEEEEEEEEECCSSS-------EEEEEEEBTTCC-EEE
T ss_pred ccceEECCCCCEEEEEeCCC-------CeEEEEEecCCCcCcccccceEEEecCCCC-------CCCceEECCCCC-EEE
Confidence 56789999999888876532 2499999853 3332211 111011 346689999998 444
Q ss_pred EEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCC------CCCCcEEecCC-ceEEeecCC
Q 039497 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGY------ENGTPAWHPGN-QLDLGKLRL 620 (642)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~------~~~~~~~s~dg-~~~~~~~~~ 620 (642)
..... ..|++++.++.....+..... ....++|+||+ .++++..+.
T Consensus 249 ~~~~~----------------~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 249 AMYGQ----------------GRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEETT----------------TEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EEcCC----------------CEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 43221 279999987765666554322 46789999997 455665443
No 200
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.19 E-value=2.5e-09 Score=107.03 Aligned_cols=226 Identities=15% Similarity=0.143 Sum_probs=141.9
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (642)
..+.|+|+++.++++... ...|++++.++++.+.+.....+..+.|+|||+.++. .. .. |+.++.
T Consensus 52 egp~~~~~~~~l~~~d~~--~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~-~~--------~g--l~~~d~-- 116 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNIL--ERELHELHLASGRKTVHALPFMGSALAKISDSKQLIA-SD--------DG--LFLRDT-- 116 (326)
T ss_dssp EEEEEETTTTEEEEEEGG--GTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEE-ET--------TE--EEEEET--
T ss_pred cCCeEeCCCCEEEEEECC--CCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEE-EC--------CC--EEEEEC--
Confidence 367999998888887642 4689999999887665544566788899999985554 31 23 455544
Q ss_pred CCCCCCCCCccccceEEccccC----CCCccCcEECCCCCeEEEEeCC----CCceeEEEEECCCCccccceeeCCCCCC
Q 039497 413 DPSDDNNREEIPCDVKILTKEE----TGNNAFPSCSPDGKFLVFRSGR----SGHKNLFVLDAVNGEFNGDIRQLTDGPW 484 (642)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~SpDg~~l~~~~~~----~g~~~l~~~d~~~g~~~~~~~~l~~~~~ 484 (642)
+ ++ ..+.+.... ......+.++|||+.+ +.... .....||+++ +|+. +.+.....
T Consensus 117 ~-----~g-----~~~~~~~~~~~~~~~~~~~i~~d~~G~l~-v~~~~~~~~~~~~~l~~~~--~g~~----~~~~~~~~ 179 (326)
T 2ghs_A 117 A-----TG-----VLTLHAELESDLPGNRSNDGRMHPSGALW-IGTMGRKAETGAGSIYHVA--KGKV----TKLFADIS 179 (326)
T ss_dssp T-----TC-----CEEEEECSSTTCTTEEEEEEEECTTSCEE-EEEEETTCCTTCEEEEEEE--TTEE----EEEEEEES
T ss_pred C-----CC-----cEEEEeeCCCCCCCCCCCCEEECCCCCEE-EEeCCCcCCCCceEEEEEe--CCcE----EEeeCCCc
Confidence 2 23 333333211 0234568899999854 44321 1345899999 4663 44433223
Q ss_pred cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC--CC-ce---EEeeecC-CCCCCCcccccccceEEcCCCCEEE
Q 039497 485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD--GS-GL---RRIHVAG-PEGSGDVDRERINHVCFSADGEWLL 557 (642)
Q Consensus 485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~--~~-~~---~~l~~~~-~~~~~~~~~~~~~~~~~S~Dg~~l~ 557 (642)
....++|+|||+.|++..... ..|++++++ ++ .. +.+.... ... .+..+.++++|. |+
T Consensus 180 ~~~~i~~s~dg~~lyv~~~~~-------~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~-------~p~gi~~d~~G~-lw 244 (326)
T 2ghs_A 180 IPNSICFSPDGTTGYFVDTKV-------NRLMRVPLDARTGLPTGKAEVFIDSTGIKG-------GMDGSVCDAEGH-IW 244 (326)
T ss_dssp SEEEEEECTTSCEEEEEETTT-------CEEEEEEBCTTTCCBSSCCEEEEECTTSSS-------EEEEEEECTTSC-EE
T ss_pred ccCCeEEcCCCCEEEEEECCC-------CEEEEEEcccccCCcccCceEEEECCCCCC-------CCCeeEECCCCC-EE
Confidence 345789999999998886543 349999986 55 32 2232211 112 345788999997 44
Q ss_pred EEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEe-cCCc-eEEeecCCC
Q 039497 558 FTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWH-PGNQ-LDLGKLRLE 621 (642)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s-~dg~-~~~~~~~~~ 621 (642)
+..... ..|++++.++.....+......+..++|+ +|++ ++++....+
T Consensus 245 va~~~~----------------~~v~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 245 NARWGE----------------GAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp EEEETT----------------TEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred EEEeCC----------------CEEEEECCCCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCCC
Confidence 443222 27999998766566665544456788998 8875 456655544
No 201
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.18 E-value=2.2e-09 Score=106.40 Aligned_cols=226 Identities=15% Similarity=0.176 Sum_probs=139.4
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
..+.|+|+|+.|++... ....|++++.++ +...+.. ......+.+++||+ |+++... ... |+.++.
T Consensus 48 egp~~~~~g~~l~~~d~--~~~~i~~~~~~g-~~~~~~~~~~~~~gl~~d~dG~-l~v~~~~------~~~--v~~~~~- 114 (305)
T 3dr2_A 48 EGPAWWEAQRTLVWSDL--VGRRVLGWREDG-TVDVLLDATAFTNGNAVDAQQR-LVHCEHG------RRA--ITRSDA- 114 (305)
T ss_dssp EEEEEEGGGTEEEEEET--TTTEEEEEETTS-CEEEEEESCSCEEEEEECTTSC-EEEEETT------TTE--EEEECT-
T ss_pred cCCeEeCCCCEEEEEEC--CCCEEEEEeCCC-CEEEEeCCCCccceeeECCCCC-EEEEECC------CCE--EEEECC-
Confidence 36799999998888764 346788899854 4444443 55677899999998 5555421 233 334433
Q ss_pred cCCCCCCCCCccccceEEccccC----CCCccCcEECCCCCeEEEEeC---------------CCCceeEEEEECCCCcc
Q 039497 412 LDPSDDNNREEIPCDVKILTKEE----TGNNAFPSCSPDGKFLVFRSG---------------RSGHKNLFVLDAVNGEF 472 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~SpDg~~l~~~~~---------------~~g~~~l~~~d~~~g~~ 472 (642)
+ + ..+.+.... ......++++|||+ |+++.. ..+...||+++.++|+.
T Consensus 115 -~------g-----~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~ 181 (305)
T 3dr2_A 115 -D------G-----QAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL 181 (305)
T ss_dssp -T------S-----CEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC
T ss_pred -C------C-----CEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE
Confidence 1 2 233332111 12345689999997 445321 01235899999988874
Q ss_pred ccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE--EeeecCCCCCCCcccccccceEEc
Q 039497 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR--RIHVAGPEGSGDVDRERINHVCFS 550 (642)
Q Consensus 473 ~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~S 550 (642)
+.+. .......++|+|||+.|++...... ......|++++++++... .+......+ .+..+.++
T Consensus 182 ----~~~~-~~~~p~gl~~spdg~~lyv~~~~~~--~~~~~~i~~~~~~~~~l~~~~~~~~~~~~-------~pdgi~~d 247 (305)
T 3dr2_A 182 ----QRMA-DLDHPNGLAFSPDEQTLYVSQTPEQ--GHGSVEITAFAWRDGALHDRRHFASVPDG-------LPDGFCVD 247 (305)
T ss_dssp ----EEEE-EESSEEEEEECTTSSEEEEEECCC-----CCCEEEEEEEETTEEEEEEEEECCSSS-------CCCSEEEC
T ss_pred ----EEEe-cCCCCcceEEcCCCCEEEEEecCCc--CCCCCEEEEEEecCCCccCCeEEEECCCC-------CCCeEEEC
Confidence 5544 3334467899999999988876421 001246999998765421 111111112 34568999
Q ss_pred CCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCc-eEEeec
Q 039497 551 ADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQ-LDLGKL 618 (642)
Q Consensus 551 ~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~-~~~~~~ 618 (642)
++|+ |++.. .+ .|++++.++..+..+.... ....++|++|++ ++++..
T Consensus 248 ~~G~-lwv~~-~~-----------------gv~~~~~~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 248 RGGW-LWSSS-GT-----------------GVCVFDSDGQLLGHIPTPG-TASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp TTSC-EEECC-SS-----------------EEEEECTTSCEEEEEECSS-CCCEEEECTTSCEEEEEET
T ss_pred CCCC-EEEec-CC-----------------cEEEECCCCCEEEEEECCC-ceeEEEEeCCCCEEEEEcC
Confidence 9998 55444 21 6999999887777666544 467889999885 445543
No 202
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.17 E-value=5.7e-09 Score=104.73 Aligned_cols=250 Identities=15% Similarity=0.077 Sum_probs=143.4
Q ss_pred cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeC-CCCCccccceeecCCcEEEEEEeccCCceeeEEE
Q 039497 195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVT-PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI 273 (642)
Q Consensus 195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~ 273 (642)
.++|++||+++++. ..++ .|++++..++ ....+. .....+..++++|||+.++. ..........|++
T Consensus 49 ~~~~~~~g~l~~~~-~~~~--~i~~~d~~~~--------~~~~~~~~~~~~~~~i~~~~dg~l~v~-~~~~~~~~~~i~~ 116 (333)
T 2dg1_A 49 GLNFDRQGQLFLLD-VFEG--NIFKINPETK--------EIKRPFVSHKANPAAIKIHKDGRLFVC-YLGDFKSTGGIFA 116 (333)
T ss_dssp EEEECTTSCEEEEE-TTTC--EEEEECTTTC--------CEEEEEECSSSSEEEEEECTTSCEEEE-ECTTSSSCCEEEE
T ss_pred CcEECCCCCEEEEE-CCCC--EEEEEeCCCC--------cEEEEeeCCCCCcceEEECCCCcEEEE-eCCCCCCCceEEE
Confidence 47999999987776 3344 8999998887 444443 33445667888999985444 2221111125555
Q ss_pred EEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecC---
Q 039497 274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDF--- 350 (642)
Q Consensus 274 ~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~--- 350 (642)
+|... ..+.. .+... ... .....+.++|+|+. ++....
T Consensus 117 ~d~~~---------------~~~~~---------------~~~~~-~~~-------~~~~~i~~d~~g~l-~v~~~~~~~ 157 (333)
T 2dg1_A 117 ATENG---------------DNLQD---------------IIEDL-STA-------YCIDDMVFDSKGGF-YFTDFRGYS 157 (333)
T ss_dssp ECTTS---------------CSCEE---------------EECSS-SSC-------CCEEEEEECTTSCE-EEEECCCBT
T ss_pred EeCCC---------------CEEEE---------------EEccC-ccC-------CcccceEECCCCCE-EEEeccccc
Confidence 55411 10000 00000 000 00124578999974 443321
Q ss_pred -CCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceE
Q 039497 351 -ELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVK 428 (642)
Q Consensus 351 -~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 428 (642)
.....|++++.++++...+.. ......+.|+|||+.|+++.. ....+.+|++.. + +. ...
T Consensus 158 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~------~~~~i~~~d~~~--~------g~----~~~ 219 (333)
T 2dg1_A 158 TNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTET------TANRLHRIALED--D------GV----TIQ 219 (333)
T ss_dssp TBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEG------GGTEEEEEEECT--T------SS----SEE
T ss_pred cCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeC------CCCeEEEEEecC--C------Cc----Ccc
Confidence 124689999988777665543 345678899999998888763 245677776643 1 21 111
Q ss_pred E-----ccccC-CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC------cccceeEecCCC
Q 039497 429 I-----LTKEE-TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW------IDTMPSWSPKGD 496 (642)
Q Consensus 429 ~-----l~~~~-~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~------~~~~~~~spdG~ 496 (642)
. ..... ......+.+++||+.++... +...|++++.+ ++. +..+..... ....++|+|||+
T Consensus 220 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~---~~~~v~~~d~~-g~~---~~~~~~~~~~~g~~~~~~~~~~~~dg~ 292 (333)
T 2dg1_A 220 PFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY---GQGRVLVFNKR-GYP---IGQILIPGRDEGHMLRSTHPQFIPGTN 292 (333)
T ss_dssp EEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE---TTTEEEEECTT-SCE---EEEEECTTGGGTCSCBCCEEEECTTSC
T ss_pred cccceEEEecCCCCCCCceEECCCCCEEEEEc---CCCEEEEECCC-CCE---EEEEEcCCCccccccCcceEEECCCCC
Confidence 1 11111 02445689999997544333 22379999985 543 344433221 356789999999
Q ss_pred EEEEEecCCCCCCCCceeEEEEeCCC
Q 039497 497 LIAFSSNRHNPDNVEAFSLYVIKPDG 522 (642)
Q Consensus 497 ~l~~~~~~~~~~~~~~~~l~~~d~~~ 522 (642)
.|++....+. ......||.+++..
T Consensus 293 ~L~v~~~~g~--~~~~~~l~~~~~~~ 316 (333)
T 2dg1_A 293 QLIICSNDIE--MGGGSMLYTVNGFA 316 (333)
T ss_dssp EEEEEEECGG--GTCCEEEEEEECSS
T ss_pred EEEEEeCccC--CCCCceEEEEeccc
Confidence 8988876532 11345688888754
No 203
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.15 E-value=9.4e-09 Score=101.81 Aligned_cols=189 Identities=15% Similarity=0.119 Sum_probs=114.7
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee------cCCceeeeeecCCCEEEEEEcC---------CCccc
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK------DRTAFYNSWSPTEKHVIYTSTG---------PIFQS 398 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~------~~~~~~~~~spdg~~l~~~~~~---------~~~~~ 398 (642)
.+.++++|+.++. . .+...|++++.+ ++.+.+.. ...+..+.++|||+ |+++... .....
T Consensus 90 gl~~d~dG~l~v~-~--~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~ 164 (305)
T 3dr2_A 90 GNAVDAQQRLVHC-E--HGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADP 164 (305)
T ss_dssp EEEECTTSCEEEE-E--TTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCC
T ss_pred eeeECCCCCEEEE-E--CCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCcccccccccccc
Confidence 4578999985444 2 234679999987 45454433 12356789999998 5553210 00001
Q ss_pred CCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCC---CceeEEEEECCCCccccc
Q 039497 399 ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRS---GHKNLFVLDAVNGEFNGD 475 (642)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~---g~~~l~~~d~~~g~~~~~ 475 (642)
......||.++. + ++ +...+. .. .....++|+|||+.|++..... +...|+++++.++.. ..
T Consensus 165 ~~~~~~v~~~d~--~-----~g-----~~~~~~-~~-~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l-~~ 229 (305)
T 3dr2_A 165 ELAHHSVYRLPP--D-----GS-----PLQRMA-DL-DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL-HD 229 (305)
T ss_dssp SSSCEEEEEECS--S-----SC-----CCEEEE-EE-SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE-EE
T ss_pred ccCCCeEEEEcC--C-----CC-----cEEEEe-cC-CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc-cC
Confidence 122456787765 2 23 344444 32 4456789999999998876532 125799999875431 00
Q ss_pred eeeC-CCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCC
Q 039497 476 IRQL-TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554 (642)
Q Consensus 476 ~~~l-~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~ 554 (642)
.+.+ .........+.++++|+ |++.... .|++++.++.....+.... .+..++|++|++
T Consensus 230 ~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~---------gv~~~~~~g~~~~~~~~~~----------~~~~~~f~~d~~ 289 (305)
T 3dr2_A 230 RRHFASVPDGLPDGFCVDRGGW-LWSSSGT---------GVCVFDSDGQLLGHIPTPG----------TASNCTFDQAQQ 289 (305)
T ss_dssp EEEEECCSSSCCCSEEECTTSC-EEECCSS---------EEEEECTTSCEEEEEECSS----------CCCEEEECTTSC
T ss_pred CeEEEECCCCCCCeEEECCCCC-EEEecCC---------cEEEECCCCCEEEEEECCC----------ceeEEEEeCCCC
Confidence 1222 11223345679999998 5555422 2999999776666655322 246789999999
Q ss_pred EEEEEEec
Q 039497 555 WLLFTANL 562 (642)
Q Consensus 555 ~l~~~~~~ 562 (642)
.|++++..
T Consensus 290 ~L~it~~~ 297 (305)
T 3dr2_A 290 RLFITGGP 297 (305)
T ss_dssp EEEEEETT
T ss_pred EEEEEcCC
Confidence 99988753
No 204
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.14 E-value=7.7e-09 Score=102.03 Aligned_cols=192 Identities=12% Similarity=0.053 Sum_probs=119.1
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeec------CCceeeeeecCCCEEEEEEcCCCc---ccCCCeEE
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD------RTAFYNSWSPTEKHVIYTSTGPIF---QSERATVQ 404 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~------~~~~~~~~spdg~~l~~~~~~~~~---~~~~~~~~ 404 (642)
.+.+++||+ +++.. ...|++++.++++.+.+... .....+.++|||+ |++....... ........
T Consensus 58 ~i~~~~dG~-l~v~~----~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~ 131 (297)
T 3g4e_A 58 SVALRQSGG-YVATI----GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGA 131 (297)
T ss_dssp EEEEBTTSS-EEEEE----TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEE
T ss_pred EEEECCCCC-EEEEE----CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcE
Confidence 567899999 44433 25899999998876666541 2356789999998 5554421100 01124567
Q ss_pred EEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEEC--CCCcccccee---eC
Q 039497 405 IARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA--VNGEFNGDIR---QL 479 (642)
Q Consensus 405 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~--~~g~~~~~~~---~l 479 (642)
||.++. .+ ....+.... .....++|+|||+.|+++.... ..|+++++ .+|.. ...+ .+
T Consensus 132 l~~~d~--------~g-----~~~~~~~~~-~~pngi~~spdg~~lyv~~~~~--~~i~~~~~d~~~G~~-~~~~~~~~~ 194 (297)
T 3g4e_A 132 LYSLFP--------DH-----HVKKYFDQV-DISNGLDWSLDHKIFYYIDSLS--YSVDAFDYDLQTGQI-SNRRSVYKL 194 (297)
T ss_dssp EEEECT--------TS-----CEEEEEEEE-SBEEEEEECTTSCEEEEEEGGG--TEEEEEEECTTTCCE-EEEEEEEEC
T ss_pred EEEEEC--------CC-----CEEEEeecc-ccccceEEcCCCCEEEEecCCC--CcEEEEeccCCCCcc-cCcEEEEEC
Confidence 888866 23 333333322 3456789999999998877533 37888876 45652 0011 12
Q ss_pred CCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEc-CCCCEEEE
Q 039497 480 TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS-ADGEWLLF 558 (642)
Q Consensus 480 ~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S-~Dg~~l~~ 558 (642)
.........++++++|+ |+++..... .|+++|.++++........ .. .+..++|+ ||++.|++
T Consensus 195 ~~~~~~p~g~~~d~~G~-lwva~~~~~-------~v~~~d~~tG~~~~~i~~p-~~-------~~t~~~f~g~d~~~L~v 258 (297)
T 3g4e_A 195 EKEEQIPDGMCIDAEGK-LWVACYNGG-------RVIRLDPVTGKRLQTVKLP-VD-------KTTSCCFGGKNYSEMYV 258 (297)
T ss_dssp CGGGCEEEEEEEBTTSC-EEEEEETTT-------EEEEECTTTCCEEEEEECS-SS-------BEEEEEEESGGGCEEEE
T ss_pred CCCCCCCCeeEECCCCC-EEEEEcCCC-------EEEEEcCCCceEEEEEECC-CC-------CceEEEEeCCCCCEEEE
Confidence 22223345678999996 555544332 3999999866654433322 12 46789998 99999999
Q ss_pred EEecCC
Q 039497 559 TANLGA 564 (642)
Q Consensus 559 ~~~~~~ 564 (642)
++...+
T Consensus 259 t~~~~~ 264 (297)
T 3g4e_A 259 TCARDG 264 (297)
T ss_dssp EEBCTT
T ss_pred EcCCcC
Confidence 987654
No 205
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.12 E-value=9.8e-08 Score=92.39 Aligned_cols=220 Identities=12% Similarity=0.053 Sum_probs=142.2
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
..+.|+++++.|++... ....|++++++++....+.. ......++++|+++.|+++.. .... |+.++.
T Consensus 39 ~gi~~d~~~~~ly~~d~--~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~------~~~~--I~~~~~ 108 (267)
T 1npe_A 39 IGLAFDCVDKVVYWTDI--SEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS------QLDR--IEVAKM 108 (267)
T ss_dssp EEEEEETTTTEEEEEET--TTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET------TTTE--EEEEET
T ss_pred EEEEEecCCCEEEEEEC--CCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEEC------CCCE--EEEEEc
Confidence 35689998888888763 45689999998877555543 246778899999998988873 2344 444444
Q ss_pred ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-CCCCcccce
Q 039497 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMP 489 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-~~~~~~~~~ 489 (642)
+ +. ..+.+..........++++|++.+|+++........|+++++++.. .+.+. ........+
T Consensus 109 --~-----g~-----~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~----~~~~~~~~~~~P~gi 172 (267)
T 1npe_A 109 --D-----GT-----QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN----RRILAQDNLGLPNGL 172 (267)
T ss_dssp --T-----SC-----SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC----CEEEECTTCSCEEEE
T ss_pred --C-----CC-----CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC----cEEEEECCCCCCcEE
Confidence 3 11 2222322111345678999988888888753224589999987433 23332 222344667
Q ss_pred eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCC
Q 039497 490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEP 569 (642)
Q Consensus 490 ~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~ 569 (642)
+++|++++||++..... .|+++++++...+.+.. ... .+..+ ..|+..|+++....+
T Consensus 173 a~d~~~~~lyv~d~~~~-------~I~~~~~~g~~~~~~~~-~~~--------~P~gi--~~d~~~lyva~~~~~----- 229 (267)
T 1npe_A 173 TFDAFSSQLCWVDAGTH-------RAECLNPAQPGRRKVLE-GLQ--------YPFAV--TSYGKNLYYTDWKTN----- 229 (267)
T ss_dssp EEETTTTEEEEEETTTT-------EEEEEETTEEEEEEEEE-CCC--------SEEEE--EEETTEEEEEETTTT-----
T ss_pred EEcCCCCEEEEEECCCC-------EEEEEecCCCceEEEec-CCC--------CceEE--EEeCCEEEEEECCCC-----
Confidence 99999999998887543 59999998765555443 211 22334 456788888765432
Q ss_pred CCCCCCCCCCCcEEEEEcCCCc-eeeccCCC-CCCCCcEEecCCc
Q 039497 570 VSWPNQFQPYGDLYVVKLDGSG-LRRLTWNG-YENGTPAWHPGNQ 612 (642)
Q Consensus 570 ~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~-~~~~~~~~s~dg~ 612 (642)
.|++++.++++ +..+.... .....++++||+-
T Consensus 230 -----------~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 230 -----------SVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp -----------EEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred -----------eEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 89999998665 45554432 2356778888763
No 206
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.11 E-value=2e-08 Score=98.38 Aligned_cols=178 Identities=12% Similarity=0.058 Sum_probs=109.0
Q ss_pred CCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECC---CCCeEEEEeCCCCceeEEEEECCCCccccc
Q 039497 399 ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSP---DGKFLVFRSGRSGHKNLFVLDAVNGEFNGD 475 (642)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp---Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~ 475 (642)
.+..+++|.+.. + ++ ....+..+. ..+..++||| |+..|+-.+. +..|.+||+++|+.
T Consensus 155 ~d~~V~~~~~s~--d-----G~-----~~~s~~~~~-~~v~~l~fs~~~g~~~~LaSgS~---D~TIkIWDl~TGk~--- 215 (356)
T 2w18_A 155 SDQQVEVMTFAE--D-----GG-----GKENQFLMP-PEETILTFAEVQGMQEALLGTTI---MNNIVIWNLKTGQL--- 215 (356)
T ss_dssp TTCEEEEEEECT--T-----SC-----EEEEEEECC-CSSCEEEEEEEETSTTEEEEEET---TSEEEEEETTTCCE---
T ss_pred CCCcEEEEEECC--C-----Cc-----eeeeeccCC-CceeeEEeeccCCCCceEEEecC---CCcEEEEECCCCcE---
Confidence 478889999865 3 22 333444444 4566778888 7788887773 34899999999986
Q ss_pred eeeCCCCCC---cccceeEecCCCEEEEEecCCCC----CCCCceeEEEEeCCCCceEEeee----cCCCCCCCcccccc
Q 039497 476 IRQLTDGPW---IDTMPSWSPKGDLIAFSSNRHNP----DNVEAFSLYVIKPDGSGLRRIHV----AGPEGSGDVDRERI 544 (642)
Q Consensus 476 ~~~l~~~~~---~~~~~~~spdG~~l~~~~~~~~~----~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~~~~~~ 544 (642)
++.+..+.. .+...+|||||+.++..+..... -......|.+||+.+++...+.. .++.+ .
T Consensus 216 l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~-------~- 287 (356)
T 2w18_A 216 LKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG-------R- 287 (356)
T ss_dssp EEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCC-------C-
T ss_pred EEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc-------e-
Confidence 677754322 33445899999988765432100 00134568889998886544321 12222 1
Q ss_pred cceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCC-CcEEecCCceEEeecCCC
Q 039497 545 NHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENG-TPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 545 ~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~-~~~~s~dg~~~~~~~~~~ 621 (642)
.+..+.+|..++..+.++ .|.+||+..++ +..|..+...+. .++|||||+++++....+
T Consensus 288 -~lsg~~sg~~lASgS~Dg-----------------TIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~ 348 (356)
T 2w18_A 288 -FLEGDVKDHCAAAILTSG-----------------TIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDG 348 (356)
T ss_dssp -EEEEEEETTEEEEEETTS-----------------CEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTS
T ss_pred -eEccccCCCEEEEEcCCC-----------------cEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCC
Confidence 122233366666555543 68888998877 455665544444 479999999998875443
No 207
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.10 E-value=2.3e-08 Score=103.18 Aligned_cols=233 Identities=10% Similarity=0.016 Sum_probs=143.0
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeec-CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD-RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (642)
.++|+++|+ |++.. .....|++++++++....+... .... ++|+|+++.|+++.. .....|+.++.
T Consensus 135 ~la~d~~g~-lyv~d--~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~-------~~~~~I~~~d~-- 201 (409)
T 3hrp_A 135 GIAAVGNNT-VLAYQ--RDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGW-------EGTHTVYVYMK-- 201 (409)
T ss_dssp EEEECSTTE-EEEEE--TTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBS-------STTCEEEEEEG--
T ss_pred EEEEeCCCC-EEEEe--cCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEec-------CCCceEEEEEc--
Confidence 457899997 55544 2456899999998887766552 3334 999999998887763 22225666655
Q ss_pred CCCCCCCCCccccceEEc---cc-cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC----CCC-C
Q 039497 413 DPSDDNNREEIPCDVKIL---TK-EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL----TDG-P 483 (642)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l---~~-~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l----~~~-~ 483 (642)
+ ++. ....+ .. .. .....++++|++..|++.. . ...|++++.+++.. ..+ ... .
T Consensus 202 ~-----~~~----~~~~~g~~~~~~~-~~p~~iav~p~~g~lyv~d-~--~~~I~~~d~~~~~~----~~~~~~~~~g~~ 264 (409)
T 3hrp_A 202 A-----SGW----APTRIGQLGSTFS-GKIGAVALDETEEWLYFVD-S--NKNFGRFNVKTQEV----TLIKQLELSGSL 264 (409)
T ss_dssp G-----GTT----CEEEEEECCTTSC-SCCCBCEECTTSSEEEEEC-T--TCEEEEEETTTCCE----EEEEECCCCSCC
T ss_pred C-----CCc----eeEEeeeccchhc-CCcEEEEEeCCCCeEEEEE-C--CCcEEEEECCCCCE----EEEecccccCCC
Confidence 2 111 22233 11 22 4566789999767787743 3 34899999987763 333 221 1
Q ss_pred Ccc-c-ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-CCCCCC-----cccccccceEEcCCCCE
Q 039497 484 WID-T-MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEGSGD-----VDRERINHVCFSADGEW 555 (642)
Q Consensus 484 ~~~-~-~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~-----~~~~~~~~~~~S~Dg~~ 555 (642)
... . .++|+|++..||+..... ..|++++.++. ...+.-.. ..+... .....+..+++++||+
T Consensus 265 ~~~P~~~ia~~p~~g~lyv~d~~~-------~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~- 335 (409)
T 3hrp_A 265 GTNPGPYLIYYFVDSNFYMSDQNL-------SSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN- 335 (409)
T ss_dssp CCSSCCEEEEETTTTEEEEEETTT-------TEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-
T ss_pred CCCccccEEEeCCCCEEEEEeCCC-------CEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-
Confidence 222 2 789999877888876544 35999998865 33332211 001000 0011356789999998
Q ss_pred EEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCC---------------CCCCCcEEecCCceEEeecCC
Q 039497 556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNG---------------YENGTPAWHPGNQLDLGKLRL 620 (642)
Q Consensus 556 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~---------------~~~~~~~~s~dg~~~~~~~~~ 620 (642)
||++....+ ..|+++++..+.+..+.... .....++++++|.+|++....
T Consensus 336 lyvad~~~~---------------~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n 400 (409)
T 3hrp_A 336 FYIVDGFKG---------------YCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWG 400 (409)
T ss_dssp EEEEETTTT---------------CEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTT
T ss_pred EEEEeCCCC---------------CEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCC
Confidence 666654122 28999996666666554331 123467899999888876543
No 208
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.09 E-value=1.3e-08 Score=106.50 Aligned_cols=294 Identities=10% Similarity=-0.006 Sum_probs=162.1
Q ss_pred cceEee-----CCeEEEEEecCCCceEEEEEecCCCcccccCCccce--eeCCCCCcccccee-e-cCCcEEEEEEecc-
Q 039497 195 WPTWSG-----DSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPT--RVTPPGVHCFTPAA-F-HDGKRLAVATRRK- 264 (642)
Q Consensus 195 ~~~wsp-----dg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~-S-pdG~~l~~~~~~~- 264 (642)
.|..|. ||+.+|+....++ .|.++++++.+ ... .+.. +.....+++ + |||++++...+..
T Consensus 89 h~~~s~t~g~~DG~~lfVnd~~~~--rVavIdl~t~~-------~~~ii~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~ 158 (595)
T 1fwx_A 89 HVHMSFTEGKYDGRFLFMNDKANT--RVARVRCDVMK-------CDAILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDET 158 (595)
T ss_dssp CEEEEEETTEEEEEEEEEEETTTT--EEEEEETTTTE-------EEEEEECSS-CCSEEEEEECCSSBCSEEEEEECSCE
T ss_pred ccccCCCCCCcCCCEEEEEcCCCC--EEEEEECCCce-------EeeEEeCCC-CCCCcceeeeecCCCcEEEEeccccc
Confidence 356665 8888888643333 78889988862 222 2222 223444555 5 9999987764211
Q ss_pred ------------CCceeeEEEEEeecC-------CCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCC-ce
Q 039497 265 ------------NRNFRHIEIYDLTLN-------PNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPV-KE 324 (642)
Q Consensus 265 ------------~~~~~~i~~~d~~~~-------~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 324 (642)
......+.+.|..+. -.........+|||++++......+.. .++....... ..
T Consensus 159 p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~------~~i~~~~~~~~d~ 232 (595)
T 1fwx_A 159 PLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKG------MTLPEMTAAEMDH 232 (595)
T ss_dssp ESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCC------SSHHHHTCCSEEE
T ss_pred ccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccC------cchhhccccccce
Confidence 123345666666211 112345678999999998887654421 0111111111 11
Q ss_pred eEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCC--CCe--eEEeecCCceeeeeecCCCEEEEEEcCCCcccCC
Q 039497 325 LRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG--SKR--WTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSER 400 (642)
Q Consensus 325 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~--~~~--~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 400 (642)
+..... .....+.++|++... +.+.++|... +.. ..+........+.+||||++++.... ..
T Consensus 233 v~V~~~-~~~~~~v~~Gk~~~i-------~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~------~s 298 (595)
T 1fwx_A 233 IVVFNI-AEIEKAIAAGDYQEL-------NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGK------LS 298 (595)
T ss_dssp EEEEEH-HHHHHHHHHTCSEEE-------TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECT------TS
T ss_pred EEEeec-cceeEeccCCCeeEE-------CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCC------CC
Confidence 111111 011234677875443 3488899887 433 23444667889999999999988874 46
Q ss_pred CeEEEEEEEeec---CCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC--------
Q 039497 401 ATVQIARVSFQL---DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN-------- 469 (642)
Q Consensus 401 ~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~-------- 469 (642)
..+.++++.... +++..+.. . ....+..+ ....+.+|+||| +++.+..-+ .+|.+||+++
T Consensus 299 ~~VsVid~~~~~~~~~~~l~~~~-~---v~~~v~vG--~gP~h~aF~~dG-~aY~t~~ld--sqV~kwdi~~a~~~~~g~ 369 (595)
T 1fwx_A 299 PTVTVLDVTRFDAVFYENADPRS-A---VVAEPELG--LGPLHTAFDGRG-NAYTSLFLD--SQVVKWNIEDAIRAYAGE 369 (595)
T ss_dssp SBEEEEEGGGHHHHHHSCCCGGG-G---EEECCBCC--SCEEEEEECTTS-EEEEEETTT--TEEEEEEHHHHHHHHHTC
T ss_pred CeEEEEECcccccccccccCccc-c---eEEEcCCC--CCcceEEECCCC-eEEEEEecC--CcEEEEEhhHhhhhhccc
Confidence 778887775310 00000000 0 11122222 356788999999 665555433 4788899876
Q ss_pred --CccccceeeCCCCCCc-----ccceeEecCCCEEEEEecCCCCCC-----CCceeEEEEeCCCCceEEeee
Q 039497 470 --GEFNGDIRQLTDGPWI-----DTMPSWSPKGDLIAFSSNRHNPDN-----VEAFSLYVIKPDGSGLRRIHV 530 (642)
Q Consensus 470 --g~~~~~~~~l~~~~~~-----~~~~~~spdG~~l~~~~~~~~~~~-----~~~~~l~~~d~~~~~~~~l~~ 530 (642)
.+. +..+.-+... ......+|||++|+.......... -....--++|+++++.+.+..
T Consensus 370 ~~~~v---i~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv~d 439 (595)
T 1fwx_A 370 KVDPI---KDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHD 439 (595)
T ss_dssp SCCCE---EEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEE
T ss_pred cccee---EEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEEEE
Confidence 222 3334333211 123367899999988876542110 011122668888888777654
No 209
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.07 E-value=2.5e-08 Score=99.74 Aligned_cols=189 Identities=15% Similarity=0.059 Sum_probs=115.2
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeec------CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD------RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR 407 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~------~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~ 407 (642)
.+.|+|||+.++.. . ..|++++.++++...+... ..+..+.++|+|+ +++...... .......||.
T Consensus 94 ~i~~~~dg~l~v~~-~----~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~--~~~~~~~l~~ 165 (326)
T 2ghs_A 94 ALAKISDSKQLIAS-D----DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRK--AETGAGSIYH 165 (326)
T ss_dssp EEEEEETTEEEEEE-T----TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETT--CCTTCEEEEE
T ss_pred EEEEeCCCeEEEEE-C----CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCc--CCCCceEEEE
Confidence 45789999865543 2 3599999988887666431 1356789999998 444442100 0123456676
Q ss_pred EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC--CC-cccc--ceeeCCCC
Q 039497 408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV--NG-EFNG--DIRQLTDG 482 (642)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~--~g-~~~~--~~~~l~~~ 482 (642)
++. + ....+.... .....++|+|||+.|++.... ...|++++.+ +| +... ....+...
T Consensus 166 ~~~---------g-----~~~~~~~~~-~~~~~i~~s~dg~~lyv~~~~--~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~ 228 (326)
T 2ghs_A 166 VAK---------G-----KVTKLFADI-SIPNSICFSPDGTTGYFVDTK--VNRLMRVPLDARTGLPTGKAEVFIDSTGI 228 (326)
T ss_dssp EET---------T-----EEEEEEEEE-SSEEEEEECTTSCEEEEEETT--TCEEEEEEBCTTTCCBSSCCEEEEECTTS
T ss_pred EeC---------C-----cEEEeeCCC-cccCCeEEcCCCCEEEEEECC--CCEEEEEEcccccCCcccCceEEEECCCC
Confidence 653 2 334443322 345578999999999887653 3489999985 66 4200 01122222
Q ss_pred CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEc-CCCCEEEEEEe
Q 039497 483 PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS-ADGEWLLFTAN 561 (642)
Q Consensus 483 ~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S-~Dg~~l~~~~~ 561 (642)
......+.++++|+ |++..... ..|++++.++.....+... .. .+..++|+ +|++.|+++..
T Consensus 229 ~~~p~gi~~d~~G~-lwva~~~~-------~~v~~~d~~g~~~~~i~~~--~~-------~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 229 KGGMDGSVCDAEGH-IWNARWGE-------GAVDRYDTDGNHIARYEVP--GK-------QTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp SSEEEEEEECTTSC-EEEEEETT-------TEEEEECTTCCEEEEEECS--CS-------BEEEEEEESTTSCEEEEEEB
T ss_pred CCCCCeeEECCCCC-EEEEEeCC-------CEEEEECCCCCEEEEEECC--CC-------CcEEEEEecCCCCEEEEEec
Confidence 23445678999997 44444222 1399999965544444422 12 46789998 99999988876
Q ss_pred cCC
Q 039497 562 LGA 564 (642)
Q Consensus 562 ~~~ 564 (642)
..+
T Consensus 292 ~~~ 294 (326)
T 2ghs_A 292 REH 294 (326)
T ss_dssp CTT
T ss_pred CCC
Confidence 654
No 210
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.02 E-value=1e-07 Score=92.29 Aligned_cols=217 Identities=13% Similarity=0.105 Sum_probs=135.3
Q ss_pred CCEEEEEecCCCceeEEEEECCCCCee-----EEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecC
Q 039497 341 GGLIVFNHDFELNAGIKIAKSDGSKRW-----TLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD 413 (642)
Q Consensus 341 g~~l~~~~~~~~~~~l~~~d~~~~~~~-----~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 413 (642)
|.+|+|.. ...|+++++++.... .+.. ......++|+|+++.|+++... ... |+.++. +
T Consensus 1 ~~~l~~~~----~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~------~~~--I~~~~~--~ 66 (267)
T 1npe_A 1 GTHLLFAQ----TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS------EPS--IGRASL--H 66 (267)
T ss_dssp CEEEEEEE----EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETT------TTE--EEEEES--S
T ss_pred CcEEEEEc----CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECC------CCE--EEEEec--C
Confidence 44566754 258999999887532 2222 3456789999999999988742 344 444544 3
Q ss_pred CCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccceeEe
Q 039497 414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPSWS 492 (642)
Q Consensus 414 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~~s 492 (642)
++ ....+..........++++|+++.|+++... ...|+++++++... +.+.. .......++++
T Consensus 67 -----g~-----~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~--~~~I~~~~~~g~~~----~~~~~~~~~~P~~i~vd 130 (267)
T 1npe_A 67 -----GG-----EPTTIIRQDLGSPEGIALDHLGRTIFWTDSQ--LDRIEVAKMDGTQR----RVLFDTGLVNPRGIVTD 130 (267)
T ss_dssp -----SC-----CCEEEECTTCCCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSC----EEEECSSCSSEEEEEEE
T ss_pred -----CC-----CcEEEEECCCCCccEEEEEecCCeEEEEECC--CCEEEEEEcCCCCE----EEEEECCCCCccEEEEe
Confidence 22 2233322211355678999998899888753 34899999874432 33332 22334667999
Q ss_pred cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCC
Q 039497 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSW 572 (642)
Q Consensus 493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~ 572 (642)
|++.+|+++.... ....|+++++++...+.+..... . .+..+++++|+++||++....+
T Consensus 131 ~~~g~lyv~~~~~-----~~~~I~~~~~dg~~~~~~~~~~~-~-------~P~gia~d~~~~~lyv~d~~~~-------- 189 (267)
T 1npe_A 131 PVRGNLYWTDWNR-----DNPKIETSHMDGTNRRILAQDNL-G-------LPNGLTFDAFSSQLCWVDAGTH-------- 189 (267)
T ss_dssp TTTTEEEEEECCS-----SSCEEEEEETTSCCCEEEECTTC-S-------CEEEEEEETTTTEEEEEETTTT--------
T ss_pred eCCCEEEEEECCC-----CCcEEEEEecCCCCcEEEEECCC-C-------CCcEEEEcCCCCEEEEEECCCC--------
Confidence 9888888887542 13469999998876655543222 1 4567899999999988875432
Q ss_pred CCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEee
Q 039497 573 PNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 573 ~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~ 617 (642)
.|++++.++.....+.........++.. ++.++++.
T Consensus 190 --------~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~ 225 (267)
T 1npe_A 190 --------RAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTD 225 (267)
T ss_dssp --------EEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEE
T ss_pred --------EEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEE
Confidence 8999999876554443322222334443 34555554
No 211
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.00 E-value=2.5e-08 Score=100.46 Aligned_cols=280 Identities=8% Similarity=-0.056 Sum_probs=151.4
Q ss_pred ceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee-c--------
Q 039497 121 ALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC-E-------- 191 (642)
Q Consensus 121 ~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~-------- 191 (642)
.++.+|+++++...-...+... ++.+||||++|+......... -+......|.++|+.+++...-.. .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~--~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARS--AKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTT--TSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEccccccc--ccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 5888899888765432222233 699999999998775321000 001125679999999998654432 2
Q ss_pred -CCCcceEeeCCeEEEEEecCCCceEEEE--EecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCce
Q 039497 192 -RGGWPTWSGDSTIYFHRQADDGWWSIFR--VSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNF 268 (642)
Q Consensus 192 -~~~~~~wspdg~~~~~~~~~~g~~~l~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~ 268 (642)
.....++||||+.+|+.+..+. ..+.. +|..+ . ..+...+ . ..+.|+|++.++
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~-~~v~V~~iD~~t-v---------~~i~v~~--~--~~~~p~g~~~~~--------- 179 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSS-AAAGLSVPGASD-D---------QLTKSAS--C--FHIHPGAAATHY--------- 179 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSS-CEEEEEETTTEE-E---------EEEECSS--C--CCCEEEETTEEE---------
T ss_pred CCcceEEEcCCCCEEEEEccCCC-CeEEEEEEchhh-c---------eEEECCC--c--eEEccCCCeEEE---------
Confidence 1235699999987777643211 23444 55443 1 2222111 1 224566665444
Q ss_pred eeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEe
Q 039497 269 RHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNH 348 (642)
Q Consensus 269 ~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 348 (642)
..++||+.+++........ .. ...+ ... . .+. . +..|..++++..++|+.
T Consensus 180 -------------------~~~~dg~~~~vd~~~~~~~-~~-~v~~--~~t-~--~i~---v-g~~P~~~~~~~~~~~vs 229 (368)
T 1mda_H 180 -------------------LGSCPASLAASDLAAAPAA-AG-IVGA--QCT-G--AQN---C-SSQAAQANYPGMLVWAV 229 (368)
T ss_dssp -------------------CCCCTTSCEEEECCSSCCC-CE-ECCC--CSC-T--TSC---B-CSCCEEETTTTEEEECB
T ss_pred -------------------EEcCCCCEEEEECcccccc-CC-eEEE--Eee-e--eee---C-CCCccccccCCEEEEEc
Confidence 2345555544432110000 00 0000 000 0 000 0 11222377888888876
Q ss_pred cCCCceeEEEEECCCCCeeEEee--------------cCCceeeeeecCCCEEEEEEc---CCCcccCCCeEEEEEEEee
Q 039497 349 DFELNAGIKIAKSDGSKRWTLIK--------------DRTAFYNSWSPTEKHVIYTST---GPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 349 ~~~~~~~l~~~d~~~~~~~~l~~--------------~~~~~~~~~spdg~~l~~~~~---~~~~~~~~~~~~l~~~~~~ 411 (642)
. ..++++|+.+.....+.. ......+.++||++++++... +..... .....++++..
T Consensus 230 ~----~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~-~~~~~ViD~~t- 303 (368)
T 1mda_H 230 A----SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAA-AENTSSVTASV- 303 (368)
T ss_dssp S----SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSC-EEEEEEEESSS-
T ss_pred C----CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCccccc-CCCEEEEECCC-
Confidence 4 688999987654333221 111222679999999988753 100000 12344444433
Q ss_pred cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeC-CCCceeEEEEECCCCccccceeeCCCC
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSG-RSGHKNLFVLDAVNGEFNGDIRQLTDG 482 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~-~~g~~~l~~~d~~~g~~~~~~~~l~~~ 482 (642)
++ ....+..+. ....+.|+|||++++++.. .+ ..|.++|+.+++. ++.+.-+
T Consensus 304 --------~~----vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~--~~VsVID~~t~kv---v~~I~vg 356 (368)
T 1mda_H 304 --------GQ----TSGPISNGH--DSDAIIAAQDGASDNYANSAGT--EVLDIYDAASDQD---QSSVELD 356 (368)
T ss_dssp --------CC----EEECCEEEE--EECEEEECCSSSCEEEEEETTT--TEEEEEESSSCEE---EEECCCC
T ss_pred --------Ce----EEEEEECCC--CcceEEECCCCCEEEEEccCCC--CeEEEEECCCCcE---EEEEECC
Confidence 21 344444332 4667899999999888876 33 4899999999986 6666544
No 212
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.00 E-value=6.4e-08 Score=93.66 Aligned_cols=223 Identities=8% Similarity=0.011 Sum_probs=131.7
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
.+.++++|+ |+++.. .....|++++..+.....+.. ...+..++++++|+ |+++.. ... |+.++.
T Consensus 28 ~i~~~~~g~-l~v~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~-------~~~--i~~~d~- 94 (270)
T 1rwi_B 28 GVAVDSAGN-VYVTSE-GMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF-------NNR--VVTLAA- 94 (270)
T ss_dssp EEEECTTCC-EEEEEC-SSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEET-------TTE--EEEECT-
T ss_pred ceEECCCCC-EEEEcc-CCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcC-------CCE--EEEEeC-
Confidence 457899997 444132 234678888876665433322 24567889999998 666551 233 444544
Q ss_pred cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-CCCCccccee
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMPS 490 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-~~~~~~~~~~ 490 (642)
+ ++ ....+..........++++|+|+ |+++.. +...|++++..+... .... ........++
T Consensus 95 -~-----~~-----~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~--~~~~i~~~~~~~~~~----~~~~~~~~~~p~~i~ 156 (270)
T 1rwi_B 95 -G-----SN-----NQTVLPFDGLNYPEGLAVDTQGA-VYVADR--GNNRVVKLAAGSKTQ----TVLPFTGLNDPDGVA 156 (270)
T ss_dssp -T-----CS-----CCEECCCCSCSSEEEEEECTTCC-EEEEEG--GGTEEEEECTTCCSC----EECCCCSCCSCCCEE
T ss_pred -C-----Cc-----eEeeeecCCcCCCcceEECCCCC-EEEEEC--CCCEEEEEECCCcee----EeeccccCCCceeEE
Confidence 2 22 22333222113456789999997 555543 234788887654442 2222 2222456789
Q ss_pred EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCC
Q 039497 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV 570 (642)
Q Consensus 491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~ 570 (642)
++|+|+ |++..... ..|++++.++........... . .+..++++++| .|+++....
T Consensus 157 ~~~~g~-l~v~~~~~-------~~i~~~~~~~~~~~~~~~~~~-~-------~p~~i~~d~~g-~l~v~~~~~------- 212 (270)
T 1rwi_B 157 VDNSGN-VYVTDTDN-------NRVVKLEAESNNQVVLPFTDI-T-------APWGIAVDEAG-TVYVTEHNT------- 212 (270)
T ss_dssp ECTTCC-EEEEEGGG-------TEEEEECTTTCCEEECCCSSC-C-------SEEEEEECTTC-CEEEEETTT-------
T ss_pred EeCCCC-EEEEECCC-------CEEEEEecCCCceEeecccCC-C-------CceEEEECCCC-CEEEEECCC-------
Confidence 999998 66655432 249999998876554332221 2 45678999999 466555432
Q ss_pred CCCCCCCCCCcEEEEEcCCCceeeccCCC-CCCCCcEEecCCceEEeecCC
Q 039497 571 SWPNQFQPYGDLYVVKLDGSGLRRLTWNG-YENGTPAWHPGNQLDLGKLRL 620 (642)
Q Consensus 571 ~~~~~~~~~~~l~~~~~~~~~~~~lt~~~-~~~~~~~~s~dg~~~~~~~~~ 620 (642)
..|++++.++.....+.... .....++++++|+++++....
T Consensus 213 ---------~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 254 (270)
T 1rwi_B 213 ---------NQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGN 254 (270)
T ss_dssp ---------SCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGG
T ss_pred ---------CcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCC
Confidence 27999998887655544332 345678999999988876543
No 213
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.98 E-value=6.2e-08 Score=96.94 Aligned_cols=222 Identities=13% Similarity=0.077 Sum_probs=134.7
Q ss_pred CCCEEEEEecCCCceeEEEEECCCCCeeE-EeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCC
Q 039497 340 DGGLIVFNHDFELNAGIKIAKSDGSKRWT-LIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDN 418 (642)
Q Consensus 340 dg~~l~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 418 (642)
++++++.... ....|.++|.++++... +........++++++| +|+++.. ....+.+++...
T Consensus 52 ~~~~lyv~~~--~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g-~lyv~~~------~~~~v~~iD~~t-------- 114 (328)
T 3dsm_A 52 RDGIGWIVVN--NSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDE-KAYVTQI------WDYRIFIINPKT-------- 114 (328)
T ss_dssp ETTEEEEEEG--GGTEEEEEETTTCCEEEEEECCSSEEEEEEEETT-EEEEEEB------SCSEEEEEETTT--------
T ss_pred ECCEEEEEEc--CCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCC-eEEEEEC------CCCeEEEEECCC--------
Confidence 4566666553 34689999999887644 4335567888999998 6766652 244555544322
Q ss_pred CCCccccceEEccccCC----CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecC
Q 039497 419 NREEIPCDVKILTKEET----GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494 (642)
Q Consensus 419 ~~~~~~~~~~~l~~~~~----~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spd 494 (642)
+. ....+..... .....+++ ++++|+.+... ....|.++|+.+++. ...+... .....+.++||
T Consensus 115 -~~----~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~-~~~~v~viD~~t~~~---~~~i~~g-~~p~~i~~~~d 182 (328)
T 3dsm_A 115 -YE----ITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWS-YQNRILKIDTETDKV---VDELTIG-IQPTSLVMDKY 182 (328)
T ss_dssp -TE----EEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECT-TCCEEEEEETTTTEE---EEEEECS-SCBCCCEECTT
T ss_pred -Ce----EEEEEEcCCccccCCCcceEEE--ECCEEEEEcCC-CCCEEEEEECCCCeE---EEEEEcC-CCccceEEcCC
Confidence 21 1222322110 03445666 56777766531 134899999998885 4444433 23457799999
Q ss_pred CCEEEEEecCCCCC---CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCC
Q 039497 495 GDLIAFSSNRHNPD---NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS 571 (642)
Q Consensus 495 G~~l~~~~~~~~~~---~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~ 571 (642)
|+ +++........ ......|+++|.++++........... .+..++|+|||++||++..
T Consensus 183 G~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~-------~p~~la~~~d~~~lyv~~~---------- 244 (328)
T 3dsm_A 183 NK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGD-------WPSEVQLNGTRDTLYWINN---------- 244 (328)
T ss_dssp SE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTC-------CCEEEEECTTSCEEEEESS----------
T ss_pred CC-EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCC-------CceeEEEecCCCEEEEEcc----------
Confidence 97 55555432100 001256999999888765433221111 3578999999999887642
Q ss_pred CCCCCCCCCcEEEEEcCCCceee---ccCCCCCCCCcEEec-CCceEEee
Q 039497 572 WPNQFQPYGDLYVVKLDGSGLRR---LTWNGYENGTPAWHP-GNQLDLGK 617 (642)
Q Consensus 572 ~~~~~~~~~~l~~~~~~~~~~~~---lt~~~~~~~~~~~s~-dg~~~~~~ 617 (642)
.|+++|..++++.. +.........++++| +++++++.
T Consensus 245 ---------~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 245 ---------DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp ---------SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred ---------EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence 69999998876532 111123446789999 67778876
No 214
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.95 E-value=8.7e-08 Score=96.48 Aligned_cols=288 Identities=9% Similarity=-0.051 Sum_probs=149.6
Q ss_pred EEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEec-----cCCceeeEEEEEeecCCCCcccCCeec
Q 039497 216 SIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRR-----KNRNFRHIEIYDLTLNPNFHHYNPFVS 290 (642)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~-----~~~~~~~i~~~d~~~~~~~~~~~~~~s 290 (642)
.|..+|..+++ ....+.... .. .+.+||||++++++... .+.....+.++|+.+..
T Consensus 47 ~vsvID~~t~~-------v~~~i~vG~-~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~---------- 107 (368)
T 1mda_H 47 ENWVSCAGCGV-------TLGHSLGAF-LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL---------- 107 (368)
T ss_dssp EEEEEETTTTE-------EEEEEEECT-TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC----------
T ss_pred eEEEEECCCCe-------EEEEEeCCC-CC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC----------
Confidence 78889998873 333343322 23 68999999999887531 12234578888773221
Q ss_pred CCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEE--EECCCCCeeE
Q 039497 291 ANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKI--AKSDGSKRWT 368 (642)
Q Consensus 291 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~--~d~~~~~~~~ 368 (642)
.+.-. .+.+.... +.......+.+||||++++.... .....+.+ +|+.+ ...
T Consensus 108 ----vv~~I-----------------~v~~~~~~--~~g~~P~~ia~SpDGk~lyVan~-~~~~~v~V~~iD~~t--v~~ 161 (368)
T 1mda_H 108 ----PIADI-----------------ELPDAPRF--SVGPRVHIIGNCASSACLLFFLF-GSSAAAGLSVPGASD--DQL 161 (368)
T ss_dssp ----EEEEE-----------------EETTSCSC--CBSCCTTSEEECTTSSCEEEEEC-SSSCEEEEEETTTEE--EEE
T ss_pred ----EEEEE-----------------ECCCcccc--ccCCCcceEEEcCCCCEEEEEcc-CCCCeEEEEEEchhh--ceE
Confidence 11110 01000000 00012246689999998877653 22345666 77766 333
Q ss_pred EeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCC
Q 039497 369 LIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGK 448 (642)
Q Consensus 369 l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~ 448 (642)
+...+ . ....|+|+..++... .++.+.+ ++. +......+.........+..+. .+..+++++
T Consensus 162 i~v~~-~--~~~~p~g~~~~~~~~------~dg~~~~--vd~--~~~~~~~~~v~~~~t~~i~vg~-----~P~~~~~~~ 223 (368)
T 1mda_H 162 TKSAS-C--FHIHPGAAATHYLGS------CPASLAA--SDL--AAAPAAAGIVGAQCTGAQNCSS-----QAAQANYPG 223 (368)
T ss_dssp EECSS-C--CCCEEEETTEEECCC------CTTSCEE--EEC--CSSCCCCEECCCCSCTTSCBCS-----CCEEETTTT
T ss_pred EECCC-c--eEEccCCCeEEEEEc------CCCCEEE--EEC--ccccccCCeEEEEeeeeeeCCC-----CccccccCC
Confidence 32222 1 334577776655432 2344433 333 1000000100000000011111 111378888
Q ss_pred eEEEEeCCCCceeEEEEECCCCccccceeeCCCC----------CCcccceeEecCCCEEEEEec-C-CCCCCCCceeEE
Q 039497 449 FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG----------PWIDTMPSWSPKGDLIAFSSN-R-HNPDNVEAFSLY 516 (642)
Q Consensus 449 ~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~----------~~~~~~~~~spdG~~l~~~~~-~-~~~~~~~~~~l~ 516 (642)
.++|.+. ..++.+|..+++. +....+.-. +.....+.++|||+++|+... . +.- -.....+.
T Consensus 224 ~~~~vs~----~~V~viD~~~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~-~~~~~~~~ 297 (368)
T 1mda_H 224 MLVWAVA----SSILQGDIPAAGA-TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC-LAAAENTS 297 (368)
T ss_dssp EEEECBS----SCCEEEECCSSCC-EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCT-TSCEEEEE
T ss_pred EEEEEcC----CEEEEEECCCCcc-eEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcc-cccCCCEE
Confidence 8888886 4799999875431 001111110 011112579999999988754 2 100 00012366
Q ss_pred EEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEe-cCCcccCCCCCCCCCCCCCcEEEEEcCCCcee-e
Q 039497 517 VIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN-LGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR-R 594 (642)
Q Consensus 517 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ 594 (642)
++|+++.+...-...+. .+..+.|++||++++++.. ..+ .|.++|+.+.++. +
T Consensus 298 ViD~~t~~vv~~i~vg~---------~p~gi~~s~Dg~~l~va~~~~~~----------------~VsVID~~t~kvv~~ 352 (368)
T 1mda_H 298 SVTASVGQTSGPISNGH---------DSDAIIAAQDGASDNYANSAGTE----------------VLDIYDAASDQDQSS 352 (368)
T ss_dssp EEESSSCCEEECCEEEE---------EECEEEECCSSSCEEEEEETTTT----------------EEEEEESSSCEEEEE
T ss_pred EEECCCCeEEEEEECCC---------CcceEEECCCCCEEEEEccCCCC----------------eEEEEECCCCcEEEE
Confidence 99998876543222111 3567999999999888876 332 8999999887744 4
Q ss_pred ccC
Q 039497 595 LTW 597 (642)
Q Consensus 595 lt~ 597 (642)
+..
T Consensus 353 I~v 355 (368)
T 1mda_H 353 VEL 355 (368)
T ss_dssp CCC
T ss_pred EEC
Confidence 443
No 215
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.92 E-value=9.6e-08 Score=95.56 Aligned_cols=206 Identities=10% Similarity=0.007 Sum_probs=125.2
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cC------CceeeeeecCCCEEEEEEcCCCcccCCCeEEE
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DR------TAFYNSWSPTEKHVIYTSTGPIFQSERATVQI 405 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~------~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l 405 (642)
..+.++++| +++.... ....|+++|+++++...... .. ....+++ ++++|+++..+ ....+.+
T Consensus 87 ~~i~~~~~g-~lyv~~~--~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~-----~~~~v~v 156 (328)
T 3dsm_A 87 RYIHFLSDE-KAYVTQI--WDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWS-----YQNRILK 156 (328)
T ss_dssp EEEEEEETT-EEEEEEB--SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECT-----TCCEEEE
T ss_pred cEEEEeCCC-eEEEEEC--CCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCC-----CCCEEEE
Confidence 355788898 5554431 24789999999887654333 33 4556666 67778777521 1344555
Q ss_pred EEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCC--------ceeEEEEECCCCcccccee
Q 039497 406 ARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG--------HKNLFVLDAVNGEFNGDIR 477 (642)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g--------~~~l~~~d~~~g~~~~~~~ 477 (642)
++... +. ....+... .....+.++|||+ +++...... ...|+++|.++++. ..
T Consensus 157 iD~~t---------~~----~~~~i~~g--~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v---~~ 217 (328)
T 3dsm_A 157 IDTET---------DK----VVDELTIG--IQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTV---EK 217 (328)
T ss_dssp EETTT---------TE----EEEEEECS--SCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEE---EE
T ss_pred EECCC---------Ce----EEEEEEcC--CCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeE---EE
Confidence 44432 21 23333332 3456789999997 555543220 25899999998875 33
Q ss_pred eCCCC-CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCC-CCCCCcccccccceEEcCCCCE
Q 039497 478 QLTDG-PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP-EGSGDVDRERINHVCFSADGEW 555 (642)
Q Consensus 478 ~l~~~-~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~S~Dg~~ 555 (642)
.+.-. ......++++|||++|++... . |+++|+++++......... .. .+..++++|++..
T Consensus 218 ~~~~~~g~~p~~la~~~d~~~lyv~~~--~--------v~~~d~~t~~~~~~~~~~~~~~-------~p~gi~vdp~~g~ 280 (328)
T 3dsm_A 218 QFKFKLGDWPSEVQLNGTRDTLYWINN--D--------IWRMPVEADRVPVRPFLEFRDT-------KYYGLTVNPNNGE 280 (328)
T ss_dssp EEECCTTCCCEEEEECTTSCEEEEESS--S--------EEEEETTCSSCCSSCSBCCCSS-------CEEEEEECTTTCC
T ss_pred EEecCCCCCceeEEEecCCCEEEEEcc--E--------EEEEECCCCceeeeeeecCCCC-------ceEEEEEcCCCCe
Confidence 44321 124567899999999888754 2 9999998877531110010 11 4567899998777
Q ss_pred EEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc
Q 039497 556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596 (642)
Q Consensus 556 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt 596 (642)
|+++.... |.....|++++.++..+..+.
T Consensus 281 lyva~~~~------------y~~~~~V~v~d~~g~~~~~i~ 309 (328)
T 3dsm_A 281 VYVADAID------------YQQQGIVYRYSPQGKLIDEFY 309 (328)
T ss_dssp EEEEECTT------------SSSEEEEEEECTTCCEEEEEE
T ss_pred EEEEcccc------------cccCCEEEEECCCCCEEEEEE
Confidence 87775110 001238999999865555554
No 216
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.91 E-value=3.2e-07 Score=89.61 Aligned_cols=225 Identities=16% Similarity=0.115 Sum_probs=132.0
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeec-------CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEE
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD-------RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIA 406 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~-------~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~ 406 (642)
.++++++|+ +++.. .....|.+++.++.....+... ..+..+++++.+..|+++... ....+.+|
T Consensus 34 ~v~~~~~g~-l~v~~--~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~-----~~~~i~~~ 105 (286)
T 1q7f_A 34 GVAVNAQND-IIVAD--TNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS-----PTHQIQIY 105 (286)
T ss_dssp EEEECTTCC-EEEEE--GGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG-----GGCEEEEE
T ss_pred eEEECCCCC-EEEEE--CCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC-----CCCEEEEE
Confidence 457889997 44432 2246789999886544443221 245577885434456666521 13344444
Q ss_pred EEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC--CCC
Q 039497 407 RVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD--GPW 484 (642)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~--~~~ 484 (642)
+ . + +. ....+..........++++|||+ |+++... ...|++++.+ |+. +..+.. ...
T Consensus 106 d--~--~------g~----~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~--~~~i~~~~~~-g~~---~~~~~~~~~~~ 164 (286)
T 1q7f_A 106 N--Q--Y------GQ----FVRKFGATILQHPRGVTVDNKGR-IIVVECK--VMRVIIFDQN-GNV---LHKFGCSKHLE 164 (286)
T ss_dssp C--T--T------SC----EEEEECTTTCSCEEEEEECTTSC-EEEEETT--TTEEEEECTT-SCE---EEEEECTTTCS
T ss_pred C--C--C------Cc----EEEEecCccCCCceEEEEeCCCC-EEEEECC--CCEEEEEcCC-CCE---EEEeCCCCccC
Confidence 4 3 2 21 33333322213456789999997 5555432 3479999976 443 344432 223
Q ss_pred cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497 485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA 564 (642)
Q Consensus 485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~ 564 (642)
....++++|+|+ |+++.... ..|++++.++.....+...+... .+..+++++||+ |+++....+
T Consensus 165 ~p~~i~~~~~g~-l~v~~~~~-------~~i~~~~~~g~~~~~~~~~g~~~-------~p~~i~~d~~G~-l~v~~~~~~ 228 (286)
T 1q7f_A 165 FPNGVVVNDKQE-IFISDNRA-------HCVKVFNYEGQYLRQIGGEGITN-------YPIGVGINSNGE-ILIADNHNN 228 (286)
T ss_dssp SEEEEEECSSSE-EEEEEGGG-------TEEEEEETTCCEEEEESCTTTSC-------SEEEEEECTTCC-EEEEECSSS
T ss_pred CcEEEEECCCCC-EEEEECCC-------CEEEEEcCCCCEEEEEccCCccC-------CCcEEEECCCCC-EEEEeCCCC
Confidence 456789999997 55554432 24999998776555543322112 456789999996 444443221
Q ss_pred cccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCC--CCCcEEecCCceEEeec
Q 039497 565 VMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYE--NGTPAWHPGNQLDLGKL 618 (642)
Q Consensus 565 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~--~~~~~~s~dg~~~~~~~ 618 (642)
..|.+++.++..+..+...... ...++++|||+++++..
T Consensus 229 ---------------~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~ 269 (286)
T 1q7f_A 229 ---------------FNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLASK 269 (286)
T ss_dssp ---------------CEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEET
T ss_pred ---------------EEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEECC
Confidence 1689999887666666543322 34789999999888853
No 217
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=98.88 E-value=4.9e-08 Score=101.72 Aligned_cols=204 Identities=11% Similarity=0.000 Sum_probs=122.0
Q ss_pred CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCC--Ccc-cc-ceEEccccCCCCccCcEECCCCC
Q 039497 373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR--EEI-PC-DVKILTKEETGNNAFPSCSPDGK 448 (642)
Q Consensus 373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~-~~-~~~~l~~~~~~~~~~~~~SpDg~ 448 (642)
.....+++++++..|+.... ..+.++.......... ... ..+ .. ....+. .. ..+..++|+|||+
T Consensus 37 ~~~n~lavs~~~~~l~~~~~--------dgv~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~-~~v~~l~~spdg~ 105 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGA--------SGLQIFPTKNLLIQNK-PGDDPNKIVDKVQGLLVP-MK-FPIHHLALSCDNL 105 (434)
T ss_dssp SCCBCEEEETTTTEEEEEET--------TEEEEEEHHHHCCCCC-TTCCTTCEEECCCCEEEC-CS-SCEEEEEECTTSC
T ss_pred CCccEEEEecCCCEEEEECC--------CEEEEEEchHhhhhcc-cccCcccccccCcccccc-CC-CcccEEEEcCCCC
Confidence 34667889999988887652 3366654321000000 000 000 00 001111 12 3577899999999
Q ss_pred eEEEEe-CCCCceeEEEEECCCC-----ccc---cceeeCCCCCCcccceeEecC-CCEEEEEecCCCCCCCCceeEEEE
Q 039497 449 FLVFRS-GRSGHKNLFVLDAVNG-----EFN---GDIRQLTDGPWIDTMPSWSPK-GDLIAFSSNRHNPDNVEAFSLYVI 518 (642)
Q Consensus 449 ~l~~~~-~~~g~~~l~~~d~~~g-----~~~---~~~~~l~~~~~~~~~~~~spd-G~~l~~~~~~~~~~~~~~~~l~~~ 518 (642)
+|+... .......|.+||+.++ +.. .....+..+...+..++|+|+ ++.|+..+.++. |++|
T Consensus 106 ~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~--------v~iw 177 (434)
T 2oit_A 106 TLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS--------IAVL 177 (434)
T ss_dssp EEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC--------EEEE
T ss_pred EEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe--------EEEE
Confidence 998631 1124568999998754 110 001223334556788899998 787877777665 9999
Q ss_pred eCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCC
Q 039497 519 KPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN 598 (642)
Q Consensus 519 d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~ 598 (642)
|+.++.... ....+.. .+..++|||||++|+..+.++ .|.+|+..+.....+..+
T Consensus 178 D~~~~~~~~-~~~~~~~-------~v~~v~wspdg~~lasgs~dg-----------------~v~iwd~~~~~~~~~~~~ 232 (434)
T 2oit_A 178 QVTETVKVC-ATLPSTV-------AVTSVCWSPKGKQLAVGKQNG-----------------TVVQYLPTLQEKKVIPCP 232 (434)
T ss_dssp EESSSEEEE-EEECGGG-------CEEEEEECTTSSCEEEEETTS-----------------CEEEECTTCCEEEEECCC
T ss_pred EcCCCccee-eccCCCC-------ceeEEEEcCCCCEEEEEcCCC-----------------cEEEEccCCcccccccCC
Confidence 998774332 2222222 578899999999998887654 788889885444444332
Q ss_pred C-------CCCCCcEEecCCceEEeecCC
Q 039497 599 G-------YENGTPAWHPGNQLDLGKLRL 620 (642)
Q Consensus 599 ~-------~~~~~~~~s~dg~~~~~~~~~ 620 (642)
. ..+.++.|++++.++++..+.
T Consensus 233 ~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 233 PFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp TTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred cccCCCCceeEEEEEEecCceEEEEEccC
Confidence 1 145688999999888655443
No 218
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=98.87 E-value=8.8e-08 Score=99.75 Aligned_cols=220 Identities=13% Similarity=0.071 Sum_probs=125.9
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCC--------C---Ce------eEEeecCCceeeeeecCCCEEEEEEc-CC
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDG--------S---KR------WTLIKDRTAFYNSWSPTEKHVIYTST-GP 394 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~--------~---~~------~~l~~~~~~~~~~~spdg~~l~~~~~-~~ 394 (642)
..+++++++..|+.... ..+.+++... . .. ..+.....+..+.|+|||++|+++.. .
T Consensus 40 n~lavs~~~~~l~~~~~----dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg- 114 (434)
T 2oit_A 40 SLLAVSNKYGLVFAGGA----SGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS- 114 (434)
T ss_dssp BCEEEETTTTEEEEEET----TEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET-
T ss_pred cEEEEecCCCEEEEECC----CEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc-
Confidence 35578888887776543 1255543211 0 00 11111345889999999999986320 1
Q ss_pred CcccCCCeEEEEEEEeecCCCCCCCCC-ccccceEEccccCCCCccCcEECCC-CCeEEEEeCCCCceeEEEEECCCCcc
Q 039497 395 IFQSERATVQIARVSFQLDPSDDNNRE-EIPCDVKILTKEETGNNAFPSCSPD-GKFLVFRSGRSGHKNLFVLDAVNGEF 472 (642)
Q Consensus 395 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~SpD-g~~l~~~~~~~g~~~l~~~d~~~g~~ 472 (642)
..++.+++|++.....+. ... +.......+..+. ..+..+.|+|+ ++.|+..+. +..|.+||+.+++.
T Consensus 115 ---s~d~~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~las~s~---Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 115 ---EYGSIIAFFDVRTFSNEA---KQQKRPFAYHKLLKDAG-GMVIDMKWNPTVPSMVAVCLA---DGSIAVLQVTETVK 184 (434)
T ss_dssp ---TTEEEEEEEEHHHHHCTT---CSSCCCSEEEECCCSGG-GSEEEEEECSSCTTEEEEEET---TSCEEEEEESSSEE
T ss_pred ---CCCceEEEEEccccccCC---cCCcceeeeeeccCCCC-CceEEEEECCCCCCEEEEEEC---CCeEEEEEcCCCcc
Confidence 346789999986510000 000 0000122223233 56788999998 666666653 34799999987753
Q ss_pred ccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCC
Q 039497 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD 552 (642)
Q Consensus 473 ~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~D 552 (642)
......+...+..++|+|||++|+..+.++. |.+||+++.....+....... ......+..+.|+++
T Consensus 185 ---~~~~~~~~~~v~~v~wspdg~~lasgs~dg~--------v~iwd~~~~~~~~~~~~~~~~--~~~~~~v~~v~w~~~ 251 (434)
T 2oit_A 185 ---VCATLPSTVAVTSVCWSPKGKQLAVGKQNGT--------VVQYLPTLQEKKVIPCPPFYE--SDHPVRVLDVLWIGT 251 (434)
T ss_dssp ---EEEEECGGGCEEEEEECTTSSCEEEEETTSC--------EEEECTTCCEEEEECCCTTCC--TTSCEEEEEEEEEET
T ss_pred ---eeeccCCCCceeEEEEcCCCCEEEEEcCCCc--------EEEEccCCcccccccCCcccC--CCCceeEEEEEEecC
Confidence 2333333456778899999999999887765 999999843333332211000 000114678899999
Q ss_pred CCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497 553 GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590 (642)
Q Consensus 553 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 590 (642)
+.+++......+..+ ....+..|++...
T Consensus 252 ~~~l~~~~~~dg~~~----------~~~~v~i~~l~~~ 279 (434)
T 2oit_A 252 YVFAIVYAAADGTLE----------TSPDVVMALLPKK 279 (434)
T ss_dssp TEEEEEEEETTCCSS----------SCCEEEEEECCCT
T ss_pred ceEEEEEccCCCccC----------CCCceEEEEeccC
Confidence 988765554432210 1235777777643
No 219
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.85 E-value=8.5e-07 Score=89.29 Aligned_cols=214 Identities=13% Similarity=0.057 Sum_probs=139.4
Q ss_pred EEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCC
Q 039497 343 LIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNRE 421 (642)
Q Consensus 343 ~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 421 (642)
.|+|.. ...|+.+++++.....+.. ......+.|++.+..|+++... .. .|+.++. + ++
T Consensus 46 ~ll~~~----~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~------~~--~I~r~~~--~-----g~- 105 (349)
T 3v64_C 46 VLLFAN----RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVT------LD--RILRANL--N-----GS- 105 (349)
T ss_dssp EEEEEC----BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETT------TT--EEEEEET--T-----SC-
T ss_pred eeEeec----ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEecc------CC--ceEEEec--C-----CC-
Confidence 456643 3578999998887665554 4457788999999999988732 33 4666665 3 22
Q ss_pred ccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-CCCCcccceeEecCCCEEEE
Q 039497 422 EIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMPSWSPKGDLIAF 500 (642)
Q Consensus 422 ~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-~~~~~~~~~~~spdG~~l~~ 500 (642)
..+.+..........+++.+.+..|+++... ...|+++++++... +.+. ........++++|++..||+
T Consensus 106 ----~~~~~~~~~~~~p~glavd~~~g~ly~~d~~--~~~I~~~~~dG~~~----~~l~~~~l~~P~~iavdp~~g~ly~ 175 (349)
T 3v64_C 106 ----NVEEVVSTGLESPGGLAVDWVHDKLYWTDSG--TSRIEVANLDGAHR----KVLLWQSLEKPRAIALHPMEGTIYW 175 (349)
T ss_dssp ----SCEEEECSSCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSCSC----EEEECTTCSCEEEEEEETTTTEEEE
T ss_pred ----CceEEEeCCCCCccEEEEecCCCeEEEEcCC--CCeEEEEcCCCCce----EEEEeCCCCCcceEEEecCcCeEEE
Confidence 3333322211345568898888889888753 34899999885442 4433 22234466799998888988
Q ss_pred EecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCC
Q 039497 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYG 580 (642)
Q Consensus 501 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 580 (642)
+.... ...|+++++++...+.+...+.. .+..++|++++++||++.... .
T Consensus 176 td~~~------~~~I~r~~~dG~~~~~~~~~~~~--------~PnGla~d~~~~~lY~aD~~~----------------~ 225 (349)
T 3v64_C 176 TDWGN------TPRIEASSMDGSGRRIIADTHLF--------WPNGLTIDYAGRRMYWVDAKH----------------H 225 (349)
T ss_dssp EECSS------SCEEEEEETTSCSCEESCCSSCS--------CEEEEEEETTTTEEEEEETTT----------------T
T ss_pred eccCC------CCEEEEEeCCCCCcEEEEECCCC--------CcceEEEeCCCCEEEEEECCC----------------C
Confidence 87543 24699999998777666443222 356899999999999987543 2
Q ss_pred cEEEEEcCCCceeeccCC-CCCCCCcEEecCCceEEee
Q 039497 581 DLYVVKLDGSGLRRLTWN-GYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 581 ~l~~~~~~~~~~~~lt~~-~~~~~~~~~s~dg~~~~~~ 617 (642)
.|+++++++...+.+... ......+++. ++.+|++.
T Consensus 226 ~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td 262 (349)
T 3v64_C 226 VIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTD 262 (349)
T ss_dssp EEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEE
T ss_pred EEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEec
Confidence 899999998765554432 2233455663 34444443
No 220
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.84 E-value=5.8e-07 Score=91.91 Aligned_cols=214 Identities=13% Similarity=0.065 Sum_probs=140.7
Q ss_pred EEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCC
Q 039497 343 LIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNRE 421 (642)
Q Consensus 343 ~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 421 (642)
+|+|.. ...|+.+++++.....+.. ......+.|.+.+..|+++... .. .|+.++. + ++
T Consensus 89 ~l~~~~----~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~------~~--~I~r~~~--~-----g~- 148 (386)
T 3v65_B 89 VLLFAN----RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVT------LD--RILRANL--N-----GS- 148 (386)
T ss_dssp EEEEEC----BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETT------TT--EEEEEET--T-----SC-
T ss_pred eeEeec----CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCC------CC--cEEEEec--C-----CC-
Confidence 455533 3679999999887666655 4567789999999999988732 33 4666665 3 22
Q ss_pred ccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccceeEecCCCEEEE
Q 039497 422 EIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPSWSPKGDLIAF 500 (642)
Q Consensus 422 ~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~ 500 (642)
..+.+..........+++.+.+..|+++... ...|+++++++... +.+.. .......++++|++.+||+
T Consensus 149 ----~~~~~~~~~~~~p~glavd~~~g~lY~~d~~--~~~I~~~~~dg~~~----~~l~~~~l~~P~giavdp~~g~ly~ 218 (386)
T 3v65_B 149 ----NVEEVVSTGLESPGGLAVDWVHDKLYWTDSG--TSRIEVANLDGAHR----KVLLWQSLEKPRAIALHPMEGTIYW 218 (386)
T ss_dssp ----CEEEEECSSCSCCCCEEEETTTTEEEEEETT--TTEEEECBTTSCSC----EEEECSSCSCEEEEEEETTTTEEEE
T ss_pred ----CcEEEEeCCCCCccEEEEEeCCCeEEEEcCC--CCeEEEEeCCCCce----EEeecCCCCCCcEEEEEcCCCeEEE
Confidence 3333322221345678999888889888753 34899999885442 44332 2234466799999988988
Q ss_pred EecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCC
Q 039497 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYG 580 (642)
Q Consensus 501 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 580 (642)
+.... ...|+++++++...+.+...+.. .+..++|++++++||++.... .
T Consensus 219 td~~~------~~~I~r~~~dG~~~~~~~~~~~~--------~PnGlavd~~~~~lY~aD~~~----------------~ 268 (386)
T 3v65_B 219 TDWGN------TPRIEASSMDGSGRRIIADTHLF--------WPNGLTIDYAGRRMYWVDAKH----------------H 268 (386)
T ss_dssp EECSS------SCEEEEEETTSCSCEEEECSSCS--------CEEEEEEEGGGTEEEEEETTT----------------T
T ss_pred eccCC------CCEEEEEeCCCCCcEEEEECCCC--------CeeeEEEeCCCCEEEEEECCC----------------C
Confidence 86543 24699999998877766543322 356799999999999987543 2
Q ss_pred cEEEEEcCCCceeeccCCC-CCCCCcEEecCCceEEee
Q 039497 581 DLYVVKLDGSGLRRLTWNG-YENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 581 ~l~~~~~~~~~~~~lt~~~-~~~~~~~~s~dg~~~~~~ 617 (642)
.|+++++++...+.+.... .....+++. ++.+|++.
T Consensus 269 ~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td 305 (386)
T 3v65_B 269 VIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTD 305 (386)
T ss_dssp EEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEE
T ss_pred EEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEee
Confidence 8999999987655554322 233455663 33444443
No 221
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.82 E-value=2.3e-06 Score=86.07 Aligned_cols=219 Identities=12% Similarity=0.052 Sum_probs=141.8
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
.+.|++.++.|++... ....|++++++++....+.. ......+++.+.+..|+++... .. .|..++.
T Consensus 77 ~l~~d~~~~~ly~~D~--~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~------~~--~I~~~~~- 145 (349)
T 3v64_C 77 ALDFHHRRELVFWSDV--TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSG------TS--RIEVANL- 145 (349)
T ss_dssp EEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETT------TT--EEEEEET-
T ss_pred EEEEeccccEEEEEec--cCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCC------CC--eEEEEcC-
Confidence 4578888888888763 34689999999887666544 2346678899888889988742 33 4555555
Q ss_pred cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCccccee
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPS 490 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~ 490 (642)
+ +. ..+.+..........+++.|++..|+++.... ...|+++++++.. .+.+.. .-.....++
T Consensus 146 -d-----G~-----~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~-~~~I~r~~~dG~~----~~~~~~~~~~~PnGla 209 (349)
T 3v64_C 146 -D-----GA-----HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN-TPRIEASSMDGSG----RRIIADTHLFWPNGLT 209 (349)
T ss_dssp -T-----SC-----SCEEEECTTCSCEEEEEEETTTTEEEEEECSS-SCEEEEEETTSCS----CEESCCSSCSCEEEEE
T ss_pred -C-----CC-----ceEEEEeCCCCCcceEEEecCcCeEEEeccCC-CCEEEEEeCCCCC----cEEEEECCCCCcceEE
Confidence 3 22 22333322213456789999888998886532 3689999998544 355543 223456789
Q ss_pred EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCC
Q 039497 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV 570 (642)
Q Consensus 491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~ 570 (642)
++|+++.||++.... ..|+++++++...+.+..... . .+..+++ ++..||++....
T Consensus 210 ~d~~~~~lY~aD~~~-------~~I~~~~~dG~~~~~~~~~~~-~-------~P~giav--~~~~ly~td~~~------- 265 (349)
T 3v64_C 210 IDYAGRRMYWVDAKH-------HVIERANLDGSHRKAVISQGL-P-------HPFAITV--FEDSLYWTDWHT------- 265 (349)
T ss_dssp EETTTTEEEEEETTT-------TEEEEEETTSCSCEEEECSSC-S-------SEEEEEE--ETTEEEEEETTT-------
T ss_pred EeCCCCEEEEEECCC-------CEEEEEeCCCCceEEEEeCCC-C-------CceEEEE--ECCEEEEecCCC-------
Confidence 999999999987654 359999999877666654332 2 3456666 456788776543
Q ss_pred CCCCCCCCCCcEEEEE-cCCCceeeccCCCCCCCCcEE-ecCCc
Q 039497 571 SWPNQFQPYGDLYVVK-LDGSGLRRLTWNGYENGTPAW-HPGNQ 612 (642)
Q Consensus 571 ~~~~~~~~~~~l~~~~-~~~~~~~~lt~~~~~~~~~~~-s~dg~ 612 (642)
..|+.++ .++...+.+.........+++ +|..|
T Consensus 266 ---------~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~~q 300 (349)
T 3v64_C 266 ---------KSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQ 300 (349)
T ss_dssp ---------TEEEEEETTTCCSCEEEECSCSCCCCEEEECGGGS
T ss_pred ---------CeEEEEEccCCCccEEeccCCCCCceEEEEccccC
Confidence 2899998 566556655543333445544 44433
No 222
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.81 E-value=2.2e-06 Score=87.56 Aligned_cols=219 Identities=12% Similarity=0.045 Sum_probs=141.9
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
.+.|.+.+++|++... ....|++++++++....+.. ......+++.+.+..|+++... .. .|+.++.
T Consensus 120 gl~~d~~~~~ly~~D~--~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~------~~--~I~~~~~- 188 (386)
T 3v65_B 120 ALDFHHRRELVFWSDV--TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSG------TS--RIEVANL- 188 (386)
T ss_dssp EEEEETTTTEEEEEET--TTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETT------TT--EEEECBT-
T ss_pred EEEEecCCCeEEEEeC--CCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCC------CC--eEEEEeC-
Confidence 4688888888888763 35689999999887666544 2345678899888889988742 33 4555555
Q ss_pred cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-CCCCccccee
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMPS 490 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-~~~~~~~~~~ 490 (642)
+ +. ..+.+..........+++.|++.+|+++.... ...|+++++++... +.+. ..-.....++
T Consensus 189 -d-----g~-----~~~~l~~~~l~~P~giavdp~~g~ly~td~~~-~~~I~r~~~dG~~~----~~~~~~~~~~PnGla 252 (386)
T 3v65_B 189 -D-----GA-----HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN-TPRIEASSMDGSGR----RIIADTHLFWPNGLT 252 (386)
T ss_dssp -T-----SC-----SCEEEECSSCSCEEEEEEETTTTEEEEEECSS-SCEEEEEETTSCSC----EEEECSSCSCEEEEE
T ss_pred -C-----CC-----ceEEeecCCCCCCcEEEEEcCCCeEEEeccCC-CCEEEEEeCCCCCc----EEEEECCCCCeeeEE
Confidence 3 22 22333322214556789999998998886532 36899999985442 4443 2323456789
Q ss_pred EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCC
Q 039497 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV 570 (642)
Q Consensus 491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~ 570 (642)
|+|+++.||++.... ..|+++++++...+.+...... .+..+++ ++..||++....
T Consensus 253 vd~~~~~lY~aD~~~-------~~I~~~d~dG~~~~~~~~~~~~--------~P~giav--~~~~ly~td~~~------- 308 (386)
T 3v65_B 253 IDYAGRRMYWVDAKH-------HVIERANLDGSHRKAVISQGLP--------HPFAITV--FEDSLYWTDWHT------- 308 (386)
T ss_dssp EEGGGTEEEEEETTT-------TEEEEECTTSCSCEEEECSSCS--------SEEEEEE--ETTEEEEEETTT-------
T ss_pred EeCCCCEEEEEECCC-------CEEEEEeCCCCeeEEEEECCCC--------CceEEEE--ECCEEEEeeCCC-------
Confidence 999999999997654 3599999998776666543322 3455666 556788876443
Q ss_pred CCCCCCCCCCcEEEEE-cCCCceeeccCCCCCCCCcEE-ecCCc
Q 039497 571 SWPNQFQPYGDLYVVK-LDGSGLRRLTWNGYENGTPAW-HPGNQ 612 (642)
Q Consensus 571 ~~~~~~~~~~~l~~~~-~~~~~~~~lt~~~~~~~~~~~-s~dg~ 612 (642)
..|++++ .++...+.|.........+++ +|..+
T Consensus 309 ---------~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~~q 343 (386)
T 3v65_B 309 ---------KSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQ 343 (386)
T ss_dssp ---------TEEEEEETTTCCSCEEEECSCSCCCCEEEESGGGS
T ss_pred ---------CeEEEEECCCCcceEEEccCCCCCceEEEEchhcC
Confidence 2899998 556556666544334445544 34433
No 223
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.80 E-value=3.8e-07 Score=91.23 Aligned_cols=238 Identities=10% Similarity=0.076 Sum_probs=134.5
Q ss_pred ccEEcCCCCEEEEEecCCC----------------------ceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEE
Q 039497 334 FPSFSPDGGLIVFNHDFEL----------------------NAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVI 388 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~----------------------~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~ 388 (642)
.++++|+|+.++.... +. ...|+++|.++++...... -.....++++|+|+ |+
T Consensus 28 ~va~d~~G~l~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~-l~ 105 (329)
T 3fvz_A 28 GVALDSKNNLVIFHRG-DHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-YW 105 (329)
T ss_dssp EEEECTTCCEEEEECT-TCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-EE
T ss_pred EEEECCCCCEEEEeCC-CCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC-EE
Confidence 4578999985544332 21 1369999998777654433 23567889999999 66
Q ss_pred EEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc--------cCCCCccCcEECCCCCeEEEEeCCCCce
Q 039497 389 YTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK--------EETGNNAFPSCSPDGKFLVFRSGRSGHK 460 (642)
Q Consensus 389 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~SpDg~~l~~~~~~~g~~ 460 (642)
++.. ....+.+|+ . + +... ....+.. ........++++|++..|+++... +..
T Consensus 106 v~d~------~~~~v~~~~--~--~-----g~~~---~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~-~~~ 166 (329)
T 3fvz_A 106 VTDV------ALHQVFKLD--P--H-----SKEG---PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY-CNS 166 (329)
T ss_dssp EEET------TTTEEEEEC--T--T-----CSSC---CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS-SCC
T ss_pred EEEC------CCCEEEEEe--C--C-----CCeE---EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC-CCC
Confidence 6653 244444444 3 2 1100 1222211 111245568999944456555521 234
Q ss_pred eEEEEECCCCccccceeeCCCCC----------CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE-Eee
Q 039497 461 NLFVLDAVNGEFNGDIRQLTDGP----------WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR-RIH 529 (642)
Q Consensus 461 ~l~~~d~~~g~~~~~~~~l~~~~----------~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~ 529 (642)
.|++++.+ |+. +..+.... .....++++|++..|+++..... .|.++++++++.. .+.
T Consensus 167 ~I~~~~~~-g~~---~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~-------~I~~~~~~~G~~~~~~~ 235 (329)
T 3fvz_A 167 RIVQFSPS-GKF---VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENG-------RIQCFKTDTKEFVREIK 235 (329)
T ss_dssp EEEEECTT-SCE---EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTT-------EEEEEETTTCCEEEEEC
T ss_pred eEEEEcCC-CCE---EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCC-------EEEEEECCCCcEEEEEe
Confidence 89999955 654 34443111 12456799999667877766443 5999999855543 333
Q ss_pred ecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc----CCCCCCCCc
Q 039497 530 VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT----WNGYENGTP 605 (642)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt----~~~~~~~~~ 605 (642)
...... .+..+.|+| | .++.......... . ....|++++...+++.... ........+
T Consensus 236 ~~~~~~-------~~~~~~~~p-g-~~~~~~g~~~v~~----~-----~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~i 297 (329)
T 3fvz_A 236 HASFGR-------NVFAISYIP-G-FLFAVNGKPYFGD----Q-----EPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDI 297 (329)
T ss_dssp CTTTTT-------CEEEEEEET-T-EEEEEECCCCTTC----S-----CCCCEEEEETTTCCEEEEECCSSSCCSSEEEE
T ss_pred ccccCC-------CcceeeecC-C-EEEEeCCCEEecc----C-----CCcEEEEEEcCCCeEEEEEcCCCCccCCeeEE
Confidence 222222 456788998 3 3333332211000 0 1237999997776654432 222334678
Q ss_pred EEecCCceEEeecCCC
Q 039497 606 AWHPGNQLDLGKLRLE 621 (642)
Q Consensus 606 ~~s~dg~~~~~~~~~~ 621 (642)
+++|||.+|++....+
T Consensus 298 a~~~dG~lyvad~~~~ 313 (329)
T 3fvz_A 298 VASEDGTVYIGDAHTN 313 (329)
T ss_dssp EECTTSEEEEEESSSC
T ss_pred EECCCCCEEEEECCCC
Confidence 9999998888875543
No 224
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.79 E-value=5e-06 Score=84.16 Aligned_cols=203 Identities=12% Similarity=0.006 Sum_probs=111.1
Q ss_pred cEEcCCCCEEEEEec----CCCceeEEEEECCCCCeeEEee-c----CCceeeeeecCCCEEEEEEcC------CCcc--
Q 039497 335 PSFSPDGGLIVFNHD----FELNAGIKIAKSDGSKRWTLIK-D----RTAFYNSWSPTEKHVIYTSTG------PIFQ-- 397 (642)
Q Consensus 335 ~~~spdg~~l~~~~~----~~~~~~l~~~d~~~~~~~~l~~-~----~~~~~~~~spdg~~l~~~~~~------~~~~-- 397 (642)
...+||| |+.... .++...|.++|.++.+...... . .....+.|+|+++.++....+ ..+.
T Consensus 143 ~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~ 220 (462)
T 2ece_A 143 VHCGPDA--IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLE 220 (462)
T ss_dssp EEECSSC--EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTT
T ss_pred eeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchh
Confidence 3578999 433221 2345789999999888665544 2 223457889999966555321 0010
Q ss_pred ----cCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC-CCCccCc--EECCCCCeEEEEeC---CCCceeEEEEEC
Q 039497 398 ----SERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE-TGNNAFP--SCSPDGKFLVFRSG---RSGHKNLFVLDA 467 (642)
Q Consensus 398 ----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~--~~SpDg~~l~~~~~---~~g~~~l~~~d~ 467 (642)
.....+.+|++.. +. ....+..+. .....++ +|+|||++++.... .+...+|+++..
T Consensus 221 ~~~~~~~d~V~v~D~~~---------~k----~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~ 287 (462)
T 2ece_A 221 HLKDRYGNRIHFWDLRK---------RK----RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFY 287 (462)
T ss_dssp THHHHSCCEEEEEETTT---------TE----EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred hhhhccCCEEEEEECCC---------Cc----EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence 1256777777743 21 333443321 0122333 45999999887765 112235655444
Q ss_pred CCCccccceee--CCCC----------------CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC-CCceEEe
Q 039497 468 VNGEFNGDIRQ--LTDG----------------PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD-GSGLRRI 528 (642)
Q Consensus 468 ~~g~~~~~~~~--l~~~----------------~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l 528 (642)
+.|+.. ..+. +... ......+.+||||++||++.... ..|.++|+. .++.+.+
T Consensus 288 d~g~~~-~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~-------d~VavfdV~d~~~~~lv 359 (462)
T 2ece_A 288 EDGKWN-AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI-------GEVRQYDISNPFKPVLT 359 (462)
T ss_dssp ETTEEE-EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT-------TEEEEEECSSTTSCEEE
T ss_pred cCCcee-EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC-------CEEEEEEecCCCCcEEE
Confidence 344320 0111 1110 12345678999999988877644 358888874 3334433
Q ss_pred eecCCCCCC--------CcccccccceEEcCCCCEEEEEE
Q 039497 529 HVAGPEGSG--------DVDRERINHVCFSADGEWLLFTA 560 (642)
Q Consensus 529 ~~~~~~~~~--------~~~~~~~~~~~~S~Dg~~l~~~~ 560 (642)
..-...+.. ..-...+..+.+||||++|+++.
T Consensus 360 ~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 360 GKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 221111100 00000256789999999998887
No 225
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.78 E-value=2.5e-07 Score=96.99 Aligned_cols=237 Identities=13% Similarity=0.065 Sum_probs=138.0
Q ss_pred ccEEcC-----CCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeee-e-cCCCEEEEEEcCC---------
Q 039497 334 FPSFSP-----DGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSW-S-PTEKHVIYTSTGP--------- 394 (642)
Q Consensus 334 ~~~~sp-----dg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~-s-pdg~~l~~~~~~~--------- 394 (642)
++..|. ||++++... .....|.++|+++.+...+.. ......+.+ + ||+++++......
T Consensus 89 h~~~s~t~g~~DG~~lfVnd--~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~ 166 (595)
T 1fwx_A 89 HVHMSFTEGKYDGRFLFMND--KANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTN 166 (595)
T ss_dssp CEEEEEETTEEEEEEEEEEE--TTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSS
T ss_pred ccccCCCCCCcCCCEEEEEc--CCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcc
Confidence 345555 888776644 345789999999988666544 355677776 5 9999997775321
Q ss_pred CcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCc---------------
Q 039497 395 IFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGH--------------- 459 (642)
Q Consensus 395 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~--------------- 459 (642)
++..+...-.+-.++. + +. + ...++.-. +....+.+||||++++.++.....
T Consensus 167 l~~~~~~~~~vtvID~--~-----t~-~---v~~qI~Vg--g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v 233 (595)
T 1fwx_A 167 MEDVANYVNVFTAVDA--D-----KW-E---VAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHI 233 (595)
T ss_dssp TTCGGGEEEEEEEEET--T-----TT-E---EEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEE
T ss_pred cccccccCceEEEEEC--C-----CC-e---EEEEEEeC--CCccceEECCCCCEEEEEecCcccCcchhhccccccceE
Confidence 1111122334445555 2 11 1 23333322 245668899999999988854311
Q ss_pred --------------------eeEEEEECCC--CccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEE
Q 039497 460 --------------------KNLFVLDAVN--GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYV 517 (642)
Q Consensus 460 --------------------~~l~~~d~~~--g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~ 517 (642)
..+.++|..+ ++. .+..+... .....+.+||||++++.+.... ..|.+
T Consensus 234 ~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~--~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s-------~~VsV 303 (595)
T 1fwx_A 234 VVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSL--FTRYIPIA-NNPHGCNMAPDKKHLCVAGKLS-------PTVTV 303 (595)
T ss_dssp EEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCS--SEEEEEEE-SSCCCEEECTTSSEEEEECTTS-------SBEEE
T ss_pred EEeeccceeEeccCCCeeEECcEEEEeCcccCCce--eEEEEecC-CCceEEEEcCCCCEEEEeCCCC-------CeEEE
Confidence 1366777665 321 01233222 2345689999999988877644 35999
Q ss_pred EeCCCCce----------EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEc
Q 039497 518 IKPDGSGL----------RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKL 587 (642)
Q Consensus 518 ~d~~~~~~----------~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 587 (642)
+|+++.+. ..+.... .+ ..+.+.+|++|| ++|.+ ..-. .+|..|++
T Consensus 304 id~~~~~~~~~~~l~~~~~v~~~v~-vG------~gP~h~aF~~dG-~aY~t-~~ld---------------sqV~kwdi 359 (595)
T 1fwx_A 304 LDVTRFDAVFYENADPRSAVVAEPE-LG------LGPLHTAFDGRG-NAYTS-LFLD---------------SQVVKWNI 359 (595)
T ss_dssp EEGGGHHHHHHSCCCGGGGEEECCB-CC------SCEEEEEECTTS-EEEEE-ETTT---------------TEEEEEEH
T ss_pred EECcccccccccccCcccceEEEcC-CC------CCcceEEECCCC-eEEEE-EecC---------------CcEEEEEh
Confidence 99875321 1111111 11 146789999999 65444 4332 27888887
Q ss_pred CC----------Cc-eeeccCCCCC------CCCcEEecCCceEEeecCC
Q 039497 588 DG----------SG-LRRLTWNGYE------NGTPAWHPGNQLDLGKLRL 620 (642)
Q Consensus 588 ~~----------~~-~~~lt~~~~~------~~~~~~s~dg~~~~~~~~~ 620 (642)
+. .+ +..+..+ +. ......+|||+++++.-.+
T Consensus 360 ~~a~~~~~g~~~~~vi~kidV~-yqpGh~~~~~g~t~~~DGk~l~~~Nk~ 408 (595)
T 1fwx_A 360 EDAIRAYAGEKVDPIKDKLDVH-YQPGHLKTVMGETLDATNDWLVCLSKF 408 (595)
T ss_dssp HHHHHHHHTCSCCCEEEEEECS-SCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred hHhhhhhcccccceeEEEeecc-cccccceeccceEeCCCCCEEEEcCCC
Confidence 65 12 2333322 11 1355779999998765333
No 226
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.78 E-value=6.2e-06 Score=83.46 Aligned_cols=242 Identities=11% Similarity=0.024 Sum_probs=129.2
Q ss_pred c--CCCCEEEEEecCCCceeEEEEECCCC----CeeEEee--------c-CCceeeeeecCCCEEEEEEcCCCcccCCCe
Q 039497 338 S--PDGGLIVFNHDFELNAGIKIAKSDGS----KRWTLIK--------D-RTAFYNSWSPTEKHVIYTSTGPIFQSERAT 402 (642)
Q Consensus 338 s--pdg~~l~~~~~~~~~~~l~~~d~~~~----~~~~l~~--------~-~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 402 (642)
+ +++++|+.... ....|+++|+.+. +...... . .....+..+||| |++...+.. .+...
T Consensus 90 ~~~~~r~~l~v~~l--~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~--~g~~~ 163 (462)
T 2ece_A 90 KPNIERRFLIVPGL--RSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNE--EGEGP 163 (462)
T ss_dssp CTTCCSCEEEEEBT--TTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEET--TSCSC
T ss_pred CCCccCCEEEEccC--CCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCc--CCCCC
Confidence 7 88888877653 4578999998755 2222221 1 134456789999 555443211 11223
Q ss_pred EEEEEEEeecCCCCCCCCCccccceEEcccc--CCCCccCcEECCCCCeEEEEeC------C----------CCceeEEE
Q 039497 403 VQIARVSFQLDPSDDNNREEIPCDVKILTKE--ETGNNAFPSCSPDGKFLVFRSG------R----------SGHKNLFV 464 (642)
Q Consensus 403 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~SpDg~~l~~~~~------~----------~g~~~l~~ 464 (642)
-.|..++. + +++ ....+... .......+.|+||++.++.+.. . ....+|.+
T Consensus 164 g~v~vlD~--~-----T~~----v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v 232 (462)
T 2ece_A 164 GGILMLDH--Y-----SFE----PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHF 232 (462)
T ss_dssp CEEEEECT--T-----TCC----EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEE
T ss_pred CeEEEEEC--C-----CCe----EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEE
Confidence 34555544 1 121 33344322 1123456889999996655431 0 12458999
Q ss_pred EECCCCccccceeeCCCC-C-Ccccce--eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee---cC--CCC
Q 039497 465 LDAVNGEFNGDIRQLTDG-P-WIDTMP--SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV---AG--PEG 535 (642)
Q Consensus 465 ~d~~~g~~~~~~~~l~~~-~-~~~~~~--~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~--~~~ 535 (642)
||+.+++. +..|.-. . .....+ +|+|||++++....-.. .+....|+++..+.+..+.+.. .. ...
T Consensus 233 ~D~~~~k~---~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~--~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~ 307 (462)
T 2ece_A 233 WDLRKRKR---IHSLTLGEENRMALELRPLHDPTKLMGFINMVVSL--KDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEG 307 (462)
T ss_dssp EETTTTEE---EEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEET--TTCCEEEEEEEEETTEEEEEEEEEECCEECCS
T ss_pred EECCCCcE---eeEEecCCCCCccceeEeeECCCCCEEEEEEeeec--cCCCceEEEEEecCCceeEEEEEeCCCccccc
Confidence 99998775 4444432 1 122233 45999999888776000 0012346555444454332211 00 000
Q ss_pred CCC-cc------cccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcC-CCce---eeccCCCC----
Q 039497 536 SGD-VD------RERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLD-GSGL---RRLTWNGY---- 600 (642)
Q Consensus 536 ~~~-~~------~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~---~~lt~~~~---- 600 (642)
... .. ......+.+|+||++||++.. +. ..|.++++. .+.+ .++...+.
T Consensus 308 ~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr-g~---------------d~VavfdV~d~~~~~lv~~I~tGG~~~~~ 371 (462)
T 2ece_A 308 NLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW-GI---------------GEVRQYDISNPFKPVLTGKVKLGGIFHRA 371 (462)
T ss_dssp SCCGGGGGGTEECCCCCCEEECTTSCEEEEEET-TT---------------TEEEEEECSSTTSCEEEEEEECBTTTTCB
T ss_pred cccccccccccCCCceeEEEECCCCCEEEEEeC-CC---------------CEEEEEEecCCCCcEEEEEEEeCCeeccc
Confidence 000 00 014578899999998876654 32 278888874 3222 23322211
Q ss_pred ----------CCCCcEEecCCceE-Eee
Q 039497 601 ----------ENGTPAWHPGNQLD-LGK 617 (642)
Q Consensus 601 ----------~~~~~~~s~dg~~~-~~~ 617 (642)
....+.+||||+++ +++
T Consensus 372 ~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 372 DHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred cccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 35789999999765 666
No 227
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.76 E-value=3.3e-06 Score=83.72 Aligned_cols=198 Identities=8% Similarity=0.043 Sum_probs=127.8
Q ss_pred EEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCC
Q 039497 343 LIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNRE 421 (642)
Q Consensus 343 ~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 421 (642)
+|+|.. ...|.++++++.+...+.. ......+.|+++++.|+++.. ... .|+.++. ++.. .+.
T Consensus 3 ~ll~~~----~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~------~~~--~I~~~~~--~g~~--~~~ 66 (316)
T 1ijq_A 3 YLFFTN----RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL------SQR--MICSTQL--DRAH--GVS 66 (316)
T ss_dssp EEEEEC----BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEET------TTT--EEEEEEC-----------
T ss_pred EEEEEC----CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEEC------CCC--cEEEEEC--CCCC--CCc
Confidence 456643 3679999999887666554 456778999999999999873 233 4455544 2100 001
Q ss_pred ccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccceeEecCCCEEEE
Q 039497 422 EIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPSWSPKGDLIAF 500 (642)
Q Consensus 422 ~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~ 500 (642)
....+..........+++.+.++.|+++... ...|.++++++.. .+.+.. .......++.+|++.+|++
T Consensus 67 ----~~~~~~~~~~~~p~glavd~~~~~ly~~d~~--~~~I~~~~~~g~~----~~~~~~~~~~~P~~iavdp~~g~ly~ 136 (316)
T 1ijq_A 67 ----SYDTVISRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADTKGVK----RKTLFRENGSKPRAIVVDPVHGFMYW 136 (316)
T ss_dssp -----CEEEECSSCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSSS----EEEEEECTTCCEEEEEEETTTTEEEE
T ss_pred ----ccEEEEeCCCCCcCEEEEeecCCeEEEEECC--CCEEEEEeCCCCc----eEEEEECCCCCcceEEeCCCCCEEEE
Confidence 2222221111345567888888888888653 3489999988544 244432 2234466789998888888
Q ss_pred EecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCC
Q 039497 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYG 580 (642)
Q Consensus 501 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 580 (642)
+.... ...|+++++++...+.+..... . .+..++|++++++||++.... .
T Consensus 137 ~d~~~------~~~I~~~~~dG~~~~~~~~~~~-~-------~P~gla~d~~~~~lY~~D~~~----------------~ 186 (316)
T 1ijq_A 137 TDWGT------PAKIKKGGLNGVDIYSLVTENI-Q-------WPNGITLDLLSGRLYWVDSKL----------------H 186 (316)
T ss_dssp EECSS------SCEEEEEETTSCCEEEEECSSC-S-------CEEEEEEETTTTEEEEEETTT----------------T
T ss_pred EccCC------CCeEEEEcCCCCCeEEEEECCC-C-------CceEEEEeccCCEEEEEECCC----------------C
Confidence 86532 2469999998877665543222 1 456899999999999987543 2
Q ss_pred cEEEEEcCCCceeecc
Q 039497 581 DLYVVKLDGSGLRRLT 596 (642)
Q Consensus 581 ~l~~~~~~~~~~~~lt 596 (642)
.|+++++++...+.+.
T Consensus 187 ~I~~~d~dg~~~~~~~ 202 (316)
T 1ijq_A 187 SISSIDVNGGNRKTIL 202 (316)
T ss_dssp EEEEEETTSCSCEEEE
T ss_pred eEEEEecCCCceEEEe
Confidence 8999999987665554
No 228
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.74 E-value=7.2e-07 Score=91.95 Aligned_cols=190 Identities=8% Similarity=0.026 Sum_probs=116.7
Q ss_pred CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEE
Q 039497 374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453 (642)
Q Consensus 374 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~ 453 (642)
....++|+|+|+ |+++.. ....++.++ . + ++ ....+.... .... ++|+|+|+.|++.
T Consensus 132 ~P~~la~d~~g~-lyv~d~------~~~~I~~id--~--~-----~g-----~~~~~~~~~-~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 132 YMWGIAAVGNNT-VLAYQR------DDPRVRLIS--V--D-----DN-----KVTTVHPGF-KGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CEEEEEECSTTE-EEEEET------TTTEEEEEE--T--T-----TT-----EEEEEEETC-CBCB-CEECTTSSEEEEE
T ss_pred CceEEEEeCCCC-EEEEec------CCCcEEEEE--C--C-----CC-----EEEEeeccC-CCCc-eeEecCCCcEEEE
Confidence 466788999987 766663 234554444 4 2 23 444443332 3334 9999999988776
Q ss_pred eCCCCceeEEEEECCCCccccceeeC----CCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEee
Q 039497 454 SGRSGHKNLFVLDAVNGEFNGDIRQL----TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH 529 (642)
Q Consensus 454 ~~~~g~~~l~~~d~~~g~~~~~~~~l----~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 529 (642)
... +...|++++..++.. ...+ .........++++|++..||+... . ..|+++|++++....+.
T Consensus 189 d~~-~~~~I~~~d~~~~~~---~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~-~-------~~I~~~d~~~~~~~~~~ 256 (409)
T 3hrp_A 189 GWE-GTHTVYVYMKASGWA---PTRIGQLGSTFSGKIGAVALDETEEWLYFVDS-N-------KNFGRFNVKTQEVTLIK 256 (409)
T ss_dssp BSS-TTCEEEEEEGGGTTC---EEEEEECCTTSCSCCCBCEECTTSSEEEEECT-T-------CEEEEEETTTCCEEEEE
T ss_pred ecC-CCceEEEEEcCCCce---eEEeeeccchhcCCcEEEEEeCCCCeEEEEEC-C-------CcEEEEECCCCCEEEEe
Confidence 643 333899999886653 2333 213334567899996667887433 2 25999999988765552
Q ss_pred ecCCCCCCCccccccc-ceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCC---------
Q 039497 530 VAGPEGSGDVDRERIN-HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNG--------- 599 (642)
Q Consensus 530 ~~~~~~~~~~~~~~~~-~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~--------- 599 (642)
.....+. ....+. .++|+|++..||++.... ..|++++.++. ...+....
T Consensus 257 ~~~~~g~---~~~~P~~~ia~~p~~g~lyv~d~~~----------------~~I~~~~~~g~-~~~~~g~~~~~g~~dg~ 316 (409)
T 3hrp_A 257 QLELSGS---LGTNPGPYLIYYFVDSNFYMSDQNL----------------SSVYKITPDGE-CEWFCGSATQKTVQDGL 316 (409)
T ss_dssp ECCCCSC---CCCSSCCEEEEETTTTEEEEEETTT----------------TEEEEECTTCC-EEEEEECTTCCSCBCEE
T ss_pred cccccCC---CCCCccccEEEeCCCCEEEEEeCCC----------------CEEEEEecCCC-EEEEEeCCCCCCcCCCc
Confidence 2111110 000223 899999888888876443 28999998875 33333221
Q ss_pred ------CCCCCcEEecCCceEEeec
Q 039497 600 ------YENGTPAWHPGNQLDLGKL 618 (642)
Q Consensus 600 ------~~~~~~~~s~dg~~~~~~~ 618 (642)
.....++++++|++|++..
T Consensus 317 ~~~~~~~~P~gia~d~dG~lyvad~ 341 (409)
T 3hrp_A 317 REEALFAQPNGMTVDEDGNFYIVDG 341 (409)
T ss_dssp GGGCBCSSEEEEEECTTCCEEEEET
T ss_pred ccccEeCCCeEEEEeCCCCEEEEeC
Confidence 1235678999998888765
No 229
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.74 E-value=2.8e-06 Score=81.89 Aligned_cols=194 Identities=8% Similarity=-0.031 Sum_probs=117.1
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
..+.++++|+ |++... ...|++++.++.....+.. ......++++|+|+ |+++.. ....+.++ +.
T Consensus 70 ~~i~~~~~g~-l~v~~~---~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~------~~~~i~~~--~~ 136 (270)
T 1rwi_B 70 QGLAVDGAGT-VYVTDF---NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA-VYVADR------GNNRVVKL--AA 136 (270)
T ss_dssp CCEEECTTCC-EEEEET---TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCC-EEEEEG------GGTEEEEE--CT
T ss_pred ceeEECCCCC-EEEEcC---CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCC-EEEEEC------CCCEEEEE--EC
Confidence 3568899998 444432 4689999988876554432 24567889999997 666552 23344444 33
Q ss_pred ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccce
Q 039497 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMP 489 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~ 489 (642)
+.. ...............++++|||+ |+++.. +...|++++.+++.. ..... .......+
T Consensus 137 --------~~~----~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~--~~~~i~~~~~~~~~~----~~~~~~~~~~p~~i 197 (270)
T 1rwi_B 137 --------GSK----TQTVLPFTGLNDPDGVAVDNSGN-VYVTDT--DNNRVVKLEAESNNQ----VVLPFTDITAPWGI 197 (270)
T ss_dssp --------TCC----SCEECCCCSCCSCCCEEECTTCC-EEEEEG--GGTEEEEECTTTCCE----EECCCSSCCSEEEE
T ss_pred --------CCc----eeEeeccccCCCceeEEEeCCCC-EEEEEC--CCCEEEEEecCCCce----EeecccCCCCceEE
Confidence 111 12222111113456789999997 555543 234799999886653 33322 22345667
Q ss_pred eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCC
Q 039497 490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEP 569 (642)
Q Consensus 490 ~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~ 569 (642)
+++++|+ |++...... .|++++.++.....+...+. . .+..+++++||+ |+++....+
T Consensus 198 ~~d~~g~-l~v~~~~~~-------~v~~~~~~~~~~~~~~~~~~-~-------~p~~i~~~~~g~-l~v~~~~~~----- 255 (270)
T 1rwi_B 198 AVDEAGT-VYVTEHNTN-------QVVKLLAGSTTSTVLPFTGL-N-------TPLAVAVDSDRT-VYVADRGND----- 255 (270)
T ss_dssp EECTTCC-EEEEETTTS-------CEEEECTTCSCCEECCCCSC-S-------CEEEEEECTTCC-EEEEEGGGT-----
T ss_pred EECCCCC-EEEEECCCC-------cEEEEcCCCCcceeeccCCC-C-------CceeEEECCCCC-EEEEECCCC-----
Confidence 9999994 666654332 39999998765544322111 1 457889999997 666654332
Q ss_pred CCCCCCCCCCCcEEEEEcCCCc
Q 039497 570 VSWPNQFQPYGDLYVVKLDGSG 591 (642)
Q Consensus 570 ~~~~~~~~~~~~l~~~~~~~~~ 591 (642)
.|..+++...+
T Consensus 256 -----------~v~~~~~~~~~ 266 (270)
T 1rwi_B 256 -----------RVVKLTSLEHH 266 (270)
T ss_dssp -----------EEEEECCCGGG
T ss_pred -----------EEEEEcCCCcc
Confidence 78888766543
No 230
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.74 E-value=1.5e-06 Score=85.84 Aligned_cols=227 Identities=11% Similarity=0.085 Sum_probs=133.5
Q ss_pred CccEEcCCCCEEEEEe-----cCCCceeEEEEECCCCCeeEEee------cCCceeeeeecCCCEEEEEEcCCCcccCCC
Q 039497 333 SFPSFSPDGGLIVFNH-----DFELNAGIKIAKSDGSKRWTLIK------DRTAFYNSWSPTEKHVIYTSTGPIFQSERA 401 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~-----~~~~~~~l~~~d~~~~~~~~l~~------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 401 (642)
..+.|+++|+ |++.. .......|++++..+++...+.. ...+..+.+++++..|+++.. ..
T Consensus 21 ~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-------~~ 92 (314)
T 1pjx_A 21 EGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-------RL 92 (314)
T ss_dssp EEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-------TT
T ss_pred cCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-------CC
Confidence 3668999997 44440 01223679999988877655432 245678899999445666652 22
Q ss_pred eEEEEEEEeecCCCCCCCCCccccceEEc-ccc----CCCCccCcEECCCCCeEEEEeCCCC-------------ceeEE
Q 039497 402 TVQIARVSFQLDPSDDNNREEIPCDVKIL-TKE----ETGNNAFPSCSPDGKFLVFRSGRSG-------------HKNLF 463 (642)
Q Consensus 402 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~----~~~~~~~~~~SpDg~~l~~~~~~~g-------------~~~l~ 463 (642)
.|+.++. .+ +...+ ... .......++++|||+. +++....+ ...|+
T Consensus 93 --~l~~~d~--------~g-----~~~~~~~~~~~~~~~~~~~~i~~d~~g~l-~v~~~~~~~~~~~~~~~~~~~~~~l~ 156 (314)
T 1pjx_A 93 --GLLVVQT--------DG-----TFEEIAKKDSEGRRMQGCNDCAFDYEGNL-WITAPAGEVAPADYTRSMQEKFGSIY 156 (314)
T ss_dssp --EEEEEET--------TS-----CEEECCSBCTTSCBCBCCCEEEECTTSCE-EEEECBCBCTTSCCCBTTSSSCEEEE
T ss_pred --CEEEEeC--------CC-----CEEEEEeccCCCccccCCcCEEECCCCCE-EEEecCcccccccccccccCCCCeEE
Confidence 3555555 22 33333 211 1123567899999964 44443221 25799
Q ss_pred EEECCCCccccceeeCCCCCCcccceeEe----cCCCEEEEEecCCCCCCCCceeEEEEeCC-CCceE---Eeeec-CCC
Q 039497 464 VLDAVNGEFNGDIRQLTDGPWIDTMPSWS----PKGDLIAFSSNRHNPDNVEAFSLYVIKPD-GSGLR---RIHVA-GPE 534 (642)
Q Consensus 464 ~~d~~~g~~~~~~~~l~~~~~~~~~~~~s----pdG~~l~~~~~~~~~~~~~~~~l~~~d~~-~~~~~---~l~~~-~~~ 534 (642)
+++.+ |+. ..+.........++|+ |||+.|++..... ..|++++++ .++.. .+... ...
T Consensus 157 ~~~~~-g~~----~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~-------~~i~~~~~~~~g~~~~~~~~~~~~~~~ 224 (314)
T 1pjx_A 157 CFTTD-GQM----IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPT-------KKLWSYDIKGPAKIENKKVWGHIPGTH 224 (314)
T ss_dssp EECTT-SCE----EEEEEEESSEEEEEEEECTTSCEEEEEEEETTT-------TEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred EECCC-CCE----EEeccCCCCcceEEEecccCCCCCEEEEEECCC-------CeEEEEECCCCCccccceEEEECCCCC
Confidence 99987 663 4433222334567999 9998888776543 248999876 34322 12111 111
Q ss_pred -CCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCc
Q 039497 535 -GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQ 612 (642)
Q Consensus 535 -~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~ 612 (642)
. .+..+.+++||+ |+++.... ..|++++.++++ ...+.........++|++||+
T Consensus 225 ~~-------~p~~i~~d~~G~-l~v~~~~~----------------~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~ 280 (314)
T 1pjx_A 225 EG-------GADGMDFDEDNN-LLVANWGS----------------SHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTK 280 (314)
T ss_dssp SC-------EEEEEEEBTTCC-EEEEEETT----------------TEEEEECTTCBSCSEEEECSSSCEEEEEECTTSS
T ss_pred CC-------CCCceEECCCCC-EEEEEcCC----------------CEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCC
Confidence 2 356789999997 44443222 279999988443 444443334557889999998
Q ss_pred -eEEeecC
Q 039497 613 -LDLGKLR 619 (642)
Q Consensus 613 -~~~~~~~ 619 (642)
++++...
T Consensus 281 ~l~v~~~~ 288 (314)
T 1pjx_A 281 TIFVTEHE 288 (314)
T ss_dssp EEEEEETT
T ss_pred EEEEEeCC
Confidence 6666544
No 231
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.73 E-value=1.6e-06 Score=85.69 Aligned_cols=201 Identities=9% Similarity=0.034 Sum_probs=117.2
Q ss_pred ccEEcCC-CCEEEEEecCCCceeEEEEECCCCCeeEE-ee------cCCceeeeeecCCCEEEEEEcCCC-------ccc
Q 039497 334 FPSFSPD-GGLIVFNHDFELNAGIKIAKSDGSKRWTL-IK------DRTAFYNSWSPTEKHVIYTSTGPI-------FQS 398 (642)
Q Consensus 334 ~~~~spd-g~~l~~~~~~~~~~~l~~~d~~~~~~~~l-~~------~~~~~~~~~spdg~~l~~~~~~~~-------~~~ 398 (642)
.+.++++ |+ |++... ...|++++.+ ++...+ .. ...+..+.++|+|+ |+++..... ...
T Consensus 75 ~i~~~~~~g~-l~v~~~---~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~ 148 (314)
T 1pjx_A 75 GCQCDRDANQ-LFVADM---RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSM 148 (314)
T ss_dssp EEEECSSSSE-EEEEET---TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTT
T ss_pred eEEEecCCCc-EEEEEC---CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccc
Confidence 4578898 65 544432 2379999998 665554 32 12367889999997 555542100 000
Q ss_pred CCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEEC----CCCCeEEEEeCCCCceeEEEEECC-CCccc
Q 039497 399 ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCS----PDGKFLVFRSGRSGHKNLFVLDAV-NGEFN 473 (642)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~S----pDg~~l~~~~~~~g~~~l~~~d~~-~g~~~ 473 (642)
......|+.++. .+ ....+.... .....++|+ |||+.|++..... ..|++++.+ +|+..
T Consensus 149 ~~~~~~l~~~~~--------~g-----~~~~~~~~~-~~~~~i~~~~~~d~dg~~l~v~~~~~--~~i~~~~~~~~g~~~ 212 (314)
T 1pjx_A 149 QEKFGSIYCFTT--------DG-----QMIQVDTAF-QFPNGIAVRHMNDGRPYQLIVAETPT--KKLWSYDIKGPAKIE 212 (314)
T ss_dssp SSSCEEEEEECT--------TS-----CEEEEEEEE-SSEEEEEEEECTTSCEEEEEEEETTT--TEEEEEEEEETTEEE
T ss_pred cCCCCeEEEECC--------CC-----CEEEeccCC-CCcceEEEecccCCCCCEEEEEECCC--CeEEEEECCCCCccc
Confidence 011356777765 22 333332222 344567899 9998887776433 478888876 45410
Q ss_pred --cceeeCCCCC-CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce-EEeeecCCCCCCCcccccccceEE
Q 039497 474 --GDIRQLTDGP-WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL-RRIHVAGPEGSGDVDRERINHVCF 549 (642)
Q Consensus 474 --~~~~~l~~~~-~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~ 549 (642)
.....+.... .....++++++|+.++.....+ .|+++|.++++. ..+.. . .. .+..++|
T Consensus 213 ~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~--------~i~~~d~~~g~~~~~~~~-~-~~-------~~~~i~~ 275 (314)
T 1pjx_A 213 NKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS--------HIEVFGPDGGQPKMRIRC-P-FE-------KPSNLHF 275 (314)
T ss_dssp EEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT--------EEEEECTTCBSCSEEEEC-S-SS-------CEEEEEE
T ss_pred cceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC--------EEEEEcCCCCcEeEEEeC-C-CC-------CceeEEE
Confidence 0012222221 3345678999997443333332 399999985543 33322 1 12 4678899
Q ss_pred cCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC
Q 039497 550 SADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589 (642)
Q Consensus 550 S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 589 (642)
++||++|+++....+ .|+.++++.
T Consensus 276 ~~dg~~l~v~~~~~~----------------~l~~~~~~~ 299 (314)
T 1pjx_A 276 KPQTKTIFVTEHENN----------------AVWKFEWQR 299 (314)
T ss_dssp CTTSSEEEEEETTTT----------------EEEEEECSS
T ss_pred CCCCCEEEEEeCCCC----------------eEEEEeCCC
Confidence 999998888775432 799998764
No 232
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.71 E-value=3.9e-06 Score=83.02 Aligned_cols=196 Identities=11% Similarity=0.083 Sum_probs=127.2
Q ss_pred EEEEEecCCCceeEEEEECCCCC--eeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCC
Q 039497 343 LIVFNHDFELNAGIKIAKSDGSK--RWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNN 419 (642)
Q Consensus 343 ~l~~~~~~~~~~~l~~~d~~~~~--~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 419 (642)
+|+|.. ...|.++++++.. ...+.. ......+.|.+.+..|+++... .. .|+.+.. + +
T Consensus 6 ~ll~~~----~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~------~~--~I~r~~~--~-----g 66 (318)
T 3sov_A 6 LLLYAN----RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVS------EE--AIKRTEF--N-----K 66 (318)
T ss_dssp EEEEEC----EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETT------TT--EEEEEET--T-----S
T ss_pred EEEEEc----cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECC------CC--cEEEEEc--c-----C
Confidence 456633 4789999998874 222222 3446678999988889988732 33 4555655 3 2
Q ss_pred CCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-CCCCcccceeEecCCCEE
Q 039497 420 REEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMPSWSPKGDLI 498 (642)
Q Consensus 420 ~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-~~~~~~~~~~~spdG~~l 498 (642)
+.. ....+...- .....+++.+.+..|+++... ...|.++++++... +.+. ........+++.|.+.+|
T Consensus 67 ~~~---~~~~~~~~l-~~p~glavd~~~g~ly~~d~~--~~~I~~~~~dG~~~----~~l~~~~~~~P~giavdp~~g~l 136 (318)
T 3sov_A 67 TES---VQNVVVSGL-LSPDGLACDWLGEKLYWTDSE--TNRIEVSNLDGSLR----KVLFWQELDQPRAIALDPSSGFM 136 (318)
T ss_dssp SSC---CCEEEEECC-SCCCEEEEETTTTEEEEEETT--TTEEEEEETTSCSC----EEEECSSCSSEEEEEEEGGGTEE
T ss_pred CCc---eEEEEcCCC-CCccEEEEEcCCCeEEEEECC--CCEEEEEECCCCcE----EEEEeCCCCCccEEEEeCCCCEE
Confidence 210 112222222 345568888888888888653 34899999885442 4443 332344667899988888
Q ss_pred EEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCC
Q 039497 499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQP 578 (642)
Q Consensus 499 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~ 578 (642)
+++.... ...|+++++++...+.+...+.. .+..++|+++++.||++....
T Consensus 137 y~td~~~------~~~I~r~~~dG~~~~~~~~~~l~--------~Pnglavd~~~~~lY~aD~~~--------------- 187 (318)
T 3sov_A 137 YWTDWGE------VPKIERAGMDGSSRFIIINSEIY--------WPNGLTLDYEEQKLYWADAKL--------------- 187 (318)
T ss_dssp EEEECSS------SCEEEEEETTSCSCEEEECSSCS--------CEEEEEEETTTTEEEEEETTT---------------
T ss_pred EEEecCC------CCEEEEEEcCCCCeEEEEECCCC--------CccEEEEeccCCEEEEEECCC---------------
Confidence 8886431 34699999998776666543322 356899999999999987543
Q ss_pred CCcEEEEEcCCCceeeccC
Q 039497 579 YGDLYVVKLDGSGLRRLTW 597 (642)
Q Consensus 579 ~~~l~~~~~~~~~~~~lt~ 597 (642)
..|+++++++...+.+..
T Consensus 188 -~~I~~~d~dG~~~~~~~~ 205 (318)
T 3sov_A 188 -NFIHKSNLDGTNRQAVVK 205 (318)
T ss_dssp -TEEEEEETTSCSCEEEEC
T ss_pred -CEEEEEcCCCCceEEEec
Confidence 289999999876655543
No 233
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.67 E-value=3.5e-06 Score=80.04 Aligned_cols=202 Identities=13% Similarity=0.066 Sum_probs=122.6
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (642)
.+.|++|| +|+......+...|.++|+++++...... ........+..+|++|+.+.. ..+.+.+++...
T Consensus 25 Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~------~~~~v~viD~~t-- 95 (266)
T 2iwa_A 25 GLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVW------LKNIGFIYDRRT-- 95 (266)
T ss_dssp EEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEET------TCSEEEEEETTT--
T ss_pred cEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEe------cCCEEEEEECCC--
Confidence 45789986 45544433456899999999988765544 333444456667888888874 355555555432
Q ss_pred CCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC--C---ccc
Q 039497 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP--W---IDT 487 (642)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~--~---~~~ 487 (642)
.. ....+.... .....+++||++++.+ + +...|+.+|.++.+. +..+.-.. . ...
T Consensus 96 -------~~----v~~~i~~g~---~~g~glt~Dg~~l~vs-~--gs~~l~viD~~t~~v---~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 96 -------LS----NIKNFTHQM---KDGWGLATDGKILYGS-D--GTSILYEIDPHTFKL---IKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp -------TE----EEEEEECCS---SSCCEEEECSSSEEEE-C--SSSEEEEECTTTCCE---EEEEECEETTEECCCEE
T ss_pred -------Cc----EEEEEECCC---CCeEEEEECCCEEEEE-C--CCCeEEEEECCCCcE---EEEEEECCCCcccccce
Confidence 21 334443321 1235688899998765 3 456999999998775 45544321 1 234
Q ss_pred ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-CCC----CCCcccccccceEEcCCCCEEEEEEec
Q 039497 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEG----SGDVDRERINHVCFSADGEWLLFTANL 562 (642)
Q Consensus 488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~----~~~~~~~~~~~~~~S~Dg~~l~~~~~~ 562 (642)
.+.|. || .||...... ..|.++|+++++........ ... ...........++|+||+++|+++...
T Consensus 156 ele~~-dg-~lyvn~~~~-------~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~ 226 (266)
T 2iwa_A 156 ELEYI-NG-EVWANIWQT-------DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL 226 (266)
T ss_dssp EEEEE-TT-EEEEEETTS-------SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT
T ss_pred eEEEE-CC-EEEEecCCC-------CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC
Confidence 55777 66 566554322 35999999998875544321 000 000000134678999999998877654
Q ss_pred CCcccCCCCCCCCCCCCCcEEEEEcCC
Q 039497 563 GAVMAEPVSWPNQFQPYGDLYVVKLDG 589 (642)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~l~~~~~~~ 589 (642)
. ..|+.+++..
T Consensus 227 ~----------------~~v~~i~l~~ 237 (266)
T 2iwa_A 227 W----------------PKLFEIKLHL 237 (266)
T ss_dssp C----------------SEEEEEEEEE
T ss_pred C----------------CeEEEEEEec
Confidence 3 2899888754
No 234
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.66 E-value=1.3e-05 Score=80.02 Aligned_cols=204 Identities=11% Similarity=0.025 Sum_probs=118.6
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCC--eeEEee----------cCCceeeeeecCCCEEEEEEcCCCcccCCC
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK--RWTLIK----------DRTAFYNSWSPTEKHVIYTSTGPIFQSERA 401 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~--~~~l~~----------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 401 (642)
.++++|+|+ |++.. .....|++++.++.. ...+.. -.....++++|++..|+++.. ....
T Consensus 95 gia~d~~g~-l~v~d--~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~-----~~~~ 166 (329)
T 3fvz_A 95 GLSIDTDGN-YWVTD--VALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDG-----YCNS 166 (329)
T ss_dssp EEEECTTSC-EEEEE--TTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEEC-----SSCC
T ss_pred EEEECCCCC-EEEEE--CCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeC-----CCCC
Confidence 457899999 44443 335689999988763 333321 114667899995445666652 0234
Q ss_pred eEEEEEEEeecCCCCCCCCCccccceEEccccC---------CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcc
Q 039497 402 TVQIARVSFQLDPSDDNNREEIPCDVKILTKEE---------TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472 (642)
Q Consensus 402 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~ 472 (642)
.+.+|+ . + +. ....+.... ......++++||+..|+++... ...|.+++.++|+.
T Consensus 167 ~I~~~~--~--~------g~----~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~--~~~I~~~~~~~G~~ 230 (329)
T 3fvz_A 167 RIVQFS--P--S------GK----FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE--NGRIQCFKTDTKEF 230 (329)
T ss_dssp EEEEEC--T--T------SC----EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT--TTEEEEEETTTCCE
T ss_pred eEEEEc--C--C------CC----EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC--CCEEEEEECCCCcE
Confidence 444444 3 2 21 233332111 0225568999997778777653 34899999987876
Q ss_pred ccceeeCCC--CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec--CCCCCCCcccccccceE
Q 039497 473 NGDIRQLTD--GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA--GPEGSGDVDRERINHVC 548 (642)
Q Consensus 473 ~~~~~~l~~--~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~ 548 (642)
+..+.. .......++++| | .++.......--......|+++++.+++....... .... .+..++
T Consensus 231 ---~~~~~~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-------~p~~ia 298 (329)
T 3fvz_A 231 ---VREIKHASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-------MPHDIV 298 (329)
T ss_dssp ---EEEECCTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-------SEEEEE
T ss_pred ---EEEEeccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-------CeeEEE
Confidence 555532 223345678898 3 33333222110011344699999888776554321 1112 467899
Q ss_pred EcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497 549 FSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590 (642)
Q Consensus 549 ~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 590 (642)
++||| .|+++....+ .|+++++++.
T Consensus 299 ~~~dG-~lyvad~~~~----------------~I~~~~~~~~ 323 (329)
T 3fvz_A 299 ASEDG-TVYIGDAHTN----------------TVWKFTLTEK 323 (329)
T ss_dssp ECTTS-EEEEEESSSC----------------CEEEEEEEEC
T ss_pred ECCCC-CEEEEECCCC----------------EEEEEeCCcc
Confidence 99999 6766654332 7999887654
No 235
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.65 E-value=2.8e-05 Score=76.90 Aligned_cols=206 Identities=12% Similarity=0.008 Sum_probs=129.0
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCC----CCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEE
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDG----SKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIA 406 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~----~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~ 406 (642)
..+.|++++++|++... ....|+++++++ .....+.. ......+++.+.++.|+++.. ....+ .
T Consensus 33 ~g~~~d~~~~~ly~~D~--~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~------~~~~I--~ 102 (316)
T 1ijq_A 33 VALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS------VLGTV--S 102 (316)
T ss_dssp EEEEEETTTTEEEEEET--TTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEET------TTTEE--E
T ss_pred EEEEEEeCCCEEEEEEC--CCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEEC------CCCEE--E
Confidence 35688988888888763 356899999887 33333332 235677888888888988873 23444 4
Q ss_pred EEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCc
Q 039497 407 RVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWI 485 (642)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~ 485 (642)
.++. + +. ..+.+..........+++.|++.+|+++... ....|++++++ |+. .+.+.. .-..
T Consensus 103 ~~~~--~-----g~-----~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~-~~~~I~~~~~d-G~~---~~~~~~~~~~~ 165 (316)
T 1ijq_A 103 VADT--K-----GV-----KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLN-GVD---IYSLVTENIQW 165 (316)
T ss_dssp EEET--T-----SS-----SEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETT-SCC---EEEEECSSCSC
T ss_pred EEeC--C-----CC-----ceEEEEECCCCCcceEEeCCCCCEEEEEccC-CCCeEEEEcCC-CCC---eEEEEECCCCC
Confidence 4554 3 22 3333332221455678999988888887642 22589999987 443 344432 2234
Q ss_pred ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-CCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497 486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEGSGDVDRERINHVCFSADGEWLLFTANLGA 564 (642)
Q Consensus 486 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~ 564 (642)
...++++|+++.||++.... ..|+++|+++...+.+.... ... .+..+++ |+..||++....
T Consensus 166 P~gla~d~~~~~lY~~D~~~-------~~I~~~d~dg~~~~~~~~~~~~~~-------~P~giav--~~~~ly~~d~~~- 228 (316)
T 1ijq_A 166 PNGITLDLLSGRLYWVDSKL-------HSISSIDVNGGNRKTILEDEKRLA-------HPFSLAV--FEDKVFWTDIIN- 228 (316)
T ss_dssp EEEEEEETTTTEEEEEETTT-------TEEEEEETTSCSCEEEEECTTTTS-------SEEEEEE--ETTEEEEEETTT-
T ss_pred ceEEEEeccCCEEEEEECCC-------CeEEEEecCCCceEEEeecCCccC-------CcEEEEE--ECCEEEEEECCC-
Confidence 46789999999999987654 35999999987777665421 111 3345555 467788877443
Q ss_pred cccCCCCCCCCCCCCCcEEEEEcC-CCceeeccC
Q 039497 565 VMAEPVSWPNQFQPYGDLYVVKLD-GSGLRRLTW 597 (642)
Q Consensus 565 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~lt~ 597 (642)
..|++++.. +...+.+..
T Consensus 229 ---------------~~V~~~~~~~g~~~~~i~~ 247 (316)
T 1ijq_A 229 ---------------EAIFSANRLTGSDVNLLAE 247 (316)
T ss_dssp ---------------TEEEEEETTTCCCCEEEEC
T ss_pred ---------------CeEEEEeCCCCcceEEEec
Confidence 289999874 444555543
No 236
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.64 E-value=8.2e-06 Score=83.66 Aligned_cols=199 Identities=8% Similarity=0.037 Sum_probs=131.4
Q ss_pred EEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCC
Q 039497 343 LIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNRE 421 (642)
Q Consensus 343 ~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 421 (642)
+|+|.. ...|+.+++++.....+.. ...+..+.|++.+..|+++... ... |+.+.. + +..
T Consensus 85 ~ll~~~----~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~------~~~--I~~~~~--~-----g~~ 145 (400)
T 3p5b_L 85 YLFFTN----RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS------QRM--ICSTQL--D-----RAH 145 (400)
T ss_dssp EEEEEE----TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETT------TTE--EEEEEC-----------
T ss_pred eeEEec----cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecC------CCe--EEEEEc--c-----cCC
Confidence 455643 3689999999887666655 4567789999999999998732 334 444444 2 110
Q ss_pred ccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccceeEecCCCEEEE
Q 039497 422 EIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPSWSPKGDLIAF 500 (642)
Q Consensus 422 ~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~ 500 (642)
. ......+..........+++.+.++.|+++... ...|+++++++... +.+.. .......++++|.+.+||+
T Consensus 146 ~-~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~--~~~I~~~~~~g~~~----~~l~~~~~~~P~~iavdp~~g~ly~ 218 (400)
T 3p5b_L 146 G-VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADTKGVKR----KTLFRENGSKPRAIVVDPVHGFMYW 218 (400)
T ss_dssp ---CCCEEEECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEECTTTCSE----EEEEECSSCCEEEEEEETTTTEEEE
T ss_pred C-CCcceEEEeCCCCCcccEEEEecCCceEEEECC--CCeEEEEeCCCCce----EEEEeCCCCCcceEEEecccCeEEE
Confidence 0 002233332221345667888878888888753 34899999985543 44432 2233456799998888888
Q ss_pred EecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCC
Q 039497 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYG 580 (642)
Q Consensus 501 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 580 (642)
+.... ...|+++++++...+.+...... .+..+++++++++||++.... .
T Consensus 219 td~~~------~~~I~~~~~dG~~~~~~~~~~l~--------~P~glavd~~~~~lY~aD~~~----------------~ 268 (400)
T 3p5b_L 219 TDWGT------PAKIKKGGLNGVDIYSLVTENIQ--------WPNGITLDLLSGRLYWVDSKL----------------H 268 (400)
T ss_dssp EECSS------SCCEEEEETTSCSCEEEECSSCS--------CEEEEEEETTTTEEEEEETTT----------------T
T ss_pred EeCCC------CCEEEEEeCCCCccEEEEECCCC--------ceEEEEEEeCCCEEEEEECCC----------------C
Confidence 87432 23599999998877766543322 457899999999999987543 2
Q ss_pred cEEEEEcCCCceeeccC
Q 039497 581 DLYVVKLDGSGLRRLTW 597 (642)
Q Consensus 581 ~l~~~~~~~~~~~~lt~ 597 (642)
.|+++++++...+.+..
T Consensus 269 ~I~~~d~dG~~~~~~~~ 285 (400)
T 3p5b_L 269 SISSIDVNGGNRKTILE 285 (400)
T ss_dssp EEEEEETTSCCCEEEEE
T ss_pred EEEEEeCCCCccEEEEe
Confidence 89999999877665543
No 237
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.61 E-value=1.1e-05 Score=78.43 Aligned_cols=182 Identities=13% Similarity=0.132 Sum_probs=104.5
Q ss_pred ccEE-cCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 334 FPSF-SPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 334 ~~~~-spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
.+++ .++|+ |++... .....|++++.++.....+.. ......++++|+|+ |+++.. ....+.+|+ .
T Consensus 81 ~i~~~~~~g~-l~v~~~-~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~------~~~~i~~~~--~ 149 (286)
T 1q7f_A 81 RVAVVRNSGD-IIVTER-SPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGR-IIVVEC------KVMRVIIFD--Q 149 (286)
T ss_dssp EEEEETTTTE-EEEEEC-GGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSC-EEEEET------TTTEEEEEC--T
T ss_pred EEEEEcCCCe-EEEEcC-CCCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCC-EEEEEC------CCCEEEEEc--C
Confidence 3456 45664 444431 124678999966554333322 23567889999997 655552 234555544 3
Q ss_pred ecCCCCCCCCCccccceEEccc-cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC--Cccc
Q 039497 411 QLDPSDDNNREEIPCDVKILTK-EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP--WIDT 487 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~--~~~~ 487 (642)
+ +. ....+.. ........++++|||+ |+++.. ....|++++.+ |+. +..+.... ....
T Consensus 150 --~------g~----~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~--~~~~i~~~~~~-g~~---~~~~~~~g~~~~p~ 210 (286)
T 1q7f_A 150 --N------GN----VLHKFGCSKHLEFPNGVVVNDKQE-IFISDN--RAHCVKVFNYE-GQY---LRQIGGEGITNYPI 210 (286)
T ss_dssp --T------SC----EEEEEECTTTCSSEEEEEECSSSE-EEEEEG--GGTEEEEEETT-CCE---EEEESCTTTSCSEE
T ss_pred --C------CC----EEEEeCCCCccCCcEEEEECCCCC-EEEEEC--CCCEEEEEcCC-CCE---EEEEccCCccCCCc
Confidence 2 21 3333321 1113456789999997 555543 23479999986 443 35554321 3456
Q ss_pred ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEE
Q 039497 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560 (642)
Q Consensus 488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~ 560 (642)
.++++|+|+ |+++..... ..|.+++.++.....+....... .+..++++|||+ |+++.
T Consensus 211 ~i~~d~~G~-l~v~~~~~~------~~i~~~~~~g~~~~~~~~~~~~~-------~~~~i~~~~~g~-l~vs~ 268 (286)
T 1q7f_A 211 GVGINSNGE-ILIADNHNN------FNLTIFTQDGQLISALESKVKHA-------QCFDVALMDDGS-VVLAS 268 (286)
T ss_dssp EEEECTTCC-EEEEECSSS------CEEEEECTTSCEEEEEEESSCCS-------CEEEEEEETTTE-EEEEE
T ss_pred EEEECCCCC-EEEEeCCCC------EEEEEECCCCCEEEEEcccCCCC-------cceeEEECCCCc-EEEEC
Confidence 679999997 444443221 14999998776665554422221 345789999996 55554
No 238
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.58 E-value=3.8e-06 Score=81.46 Aligned_cols=204 Identities=14% Similarity=0.101 Sum_probs=121.3
Q ss_pred CCceeEEEEECCCCCeeEEee-c--CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccce
Q 039497 351 ELNAGIKIAKSDGSKRWTLIK-D--RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDV 427 (642)
Q Consensus 351 ~~~~~l~~~d~~~~~~~~l~~-~--~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 427 (642)
.....|+++|.++++...... . .....+.++|||+.|+ .. ... ++.++. + +. ..
T Consensus 12 ~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~--------~~~--V~~~d~--~-----G~-----~~ 68 (276)
T 3no2_A 12 SGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SY--------SKG--AKMITR--D-----GR-----EL 68 (276)
T ss_dssp TTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-EC--------BSE--EEEECT--T-----SC-----EE
T ss_pred CCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eC--------CCC--EEEECC--C-----CC-----EE
Confidence 345788899996776544333 2 3578889999998666 32 222 333433 2 12 34
Q ss_pred EEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC------CcccceeEecCCCEEEEE
Q 039497 428 KILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP------WIDTMPSWSPKGDLIAFS 501 (642)
Q Consensus 428 ~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~------~~~~~~~~spdG~~l~~~ 501 (642)
..+..........+.++|||+.|+..+.. ...|+.++.+ |+. +..+.-.. .....+...++|++|+..
T Consensus 69 W~~~~~~~~~~~~~~~~~dG~~lv~~~~~--~~~v~~vd~~-Gk~---l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~ 142 (276)
T 3no2_A 69 WNIAAPAGCEMQTARILPDGNALVAWCGH--PSTILEVNMK-GEV---LSKTEFETGIERPHAQFRQINKNKKGNYLVPL 142 (276)
T ss_dssp EEEECCTTCEEEEEEECTTSCEEEEEEST--TEEEEEECTT-SCE---EEEEEECCSCSSGGGSCSCCEECTTSCEEEEE
T ss_pred EEEcCCCCccccccEECCCCCEEEEecCC--CCEEEEEeCC-CCE---EEEEeccCCCCcccccccCceECCCCCEEEEe
Confidence 44443221244567899999988876631 4578888875 654 33332111 122345788999977655
Q ss_pred ecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCc
Q 039497 502 SNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGD 581 (642)
Q Consensus 502 ~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (642)
.... .|+.+|.+++........ . .+..+.+.++|..|+..... ..
T Consensus 143 ~~~~--------~v~~~d~~G~~~w~~~~~---~-------~~~~~~~~~~g~~~v~~~~~-----------------~~ 187 (276)
T 3no2_A 143 FATS--------EVREIAPNGQLLNSVKLS---G-------TPFSSAFLDNGDCLVACGDA-----------------HC 187 (276)
T ss_dssp TTTT--------EEEEECTTSCEEEEEECS---S-------CCCEEEECTTSCEEEECBTT-----------------SE
T ss_pred cCCC--------EEEEECCCCCEEEEEECC---C-------CccceeEcCCCCEEEEeCCC-----------------Ce
Confidence 4433 499999984443333321 1 23456778999877654432 27
Q ss_pred EEEEEcCCC-ceeeccCCC------CCCCCcEEecCCceEEeec
Q 039497 582 LYVVKLDGS-GLRRLTWNG------YENGTPAWHPGNQLDLGKL 618 (642)
Q Consensus 582 l~~~~~~~~-~~~~lt~~~------~~~~~~~~s~dg~~~~~~~ 618 (642)
|+.+|.+++ .+-++.... .....+...++|..+++..
T Consensus 188 v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 188 FVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 999998844 444554321 1124556678999888874
No 239
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.57 E-value=1.1e-05 Score=79.47 Aligned_cols=223 Identities=12% Similarity=0.065 Sum_probs=125.5
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecC
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD 413 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 413 (642)
.++|+++|+ |++... ....|++++.++..............+++++||+ |+++... .....++.++. .
T Consensus 36 gia~~~~g~-lyv~d~--~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~-l~vad~~------~~~~~v~~~d~--~ 103 (306)
T 2p4o_A 36 NLASAPDGT-IFVTNH--EVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGD-LVATGWN------ADSIPVVSLVK--S 103 (306)
T ss_dssp EEEECTTSC-EEEEET--TTTEEEEECTTCCEEEEEECSSEEEEEEECTTSC-EEEEEEC------TTSCEEEEEEC--T
T ss_pred eEEECCCCC-EEEEeC--CCCeEEEECCCCceEEEEeCCCCceeEEEcCCCc-EEEEecc------CCcceEEEEcC--C
Confidence 568999998 555542 3467999998875433333355677889999998 5555521 22345666654 2
Q ss_pred CCCCCCCCccccceEEccccC-CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee----C---C-CCC-
Q 039497 414 PSDDNNREEIPCDVKILTKEE-TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ----L---T-DGP- 483 (642)
Q Consensus 414 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~----l---~-~~~- 483 (642)
++ +.+.+.... ......++..+++ .+++.... ...||++|..+++. .+.. + . ...
T Consensus 104 -----~g-----~~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~--~g~i~~~d~~~~~~--~v~~~~~~~~~~~~~~~~ 168 (306)
T 2p4o_A 104 -----DG-----TVETLLTLPDAIFLNGITPLSDT-QYLTADSY--RGAIWLIDVVQPSG--SIWLEHPMLARSNSESVF 168 (306)
T ss_dssp -----TS-----CEEEEEECTTCSCEEEEEESSSS-EEEEEETT--TTEEEEEETTTTEE--EEEEECGGGSCSSTTCCS
T ss_pred -----CC-----eEEEEEeCCCccccCcccccCCC-cEEEEECC--CCeEEEEeCCCCcE--eEEEECCccccccccCCC
Confidence 23 333332211 1222334445544 45554432 34899999876531 0110 0 0 011
Q ss_pred CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC-Cce---EEeeecCCCCCCCcccccccceEEcCCCCEEEEE
Q 039497 484 WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG-SGL---RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559 (642)
Q Consensus 484 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~-~~~---~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~ 559 (642)
..... .+|||++||+...... .|+++++++ +.. +.+... . .+..+++++||+ |+++
T Consensus 169 ~~png--is~dg~~lyv~d~~~~-------~I~~~~~~~~g~~~~~~~~~~~---~-------~P~gi~vd~dG~-l~va 228 (306)
T 2p4o_A 169 PAANG--LKRFGNFLYVSNTEKM-------LLLRIPVDSTDKPGEPEIFVEQ---T-------NIDDFAFDVEGN-LYGA 228 (306)
T ss_dssp CSEEE--EEEETTEEEEEETTTT-------EEEEEEBCTTSCBCCCEEEEES---C-------CCSSEEEBTTCC-EEEE
T ss_pred CcCCC--cCcCCCEEEEEeCCCC-------EEEEEEeCCCCCCCccEEEecc---C-------CCCCeEECCCCC-EEEE
Confidence 11122 3999999998876543 599999875 322 222221 1 346789999996 5444
Q ss_pred EecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee--eccCCCCCCCCcEEe---cCC-ceEEeecC
Q 039497 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR--RLTWNGYENGTPAWH---PGN-QLDLGKLR 619 (642)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~lt~~~~~~~~~~~s---~dg-~~~~~~~~ 619 (642)
.... ..|.+++.++.... .+.........++|. ||+ .+|++...
T Consensus 229 ~~~~----------------~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 229 THIY----------------NSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CBTT----------------CCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred eCCC----------------CeEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 4322 27999998754321 233222345678998 885 55666543
No 240
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.55 E-value=2.9e-05 Score=76.78 Aligned_cols=204 Identities=11% Similarity=0.051 Sum_probs=130.5
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCe-eEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR-WTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~-~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
.+.|.+.++.|+++.. ....|++++++++.. ..+.. -.....+++.+.+..|+++.. .... |..++.
T Consensus 39 ~ld~d~~~~~lyw~D~--~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~------~~~~--I~~~~~ 108 (318)
T 3sov_A 39 AVDFVFSHGLIYWSDV--SEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDS------ETNR--IEVSNL 108 (318)
T ss_dssp EEEEEGGGTEEEEEET--TTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEET------TTTE--EEEEET
T ss_pred EEEEEeCCCEEEEEEC--CCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEEC------CCCE--EEEEEC
Confidence 4578887788888763 356899999988753 22222 245667888888888988873 2344 444544
Q ss_pred ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-CCCCcccce
Q 039497 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMP 489 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-~~~~~~~~~ 489 (642)
+ +. ..+.+..........+++.|.+.+|+++... ....|+++++++.. .+.+. ..-.....+
T Consensus 109 --d-----G~-----~~~~l~~~~~~~P~giavdp~~g~ly~td~~-~~~~I~r~~~dG~~----~~~~~~~~l~~Pngl 171 (318)
T 3sov_A 109 --D-----GS-----LRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSS----RFIIINSEIYWPNGL 171 (318)
T ss_dssp --T-----SC-----SCEEEECSSCSSEEEEEEEGGGTEEEEEECS-SSCEEEEEETTSCS----CEEEECSSCSCEEEE
T ss_pred --C-----CC-----cEEEEEeCCCCCccEEEEeCCCCEEEEEecC-CCCEEEEEEcCCCC----eEEEEECCCCCccEE
Confidence 3 22 2333332222455678999988888887642 24589999998443 24442 322344678
Q ss_pred eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCC
Q 039497 490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEP 569 (642)
Q Consensus 490 ~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~ 569 (642)
+++|+++.||++.... ..|+++++++...+.+..... . .+..+++ |+..||++....
T Consensus 172 avd~~~~~lY~aD~~~-------~~I~~~d~dG~~~~~~~~~~~-~-------~P~glav--~~~~lywtd~~~------ 228 (318)
T 3sov_A 172 TLDYEEQKLYWADAKL-------NFIHKSNLDGTNRQAVVKGSL-P-------HPFALTL--FEDILYWTDWST------ 228 (318)
T ss_dssp EEETTTTEEEEEETTT-------TEEEEEETTSCSCEEEECSCC-S-------CEEEEEE--ETTEEEEEETTT------
T ss_pred EEeccCCEEEEEECCC-------CEEEEEcCCCCceEEEecCCC-C-------CceEEEE--eCCEEEEEecCC------
Confidence 9999999999997654 359999999877776654221 2 3445555 566788875432
Q ss_pred CCCCCCCCCCCcEEEEEcC-CCceeeccC
Q 039497 570 VSWPNQFQPYGDLYVVKLD-GSGLRRLTW 597 (642)
Q Consensus 570 ~~~~~~~~~~~~l~~~~~~-~~~~~~lt~ 597 (642)
..|++++.. +...+.|..
T Consensus 229 ----------~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 229 ----------HSILACNKYTGEGLREIHS 247 (318)
T ss_dssp ----------TEEEEEETTTCCSCEEEEC
T ss_pred ----------CeEEEEECCCCCceEEEeC
Confidence 289999985 444444443
No 241
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.53 E-value=2.9e-05 Score=75.80 Aligned_cols=216 Identities=13% Similarity=0.130 Sum_probs=127.5
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
.+.++++|+ |.+.. .....|++++.+ ++...... ...+..+.++++|+ ++++.. .... |+.++.
T Consensus 19 ~i~~d~~g~-l~v~~--~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~------~~~~--i~~~~~ 85 (299)
T 2z2n_A 19 GITVSDKGK-VWITQ--HKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGE-VWFTEN------AANK--IGRITK 85 (299)
T ss_dssp EEEECTTSC-EEEEE--TTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSC-EEEEET------TTTE--EEEECT
T ss_pred ceEECCCCC-EEEEe--cCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCC-EEEeCC------CCCe--EEEECC
Confidence 446788887 44433 224679999988 55554432 34567888999987 555542 1233 444444
Q ss_pred ecCCCCCCCCCccccceEEcccc-CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC--CCCCCccc
Q 039497 411 QLDPSDDNNREEIPCDVKILTKE-ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL--TDGPWIDT 487 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l--~~~~~~~~ 487 (642)
+ + ....+... .......+++.|||+ |+++... ...|++++. +|+. ..+ ........
T Consensus 86 --~------g-----~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~--~~~i~~~d~-~g~~----~~~~~~~~~~~~~ 144 (299)
T 2z2n_A 86 --K------G-----IIKEYTLPNPDSAPYGITEGPNGD-IWFTEMN--GNRIGRITD-DGKI----REYELPNKGSYPS 144 (299)
T ss_dssp --T------S-----CEEEEECSSTTCCEEEEEECTTSC-EEEEETT--TTEEEEECT-TCCE----EEEECSSTTCCEE
T ss_pred --C------C-----cEEEEeCCCcCCCceeeEECCCCC-EEEEecC--CceEEEECC-CCCE----EEecCCCCCCCCc
Confidence 1 2 22222211 113556788999986 4444432 347999998 5663 332 22223456
Q ss_pred ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCccc
Q 039497 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA 567 (642)
Q Consensus 488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~ 567 (642)
.+.++++|+ |++..... ..|+++|. +++...+....... .+..+.++++|+ |+++....
T Consensus 145 ~i~~~~~g~-l~v~~~~~-------~~i~~~~~-~g~~~~~~~~~~~~-------~~~~i~~~~~g~-l~v~~~~~---- 203 (299)
T 2z2n_A 145 FITLGSDNA-LWFTENQN-------NAIGRITE-SGDITEFKIPTPAS-------GPVGITKGNDDA-LWFVEIIG---- 203 (299)
T ss_dssp EEEECTTSC-EEEEETTT-------TEEEEECT-TCCEEEEECSSTTC-------CEEEEEECTTSS-EEEEETTT----
T ss_pred eEEEcCCCC-EEEEeCCC-------CEEEEEcC-CCcEEEeeCCCCCC-------cceeEEECCCCC-EEEEccCC----
Confidence 778999996 55554432 24999999 66665543222112 356788999998 55554322
Q ss_pred CCCCCCCCCCCCCcEEEEEcCCCceeeccC--CCCCCCCcEEecCCceEEee
Q 039497 568 EPVSWPNQFQPYGDLYVVKLDGSGLRRLTW--NGYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 568 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~--~~~~~~~~~~s~dg~~~~~~ 617 (642)
..|+.++. .+....+.. .......++++++|+++++.
T Consensus 204 ------------~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 242 (299)
T 2z2n_A 204 ------------NKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTE 242 (299)
T ss_dssp ------------TEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred ------------ceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEec
Confidence 27999998 555544422 22344678899999888775
No 242
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.52 E-value=5.4e-05 Score=77.54 Aligned_cols=204 Identities=10% Similarity=0.011 Sum_probs=129.1
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCC----CeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGS----KRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR 407 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~----~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~ 407 (642)
.++|++.++.|+++.. ....|+.+++++. ....+.. ......+++.+.++.||++... .. .|..
T Consensus 116 ~l~~d~~~~~lywsD~--~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~------~~--~I~~ 185 (400)
T 3p5b_L 116 ALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------LG--TVSV 185 (400)
T ss_dssp EEEEETTTTEEEEEET--TTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETT------TT--EEEE
T ss_pred EEeeeeccCceEEEec--CCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECC------CC--eEEE
Confidence 5688888888888763 3467999998873 3333333 3446678888888889888732 33 4455
Q ss_pred EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcc
Q 039497 408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWID 486 (642)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~ 486 (642)
++. + ++ ..+.+..........+++.|.+.+|+++... ....|+++++++... +.+.. .-...
T Consensus 186 ~~~--~-----g~-----~~~~l~~~~~~~P~~iavdp~~g~ly~td~~-~~~~I~~~~~dG~~~----~~~~~~~l~~P 248 (400)
T 3p5b_L 186 ADT--K-----GV-----KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDI----YSLVTENIQWP 248 (400)
T ss_dssp ECT--T-----TC-----SEEEEEECSSCCEEEEEEETTTTEEEEEECS-SSCCEEEEETTSCSC----EEEECSSCSCE
T ss_pred EeC--C-----CC-----ceEEEEeCCCCCcceEEEecccCeEEEEeCC-CCCEEEEEeCCCCcc----EEEEECCCCce
Confidence 555 3 22 3333333221345678999988888887642 235899999985442 44432 22345
Q ss_pred cceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCC-CCCCCcccccccceEEcCCCCEEEEEEecCCc
Q 039497 487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP-EGSGDVDRERINHVCFSADGEWLLFTANLGAV 565 (642)
Q Consensus 487 ~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~ 565 (642)
..++++|++++||++.... ..|+++|+++...+.+..... .. .+. .+..++..||++....
T Consensus 249 ~glavd~~~~~lY~aD~~~-------~~I~~~d~dG~~~~~~~~~~~~l~-------~P~--gl~v~~~~lywtd~~~-- 310 (400)
T 3p5b_L 249 NGITLDLLSGRLYWVDSKL-------HSISSIDVNGGNRKTILEDEKRLA-------HPF--SLAVFEDKVFWTDIIN-- 310 (400)
T ss_dssp EEEEEETTTTEEEEEETTT-------TEEEEEETTSCCCEEEEECSSTTS-------SEE--EEEEETTEEEEEESSS--
T ss_pred EEEEEEeCCCEEEEEECCC-------CEEEEEeCCCCccEEEEeCCCCCC-------CCE--EEEEeCCEEEEecCCC--
Confidence 6789999999999987654 359999999887777654211 11 223 3444777888887543
Q ss_pred ccCCCCCCCCCCCCCcEEEEEc-CCCceeecc
Q 039497 566 MAEPVSWPNQFQPYGDLYVVKL-DGSGLRRLT 596 (642)
Q Consensus 566 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~lt 596 (642)
..|++++. ++.....|.
T Consensus 311 --------------~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 311 --------------EAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp --------------CSEEEEESSSCCCCEEEE
T ss_pred --------------CeEEEEEcCCCCceEEEe
Confidence 28999984 454555554
No 243
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.51 E-value=3e-05 Score=85.95 Aligned_cols=193 Identities=8% Similarity=0.022 Sum_probs=128.7
Q ss_pred ceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497 353 NAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT 431 (642)
Q Consensus 353 ~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 431 (642)
...|..+++++.....+.. ......+.|.+.+..||++... ... |+.+.. + +.........+.
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~------~~~--I~~~~l--~------g~~~~~~~~~vi 466 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS------QRM--ICSTQL--D------RAHGVSSYDTVI 466 (791)
T ss_dssp BSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETT------TTE--EEEEEC----------------CEEEE
T ss_pred ccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeecc------cee--EEEEec--c------CCCCCcceeEEE
Confidence 4678889998877666655 4566788999988889888742 333 444444 2 100000122232
Q ss_pred ccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccceeEecCCCEEEEEecCCCCCCC
Q 039497 432 KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPSWSPKGDLIAFSSNRHNPDNV 510 (642)
Q Consensus 432 ~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~ 510 (642)
.........+++.+.++.|+++... ...|+++++++.. .+.|.. .......++++|.+.+||++....
T Consensus 467 ~~~l~~P~GLAvD~~~~~LY~tD~~--~~~I~v~~ldG~~----~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~----- 535 (791)
T 3m0c_C 467 SRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADTKGVK----RKTLFRENGSKPRAIVVDPVHGFMYWTDWGT----- 535 (791)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSSS----EEEEEECTTCCEEEEEEETTTTEEEEEECSS-----
T ss_pred ecCCCCcceeeeeecCCcEEEEecC--CCeEEEEeCCCCe----EEEEEeCCCCCcceEEEecCCCCEEEecCCC-----
Confidence 2121455678999899999988753 3489999998544 344432 223456789999988898887432
Q ss_pred CceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497 511 EAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590 (642)
Q Consensus 511 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 590 (642)
...|+++++++...+.+...... .+..+++++++.+||++.... ..|++++++|.
T Consensus 536 -~~~I~~~~~dG~~~~~lv~~~l~--------~P~GLavD~~~~~LYwaD~~~----------------~~I~~~d~dG~ 590 (791)
T 3m0c_C 536 -PAKIKKGGLNGVDIYSLVTENIQ--------WPNGITLDLLSGRLYWVDSKL----------------HSISSIDVNGG 590 (791)
T ss_dssp -SCEEEEEETTSCCEEEEECSSCS--------CEEEEEEETTTTEEEEEETTT----------------TEEEEEETTSC
T ss_pred -CCeEEEEecCCCceEEEEeCCCC--------CceEEEEecCCCeEEEEeCCC----------------CcEEEEecCCC
Confidence 24699999998877766653322 467799999999999986443 28999999998
Q ss_pred ceeeccC
Q 039497 591 GLRRLTW 597 (642)
Q Consensus 591 ~~~~lt~ 597 (642)
..+.+..
T Consensus 591 ~~~~v~~ 597 (791)
T 3m0c_C 591 NRKTILE 597 (791)
T ss_dssp SCEEEEE
T ss_pred ceEEEec
Confidence 7766654
No 244
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.50 E-value=9.8e-06 Score=81.38 Aligned_cols=233 Identities=12% Similarity=0.047 Sum_probs=129.8
Q ss_pred ccEEcCCCCEEEEEec-CCCceeEEEEECCCCCeeEEee--------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEE
Q 039497 334 FPSFSPDGGLIVFNHD-FELNAGIKIAKSDGSKRWTLIK--------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQ 404 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~-~~~~~~l~~~d~~~~~~~~l~~--------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 404 (642)
.++++|+|+.++.... ..+...|+.++ .++...... -..+..+.++++|+ |+++..+. .......
T Consensus 21 ~va~~~~g~~~v~~~~~~~~~~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~-~~~~~~~-- 94 (343)
T 2qe8_A 21 NITLTPDGRLFLSLHQFYQPEMQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGN-QSKSVPK-- 94 (343)
T ss_dssp EEEECTTSCEEEEECGGGCCSCSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHH-HHTSCCE--
T ss_pred eEEECCCCCEEEEeCCCCCCceEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCC-CcCCCCe--
Confidence 5578999985433222 12225788888 333332211 13466789999976 66665210 0000233
Q ss_pred EEEEEeecCCCCCCCCCccccceEEccccC-----CCCccCcEECCCCCeEEEEeCCC-CceeEEEEECCCCccccceee
Q 039497 405 IARVSFQLDPSDDNNREEIPCDVKILTKEE-----TGNNAFPSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQ 478 (642)
Q Consensus 405 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~SpDg~~l~~~~~~~-g~~~l~~~d~~~g~~~~~~~~ 478 (642)
|+.++. + ++. ..+.+.... ......++++|++..++++.... +...|+++|+.+|+. .+.
T Consensus 95 i~~~d~--~-----tg~----~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~---~r~ 160 (343)
T 2qe8_A 95 LVAWDT--L-----NNQ----LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA---ARV 160 (343)
T ss_dssp EEEEET--T-----TTE----EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE---EEE
T ss_pred EEEEEC--C-----CCe----EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE---EEE
Confidence 444444 2 221 123332111 02345688998877776664311 345899999988874 333
Q ss_pred CCCCC-----------------------------CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC---CCc--
Q 039497 479 LTDGP-----------------------------WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD---GSG-- 524 (642)
Q Consensus 479 l~~~~-----------------------------~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~---~~~-- 524 (642)
+..+. .....++|||||+.||+...... .||.++.+ .+.
T Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-------~l~~~~~~~~~~~~~~ 233 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-------SMYRIKSADLSNLQLT 233 (343)
T ss_dssp CTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-------EEEEEEHHHHTCTTCC
T ss_pred ecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-------eEEEEEHHHhcCCCCC
Confidence 32100 11345799999999998876542 58888753 111
Q ss_pred -------eEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccC
Q 039497 525 -------LRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW 597 (642)
Q Consensus 525 -------~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~ 597 (642)
...+-. .+ .+..+++++||. |+++.... ..|++|+...++...+..
T Consensus 234 ~~~~~~~~~~~g~---~g-------~pdgia~d~~G~-l~va~~~~----------------~~V~~~d~~~G~~~~~~~ 286 (343)
T 2qe8_A 234 DAELGSKIERYSE---KP-------ICDGISIDKDHN-IYVGDLAH----------------SAIGVITSADRAYKLLVT 286 (343)
T ss_dssp HHHHHTTCEEEEE---CC-------SCSCEEECTTCC-EEEEEGGG----------------TEEEEEETTTTEEEEEEE
T ss_pred hhhhhcceEeccc---CC-------CCceEEECCCCC-EEEEccCC----------------CeEEEEECCCCCEEEEEE
Confidence 111111 11 345689999986 55554332 289999983445544443
Q ss_pred C--CCCCCCcEEecCCceEEeecCC
Q 039497 598 N--GYENGTPAWHPGNQLDLGKLRL 620 (642)
Q Consensus 598 ~--~~~~~~~~~s~dg~~~~~~~~~ 620 (642)
. ......++|+++|+++++..+.
T Consensus 287 ~~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 287 DEKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp CGGGSCEEEEEECTTSCEEEEECCG
T ss_pred CCceecCCeeEECCCCcEEEEeCcc
Confidence 2 2335688999999888776544
No 245
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.50 E-value=6.1e-05 Score=73.43 Aligned_cols=215 Identities=11% Similarity=0.093 Sum_probs=128.0
Q ss_pred cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
+.++++|+ |++.. .....|++++.+ ++...... ...+..+.+.++|+ |+++.. ... .|+.++.
T Consensus 67 i~~~~~g~-l~v~~--~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~------~~~--~i~~~~~- 132 (300)
T 2qc5_A 67 LIVSSLGD-IWFTE--NGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGD-IWFTQL------NGD--RIGKLTA- 132 (300)
T ss_dssp EEECTTSC-EEEEE--TTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTC-EEEEET------TTT--EEEEECT-
T ss_pred EEECCCCC-EEEEe--cCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCC-EEEEcc------CCC--eEEEECC-
Confidence 46678887 44433 224678999988 55444432 24567788888887 555542 122 3455544
Q ss_pred cCCCCCCCCCccccceEEc--cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC--CCCCccc
Q 039497 412 LDPSDDNNREEIPCDVKIL--TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT--DGPWIDT 487 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~--~~~~~~~ 487 (642)
.+ ....+ .... .....+.+.++|+ |+++... ...|++++. +++. ..+. .......
T Consensus 133 -------~g-----~~~~~~~~~~~-~~~~~i~~d~~g~-l~v~~~~--~~~i~~~~~-~g~~----~~~~~~~~~~~~~ 191 (300)
T 2qc5_A 133 -------DG-----TIYEYDLPNKG-SYPAFITLGSDNA-LWFTENQ--NNSIGRITN-TGKL----EEYPLPTNAAAPV 191 (300)
T ss_dssp -------TS-----CEEEEECSSTT-CCEEEEEECTTSS-EEEEETT--TTEEEEECT-TCCE----EEEECSSTTCCEE
T ss_pred -------CC-----CEEEccCCCCC-CCceeEEECCCCC-EEEEecC--CCeEEEECC-CCcE----EEeeCCCCCCCcc
Confidence 22 22222 2112 3456788999998 6555542 347999998 5664 3332 2223445
Q ss_pred ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCccc
Q 039497 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA 567 (642)
Q Consensus 488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~ 567 (642)
.+.++++|+ |++..... ..|++++. .++...+....... .+..+.++++|+ |+++....
T Consensus 192 ~i~~d~~g~-l~v~~~~~-------~~i~~~~~-~g~~~~~~~~~~~~-------~~~~i~~d~~g~-l~v~~~~~---- 250 (300)
T 2qc5_A 192 GITSGNDGA-LWFVEIMG-------NKIGRITT-TGEISEYDIPTPNA-------RPHAITAGKNSE-IWFTEWGA---- 250 (300)
T ss_dssp EEEECTTSS-EEEEETTT-------TEEEEECT-TCCEEEEECSSTTC-------CEEEEEECSTTC-EEEEETTT----
T ss_pred eEEECCCCC-EEEEccCC-------CEEEEEcC-CCcEEEEECCCCCC-------CceEEEECCCCC-EEEeccCC----
Confidence 678899986 55555433 24999998 44544443221122 456789999998 65555322
Q ss_pred CCCCCCCCCCCCCcEEEEEcCCCceeecc--CCCCCCCCcEEecCCceEEeec
Q 039497 568 EPVSWPNQFQPYGDLYVVKLDGSGLRRLT--WNGYENGTPAWHPGNQLDLGKL 618 (642)
Q Consensus 568 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lt--~~~~~~~~~~~s~dg~~~~~~~ 618 (642)
..|+.++.++ ....+. ........++++++|+++++..
T Consensus 251 ------------~~i~~~~~~g-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 251 ------------NQIGRITNDN-TIQEYQLQTENAEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp ------------TEEEEECTTS-CEEEEECCSTTCCCCCEEECTTSCEEEECS
T ss_pred ------------CeEEEECCCC-cEEEEECCccCCccceeEeCCCCCEEEEcc
Confidence 2799998854 444332 2234567889999999888765
No 246
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.50 E-value=5.5e-05 Score=83.89 Aligned_cols=206 Identities=10% Similarity=0.015 Sum_probs=130.0
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCC----CeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGS----KRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR 407 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~----~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~ 407 (642)
.+.+.+.+.+|++... ....|+++++++. ....+.. ......+++.+.++.||++... .. .|..
T Consensus 428 gl~~d~~~~~lY~sD~--~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~------~~--~I~v 497 (791)
T 3m0c_C 428 ALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------LG--TVSV 497 (791)
T ss_dssp EEEEETTTTEEEEEET--TTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT------TT--EEEE
T ss_pred EEeecccCCeeEEeec--cceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecC------CC--eEEE
Confidence 4577887777877663 3467999998874 2233332 3456778999999999988742 33 4555
Q ss_pred EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcc
Q 039497 408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWID 486 (642)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~ 486 (642)
++. + +. ..+.|..........+++.|.+.+|+++.... ...|+++++++.. .+.|.. .-...
T Consensus 498 ~~l--d-----G~-----~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~-~~~I~~~~~dG~~----~~~lv~~~l~~P 560 (791)
T 3m0c_C 498 ADT--K-----GV-----KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-PAKIKKGGLNGVD----IYSLVTENIQWP 560 (791)
T ss_dssp EET--T-----SS-----SEEEEEECTTCCEEEEEEETTTTEEEEEECSS-SCEEEEEETTSCC----EEEEECSSCSCE
T ss_pred EeC--C-----CC-----eEEEEEeCCCCCcceEEEecCCCCEEEecCCC-CCeEEEEecCCCc----eEEEEeCCCCCc
Confidence 555 3 22 33444332223466789999988998886422 2589999998544 344433 22345
Q ss_pred cceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcc
Q 039497 487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVM 566 (642)
Q Consensus 487 ~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~ 566 (642)
..+++++.+++||++.... ..|+++++++...+.+...... ....+++..++.+||++....
T Consensus 561 ~GLavD~~~~~LYwaD~~~-------~~I~~~d~dG~~~~~v~~~~~~--------l~~P~glav~~~~lYwtD~~~--- 622 (791)
T 3m0c_C 561 NGITLDLLSGRLYWVDSKL-------HSISSIDVNGGNRKTILEDEKR--------LAHPFSLAVFEDKVFWTDIIN--- 622 (791)
T ss_dssp EEEEEETTTTEEEEEETTT-------TEEEEEETTSCSCEEEEECTTT--------TSSEEEEEEETTEEEEEETTT---
T ss_pred eEEEEecCCCeEEEEeCCC-------CcEEEEecCCCceEEEecCCCc--------cCCCCEEEEeCCEEEEEECCC---
Confidence 6779999999999987543 3599999999887777643211 112234455777888887543
Q ss_pred cCCCCCCCCCCCCCcEEEEEcC-CCceeeccC
Q 039497 567 AEPVSWPNQFQPYGDLYVVKLD-GSGLRRLTW 597 (642)
Q Consensus 567 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~lt~ 597 (642)
..|++++.. +...+.|..
T Consensus 623 -------------~~I~~~dk~tG~~~~~l~~ 641 (791)
T 3m0c_C 623 -------------EAIFSANRLTGSDVNLLAE 641 (791)
T ss_dssp -------------TEEEEEETTTCCCCEEEEC
T ss_pred -------------CEEEEEeCCCCcceEEeec
Confidence 289999854 444555543
No 247
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.45 E-value=4.7e-05 Score=74.26 Aligned_cols=216 Identities=12% Similarity=0.128 Sum_probs=126.2
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
.+.++++|+ +++.. .....|++++.++ +...+.. ...+..+.++|+|+ |+++.. ....+ +.++.
T Consensus 61 ~i~~~~~g~-l~v~~--~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~------~~~~i--~~~d~ 127 (299)
T 2z2n_A 61 CLTISSDGE-VWFTE--NAANKIGRITKKG-IIKEYTLPNPDSAPYGITEGPNGD-IWFTEM------NGNRI--GRITD 127 (299)
T ss_dssp EEEECTTSC-EEEEE--TTTTEEEEECTTS-CEEEEECSSTTCCEEEEEECTTSC-EEEEET------TTTEE--EEECT
T ss_pred eEEECCCCC-EEEeC--CCCCeEEEECCCC-cEEEEeCCCcCCCceeeEECCCCC-EEEEec------CCceE--EEECC
Confidence 346788887 44433 2245788888873 3333332 33567788899886 555542 13344 44433
Q ss_pred ecCCCCCCCCCccccceEEcccc-CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC--CCCCCccc
Q 039497 411 QLDPSDDNNREEIPCDVKILTKE-ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL--TDGPWIDT 487 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l--~~~~~~~~ 487 (642)
+ + ....+... .......+++++||+ ++++.. ....|++++. +|+. ..+ ........
T Consensus 128 --~------g-----~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~--~~~~i~~~~~-~g~~----~~~~~~~~~~~~~ 186 (299)
T 2z2n_A 128 --D------G-----KIREYELPNKGSYPSFITLGSDNA-LWFTEN--QNNAIGRITE-SGDI----TEFKIPTPASGPV 186 (299)
T ss_dssp --T------C-----CEEEEECSSTTCCEEEEEECTTSC-EEEEET--TTTEEEEECT-TCCE----EEEECSSTTCCEE
T ss_pred --C------C-----CEEEecCCCCCCCCceEEEcCCCC-EEEEeC--CCCEEEEEcC-CCcE----EEeeCCCCCCcce
Confidence 1 2 22222211 113456788999985 555543 2347999998 6764 432 22223445
Q ss_pred ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCccc
Q 039497 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA 567 (642)
Q Consensus 488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~ 567 (642)
.+.++++|+ |++..... ..|++++. +++...+....... .+..+.++++|+ |+++....
T Consensus 187 ~i~~~~~g~-l~v~~~~~-------~~i~~~~~-~g~~~~~~~~~~~~-------~~~~i~~~~~g~-l~v~~~~~---- 245 (299)
T 2z2n_A 187 GITKGNDDA-LWFVEIIG-------NKIGRITT-SGEITEFKIPTPNA-------RPHAITAGAGID-LWFTEWGA---- 245 (299)
T ss_dssp EEEECTTSS-EEEEETTT-------TEEEEECT-TCCEEEEECSSTTC-------CEEEEEECSTTC-EEEEETTT----
T ss_pred eEEECCCCC-EEEEccCC-------ceEEEECC-CCcEEEEECCCCCC-------CceeEEECCCCC-EEEeccCC----
Confidence 678999998 55555432 24999999 66655543222122 456789999998 55554222
Q ss_pred CCCCCCCCCCCCCcEEEEEcCCCceeecc--CCCCCCCCcEEecCCceEEeec
Q 039497 568 EPVSWPNQFQPYGDLYVVKLDGSGLRRLT--WNGYENGTPAWHPGNQLDLGKL 618 (642)
Q Consensus 568 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lt--~~~~~~~~~~~s~dg~~~~~~~ 618 (642)
..|+.++.++ ....+. ........+++ ++|+++++..
T Consensus 246 ------------~~i~~~d~~g-~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~ 284 (299)
T 2z2n_A 246 ------------NKIGRLTSNN-IIEEYPIQIKSAEPHGICF-DGETIWFAME 284 (299)
T ss_dssp ------------TEEEEEETTT-EEEEEECSSSSCCEEEEEE-CSSCEEEEET
T ss_pred ------------ceEEEECCCC-ceEEEeCCCCCCccceEEe-cCCCEEEEec
Confidence 2799999854 444442 22334567788 9998888764
No 248
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.42 E-value=7.8e-05 Score=72.68 Aligned_cols=217 Identities=12% Similarity=0.085 Sum_probs=127.3
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
.+.++++|+ |.+.. .....|.+++.+ ++...+.. ...+..+.++++|+ |+++.. ... .|+.++.
T Consensus 24 ~i~~d~~g~-l~v~~--~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~------~~~--~v~~~d~ 90 (300)
T 2qc5_A 24 GITSSEDGK-VWFTQ--HKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGD-IWFTEN------GAN--KIGKLSK 90 (300)
T ss_dssp EEEECTTSC-EEEEE--TTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-EEEEET------TTT--EEEEECT
T ss_pred eeeECCCCC-EEEEc--CCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCC-EEEEec------CCC--eEEEECC
Confidence 346788887 44433 234678899988 55444433 24567788888887 555542 123 3444544
Q ss_pred ecCCCCCCCCCccccceEEcccc-CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee--CCCCCCccc
Q 039497 411 QLDPSDDNNREEIPCDVKILTKE-ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ--LTDGPWIDT 487 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~--l~~~~~~~~ 487 (642)
.+ ....+... .......+++.++|+ |+++... ...|++++.+ |+. .. +........
T Consensus 91 --------~g-----~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~--~~~i~~~~~~-g~~----~~~~~~~~~~~~~ 149 (300)
T 2qc5_A 91 --------KG-----GFTEYPLPQPDSGPYGITEGLNGD-IWFTQLN--GDRIGKLTAD-GTI----YEYDLPNKGSYPA 149 (300)
T ss_dssp --------TS-----CEEEEECSSTTCCEEEEEECSTTC-EEEEETT--TTEEEEECTT-SCE----EEEECSSTTCCEE
T ss_pred --------CC-----CeEEecCCCCCCCCccceECCCCC-EEEEccC--CCeEEEECCC-CCE----EEccCCCCCCCce
Confidence 22 22322211 113456678899986 4444432 3379999988 664 33 222223456
Q ss_pred ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCccc
Q 039497 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA 567 (642)
Q Consensus 488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~ 567 (642)
.+.++++|+ |++..... ..|++++. .++...+....... .+..+.++++|+ |+++....
T Consensus 150 ~i~~d~~g~-l~v~~~~~-------~~i~~~~~-~g~~~~~~~~~~~~-------~~~~i~~d~~g~-l~v~~~~~---- 208 (300)
T 2qc5_A 150 FITLGSDNA-LWFTENQN-------NSIGRITN-TGKLEEYPLPTNAA-------APVGITSGNDGA-LWFVEIMG---- 208 (300)
T ss_dssp EEEECTTSS-EEEEETTT-------TEEEEECT-TCCEEEEECSSTTC-------CEEEEEECTTSS-EEEEETTT----
T ss_pred eEEECCCCC-EEEEecCC-------CeEEEECC-CCcEEEeeCCCCCC-------CcceEEECCCCC-EEEEccCC----
Confidence 678999998 66665432 24999998 45555443222112 456788999996 55554332
Q ss_pred CCCCCCCCCCCCCcEEEEEcCCCceeecc--CCCCCCCCcEEecCCceEEeec
Q 039497 568 EPVSWPNQFQPYGDLYVVKLDGSGLRRLT--WNGYENGTPAWHPGNQLDLGKL 618 (642)
Q Consensus 568 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lt--~~~~~~~~~~~s~dg~~~~~~~ 618 (642)
..|++++.++ ....+. ........++++++|+++++..
T Consensus 209 ------------~~i~~~~~~g-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~ 248 (300)
T 2qc5_A 209 ------------NKIGRITTTG-EISEYDIPTPNARPHAITAGKNSEIWFTEW 248 (300)
T ss_dssp ------------TEEEEECTTC-CEEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred ------------CEEEEEcCCC-cEEEEECCCCCCCceEEEECCCCCEEEecc
Confidence 2699998844 443332 2223446788999998887763
No 249
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.35 E-value=3.1e-05 Score=72.64 Aligned_cols=188 Identities=13% Similarity=0.109 Sum_probs=113.1
Q ss_pred cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecC
Q 039497 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD 413 (642)
Q Consensus 335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 413 (642)
+.|+ |+ +|+......+...|.++|+++++...... .......-..+++++|+.+.. ..+.+.+++...
T Consensus 48 L~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw------~~~~v~v~D~~t--- 116 (262)
T 3nol_A 48 FFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTW------KNGLGFVWNIRN--- 116 (262)
T ss_dssp EEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEES------SSSEEEEEETTT---
T ss_pred EEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEe------eCCEEEEEECcc---
Confidence 4566 54 55554433456789999999998655444 444455556678889988874 255566655533
Q ss_pred CCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC--CCc---ccc
Q 039497 414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG--PWI---DTM 488 (642)
Q Consensus 414 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~--~~~---~~~ 488 (642)
.. ....+.... ....+++||+.|+.+. +...|+.+|..+.+. ...+.-. ... .+.
T Consensus 117 ------~~----~~~ti~~~~----eG~glt~dg~~L~~Sd---Gs~~i~~iDp~T~~v---~~~I~V~~~g~~~~~lNE 176 (262)
T 3nol_A 117 ------LR----QVRSFNYDG----EGWGLTHNDQYLIMSD---GTPVLRFLDPESLTP---VRTITVTAHGEELPELNE 176 (262)
T ss_dssp ------CC----EEEEEECSS----CCCCEEECSSCEEECC---SSSEEEEECTTTCSE---EEEEECEETTEECCCEEE
T ss_pred ------Cc----EEEEEECCC----CceEEecCCCEEEEEC---CCCeEEEEcCCCCeE---EEEEEeccCCccccccce
Confidence 21 344444322 2345668998876553 456899999998875 4444331 111 223
Q ss_pred eeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-CCCC---CCcccccccceEEcCCCCEEEEEEec
Q 039497 489 PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEGS---GDVDRERINHVCFSADGEWLLFTANL 562 (642)
Q Consensus 489 ~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~---~~~~~~~~~~~~~S~Dg~~l~~~~~~ 562 (642)
+.|. +| .|+...-. ...|.++|.++++........ .... ........+.++|+|++++|+++...
T Consensus 177 Le~~-~G-~lyan~w~-------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 177 LEWV-DG-EIFANVWQ-------TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEE-TT-EEEEEETT-------SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred eEEE-CC-EEEEEEcc-------CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 5676 67 46654432 235999999999876655431 1000 00000134679999999999888754
No 250
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.35 E-value=5.1e-06 Score=91.58 Aligned_cols=205 Identities=10% Similarity=-0.001 Sum_probs=124.2
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCC----CCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEE
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDG----SKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIA 406 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~----~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~ 406 (642)
..++|++++.+|+++.. ....|+++++++ .....+.. ......+++.+.+..||++.. .... |+
T Consensus 409 ~gla~d~~~~~Ly~sD~--~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~------~~~~--I~ 478 (699)
T 1n7d_A 409 VALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS------VLGT--VS 478 (699)
T ss_dssp CCCEEETTTTEEEECCT--TTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCT------TTSC--EE
T ss_pred EEEccccccCeEEEEec--CCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEec------cCCe--EE
Confidence 45789988887777543 346799999886 33222222 123456777777777877652 2334 44
Q ss_pred EEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-CCCCc
Q 039497 407 RVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWI 485 (642)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-~~~~~ 485 (642)
.++. + ++ ..+.+..........+++.|++.+|+++... ....|+++++++... +.+. ..-..
T Consensus 479 v~d~--d-----g~-----~~~~l~~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG~~~----~~l~~~~l~~ 541 (699)
T 1n7d_A 479 VADT--K-----GV-----KRKTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDI----YSLVTENIQW 541 (699)
T ss_dssp EEBS--S-----SC-----CEEEECCCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSSCCC----CEESCSSCSS
T ss_pred EEec--C-----CC-----ceEEEEeCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCCCCe----eEEEeCCCCC
Confidence 4544 3 22 3333333221445678999988888876532 225899998874332 3332 22234
Q ss_pred ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-CCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497 486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEGSGDVDRERINHVCFSADGEWLLFTANLGA 564 (642)
Q Consensus 486 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~ 564 (642)
...++|+|++++||++.... ..|+++++++...+.+.... ... .+..+++ |+..||++....
T Consensus 542 PnGlavd~~~~~LY~aD~~~-------~~I~~~d~dG~~~~~~~~~~~~~~-------~P~glav--d~~~lywtd~~~- 604 (699)
T 1n7d_A 542 PNGITLDLLSGRLYWVDSKL-------HSISSIDVNGGNRKTILEDEKRLA-------HPFSLAV--FEDKVFWTDIIN- 604 (699)
T ss_dssp CCCEEECTTTCCEEEEETTT-------TEEEEECSSSSCCEEECCCSSSCS-------SCCCCEE--ETTEEEEECSTT-
T ss_pred ccEEEEeccCCEEEEEecCC-------CeEEEEccCCCceEEEEecCCcCC-------CceEeEE--ECCEEEEEeCCC-
Confidence 56789999999999987654 35999999987766665321 111 2334544 566888877433
Q ss_pred cccCCCCCCCCCCCCCcEEEEEcCCCc-eeecc
Q 039497 565 VMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLT 596 (642)
Q Consensus 565 ~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt 596 (642)
..|++++..+++ ++.|.
T Consensus 605 ---------------~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 605 ---------------EAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp ---------------TCEEEEETTTEEEEECCC
T ss_pred ---------------CeEEEEEccCCCceEEee
Confidence 289999976554 44443
No 251
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.34 E-value=1.9e-05 Score=74.94 Aligned_cols=190 Identities=13% Similarity=0.039 Sum_probs=109.4
Q ss_pred ceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEe
Q 039497 375 AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRS 454 (642)
Q Consensus 375 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~ 454 (642)
...+.|+||+ .|+.++.. .+...+..+++.. +. ....+.-.. ......+..+|+.|+...
T Consensus 23 ~~Gl~~~~dg-~Lyvstg~----~~~s~v~~iD~~t---------g~----v~~~i~l~~--~~fgeGi~~~g~~lyv~t 82 (266)
T 2iwa_A 23 TQGLVYAEND-TLFESTGL----YGRSSVRQVALQT---------GK----VENIHKMDD--SYFGEGLTLLNEKLYQVV 82 (266)
T ss_dssp EEEEEECSTT-EEEEEECS----TTTCEEEEEETTT---------CC----EEEEEECCT--TCCEEEEEEETTEEEEEE
T ss_pred cccEEEeCCC-eEEEECCC----CCCCEEEEEECCC---------CC----EEEEEecCC--CcceEEEEEeCCEEEEEE
Confidence 4678899985 66666521 1234444444432 31 233332222 122234555688888887
Q ss_pred CCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCC
Q 039497 455 GRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534 (642)
Q Consensus 455 ~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 534 (642)
..+ ..++++|.++.+. +..+... ......+++||++|+.+... ..|+++|.++.+...-..-+..
T Consensus 83 ~~~--~~v~viD~~t~~v---~~~i~~g--~~~g~glt~Dg~~l~vs~gs--------~~l~viD~~t~~v~~~I~Vg~~ 147 (266)
T 2iwa_A 83 WLK--NIGFIYDRRTLSN---IKNFTHQ--MKDGWGLATDGKILYGSDGT--------SILYEIDPHTFKLIKKHNVKYN 147 (266)
T ss_dssp TTC--SEEEEEETTTTEE---EEEEECC--SSSCCEEEECSSSEEEECSS--------SEEEEECTTTCCEEEEEECEET
T ss_pred ecC--CEEEEEECCCCcE---EEEEECC--CCCeEEEEECCCEEEEECCC--------CeEEEEECCCCcEEEEEEECCC
Confidence 644 4899999998876 5666543 11235688899988876532 3599999988665433221111
Q ss_pred CCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee-eccCCC-------------C
Q 039497 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR-RLTWNG-------------Y 600 (642)
Q Consensus 535 ~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~lt~~~-------------~ 600 (642)
+ .+......+.|. || .||...... ..|.++|..++++. .+...+ .
T Consensus 148 ~---~p~~~~nele~~-dg-~lyvn~~~~----------------~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~ 206 (266)
T 2iwa_A 148 G---HRVIRLNELEYI-NG-EVWANIWQT----------------DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDID 206 (266)
T ss_dssp T---EECCCEEEEEEE-TT-EEEEEETTS----------------SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCC
T ss_pred C---cccccceeEEEE-CC-EEEEecCCC----------------CeEEEEECCCCcEEEEEECCCcccccccccccccC
Confidence 1 000023456777 77 566444322 28999999888743 343221 1
Q ss_pred CCCCcEEecCC-ceEEeecCC
Q 039497 601 ENGTPAWHPGN-QLDLGKLRL 620 (642)
Q Consensus 601 ~~~~~~~s~dg-~~~~~~~~~ 620 (642)
....++|+|++ ++|++...-
T Consensus 207 v~nGIa~~~~~~~lfVTgk~~ 227 (266)
T 2iwa_A 207 VLNGIAWDQENKRIFVTGKLW 227 (266)
T ss_dssp CEEEEEEETTTTEEEEEETTC
T ss_pred ceEEEEEcCCCCEEEEECCCC
Confidence 22578999998 566776543
No 252
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.34 E-value=4.1e-06 Score=92.32 Aligned_cols=207 Identities=7% Similarity=0.004 Sum_probs=125.7
Q ss_pred ceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497 353 NAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT 431 (642)
Q Consensus 353 ~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 431 (642)
...|+++++++.+...+.. ...+..++|++++..||++.. ....+ +.++. ++.. .+. ....+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~------~~~~I--~~~~~--~g~~--~~~----~~~~~i 448 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL------SQRMI--CSTQL--DRAH--GVS----SYDTVI 448 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCT------TTTSB--EEEES--CCCC--C-C----CCCCBC
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEec------CCCeE--EEEec--CCCC--CCc----ceEEEE
Confidence 3578888988876554443 456778899999888888763 23344 44444 2100 001 111121
Q ss_pred ccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccceeEecCCCEEEEEecCCCCCCC
Q 039497 432 KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPSWSPKGDLIAFSSNRHNPDNV 510 (642)
Q Consensus 432 ~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~ 510 (642)
.........+++.+.++.|+++.. +...|+++++++.. .+.+.. .......++++|++.+||++....
T Consensus 449 ~~~~~~P~glavD~~~g~LY~tD~--~~~~I~v~d~dg~~----~~~l~~~~~~~P~giavDp~~g~ly~td~~~----- 517 (699)
T 1n7d_A 449 SRDIQAPDGLAVDWIHSNIYWTDS--VLGTVSVADTKGVK----RKTLFREQGSKPRAIVVDPVHGFMYWTDWGT----- 517 (699)
T ss_dssp CSCC--CCCEECCCSSSBCEECCT--TTSCEEEEBSSSCC----EEEECCCSSCCCCCEECCSSSSCCEECCCSS-----
T ss_pred eCCCCCcceEEEEeeCCcEEEEec--cCCeEEEEecCCCc----eEEEEeCCCCCcceEEEccCCCcEEEcccCC-----
Confidence 111123456788877778877654 34579999988554 344433 223446779999888888776432
Q ss_pred CceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497 511 EAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590 (642)
Q Consensus 511 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 590 (642)
...|+++++++...+.+...... .+..++|++++++||++.... ..|+++++++.
T Consensus 518 -~~~I~~~~~dG~~~~~l~~~~l~--------~PnGlavd~~~~~LY~aD~~~----------------~~I~~~d~dG~ 572 (699)
T 1n7d_A 518 -PAKIKKGGLNGVDIYSLVTENIQ--------WPNGITLDLLSGRLYWVDSKL----------------HSISSIDVNGG 572 (699)
T ss_dssp -SCCEEBCCSSSCCCCEESCSSCS--------SCCCEEECTTTCCEEEEETTT----------------TEEEEECSSSS
T ss_pred -CCeEEEEeCCCCCeeEEEeCCCC--------CccEEEEeccCCEEEEEecCC----------------CeEEEEccCCC
Confidence 23599999988766555432221 356799999999999887543 28999999887
Q ss_pred ceeeccCCC---CCCCCcEEecCC
Q 039497 591 GLRRLTWNG---YENGTPAWHPGN 611 (642)
Q Consensus 591 ~~~~lt~~~---~~~~~~~~s~dg 611 (642)
..+.+.... .....+++..+.
T Consensus 573 ~~~~~~~~~~~~~~P~glavd~~~ 596 (699)
T 1n7d_A 573 NRKTILEDEKRLAHPFSLAVFEDK 596 (699)
T ss_dssp CCEEECCCSSSCSSCCCCEEETTE
T ss_pred ceEEEEecCCcCCCceEeEEECCE
Confidence 655554321 233456665553
No 253
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.26 E-value=0.00022 Score=73.63 Aligned_cols=158 Identities=14% Similarity=0.083 Sum_probs=100.8
Q ss_pred CccEEcC-CCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 333 SFPSFSP-DGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 333 ~~~~~sp-dg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
..++++| ++..|+++... ..|++++++++....+.. ......++|+++|+.|+++... .......++.+..
T Consensus 140 ~~lavdp~~~g~Lyv~d~~---~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~----~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQ---HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQ----NNNDRPNNYILTR 212 (430)
T ss_dssp CEEEEETTEEEEEEEEEBT---EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECC----SCTTSEEEEEEEG
T ss_pred CEEEECCCCCCeEEEEeCC---CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCC----CCcccceEEEEeC
Confidence 3568888 45666665542 889999999887666655 4457789999999988888742 1122334454544
Q ss_pred ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC--CCcccc
Q 039497 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG--PWIDTM 488 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~--~~~~~~ 488 (642)
+ ++.. ....+... .....++++|++.+|+++.... .+|++++.+++.. ..+... ......
T Consensus 213 --~-----g~~~---~~~~l~~~--~~p~giavdp~~g~lyv~d~~~--~~V~~~~~~~~~~----~~~~~~~~~~~P~g 274 (430)
T 3tc9_A 213 --E-----SGFK---VITELTKG--QNCNGAETHPINGELYFNSWNA--GQVFRYDFTTQET----TPLFTIQDSGWEFH 274 (430)
T ss_dssp --G-----GTSC---SEEEEEEC--SSCCCEEECTTTCCEEEEETTT--TEEEEEETTTTEE----EEEEECSSSSCCEE
T ss_pred --C-----Ccee---eeeeeccC--CCceEEEEeCCCCEEEEEECCC--CEEEEEECCCCcE----EEEEEcCCCCccee
Confidence 2 1110 11223222 3456788999666787776533 4899999987652 233211 123457
Q ss_pred eeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497 489 PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG 522 (642)
Q Consensus 489 ~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~ 522 (642)
++|+|+|++||+...... .|++++.++
T Consensus 275 ia~~pdG~~lyv~d~~~~-------~I~~~~~d~ 301 (430)
T 3tc9_A 275 IQFHPSGNYAYIVVVNQH-------YILRSDYDW 301 (430)
T ss_dssp EEECTTSSEEEEEETTTT-------EEEEEEEET
T ss_pred EEEcCCCCEEEEEECCCC-------EEEEEeCCc
Confidence 899999998888876543 488887764
No 254
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.25 E-value=3.5e-05 Score=76.57 Aligned_cols=171 Identities=10% Similarity=0.044 Sum_probs=98.6
Q ss_pred CceeEEEEECCC--CCeeEEeecC--------Cceeeeeec--CCC-EEEEEEcCCCcccCCCeEEEEEEEeecCCCCCC
Q 039497 352 LNAGIKIAKSDG--SKRWTLIKDR--------TAFYNSWSP--TEK-HVIYTSTGPIFQSERATVQIARVSFQLDPSDDN 418 (642)
Q Consensus 352 ~~~~l~~~d~~~--~~~~~l~~~~--------~~~~~~~sp--dg~-~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 418 (642)
....|+++|.++ .+.+.+...+ ....+.+.+ ||+ +|+++... .....+.++.++. +
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~----~~~s~ielf~~d~--~----- 149 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHP----GSSSTVEVFKFQE--E----- 149 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECS----TTCCEEEEEEEET--T-----
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECC----CCCCeEEEEEEEC--C-----
Confidence 457899999874 3444443321 344555555 566 45555542 2467888999987 3
Q ss_pred CCCccccceEEc---cccCCCCccCcEECCCCCeEEEEeC---------------CCCceeEEEEECCCCccccceeeCC
Q 039497 419 NREEIPCDVKIL---TKEETGNNAFPSCSPDGKFLVFRSG---------------RSGHKNLFVLDAVNGEFNGDIRQLT 480 (642)
Q Consensus 419 ~~~~~~~~~~~l---~~~~~~~~~~~~~SpDg~~l~~~~~---------------~~g~~~l~~~d~~~g~~~~~~~~l~ 480 (642)
+. ....+ ..........+.+.++|+. +++.. ......||+++.. + ++.+.
T Consensus 150 -~~----~~~~~~~~~g~~~~~pND~~v~~~G~f-yvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~----~~~~~ 217 (355)
T 3sre_A 150 -EK----SLLHLKTIRHKLLPSVNDIVAVGPEHF-YATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D----VRVVA 217 (355)
T ss_dssp -TT----EEEEEEEECCTTCSSEEEEEEEETTEE-EEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C----CEEEE
T ss_pred -CC----EEEEEeccccCCCCCCceEEEeCCCCE-EecCCcEeCCcccccchhhccCCccEEEEEECC--e----EEEee
Confidence 21 22222 2222234456788899864 33332 1134589999863 4 35544
Q ss_pred CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC-CceEEeeecCCCCCCCcccccccceEEcC-CCCEEEE
Q 039497 481 DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG-SGLRRIHVAGPEGSGDVDRERINHVCFSA-DGEWLLF 558 (642)
Q Consensus 481 ~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~S~-Dg~~l~~ 558 (642)
..-...+.++|||||+.||++.... ..|++++++. +...........+ .+..+++.+ +|. |+.
T Consensus 218 ~~l~~pNGia~spDg~~lYvadt~~-------~~I~~~~~~~~g~l~~~~~~~~~g-------~PDGi~vD~e~G~-lwv 282 (355)
T 3sre_A 218 EGFDFANGINISPDGKYVYIAELLA-------HKIHVYEKHANWTLTPLRVLSFDT-------LVDNISVDPVTGD-LWV 282 (355)
T ss_dssp EEESSEEEEEECTTSSEEEEEEGGG-------TEEEEEEECTTSCEEEEEEEECSS-------EEEEEEECTTTCC-EEE
T ss_pred cCCcccCcceECCCCCEEEEEeCCC-------CeEEEEEECCCCcEecCEEEeCCC-------CCceEEEeCCCCc-EEE
Confidence 4334557889999999999998754 3499998863 3332211111223 456788888 587 444
Q ss_pred EE
Q 039497 559 TA 560 (642)
Q Consensus 559 ~~ 560 (642)
+.
T Consensus 283 a~ 284 (355)
T 3sre_A 283 GC 284 (355)
T ss_dssp EE
T ss_pred Ee
Confidence 33
No 255
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.25 E-value=0.00023 Score=70.44 Aligned_cols=234 Identities=9% Similarity=-0.037 Sum_probs=131.3
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---------------------cCCceeeeeecCCCEEEEEE
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---------------------DRTAFYNSWSPTEKHVIYTS 391 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---------------------~~~~~~~~~spdg~~l~~~~ 391 (642)
..+.|+++|+. +|+. .....|+.++.+++....+.. ......+++.+++..|+++.
T Consensus 22 ~~i~~d~~g~~-l~v~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 22 NSFTFDSTNKG-FYTS--VQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCEECCTTCSS-EEEE--CTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred eEEEEcCCCCE-EEEE--cCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 45688899873 4443 234679999988776554432 12345678887444577765
Q ss_pred cCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcccc----CCCCccCcEECC-CCCeEEEEeCC----------
Q 039497 392 TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE----ETGNNAFPSCSP-DGKFLVFRSGR---------- 456 (642)
Q Consensus 392 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~Sp-Dg~~l~~~~~~---------- 456 (642)
. ... ++.++. + ++ ..+.+... .......+++.| ||+ |+++...
T Consensus 99 ~-------~~~--i~~~d~--~-----~g-----~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~ 156 (322)
T 2fp8_A 99 C-------YYH--LSVVGS--E-----GG-----HATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQ 156 (322)
T ss_dssp T-------TTE--EEEECT--T-----CE-----ECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHH
T ss_pred C-------CCC--EEEEeC--C-----CC-----EEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccce
Confidence 3 122 444544 2 12 22333211 112345688999 885 5555432
Q ss_pred -----CCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC---ceEEe
Q 039497 457 -----SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS---GLRRI 528 (642)
Q Consensus 457 -----~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~---~~~~l 528 (642)
.....|++++.++++. ..+.........++|+|||+.|++..... ..|+++++++. ..+.+
T Consensus 157 ~~~~~~~~g~v~~~d~~~~~~----~~~~~~~~~p~gia~~~dg~~lyv~d~~~-------~~I~~~~~~~~~~~~~~~~ 225 (322)
T 2fp8_A 157 IMDTSDKTGRLIKYDPSTKET----TLLLKELHVPGGAEVSADSSFVLVAEFLS-------HQIVKYWLEGPKKGTAEVL 225 (322)
T ss_dssp HHHHTCCCEEEEEEETTTTEE----EEEEEEESCCCEEEECTTSSEEEEEEGGG-------TEEEEEESSSTTTTCEEEE
T ss_pred ehcccCCCceEEEEeCCCCEE----EEeccCCccCcceEECCCCCEEEEEeCCC-------CeEEEEECCCCcCCccceE
Confidence 1235799999987763 43322222345679999999888886643 24999999863 33333
Q ss_pred eecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCC----CCCC
Q 039497 529 HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGY----ENGT 604 (642)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~----~~~~ 604 (642)
.. ..+ +..+.++++|+ |+++....... .+ .+.....|++++.++.....+....+ ....
T Consensus 226 ~~--~~g--------P~gi~~d~~G~-l~va~~~~~~~-----~~-~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~ 288 (322)
T 2fp8_A 226 VK--IPN--------PGNIKRNADGH-FWVSSSEELDG-----NM-HGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQ 288 (322)
T ss_dssp EE--CSS--------EEEEEECTTSC-EEEEEEEETTS-----ST-TSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCE
T ss_pred Ee--CCC--------CCCeEECCCCC-EEEEecCcccc-----cc-cCCCccEEEEECCCCCEEEEEECCCCCccccceE
Confidence 22 111 35688999997 55554331000 00 00001278999988765655554322 2233
Q ss_pred cEEecCCceEEeecCC
Q 039497 605 PAWHPGNQLDLGKLRL 620 (642)
Q Consensus 605 ~~~s~dg~~~~~~~~~ 620 (642)
+.+ .+++++++....
T Consensus 289 ~~~-~~g~L~v~~~~~ 303 (322)
T 2fp8_A 289 IQE-HDGLLYIGTLFH 303 (322)
T ss_dssp EEE-ETTEEEEECSSC
T ss_pred EEE-eCCEEEEeecCC
Confidence 444 578888876443
No 256
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.24 E-value=0.00015 Score=67.36 Aligned_cols=198 Identities=12% Similarity=0.086 Sum_probs=118.8
Q ss_pred cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecC
Q 039497 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD 413 (642)
Q Consensus 335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 413 (642)
+.|++ .+|+......+...|..+|+++++...... ..........+++++|+.... ..+.+.+++...
T Consensus 26 L~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw------~~~~v~v~D~~t--- 94 (243)
T 3mbr_X 26 LFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTW------RNHEGFVYDLAT--- 94 (243)
T ss_dssp EEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEES------SSSEEEEEETTT---
T ss_pred EEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEe------eCCEEEEEECCc---
Confidence 35654 556555544566799999999998765544 445555556667888888873 255555555432
Q ss_pred CCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC--CC---cccc
Q 039497 414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG--PW---IDTM 488 (642)
Q Consensus 414 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~--~~---~~~~ 488 (642)
.. ....+.... ....+++||+.|+.+ + +...|+.+|.++.+. ...+.-. .. ..+.
T Consensus 95 ------l~----~~~ti~~~~----~Gwglt~dg~~L~vS-d--gs~~l~~iDp~t~~~---~~~I~V~~~g~~~~~lNe 154 (243)
T 3mbr_X 95 ------LT----PRARFRYPG----EGWALTSDDSHLYMS-D--GTAVIRKLDPDTLQQ---VGSIKVTAGGRPLDNLNE 154 (243)
T ss_dssp ------TE----EEEEEECSS----CCCEEEECSSCEEEE-C--SSSEEEEECTTTCCE---EEEEECEETTEECCCEEE
T ss_pred ------Cc----EEEEEeCCC----CceEEeeCCCEEEEE-C--CCCeEEEEeCCCCeE---EEEEEEccCCccccccee
Confidence 11 334443322 234667899887655 3 456899999998875 4444332 11 2233
Q ss_pred eeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-CCCCC----CcccccccceEEcCCCCEEEEEEecC
Q 039497 489 PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEGSG----DVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 489 ~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~----~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
+.|. +|+ |+...-. ...|.++|.++++........ ..... .......+.++++|++++|+++...
T Consensus 155 Le~~-~G~-lyanvw~-------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~- 224 (243)
T 3mbr_X 155 LEWV-NGE-LLANVWL-------TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR- 224 (243)
T ss_dssp EEEE-TTE-EEEEETT-------TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT-
T ss_pred eEEe-CCE-EEEEECC-------CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC-
Confidence 4555 664 5544322 235999999999876554421 10000 0001134679999999999888754
Q ss_pred CcccCCCCCCCCCCCCCcEEEEEcC
Q 039497 564 AVMAEPVSWPNQFQPYGDLYVVKLD 588 (642)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~l~~~~~~ 588 (642)
|| .||.+.+.
T Consensus 225 --------wp-------~~~~v~~~ 234 (243)
T 3mbr_X 225 --------WP-------MLYEIRLT 234 (243)
T ss_dssp --------CS-------EEEEEEEC
T ss_pred --------CC-------cEEEEEEe
Confidence 33 78887654
No 257
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.19 E-value=0.0004 Score=71.77 Aligned_cols=158 Identities=9% Similarity=0.044 Sum_probs=96.6
Q ss_pred CccEEcCC--CCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497 333 SFPSFSPD--GGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVS 409 (642)
Q Consensus 333 ~~~~~spd--g~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~ 409 (642)
..++|+|+ +..|++.... ..|++++++++....+.. ......++++++|+ |+++... .......++.+.
T Consensus 142 ~gvavd~~s~~g~Lyv~D~~---~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~----~~~~~~gv~~~~ 213 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVGQR---DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQ----SSDTNTGIYLFT 213 (433)
T ss_dssp CEEEECTTTTTCEEEEECBT---SCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECC----SCTTSEEEEEEC
T ss_pred ceEEEccccCCCEEEEEeCC---CCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCC----CCcccceEEEEE
Confidence 35688985 4556665432 789999998887666654 44577899999999 7777632 011123344443
Q ss_pred eecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-C-CCccc
Q 039497 410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-G-PWIDT 487 (642)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~-~~~~~ 487 (642)
. + ++.. ....+.. . .....+++.|++..|+++... ...|++++.++|+. ...+.. . .....
T Consensus 214 ~--~-----~~~~---~~~~~~~-~-~~P~giavd~~~G~lyv~d~~--~~~V~~~d~~~g~~---~~~~~~~~~~~~~~ 276 (433)
T 4hw6_A 214 R--A-----SGFT---ERLSLCN-A-RGAKTCAVHPQNGKIYYTRYH--HAMISSYDPATGTL---TEEEVMMDTKGSNF 276 (433)
T ss_dssp G--G-----GTTC---CEEEEEE-C-SSBCCCEECTTTCCEEECBTT--CSEEEEECTTTCCE---EEEEEECSCCSSCE
T ss_pred C--C-----CCee---ccccccc-c-CCCCEEEEeCCCCeEEEEECC--CCEEEEEECCCCeE---EEEEeccCCCCCcc
Confidence 3 1 1110 1122222 1 345678999955567777653 34899999987763 133321 1 11223
Q ss_pred ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG 522 (642)
Q Consensus 488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~ 522 (642)
.++|+|+|++||++..... .|++++++.
T Consensus 277 ~ia~dpdG~~LYvad~~~~-------~I~~~~~d~ 304 (433)
T 4hw6_A 277 HIVWHPTGDWAYIIYNGKH-------CIYRVDYNR 304 (433)
T ss_dssp EEEECTTSSEEEEEETTTT-------EEEEEEBCT
T ss_pred cEEEeCCCCEEEEEeCCCC-------EEEEEeCCC
Confidence 5899999998988876543 489988763
No 258
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.17 E-value=0.00072 Score=63.71 Aligned_cols=196 Identities=10% Similarity=0.098 Sum_probs=116.1
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
.++|.|++++|+.+.+. ...|+.+|+++...+.+.. ......+++.+++. ++++.. ....+.++.+..
T Consensus 31 Gla~~~~~~~L~aV~d~--~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~-~~vs~E------~~~~l~~~~v~~- 100 (255)
T 3qqz_A 31 SLTWSAQSNTLFSTINK--PAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQ-FVISDE------RDYAIYVISLTP- 100 (255)
T ss_dssp EEEEETTTTEEEEEEET--TEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTE-EEEEET------TTTEEEEEEECT-
T ss_pred eeEEeCCCCEEEEEECC--CCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCE-EEEEEC------CCCcEEEEEcCC-
Confidence 55889998888877753 6889999999554444433 34677888888875 555553 245666666644
Q ss_pred cCCCCCCCCC-ccccceE-Ec-cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEEC--CCCccccceeeCC------
Q 039497 412 LDPSDDNNRE-EIPCDVK-IL-TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA--VNGEFNGDIRQLT------ 480 (642)
Q Consensus 412 ~~~~~~~~~~-~~~~~~~-~l-~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~--~~g~~~~~~~~l~------ 480 (642)
+ +. ....... .+ ..........++|+|+++.|+.+..+. ...||.++- .+.. +..+.
T Consensus 101 -~------~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-p~~i~~~~g~~~~~~----l~i~~~~~~~~ 168 (255)
T 3qqz_A 101 -N------SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-PIEVYKVNGLLSSNE----LHISKDKALQR 168 (255)
T ss_dssp -T------CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS-SEEEEEEESTTCSSC----CEEEECHHHHH
T ss_pred -C------CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC-CceEEEEcccccCCc----eeeecchhhcc
Confidence 2 21 0000111 11 111113456789999999988877653 458898882 1111 12211
Q ss_pred -CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec-CCCCCCCcccccccceEEcCCCCEEEE
Q 039497 481 -DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVCFSADGEWLLF 558 (642)
Q Consensus 481 -~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~S~Dg~~l~~ 558 (642)
........+++.|.-..|++.+.... .|..+|.++.-...+... +..+. ......+..++|.++|+ ||+
T Consensus 169 ~~~~~d~S~l~~dp~tg~lliLS~~s~-------~L~~~d~~g~~~~~~~L~~g~~~l-~~~~~qpEGia~d~~G~-lyI 239 (255)
T 3qqz_A 169 QFTLDDVSGAEFNQQKNTLLVLSHESR-------ALQEVTLVGEVIGEMSLTKGSRGL-SHNIKQAEGVAMDASGN-IYI 239 (255)
T ss_dssp TCCSSCCCEEEEETTTTEEEEEETTTT-------EEEEECTTCCEEEEEECSTTGGGC-SSCCCSEEEEEECTTCC-EEE
T ss_pred ccccCCceeEEEcCCCCeEEEEECCCC-------eEEEEcCCCCEEEEEEcCCccCCc-ccccCCCCeeEECCCCC-EEE
Confidence 11224567899998888888887654 499999987633333322 11000 00012456789999997 666
Q ss_pred EE
Q 039497 559 TA 560 (642)
Q Consensus 559 ~~ 560 (642)
++
T Consensus 240 vs 241 (255)
T 3qqz_A 240 VS 241 (255)
T ss_dssp EE
T ss_pred Ec
Confidence 64
No 259
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.15 E-value=0.0037 Score=68.57 Aligned_cols=82 Identities=11% Similarity=0.018 Sum_probs=51.6
Q ss_pred eeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCc
Q 039497 460 KNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV 539 (642)
Q Consensus 460 ~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 539 (642)
..|+.+|+.+|+. +-.+... .......++.+|..+++...++ .|+.+|+.+++...-.......
T Consensus 457 g~l~A~D~~tG~~---~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg--------~l~a~D~~tG~~lw~~~~~~~~---- 520 (677)
T 1kb0_A 457 GRLLAWDPVAQKA---AWSVEHV-SPWNGGTLTTAGNVVFQGTADG--------RLVAYHAATGEKLWEAPTGTGV---- 520 (677)
T ss_dssp EEEEEEETTTTEE---EEEEEES-SSCCCCEEEETTTEEEEECTTS--------EEEEEETTTCCEEEEEECSSCC----
T ss_pred cEEEEEeCCCCcE---EeecCCC-CCCcCcceEeCCCEEEEECCCC--------cEEEEECCCCceeeeeeCCCCc----
Confidence 5899999999985 3333322 2233456777888777764443 4999999988765433322222
Q ss_pred ccccccceEEcCCCCEEEEEE
Q 039497 540 DRERINHVCFSADGEWLLFTA 560 (642)
Q Consensus 540 ~~~~~~~~~~S~Dg~~l~~~~ 560 (642)
....+.|+.||+.++...
T Consensus 521 ---~~~p~~y~~~G~~~v~~~ 538 (677)
T 1kb0_A 521 ---VAAPSTYMVDGRQYVSVA 538 (677)
T ss_dssp ---CSCCEEEEETTEEEEEEE
T ss_pred ---ccCCEEEEeCCEEEEEEe
Confidence 235677889998665543
No 260
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.13 E-value=0.00012 Score=71.94 Aligned_cols=187 Identities=13% Similarity=0.021 Sum_probs=102.8
Q ss_pred CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEE
Q 039497 373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF 452 (642)
Q Consensus 373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~ 452 (642)
.....++|+|+|+ |+++.. ... .|+.++. + + ....+.... .....+++++||+ |++
T Consensus 32 ~~pegia~~~~g~-lyv~d~------~~~--~I~~~d~--~------g-----~~~~~~~~~-~~p~gia~~~dG~-l~v 87 (306)
T 2p4o_A 32 TFLENLASAPDGT-IFVTNH------EVG--EIVSITP--D------G-----NQQIHATVE-GKVSGLAFTSNGD-LVA 87 (306)
T ss_dssp CCEEEEEECTTSC-EEEEET------TTT--EEEEECT--T------C-----CEEEEEECS-SEEEEEEECTTSC-EEE
T ss_pred CCcceEEECCCCC-EEEEeC------CCC--eEEEECC--C------C-----ceEEEEeCC-CCceeEEEcCCCc-EEE
Confidence 3456789999887 666652 123 4566655 2 2 222222222 3566789999998 555
Q ss_pred EeCCCCceeEEEEECCCCccccceeeCCCCC--CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497 453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP--WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530 (642)
Q Consensus 453 ~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~--~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 530 (642)
+........|+.++..+|+. +.+.... .....+...+++ .+++..... ..||++|..+++.+....
T Consensus 88 ad~~~~~~~v~~~d~~~g~~----~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~-------g~i~~~d~~~~~~~v~~~ 155 (306)
T 2p4o_A 88 TGWNADSIPVVSLVKSDGTV----ETLLTLPDAIFLNGITPLSDT-QYLTADSYR-------GAIWLIDVVQPSGSIWLE 155 (306)
T ss_dssp EEECTTSCEEEEEECTTSCE----EEEEECTTCSCEEEEEESSSS-EEEEEETTT-------TEEEEEETTTTEEEEEEE
T ss_pred EeccCCcceEEEEcCCCCeE----EEEEeCCCccccCcccccCCC-cEEEEECCC-------CeEEEEeCCCCcEeEEEE
Confidence 54322234689999888874 4432211 122334444444 455554322 259999987653332211
Q ss_pred cC------CCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC-Cce---eeccCCCC
Q 039497 531 AG------PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG-SGL---RRLTWNGY 600 (642)
Q Consensus 531 ~~------~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~---~~lt~~~~ 600 (642)
.. ... ....... +++||++||++.... ..|+++++++ +.+ ..+.. ..
T Consensus 156 ~~~~~~~~~~~----~~~~png--is~dg~~lyv~d~~~----------------~~I~~~~~~~~g~~~~~~~~~~-~~ 212 (306)
T 2p4o_A 156 HPMLARSNSES----VFPAANG--LKRFGNFLYVSNTEK----------------MLLLRIPVDSTDKPGEPEIFVE-QT 212 (306)
T ss_dssp CGGGSCSSTTC----CSCSEEE--EEEETTEEEEEETTT----------------TEEEEEEBCTTSCBCCCEEEEE-SC
T ss_pred CCccccccccC----CCCcCCC--cCcCCCEEEEEeCCC----------------CEEEEEEeCCCCCCCccEEEec-cC
Confidence 00 000 0001222 389999998877543 2899999875 322 11211 13
Q ss_pred CCCCcEEecCCceEEeec
Q 039497 601 ENGTPAWHPGNQLDLGKL 618 (642)
Q Consensus 601 ~~~~~~~s~dg~~~~~~~ 618 (642)
....++++++|++|++..
T Consensus 213 ~P~gi~vd~dG~l~va~~ 230 (306)
T 2p4o_A 213 NIDDFAFDVEGNLYGATH 230 (306)
T ss_dssp CCSSEEEBTTCCEEEECB
T ss_pred CCCCeEECCCCCEEEEeC
Confidence 456789999998887764
No 261
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.13 E-value=0.00014 Score=68.22 Aligned_cols=182 Identities=8% Similarity=-0.019 Sum_probs=106.4
Q ss_pred CCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCC
Q 039497 341 GGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR 420 (642)
Q Consensus 341 g~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 420 (642)
+++|+..... ...|.++|+++++.............-..+++++|+.+.. ..+.+.+++... .
T Consensus 64 ~~~Ly~stG~--~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw------~~~~v~V~D~~T---------l 126 (268)
T 3nok_A 64 QGHFFESTGH--QGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTW------TEGLLFTWSGMP---------P 126 (268)
T ss_dssp TTEEEEEETT--TTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEES------SSCEEEEEETTT---------T
T ss_pred CCEEEEEcCC--CCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEc------cCCEEEEEECCc---------C
Confidence 5666555432 2349999999887644334334444445678888988773 245555555432 2
Q ss_pred CccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC--CCC---cccceeEecCC
Q 039497 421 EEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD--GPW---IDTMPSWSPKG 495 (642)
Q Consensus 421 ~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~--~~~---~~~~~~~spdG 495 (642)
+ ....+.... ....+++||+.|+.+. +...|+.+|.++.+. ...+.- ... ..+.+.|. ||
T Consensus 127 ~----~~~ti~~~~----eGwGLt~Dg~~L~vSd---Gs~~l~~iDp~T~~v---~~~I~V~~~g~~v~~lNeLe~~-dG 191 (268)
T 3nok_A 127 Q----RERTTRYSG----EGWGLCYWNGKLVRSD---GGTMLTFHEPDGFAL---VGAVQVKLRGQPVELINELECA-NG 191 (268)
T ss_dssp E----EEEEEECSS----CCCCEEEETTEEEEEC---SSSEEEEECTTTCCE---EEEEECEETTEECCCEEEEEEE-TT
T ss_pred c----EEEEEeCCC----ceeEEecCCCEEEEEC---CCCEEEEEcCCCCeE---EEEEEeCCCCcccccccccEEe-CC
Confidence 1 334444322 1245567998876654 456999999998876 444432 211 22345666 77
Q ss_pred CEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-C----CCCCCcccccccceEEcCCCCEEEEEEec
Q 039497 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-P----EGSGDVDRERINHVCFSADGEWLLFTANL 562 (642)
Q Consensus 496 ~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~----~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~ 562 (642)
.|+...-. ...|.++|.++++........ . ...........+.++|+|++++|+++...
T Consensus 192 -~lyanvw~-------s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 192 -VIYANIWH-------SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp -EEEEEETT-------CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred -EEEEEECC-------CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 46654432 236999999999876544321 0 00000000134679999999998887653
No 262
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.10 E-value=0.00074 Score=63.63 Aligned_cols=198 Identities=10% Similarity=0.113 Sum_probs=118.2
Q ss_pred CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEE
Q 039497 373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF 452 (642)
Q Consensus 373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~ 452 (642)
..+..++|.|+++.|+.+.. ..-.|+.++. . +. ..+.+..........+++.++|+ ++.
T Consensus 27 ~~lSGla~~~~~~~L~aV~d--------~~~~I~~ld~--~------g~----v~~~i~l~g~~D~EGIa~~~~g~-~~v 85 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTIN--------KPAAIVEMTT--N------GD----LIRTIPLDFVKDLETIEYIGDNQ-FVI 85 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEE--------TTEEEEEEET--T------CC----EEEEEECSSCSSEEEEEECSTTE-EEE
T ss_pred cCcceeEEeCCCCEEEEEEC--------CCCeEEEEeC--C------CC----EEEEEecCCCCChHHeEEeCCCE-EEE
Confidence 45788999999999988874 3566888887 3 21 44444332224566788888886 444
Q ss_pred EeCCCCceeEEEEECCCCccccceeeCC------CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEe--CCCCc
Q 039497 453 RSGRSGHKNLFVLDAVNGEFNGDIRQLT------DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIK--PDGSG 524 (642)
Q Consensus 453 ~~~~~g~~~l~~~d~~~g~~~~~~~~l~------~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~ 524 (642)
+..+. ..|+++++........+..+. ........++|+|+++.|+....+. ...||.++ +.+..
T Consensus 86 s~E~~--~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~------p~~i~~~~g~~~~~~ 157 (255)
T 3qqz_A 86 SDERD--YAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN------PIEVYKVNGLLSSNE 157 (255)
T ss_dssp EETTT--TEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS------SEEEEEEESTTCSSC
T ss_pred EECCC--CcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC------CceEEEEcccccCCc
Confidence 55443 467777765332100011111 1223346789999999998877653 34688887 22222
Q ss_pred eEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCC----
Q 039497 525 LRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGY---- 600 (642)
Q Consensus 525 ~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~---- 600 (642)
.+.+....... ......+..+++.|....|++.+.... .|..+|.++..+..+.=..+
T Consensus 158 l~i~~~~~~~~--~~~~~d~S~l~~dp~tg~lliLS~~s~----------------~L~~~d~~g~~~~~~~L~~g~~~l 219 (255)
T 3qqz_A 158 LHISKDKALQR--QFTLDDVSGAEFNQQKNTLLVLSHESR----------------ALQEVTLVGEVIGEMSLTKGSRGL 219 (255)
T ss_dssp CEEEECHHHHH--TCCSSCCCEEEEETTTTEEEEEETTTT----------------EEEEECTTCCEEEEEECSTTGGGC
T ss_pred eeeecchhhcc--ccccCCceeEEEcCCCCeEEEEECCCC----------------eEEEEcCCCCEEEEEEcCCccCCc
Confidence 33221100000 000013567899999999999987643 78899988864333322211
Q ss_pred -----CCCCcEEecCCceEEee
Q 039497 601 -----ENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 601 -----~~~~~~~s~dg~~~~~~ 617 (642)
..-.++|.++|.+|+++
T Consensus 220 ~~~~~qpEGia~d~~G~lyIvs 241 (255)
T 3qqz_A 220 SHNIKQAEGVAMDASGNIYIVS 241 (255)
T ss_dssp SSCCCSEEEEEECTTCCEEEEE
T ss_pred ccccCCCCeeEECCCCCEEEEc
Confidence 22468999999888775
No 263
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.06 E-value=6.5e-05 Score=72.66 Aligned_cols=145 Identities=9% Similarity=0.081 Sum_probs=89.7
Q ss_pred CccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC-CcccceeEecCCCEEEEEecCCCCCCCCceeE
Q 039497 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP-WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSL 515 (642)
Q Consensus 437 ~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~-~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l 515 (642)
....+.++|||+.|+ .. ...|+.+|. +|+. +..+.... .....+.+.|||+.|+...... ..|
T Consensus 38 ~~~~~~~~pdG~ilv-s~----~~~V~~~d~-~G~~---~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~-------~~v 101 (276)
T 3no2_A 38 ECNSVAATKAGEILF-SY----SKGAKMITR-DGRE---LWNIAAPAGCEMQTARILPDGNALVAWCGHP-------STI 101 (276)
T ss_dssp CCCEEEECTTSCEEE-EC----BSEEEEECT-TSCE---EEEEECCTTCEEEEEEECTTSCEEEEEESTT-------EEE
T ss_pred CCcCeEECCCCCEEE-eC----CCCEEEECC-CCCE---EEEEcCCCCccccccEECCCCCEEEEecCCC-------CEE
Confidence 355678999998766 32 347999999 6775 55555432 3455678999999877766422 348
Q ss_pred EEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeec
Q 039497 516 YVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL 595 (642)
Q Consensus 516 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 595 (642)
+.+|.+++....+....... .+......+.+++||+.|+..... ..|+.+|.+|+.+.++
T Consensus 102 ~~vd~~Gk~l~~~~~~~~~~---~~~~~~~~v~~~~~G~~lv~~~~~-----------------~~v~~~d~~G~~~w~~ 161 (276)
T 3no2_A 102 LEVNMKGEVLSKTEFETGIE---RPHAQFRQINKNKKGNYLVPLFAT-----------------SEVREIAPNGQLLNSV 161 (276)
T ss_dssp EEECTTSCEEEEEEECCSCS---SGGGSCSCCEECTTSCEEEEETTT-----------------TEEEEECTTSCEEEEE
T ss_pred EEEeCCCCEEEEEeccCCCC---cccccccCceECCCCCEEEEecCC-----------------CEEEEECCCCCEEEEE
Confidence 88898776555544321100 000123456789999977654432 2788898885555444
Q ss_pred cCCCCCCCCcEEecCCceEEeec
Q 039497 596 TWNGYENGTPAWHPGNQLDLGKL 618 (642)
Q Consensus 596 t~~~~~~~~~~~s~dg~~~~~~~ 618 (642)
... ....+....++|+.+++..
T Consensus 162 ~~~-~~~~~~~~~~~g~~~v~~~ 183 (276)
T 3no2_A 162 KLS-GTPFSSAFLDNGDCLVACG 183 (276)
T ss_dssp ECS-SCCCEEEECTTSCEEEECB
T ss_pred ECC-CCccceeEcCCCCEEEEeC
Confidence 432 3345566777887776543
No 264
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.01 E-value=0.0012 Score=68.30 Aligned_cols=169 Identities=15% Similarity=0.118 Sum_probs=101.3
Q ss_pred ccEEcC-CCCEEEEEecCCCceeEEEEECCCCCeeEEeecC-----Cceeeee-------ecCCCEEEEEEcCCCcccCC
Q 039497 334 FPSFSP-DGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDR-----TAFYNSW-------SPTEKHVIYTSTGPIFQSER 400 (642)
Q Consensus 334 ~~~~sp-dg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-----~~~~~~~-------spdg~~l~~~~~~~~~~~~~ 400 (642)
.++++| +...|+++.. ....|+++|++++....+.... ....++| +++|++|++......- ..
T Consensus 143 ~la~dp~~~~~Lyv~~~--~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~--~~ 218 (496)
T 3kya_A 143 RLAFDPLNKDHLYICYD--GHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK--GD 218 (496)
T ss_dssp EEEEETTEEEEEEEEEE--TEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT--GG
T ss_pred EEEEccCCCCEEEEEEC--CCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC--cc
Confidence 457888 4555555543 2467999999998887776522 3677889 9999988888753100 01
Q ss_pred CeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC-------CCcc-
Q 039497 401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV-------NGEF- 472 (642)
Q Consensus 401 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~-------~g~~- 472 (642)
....++.+....++.+.... ....+... .....++++|++++|+++....+ +|+++|++ ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~-----~~~~v~~~--~~p~giavdp~~g~LYvtd~~~g--~V~r~d~~~~~~~~~tg~~~ 289 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRS-----DIQLIAAY--KQCNGATIHPINGELYFNSYEKG--QVFRLDLVDYFKTIKNGGSW 289 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTS-----CEEEEEEE--SCCCCEEECTTTCCEEEEETTTT--EEEEECHHHHHHHHHTTCCC
T ss_pred cCceEEEEecCCCCceeecc-----cceeeccC--CCceEEEEcCCCCeEEEEECCCC--EEEEEecccccccccCceee
Confidence 24456666441111110000 11233322 24456889998889998887544 79999997 5652
Q ss_pred ----cc---ceeeCC-C-CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497 473 ----NG---DIRQLT-D-GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG 522 (642)
Q Consensus 473 ----~~---~~~~l~-~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~ 522 (642)
+. ....+. . .......++|+|+|+.||++.... ..|++++.++
T Consensus 290 tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~-------h~I~kid~dg 341 (496)
T 3kya_A 290 DPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINN-------HYFMRSDYDE 341 (496)
T ss_dssp CCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTT-------TEEEEEEEET
T ss_pred cccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCC-------CEEEEEecCC
Confidence 00 001221 1 112345789999999888887654 3488877655
No 265
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.95 E-value=0.00048 Score=64.54 Aligned_cols=189 Identities=12% Similarity=0.075 Sum_probs=108.8
Q ss_pred ceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEe
Q 039497 375 AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRS 454 (642)
Q Consensus 375 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~ 454 (642)
...+.|+ |+ .|+.+.. ..+...|..++. + +++ ....+.... ......+.++|+.|+...
T Consensus 45 tqGL~~~-~~-~LyestG------~~g~S~v~~vD~--~-----Tgk----v~~~~~l~~--~~FgeGit~~g~~ly~lt 103 (262)
T 3nol_A 45 TEGFFYR-NG-YFYESTG------LNGRSSIRKVDI--E-----SGK----TLQQIELGK--RYFGEGISDWKDKIVGLT 103 (262)
T ss_dssp EEEEEEE-TT-EEEEEEE------ETTEEEEEEECT--T-----TCC----EEEEEECCT--TCCEEEEEEETTEEEEEE
T ss_pred cceEEEE-CC-EEEEECC------CCCCceEEEEEC--C-----CCc----EEEEEecCC--ccceeEEEEeCCEEEEEE
Confidence 4567787 54 6666552 234445555555 2 232 233333222 222334566788998887
Q ss_pred CCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCC
Q 039497 455 GRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534 (642)
Q Consensus 455 ~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 534 (642)
.+++ .++++|.++.+. +..+.... ....+++||+.|+.+... ..|+.+|..+.+...-..-...
T Consensus 104 w~~~--~v~v~D~~t~~~---~~ti~~~~---eG~glt~dg~~L~~SdGs--------~~i~~iDp~T~~v~~~I~V~~~ 167 (262)
T 3nol_A 104 WKNG--LGFVWNIRNLRQ---VRSFNYDG---EGWGLTHNDQYLIMSDGT--------PVLRFLDPESLTPVRTITVTAH 167 (262)
T ss_dssp SSSS--EEEEEETTTCCE---EEEEECSS---CCCCEEECSSCEEECCSS--------SEEEEECTTTCSEEEEEECEET
T ss_pred eeCC--EEEEEECccCcE---EEEEECCC---CceEEecCCCEEEEECCC--------CeEEEEcCCCCeEEEEEEeccC
Confidence 6544 899999999886 56665432 334667889887776532 2499999988665433221111
Q ss_pred CCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee-eccCCC------------CC
Q 039497 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR-RLTWNG------------YE 601 (642)
Q Consensus 535 ~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~lt~~~------------~~ 601 (642)
+ .+......+.|. ||+ |+...-.. ..|.++|..++++. .+...+ ..
T Consensus 168 g---~~~~~lNELe~~-~G~-lyan~w~~----------------~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~v 226 (262)
T 3nol_A 168 G---EELPELNELEWV-DGE-IFANVWQT----------------NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDV 226 (262)
T ss_dssp T---EECCCEEEEEEE-TTE-EEEEETTS----------------SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCC
T ss_pred C---ccccccceeEEE-CCE-EEEEEccC----------------CeEEEEECCCCcEEEEEECCcCccccccccCcCCc
Confidence 1 000012345675 774 65444222 28999999988754 332211 12
Q ss_pred CCCcEEecCC-ceEEeecCCC
Q 039497 602 NGTPAWHPGN-QLDLGKLRLE 621 (642)
Q Consensus 602 ~~~~~~s~dg-~~~~~~~~~~ 621 (642)
...++|+|++ ++|++...-.
T Consensus 227 lNGIA~dp~~~~lfVTGK~Wp 247 (262)
T 3nol_A 227 LNGIAWDKEHHRLFVTGKLWP 247 (262)
T ss_dssp EEEEEEETTTTEEEEEETTCS
T ss_pred eEEEEEcCCCCEEEEECCCCC
Confidence 2568999986 6678876654
No 266
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.95 E-value=0.00025 Score=73.31 Aligned_cols=161 Identities=13% Similarity=0.163 Sum_probs=100.6
Q ss_pred Cceeeeeec-CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEE
Q 039497 374 TAFYNSWSP-TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF 452 (642)
Q Consensus 374 ~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~ 452 (642)
....++++| ++..|+++.. . -.|..++. + ++ ....+.... .....++|+++|++|++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~-------~--~~I~~id~--~-----~~-----~v~~~~~~~-~~P~~ia~d~~G~~lyv 195 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGE-------Q--HPTRLIDF--E-----KE-----YVSTVYSGL-SKVRTICWTHEADSMII 195 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEB-------T--EEEEEEET--T-----TT-----EEEEEECCC-SCEEEEEECTTSSEEEE
T ss_pred CCCEEEECCCCCCeEEEEeC-------C--CcEEEEEC--C-----CC-----EEEEEecCC-CCcceEEEeCCCCEEEE
Confidence 456788998 5677777763 1 45666666 3 22 444444333 45678999999998888
Q ss_pred EeCCCC--ceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497 453 RSGRSG--HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530 (642)
Q Consensus 453 ~~~~~g--~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 530 (642)
+....+ ...++.++.+ |.. .....+... .....++++|++..|++...... +|++++++++....+..
T Consensus 196 ad~~~~~~~~~v~~~~~~-g~~-~~~~~l~~~-~~p~giavdp~~g~lyv~d~~~~-------~V~~~~~~~~~~~~~~~ 265 (430)
T 3tc9_A 196 TNDQNNNDRPNNYILTRE-SGF-KVITELTKG-QNCNGAETHPINGELYFNSWNAG-------QVFRYDFTTQETTPLFT 265 (430)
T ss_dssp EECCSCTTSEEEEEEEGG-GTS-CSEEEEEEC-SSCCCEEECTTTCCEEEEETTTT-------EEEEEETTTTEEEEEEE
T ss_pred EeCCCCcccceEEEEeCC-Cce-eeeeeeccC-CCceEEEEeCCCCEEEEEECCCC-------EEEEEECCCCcEEEEEE
Confidence 775433 2356667655 432 001222221 23456789995555777765432 49999998877644443
Q ss_pred cCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC
Q 039497 531 AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589 (642)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 589 (642)
..... ....++|+|||++||++..... .|++++.++
T Consensus 266 ~~~~~-------~P~gia~~pdG~~lyv~d~~~~----------------~I~~~~~d~ 301 (430)
T 3tc9_A 266 IQDSG-------WEFHIQFHPSGNYAYIVVVNQH----------------YILRSDYDW 301 (430)
T ss_dssp CSSSS-------CCEEEEECTTSSEEEEEETTTT----------------EEEEEEEET
T ss_pred cCCCC-------cceeEEEcCCCCEEEEEECCCC----------------EEEEEeCCc
Confidence 22212 3567999999998888865432 788887765
No 267
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.88 E-value=0.0003 Score=70.37 Aligned_cols=193 Identities=11% Similarity=0.052 Sum_probs=105.1
Q ss_pred ccEEcCCCCEEEEEecCC---CceeEEEEECCCCCeeE-Eeec-------CCceeeeeecCCCEEEEEEcCCCcccCCCe
Q 039497 334 FPSFSPDGGLIVFNHDFE---LNAGIKIAKSDGSKRWT-LIKD-------RTAFYNSWSPTEKHVIYTSTGPIFQSERAT 402 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~---~~~~l~~~d~~~~~~~~-l~~~-------~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 402 (642)
.+.++++|+ |+++.... ....|+++|+++++... +... .....++++|++..++++.... .....
T Consensus 71 gv~~d~~g~-L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~---~~~~~ 146 (343)
T 2qe8_A 71 GIKSDGNGI-VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP---DDKAA 146 (343)
T ss_dssp EEEECSSSE-EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS---GGGCE
T ss_pred EEEEcCCCc-EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc---CCCCe
Confidence 457889886 44443210 13689999998877433 3221 2346789998877777765310 02334
Q ss_pred EEEEEEEeecCCCCCCCCCccccceEEccc----------------------c------CCCCccCcEECCCCCeEEEEe
Q 039497 403 VQIARVSFQLDPSDDNNREEIPCDVKILTK----------------------E------ETGNNAFPSCSPDGKFLVFRS 454 (642)
Q Consensus 403 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~----------------------~------~~~~~~~~~~SpDg~~l~~~~ 454 (642)
+.++++.. +. ..+.+.. . .......++|||||+.|++..
T Consensus 147 i~v~d~~~---------g~----~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~ 213 (343)
T 2qe8_A 147 LIRVDLQT---------GL----AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSP 213 (343)
T ss_dssp EEEEETTT---------CC----EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEE
T ss_pred EEEEECCC---------CC----EEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEe
Confidence 44444321 10 1111100 0 001234589999999999887
Q ss_pred CCCCceeEEEEECC---CCccc-----cceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE
Q 039497 455 GRSGHKNLFVLDAV---NGEFN-----GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526 (642)
Q Consensus 455 ~~~g~~~l~~~d~~---~g~~~-----~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 526 (642)
... ..||.++.. .+... ..+..+ ........++++++|+ |+++.... ..|++||.++++..
T Consensus 214 ~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~~G~-l~va~~~~-------~~V~~~d~~~G~~~ 282 (343)
T 2qe8_A 214 MHS--TSMYRIKSADLSNLQLTDAELGSKIERY-SEKPICDGISIDKDHN-IYVGDLAH-------SAIGVITSADRAYK 282 (343)
T ss_dssp SSC--SEEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECTTCC-EEEEEGGG-------TEEEEEETTTTEEE
T ss_pred CCC--CeEEEEEHHHhcCCCCChhhhhcceEec-ccCCCCceEEECCCCC-EEEEccCC-------CeEEEEECCCCCEE
Confidence 533 389998853 11100 000111 1112345679999996 55555432 34999999455555
Q ss_pred EeeecCCCCCCCcccccccceEEcCCCCEEEEEEec
Q 039497 527 RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANL 562 (642)
Q Consensus 527 ~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~ 562 (642)
.+....... .+..++|++||+ |++++..
T Consensus 283 ~~~~~~~~~-------~p~~va~~~~g~-l~v~~~~ 310 (343)
T 2qe8_A 283 LLVTDEKLS-------WTDSFNFGSDGY-LYFDCNQ 310 (343)
T ss_dssp EEEECGGGS-------CEEEEEECTTSC-EEEEECC
T ss_pred EEEECCcee-------cCCeeEECCCCc-EEEEeCc
Confidence 554321111 467899999987 5555543
No 268
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.87 E-value=0.0022 Score=63.37 Aligned_cols=210 Identities=14% Similarity=0.123 Sum_probs=110.7
Q ss_pred cEEcC-CCCEEEEEecCCCceeEEEEECCCCCeeEEee--c----CCceeeeeec-CCCEEEEEEcCCCcc---------
Q 039497 335 PSFSP-DGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--D----RTAFYNSWSP-TEKHVIYTSTGPIFQ--------- 397 (642)
Q Consensus 335 ~~~sp-dg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~----~~~~~~~~sp-dg~~l~~~~~~~~~~--------- 397 (642)
+.+.+ +| .|++.... ..|++++.+++..+.+.. . .....+++.| +|+ |+++.....+.
T Consensus 85 i~~~~~~g-~l~v~d~~---~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 85 ISYNLQNN-QLYIVDCY---YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp EEEETTTT-EEEEEETT---TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHH
T ss_pred EEEcCCCC-cEEEEECC---CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehc
Confidence 46776 55 45554332 348888888766555432 1 2356788999 885 66665321000
Q ss_pred cCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcccccee
Q 039497 398 SERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR 477 (642)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~ 477 (642)
.....-.++.++. + ++ ....+.... .....++|+|||+.|+++.. +...|++++++++.. ...+
T Consensus 160 ~~~~~g~v~~~d~--~-----~~-----~~~~~~~~~-~~p~gia~~~dg~~lyv~d~--~~~~I~~~~~~~~~~-~~~~ 223 (322)
T 2fp8_A 160 TSDKTGRLIKYDP--S-----TK-----ETTLLLKEL-HVPGGAEVSADSSFVLVAEF--LSHQIVKYWLEGPKK-GTAE 223 (322)
T ss_dssp HTCCCEEEEEEET--T-----TT-----EEEEEEEEE-SCCCEEEECTTSSEEEEEEG--GGTEEEEEESSSTTT-TCEE
T ss_pred ccCCCceEEEEeC--C-----CC-----EEEEeccCC-ccCcceEECCCCCEEEEEeC--CCCeEEEEECCCCcC-Cccc
Confidence 0112345677765 2 22 333332222 34456899999998888764 334899999875321 0012
Q ss_pred eCCCCCCcccceeEecCCCEEEEEecCC-CC--CCCCceeEEEEeCCCCceEEeeecC-CCCCCCcccccccceEEcCCC
Q 039497 478 QLTDGPWIDTMPSWSPKGDLIAFSSNRH-NP--DNVEAFSLYVIKPDGSGLRRIHVAG-PEGSGDVDRERINHVCFSADG 553 (642)
Q Consensus 478 ~l~~~~~~~~~~~~spdG~~l~~~~~~~-~~--~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~S~Dg 553 (642)
.+....+ ...++++++|+ |+++.... .. .......|+++|.++.....+.... ... ..+..+.+ ++
T Consensus 224 ~~~~~~g-P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~------~~~~~~~~--~~ 293 (322)
T 2fp8_A 224 VLVKIPN-PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAG------EHFEQIQE--HD 293 (322)
T ss_dssp EEEECSS-EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTT------SCCCEEEE--ET
T ss_pred eEEeCCC-CCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCcc------ccceEEEE--eC
Confidence 2222223 45678999998 55554320 00 0001346999998765555554321 100 02344445 34
Q ss_pred CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc
Q 039497 554 EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG 591 (642)
Q Consensus 554 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 591 (642)
..|++++.... .|.+++++.+.
T Consensus 294 g~L~v~~~~~~----------------~i~~~~~~~~~ 315 (322)
T 2fp8_A 294 GLLYIGTLFHG----------------SVGILVYDKKG 315 (322)
T ss_dssp TEEEEECSSCS----------------EEEEEEC----
T ss_pred CEEEEeecCCC----------------ceEEEeccccc
Confidence 56777764332 78888876544
No 269
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.83 E-value=0.031 Score=61.25 Aligned_cols=79 Identities=9% Similarity=-0.030 Sum_probs=49.0
Q ss_pred eeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce
Q 039497 513 FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL 592 (642)
Q Consensus 513 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 592 (642)
..|+.+|+.+++..--...+. ......++.+|..+++.+.+ +.|+.+|..++++
T Consensus 457 g~l~A~D~~tG~~~W~~~~~~---------~~~~g~~~~~g~~v~~g~~d-----------------g~l~a~D~~tG~~ 510 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHVS---------PWNGGTLTTAGNVVFQGTAD-----------------GRLVAYHAATGEK 510 (677)
T ss_dssp EEEEEEETTTTEEEEEEEESS---------SCCCCEEEETTTEEEEECTT-----------------SEEEEEETTTCCE
T ss_pred cEEEEEeCCCCcEEeecCCCC---------CCcCcceEeCCCEEEEECCC-----------------CcEEEEECCCCce
Confidence 679999999887643222221 12345677888877765433 2899999987764
Q ss_pred -eeccCC-CCCCCCcEEecCCceEEee
Q 039497 593 -RRLTWN-GYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 593 -~~lt~~-~~~~~~~~~s~dg~~~~~~ 617 (642)
..+... +....-..|+.||+.++..
T Consensus 511 lw~~~~~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 511 LWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp EEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred eeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence 334332 2333455778999766554
No 270
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=97.82 E-value=0.00027 Score=71.16 Aligned_cols=183 Identities=8% Similarity=-0.010 Sum_probs=109.8
Q ss_pred CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEE
Q 039497 374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453 (642)
Q Consensus 374 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~ 453 (642)
.+..+++++....++... ...+.+|.++...+......+. .........+ . +.+++| ||++|+..
T Consensus 39 ~~nlLais~~~gll~a~~--------~~~l~v~~~~~l~~~~~~~~~~---~~~~~~~~lp-~-V~~l~f--d~~~L~v~ 103 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAAS--------GSKAVVGELQLLRDHITSDSTP---LTFKWEKEIP-D-VIFVCF--HGDQVLVS 103 (388)
T ss_dssp CCBCEEEETTTTEEEEEE--------TTEEEEEEHHHHHHHHHSSSCC---CCCSEEEECT-T-EEEEEE--ETTEEEEE
T ss_pred cccEEEEcCCCCEEEEeC--------CCEEEEEEhhHhhhhhcccccc---ccceEEeeCC-C-eeEEEE--CCCEEEEE
Confidence 467789999988777665 3567777654300000000000 0111222233 4 788899 99999887
Q ss_pred eCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCC
Q 039497 454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP 533 (642)
Q Consensus 454 ~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~ 533 (642)
. + ..|.+||+.+-.. ...+......+..+.+.+. .++....++. |++||++.+....+..
T Consensus 104 ~--~--~~l~v~dv~sl~~---~~~~~~~~~~v~~i~~~~p--~~av~~~dG~--------L~v~dl~~~~~~~~~~--- 163 (388)
T 1xip_A 104 T--R--NALYSLDLEELSE---FRTVTSFEKPVFQLKNVNN--TLVILNSVND--------LSALDLRTKSTKQLAQ--- 163 (388)
T ss_dssp E--S--SEEEEEESSSTTC---EEEEEECSSCEEEEEECSS--EEEEEETTSE--------EEEEETTTCCEEEEEE---
T ss_pred c--C--CcEEEEEchhhhc---cCccceeecceeeEEecCC--CEEEEECCCC--------EEEEEccCCccccccC---
Confidence 2 2 3799999865432 1222222223344455443 2666655553 9999998877665432
Q ss_pred CCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc---eeecc---------CCCCC
Q 039497 534 EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG---LRRLT---------WNGYE 601 (642)
Q Consensus 534 ~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~lt---------~~~~~ 601 (642)
.+..++|||+| +++...++ .|..|+.++++ ...|. .+...
T Consensus 164 ---------~Vs~v~WSpkG--~~vg~~dg-----------------~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~ 215 (388)
T 1xip_A 164 ---------NVTSFDVTNSQ--LAVLLKDR-----------------SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYS 215 (388)
T ss_dssp ---------SEEEEEECSSE--EEEEETTS-----------------CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSE
T ss_pred ---------CceEEEEcCCc--eEEEEcCC-----------------cEEEEcCCCccccccceecCCcccccccCCCee
Confidence 46789999999 45555543 67777777776 33452 13456
Q ss_pred CCCcEEecCCceEEeecC
Q 039497 602 NGTPAWHPGNQLDLGKLR 619 (642)
Q Consensus 602 ~~~~~~s~dg~~~~~~~~ 619 (642)
+.++.|.++++++++-..
T Consensus 216 V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 216 PLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp EEEEEESSSSEEEEEEEC
T ss_pred EEEEEEecCCeEEEEEcC
Confidence 788999999999876433
No 271
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.79 E-value=0.00078 Score=63.12 Aligned_cols=186 Identities=14% Similarity=0.037 Sum_probs=107.0
Q ss_pred ceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEe
Q 039497 375 AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRS 454 (642)
Q Consensus 375 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~ 454 (642)
...+.|+ ++.|+.+.. ..+.++.+++.. ++ ....+ ... ........++|+.|+...
T Consensus 57 tqGL~~~--~~~Ly~stG------~~g~v~~iD~~T---------gk----v~~~~-l~~--~~FgeGit~~g~~Ly~lt 112 (268)
T 3nok_A 57 TQGLVFH--QGHFFESTG------HQGTLRQLSLES---------AQ----PVWME-RLG--NIFAEGLASDGERLYQLT 112 (268)
T ss_dssp EEEEEEE--TTEEEEEET------TTTEEEECCSSC---------SS----CSEEE-ECT--TCCEEEEEECSSCEEEEE
T ss_pred cceEEEE--CCEEEEEcC------CCCEEEEEECCC---------Cc----EEeEE-CCC--CcceeEEEEeCCEEEEEE
Confidence 4566675 567777663 344554444433 32 33333 222 222233566788888887
Q ss_pred CCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCC
Q 039497 455 GRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534 (642)
Q Consensus 455 ~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 534 (642)
.+++ .++++|.++.+. +..+.... .....++||+.|+.+... ..|+.+|.++.+...-..-...
T Consensus 113 w~~~--~v~V~D~~Tl~~---~~ti~~~~---eGwGLt~Dg~~L~vSdGs--------~~l~~iDp~T~~v~~~I~V~~~ 176 (268)
T 3nok_A 113 WTEG--LLFTWSGMPPQR---ERTTRYSG---EGWGLCYWNGKLVRSDGG--------TMLTFHEPDGFALVGAVQVKLR 176 (268)
T ss_dssp SSSC--EEEEEETTTTEE---EEEEECSS---CCCCEEEETTEEEEECSS--------SEEEEECTTTCCEEEEEECEET
T ss_pred ccCC--EEEEEECCcCcE---EEEEeCCC---ceeEEecCCCEEEEECCC--------CEEEEEcCCCCeEEEEEEeCCC
Confidence 6543 899999999886 56665432 234566889988877633 2499999988765433221111
Q ss_pred CCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee-eccCC------------C-C
Q 039497 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR-RLTWN------------G-Y 600 (642)
Q Consensus 535 ~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~lt~~------------~-~ 600 (642)
+ .+-.....+.|. || .|+...... ..|.++|..++++. .|... . .
T Consensus 177 g---~~v~~lNeLe~~-dG-~lyanvw~s----------------~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~ 235 (268)
T 3nok_A 177 G---QPVELINELECA-NG-VIYANIWHS----------------SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEA 235 (268)
T ss_dssp T---EECCCEEEEEEE-TT-EEEEEETTC----------------SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTC
T ss_pred C---cccccccccEEe-CC-EEEEEECCC----------------CeEEEEeCCCCcEEEEEECCCCcccccccccCcCC
Confidence 1 000012345665 77 466444222 28999999988753 22211 1 1
Q ss_pred CCCCcEEecCC-ceEEeecCCC
Q 039497 601 ENGTPAWHPGN-QLDLGKLRLE 621 (642)
Q Consensus 601 ~~~~~~~s~dg-~~~~~~~~~~ 621 (642)
....++|+|++ ++|++...-.
T Consensus 236 vlNGIA~dp~~~rlfVTGK~Wp 257 (268)
T 3nok_A 236 VLNGIAVEPGSGRIFMTGKLWP 257 (268)
T ss_dssp CEEEEEECTTTCCEEEEETTCS
T ss_pred ceEEEEEcCCCCEEEEeCCCCC
Confidence 22568999976 7778876654
No 272
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.77 E-value=0.043 Score=55.13 Aligned_cols=105 Identities=14% Similarity=0.184 Sum_probs=56.6
Q ss_pred ccccCCCEEEEEEeccCCCcccccccceEEEEccCCceE-ecccCC--------CccCCceeCCCCcEEEEEecCCCCCC
Q 039497 95 RPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFT-RLTPYG--------VVDYSPSVSYSGKFIAVASYESRPWP 165 (642)
Q Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~lt~~~--------~~~~~~~~SPDG~~la~~~~~~~~~~ 165 (642)
.|.+.++.|++.... +.|+.++.++|+.. +..... ..........++..|.+...+.
T Consensus 48 ~p~v~~~~v~~~~~~----------g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g---- 113 (376)
T 3q7m_A 48 HPALADNVVYAADRA----------GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKA---- 113 (376)
T ss_dssp CCEEETTEEEEECTT----------SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTS----
T ss_pred ccEEECCEEEEEcCC----------CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCC----
Confidence 466677777765432 25888888777653 222111 0111111223455666554333
Q ss_pred CCCCCCeeeEEEEEecCCCceeEeecCC---CcceEeeCCeEEEEEecCCCceEEEEEecCCCc
Q 039497 166 GEFHELNTDIVVFQESDPNKRVIVCERG---GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENL 226 (642)
Q Consensus 166 ~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~ 226 (642)
.|+.++.++|+..--..... ..|.. .++.+++.. .++ .|+.++..+|+
T Consensus 114 --------~l~a~d~~tG~~~W~~~~~~~~~~~p~~-~~~~v~v~~--~~g--~l~~~d~~tG~ 164 (376)
T 3q7m_A 114 --------QVYALNTSDGTVAWQTKVAGEALSRPVV-SDGLVLIHT--SNG--QLQALNEADGA 164 (376)
T ss_dssp --------EEEEEETTTCCEEEEEECSSCCCSCCEE-ETTEEEEEC--TTS--EEEEEETTTCC
T ss_pred --------EEEEEECCCCCEEEEEeCCCceEcCCEE-ECCEEEEEc--CCC--eEEEEECCCCc
Confidence 68999999888653333221 23443 355555433 234 78889988773
No 273
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.75 E-value=0.0035 Score=62.70 Aligned_cols=151 Identities=18% Similarity=0.199 Sum_probs=79.0
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-------cCCceeeeeecC---CCEEEEEEcCCCcccCCCeE
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-------DRTAFYNSWSPT---EKHVIYTSTGPIFQSERATV 403 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-------~~~~~~~~~spd---g~~l~~~~~~~~~~~~~~~~ 403 (642)
.++|.|||+ |++... . ..|++++ ++ +...+.. ......++++|| +..|+++.... ......
T Consensus 35 ~ia~~pdG~-l~V~e~-~--g~I~~i~-~g-~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~---~~~~~~ 105 (352)
T 2ism_A 35 ALAFLPDGG-MLIAER-P--GRIRLFR-EG-RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVA---EGGLRN 105 (352)
T ss_dssp EEEECTTSC-EEEEET-T--TEEEEEE-TT-EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEC---TTSSEE
T ss_pred EEEEcCCCe-EEEEeC-C--CeEEEEE-CC-CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecC---CCCCcc
Confidence 568999998 444432 2 6888888 43 3333221 235678899999 77777765310 001124
Q ss_pred EEEEEEeecCCCCCCCCCccccceEE----cc--ccCCCCccCcEECCCCCeEEEEeCCC-----------CceeEEEEE
Q 039497 404 QIARVSFQLDPSDDNNREEIPCDVKI----LT--KEETGNNAFPSCSPDGKFLVFRSGRS-----------GHKNLFVLD 466 (642)
Q Consensus 404 ~l~~~~~~~~~~~~~~~~~~~~~~~~----l~--~~~~~~~~~~~~SpDg~~l~~~~~~~-----------g~~~l~~~d 466 (642)
.|+.++. + ++ .+. ..+. +. .........++|+||| +|+++.... ....|++++
T Consensus 106 ~v~r~~~--~-----~~-~~~-~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~ 175 (352)
T 2ism_A 106 QVVRLRH--L-----GE-RGV-LDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLT 175 (352)
T ss_dssp EEEEEEE--C-----SS-CEE-EEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEEC
T ss_pred EEEEEEe--C-----CC-CcC-ceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEc
Confidence 5666665 2 11 110 1111 22 1111233578999999 576664321 124799999
Q ss_pred CCCCcccc----------ceeeCCCCCCcccceeEecCCCEEEEEecC
Q 039497 467 AVNGEFNG----------DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504 (642)
Q Consensus 467 ~~~g~~~~----------~~~~l~~~~~~~~~~~~spdG~~l~~~~~~ 504 (642)
.+ |+.+. ..+.+.........++|+|+...|++....
T Consensus 176 ~d-G~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g 222 (352)
T 2ism_A 176 PE-GEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHG 222 (352)
T ss_dssp TT-SSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEEC
T ss_pred CC-CCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcC
Confidence 87 42100 012222222334567999944446666543
No 274
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=97.74 E-value=0.0094 Score=65.23 Aligned_cols=262 Identities=11% Similarity=0.011 Sum_probs=141.6
Q ss_pred eecCCcEEEEEEeccCCceeeEEEEEeecCC----CCc--c----------cCCeecCCCCEEEEEEeecCC-C--CCCc
Q 039497 250 AFHDGKRLAVATRRKNRNFRHIEIYDLTLNP----NFH--H----------YNPFVSANSEFIGYHRFRGES-T--EGQS 310 (642)
Q Consensus 250 ~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~----~~~--~----------~~~~~spDg~~l~~~~~~~~~-~--~~~~ 310 (642)
++|||+++++...++|+....++++|+.++. ... . ..++|. |...+++.+..+.. . .+..
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBCTTSSB
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCcCcCCCC
Confidence 7899999999999999999999999994321 111 1 233787 55666664322221 1 1223
Q ss_pred ccceEeeccCCCceeE-EeeeCCC----ccEEcCCCCE----EEEE-ecCCCceeEEEEECCC--CCeeEEeecCCceee
Q 039497 311 TIPHLEPVASPVKELR-MLRLNGS----FPSFSPDGGL----IVFN-HDFELNAGIKIAKSDG--SKRWTLIKDRTAFYN 378 (642)
Q Consensus 311 ~~~~~~~~~~~~~~~~-~~~~~~~----~~~~spdg~~----l~~~-~~~~~~~~l~~~d~~~--~~~~~l~~~~~~~~~ 378 (642)
..++...+..+..+-. +...... .+..++|++. ++.. ....-...+|+.+++. ++..++..... ..+
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~ 294 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSD-ATL 294 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTT-CEE
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCc-ceE
Confidence 4456666654432211 2222111 2344677774 3332 2223447889998764 33344433222 233
Q ss_pred eeecCCCEEEEEEcCCCcc--cCCCeEEEEEEEeecCCCCCCCCCcc---ccceEE-ccccCCCCccCcEECCCCCeEEE
Q 039497 379 SWSPTEKHVIYTSTGPIFQ--SERATVQIARVSFQLDPSDDNNREEI---PCDVKI-LTKEETGNNAFPSCSPDGKFLVF 452 (642)
Q Consensus 379 ~~spdg~~l~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~-l~~~~~~~~~~~~~SpDg~~l~~ 452 (642)
..+++++ +++......-. .+-.+..|+.++. + +.... ....+. ++......+..+.|+.| +|++
T Consensus 295 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~l~~ 364 (711)
T 4hvt_A 295 QGSFKEY-VFWLLRSDWKFKSHNIKAGSLVALHF--T-----DLLKTESDKTSLKILFTPTANEVFNFISTTKD--RVFL 364 (711)
T ss_dssp EEEETTE-EEEECSSCEEETTEEECTTCEEEEEG--G-----GGGSCGGGCTTCEEEECCCTTEEEEEEEECSS--CEEE
T ss_pred eeeECCE-EEEEECcccccccccCCCCeEEEEEC--C-----cccccccccccceEEECCCCCCeEEEEEEECC--EEEE
Confidence 4566664 44433210000 0012334555554 2 11000 003333 44433245556777765 6777
Q ss_pred EeCCCCceeEEEEECCCCccccceee-CCCC-CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497 453 RSGRSGHKNLFVLDAVNGEFNGDIRQ-LTDG-PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530 (642)
Q Consensus 453 ~~~~~g~~~l~~~d~~~g~~~~~~~~-l~~~-~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 530 (642)
...+++..+|+++++.+|+. ..+. +.-. .+.+.....+++++.+++...... .+..+|++|+. ++.+.+..
T Consensus 365 ~~~~~~~~~l~~~~~~~g~~--~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~----~P~~~~~~d~~-~~~~~l~~ 437 (711)
T 4hvt_A 365 ATYDNVVAKVVTFTLENEQW--TKPVVLKLPYQNAIFGMSSYEEEEEALITIENSI----VPPTIYLWVKT-HELKIIRK 437 (711)
T ss_dssp EEEETTEEEEEEECEETTEE--CCCEEECCCSTTCEEEEECCTTCSCEEEEEECSS----SCCEEEEECTT-SCEEEEEC
T ss_pred EEEECCEEEEEEEECCCCce--EEEeccCCCCCeEEEEEeecCcCCEEEEEEecCC----CCCEEEEEeCC-CcEEEEec
Confidence 77777888999999877741 0233 3221 233444566788887777766543 56789999998 67766664
No 275
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.74 E-value=0.0013 Score=64.96 Aligned_cols=165 Identities=13% Similarity=0.083 Sum_probs=93.1
Q ss_pred CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC----CCCCcccceeEecC---CCEEEEEecCCCCC
Q 039497 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT----DGPWIDTMPSWSPK---GDLIAFSSNRHNPD 508 (642)
Q Consensus 436 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~----~~~~~~~~~~~spd---G~~l~~~~~~~~~~ 508 (642)
.....++|.|||+ |+++.... ..|++++.++|+. ..+..+. ........++++|| +.+||+.....
T Consensus 32 ~~P~~ia~~pdG~-llVter~~--G~I~~v~~~~g~~-~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~--- 104 (347)
T 3das_A 32 NSPWGLAPLPGGD-LLVSSRDE--ATITRVDAKTGRK-TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA--- 104 (347)
T ss_dssp SSEEEEEECTTSC-EEEEETTT--CEEEEECTTTCCE-EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS---
T ss_pred CCceEEEEcCCCc-EEEEEecC--CEEEEEECCCCcE-eeecccCceeecCCCCceeeEeccccccCCEEEEEEecC---
Confidence 4566789999997 44444323 3899998766653 1111121 22334466799996 45666654322
Q ss_pred CCCceeEEEEeCCCC--------ceEEeee-cCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCC
Q 039497 509 NVEAFSLYVIKPDGS--------GLRRIHV-AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPY 579 (642)
Q Consensus 509 ~~~~~~l~~~d~~~~--------~~~~l~~-~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~ 579 (642)
....|.++.++.+ +.+.|.. ..... ......+.|.|||. ||++..+.+..+.. ...-...
T Consensus 105 --~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~-----~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~---qd~~~~~ 173 (347)
T 3das_A 105 --SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGV-----IHNGGRIAFGPDKM-LYAGTGESGDTGLS---QDRKSLG 173 (347)
T ss_dssp --SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCS-----SCCCCCEEECTTSC-EEEECBCTTCGGGT---TCTTCST
T ss_pred --CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCC-----CccCccccCCCCCC-EEEEECCCCCCccc---cCCCCCC
Confidence 2346899988662 2233322 11000 01336799999995 77775443221100 0000135
Q ss_pred CcEEEEEcCCC--------ceeeccCCCCCCCCcEEecCCceEEeec
Q 039497 580 GDLYVVKLDGS--------GLRRLTWNGYENGTPAWHPGNQLDLGKL 618 (642)
Q Consensus 580 ~~l~~~~~~~~--------~~~~lt~~~~~~~~~~~s~dg~~~~~~~ 618 (642)
..|++++.++. ....+...-.....++|+|+|+++++..
T Consensus 174 G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~ 220 (347)
T 3das_A 174 GKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEF 220 (347)
T ss_dssp TCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEEC
T ss_pred CEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEec
Confidence 69999999876 2223333334557889999999887763
No 276
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.70 E-value=0.0008 Score=69.47 Aligned_cols=160 Identities=17% Similarity=0.262 Sum_probs=94.8
Q ss_pred CceeeeeecC--CCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEE
Q 039497 374 TAFYNSWSPT--EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451 (642)
Q Consensus 374 ~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~ 451 (642)
....++|+|+ +..|+++.. . -.|+.++. . ++ ....+.... .....+++++||+ |+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~-------~--~~I~~id~--~-----~g-----~v~~~~~~~-~~P~giavd~dG~-ly 196 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQ-------R--DAFRHVDF--V-----NQ-----YVDIKTTNI-GQCADVNFTLNGD-MV 196 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECB-------T--SCEEEEET--T-----TT-----EEEEECCCC-SCEEEEEECTTCC-EE
T ss_pred CCceEEEccccCCCEEEEEeC-------C--CCEEEEEC--C-----CC-----EEEEeecCC-CCccEEEECCCCC-EE
Confidence 3567889985 566776652 1 34555654 2 23 455554433 4567789999999 76
Q ss_pred EEeCCC--CceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce-EEe
Q 039497 452 FRSGRS--GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL-RRI 528 (642)
Q Consensus 452 ~~~~~~--g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l 528 (642)
++.... ....++.++...+.. ....+.. ......++++|++..||+..... ..|++++.+++.. +.+
T Consensus 197 Vad~~~~~~~~gv~~~~~~~~~~--~~~~~~~-~~~P~giavd~~~G~lyv~d~~~-------~~V~~~d~~~g~~~~~~ 266 (433)
T 4hw6_A 197 VVDDQSSDTNTGIYLFTRASGFT--ERLSLCN-ARGAKTCAVHPQNGKIYYTRYHH-------AMISSYDPATGTLTEEE 266 (433)
T ss_dssp EEECCSCTTSEEEEEECGGGTTC--CEEEEEE-CSSBCCCEECTTTCCEEECBTTC-------SEEEEECTTTCCEEEEE
T ss_pred EEcCCCCcccceEEEEECCCCee--ccccccc-cCCCCEEEEeCCCCeEEEEECCC-------CEEEEEECCCCeEEEEE
Confidence 665421 123466666543321 0012221 12335678999444577776543 3599999987766 444
Q ss_pred eecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC
Q 039497 529 HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589 (642)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 589 (642)
....... ....++|+|||++||++..... .|++++.++
T Consensus 267 ~~~~~~~-------~~~~ia~dpdG~~LYvad~~~~----------------~I~~~~~d~ 304 (433)
T 4hw6_A 267 VMMDTKG-------SNFHIVWHPTGDWAYIIYNGKH----------------CIYRVDYNR 304 (433)
T ss_dssp EECSCCS-------SCEEEEECTTSSEEEEEETTTT----------------EEEEEEBCT
T ss_pred eccCCCC-------CcccEEEeCCCCEEEEEeCCCC----------------EEEEEeCCC
Confidence 3322211 2235999999999988875432 799988763
No 277
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.69 E-value=0.00074 Score=70.00 Aligned_cols=165 Identities=10% Similarity=0.170 Sum_probs=100.7
Q ss_pred Cceeeeeec-CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC---CCCccCcEE------
Q 039497 374 TAFYNSWSP-TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE---TGNNAFPSC------ 443 (642)
Q Consensus 374 ~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~------ 443 (642)
....++|+| +...|+++.. ....|+.++. + ++ ....+.... ......++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~--------~~~~i~~ID~--~-----~~-----~v~~l~~~~~~~~~~p~~ia~~~~~~~ 199 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYD--------GHKAIQLIDL--K-----NR-----MLSSPLNINTIPTNRIRSIAFNKKIEG 199 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEE--------TEEEEEEEET--T-----TT-----EEEEEECCTTSSCSBEEEEEECCCBTT
T ss_pred CCCEEEEccCCCCEEEEEEC--------CCCeEEEEEC--C-----CC-----EEEEEEccCccccCCCcEEEEeecccc
Confidence 355778898 5777777763 2345777776 3 22 444443221 023566889
Q ss_pred -CCCCCeEEEEeCCCC----ceeEEEEECCC-Ccccc-c-eeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeE
Q 039497 444 -SPDGKFLVFRSGRSG----HKNLFVLDAVN-GEFNG-D-IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSL 515 (642)
Q Consensus 444 -SpDg~~l~~~~~~~g----~~~l~~~d~~~-g~~~~-~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l 515 (642)
+++|++|+++....+ ...+++++... |+... . ...+... .....++.+|+++.||+...... .|
T Consensus 200 ~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g-------~V 271 (496)
T 3kya_A 200 YADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKG-------QV 271 (496)
T ss_dssp TBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTT-------EE
T ss_pred cCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCC-------EE
Confidence 999998888876542 34688887543 34300 0 0122211 12346788998888888876543 49
Q ss_pred EEEeCC-------CCce------------EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCC
Q 039497 516 YVIKPD-------GSGL------------RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQF 576 (642)
Q Consensus 516 ~~~d~~-------~~~~------------~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~ 576 (642)
+++|++ ++.. +.+....... ....++|+|+|+.||++.....
T Consensus 272 ~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~-------~p~~ia~~p~G~~lYvaD~~~h------------ 332 (496)
T 3kya_A 272 FRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPS-------WEFQIFIHPTGKYAYFGVINNH------------ 332 (496)
T ss_dssp EEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSS-------CCEEEEECTTSSEEEEEETTTT------------
T ss_pred EEEecccccccccCceeecccccccccccceeEecCCCC-------CceEEEEcCCCCEEEEEeCCCC------------
Confidence 999997 5543 2332222111 3467999999998888765432
Q ss_pred CCCCcEEEEEcCC
Q 039497 577 QPYGDLYVVKLDG 589 (642)
Q Consensus 577 ~~~~~l~~~~~~~ 589 (642)
.|++++.++
T Consensus 333 ----~I~kid~dg 341 (496)
T 3kya_A 333 ----YFMRSDYDE 341 (496)
T ss_dssp ----EEEEEEEET
T ss_pred ----EEEEEecCC
Confidence 899977665
No 278
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.69 E-value=0.0044 Score=61.07 Aligned_cols=198 Identities=17% Similarity=0.227 Sum_probs=111.6
Q ss_pred ceeEEEEECCCCCeeE-Eee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497 353 NAGIKIAKSDGSKRWT-LIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL 430 (642)
Q Consensus 353 ~~~l~~~d~~~~~~~~-l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 430 (642)
...|+.++.+ ++... ... ...+..+...++|+ |++... .. .|+.++. .+. ....+
T Consensus 116 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~-------~~--~l~~~d~--------~g~----~~~~~ 172 (330)
T 3hxj_A 116 DGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSN-------DN--YLYAINP--------DGT----EKWRF 172 (330)
T ss_dssp TSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECT-------TS--EEEEECT--------TSC----EEEEE
T ss_pred CCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcC-------CC--EEEEECC--------CCC----EeEEE
Confidence 3578888887 44322 222 33345666666776 555432 23 3444443 111 22222
Q ss_pred cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCC
Q 039497 431 TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV 510 (642)
Q Consensus 431 ~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~ 510 (642)
.... .....+...++|+ |++.+ ..|+.+| .+|+. ..........+..+..+++|+ |++....+.
T Consensus 173 ~~~~-~~~~~~~~d~~g~-l~v~t-----~~l~~~d-~~g~~---~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~g---- 236 (330)
T 3hxj_A 173 KTND-AITSAASIGKDGT-IYFGS-----DKVYAIN-PDGTE---KWNFYAGYWTVTRPAISEDGT-IYVTSLDGH---- 236 (330)
T ss_dssp ECSS-CCCSCCEECTTCC-EEEES-----SSEEEEC-TTSCE---EEEECCSSCCCSCCEECTTSC-EEEEETTTE----
T ss_pred ecCC-CceeeeEEcCCCE-EEEEe-----CEEEEEC-CCCcE---EEEEccCCcceeceEECCCCe-EEEEcCCCe----
Confidence 2222 3455677777776 44443 3699999 55664 344443334466778888886 555554332
Q ss_pred CceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497 511 EAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590 (642)
Q Consensus 511 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 590 (642)
|+.++.++.......... . ....+.+.++|. |++.+..+ .|+.++.++.
T Consensus 237 ----l~~~~~~g~~~~~~~~~~--~-------~~~~~~~~~~g~-l~v~t~~g-----------------gl~~~d~~g~ 285 (330)
T 3hxj_A 237 ----LYAINPDGTEKWRFKTGK--R-------IESSPVIGNTDT-IYFGSYDG-----------------HLYAINPDGT 285 (330)
T ss_dssp ----EEEECTTSCEEEEEECSS--C-------CCSCCEECTTSC-EEEECTTC-----------------EEEEECTTSC
T ss_pred ----EEEECCCCCEeEEeeCCC--C-------ccccceEcCCCe-EEEecCCC-----------------CEEEECCCCc
Confidence 899987665544443221 1 234566666665 66655432 6899987555
Q ss_pred ceeeccCCCCCCCCcEEecCCceEEeecCC
Q 039497 591 GLRRLTWNGYENGTPAWHPGNQLDLGKLRL 620 (642)
Q Consensus 591 ~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~ 620 (642)
.............++..+++|++++...+.
T Consensus 286 ~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G 315 (330)
T 3hxj_A 286 EKWNFETGSWIIATPVIDENGTIYFGTRNG 315 (330)
T ss_dssp EEEEEECSSCCCSCCEECTTCCEEEECTTS
T ss_pred EEEEEEcCCccccceEEcCCCEEEEEcCCC
Confidence 444444444556678888999988876543
No 279
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.67 E-value=0.019 Score=56.61 Aligned_cols=166 Identities=17% Similarity=0.118 Sum_probs=85.8
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--------cCCceeeeeecC---CCEEEEEEcCCCcccCCCe
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--------DRTAFYNSWSPT---EKHVIYTSTGPIFQSERAT 402 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--------~~~~~~~~~spd---g~~l~~~~~~~~~~~~~~~ 402 (642)
.++|.|||+ |++... ....|++++.+++....+.. ......++++|| +.+||+.... ...
T Consensus 36 ~ia~~pdG~-llVter--~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~------~~~ 106 (347)
T 3das_A 36 GLAPLPGGD-LLVSSR--DEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS------ASD 106 (347)
T ss_dssp EEEECTTSC-EEEEET--TTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC------SSS
T ss_pred EEEEcCCCc-EEEEEe--cCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec------CCC
Confidence 568999998 434332 24689998877666544431 334668899996 5566554321 223
Q ss_pred EEEEEEEeecCCCCCCCCCccccceE---EccccCCCCccCcEECCCCCeEEEEeCC-----------CCceeEEEEECC
Q 039497 403 VQIARVSFQLDPSDDNNREEIPCDVK---ILTKEETGNNAFPSCSPDGKFLVFRSGR-----------SGHKNLFVLDAV 468 (642)
Q Consensus 403 ~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~SpDg~~l~~~~~~-----------~g~~~l~~~d~~ 468 (642)
.+|.++.. ++... ....+..... .+..........+.|.|||+ |+++... .....|++++.+
T Consensus 107 ~~v~R~~~--~~~~~-~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d 182 (347)
T 3das_A 107 NRIVRMLY--DEKKP-SGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGKILRMTPD 182 (347)
T ss_dssp EEEEEEEB--CTTSC-TTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred CEEEEEEe--CCCCc-ccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence 46777766 31000 0001100111 12211112334589999994 6665422 124589999987
Q ss_pred CCcccc-----ceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEE
Q 039497 469 NGEFNG-----DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVI 518 (642)
Q Consensus 469 ~g~~~~-----~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~ 518 (642)
|+.+. ..+....+..+...++|+|+|+ |++...... ...+|.++
T Consensus 183 -G~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~~----~~deln~i 231 (347)
T 3das_A 183 -GEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQD----TWDELNAI 231 (347)
T ss_dssp -SSBCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCSS----SCEEEEEE
T ss_pred -CCccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCCC----CCceeeEE
Confidence 33100 0122222333456679999876 555544322 23455555
No 280
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.67 E-value=0.072 Score=58.41 Aligned_cols=82 Identities=18% Similarity=0.083 Sum_probs=50.3
Q ss_pred eeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCc
Q 039497 460 KNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV 539 (642)
Q Consensus 460 ~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 539 (642)
..|+.+|+.+|+. +-.+... .......++..|..|++.+.++ .|+.+|.++++..--.......
T Consensus 455 g~l~A~D~~tG~~---~W~~~~~-~~~~~g~~~tagglvf~gt~dg--------~l~a~D~~tG~~lw~~~~~~~~---- 518 (689)
T 1yiq_A 455 GKLIAWDPVKQQA---AWEVPYV-TIFNGGTLSTAGNLVFEGSADG--------RVIAYAADTGEKLWEQPAASGV---- 518 (689)
T ss_dssp EEEEEEETTTTEE---EEEEEES-SSCCCCEEEETTTEEEEECTTS--------EEEEEETTTCCEEEEEECSSCC----
T ss_pred eeEEEEECCCCCe---EeEccCC-CCccCccceECCCEEEEECCCC--------cEEEEECCCCccceeeeCCCCc----
Confidence 5799999999986 3333322 2223346677777776665443 3999999988764322222222
Q ss_pred ccccccceEEcCCCCEEEEEE
Q 039497 540 DRERINHVCFSADGEWLLFTA 560 (642)
Q Consensus 540 ~~~~~~~~~~S~Dg~~l~~~~ 560 (642)
....+.|+.||+..+...
T Consensus 519 ---~~~p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 519 ---MAAPVTYSVDGEQYVTFM 536 (689)
T ss_dssp ---CSCCEEEEETTEEEEEEE
T ss_pred ---ccCceEEEECCEEEEEEE
Confidence 234578899998655444
No 281
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.63 E-value=0.14 Score=57.25 Aligned_cols=211 Identities=11% Similarity=0.125 Sum_probs=116.3
Q ss_pred EcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 337 ~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
..++|+.|.+... ...|++++.++++.+.+.. ...+..+...++|+ |++.+. ..+ +.++.
T Consensus 413 ~d~~g~~lWigt~---~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~--------~Gl--~~~~~ 478 (795)
T 4a2l_A 413 VDEKKSLVYIGTH---AGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN-LWLGTL--------SAL--VRFNP 478 (795)
T ss_dssp EETTTTEEEEEET---TTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC-EEEEES--------SCE--EEEET
T ss_pred EcCCCCEEEEEeC---cCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC-EEEEec--------Cce--eEEeC
Confidence 3456663444332 2468889988877665542 23455566666665 444441 233 33333
Q ss_pred ecCCCCCCCCCccccceEEcccc------CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC---C
Q 039497 411 QLDPSDDNNREEIPCDVKILTKE------ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT---D 481 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~---~ 481 (642)
+ .+ ....+... ....+..+...++|+ |.+.+. . .|++++.++++ . .+. .
T Consensus 479 --~-----~~-----~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~-~---Gl~~~~~~~~~----~-~~~~~~~ 536 (795)
T 4a2l_A 479 --E-----QR-----SFTTIEKEKDGTPVVSKQITTLFRDSHKR-LWIGGE-E---GLSVFKQEGLD----I-QKASILP 536 (795)
T ss_dssp --T-----TT-----EEEECCBCTTCCBCCCCCEEEEEECTTCC-EEEEES-S---CEEEEEEETTE----E-EECCCSC
T ss_pred --C-----CC-----eEEEccccccccccCCceEEEEEECCCCC-EEEEeC-C---ceEEEeCCCCe----E-EEecCCC
Confidence 1 12 23333211 012345566777776 444443 2 49999987665 2 222 1
Q ss_pred C----CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec-CCCCCCCcccccccceEEcCCCCEE
Q 039497 482 G----PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVCFSADGEWL 556 (642)
Q Consensus 482 ~----~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~S~Dg~~l 556 (642)
. ...+..+..+++|+ |++....+ |+++|.++++.+..+.. +... ..+..+...++|+ |
T Consensus 537 ~~~l~~~~i~~i~~d~~g~-lWigT~~G---------l~~~d~~~~~~~~~~~~~gl~~------~~i~~i~~d~~g~-l 599 (795)
T 4a2l_A 537 VSNVTKLFTNCIYEASNGI-IWVGTREG---------FYCFNEKDKQIKRYNTTNGLPN------NVVYGILEDSFGR-L 599 (795)
T ss_dssp SCGGGGSCEEEEEECTTSC-EEEEESSC---------EEEEETTTTEEEEECGGGTCSC------SCEEEEEECTTSC-E
T ss_pred CCCCCCCeeEEEEECCCCC-EEEEeCCC---------ceeECCCCCcEEEeCCCCCCch------hheEEEEECCCCC-E
Confidence 1 11234556677887 55555543 99999988877665432 1111 1345666777886 5
Q ss_pred EEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCC------CCcEEecCCceEEeec
Q 039497 557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN------GTPAWHPGNQLDLGKL 618 (642)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~------~~~~~s~dg~~~~~~~ 618 (642)
++.... .|..++..++..+.++...+.. .+....++|+++++..
T Consensus 600 Wi~t~~------------------Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~ 649 (795)
T 4a2l_A 600 WLSTNR------------------GISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGI 649 (795)
T ss_dssp EEEETT------------------EEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSCEEEEET
T ss_pred EEEcCC------------------ceEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCeEEEecC
Confidence 555532 6888898887777666433221 2345567888877653
No 282
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.63 E-value=0.012 Score=58.89 Aligned_cols=241 Identities=13% Similarity=0.121 Sum_probs=119.2
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-------cCCceeeeeecC---CCEEEEEEcCCCcccCCCeE
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-------DRTAFYNSWSPT---EKHVIYTSTGPIFQSERATV 403 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-------~~~~~~~~~spd---g~~l~~~~~~~~~~~~~~~~ 403 (642)
.++|.|||+ |++... . ..|++++.++. ..+.. ......++++|| +..|+++..... .......
T Consensus 33 ~ia~~pdG~-l~V~e~-~--g~I~~~d~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~-~~~~~~~ 105 (354)
T 3a9g_A 33 SIAPLGGGR-YLVTER-P--GRLVLISPSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFA-EGGHIRN 105 (354)
T ss_dssp EEEEEETTE-EEEEET-T--TEEEEECSSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEEC-GGGCEEE
T ss_pred EEEEcCCCe-EEEEeC-C--CEEEEEeCCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccC-CCCCcce
Confidence 568899997 444432 2 68888875443 33321 235678899998 677776652100 0001124
Q ss_pred EEEEEEeecCCCCCCCCCccccceEEc----cccCCCCccCcEECCCCCeEEEEeCCC-----------CceeEEEEECC
Q 039497 404 QIARVSFQLDPSDDNNREEIPCDVKIL----TKEETGNNAFPSCSPDGKFLVFRSGRS-----------GHKNLFVLDAV 468 (642)
Q Consensus 404 ~l~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~SpDg~~l~~~~~~~-----------g~~~l~~~d~~ 468 (642)
.|+.++. ++. .. .+. ..+.+ ..........++|.|||+ |+++.... ....|++++.+
T Consensus 106 ~v~r~~~--~~~---~~-~~~-~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d 177 (354)
T 3a9g_A 106 RVIRGRL--DGS---TF-KLK-EVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEE 177 (354)
T ss_dssp EEEEEEE--CSS---SC-CEE-EEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTT
T ss_pred EEEEEEE--CCC---Cc-CcC-ccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCC
Confidence 5666665 210 00 110 11222 111111345689999995 66664321 12479999987
Q ss_pred CCcccc-----ceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce---------------EEe
Q 039497 469 NGEFNG-----DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL---------------RRI 528 (642)
Q Consensus 469 ~g~~~~-----~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~---------------~~l 528 (642)
|+.+. ..+.+.........++|+|+...|++...... ...+|.++.. ++.. ..+
T Consensus 178 -G~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~----~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~ 251 (354)
T 3a9g_A 178 -GRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPV----GHDEVNIILK-GGNYGWPLATGKAGRGEFVDPV 251 (354)
T ss_dssp -SCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSS----SCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCS
T ss_pred -CCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCC----CCcEEEEecC-CCcCCCCcccCCCCCCCCcCCE
Confidence 43100 01222222234456799994334666654432 2344555542 2110 011
Q ss_pred eecCCCCCCCcccccccceEE-------cCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC-ce---eec-c
Q 039497 529 HVAGPEGSGDVDRERINHVCF-------SADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS-GL---RRL-T 596 (642)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~-------S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~---~~l-t 596 (642)
....... ..+..+.| ..+| .|++....+ ..|+++++++. .. ..+ +
T Consensus 252 ~~~~~~~------~ap~G~~~y~g~~fp~~~G-~l~v~~~~~----------------~~v~~~~~~~~g~~~~~~~~~~ 308 (354)
T 3a9g_A 252 IDTGSET------WAPSGASFVHGDMFPGLRG-WLLIACLRG----------------SMLAAVNFGDNMEVRKISTFFK 308 (354)
T ss_dssp EECTTCC------CCEEEEEECCSSSCGGGTT-EEEEEETTT----------------TEEEEEEECGGGCEEEEEEECT
T ss_pred eecCCCC------cCCcceEEECCCCCcccCC-cEEEEEcCC----------------CEEEEEEECCCCcccceeeecc
Confidence 1000000 02334455 2456 344444322 28999988753 22 233 2
Q ss_pred CCCCCCCCcEEecCCceEEeec
Q 039497 597 WNGYENGTPAWHPGNQLDLGKL 618 (642)
Q Consensus 597 ~~~~~~~~~~~s~dg~~~~~~~ 618 (642)
........+++.|||.++++..
T Consensus 309 ~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 309 NVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp TTSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCCeeEEEECCCCcEEEEEe
Confidence 2233457889999998887764
No 283
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.51 E-value=0.0069 Score=56.18 Aligned_cols=191 Identities=11% Similarity=0.013 Sum_probs=105.8
Q ss_pred CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEE
Q 039497 373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF 452 (642)
Q Consensus 373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~ 452 (642)
.....+.|++ ..|+.+.. ..+...|..++. + +++ ....+.... ........++|+.|+.
T Consensus 21 ~ftqGL~~~~--~~LyestG------~~g~S~v~~vD~--~-----tgk----v~~~~~l~~--~~fgeGi~~~~~~ly~ 79 (243)
T 3mbr_X 21 AFTEGLFYLR--GHLYESTG------ETGRSSVRKVDL--E-----TGR----ILQRAEVPP--PYFGAGIVAWRDRLIQ 79 (243)
T ss_dssp CCEEEEEEET--TEEEEEEC------CTTSCEEEEEET--T-----TCC----EEEEEECCT--TCCEEEEEEETTEEEE
T ss_pred cccccEEEEC--CEEEEECC------CCCCceEEEEEC--C-----CCC----EEEEEeCCC--CcceeEEEEeCCEEEE
Confidence 3455677875 56666652 233334444444 2 231 333333222 2222345566888888
Q ss_pred EeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC
Q 039497 453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532 (642)
Q Consensus 453 ~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~ 532 (642)
...+++ .++++|.++.+. +..+.... ....+++||+.|+.+... ..|+++|.++.+...-..-.
T Consensus 80 ltw~~~--~v~v~D~~tl~~---~~ti~~~~---~Gwglt~dg~~L~vSdgs--------~~l~~iDp~t~~~~~~I~V~ 143 (243)
T 3mbr_X 80 LTWRNH--EGFVYDLATLTP---RARFRYPG---EGWALTSDDSHLYMSDGT--------AVIRKLDPDTLQQVGSIKVT 143 (243)
T ss_dssp EESSSS--EEEEEETTTTEE---EEEEECSS---CCCEEEECSSCEEEECSS--------SEEEEECTTTCCEEEEEECE
T ss_pred EEeeCC--EEEEEECCcCcE---EEEEeCCC---CceEEeeCCCEEEEECCC--------CeEEEEeCCCCeEEEEEEEc
Confidence 876543 899999999886 56665432 234667889888777542 24999999887654322211
Q ss_pred CCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceee-ccCC------------C
Q 039497 533 PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR-LTWN------------G 599 (642)
Q Consensus 533 ~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-lt~~------------~ 599 (642)
..+ ..-.....+.|. +|+ |+...-.. ..|.++|..++++.. +... .
T Consensus 144 ~~g---~~~~~lNeLe~~-~G~-lyanvw~s----------------~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~ 202 (243)
T 3mbr_X 144 AGG---RPLDNLNELEWV-NGE-LLANVWLT----------------SRIARIDPASGKVVAWIDLQALVPDADALTDST 202 (243)
T ss_dssp ETT---EECCCEEEEEEE-TTE-EEEEETTT----------------TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTT
T ss_pred cCC---cccccceeeEEe-CCE-EEEEECCC----------------CeEEEEECCCCCEEEEEECCcCccccccccCCc
Confidence 111 000012334443 665 55433221 289999998887542 2211 1
Q ss_pred C-CCCCcEEecCC-ceEEeecCCC
Q 039497 600 Y-ENGTPAWHPGN-QLDLGKLRLE 621 (642)
Q Consensus 600 ~-~~~~~~~s~dg-~~~~~~~~~~ 621 (642)
. ....++|+|++ ++|++...-.
T Consensus 203 ~~vlNGIA~d~~~~~lfVTGK~wp 226 (243)
T 3mbr_X 203 NDVLNGIAFDAEHDRLFVTGKRWP 226 (243)
T ss_dssp SSCEEEEEEETTTTEEEEEETTCS
T ss_pred CCceEEEEEcCCCCEEEEECCCCC
Confidence 1 12468999976 6778876644
No 284
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.49 E-value=0.0023 Score=64.11 Aligned_cols=175 Identities=13% Similarity=0.077 Sum_probs=94.0
Q ss_pred ceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC---CCCCcccceeEecC---CCEEE
Q 039497 426 DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT---DGPWIDTMPSWSPK---GDLIA 499 (642)
Q Consensus 426 ~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~---~~~~~~~~~~~spd---G~~l~ 499 (642)
+.+.+...- .....++|.|||+ |+++.. . ..|++++ +|+. ..+..+. ........++++|| +++||
T Consensus 22 ~~~~va~~l-~~P~~ia~~pdG~-l~V~e~-~--g~I~~i~--~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lY 93 (352)
T 2ism_A 22 RVEEVVGGL-EVPWALAFLPDGG-MLIAER-P--GRIRLFR--EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPYVY 93 (352)
T ss_dssp CEEEEECCC-SCEEEEEECTTSC-EEEEET-T--TEEEEEE--TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEE
T ss_pred EEEEEECCC-CCceEEEEcCCCe-EEEEeC-C--CeEEEEE--CCCc-cEeecceEeecCCCCceeEEECCCCCCCCEEE
Confidence 334444332 3556789999998 555543 3 4788888 3552 0011121 22234566799999 77777
Q ss_pred EEecCCCCCCCCceeEEEEeCCCCce---EEeee-cCC-CCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCC
Q 039497 500 FSSNRHNPDNVEAFSLYVIKPDGSGL---RRIHV-AGP-EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPN 574 (642)
Q Consensus 500 ~~~~~~~~~~~~~~~l~~~d~~~~~~---~~l~~-~~~-~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~ 574 (642)
+....... .....|++++++++.. +.+.. ... .. .......++|+||| +||++..+.+..+. + ..
T Consensus 94 v~~~~~~~--~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~----~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~--~-~d 163 (352)
T 2ism_A 94 AYRTVAEG--GLRNQVVRLRHLGERGVLDRVVLDGIPARPH----GLHSGGRIAFGPDG-MLYVTTGEVYEREL--A-QD 163 (352)
T ss_dssp EEEEECTT--SSEEEEEEEEECSSCEEEEEEEEEEECCCTT----CCCCCCCEEECTTS-CEEEECCCTTCGGG--G-GC
T ss_pred EEEecCCC--CCccEEEEEEeCCCCcCceEEEEEeCCCCCC----CCcCCceEEECCCC-CEEEEECCCCCCcc--c-cC
Confidence 77653210 1235699999876532 22221 110 00 00134689999999 57777543321100 0 00
Q ss_pred CCCCCCcEEEEEcCCC-------------ceeeccCCCCCCCCcEEec-CCceEEeec
Q 039497 575 QFQPYGDLYVVKLDGS-------------GLRRLTWNGYENGTPAWHP-GNQLDLGKL 618 (642)
Q Consensus 575 ~~~~~~~l~~~~~~~~-------------~~~~lt~~~~~~~~~~~s~-dg~~~~~~~ 618 (642)
.-.....|++++.++. ....+...-.....++|+| +|++|++..
T Consensus 164 ~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~ 221 (352)
T 2ism_A 164 LASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEH 221 (352)
T ss_dssp TTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEE
T ss_pred CCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEc
Confidence 0002358999998872 2222222223356789999 788887753
No 285
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.48 E-value=0.0077 Score=60.22 Aligned_cols=158 Identities=9% Similarity=0.097 Sum_probs=80.6
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEe------e--cCCceeeeeecC---CCEEEEEEcCCCcccCCCe
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLI------K--DRTAFYNSWSPT---EKHVIYTSTGPIFQSERAT 402 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~------~--~~~~~~~~~spd---g~~l~~~~~~~~~~~~~~~ 402 (642)
.+.|.|||++|++... ...|++++.++.....+. . ......++++|| +.+|++...... ..+...
T Consensus 22 ~i~~~pdG~~l~V~e~---~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~-~~g~~~ 97 (353)
T 2g8s_A 22 ALAFLPDNHGMLITLR---GGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVG-DDGKAG 97 (353)
T ss_dssp EEEECSTTCCEEEEET---TTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEEC-SSSCEE
T ss_pred EEEEcCCCCEEEEEeC---CceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCC-CCCCce
Confidence 5689999985444432 257888886553211111 1 234567899997 677776643100 000114
Q ss_pred EEEEEEEeecCCCCCCCCCccccceEEc-cccC-----CCCccCcEECCCCCeEEEEeCCCC-----------ceeEEEE
Q 039497 403 VQIARVSFQLDPSDDNNREEIPCDVKIL-TKEE-----TGNNAFPSCSPDGKFLVFRSGRSG-----------HKNLFVL 465 (642)
Q Consensus 403 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~-----~~~~~~~~~SpDg~~l~~~~~~~g-----------~~~l~~~ 465 (642)
..|+.++. ++ +...+. ..+.+ ...+ ......+.|.||| +|+++....+ ...|+++
T Consensus 98 ~~v~r~~~--~~----~~~~~~-~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri 169 (353)
T 2g8s_A 98 TAVGYGRL--SD----DLSKVT-DFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRL 169 (353)
T ss_dssp EEEEEEEE--CT----TSSBEE-EEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEE
T ss_pred eEEEEEEE--CC----CCCCCC-ceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEE
Confidence 45666655 21 111111 12222 1111 0123568999999 6777653322 2379999
Q ss_pred ECCCCcccc----------ceeeCCCCCCcccceeEecCCCEEEEEecC
Q 039497 466 DAVNGEFNG----------DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504 (642)
Q Consensus 466 d~~~g~~~~----------~~~~l~~~~~~~~~~~~spdG~~l~~~~~~ 504 (642)
+.++ +.+. ..+...........++|+|+...|++....
T Consensus 170 ~~dG-~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g 217 (353)
T 2g8s_A 170 TDQG-EIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHG 217 (353)
T ss_dssp ETTS-CCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEEC
T ss_pred CCCC-CCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecC
Confidence 9874 3100 012222222344567999944456666543
No 286
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.44 E-value=0.18 Score=53.86 Aligned_cols=83 Identities=11% Similarity=0.010 Sum_probs=45.8
Q ss_pred ceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCC
Q 039497 459 HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGD 538 (642)
Q Consensus 459 ~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 538 (642)
...|+.+|+.+|+. +-.+.... ..........+..|++.+.++ .|+.+|.++++..--...+...
T Consensus 443 ~g~l~a~D~~tG~~---~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg--------~l~a~D~~tG~~lw~~~~~~~~--- 507 (571)
T 2ad6_A 443 MGQIRAFDLTTGKA---KWTKWEKF-AAWGGTLYTKGGLVWYATLDG--------YLKALDNKDGKELWNFKMPSGG--- 507 (571)
T ss_dssp CEEEEEECTTTCCE---EEEEEESS-CCCSBCEEETTTEEEEECTTS--------EEEEEETTTCCEEEEEECSSCC---
T ss_pred CCeEEEEECCCCCE---EEEecCCC-CccceeEEECCCEEEEEcCCC--------eEEEEECCCCCEEEEEeCCCCc---
Confidence 35899999988885 33332221 112223344556676655443 4999999888765333322111
Q ss_pred cccccccceEEcCCCCEEEEEE
Q 039497 539 VDRERINHVCFSADGEWLLFTA 560 (642)
Q Consensus 539 ~~~~~~~~~~~S~Dg~~l~~~~ 560 (642)
....+.++.||+.++...
T Consensus 508 ----~~~p~~~~~~G~~yv~~~ 525 (571)
T 2ad6_A 508 ----IGSPMTYSFKGKQYIGSM 525 (571)
T ss_dssp ----CSCCEEEEETTEEEEEEE
T ss_pred ----EeeeEEEEECCEEEEEEE
Confidence 123455678887554443
No 287
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=97.43 E-value=0.0034 Score=63.20 Aligned_cols=170 Identities=12% Similarity=0.039 Sum_probs=102.5
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCC-----------e-eEEeecCCceeeeeecCCCEEEEEEcCCCcccCC
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK-----------R-WTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSER 400 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~-----------~-~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 400 (642)
..+++++....++.... ..+.+++++.-. . ..+.... +.++.| |++.|+... +
T Consensus 41 nlLais~~~gll~a~~~----~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~--------~ 105 (388)
T 1xip_A 41 QNLDISNSKSLFVAASG----SKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVST--------R 105 (388)
T ss_dssp BCEEEETTTTEEEEEET----TEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEE--------S
T ss_pred cEEEEcCCCCEEEEeCC----CEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEc--------C
Confidence 34578888886655432 356666543221 1 1222244 889999 999998883 5
Q ss_pred CeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC
Q 039497 401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT 480 (642)
Q Consensus 401 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~ 480 (642)
+.+++|++.. . . ....+.... ..+..+.+.+.. ++... ....|++|++++++. ..+.
T Consensus 106 ~~l~v~dv~s--l------~-----~~~~~~~~~-~~v~~i~~~~p~--~av~~---~dG~L~v~dl~~~~~----~~~~ 162 (388)
T 1xip_A 106 NALYSLDLEE--L------S-----EFRTVTSFE-KPVFQLKNVNNT--LVILN---SVNDLSALDLRTKST----KQLA 162 (388)
T ss_dssp SEEEEEESSS--T------T-----CEEEEEECS-SCEEEEEECSSE--EEEEE---TTSEEEEEETTTCCE----EEEE
T ss_pred CcEEEEEchh--h------h-----ccCccceee-cceeeEEecCCC--EEEEE---CCCCEEEEEccCCcc----cccc
Confidence 7899998855 1 1 112222222 233444555432 55554 234899999998774 4432
Q ss_pred CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce---EEeeec-------CCCCCCCcccccccceEEc
Q 039497 481 DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL---RRIHVA-------GPEGSGDVDRERINHVCFS 550 (642)
Q Consensus 481 ~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~---~~l~~~-------~~~~~~~~~~~~~~~~~~S 550 (642)
..+..++|||+| +++...++. +.+++.++++. ..|... +... .+.++.|.
T Consensus 163 ---~~Vs~v~WSpkG--~~vg~~dg~--------i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~-------~V~sI~wl 222 (388)
T 1xip_A 163 ---QNVTSFDVTNSQ--LAVLLKDRS--------FQSFAWRNGEMEKQFEFSLPSELEELPVEEY-------SPLSVTIL 222 (388)
T ss_dssp ---ESEEEEEECSSE--EEEEETTSC--------EEEEEEETTEEEEEEEECCCHHHHTSCTTTS-------EEEEEEES
T ss_pred ---CCceEEEEcCCc--eEEEEcCCc--------EEEEcCCCccccccceecCCcccccccCCCe-------eEEEEEEe
Confidence 357789999999 455555543 77778877773 334210 1122 67889999
Q ss_pred CCCCEEEEEE
Q 039497 551 ADGEWLLFTA 560 (642)
Q Consensus 551 ~Dg~~l~~~~ 560 (642)
+++++++.-.
T Consensus 223 ~~~~flv~y~ 232 (388)
T 1xip_A 223 SPQDFLAVFG 232 (388)
T ss_dssp SSSEEEEEEE
T ss_pred cCCeEEEEEc
Confidence 9999876444
No 288
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.39 E-value=0.28 Score=54.86 Aligned_cols=201 Identities=11% Similarity=0.037 Sum_probs=108.9
Q ss_pred eeEEEEECCCCCeeEEee----------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCcc
Q 039497 354 AGIKIAKSDGSKRWTLIK----------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEI 423 (642)
Q Consensus 354 ~~l~~~d~~~~~~~~l~~----------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 423 (642)
..|..++..++....... ...+.++...++|+.|++.+. ...+.+ ++. + ++
T Consensus 377 ~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~-------~~Gl~~--~d~--~-----~~--- 437 (795)
T 4a2l_A 377 GGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTH-------AGGLSI--LHR--N-----SG--- 437 (795)
T ss_dssp SCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEET-------TTEEEE--EET--T-----TC---
T ss_pred CCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeC-------cCceeE--EeC--C-----CC---
Confidence 457777777666544432 123555666677764666553 234443 333 1 12
Q ss_pred ccceEEcccc----CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC-------CCcccceeEe
Q 039497 424 PCDVKILTKE----ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG-------PWIDTMPSWS 492 (642)
Q Consensus 424 ~~~~~~l~~~----~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~-------~~~~~~~~~s 492 (642)
..+.+... ....+..+...++|+ |.+.+. . .|++++.++++. +.+... ...+..+..+
T Consensus 438 --~~~~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~-~---Gl~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~i~~d 506 (795)
T 4a2l_A 438 --QVENFNQRNSQLVNENVYAILPDGEGN-LWLGTL-S---ALVRFNPEQRSF----TTIEKEKDGTPVVSKQITTLFRD 506 (795)
T ss_dssp --CEEEECTTTSCCSCSCEEEEEECSSSC-EEEEES-S---CEEEEETTTTEE----EECCBCTTCCBCCCCCEEEEEEC
T ss_pred --cEEEeecCCCCcCCCeeEEEEECCCCC-EEEEec-C---ceeEEeCCCCeE----EEccccccccccCCceEEEEEEC
Confidence 33333221 112345556666775 444443 2 599999988774 544321 1234455677
Q ss_pred cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec-CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCC
Q 039497 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS 571 (642)
Q Consensus 493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~ 571 (642)
++|+ |++....+ |++++.++++. .+... ...+ .....+..+..+++|+ |++....
T Consensus 507 ~~g~-lWigt~~G---------l~~~~~~~~~~-~~~~~~~~~~---l~~~~i~~i~~d~~g~-lWigT~~--------- 562 (795)
T 4a2l_A 507 SHKR-LWIGGEEG---------LSVFKQEGLDI-QKASILPVSN---VTKLFTNCIYEASNGI-IWVGTRE--------- 562 (795)
T ss_dssp TTCC-EEEEESSC---------EEEEEEETTEE-EECCCSCSCG---GGGSCEEEEEECTTSC-EEEEESS---------
T ss_pred CCCC-EEEEeCCc---------eEEEeCCCCeE-EEecCCCCCC---CCCCeeEEEEECCCCC-EEEEeCC---------
Confidence 7886 55555532 99999887765 33311 0000 0001345667778887 4444432
Q ss_pred CCCCCCCCCcEEEEEcCCCceeeccCCCC----CCCCcEEecCCceEEee
Q 039497 572 WPNQFQPYGDLYVVKLDGSGLRRLTWNGY----ENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 572 ~~~~~~~~~~l~~~~~~~~~~~~lt~~~~----~~~~~~~s~dg~~~~~~ 617 (642)
.|+.++..++..+.++...+ .+.++...++|+++++.
T Consensus 563 ---------Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t 603 (795)
T 4a2l_A 563 ---------GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST 603 (795)
T ss_dssp ---------CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE
T ss_pred ---------CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc
Confidence 58888888777666654221 23345566778777665
No 289
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.38 E-value=0.25 Score=54.13 Aligned_cols=81 Identities=10% Similarity=-0.042 Sum_probs=49.2
Q ss_pred eeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce
Q 039497 513 FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL 592 (642)
Q Consensus 513 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 592 (642)
..|+.+|+.+++..--...... .....++..|..|++.+.+ +.|+.+|..++++
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~~---------~~~g~~~tagglvf~gt~d-----------------g~l~a~D~~tG~~ 508 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVTI---------FNGGTLSTAGNLVFEGSAD-----------------GRVIAYAADTGEK 508 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESSS---------CCCCEEEETTTEEEEECTT-----------------SEEEEEETTTCCE
T ss_pred eeEEEEECCCCCeEeEccCCCC---------ccCccceECCCEEEEECCC-----------------CcEEEEECCCCcc
Confidence 5699999998876533322211 1234667777766665433 2899999887764
Q ss_pred e-eccCC-CCCCCCcEEecCCceEEeecC
Q 039497 593 R-RLTWN-GYENGTPAWHPGNQLDLGKLR 619 (642)
Q Consensus 593 ~-~lt~~-~~~~~~~~~s~dg~~~~~~~~ 619 (642)
. ++... +....-+.|+.||+.+++...
T Consensus 509 lw~~~~~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 509 LWEQPAASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp EEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred ceeeeCCCCcccCceEEEECCEEEEEEEe
Confidence 3 33322 223344578899977765443
No 290
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.38 E-value=0.21 Score=53.30 Aligned_cols=82 Identities=5% Similarity=-0.073 Sum_probs=45.7
Q ss_pred ceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc
Q 039497 512 AFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG 591 (642)
Q Consensus 512 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 591 (642)
...|+.+|+.+++..--...... .....+...+..|++.+.+ ..|+.+|..+++
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~~~---------~~~~~~~t~gg~v~~g~~d-----------------g~l~a~D~~tG~ 496 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEKFA---------AWGGTLYTKGGLVWYATLD-----------------GYLKALDNKDGK 496 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESSC---------CCSBCEEETTTEEEEECTT-----------------SEEEEEETTTCC
T ss_pred CCeEEEEECCCCCEEEEecCCCC---------ccceeEEECCCEEEEEcCC-----------------CeEEEEECCCCC
Confidence 35799999988876432222211 1222334455666665433 289999988776
Q ss_pred ee-eccCCCCCC-CCcEEecCCceEEeecC
Q 039497 592 LR-RLTWNGYEN-GTPAWHPGNQLDLGKLR 619 (642)
Q Consensus 592 ~~-~lt~~~~~~-~~~~~s~dg~~~~~~~~ 619 (642)
+. ++....... ....|..||+.++....
T Consensus 497 ~lw~~~~~~~~~~~p~~~~~~G~~yv~~~~ 526 (571)
T 2ad6_A 497 ELWNFKMPSGGIGSPMTYSFKGKQYIGSMY 526 (571)
T ss_dssp EEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EEEEEeCCCCcEeeeEEEEECCEEEEEEEC
Confidence 43 333332222 23456689977765543
No 291
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.33 E-value=0.0059 Score=61.06 Aligned_cols=164 Identities=12% Similarity=0.053 Sum_probs=91.1
Q ss_pred CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC---CCCCcccceeEecC---CCEEEEEecC-CCCC
Q 039497 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT---DGPWIDTMPSWSPK---GDLIAFSSNR-HNPD 508 (642)
Q Consensus 436 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~---~~~~~~~~~~~spd---G~~l~~~~~~-~~~~ 508 (642)
.....++|.|||+ |+++.. . ..|++++.+ |+. .+..+. ........++++|| +.+||+.... ...
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~-~--g~I~~~d~~-G~~--~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~- 100 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTER-P--GRLVLISPS-GKK--LVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEG- 100 (354)
T ss_dssp SCEEEEEEEETTE-EEEEET-T--TEEEEECSS-CEE--EEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGG-
T ss_pred CCCeEEEEcCCCe-EEEEeC-C--CEEEEEeCC-Cce--EeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCC-
Confidence 4556789999997 555543 3 478888743 541 022221 22234566799998 6677776542 100
Q ss_pred CCCceeEEEEeCCCC--c---eEEeee---cCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCC
Q 039497 509 NVEAFSLYVIKPDGS--G---LRRIHV---AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYG 580 (642)
Q Consensus 509 ~~~~~~l~~~d~~~~--~---~~~l~~---~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 580 (642)
......|++++++++ . .+.+.. ..... ....+.|.|||+ ||++..+.+.... + ...-....
T Consensus 101 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h-------~~~~l~~~pDG~-Lyvt~G~~~~~~~--~-~d~~~~~G 169 (354)
T 3a9g_A 101 GHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIH-------NGGRIRFGPDGM-LYITTGDAADPRL--A-QDLSSLAG 169 (354)
T ss_dssp GCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSC-------CCCCEEECTTSC-EEEECCCTTCGGG--G-TCTTCCSS
T ss_pred CCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCc-------CCceEEECCCCc-EEEEECCCCCCcc--c-cCCCCCCe
Confidence 002256999998765 1 222221 11111 236799999996 7776543221100 0 00001235
Q ss_pred cEEEEEcCCC--------ceeeccCCCCCCCCcEEec-CCceEEeec
Q 039497 581 DLYVVKLDGS--------GLRRLTWNGYENGTPAWHP-GNQLDLGKL 618 (642)
Q Consensus 581 ~l~~~~~~~~--------~~~~lt~~~~~~~~~~~s~-dg~~~~~~~ 618 (642)
.|++++.++. ....+...-.....++|+| +|++|++..
T Consensus 170 ~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 170 KILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEH 216 (354)
T ss_dssp EEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEEC
T ss_pred EEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEec
Confidence 8999998875 2233333334456889999 788887753
No 292
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.31 E-value=0.004 Score=62.29 Aligned_cols=173 Identities=13% Similarity=0.060 Sum_probs=90.9
Q ss_pred CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC----CCCCCcccceeEecC---CCEEEEEecCCCCC
Q 039497 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL----TDGPWIDTMPSWSPK---GDLIAFSSNRHNPD 508 (642)
Q Consensus 436 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l----~~~~~~~~~~~~spd---G~~l~~~~~~~~~~ 508 (642)
.....++|.|||++|+++.. . ..|++++.+ |+....+..+ .........++++|| +.+||+........
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~-~--G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~ 93 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLR-G--GELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD 93 (353)
T ss_dssp SSEEEEEECSTTCCEEEEET-T--TEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred CCcEEEEEcCCCCEEEEEeC-C--ceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence 35567899999986555543 3 379999865 4420001111 111223356799997 66777765432100
Q ss_pred CCCceeEEEEeCCCC-----ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEE
Q 039497 509 NVEAFSLYVIKPDGS-----GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLY 583 (642)
Q Consensus 509 ~~~~~~l~~~d~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 583 (642)
......|++++++.+ ..+.+....... .........+.|+||| +||++..+.+..+ .+. ..-.....|+
T Consensus 94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~--~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~--~~q-~~~~~~g~I~ 167 (353)
T 2g8s_A 94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKL--STGNHFGGRLVFDGKG-YLFIALGENNQRP--TAQ-DLDKLQGKLV 167 (353)
T ss_dssp SCEEEEEEEEEECTTSSBEEEEEEEEECSSCC--BSSSCCCCCEEECSSS-EEEEEECCTTCGG--GGG-CTTSCTTEEE
T ss_pred CCceeEEEEEEECCCCCCCCceEEEEEECCCC--CCCcccCccEEECCCC-cEEEEECCCCCCC--ccC-CCCCCCeEEE
Confidence 001457888888654 222232211000 0000124679999999 6777764432100 000 0000235899
Q ss_pred EEEcCCCc-------------eeeccCCCCCCCCcEEec-CCceEEeec
Q 039497 584 VVKLDGSG-------------LRRLTWNGYENGTPAWHP-GNQLDLGKL 618 (642)
Q Consensus 584 ~~~~~~~~-------------~~~lt~~~~~~~~~~~s~-dg~~~~~~~ 618 (642)
+++.++.. ...+...-.....++|+| +|++|++..
T Consensus 168 ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~ 216 (353)
T 2g8s_A 168 RLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEH 216 (353)
T ss_dssp EEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEE
T ss_pred EECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEec
Confidence 99988752 222222223346789999 788887654
No 293
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.28 E-value=0.062 Score=58.72 Aligned_cols=139 Identities=12% Similarity=0.069 Sum_probs=79.9
Q ss_pred ccCCceEecccCCCccCCceeCC-CCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeec---CCCc---ceEe
Q 039497 127 LKASKFTRLTPYGVVDYSPSVSY-SGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCE---RGGW---PTWS 199 (642)
Q Consensus 127 ~~~~~~~~lt~~~~~~~~~~~SP-DG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~---~~~~---~~ws 199 (642)
+..++...+...+....+.++.| +|+.+++........... ......++++++.+++.+++... ...+ .++.
T Consensus 173 p~~~~W~~~~~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~-~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~ 251 (656)
T 1k3i_A 173 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGS-PGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMD 251 (656)
T ss_dssp TTSCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSC-CCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEEC
T ss_pred CCCCeeeeeccCCCCceeEEEEecCCEEEEEecccccccccC-CCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCC
Confidence 34555555554444445677888 888888876543211111 11235789999999987766542 2222 3667
Q ss_pred eCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCC--CccccceeecCCcEEEEEEe-ccCCceeeEEEEEe
Q 039497 200 GDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPG--VHCFTPAAFHDGKRLAVATR-RKNRNFRHIEIYDL 276 (642)
Q Consensus 200 pdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~SpdG~~l~~~~~-~~~~~~~~i~~~d~ 276 (642)
.||++|+....... .++.+|+.+. .-..+.... ......++.+||+.+++... ..+.....+++||.
T Consensus 252 ~~g~lyv~GG~~~~--~v~~yd~~t~--------~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 252 GNGQIVVTGGNDAK--KTSLYDSSSD--------SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp TTSCEEEECSSSTT--CEEEEEGGGT--------EEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred CCCCEEEeCCCCCC--ceEEecCcCC--------ceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCC
Confidence 89998888722222 6888888776 444443322 11222344579987666431 22223456777776
No 294
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.23 E-value=0.014 Score=57.35 Aligned_cols=136 Identities=22% Similarity=0.328 Sum_probs=80.3
Q ss_pred CccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEE
Q 039497 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY 516 (642)
Q Consensus 437 ~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~ 516 (642)
....+...++|+ |++.+. ...|+.+|.+ |+. .............+...++|+ |++.. .. |+
T Consensus 138 ~~~~~~~~~~g~-l~vgt~---~~~l~~~d~~-g~~---~~~~~~~~~~~~~~~~d~~g~-l~v~t--~~--------l~ 198 (330)
T 3hxj_A 138 IYATPIVSEDGT-IYVGSN---DNYLYAINPD-GTE---KWRFKTNDAITSAASIGKDGT-IYFGS--DK--------VY 198 (330)
T ss_dssp CCSCCEECTTSC-EEEECT---TSEEEEECTT-SCE---EEEEECSSCCCSCCEECTTCC-EEEES--SS--------EE
T ss_pred eeeeeEEcCCCE-EEEEcC---CCEEEEECCC-CCE---eEEEecCCCceeeeEEcCCCE-EEEEe--CE--------EE
Confidence 455677777876 444442 2479999998 764 333333333455677778887 55555 32 99
Q ss_pred EEeCCCCceE-EeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeec
Q 039497 517 VIKPDGSGLR-RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL 595 (642)
Q Consensus 517 ~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 595 (642)
.+|. +++.. .... . .. .+..+..+++|. |++.+..+ .|+.++.++......
T Consensus 199 ~~d~-~g~~~~~~~~-~-~~-------~~~~~~~~~~g~-l~v~t~~~-----------------gl~~~~~~g~~~~~~ 250 (330)
T 3hxj_A 199 AINP-DGTEKWNFYA-G-YW-------TVTRPAISEDGT-IYVTSLDG-----------------HLYAINPDGTEKWRF 250 (330)
T ss_dssp EECT-TSCEEEEECC-S-SC-------CCSCCEECTTSC-EEEEETTT-----------------EEEEECTTSCEEEEE
T ss_pred EECC-CCcEEEEEcc-C-Cc-------ceeceEECCCCe-EEEEcCCC-----------------eEEEECCCCCEeEEe
Confidence 9994 44332 2221 1 12 356778888875 55544322 688887666665555
Q ss_pred cCCCCCCCCcEEecCCceEEeecC
Q 039497 596 TWNGYENGTPAWHPGNQLDLGKLR 619 (642)
Q Consensus 596 t~~~~~~~~~~~s~dg~~~~~~~~ 619 (642)
.........+...++|.++++..+
T Consensus 251 ~~~~~~~~~~~~~~~g~l~v~t~~ 274 (330)
T 3hxj_A 251 KTGKRIESSPVIGNTDTIYFGSYD 274 (330)
T ss_dssp ECSSCCCSCCEECTTSCEEEECTT
T ss_pred eCCCCccccceEcCCCeEEEecCC
Confidence 544444456677777777766543
No 295
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.13 E-value=0.0059 Score=63.25 Aligned_cols=181 Identities=13% Similarity=0.107 Sum_probs=97.3
Q ss_pred ceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC------CCCcccceeEecC---CC
Q 039497 426 DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD------GPWIDTMPSWSPK---GD 496 (642)
Q Consensus 426 ~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~------~~~~~~~~~~spd---G~ 496 (642)
+.+.+...- .....++|.|||+.+ ++... + ..|++++..+|+. ..+..+.. .......++|+|| +.
T Consensus 18 ~~~~~a~~l-~~P~~~a~~pdG~l~-V~e~~-g-g~I~~~~~~~g~~-~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g 92 (454)
T 1cru_A 18 DKKVILSNL-NKPHALLWGPDNQIW-LTERA-T-GKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNP 92 (454)
T ss_dssp CEEEEECCC-SSEEEEEECTTSCEE-EEETT-T-CEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTTTTTSC
T ss_pred EEEEEECCC-CCceEEEEcCCCcEE-EEEcC-C-CEEEEEECCCCcE-eEEecCCccccccCCCCceeEEEECCCcCcCC
Confidence 444444433 456678999999844 44332 2 3699998766653 11122222 1223346899997 77
Q ss_pred EEEEEecCCC----C-CCCCceeEEEEeCCCC-----ceEEeee-cCCCCCCCcccccccceEEcCCCCEEEEEEecCCc
Q 039497 497 LIAFSSNRHN----P-DNVEAFSLYVIKPDGS-----GLRRIHV-AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV 565 (642)
Q Consensus 497 ~l~~~~~~~~----~-~~~~~~~l~~~d~~~~-----~~~~l~~-~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~ 565 (642)
+||+...... . .......|++++++.+ ..+.|.. ..... ......++|.|||+ ||++..+.+.
T Consensus 93 ~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~-----~H~~~~l~f~pDG~-Lyv~~Gd~~~ 166 (454)
T 1cru_A 93 YIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSK-----DHQSGRLVIGPDQK-IYYTIGDQGR 166 (454)
T ss_dssp EEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCS-----SCCEEEEEECTTSC-EEEEECCTTT
T ss_pred EEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCC-----CCCCCeEeECCCCe-EEEEECCCCC
Confidence 7877765310 0 0001467888887543 1222322 11110 01346899999996 6666544321
Q ss_pred c-----cCCC-----C------CCCCCCCCCcEEEEEcCCC-----------ceeeccCCCCCCCCcEEecCCceEEee
Q 039497 566 M-----AEPV-----S------WPNQFQPYGDLYVVKLDGS-----------GLRRLTWNGYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 566 ~-----~~~~-----~------~~~~~~~~~~l~~~~~~~~-----------~~~~lt~~~~~~~~~~~s~dg~~~~~~ 617 (642)
. +++. + -...-...+.|++++.++. ....+...-.....++|.|+|+++++.
T Consensus 167 ~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~L~~~d 245 (454)
T 1cru_A 167 NQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSE 245 (454)
T ss_dssp TSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSCEEEEE
T ss_pred CCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCCEEEEe
Confidence 1 0000 0 0000012468999999886 223333333445678999999888775
No 296
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.11 E-value=0.27 Score=49.12 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=41.9
Q ss_pred CCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC-CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc
Q 039497 446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG-PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG 524 (642)
Q Consensus 446 Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~-~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~ 524 (642)
++..|++.... ..|+.+|..+|+. +...... ......+... +..|++....+ .|+.+|.++++
T Consensus 276 ~~~~l~~~~~~---g~l~~~d~~tG~~---~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g--------~l~~~d~~tG~ 339 (376)
T 3q7m_A 276 DGNRIYLVDQN---DRVMALTIDGGVT---LWTQSDLLHRLLTSPVLY--NGNLVVGDSEG--------YLHWINVEDGR 339 (376)
T ss_dssp ETTEEEEEETT---CCEEEEETTTCCE---EEEECTTTTSCCCCCEEE--TTEEEEECTTS--------EEEEEETTTCC
T ss_pred ECCEEEEEcCC---CeEEEEECCCCcE---EEeecccCCCcccCCEEE--CCEEEEEeCCC--------eEEEEECCCCc
Confidence 45677776642 3799999999985 2222211 1223344443 45677776554 39999998887
Q ss_pred eEEee
Q 039497 525 LRRIH 529 (642)
Q Consensus 525 ~~~l~ 529 (642)
..-..
T Consensus 340 ~~~~~ 344 (376)
T 3q7m_A 340 FVAQQ 344 (376)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 65433
No 297
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=96.88 E-value=0.076 Score=58.06 Aligned_cols=215 Identities=9% Similarity=0.012 Sum_probs=111.1
Q ss_pred EEcCCCCEEEEEec--CCCceeEEEEECCCCCeeEEeec-C---------CceeeeeecCCCEEEEEEc-CCC-cccCCC
Q 039497 336 SFSPDGGLIVFNHD--FELNAGIKIAKSDGSKRWTLIKD-R---------TAFYNSWSPTEKHVIYTST-GPI-FQSERA 401 (642)
Q Consensus 336 ~~spdg~~l~~~~~--~~~~~~l~~~d~~~~~~~~l~~~-~---------~~~~~~~spdg~~l~~~~~-~~~-~~~~~~ 401 (642)
.++|||+++++.-. +.....+.++|+++++...-... . ....+.|. |++.++|... ++. ......
T Consensus 136 ~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~~~~~ 214 (711)
T 4hvt_A 136 NCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEITSSLY 214 (711)
T ss_dssp ECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBCTTSS
T ss_pred ecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCcCcCCC
Confidence 37999999999443 34456788899998864321101 0 01344897 6666766542 221 111112
Q ss_pred eEEEEEEEeecCCCCCCCCCccccceEEccccC-CCCccCcEECCCCCe----EEEE-eCCCCceeEEEEECCC--Cccc
Q 039497 402 TVQIARVSFQLDPSDDNNREEIPCDVKILTKEE-TGNNAFPSCSPDGKF----LVFR-SGRSGHKNLFVLDAVN--GEFN 473 (642)
Q Consensus 402 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~SpDg~~----l~~~-~~~~g~~~l~~~d~~~--g~~~ 473 (642)
...+|.... |. ... ....+.... ......+..++|+++ ++.. +...-..++|+.+.+. ++
T Consensus 215 ~~~v~~~~~--------Gt-~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-- 282 (711)
T 4hvt_A 215 PNSLYIWKR--------GE-SIE-KAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-- 282 (711)
T ss_dssp BCEEEEEET--------TS-CGG-GCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE--
T ss_pred CCEEEEEEC--------CC-ChH-HCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc--
Confidence 234444444 11 111 223333222 112234567888885 3332 2222346899998764 44
Q ss_pred cceeeCCCCCCcccceeEecCCCEEEEEecCCC--CCCCCceeEEEEeCCCC--------ceEEeeecCCCCCCCccccc
Q 039497 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHN--PDNVEAFSLYVIKPDGS--------GLRRIHVAGPEGSGDVDRER 543 (642)
Q Consensus 474 ~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~--~~~~~~~~l~~~d~~~~--------~~~~l~~~~~~~~~~~~~~~ 543 (642)
+..|..... ..+..+.+|+.+++...+-. ........|+.+++++. +.+.+....... .
T Consensus 283 --~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 351 (711)
T 4hvt_A 283 --LQKINMPSD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANE-------V 351 (711)
T ss_dssp --EEECCSCTT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTE-------E
T ss_pred --ceEeecCCc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCC-------e
Confidence 355543321 23456667754444432200 00012445999998763 344433323222 4
Q ss_pred ccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497 544 INHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590 (642)
Q Consensus 544 ~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 590 (642)
+..+.|..| .|+++..+.+.. .|+++++.++
T Consensus 352 l~~~~~~~~--~l~~~~~~~~~~--------------~l~~~~~~~g 382 (711)
T 4hvt_A 352 FNFISTTKD--RVFLATYDNVVA--------------KVVTFTLENE 382 (711)
T ss_dssp EEEEEECSS--CEEEEEEETTEE--------------EEEEECEETT
T ss_pred EEEEEEECC--EEEEEEEECCEE--------------EEEEEECCCC
Confidence 456777765 577776666543 8999988665
No 298
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.87 E-value=0.38 Score=46.99 Aligned_cols=142 Identities=13% Similarity=0.174 Sum_probs=82.6
Q ss_pred ceeEEEEECCCCCeeEEeecCCceeee----eecCCCE--EEEEEcCCCcccC--CCeEEEEEEEeecCCCCCCCCCccc
Q 039497 353 NAGIKIAKSDGSKRWTLIKDRTAFYNS----WSPTEKH--VIYTSTGPIFQSE--RATVQIARVSFQLDPSDDNNREEIP 424 (642)
Q Consensus 353 ~~~l~~~d~~~~~~~~l~~~~~~~~~~----~spdg~~--l~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~ 424 (642)
...|+++|+++.....+.. +....+. |.-.|+. |++++. .. ...+.++.++. + .+
T Consensus 49 ~~gL~Vydl~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~-----R~~~~n~l~vf~iDp--~-----~~---- 111 (355)
T 3amr_A 49 KSGLVVYSLDGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASN-----RSEGKNTIEIYAIDG--K-----NG---- 111 (355)
T ss_dssp TTEEEEEETTSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEE-----CSTTCCEEEEEEECT--T-----TC----
T ss_pred CCCEEEEcCCCcEEEEccC-CCcccEEEecccccCCceEeEEEEeC-----CCCCCCeEEEEEECC--C-----CC----
Confidence 4689999997766555532 3344433 3334554 667775 34 57889998864 2 22
Q ss_pred cceEEcccc-----CC-CCccCcEE--CCC-CCeEEEEeCCCCceeEEEEEC-CCCccc-cceeeCCCCCCcccceeEec
Q 039497 425 CDVKILTKE-----ET-GNNAFPSC--SPD-GKFLVFRSGRSGHKNLFVLDA-VNGEFN-GDIRQLTDGPWIDTMPSWSP 493 (642)
Q Consensus 425 ~~~~~l~~~-----~~-~~~~~~~~--SpD-g~~l~~~~~~~g~~~l~~~d~-~~g~~~-~~~~~l~~~~~~~~~~~~sp 493 (642)
....+... .. .....+.+ +|+ |+..+|.+.+++....|.+.. ..|+.. +.++.+.-. .....++..+
T Consensus 112 -~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd 189 (355)
T 3amr_A 112 -TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADD 189 (355)
T ss_dssp -CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEET
T ss_pred -ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcC
Confidence 34444221 11 33445666 774 666788888777544443322 233210 113444433 3456788998
Q ss_pred CCCEEEEEecCCCCCCCCceeEEEEeCC
Q 039497 494 KGDLIAFSSNRHNPDNVEAFSLYVIKPD 521 (642)
Q Consensus 494 dG~~l~~~~~~~~~~~~~~~~l~~~d~~ 521 (642)
...+||+..... .||+++.+
T Consensus 190 ~~g~Lyv~eEd~--------GIw~~da~ 209 (355)
T 3amr_A 190 EYGRLYIAEEDE--------AIWKFSAE 209 (355)
T ss_dssp TTTEEEEEETTT--------EEEEEECS
T ss_pred CCCeEEEecccc--------eEEEEeCC
Confidence 888888887654 39999965
No 299
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.85 E-value=0.063 Score=53.12 Aligned_cols=148 Identities=12% Similarity=0.049 Sum_probs=82.5
Q ss_pred cEECC--CCC-eEEEEeCCC--CceeEEEEECCCCccccceeeCCCCC-CcccceeEecCCCEEEEEecCC-CC------
Q 039497 441 PSCSP--DGK-FLVFRSGRS--GHKNLFVLDAVNGEFNGDIRQLTDGP-WIDTMPSWSPKGDLIAFSSNRH-NP------ 507 (642)
Q Consensus 441 ~~~Sp--Dg~-~l~~~~~~~--g~~~l~~~d~~~g~~~~~~~~l~~~~-~~~~~~~~spdG~~l~~~~~~~-~~------ 507 (642)
+.+.+ ||+ +|++..... ...+|+.++.+++.. ..+..+.... ...+.....++|+ ++++...- +.
T Consensus 117 i~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~-~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~ 194 (355)
T 3sre_A 117 ISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSL-LHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSW 194 (355)
T ss_dssp EEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEE-EEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHH
T ss_pred eEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEE-EEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccc
Confidence 44444 565 455554442 334688888775542 0111222211 2335668899997 55554310 00
Q ss_pred ---CCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEE
Q 039497 508 ---DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYV 584 (642)
Q Consensus 508 ---~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 584 (642)
.......||+++.. +.+.+.. +.. ..+.++|||||++||++..... .||+
T Consensus 195 e~~~~~~~g~vyr~d~~--~~~~~~~-~l~--------~pNGia~spDg~~lYvadt~~~----------------~I~~ 247 (355)
T 3sre_A 195 EMHLGLAWSFVTYYSPN--DVRVVAE-GFD--------FANGINISPDGKYVYIAELLAH----------------KIHV 247 (355)
T ss_dssp HHHTTCCCEEEEEECTT--CCEEEEE-EES--------SEEEEEECTTSSEEEEEEGGGT----------------EEEE
T ss_pred hhhccCCccEEEEEECC--eEEEeec-CCc--------ccCcceECCCCCEEEEEeCCCC----------------eEEE
Confidence 00124579999873 4554433 211 3467999999999999876542 8999
Q ss_pred EEcCC-Ccee---eccCCCCCCCCcEEec-CCceEEeec
Q 039497 585 VKLDG-SGLR---RLTWNGYENGTPAWHP-GNQLDLGKL 618 (642)
Q Consensus 585 ~~~~~-~~~~---~lt~~~~~~~~~~~s~-dg~~~~~~~ 618 (642)
++++. +.+. .+ ...+....++..+ +|.++++..
T Consensus 248 ~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 248 YEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp EEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEE
T ss_pred EEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEec
Confidence 98863 3322 22 2233345678888 588887653
No 300
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.84 E-value=0.21 Score=48.39 Aligned_cols=236 Identities=7% Similarity=-0.070 Sum_probs=112.9
Q ss_pred CEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCC
Q 039497 342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNN 419 (642)
Q Consensus 342 ~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 419 (642)
+.|++.........++++|....+...+.. ..........-+++ |++..... ......++.++. . .
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~-lyv~GG~~----~~~~~~~~~~d~--~-----~ 79 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNV-VYILGGSQ----LFPIKRMDCYNV--V-----K 79 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTE-EEEECCBS----SSBCCEEEEEET--T-----T
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCE-EEEEeCCC----CCCcceEEEEeC--C-----C
Confidence 445554433336789999999887666644 11222222233444 44333111 111223444444 1 1
Q ss_pred CCccccceEEccccCCCCccCcEECCCCCeEEEEeCC---CCceeEEEEECCCCccccceeeCCCCCCcc-cceeEecCC
Q 039497 420 REEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR---SGHKNLFVLDAVNGEFNGDIRQLTDGPWID-TMPSWSPKG 495 (642)
Q Consensus 420 ~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~---~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~-~~~~~spdG 495 (642)
+ ....+...+.....+....-+++.+++.... .....++++|+.+.+. +.+...+... .+....-++
T Consensus 80 ~-----~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~~~ 150 (306)
T 3ii7_A 80 D-----SWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESW----HTKPSMLTQRCSHGMVEANG 150 (306)
T ss_dssp T-----EEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEE----EEECCCSSCCBSCEEEEETT
T ss_pred C-----eEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCce----EeCCCCcCCcceeEEEEECC
Confidence 2 4455543331233333333455544443322 1134799999998875 5554433221 122223356
Q ss_pred CEEEEEecCCCCC-CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCC
Q 039497 496 DLIAFSSNRHNPD-NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPN 574 (642)
Q Consensus 496 ~~l~~~~~~~~~~-~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~ 574 (642)
+.+++........ ......++++|+.+.+.+.+...... ........-+++.+++.......
T Consensus 151 ~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--------r~~~~~~~~~~~i~v~GG~~~~~--------- 213 (306)
T 3ii7_A 151 LIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEA--------RKNHGLVFVKDKIFAVGGQNGLG--------- 213 (306)
T ss_dssp EEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSC--------CBSCEEEEETTEEEEECCEETTE---------
T ss_pred EEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccch--------hhcceEEEECCEEEEEeCCCCCC---------
Confidence 5444443322100 00156799999999988877532211 12222233366544443322211
Q ss_pred CCCCCCcEEEEEcCCCceeeccCCCCCC-CCcEEecCCceEEeec
Q 039497 575 QFQPYGDLYVVKLDGSGLRRLTWNGYEN-GTPAWHPGNQLDLGKL 618 (642)
Q Consensus 575 ~~~~~~~l~~~~~~~~~~~~lt~~~~~~-~~~~~s~dg~~~~~~~ 618 (642)
....++.+|+....-+.+......- ...+..-++++++...
T Consensus 214 ---~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG 255 (306)
T 3ii7_A 214 ---GLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAG 255 (306)
T ss_dssp ---EBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEEEC
T ss_pred ---CCceEEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEEeC
Confidence 1238999999988777665432111 1122223666665443
No 301
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=96.64 E-value=0.0031 Score=63.68 Aligned_cols=144 Identities=15% Similarity=0.140 Sum_probs=58.0
Q ss_pred CCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCC
Q 039497 340 DGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNN 419 (642)
Q Consensus 340 dg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 419 (642)
++..|++... ...|+.+|.++++.........+....+.++++.++..+ .++.+..++... +
T Consensus 8 ~~~~v~~gs~---dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~~s-------~dg~l~a~d~~t--------G 69 (369)
T 2hz6_A 8 PETLLFVSTL---DGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDP-------NDGSLYTLGSKN--------N 69 (369)
T ss_dssp CTTEEEEEET---TSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEECT-------TTCCEEEC-------------
T ss_pred eCCEEEEEcC---CCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEEeC-------CCCEEEEEECCC--------C
Confidence 4555665543 357888998877754333323333344455665444322 256666666644 2
Q ss_pred CCccccceEEccccCC-CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEE
Q 039497 420 REEIPCDVKILTKEET-GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498 (642)
Q Consensus 420 ~~~~~~~~~~l~~~~~-~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l 498 (642)
. .......... .....+.++.++ .|++.+ ....|+.+|..+|+. +..+.... ...++|++..|
T Consensus 70 ~-----~~w~~~~~~~~~~~~sp~~~~~~-~v~~g~---~dg~v~a~D~~tG~~---~w~~~~~~----~~~~~p~~~~v 133 (369)
T 2hz6_A 70 E-----GLTKLPFTIPELVQASPCRSSDG-ILYMGK---KQDIWYVIDLLTGEK---QQTLSSAF----ADSLSPSTSLL 133 (369)
T ss_dssp C-----CSEECSCCHHHHHTTCSCC------CCCCE---EEEEEEEECCC-----------------------------E
T ss_pred c-----eeeeeeccCccccccCceEecCC-EEEEEe---CCCEEEEEECCCCcE---EEEecCCC----cccccccCCEE
Confidence 2 2222221110 011233333343 444433 234799999999985 33333221 23556788888
Q ss_pred EEEecCCCCCCCCceeEEEEeCCCCce
Q 039497 499 AFSSNRHNPDNVEAFSLYVIKPDGSGL 525 (642)
Q Consensus 499 ~~~~~~~~~~~~~~~~l~~~d~~~~~~ 525 (642)
++.+.++ .|+.+|.++++.
T Consensus 134 ~~~~~dg--------~v~a~d~~tG~~ 152 (369)
T 2hz6_A 134 YLGRTEY--------TITMYDTKTREL 152 (369)
T ss_dssp EEEEEEE--------EEECCCSSSSSC
T ss_pred EEEecCC--------EEEEEECCCCCE
Confidence 8776543 399999987764
No 302
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.57 E-value=0.16 Score=49.20 Aligned_cols=162 Identities=10% Similarity=-0.047 Sum_probs=93.3
Q ss_pred CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC----C----cccceeE---ecCCCEEEEEecC
Q 039497 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP----W----IDTMPSW---SPKGDLIAFSSNR 504 (642)
Q Consensus 436 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~----~----~~~~~~~---spdG~~l~~~~~~ 504 (642)
.....+.|.+....+++.+...+ .|+.++..++.. ..+.-.. + ....+.| .|+|+.+++....
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g--~V~~~~~~~~~~----~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKG--RIEVYNPKTQSH----FNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTT--EEEEECTTTCCE----EEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred cCCcCccCcCCCCEEEEEeccCC--EEEEEcCCCCeE----EEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 45667899988888888886544 899999986653 3321111 1 2356788 6887766544321
Q ss_pred CC-----CCCCCceeEEEEeCC---CCceEEeeecC-CCCC---C-CcccccccceEEcCCCCEEEEEEecCCcccCCCC
Q 039497 505 HN-----PDNVEAFSLYVIKPD---GSGLRRIHVAG-PEGS---G-DVDRERINHVCFSADGEWLLFTANLGAVMAEPVS 571 (642)
Q Consensus 505 ~~-----~~~~~~~~l~~~d~~---~~~~~~l~~~~-~~~~---~-~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~ 571 (642)
.. ....+...|.++|++ +++........ .... . ......+.+++..++|+. |++...+
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gna-YVt~s~~-------- 157 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNS-YVAFALG-------- 157 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCE-EEEEEES--------
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCE-EEeCCCC--------
Confidence 00 001235679999999 55543322210 0000 0 000013568999999984 4443332
Q ss_pred CCCCCCCCCcEEEEEcCCCceeecc-CC-----CCCCCCcEEecCCceEEeecC
Q 039497 572 WPNQFQPYGDLYVVKLDGSGLRRLT-WN-----GYENGTPAWHPGNQLDLGKLR 619 (642)
Q Consensus 572 ~~~~~~~~~~l~~~~~~~~~~~~lt-~~-----~~~~~~~~~s~dg~~~~~~~~ 619 (642)
+..||+++.++.....+. .. ......++++|||..|+...+
T Consensus 158 -------~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~ 204 (334)
T 2p9w_A 158 -------MPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG 204 (334)
T ss_dssp -------SCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS
T ss_pred -------CCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC
Confidence 128999999987544322 11 122457899999987766655
No 303
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.49 E-value=1.5 Score=48.76 Aligned_cols=138 Identities=10% Similarity=0.052 Sum_probs=80.4
Q ss_pred CccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC------CCcccceeEecCCCEEEEEecCCCCCCC
Q 039497 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG------PWIDTMPSWSPKGDLIAFSSNRHNPDNV 510 (642)
Q Consensus 437 ~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~------~~~~~~~~~spdG~~l~~~~~~~~~~~~ 510 (642)
.+..+...++|+ |.+... ..|++++..+++. +.+... ...+..+...++|+ |++......
T Consensus 451 ~v~~i~~d~~g~-lwigt~----~Gl~~~~~~~~~~----~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~~~G---- 516 (781)
T 3v9f_A 451 DVRVFYEDKNKK-IWIGTH----AGVFVIDLASKKV----IHHYDTSNSQLLENFVRSIAQDSEGR-FWIGTFGGG---- 516 (781)
T ss_dssp CEEEEEECTTSE-EEEEET----TEEEEEESSSSSC----CEEECTTTSSCSCSCEEEEEECTTCC-EEEEESSSC----
T ss_pred eEEEEEECCCCC-EEEEEC----CceEEEeCCCCeE----EecccCcccccccceeEEEEEcCCCC-EEEEEcCCC----
Confidence 444555666664 555543 2599999987764 333211 12345556777886 566654332
Q ss_pred CceeEEEEeCCCCceEEeeecC-CCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcE-EEEEcC
Q 039497 511 EAFSLYVIKPDGSGLRRIHVAG-PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDL-YVVKLD 588 (642)
Q Consensus 511 ~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~ 588 (642)
|++++.++++.+.+.... ... ..+..+...++|+ |++.... .| +.++..
T Consensus 517 ----l~~~~~~~~~~~~~~~~~~l~~------~~i~~i~~d~~g~-lWi~T~~------------------Glv~~~d~~ 567 (781)
T 3v9f_A 517 ----VGIYTPDMQLVRKFNQYEGFCS------NTINQIYRSSKGQ-MWLATGE------------------GLVCFPSAR 567 (781)
T ss_dssp ----EEEECTTCCEEEEECTTTTCSC------SCEEEEEECTTSC-EEEEETT------------------EEEEESCTT
T ss_pred ----EEEEeCCCCeEEEccCCCCCCC------CeeEEEEECCCCC-EEEEECC------------------CceEEECCC
Confidence 999999887776654311 111 1345666777887 4444432 45 777777
Q ss_pred CCceeeccCCC----CCCCCcEEecCCceEEee
Q 039497 589 GSGLRRLTWNG----YENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 589 ~~~~~~lt~~~----~~~~~~~~s~dg~~~~~~ 617 (642)
++..+.++... ..+.++...++|+++++.
T Consensus 568 ~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t 600 (781)
T 3v9f_A 568 NFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST 600 (781)
T ss_dssp TCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC
T ss_pred CCcEEEccccCCCCCceEEEEEECCCCCEEEEc
Confidence 76666555322 123456666777777664
No 304
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.46 E-value=1.2 Score=47.47 Aligned_cols=83 Identities=11% Similarity=0.095 Sum_probs=45.5
Q ss_pred ceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCC
Q 039497 459 HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGD 538 (642)
Q Consensus 459 ~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 538 (642)
...|+.+|+.+|+. +-..... .....-..+..|..|++.+.++ .|+.+|.++++..--.......
T Consensus 452 ~G~l~A~D~~tG~~---~W~~~~~-~~~~~g~~~tagg~vf~gt~dg--------~l~A~D~~tG~~lW~~~l~~g~--- 516 (599)
T 1w6s_A 452 LGQIKAYNAITGDY---KWEKMER-FAVWGGTMATAGDLVFYGTLDG--------YLKARDSDTGDLLWKFKIPSGA--- 516 (599)
T ss_dssp CEEEEEECTTTCCE---EEEEEES-SCCCSBCEEETTTEEEEECTTS--------EEEEEETTTCCEEEEEECSSCC---
T ss_pred cCeEEEEECCCCCE---EeEecCC-CCccCcceEecCCEEEEECCCC--------eEEEEECCCCCEEEEeeCCCCc---
Confidence 35789999999885 2222211 1111122333566666654443 3999999988764322222211
Q ss_pred cccccccceEEcCCCCEEEEEE
Q 039497 539 VDRERINHVCFSADGEWLLFTA 560 (642)
Q Consensus 539 ~~~~~~~~~~~S~Dg~~l~~~~ 560 (642)
....+.+..||+..+...
T Consensus 517 ----~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 517 ----IGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp ----CSCCEEEEETTEEEEEEE
T ss_pred ----EeccEEEEeCCEEEEEEE
Confidence 224467778997544443
No 305
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.44 E-value=0.28 Score=53.39 Aligned_cols=119 Identities=12% Similarity=0.025 Sum_probs=67.4
Q ss_pred ccEEcC-CCCEEEEEecCC--------CceeEEEEECCCCCeeEEee-----cCCceeeeeecCCCEEEEEEcCCCcccC
Q 039497 334 FPSFSP-DGGLIVFNHDFE--------LNAGIKIAKSDGSKRWTLIK-----DRTAFYNSWSPTEKHVIYTSTGPIFQSE 399 (642)
Q Consensus 334 ~~~~sp-dg~~l~~~~~~~--------~~~~l~~~d~~~~~~~~l~~-----~~~~~~~~~spdg~~l~~~~~~~~~~~~ 399 (642)
..++.+ +|+.+++..... ....++++|..+++.+.+.. .......++.++|+.+++... .
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~------~ 263 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGN------D 263 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSS------S
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCC------C
Confidence 446677 776556644311 22478999999887665543 112234567788886666542 1
Q ss_pred CCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCc-cCcEECCCCCeEEEEeCCCC---ceeEEEEECCCCcc
Q 039497 400 RATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN-AFPSCSPDGKFLVFRSGRSG---HKNLFVLDAVNGEF 472 (642)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~SpDg~~l~~~~~~~g---~~~l~~~d~~~g~~ 472 (642)
...+++|+... + ....+......+. ...+..+||+.+++....++ ...++++|+.+++.
T Consensus 264 ~~~v~~yd~~t--~------------~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 264 AKKTSLYDSSS--D------------SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp TTCEEEEEGGG--T------------EEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred CCceEEecCcC--C------------ceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 33555555433 2 4455433221222 22456679987776652222 24788999987764
No 306
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.27 E-value=1.6 Score=46.69 Aligned_cols=82 Identities=7% Similarity=-0.043 Sum_probs=44.3
Q ss_pred eeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce
Q 039497 513 FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL 592 (642)
Q Consensus 513 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 592 (642)
..|+.+|+.+++..=-....... ..-.+...|..|++.+.+ ..|+.+|..++++
T Consensus 453 G~l~A~D~~tG~~~W~~~~~~~~---------~~g~~~tagg~vf~gt~d-----------------g~l~A~D~~tG~~ 506 (599)
T 1w6s_A 453 GQIKAYNAITGDYKWEKMERFAV---------WGGTMATAGDLVFYGTLD-----------------GYLKARDSDTGDL 506 (599)
T ss_dssp EEEEEECTTTCCEEEEEEESSCC---------CSBCEEETTTEEEEECTT-----------------SEEEEEETTTCCE
T ss_pred CeEEEEECCCCCEEeEecCCCCc---------cCcceEecCCEEEEECCC-----------------CeEEEEECCCCCE
Confidence 46888899887754222212111 112234456666654433 2899999887764
Q ss_pred e-eccCCCCCCC-CcEEecCCceEEeecCC
Q 039497 593 R-RLTWNGYENG-TPAWHPGNQLDLGKLRL 620 (642)
Q Consensus 593 ~-~lt~~~~~~~-~~~~s~dg~~~~~~~~~ 620 (642)
. +.....+... -..|..||+.++.....
T Consensus 507 lW~~~l~~g~~~~P~~y~~~G~qyv~~~~G 536 (599)
T 1w6s_A 507 LWKFKIPSGAIGYPMTYTHKGTQYVAIYYG 536 (599)
T ss_dssp EEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred EEEeeCCCCcEeccEEEEeCCEEEEEEEcc
Confidence 3 2322222223 34677899766554443
No 307
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.26 E-value=0.63 Score=44.71 Aligned_cols=223 Identities=7% Similarity=-0.047 Sum_probs=106.1
Q ss_pred ceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccc---e
Q 039497 353 NAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD---V 427 (642)
Q Consensus 353 ~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~ 427 (642)
...++.+|..+.+...+.. ..........-+++.+++.... .......++.++. . .. . .
T Consensus 30 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~----~~~~~~~~~~~d~--~-----~~-----~~~~W 93 (301)
T 2vpj_A 30 IDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYD----GRSRLSSVECLDY--T-----AD-----EDGVW 93 (301)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC----SSCBCCCEEEEET--T-----CC-----TTCCC
T ss_pred eeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCC----CCccCceEEEEEC--C-----CC-----CCCee
Confidence 3578999998887666543 1122222333355433333321 1111123444444 1 11 3 4
Q ss_pred EEccccCCCCccCcEECCCCCeEEEEeCCCC--ceeEEEEECCCCccccceeeCCCCCCc-ccceeEecCCCEEEEEecC
Q 039497 428 KILTKEETGNNAFPSCSPDGKFLVFRSGRSG--HKNLFVLDAVNGEFNGDIRQLTDGPWI-DTMPSWSPKGDLIAFSSNR 504 (642)
Q Consensus 428 ~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g--~~~l~~~d~~~g~~~~~~~~l~~~~~~-~~~~~~spdG~~l~~~~~~ 504 (642)
+.+...+.....+....-+++.+++...... ...++++|+.+.+. +.+...+.. ..+....-+++.+++....
T Consensus 94 ~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 169 (301)
T 2vpj_A 94 YSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQW----SMLGDMQTAREGAGLVVASGVIYCLGGYD 169 (301)
T ss_dssp EEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEE----EEEEECSSCCBSCEEEEETTEEEEECCBC
T ss_pred EECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeE----EECCCCCCCcccceEEEECCEEEEECCCC
Confidence 4444333122233333335544444322111 34799999998875 444332221 1122223356544444332
Q ss_pred CCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEE
Q 039497 505 HNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYV 584 (642)
Q Consensus 505 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 584 (642)
.. .....++++|+.+.+.+.+...... .........+++ |++.....+.. ....++.
T Consensus 170 ~~---~~~~~~~~~d~~~~~W~~~~~~p~~--------r~~~~~~~~~~~-i~v~GG~~~~~-----------~~~~v~~ 226 (301)
T 2vpj_A 170 GL---NILNSVEKYDPHTGHWTNVTPMATK--------RSGAGVALLNDH-IYVVGGFDGTA-----------HLSSVEA 226 (301)
T ss_dssp SS---CBCCCEEEEETTTTEEEEECCCSSC--------CBSCEEEEETTE-EEEECCBCSSS-----------BCCCEEE
T ss_pred CC---cccceEEEEeCCCCcEEeCCCCCcc--------cccceEEEECCE-EEEEeCCCCCc-----------ccceEEE
Confidence 21 1346699999999888877532211 112222333555 54443322110 1348999
Q ss_pred EEcCCCceeeccCCCCC-CCCcEEecCCceEEeec
Q 039497 585 VKLDGSGLRRLTWNGYE-NGTPAWHPGNQLDLGKL 618 (642)
Q Consensus 585 ~~~~~~~~~~lt~~~~~-~~~~~~s~dg~~~~~~~ 618 (642)
+|+....-+.+...... ....+..-++++++...
T Consensus 227 yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG 261 (301)
T 2vpj_A 227 YNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAG 261 (301)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEEETTEEEEECC
T ss_pred EeCCCCcEEECCCCCCcccceeEEEECCEEEEEcC
Confidence 99998876666542211 11223344677666543
No 308
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.26 E-value=1.6 Score=46.58 Aligned_cols=83 Identities=11% Similarity=0.039 Sum_probs=45.8
Q ss_pred ceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc
Q 039497 512 AFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG 591 (642)
Q Consensus 512 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 591 (642)
...|+.+|+.+++..=-...... .........|..|++.+.+ ..|+.+|..+++
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~---------~~~g~~~tagglvf~g~~d-----------------g~l~A~D~~tG~ 518 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLP---------LWAGVLATAGNLVFTGTGD-----------------GYFKAFDAKSGK 518 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSC---------CCSCCEEETTTEEEEECTT-----------------SEEEEEETTTCC
T ss_pred cceEEEEECCCCCEEEEecCCCC---------CcccceEeCCCEEEEECCC-----------------CcEEEEECCCCC
Confidence 35699999988876422221211 1112223345556554433 289999988776
Q ss_pred e-eeccCCCCCCC-CcEEecCCceEEeecCC
Q 039497 592 L-RRLTWNGYENG-TPAWHPGNQLDLGKLRL 620 (642)
Q Consensus 592 ~-~~lt~~~~~~~-~~~~s~dg~~~~~~~~~ 620 (642)
+ -+......... -+.|+.||+.+++....
T Consensus 519 ~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 519 ELWKFQTGSGIVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp EEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred EEEEecCCCCcccCceEEEECCEEEEEEEcc
Confidence 3 33333322222 35688999877665544
No 309
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.23 E-value=0.29 Score=47.41 Aligned_cols=168 Identities=8% Similarity=0.071 Sum_probs=97.1
Q ss_pred cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcccc-------CCCCccCcEE-
Q 039497 372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE-------ETGNNAFPSC- 443 (642)
Q Consensus 372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~- 443 (642)
......+.|.+....+++.+.. .+.+..| +. + ++ ....+... .......+.|
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~------~g~V~~~--~~--~-----~~-----~~~~~~~~~~s~~g~~~~~~sGl~~~ 71 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLY------KGRIEVY--NP--K-----TQ-----SHFNVVIDGASSNGDGEQQMSGLSLL 71 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETT------TTEEEEE--CT--T-----TC-----CEEEECCTTTCCSSCCSEEEEEEEES
T ss_pred ccCCcCccCcCCCCEEEEEecc------CCEEEEE--cC--C-----CC-----eEEEEecCCccccCCCcceeeEEEEe
Confidence 3456789999888888888732 3444434 33 1 12 22222111 0012356788
Q ss_pred --CCCCCeEEEEeC----------CCCceeEEEEECC---CCccccceee--CCC-----------CCCcccceeEecCC
Q 039497 444 --SPDGKFLVFRSG----------RSGHKNLFVLDAV---NGEFNGDIRQ--LTD-----------GPWIDTMPSWSPKG 495 (642)
Q Consensus 444 --SpDg~~l~~~~~----------~~g~~~l~~~d~~---~g~~~~~~~~--l~~-----------~~~~~~~~~~spdG 495 (642)
-|+|+.++.... ..+...|.++|+. +|+. +.. |.. .......++..++|
T Consensus 72 ~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~---~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G 148 (334)
T 2p9w_A 72 THDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKP---VWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG 148 (334)
T ss_dssp SSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCC---SEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS
T ss_pred ccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCE---EEEecCccccccccccccccccCCceeEECCCC
Confidence 588766654331 1235679999998 7774 221 211 11234567899999
Q ss_pred CEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCC
Q 039497 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQ 575 (642)
Q Consensus 496 ~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~ 575 (642)
+..+..+.. ...|++++.++.....+....... ..+....-+++.|||+.|+.... .+
T Consensus 149 naYVt~s~~-------~~~I~rV~pdG~~~~~~~~~~~~~---~~~~G~nGIv~~pdg~~Liv~~~-~g----------- 206 (334)
T 2p9w_A 149 NSYVAFALG-------MPAIARVSADGKTVSTFAWESGNG---GQRPGYSGITFDPHSNKLIAFGG-PR----------- 206 (334)
T ss_dssp CEEEEEEES-------SCEEEEECTTSCCEEEEEECCCCS---SSCCSCSEEEEETTTTEEEEESS-SS-----------
T ss_pred CEEEeCCCC-------CCeEEEEeCCCCEEeeeeecCCCc---ccccCcceEEEeCCCCEEEEEcC-CC-----------
Confidence 854433332 024999999987655443211110 01123567899999999888776 33
Q ss_pred CCCCCcEEEEEcCC
Q 039497 576 FQPYGDLYVVKLDG 589 (642)
Q Consensus 576 ~~~~~~l~~~~~~~ 589 (642)
+|+.+|+..
T Consensus 207 -----~L~~fD~~~ 215 (334)
T 2p9w_A 207 -----ALTAFDVSK 215 (334)
T ss_dssp -----SEEEEECSS
T ss_pred -----eEEEEcCCC
Confidence 899999874
No 310
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.17 E-value=1.9 Score=46.82 Aligned_cols=79 Identities=13% Similarity=0.026 Sum_probs=46.1
Q ss_pred eeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCc
Q 039497 460 KNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV 539 (642)
Q Consensus 460 ~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 539 (642)
..|+.+|+.+|+. +-..... .......++..|..|++...++ .|+.+|.++++..--.......
T Consensus 438 g~l~A~D~~tG~~---~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg--------~l~a~d~~tG~~l~~~~~~~~~---- 501 (668)
T 1kv9_A 438 GALLAWDPVKQKA---AWKVPYP-THWNGGTLSTAGNLVFQGTAAG--------QMHAYSADKGEALWQFEAQSGI---- 501 (668)
T ss_dssp EEEEEEETTTTEE---EEEEEES-SSCCCCEEEETTTEEEEECTTS--------EEEEEETTTCCEEEEEECSSCC----
T ss_pred ceEEEEeCCCCcE---EEEccCC-CCCcCceeEeCCCEEEEECCcc--------cchhhhhhcChhheEecCCCCc----
Confidence 5799999999985 2333222 1222335566777777764443 4999999988764333222111
Q ss_pred ccccccceEEcCCCCEEE
Q 039497 540 DRERINHVCFSADGEWLL 557 (642)
Q Consensus 540 ~~~~~~~~~~S~Dg~~l~ 557 (642)
....+.+..||+..+
T Consensus 502 ---~~~p~~~~~~G~~yv 516 (668)
T 1kv9_A 502 ---VAAPMTFELAGRQYV 516 (668)
T ss_dssp ---CSCCEEEEETTEEEE
T ss_pred ---ccCceEEEECCEEEE
Confidence 123456678887433
No 311
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.15 E-value=1 Score=43.33 Aligned_cols=201 Identities=8% Similarity=-0.008 Sum_probs=99.4
Q ss_pred ceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497 353 NAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL 430 (642)
Q Consensus 353 ~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 430 (642)
...++++|..+.+...+.. ..........-+++.+++.... .......++.++. . .. ..+.+
T Consensus 76 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~----~~~~~~~~~~~d~--~-----~~-----~W~~~ 139 (302)
T 2xn4_A 76 VRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFD----GSTGLSSVEAYNI--K-----SN-----EWFHV 139 (302)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEC----SSCEEEEEEEEET--T-----TT-----EEEEE
T ss_pred ccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCC----CCccCceEEEEeC--C-----CC-----eEeec
Confidence 3579999999888766654 1111222222355544444432 1112234555554 1 12 45555
Q ss_pred cccCCCCccCcEECCCCCeEEEEeCCCC----ceeEEEEECCCCccccceeeCCCCCCcccc-eeEecCCCEEEEEecCC
Q 039497 431 TKEETGNNAFPSCSPDGKFLVFRSGRSG----HKNLFVLDAVNGEFNGDIRQLTDGPWIDTM-PSWSPKGDLIAFSSNRH 505 (642)
Q Consensus 431 ~~~~~~~~~~~~~SpDg~~l~~~~~~~g----~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~-~~~spdG~~l~~~~~~~ 505 (642)
...+.....+....-+++.+++...... ...++++|+.+.+. ..+...+..... ....-+++.+++.....
T Consensus 140 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 215 (302)
T 2xn4_A 140 APMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEW----TYIAEMSTRRSGAGVGVLNNLLYAVGGHDG 215 (302)
T ss_dssp CCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEE----EEECCCSSCCBSCEEEEETTEEEEECCBSS
T ss_pred CCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcE----EECCCCccccccccEEEECCEEEEECCCCC
Confidence 4333122222233335544444321111 34799999998875 555433322111 22233555444443332
Q ss_pred CCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEE
Q 039497 506 NPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVV 585 (642)
Q Consensus 506 ~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 585 (642)
. .....++++|+.+.+.+.+...... .........+++.+++....+.. ....++.+
T Consensus 216 ~---~~~~~~~~yd~~~~~W~~~~~~~~~--------r~~~~~~~~~~~i~v~GG~~~~~------------~~~~v~~y 272 (302)
T 2xn4_A 216 P---LVRKSVEVYDPTTNAWRQVADMNMC--------RRNAGVCAVNGLLYVVGGDDGSC------------NLASVEYY 272 (302)
T ss_dssp S---SBCCCEEEEETTTTEEEEECCCSSC--------CBSCEEEEETTEEEEECCBCSSS------------BCCCEEEE
T ss_pred C---cccceEEEEeCCCCCEeeCCCCCCc--------cccCeEEEECCEEEEECCcCCCc------------ccccEEEE
Confidence 1 1245699999999888877542211 11222333466544443322211 12479999
Q ss_pred EcCCCceeecc
Q 039497 586 KLDGSGLRRLT 596 (642)
Q Consensus 586 ~~~~~~~~~lt 596 (642)
|+....-+.+.
T Consensus 273 d~~~~~W~~~~ 283 (302)
T 2xn4_A 273 NPTTDKWTVVS 283 (302)
T ss_dssp ETTTTEEEECS
T ss_pred cCCCCeEEECC
Confidence 99888766664
No 312
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.12 E-value=0.96 Score=43.44 Aligned_cols=224 Identities=6% Similarity=-0.090 Sum_probs=105.2
Q ss_pred eeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497 354 AGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT 431 (642)
Q Consensus 354 ~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 431 (642)
..++.+|+...+...+.. ..........-+++ |++..... .......++.++. . .. ..+.+.
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~-lyv~GG~~---~~~~~~~~~~~d~--~-----~~-----~W~~~~ 93 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYMAGL-VFAVGGFN---GSLRVRTVDSYDP--V-----KD-----QWTSVA 93 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTE-EEEESCBC---SSSBCCCEEEEET--T-----TT-----EEEEEC
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEECCE-EEEEeCcC---CCccccceEEECC--C-----CC-----ceeeCC
Confidence 568888888877655543 11111122222444 44432110 0111122444444 1 12 455554
Q ss_pred ccCCCCccCcEECCCCCeEEEEeCCCC--ceeEEEEECCCCccccceeeCCCCCCcccc-eeEecCCCEEEEEecCCCCC
Q 039497 432 KEETGNNAFPSCSPDGKFLVFRSGRSG--HKNLFVLDAVNGEFNGDIRQLTDGPWIDTM-PSWSPKGDLIAFSSNRHNPD 508 (642)
Q Consensus 432 ~~~~~~~~~~~~SpDg~~l~~~~~~~g--~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~-~~~spdG~~l~~~~~~~~~~ 508 (642)
..+.....+.+..-+++.+++...... ...++++|+.+.+. ..+...+..... ....-+++.+++.......
T Consensus 94 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~- 168 (302)
T 2xn4_A 94 NMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEW----FHVAPMNTRRSSVGVGVVGGLLYAVGGYDVAS- 168 (302)
T ss_dssp CCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEE----EEECCCSSCCBSCEEEEETTEEEEECCEETTT-
T ss_pred CCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeE----eecCCCCCcccCceEEEECCEEEEEeCCCCCC-
Confidence 433122233333346655555442221 24799999998875 555443322211 1222355544443322210
Q ss_pred CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcC
Q 039497 509 NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLD 588 (642)
Q Consensus 509 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 588 (642)
......++++|+.+.+.+.+...... ........-+++.+++....+.. ....++.+|+.
T Consensus 169 ~~~~~~~~~yd~~~~~W~~~~~~p~~--------r~~~~~~~~~~~iyv~GG~~~~~------------~~~~~~~yd~~ 228 (302)
T 2xn4_A 169 RQCLSTVECYNATTNEWTYIAEMSTR--------RSGAGVGVLNNLLYAVGGHDGPL------------VRKSVEVYDPT 228 (302)
T ss_dssp TEECCCEEEEETTTTEEEEECCCSSC--------CBSCEEEEETTEEEEECCBSSSS------------BCCCEEEEETT
T ss_pred CccccEEEEEeCCCCcEEECCCCccc--------cccccEEEECCEEEEECCCCCCc------------ccceEEEEeCC
Confidence 00145699999999888877532211 11222233355544443322211 13489999999
Q ss_pred CCceeeccCCCCC-CCCcEEecCCceEEeec
Q 039497 589 GSGLRRLTWNGYE-NGTPAWHPGNQLDLGKL 618 (642)
Q Consensus 589 ~~~~~~lt~~~~~-~~~~~~s~dg~~~~~~~ 618 (642)
...-+.+...... .......-++++++...
T Consensus 229 ~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG 259 (302)
T 2xn4_A 229 TNAWRQVADMNMCRRNAGVCAVNGLLYVVGG 259 (302)
T ss_dssp TTEEEEECCCSSCCBSCEEEEETTEEEEECC
T ss_pred CCCEeeCCCCCCccccCeEEEECCEEEEECC
Confidence 8876666543211 11223334666665543
No 313
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.90 E-value=1 Score=43.53 Aligned_cols=224 Identities=6% Similarity=-0.122 Sum_probs=104.2
Q ss_pred ceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCC---CcccCCCeEEEEEEEeecCCCCCCCCCccccce
Q 039497 353 NAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGP---IFQSERATVQIARVSFQLDPSDDNNREEIPCDV 427 (642)
Q Consensus 353 ~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 427 (642)
...++++|..+.+...+.. ..........-+++ |++..... ........ ++.++. . .. ..
T Consensus 38 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~--~~~~d~--~-----~~-----~W 102 (308)
T 1zgk_A 38 LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGL-LYAVGGRNNSPDGNTDSSA--LDCYNP--M-----TN-----QW 102 (308)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTE-EEEECCEEEETTEEEECCC--EEEEET--T-----TT-----EE
T ss_pred cceEEEEcCCCCeEeECCCCCcccccceEEEECCE-EEEECCCcCCCCCCeecce--EEEECC--C-----CC-----eE
Confidence 4678999998887666643 11111222223444 44432100 00000122 444444 1 12 45
Q ss_pred EEccccCCCCccCcEECCCCCeEEEEeCCC--CceeEEEEECCCCccccceeeCCCCCCcccc-eeEecCCCEEEEEecC
Q 039497 428 KILTKEETGNNAFPSCSPDGKFLVFRSGRS--GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTM-PSWSPKGDLIAFSSNR 504 (642)
Q Consensus 428 ~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~--g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~-~~~spdG~~l~~~~~~ 504 (642)
+.+...+..........-+++.+++..... ....++++|+.+.+. ..+...+..... ....-+++.+++....
T Consensus 103 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 178 (308)
T 1zgk_A 103 SPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEW----HLVAPMLTRRIGVGVAVLNRLLYAVGGFD 178 (308)
T ss_dssp EECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEE----EECCCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred eECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeE----eECCCCCccccceEEEEECCEEEEEeCCC
Confidence 555433312222233333555444422111 124799999998875 665543322111 1222255444443333
Q ss_pred CCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEE
Q 039497 505 HNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYV 584 (642)
Q Consensus 505 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 584 (642)
.. .....++++|+.+.+.+.+...... ........-+++.+++....+.. ....++.
T Consensus 179 ~~---~~~~~~~~yd~~~~~W~~~~~~p~~--------r~~~~~~~~~~~iyv~GG~~~~~------------~~~~v~~ 235 (308)
T 1zgk_A 179 GT---NRLNSAECYYPERNEWRMITAMNTI--------RSGAGVCVLHNCIYAAGGYDGQD------------QLNSVER 235 (308)
T ss_dssp SS---CBCCCEEEEETTTTEEEECCCCSSC--------CBSCEEEEETTEEEEECCBCSSS------------BCCCEEE
T ss_pred CC---CcCceEEEEeCCCCeEeeCCCCCCc--------cccceEEEECCEEEEEeCCCCCC------------ccceEEE
Confidence 21 1246799999998888776532211 11122222355544443322211 1348999
Q ss_pred EEcCCCceeeccCCCCC-CCCcEEecCCceEEeec
Q 039497 585 VKLDGSGLRRLTWNGYE-NGTPAWHPGNQLDLGKL 618 (642)
Q Consensus 585 ~~~~~~~~~~lt~~~~~-~~~~~~s~dg~~~~~~~ 618 (642)
+|+....-+.+...... .......-++++++...
T Consensus 236 yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG 270 (308)
T 1zgk_A 236 YDVETETWTFVAPMKHRRSALGITVHQGRIYVLGG 270 (308)
T ss_dssp EETTTTEEEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred EeCCCCcEEECCCCCCCccceEEEEECCEEEEEcC
Confidence 99998877766543211 11122234666665543
No 314
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.85 E-value=0.97 Score=43.38 Aligned_cols=201 Identities=7% Similarity=-0.020 Sum_probs=97.0
Q ss_pred ceeEEEEECCCCC---eeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccce
Q 039497 353 NAGIKIAKSDGSK---RWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDV 427 (642)
Q Consensus 353 ~~~l~~~d~~~~~---~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 427 (642)
...++++|..+.+ .+.+.. ..........-+++ |++..... .....-.++.++. . .. ..
T Consensus 77 ~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~-lyv~GG~~---~~~~~~~~~~~d~--~-----~~-----~W 140 (301)
T 2vpj_A 77 LSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDM-IYVSGGFD---GSRRHTSMERYDP--N-----ID-----QW 140 (301)
T ss_dssp CCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTE-EEEECCBC---SSCBCCEEEEEET--T-----TT-----EE
T ss_pred CceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCE-EEEEcccC---CCcccceEEEEcC--C-----CC-----eE
Confidence 3579999998887 666644 11122222223444 44433110 1111123444444 1 11 44
Q ss_pred EEccccCCCCccCcEECCCCCeEEEEeCCC--CceeEEEEECCCCccccceeeCCCCCCcccc-eeEecCCCEEEEEecC
Q 039497 428 KILTKEETGNNAFPSCSPDGKFLVFRSGRS--GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTM-PSWSPKGDLIAFSSNR 504 (642)
Q Consensus 428 ~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~--g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~-~~~spdG~~l~~~~~~ 504 (642)
..+...+.....+....-+++.+++..... ....++.+|+.+.+. +.+...+..... ....-+++ |++....
T Consensus 141 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~~~~-i~v~GG~ 215 (301)
T 2vpj_A 141 SMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHW----TNVTPMATKRSGAGVALLNDH-IYVVGGF 215 (301)
T ss_dssp EEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEE----EEECCCSSCCBSCEEEEETTE-EEEECCB
T ss_pred EECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcE----EeCCCCCcccccceEEEECCE-EEEEeCC
Confidence 444332212233333334665444432211 134799999998885 555443322211 22223554 5444433
Q ss_pred CCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEE
Q 039497 505 HNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYV 584 (642)
Q Consensus 505 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 584 (642)
.. ......++++|+.+.+.+.+...... .........+++.+++....+.. ....++.
T Consensus 216 ~~--~~~~~~v~~yd~~~~~W~~~~~~p~~--------r~~~~~~~~~~~i~v~GG~~~~~------------~~~~v~~ 273 (301)
T 2vpj_A 216 DG--TAHLSSVEAYNIRTDSWTTVTSMTTP--------RCYVGATVLRGRLYAIAGYDGNS------------LLSSIEC 273 (301)
T ss_dssp CS--SSBCCCEEEEETTTTEEEEECCCSSC--------CBSCEEEEETTEEEEECCBCSSS------------BEEEEEE
T ss_pred CC--CcccceEEEEeCCCCcEEECCCCCCc--------ccceeEEEECCEEEEEcCcCCCc------------ccccEEE
Confidence 21 11256799999999888877532211 12222333466644443322211 1237899
Q ss_pred EEcCCCceeecc
Q 039497 585 VKLDGSGLRRLT 596 (642)
Q Consensus 585 ~~~~~~~~~~lt 596 (642)
+|+....-+.+.
T Consensus 274 yd~~~~~W~~~~ 285 (301)
T 2vpj_A 274 YDPIIDSWEVVT 285 (301)
T ss_dssp EETTTTEEEEEE
T ss_pred EcCCCCeEEEcC
Confidence 998887655553
No 315
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.73 E-value=3.3 Score=45.90 Aligned_cols=199 Identities=9% Similarity=0.005 Sum_probs=110.1
Q ss_pred eeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE
Q 039497 354 AGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI 429 (642)
Q Consensus 354 ~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 429 (642)
..|++++..+++.+.+.. ...+..+...++|+ |++.. ...+ +.++. . ++ ....
T Consensus 427 ~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt--------~~Gl--~~~~~--~-----~~-----~~~~ 483 (781)
T 3v9f_A 427 GNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGT--------HAGV--FVIDL--A-----SK-----KVIH 483 (781)
T ss_dssp EEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEE--------TTEE--EEEES--S-----SS-----SCCE
T ss_pred CCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEE--------CCce--EEEeC--C-----CC-----eEEe
Confidence 578888877766554432 23345555555554 55554 2333 44433 1 11 2222
Q ss_pred ccccC-----CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC----CcccceeEecCCCEEEE
Q 039497 430 LTKEE-----TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP----WIDTMPSWSPKGDLIAF 500 (642)
Q Consensus 430 l~~~~-----~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~----~~~~~~~~spdG~~l~~ 500 (642)
+.... ...+..+...++|+ |.+.+... .|++++.++++. +.+.... ..+..+..+++|+ |++
T Consensus 484 ~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~~~---Gl~~~~~~~~~~----~~~~~~~~l~~~~i~~i~~d~~g~-lWi 554 (781)
T 3v9f_A 484 HYDTSNSQLLENFVRSIAQDSEGR-FWIGTFGG---GVGIYTPDMQLV----RKFNQYEGFCSNTINQIYRSSKGQ-MWL 554 (781)
T ss_dssp EECTTTSSCSCSCEEEEEECTTCC-EEEEESSS---CEEEECTTCCEE----EEECTTTTCSCSCEEEEEECTTSC-EEE
T ss_pred cccCcccccccceeEEEEEcCCCC-EEEEEcCC---CEEEEeCCCCeE----EEccCCCCCCCCeeEEEEECCCCC-EEE
Confidence 21110 12345566677775 44444322 499999887763 5544321 2334556677786 566
Q ss_pred EecCCCCCCCCceeE-EEEeCCCCceEEeeec-CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCC
Q 039497 501 SSNRHNPDNVEAFSL-YVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQP 578 (642)
Q Consensus 501 ~~~~~~~~~~~~~~l-~~~d~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~ 578 (642)
....+ | +++|.++++.+..... +... ..+..+...++|+ |++....
T Consensus 555 ~T~~G---------lv~~~d~~~~~~~~~~~~~gl~~------~~i~~i~~d~~g~-lW~~t~~---------------- 602 (781)
T 3v9f_A 555 ATGEG---------LVCFPSARNFDYQVFQRKEGLPN------THIRAISEDKNGN-IWASTNT---------------- 602 (781)
T ss_dssp EETTE---------EEEESCTTTCCCEEECGGGTCSC------CCCCEEEECSSSC-EEEECSS----------------
T ss_pred EECCC---------ceEEECCCCCcEEEccccCCCCC------ceEEEEEECCCCC-EEEEcCC----------------
Confidence 65533 7 9999988877766532 1111 1345677777886 5555432
Q ss_pred CCcEEEEEcCCCceeeccCCCCCC------CCcEEecCCceEEeec
Q 039497 579 YGDLYVVKLDGSGLRRLTWNGYEN------GTPAWHPGNQLDLGKL 618 (642)
Q Consensus 579 ~~~l~~~~~~~~~~~~lt~~~~~~------~~~~~s~dg~~~~~~~ 618 (642)
.|..++..++..+.+....+.. .+...++||+++++..
T Consensus 603 --Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~ 646 (781)
T 3v9f_A 603 --GISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSI 646 (781)
T ss_dssp --CEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEEEET
T ss_pred --ceEEEECCCCceEEecccCCccccccccCceEECCCCEEEEECC
Confidence 5888888877776665432221 2345567888877653
No 316
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.68 E-value=1.3 Score=45.82 Aligned_cols=203 Identities=16% Similarity=0.103 Sum_probs=107.6
Q ss_pred CCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeee--cCCCEEEEEEcCCCccc---------CCCeEE
Q 039497 339 PDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWS--PTEKHVIYTSTGPIFQS---------ERATVQ 404 (642)
Q Consensus 339 pdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~s--pdg~~l~~~~~~~~~~~---------~~~~~~ 404 (642)
-||++|+... ..+.+|-+++++.-+..++.. ...++...+- |+-.+++..+.-..... ...+..
T Consensus 140 yDGrylfiNd--kan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~ 217 (638)
T 3sbq_A 140 YDGKYLFIND--KANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYT 217 (638)
T ss_dssp EEEEEEEEEE--TTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEE
T ss_pred eeeEEEEEec--CCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhce
Confidence 3677666544 345788999999887777665 4455666664 77777776654311111 111222
Q ss_pred EE-EEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCC------------Ccee----------
Q 039497 405 IA-RVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRS------------GHKN---------- 461 (642)
Q Consensus 405 l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~------------g~~~---------- 461 (642)
++ .++. ...++ ..+.+. . +.......+++|+|.++++... ..-.
T Consensus 218 ~f~~iD~--------~tm~v--~~Qv~v--~-gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie 284 (638)
T 3sbq_A 218 MYNAIDA--------ETMEM--AFQVIV--D-GNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVE 284 (638)
T ss_dssp EEEEEET--------TTCSE--EEEEEE--S-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHH
T ss_pred EEEEEcC--------CccEE--EEEEEc--C-CChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHH
Confidence 22 2332 12111 122222 2 4556678899999988876432 1112
Q ss_pred ---------------EEEEECCC----CccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497 462 ---------------LFVLDAVN----GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG 522 (642)
Q Consensus 462 ---------------l~~~d~~~----g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~ 522 (642)
+-++|... +.. +......+.....+..+|||++++....-. ..+.++|++.
T Consensus 285 ~~vk~G~~~~~~g~gv~ViD~~~~~~~~~~---~~~~iP~pksPHGv~vsPDGkyi~v~GKLs-------ptvtV~d~~k 354 (638)
T 3sbq_A 285 AAVKAGDFITLGDSKTPVLDGRKKDGKDSK---FTRYVPVPKNPHGCNTSSDGKYFIAAGKLS-------PTCSMIAIDK 354 (638)
T ss_dssp HHHHTTCCBCCTTCCCCEEECSCBTTBCCS---SEEEEEESSSCCCEEECTTSCEEEEECTTS-------SBEEEEEGGG
T ss_pred HHHhcCCeEEECCCCeeEEccccccccCCc---eEEEEeCCCCCcceeeCCCCCEEEEcCCCC-------CeEEEEEeeh
Confidence 33334332 110 111111122345668999999998887644 3478888752
Q ss_pred ------Cce----EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC
Q 039497 523 ------SGL----RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589 (642)
Q Consensus 523 ------~~~----~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 589 (642)
+++ ..+...-..+ ..+.+.+|.++| .+|++.--. .+|..|+++.
T Consensus 355 ~~~~~~~k~~~~~~~~~ae~e~G------lGPlHt~Fd~~G--~aYTtlfid---------------SqvvkWni~~ 408 (638)
T 3sbq_A 355 LPDLFAGKLADPRDVIVGEPELG------LGPLHTTFDGRG--NAYTTLFID---------------SQVVKWNMEE 408 (638)
T ss_dssp HHHHHTTCCSCGGGGEEECCBCC------SCEEEEEECSSS--EEEEEETTT---------------TEEEEEEHHH
T ss_pred hhhhhhccccCcccceEeeccCC------CcccEEEECCCC--ceEeeeeec---------------ceEEEEeccH
Confidence 111 0011111111 145688999999 455654322 2788888754
No 317
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.68 E-value=0.82 Score=44.04 Aligned_cols=202 Identities=6% Similarity=-0.078 Sum_probs=97.1
Q ss_pred ceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497 353 NAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL 430 (642)
Q Consensus 353 ~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 430 (642)
...++++|..+.+...+.. ..........-+++.+++..... .......+.+++... . ..+.+
T Consensus 69 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~d~~~---------~-----~W~~~ 133 (306)
T 3ii7_A 69 IKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEV-GNSALYLFECYDTRT---------E-----SWHTK 133 (306)
T ss_dssp CCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBT-TBSCCCCEEEEETTT---------T-----EEEEE
T ss_pred cceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCC-CCcEeeeEEEEeCCC---------C-----ceEeC
Confidence 4679999999887766654 11222222233454333332210 001112334443322 1 44555
Q ss_pred cccCCCCccCcEECCCCCeEEEEeCCC--C----ceeEEEEECCCCccccceeeCCCCCCcccc-eeEecCCCEEEEEec
Q 039497 431 TKEETGNNAFPSCSPDGKFLVFRSGRS--G----HKNLFVLDAVNGEFNGDIRQLTDGPWIDTM-PSWSPKGDLIAFSSN 503 (642)
Q Consensus 431 ~~~~~~~~~~~~~SpDg~~l~~~~~~~--g----~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~-~~~spdG~~l~~~~~ 503 (642)
...+.....+....-+++.+++..... . ...++++|+.+.+. ..+...+..... ....-+++.+++...
T Consensus 134 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~i~v~GG~ 209 (306)
T 3ii7_A 134 PSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW----TELCPMIEARKNHGLVFVKDKIFAVGGQ 209 (306)
T ss_dssp CCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEE----EEECCCSSCCBSCEEEEETTEEEEECCE
T ss_pred CCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeE----EECCCccchhhcceEEEECCEEEEEeCC
Confidence 433312233333334554444432111 1 45799999998875 555443322111 222225554444332
Q ss_pred CCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEE
Q 039497 504 RHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLY 583 (642)
Q Consensus 504 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 583 (642)
... .....++++|+.+.+.+.+...... ........-+++.+++....+.. ....++
T Consensus 210 ~~~---~~~~~~~~yd~~~~~W~~~~~~p~~--------r~~~~~~~~~~~i~v~GG~~~~~------------~~~~~~ 266 (306)
T 3ii7_A 210 NGL---GGLDNVEYYDIKLNEWKMVSPMPWK--------GVTVKCAAVGSIVYVLAGFQGVG------------RLGHIL 266 (306)
T ss_dssp ETT---EEBCCEEEEETTTTEEEECCCCSCC--------BSCCEEEEETTEEEEEECBCSSS------------BCCEEE
T ss_pred CCC---CCCceEEEeeCCCCcEEECCCCCCC--------ccceeEEEECCEEEEEeCcCCCe------------eeeeEE
Confidence 221 1245699999999888877532211 11222222356544444332211 134899
Q ss_pred EEEcCCCceeecc
Q 039497 584 VVKLDGSGLRRLT 596 (642)
Q Consensus 584 ~~~~~~~~~~~lt 596 (642)
.+|+...+-+.+.
T Consensus 267 ~yd~~~~~W~~~~ 279 (306)
T 3ii7_A 267 EYNTETDKWVANS 279 (306)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEcCCCCeEEeCC
Confidence 9999887755543
No 318
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.36 E-value=2.1 Score=41.27 Aligned_cols=213 Identities=10% Similarity=-0.057 Sum_probs=100.1
Q ss_pred eeEEEEECCCCCeeEEee-c-CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497 354 AGIKIAKSDGSKRWTLIK-D-RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT 431 (642)
Q Consensus 354 ~~l~~~d~~~~~~~~l~~-~-~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 431 (642)
..++++|..+.+...+.. . .........-++ +|++...............++.++. . .. ..+.+.
T Consensus 67 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~~d~--~-----~~-----~W~~~~ 133 (315)
T 4asc_A 67 AYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALN-SIYVVGGREIKDGERCLDSVMCYDR--L-----SF-----KWGESD 133 (315)
T ss_dssp EEEEEEETTTTEEEECCCBSSCEESCEEEEETT-EEEEECCEESSTTCCBCCCEEEEET--T-----TT-----EEEECC
T ss_pred cceEEecCCCCeEEECCCCCcchhceeEEEECC-EEEEEeCCcCCCCCcccceEEEECC--C-----CC-----cEeECC
Confidence 348999998887666543 1 111111122244 4444332100000111223444444 1 12 455554
Q ss_pred ccCCCCccCcEECCCCCeEEEEeCCCC---ceeEEEEECCCCccccceeeCCCCCCcc-cceeEecCCCEEEEEecCCCC
Q 039497 432 KEETGNNAFPSCSPDGKFLVFRSGRSG---HKNLFVLDAVNGEFNGDIRQLTDGPWID-TMPSWSPKGDLIAFSSNRHNP 507 (642)
Q Consensus 432 ~~~~~~~~~~~~SpDg~~l~~~~~~~g---~~~l~~~d~~~g~~~~~~~~l~~~~~~~-~~~~~spdG~~l~~~~~~~~~ 507 (642)
..+.....+.+..-+++.+++.....+ ...++++|+.+.+. +.+...+..- .+....-+++.+++......
T Consensus 134 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~- 208 (315)
T 4asc_A 134 PLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW----KELAPMQTARSLFGATVHDGRIIVAAGVTDT- 208 (315)
T ss_dssp CCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEE----EECCCCSSCCBSCEEEEETTEEEEEEEECSS-
T ss_pred CCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeE----EECCCCCCchhceEEEEECCEEEEEeccCCC-
Confidence 433223333344445654444332111 34899999998875 6655433221 12222336665555554332
Q ss_pred CCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEc
Q 039497 508 DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKL 587 (642)
Q Consensus 508 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 587 (642)
.....++++|+.+.+.+.+...... ........-+++.+++........ ..... ......++|.+|+
T Consensus 209 --~~~~~~~~yd~~~~~W~~~~~~p~~--------r~~~~~~~~~~~l~v~GG~~~~~~-~~~~~--~~~~~~~v~~yd~ 275 (315)
T 4asc_A 209 --GLTSSAEVYSITDNKWAPFEAFPQE--------RSSLSLVSLVGTLYAIGGFATLET-ESGEL--VPTELNDIWRYNE 275 (315)
T ss_dssp --SEEEEEEEEETTTTEEEEECCCSSC--------CBSCEEEEETTEEEEEEEEEEEEC-TTSCE--EEEEEEEEEEEET
T ss_pred --CccceEEEEECCCCeEEECCCCCCc--------ccceeEEEECCEEEEECCccccCc-CCccc--cccccCcEEEecC
Confidence 1356799999999988887542211 122223334665445443321000 00000 0001237999999
Q ss_pred CCCceeeccC
Q 039497 588 DGSGLRRLTW 597 (642)
Q Consensus 588 ~~~~~~~lt~ 597 (642)
...+-+.+..
T Consensus 276 ~~~~W~~~~~ 285 (315)
T 4asc_A 276 EEKKWEGVLR 285 (315)
T ss_dssp TTTEEEEEES
T ss_pred CCChhhhhcc
Confidence 9887666643
No 319
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=95.33 E-value=0.019 Score=57.78 Aligned_cols=178 Identities=12% Similarity=0.106 Sum_probs=71.8
Q ss_pred cceEEEEeecCCceeeeEEEecCCCCCCCCCcee-eecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcC-CCCcc
Q 039497 4 KGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEH-RLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRP-GSSKT 81 (642)
Q Consensus 4 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~-~g~~~ 81 (642)
+++|++. . ..+.|+.+++.. |+.. ++.. ......| +. ++|+.++ ....+|. |+.++. .|+..
T Consensus 9 ~~~v~~g-s----~dg~v~a~d~~t-----G~~~W~~~~-~~~~s~p-~~-~~g~~~v-~~s~dg~--l~a~d~~tG~~~ 72 (369)
T 2hz6_A 9 ETLLFVS-T----LDGSLHAVSKRT-----GSIKWTLKE-DPVLQVP-TH-VEEPAFL-PDPNDGS--LYTLGSKNNEGL 72 (369)
T ss_dssp TTEEEEE-E----TTSEEEEEETTT-----CCEEEEEEC-CCSCCCC-------CCEE-ECTTTCC--EEEC-----CCS
T ss_pred CCEEEEE-c----CCCEEEEEECCC-----CCEEEEecC-CCceecc-eE-cCCCEEE-EeCCCCE--EEEEECCCCcee
Confidence 4555554 2 357899998766 5553 4443 2233333 55 6776554 3333443 555543 33211
Q ss_pred cccCCCCCCcccccccc-CCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecC
Q 039497 82 ELLPSIPCSLFHDRPVA-RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYE 160 (642)
Q Consensus 82 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~ 160 (642)
..............|.+ .++.|++.... +.|+.+++.+|+..--..... ...++|++..|++...+
T Consensus 73 w~~~~~~~~~~~~sp~~~~~~~v~~g~~d----------g~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~d 139 (369)
T 2hz6_A 73 TKLPFTIPELVQASPCRSSDGILYMGKKQ----------DIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTE 139 (369)
T ss_dssp EECSCCHHHHHTTCSCC-----CCCCEEE----------EEEEEECCC-------------------------EEEEEEE
T ss_pred eeeeccCccccccCceEecCCEEEEEeCC----------CEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecC
Confidence 11110000001123444 55555443322 268999988877643222211 23567888888876543
Q ss_pred CCCCCCCCCCCeeeEEEEEecCCCceeEee-cCCCcceEeeC----CeEEEEEecCCCceEEEEEecCCCc
Q 039497 161 SRPWPGEFHELNTDIVVFQESDPNKRVIVC-ERGGWPTWSGD----STIYFHRQADDGWWSIFRVSFPENL 226 (642)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~~~~~wspd----g~~~~~~~~~~g~~~l~~~~~~~~~ 226 (642)
..|+.++..+|+...-.. .....+...++ +.+++.. .+| .|+.++..+|.
T Consensus 140 ------------g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~--~dg--~v~a~d~~tG~ 194 (369)
T 2hz6_A 140 ------------YTITMYDTKTRELRWNATYFDYAASLPEDDVDYKMSHFVSN--GDG--LVVTVDSESGD 194 (369)
T ss_dssp ------------EEEECCCSSSSSCCCEEEEEEECCBCCCCCTTCCCCEEEEE--TSC--EEEEECTTTCC
T ss_pred ------------CEEEEEECCCCCEEEeEecccccCccccCCccccceEEEEC--CCC--EEEEEECCCCc
Confidence 368888888887532221 11122444443 4455443 345 78888887773
No 320
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=95.21 E-value=4 Score=43.46 Aligned_cols=83 Identities=13% Similarity=0.090 Sum_probs=45.8
Q ss_pred ceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCC
Q 039497 459 HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGD 538 (642)
Q Consensus 459 ~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 538 (642)
...|+.+|+.+|+. +-+..... ..........|..|++...++ .|+.+|.++++..--.......
T Consensus 465 ~G~l~A~D~~tG~~---~W~~~~~~-~~~~g~~~tagglvf~g~~dg--------~l~A~D~~tG~~lW~~~~~~g~--- 529 (582)
T 1flg_A 465 VGSLRAMDPVSGKV---VWEHKEHL-PLWAGVLATAGNLVFTGTGDG--------YFKAFDAKSGKELWKFQTGSGI--- 529 (582)
T ss_dssp SEEEEEECTTTCCE---EEEEEESS-CCCSCCEEETTTEEEEECTTS--------EEEEEETTTCCEEEEEECSSCC---
T ss_pred cceEEEEECCCCCE---EEEecCCC-CCcccceEeCCCEEEEECCCC--------cEEEEECCCCCEEEEecCCCCc---
Confidence 45899999999985 22322211 112222333456666654443 4999999888764333222211
Q ss_pred cccccccceEEcCCCCEEEEEE
Q 039497 539 VDRERINHVCFSADGEWLLFTA 560 (642)
Q Consensus 539 ~~~~~~~~~~~S~Dg~~l~~~~ 560 (642)
....+.|+.||+..+...
T Consensus 530 ----~a~P~~y~~~G~qYv~~~ 547 (582)
T 1flg_A 530 ----VSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp ----CSCCEEEEETTEEEEEEE
T ss_pred ----ccCceEEEECCEEEEEEE
Confidence 223467788997544433
No 321
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.13 E-value=1.2 Score=42.98 Aligned_cols=200 Identities=7% Similarity=-0.106 Sum_probs=94.1
Q ss_pred eeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497 354 AGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT 431 (642)
Q Consensus 354 ~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 431 (642)
..++++|..+.+...+.. ..........-+++.+++..... ......+.+++... . ....+.
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~yd~~~---------~-----~W~~~~ 153 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHG--CIHHNSVERYEPER---------D-----EWHLVA 153 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEET--TEECCCEEEEETTT---------T-----EEEECC
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCC--CcccccEEEECCCC---------C-----eEeECC
Confidence 568999998887666644 11111222222454333322110 00012333333322 1 445544
Q ss_pred ccCCCCccCcEECCCCCeEEEEeCCCC--ceeEEEEECCCCccccceeeCCCCCCcccce-eEecCCCEEEEEecCCCCC
Q 039497 432 KEETGNNAFPSCSPDGKFLVFRSGRSG--HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP-SWSPKGDLIAFSSNRHNPD 508 (642)
Q Consensus 432 ~~~~~~~~~~~~SpDg~~l~~~~~~~g--~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~-~~spdG~~l~~~~~~~~~~ 508 (642)
..+.....+....-+++.+++...... ...++++|+.+.+. ..+...+..-... ...-+++.+++......
T Consensus 154 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-- 227 (308)
T 1zgk_A 154 PMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEW----RMITAMNTIRSGAGVCVLHNCIYAAGGYDGQ-- 227 (308)
T ss_dssp CCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEE----EECCCCSSCCBSCEEEEETTEEEEECCBCSS--
T ss_pred CCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeE----eeCCCCCCccccceEEEECCEEEEEeCCCCC--
Confidence 332122222223335544444322111 34799999998875 5554433221111 22225554444433221
Q ss_pred CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcC
Q 039497 509 NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLD 588 (642)
Q Consensus 509 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 588 (642)
.....++++|+.+.+.+.+...... ........-+++.+++....+.. ....++.+|+.
T Consensus 228 -~~~~~v~~yd~~~~~W~~~~~~p~~--------r~~~~~~~~~~~i~v~GG~~~~~------------~~~~v~~yd~~ 286 (308)
T 1zgk_A 228 -DQLNSVERYDVETETWTFVAPMKHR--------RSALGITVHQGRIYVLGGYDGHT------------FLDSVECYDPD 286 (308)
T ss_dssp -SBCCCEEEEETTTTEEEECCCCSSC--------CBSCEEEEETTEEEEECCBCSSC------------BCCEEEEEETT
T ss_pred -CccceEEEEeCCCCcEEECCCCCCC--------ccceEEEEECCEEEEEcCcCCCc------------ccceEEEEcCC
Confidence 1346799999999888776532211 11222222356544443322211 13489999998
Q ss_pred CCceeecc
Q 039497 589 GSGLRRLT 596 (642)
Q Consensus 589 ~~~~~~lt 596 (642)
..+-+.+.
T Consensus 287 ~~~W~~~~ 294 (308)
T 1zgk_A 287 TDTWSEVT 294 (308)
T ss_dssp TTEEEEEE
T ss_pred CCEEeecC
Confidence 87765553
No 322
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.08 E-value=4.8 Score=43.69 Aligned_cols=81 Identities=9% Similarity=-0.015 Sum_probs=47.2
Q ss_pred eeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce
Q 039497 513 FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL 592 (642)
Q Consensus 513 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 592 (642)
..|+.+|+.+++..=-..... ......++..|..|++.+.+ ..|+.+|..++++
T Consensus 438 g~l~A~D~~tG~~~W~~~~~~---------~~~~~~~~t~gg~vf~g~~d-----------------g~l~a~d~~tG~~ 491 (668)
T 1kv9_A 438 GALLAWDPVKQKAAWKVPYPT---------HWNGGTLSTAGNLVFQGTAA-----------------GQMHAYSADKGEA 491 (668)
T ss_dssp EEEEEEETTTTEEEEEEEESS---------SCCCCEEEETTTEEEEECTT-----------------SEEEEEETTTCCE
T ss_pred ceEEEEeCCCCcEEEEccCCC---------CCcCceeEeCCCEEEEECCc-----------------ccchhhhhhcChh
Confidence 679999999887642222121 11234556677777665433 2899999887764
Q ss_pred -eeccCCCCCC-CCcEEecCCceEEeecC
Q 039497 593 -RRLTWNGYEN-GTPAWHPGNQLDLGKLR 619 (642)
Q Consensus 593 -~~lt~~~~~~-~~~~~s~dg~~~~~~~~ 619 (642)
.++....... .-..+..||+.+++...
T Consensus 492 l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 492 LWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp EEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred heEecCCCCcccCceEEEECCEEEEEEEe
Confidence 3443333222 33456788976655433
No 323
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.83 E-value=1.1 Score=46.22 Aligned_cols=157 Identities=13% Similarity=0.164 Sum_probs=80.6
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-c---------CCceeeeeecC---CCEEEEEEcCCCc-ccC
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-D---------RTAFYNSWSPT---EKHVIYTSTGPIF-QSE 399 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~---------~~~~~~~~spd---g~~l~~~~~~~~~-~~~ 399 (642)
.++|.|||+.+ ++.. ....|++++..++....+.. . .....++|+|| +..||+....... ..+
T Consensus 31 ~~a~~pdG~l~-V~e~--~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 31 ALLWGPDNQIW-LTER--ATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp EEEECTTSCEE-EEET--TTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred EEEEcCCCcEE-EEEc--CCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 56889999843 3332 12468888876565544432 1 23447899997 7777776531000 000
Q ss_pred C---CeEEEEEEEeecCCCCCCCCCccccceEEc----cccCCCCccCcEECCCCCeEEEEeCCCC--------------
Q 039497 400 R---ATVQIARVSFQLDPSDDNNREEIPCDVKIL----TKEETGNNAFPSCSPDGKFLVFRSGRSG-------------- 458 (642)
Q Consensus 400 ~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~SpDg~~l~~~~~~~g-------------- 458 (642)
. ....|+++.. +. +...+. ..+.| ..........++|.|||+ |+++....+
T Consensus 108 ~~~~~~~~v~r~~~--~~----~~~~~~-~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~Gd~~~~~~~~~~~~~~~~ 179 (454)
T 1cru_A 108 KELPNQTIIRRYTY--NK----STDTLE-KPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGDQGRNQLAYLFLPNQAQ 179 (454)
T ss_dssp CCSCEEEEEEEEEE--ET----TTTEEE-EEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECCTTTTSGGGTTSCCCTT
T ss_pred cccccccEEEEEEE--CC----CCCCcC-CcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEECCCCCCCccccccccccc
Confidence 1 1456666655 20 111110 11222 111112345689999996 555533211
Q ss_pred ----------------ceeEEEEECCCCcccc--------ceeeCCCCCCcccceeEecCCCEEEEEec
Q 039497 459 ----------------HKNLFVLDAVNGEFNG--------DIRQLTDGPWIDTMPSWSPKGDLIAFSSN 503 (642)
Q Consensus 459 ----------------~~~l~~~d~~~g~~~~--------~~~~l~~~~~~~~~~~~spdG~~l~~~~~ 503 (642)
...|++++.++ +.+. ..+....+..+...++|+|+|+ |++...
T Consensus 180 ~~p~~~~~~aq~~~~~~G~IlRi~~dG-~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~-L~~~d~ 246 (454)
T 1cru_A 180 HTPTQQELNGKDYHTYMGKVLRLNLDG-SIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQSEQ 246 (454)
T ss_dssp CCCCHHHHHTTCCTTCSSEEEEECTTS-CCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEEEE
T ss_pred cccccccccccCCCCCCeeEEEEeCCC-CCCCCCCCCCCCcceEEEECCCCcceEEECCCCC-EEEEec
Confidence 34799998874 3100 0123333334556779999887 444443
No 324
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.77 E-value=3.1 Score=40.06 Aligned_cols=233 Identities=12% Similarity=-0.017 Sum_probs=116.0
Q ss_pred CCCcceEEEEeecCCceeeeEEEecCCCCCCCCCceeeec--CCceeeeeceecCCCCCeEEEEEcc---CC-----Ccc
Q 039497 1 MEPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLT--DGTSINFNAQFVDGQDQTIAFISER---SG-----SPR 70 (642)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt--~~~~~~~~~~~S~pDG~~laf~~~~---~g-----~~~ 70 (642)
|...+.|+.. -+.++|..+... ++-.... ............ -+++.++|-... ++ ..+
T Consensus 1 ~~~~~~l~~~------GG~~~~~yd~~~-----~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~ 68 (315)
T 4asc_A 1 MFLQDLIFMI------SEEGAVAYDPAA-----NECYCASLSSQVPKNHVSLVT-KENQVFVAGGLFYNEDNKEDPMSAY 68 (315)
T ss_dssp CCCEEEEEEE------ETTEEEEEETTT-----TEEEEEECCCCSCSSEEEEEC-TTCCEEEEEEEEECSSCSSSCEEEE
T ss_pred CccceEEEEE------cCCceEEECCCC-----CeEecCCCCCCCCccceEEEE-ECCEEEEEcCcccCCCCCccccccc
Confidence 4555555555 235677776665 4433211 111233444556 678777776531 11 123
Q ss_pred eEEEcCCCCcccccCCCCCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCc-cCCceeCC
Q 039497 71 IYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVV-DYSPSVSY 149 (642)
Q Consensus 71 l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~-~~~~~~SP 149 (642)
+|..++....=..+............+.-+++|+......... ......++|++++.+.+.+++..-+.. ..+.+..-
T Consensus 69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 147 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKD-GERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH 147 (315)
T ss_dssp EEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESST-TCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred eEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCC-CCcccceEEEECCCCCcEeECCCCCCcccceeEEEE
Confidence 6776554422112222111111112222355555544422100 011234799999999988888754332 22334455
Q ss_pred CCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC---CcceEeeCCeEEEEEec-CCC-ceEEEEEecCC
Q 039497 150 SGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG---GWPTWSGDSTIYFHRQA-DDG-WWSIFRVSFPE 224 (642)
Q Consensus 150 DG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~wspdg~~~~~~~~-~~g-~~~l~~~~~~~ 224 (642)
+++.+++..... ......+++++++.+.+..++..... ...+..-++++++.... ..+ ...++.+|+.+
T Consensus 148 ~~~iyv~GG~~~------~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~ 221 (315)
T 4asc_A 148 MDLVYVIGGKGS------DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITD 221 (315)
T ss_dssp TTEEEEECCBCT------TSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred CCEEEEEeCCCC------CCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCC
Confidence 666555554311 01234579999999888777654211 22344457788777622 122 23789999888
Q ss_pred CcccccCCccceeeCCCCC-ccccceeecCCcEEEEE
Q 039497 225 NLEFLGFPIAPTRVTPPGV-HCFTPAAFHDGKRLAVA 260 (642)
Q Consensus 225 ~~~~~~~~~~~~~l~~~~~-~~~~~~~SpdG~~l~~~ 260 (642)
. .-+.+..... .....+..-+++.+++.
T Consensus 222 ~--------~W~~~~~~p~~r~~~~~~~~~~~l~v~G 250 (315)
T 4asc_A 222 N--------KWAPFEAFPQERSSLSLVSLVGTLYAIG 250 (315)
T ss_dssp T--------EEEEECCCSSCCBSCEEEEETTEEEEEE
T ss_pred C--------eEEECCCCCCcccceeEEEECCEEEEEC
Confidence 6 5555544321 22222334466544443
No 325
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=94.40 E-value=4.1 Score=39.77 Aligned_cols=181 Identities=12% Similarity=0.088 Sum_probs=90.9
Q ss_pred eEEEEEecCCCceeEeecCCC----cceEeeCCe---EEEEEecC--CCceEEEEEecCCCcccccCCccceeeCC----
Q 039497 174 DIVVFQESDPNKRVIVCERGG----WPTWSGDST---IYFHRQAD--DGWWSIFRVSFPENLEFLGFPIAPTRVTP---- 240 (642)
Q Consensus 174 ~l~~~~~~~g~~~~l~~~~~~----~~~wspdg~---~~~~~~~~--~g~~~l~~~~~~~~~~~~~~~~~~~~l~~---- 240 (642)
.|+++++.+...+.+....-+ .+.+.-.|+ ++++.+.. .+...+|.++..++ ....+..
T Consensus 51 gL~Vydl~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~--------~l~~i~~~~~p 122 (355)
T 3amr_A 51 GLVVYSLDGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG--------TLQSMTDPDHP 122 (355)
T ss_dssp EEEEEETTSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC--------CEEECSCTTSC
T ss_pred CEEEEcCCCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC--------ceeeccccccC
Confidence 588999944444444322212 234544452 56666555 56678888887776 4444422
Q ss_pred --CC-Ccccccee--ec-CCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccce
Q 039497 241 --PG-VHCFTPAA--FH-DGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPH 314 (642)
Q Consensus 241 --~~-~~~~~~~~--Sp-dG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~ 314 (642)
.+ .....+++ +| .|+..+|+....+ .+..|++... .+|+. -.. .. .
T Consensus 123 v~t~~~~pyGlcly~~~~~g~~yafV~~k~G----~~~q~~l~~~-----------~~g~~-~~~-----------lV-R 174 (355)
T 3amr_A 123 IATAINEVYGFTLYHSQKTGKYYAMVTGKEG----EFEQYELKAD-----------KNGYI-SGK-----------KV-R 174 (355)
T ss_dssp EECCCSSCCCEEEEECTTTCCEEEEEECSSS----EEEEEEEEEC-----------TTSCE-EEE-----------EE-E
T ss_pred cCCCCCCeeEEEEEecCCCCcEEEEEECCCC----eEEEEEEEeC-----------CCCcc-cce-----------EE-E
Confidence 11 34445566 66 4555566555443 6666666221 11110 000 00 0
Q ss_pred EeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECC--CCCe-eEEee------cCCceeeee--ecC
Q 039497 315 LEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD--GSKR-WTLIK------DRTAFYNSW--SPT 383 (642)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~--~~~~-~~l~~------~~~~~~~~~--spd 383 (642)
...+.. ........+...+|++..+ + ..||.++.+ ++.. +.+.. ...+..+++ .++
T Consensus 175 ~f~lgs----------q~EgcvvDd~~g~Lyv~eE-d--~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~ 241 (355)
T 3amr_A 175 AFKMNS----------QTEGMAADDEYGRLYIAEE-D--EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAAD 241 (355)
T ss_dssp EEECSS----------CEEEEEEETTTTEEEEEET-T--TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGG
T ss_pred EecCCC----------CcceEEEcCCCCeEEEecc-c--ceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCC
Confidence 001111 1123356666666666554 2 459999965 3222 22322 134566666 577
Q ss_pred CC-EEEEEEcCCCcccCCCeEEEEEEE
Q 039497 384 EK-HVIYTSTGPIFQSERATVQIARVS 409 (642)
Q Consensus 384 g~-~l~~~~~~~~~~~~~~~~~l~~~~ 409 (642)
|+ +|+.++. ++..+.+|+..
T Consensus 242 g~gyLivSsQ------G~~s~~Vydr~ 262 (355)
T 3amr_A 242 GKGYLMASSQ------GNSSYAIYDRQ 262 (355)
T ss_dssp GCEEEEEEEG------GGTEEEEEESS
T ss_pred CCEEEEEEcC------CCCEEEEEECC
Confidence 77 5666663 35677777653
No 326
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.31 E-value=2 Score=41.57 Aligned_cols=209 Identities=10% Similarity=0.023 Sum_probs=98.3
Q ss_pred eEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc
Q 039497 355 GIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK 432 (642)
Q Consensus 355 ~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 432 (642)
.++++|..+.+...+.. ..........-+++.+++..... ........++.++. . .. ..+.+..
T Consensus 79 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~~~yd~--~-----~~-----~W~~~~~ 144 (318)
T 2woz_A 79 YFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDL--QTEASLDSVLCYDP--V-----AA-----KWSEVKN 144 (318)
T ss_dssp EEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBT--TTCCEEEEEEEEET--T-----TT-----EEEEECC
T ss_pred cEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccC--CCCcccceEEEEeC--C-----CC-----CEeECCC
Confidence 38999998887666543 11111222222454444443210 01112234555555 2 12 4555543
Q ss_pred cCCCCccCcEECCCCCeEEEEeCCC---CceeEEEEECCCCccccceeeCCCCCCccc-ceeEecCCCEEEEEecCCCCC
Q 039497 433 EETGNNAFPSCSPDGKFLVFRSGRS---GHKNLFVLDAVNGEFNGDIRQLTDGPWIDT-MPSWSPKGDLIAFSSNRHNPD 508 (642)
Q Consensus 433 ~~~~~~~~~~~SpDg~~l~~~~~~~---g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~-~~~~spdG~~l~~~~~~~~~~ 508 (642)
.+.....+....-+++.+++..... ....++++|+.+.+. ..+...+..-. +....-+++.+++......
T Consensus 145 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-- 218 (318)
T 2woz_A 145 LPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW----KDLAPMKTPRSMFGVAIHKGKIVIAGGVTED-- 218 (318)
T ss_dssp CSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEE----EEECCCSSCCBSCEEEEETTEEEEEEEEETT--
T ss_pred CCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEE----EECCCCCCCcccceEEEECCEEEEEcCcCCC--
Confidence 3312223333344565444432111 134799999998875 55543322111 1222335655555544321
Q ss_pred CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcC
Q 039497 509 NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLD 588 (642)
Q Consensus 509 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 588 (642)
.....++++|+++.+.+.+...... .........+++.+++........ +.... ......++|.+|+.
T Consensus 219 -~~~~~~~~yd~~~~~W~~~~~~p~~--------r~~~~~~~~~~~i~v~GG~~~~~~-~~~~~--~~~~~~~v~~yd~~ 286 (318)
T 2woz_A 219 -GLSASVEAFDLKTNKWEVMTEFPQE--------RSSISLVSLAGSLYAIGGFAMIQL-ESKEF--APTEVNDIWKYEDD 286 (318)
T ss_dssp -EEEEEEEEEETTTCCEEECCCCSSC--------CBSCEEEEETTEEEEECCBCCBC-----CC--BCCBCCCEEEEETT
T ss_pred -CccceEEEEECCCCeEEECCCCCCc--------ccceEEEEECCEEEEECCeeccCC-CCcee--ccceeeeEEEEeCC
Confidence 1346799999999888877542211 122223334555444432211000 00000 00013489999998
Q ss_pred CCceeec
Q 039497 589 GSGLRRL 595 (642)
Q Consensus 589 ~~~~~~l 595 (642)
..+-+.+
T Consensus 287 ~~~W~~~ 293 (318)
T 2woz_A 287 KKEWAGM 293 (318)
T ss_dssp TTEEEEE
T ss_pred CCEehhh
Confidence 8876666
No 327
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=94.09 E-value=0.92 Score=46.70 Aligned_cols=147 Identities=12% Similarity=0.094 Sum_probs=72.2
Q ss_pred CCccCcEECCCCC-eEEEEeCCCCceeEEEEECCCCccccceeeCCC----C-----CCcccceeEecC---CCEEEEEe
Q 039497 436 GNNAFPSCSPDGK-FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD----G-----PWIDTMPSWSPK---GDLIAFSS 502 (642)
Q Consensus 436 ~~~~~~~~SpDg~-~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~----~-----~~~~~~~~~spd---G~~l~~~~ 502 (642)
.....++|.|||+ .|+++. +.| .|++++.++......+..+.. . ......++++|+ ..+||+..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~e-r~G--~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~y 90 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILE-KEG--YVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSY 90 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEE-TTT--EEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEe-CCc--eEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEE
Confidence 3456789999996 565554 334 788887653211001122221 1 223345788886 33455544
Q ss_pred cCCCC-----CCCCceeEEEEeCCCC--------ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCC
Q 039497 503 NRHNP-----DNVEAFSLYVIKPDGS--------GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEP 569 (642)
Q Consensus 503 ~~~~~-----~~~~~~~l~~~d~~~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~ 569 (642)
..... .......|.++.+..+ ..+.|....... .......+.|.|||+ ||++..+.+...++
T Consensus 91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~----~~H~g~~l~fgpDG~-LYv~~Gd~~~~~~~ 165 (463)
T 2wg3_C 91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELH----RKHLGGQLLFGPDGF-LYIILGDGMITLDD 165 (463)
T ss_dssp EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESS----SSSCEEEEEECTTSC-EEEEECCTTCCHHH
T ss_pred eCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCC----CcccCCcEeECCCCc-EEEEeCCCCCCCCc
Confidence 32110 0012357888877532 123333211000 001346799999995 77666554321000
Q ss_pred CC-CCCCCCCCCcEEEEEcCCC
Q 039497 570 VS-WPNQFQPYGDLYVVKLDGS 590 (642)
Q Consensus 570 ~~-~~~~~~~~~~l~~~~~~~~ 590 (642)
-. ....-...+.|++++.++.
T Consensus 166 ~~~~q~~~~~~GkIlRi~~dg~ 187 (463)
T 2wg3_C 166 MEEMDGLSDFTGSVLRLDVDTD 187 (463)
T ss_dssp HHHCTTCCSCTTEEEEEBCCCC
T ss_pred cccccCcCCCCeeEEEEECCCC
Confidence 00 0000113568999999884
No 328
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=93.30 E-value=4.9 Score=39.81 Aligned_cols=160 Identities=9% Similarity=0.083 Sum_probs=89.5
Q ss_pred CEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCC
Q 039497 342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNRE 421 (642)
Q Consensus 342 ~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 421 (642)
+..+|+.+ .+...|.++|+.+++.+++.. ..+.|| ....+.-. |
T Consensus 170 ~~~aYItD-~~~~gLIVydl~~~~swRv~~------~~~~pd-~~~~~~i~---------------------------G- 213 (381)
T 3q6k_A 170 ETFVYITN-FLRGALFIYDHKKQDSWNVTH------PTFKAE-RPTKFDYG---------------------------G- 213 (381)
T ss_dssp SEEEEEEE-TTTTEEEEEETTTTEEEEEEC------GGGSCC-SCEEEEET---------------------------T-
T ss_pred ccEEEEEc-CCCCcEEEEECCCCcEEEEcc------CCCccc-cCcceEEC---------------------------C-
Confidence 56788776 456799999999999888763 234565 32222221 1
Q ss_pred ccccceEEccccCCCCccCcEECCC----CCeEEEEeCCCCceeEEEEEC---CCCccccceeeCCCCC--CcccceeEe
Q 039497 422 EIPCDVKILTKEETGNNAFPSCSPD----GKFLVFRSGRSGHKNLFVLDA---VNGEFNGDIRQLTDGP--WIDTMPSWS 492 (642)
Q Consensus 422 ~~~~~~~~l~~~~~~~~~~~~~SpD----g~~l~~~~~~~g~~~l~~~d~---~~g~~~~~~~~l~~~~--~~~~~~~~s 492 (642)
....+. ..+..+++||+ +++|+|..... ..+|.+.. ........++.+-... ......+.+
T Consensus 214 ----~~~~~~----~Gi~gIaLsp~~~~~~~~LYf~plss--~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D 283 (381)
T 3q6k_A 214 ----KEYEFK----AGIFGITLGDRDSEGNRPAYYLAGSA--IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD 283 (381)
T ss_dssp ----EEEEEC----CCEEEEEECCCCTTSCCEEEEEESSC--SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred ----EEeEec----cCceEEEecCCcCCCCeEEEEEECCC--CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Confidence 111111 23556889998 89999988632 37888873 2221101123332221 111123554
Q ss_pred cCCCEEEEEecCCCCCCCCceeEEEEeCCC-----CceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEec
Q 039497 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDG-----SGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANL 562 (642)
Q Consensus 493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~ 562 (642)
+....|+|..... ..|..|+.++ +....+.....-. .+..+.+..||. |++.+++
T Consensus 284 ~~~G~ly~~~~~~-------~aI~~w~~~~~~~~~~n~~~l~~d~~l~-------~pd~~~i~~~g~-Lwv~sn~ 343 (381)
T 3q6k_A 284 PKTKVIFFAEANT-------KQVSCWNTQKMPLRMKNTDVVYTSSRFV-------FGTDISVDSKGG-LWFMSNG 343 (381)
T ss_dssp TTTCEEEEEESSS-------SEEEEEETTSCSBCGGGEEEEEECTTCC-------SEEEEEECTTSC-EEEEECS
T ss_pred CCCCeEEEEeccC-------CeEEEEeCCCCccccCceEEEEECCCcc-------ccCeEEECCCCe-EEEEECc
Confidence 3333577776544 3599999876 3445555433111 345666767774 7777654
No 329
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=93.11 E-value=3 Score=41.05 Aligned_cols=169 Identities=5% Similarity=-0.060 Sum_probs=72.9
Q ss_pred eeEEEEECCCCccccceeeCCCCCC--cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeC--CCCceEEeeecCCCC
Q 039497 460 KNLFVLDAVNGEFNGDIRQLTDGPW--IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKP--DGSGLRRIHVAGPEG 535 (642)
Q Consensus 460 ~~l~~~d~~~g~~~~~~~~l~~~~~--~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~--~~~~~~~l~~~~~~~ 535 (642)
..++++|+.+.+. +.+...+. ........-+++.+++...... ......++.+|+ .+...+.+......
T Consensus 168 ~~v~~yd~~~~~W----~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~--~~~~~~v~~~d~d~~~~~W~~~~~~~~~- 240 (357)
T 2uvk_A 168 KFLLSFDPSTQQW----SYAGESPWYGTAGAAVVNKGDKTWLINGEAKP--GLRTDAVFELDFTGNNLKWNKLAPVSSP- 240 (357)
T ss_dssp CEEEEEETTTTEE----EEEEECSSCCCBSCEEEEETTEEEEECCEEET--TEECCCEEEEECC---CEEEECCCSSTT-
T ss_pred ccEEEEeCCCCcE----EECCCCCCCCcccccEEEECCEEEEEeeecCC--CcccCceEEEEecCCCCcEEecCCCCCC-
Confidence 4899999998875 44433221 1112222234544444332111 012345888887 66666665432111
Q ss_pred CCCcccccccceEEcCCCCEEEEEEecCCcccC---CCCC--CCCCCCCCcEEEEEcCCCceeeccCCCC-CCCCcEEec
Q 039497 536 SGDVDRERINHVCFSADGEWLLFTANLGAVMAE---PVSW--PNQFQPYGDLYVVKLDGSGLRRLTWNGY-ENGTPAWHP 609 (642)
Q Consensus 536 ~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~---~~~~--~~~~~~~~~l~~~~~~~~~~~~lt~~~~-~~~~~~~s~ 609 (642)
+..........+++.+++.........+ .-.+ .........++.+|+....-+++..... .....+..-
T Consensus 241 -----~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 315 (357)
T 2uvk_A 241 -----DGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPW 315 (357)
T ss_dssp -----TCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEE
T ss_pred -----cccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEe
Confidence 1122222344566544444321100000 0000 0000011368899998877555543221 111334455
Q ss_pred CCceEEeec-CCCcc-cccceeeeecccceecc
Q 039497 610 GNQLDLGKL-RLEDD-IGDKLRGQFDEPLWISC 640 (642)
Q Consensus 610 dg~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~ 640 (642)
++++++... +..+. ..+.....++..+|+.+
T Consensus 316 ~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 316 NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 776665443 32222 24566677888887654
No 330
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.77 E-value=16 Score=39.68 Aligned_cols=207 Identities=10% Similarity=0.070 Sum_probs=99.8
Q ss_pred ceeEEEEECCCCCeeEEe-e-------c-CCceeeeeec-CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCc
Q 039497 353 NAGIKIAKSDGSKRWTLI-K-------D-RTAFYNSWSP-TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREE 422 (642)
Q Consensus 353 ~~~l~~~d~~~~~~~~l~-~-------~-~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 422 (642)
...++++|..+++...+. . . ......+..+ +++.+++....... ..-.. +|.++. . ..
T Consensus 411 ~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~-~~~~d--v~~yd~--~-----t~-- 478 (695)
T 2zwa_A 411 VNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPH-QGLSD--NWIFDM--K-----TR-- 478 (695)
T ss_dssp CCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTT-CBCCC--CEEEET--T-----TT--
T ss_pred cCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCC-Ccccc--EEEEeC--C-----CC--
Confidence 357999999988877766 2 1 1122333333 55544443321100 01123 444444 1 11
Q ss_pred cccceEEccccCCCCccCcEEC-CCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC------CCcccceeEecCC
Q 039497 423 IPCDVKILTKEETGNNAFPSCS-PDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG------PWIDTMPSWSPKG 495 (642)
Q Consensus 423 ~~~~~~~l~~~~~~~~~~~~~S-pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~------~~~~~~~~~spdG 495 (642)
..+.+...+.....+.+.. .+|+.++|....... .++++|+.+.+. ..+... ........+..+.
T Consensus 479 ---~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~-~v~~yd~~t~~W----~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 479 ---EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP-AMLLYNVTEEIF----KDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp ---EEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC-SEEEEETTTTEE----EECCCSSGGGGSCCBSCEEEEETTT
T ss_pred ---cEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC-CEEEEECCCCce----EEccCCCCCCCcccceeEEEEeCCC
Confidence 4555543332233333333 477666655433222 899999998885 555431 1111224455553
Q ss_pred CEEEEEecCCCCCCCCceeEEEEeCCCCc------eEEeeecCCCCCCCccccccc-ceEEcCCCCEEEEEEecCCcccC
Q 039497 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSG------LRRIHVAGPEGSGDVDRERIN-HVCFSADGEWLLFTANLGAVMAE 568 (642)
Q Consensus 496 ~~l~~~~~~~~~~~~~~~~l~~~d~~~~~------~~~l~~~~~~~~~~~~~~~~~-~~~~S~Dg~~l~~~~~~~~~~~~ 568 (642)
..|++.+............++++|+.+.. .+.+....... ... .++...|++.+++.......
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~-------R~~~~~~~~~~~~iyv~GG~~~~~--- 620 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQ-------RYGSQIKYITPRKLLIVGGTSPSG--- 620 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGC-------CBSCEEEEEETTEEEEECCBCSSC---
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCC-------cccceEEEeCCCEEEEECCccCCC---
Confidence 44555543321101134679999999888 56554411011 112 22222335544443322110
Q ss_pred CCCCCCCCCCCCcEEEEEcCCCceeec
Q 039497 569 PVSWPNQFQPYGDLYVVKLDGSGLRRL 595 (642)
Q Consensus 569 ~~~~~~~~~~~~~l~~~~~~~~~~~~l 595 (642)
.+.....++.+|+....-+.+
T Consensus 621 ------~~~~~~~v~~yd~~t~~W~~~ 641 (695)
T 2zwa_A 621 ------LFDRTNSIISLDPLSETLTSI 641 (695)
T ss_dssp ------CCCTTTSEEEEETTTTEEEEC
T ss_pred ------CCCCCCeEEEEECCCCeEEEe
Confidence 001234899999988765543
No 331
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=90.79 E-value=15 Score=36.98 Aligned_cols=243 Identities=9% Similarity=0.095 Sum_probs=127.4
Q ss_pred ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEE
Q 039497 196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD 275 (642)
Q Consensus 196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d 275 (642)
..+..| +.+.++...++..++..+|+..+. .+.+- ...+.+..+.|..+-|+.-. ...+.+||
T Consensus 30 ~TmESD-kyicVrE~~~~~~~vvIiDl~~~~-------~~~rr---pi~AdsAIMnP~~~iiALra------g~~lQiFn 92 (494)
T 1bpo_A 30 LTMESD-KFICIREKVGEQAQVVIIDMNDPS-------NPIRR---PISADSAIMNPASKVIALKA------GKTLQIFN 92 (494)
T ss_dssp EEEEET-TEEEEEECCTTCCEEEEEETTSTT-------SCEEE---ECCCSEEEECSSSSCEEEEE------TTEEEEEE
T ss_pred eeeecC-ceEEEEecCCCCCeEEEEECCCCC-------cceec---ccccceeeeCCCCcEEEEec------CCeEEEEc
Confidence 355555 555666434455589999998763 22221 11233455677777666632 34788888
Q ss_pred eecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCcee
Q 039497 276 LTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG 355 (642)
Q Consensus 276 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 355 (642)
+.+.. +|-...+... . .+=.|-. -+.|+++.. ..
T Consensus 93 le~K~--------------klks~~~~e~------V---------------------vfWkWis-~~~l~lVT~----ta 126 (494)
T 1bpo_A 93 IEMKS--------------KMKAHTMTDD------V---------------------TFWKWIS-LNTVALVTD----NA 126 (494)
T ss_dssp TTTTE--------------EEEEEECSSC------C---------------------CEEEEEE-TTEEEEECS----SE
T ss_pred hHHhh--------------hhcceecCCC------c---------------------eEEEecC-CCeEEEEcC----Ce
Confidence 83321 1111100000 0 1113322 245777654 67
Q ss_pred EEEEECCCC-CeeEEee------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceE
Q 039497 356 IKIAKSDGS-KRWTLIK------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVK 428 (642)
Q Consensus 356 l~~~d~~~~-~~~~l~~------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 428 (642)
+|.|++++. .+..+.. ..-+-...-++|.++++.+.-...-..-.+.++||.++. + ..+
T Consensus 127 VyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er--~------------~sQ 192 (494)
T 1bpo_A 127 VYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR--K------------VSQ 192 (494)
T ss_dssp EEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT--C------------CEE
T ss_pred eEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc--c------------ccc
Confidence 888888763 2333333 223556677899999987764211111246677777754 1 333
Q ss_pred EccccCCCCccCcEECCCC-----CeEEEEeCCCCceeEEEEECCCC---cc--ccceeeCCCCCCc-c---cceeEecC
Q 039497 429 ILTKEETGNNAFPSCSPDG-----KFLVFRSGRSGHKNLFVLDAVNG---EF--NGDIRQLTDGPWI-D---TMPSWSPK 494 (642)
Q Consensus 429 ~l~~~~~~~~~~~~~SpDg-----~~l~~~~~~~g~~~l~~~d~~~g---~~--~~~~~~l~~~~~~-~---~~~~~spd 494 (642)
.+..+. ... ..+-.+| +-+.|+........|+++++... .. .+....+.-.+.. . -....|+.
T Consensus 193 ~ieGha-a~F--~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~k 269 (494)
T 1bpo_A 193 PIEGHA-ASF--AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK 269 (494)
T ss_dssp EECCSE-EEE--EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETT
T ss_pred hheeee-eee--EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEeccc
Confidence 333322 211 2232333 34666665444468999998643 11 0112333222211 1 22367877
Q ss_pred CCEEEEEecCCCCCCCCceeEEEEeCCCCceE
Q 039497 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526 (642)
Q Consensus 495 G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 526 (642)
-..|+.....+- |+++|+.++..-
T Consensus 270 ygviyviTK~G~--------i~lyDleTgt~i 293 (494)
T 1bpo_A 270 HDVVFLITKYGY--------IHLYDLETGTCI 293 (494)
T ss_dssp TTEEEEEETTSE--------EEEEETTTCCEE
T ss_pred CCEEEEEecCce--------EEEEecccceee
Confidence 777777776654 999999988653
No 332
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=90.48 E-value=13 Score=35.82 Aligned_cols=243 Identities=9% Similarity=0.099 Sum_probs=125.6
Q ss_pred ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEE
Q 039497 196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD 275 (642)
Q Consensus 196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d 275 (642)
..+..| +.+.++...++..++..+|+..+. .+.+- ...+.+..+.|.-+-||.-. ...++++|
T Consensus 31 lTmESD-kyicVrE~~~~~~~VvIiDl~n~~-------~~~Rr---pi~AdsAIMnP~~~ViALra------g~~LQiFn 93 (365)
T 2xzh_A 31 LTMESD-KFICIREKVGEQAQVVIIDMNDPS-------NPIRR---PISADSAIMNPASKVIALKA------GKTLQIFN 93 (365)
T ss_dssp EEEEET-TEEEEEEEETTEEEEEEEETTSTT-------SCEEE---ECCCSEEEECSSSSEEEEEE------TTEEEEEE
T ss_pred eeeecC-ceEEEEecCCCCCEEEEEECCCCC-------Ccccc---ccccceeeeCCCccEEEEec------CCeEEEec
Confidence 455556 455555333444589999988763 22221 11233455678888777632 23788888
Q ss_pred eecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCcee
Q 039497 276 LTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG 355 (642)
Q Consensus 276 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 355 (642)
+.+.. +|-.... . +.+... .|-. -+.|+++.. ..
T Consensus 94 letK~--------------klks~~~-----------------~---e~VvfW-------kWis-~~~L~lVT~----ta 127 (365)
T 2xzh_A 94 IEMKS--------------KMKAHTM-----------------T---DDVTFW-------KWIS-LNTVALVTD----NA 127 (365)
T ss_dssp TTTTE--------------EEEEEEC-----------------S---SCEEEE-------EECS-SSEEEEEES----SE
T ss_pred hHHhh--------------hhcceec-----------------C---CccEEE-------EecC-CCeEEEEcC----Cc
Confidence 83321 0111100 0 011111 3432 245777664 67
Q ss_pred EEEEECCCC-CeeEEee------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceE
Q 039497 356 IKIAKSDGS-KRWTLIK------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVK 428 (642)
Q Consensus 356 l~~~d~~~~-~~~~l~~------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 428 (642)
+|.|++++. .++.+.. ..-+-...-++|.++++.+.-...-..-.+.++||.++. ...
T Consensus 128 VyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er---------------~~s 192 (365)
T 2xzh_A 128 VYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR---------------KVS 192 (365)
T ss_dssp EEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT---------------TEE
T ss_pred EEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc---------------ccc
Confidence 888888763 3333333 223456677899999988764211111235677777654 333
Q ss_pred EccccCCCCccCcEECCCC-----CeEEEEeCCCCceeEEEEECCCC---ccc--cceeeCCCCC-Ccc---cceeEecC
Q 039497 429 ILTKEETGNNAFPSCSPDG-----KFLVFRSGRSGHKNLFVLDAVNG---EFN--GDIRQLTDGP-WID---TMPSWSPK 494 (642)
Q Consensus 429 ~l~~~~~~~~~~~~~SpDg-----~~l~~~~~~~g~~~l~~~d~~~g---~~~--~~~~~l~~~~-~~~---~~~~~spd 494 (642)
+...+..... ..+-.+| +-++|+........|+++++... ..+ ++...+.-.+ ... -....|+.
T Consensus 193 Q~ieGhaa~F--~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~k 270 (365)
T 2xzh_A 193 QPIEGHAASF--AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK 270 (365)
T ss_dssp EEECCSEEEE--EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETT
T ss_pred ceeeeeeeee--EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEeccc
Confidence 3333220111 2233333 24566654333368999998543 110 1122222211 111 22366777
Q ss_pred CCEEEEEecCCCCCCCCceeEEEEeCCCCceE
Q 039497 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526 (642)
Q Consensus 495 G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 526 (642)
-..||.....+- |+++|+.++..-
T Consensus 271 ygviyviTK~G~--------ihlyDleTgt~i 294 (365)
T 2xzh_A 271 HDVVFLITKYGY--------IHLYDLETGTCI 294 (365)
T ss_dssp TTEEEEEETTSE--------EEEEETTTCCEE
T ss_pred CCEEEEEeCCcE--------EEEEEcccCcEE
Confidence 677777776654 999999988653
No 333
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=89.47 E-value=8.9 Score=40.48 Aligned_cols=70 Identities=14% Similarity=0.205 Sum_probs=47.3
Q ss_pred ceeEecCCCEEEEEecCCCC----CCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 488 MPSWSPKGDLIAFSSNRHNP----DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 488 ~~~~spdG~~l~~~~~~~~~----~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
.+.|+|+|+.++........ .....+.++.++...++++++....... .+.-+.|+||+++|++...-.
T Consensus 480 NL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~ga-------E~TG~~fspDg~tlfvniQHP 552 (592)
T 3zwu_A 480 GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGC-------EVTGISFSPDQKTLFVGIQHP 552 (592)
T ss_dssp EEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTC-------EEEEEEECTTSSEEEEEEEST
T ss_pred ceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCc-------cCcCeeECCCCCEEEEEEECC
Confidence 45899999844443322110 0124567899999999998887643333 678899999999998876544
Q ss_pred C
Q 039497 564 A 564 (642)
Q Consensus 564 ~ 564 (642)
+
T Consensus 553 G 553 (592)
T 3zwu_A 553 G 553 (592)
T ss_dssp T
T ss_pred C
Confidence 3
No 334
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=88.58 E-value=17 Score=34.65 Aligned_cols=226 Identities=8% Similarity=-0.014 Sum_probs=107.5
Q ss_pred eeEEEEECCCCCeeEEeec---CCceeeeeecCCCEEEEEEcCCC--cccCCCeEEEEEEEeecCCCCCCCCCccccceE
Q 039497 354 AGIKIAKSDGSKRWTLIKD---RTAFYNSWSPTEKHVIYTSTGPI--FQSERATVQIARVSFQLDPSDDNNREEIPCDVK 428 (642)
Q Consensus 354 ~~l~~~d~~~~~~~~l~~~---~~~~~~~~spdg~~l~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 428 (642)
..++.+|..+.+....... ....+.....+++.+++...... .........++.++. . .+ ...
T Consensus 24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~--~-----~~-----~W~ 91 (318)
T 2woz_A 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDN--V-----SS-----EWV 91 (318)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEET--T-----TT-----EEE
T ss_pred cceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeC--C-----CC-----cEE
Confidence 3578889888775553221 12223333445554444431100 000001112555554 2 12 555
Q ss_pred EccccCCCCccCcEECCCCCeEEEEeCC----CCceeEEEEECCCCccccceeeCCCCCCcc-cceeEecCCCEEEEEec
Q 039497 429 ILTKEETGNNAFPSCSPDGKFLVFRSGR----SGHKNLFVLDAVNGEFNGDIRQLTDGPWID-TMPSWSPKGDLIAFSSN 503 (642)
Q Consensus 429 ~l~~~~~~~~~~~~~SpDg~~l~~~~~~----~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~-~~~~~spdG~~l~~~~~ 503 (642)
.+...+.....+....-+++.+++.... .....++++|+.+.+. +.+...+... .+....-+++.+++...
T Consensus 92 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 167 (318)
T 2woz_A 92 GLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKW----SEVKNLPIKVYGHNVISHNGMIYCLGGK 167 (318)
T ss_dssp ECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEE----EEECCCSSCEESCEEEEETTEEEEECCE
T ss_pred ECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCE----eECCCCCCcccccEEEEECCEEEEEcCC
Confidence 5544331222222333355544444321 1124799999998885 5554433221 12233345654444432
Q ss_pred CCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEE
Q 039497 504 RHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLY 583 (642)
Q Consensus 504 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 583 (642)
... ......++++|+.+.+.+.+...... ........-+++.+++....... ....++
T Consensus 168 ~~~--~~~~~~~~~yd~~~~~W~~~~~~p~~--------r~~~~~~~~~~~iyv~GG~~~~~------------~~~~~~ 225 (318)
T 2woz_A 168 TDD--KKCTNRVFIYNPKKGDWKDLAPMKTP--------RSMFGVAIHKGKIVIAGGVTEDG------------LSASVE 225 (318)
T ss_dssp ESS--SCBCCCEEEEETTTTEEEEECCCSSC--------CBSCEEEEETTEEEEEEEEETTE------------EEEEEE
T ss_pred CCC--CCccceEEEEcCCCCEEEECCCCCCC--------cccceEEEECCEEEEEcCcCCCC------------ccceEE
Confidence 211 11345699999999888877532211 11222233466555554432211 123799
Q ss_pred EEEcCCCceeeccCCCCCC-CCcEEecCCceEEee
Q 039497 584 VVKLDGSGLRRLTWNGYEN-GTPAWHPGNQLDLGK 617 (642)
Q Consensus 584 ~~~~~~~~~~~lt~~~~~~-~~~~~s~dg~~~~~~ 617 (642)
.+|+.+..-+.+......- ......-++++++..
T Consensus 226 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G 260 (318)
T 2woz_A 226 AFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIG 260 (318)
T ss_dssp EEETTTCCEEECCCCSSCCBSCEEEEETTEEEEEC
T ss_pred EEECCCCeEEECCCCCCcccceEEEEECCEEEEEC
Confidence 9999988877765432211 122334466666543
No 335
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=88.45 E-value=22 Score=35.63 Aligned_cols=112 Identities=18% Similarity=0.177 Sum_probs=63.5
Q ss_pred CccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccc-c--------c--eeeCCC----CCCcccceeEecC---CCEE
Q 039497 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN-G--------D--IRQLTD----GPWIDTMPSWSPK---GDLI 498 (642)
Q Consensus 437 ~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~-~--------~--~~~l~~----~~~~~~~~~~spd---G~~l 498 (642)
.+..+..||+|++|+.... .+|.++.+-.+... . + ...+.. ....+..+.|+|- |..|
T Consensus 67 ~i~qlvlSpsG~lLAl~g~----~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~L 142 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFND----NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCI 142 (452)
T ss_dssp TTCEEEECTTSSEEEEECS----SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEE
T ss_pred ceeEEEECCCCCEEEEecC----CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeE
Confidence 4567899999999998853 46777776533210 0 0 011111 1234667789884 4567
Q ss_pred EEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCC--cccccccceEEcCCCCEEEEEE
Q 039497 499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGD--VDRERINHVCFSADGEWLLFTA 560 (642)
Q Consensus 499 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~S~Dg~~l~~~~ 560 (642)
+....++. |.+||+.....++.......+... ..-..+.+++|+.+|=+||...
T Consensus 143 VVLtsD~~--------Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~ 198 (452)
T 3pbp_A 143 VVLKEDDT--------ITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLN 198 (452)
T ss_dssp EEEETTSC--------EEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred EEEecCCE--------EEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEe
Confidence 77776654 999999753322221111000000 0002456889999988888765
No 336
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=86.85 E-value=7.7 Score=40.47 Aligned_cols=70 Identities=13% Similarity=0.192 Sum_probs=48.2
Q ss_pred cceeEecCCCEEEEEecCCCC-----CCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEe
Q 039497 487 TMPSWSPKGDLIAFSSNRHNP-----DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN 561 (642)
Q Consensus 487 ~~~~~spdG~~l~~~~~~~~~-----~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~ 561 (642)
..+.|+++|. |+|..+.... .......+|+++..+++++++....... .+.-++||||+++|++...
T Consensus 479 DnL~fd~~G~-LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~a-------EpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 479 DGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGC-------EVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp EEEEECTTCC-EEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTC-------EEEEEEECTTSSEEEEEEE
T ss_pred CceEECCCCC-EEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCc-------cccCCEECCCCCEEEEEEe
Confidence 4568999997 6775443210 0113458999999889988876422222 4678999999999998876
Q ss_pred cCC
Q 039497 562 LGA 564 (642)
Q Consensus 562 ~~~ 564 (642)
..+
T Consensus 551 HPG 553 (592)
T 4a9v_A 551 HPG 553 (592)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 337
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=86.83 E-value=34 Score=37.07 Aligned_cols=150 Identities=7% Similarity=0.024 Sum_probs=77.0
Q ss_pred CCCeEEEEeCCCC---ceeEEEEECCCCccccceeeCCCCCCccc-ceeEe-cCCCEEEEEecCCCCCCCCceeEEEEeC
Q 039497 446 DGKFLVFRSGRSG---HKNLFVLDAVNGEFNGDIRQLTDGPWIDT-MPSWS-PKGDLIAFSSNRHNPDNVEAFSLYVIKP 520 (642)
Q Consensus 446 Dg~~l~~~~~~~g---~~~l~~~d~~~g~~~~~~~~l~~~~~~~~-~~~~s-pdG~~l~~~~~~~~~~~~~~~~l~~~d~ 520 (642)
+|+.+++...... ...+|++|+.+.+. +.+...+..-. +.+.. .+|+.+++.+.... . .++++|+
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W----~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~----~--~v~~yd~ 520 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREW----SMIKSLSHTRFRHSACSLPDGNVLILGGVTEG----P--AMLLYNV 520 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEE----EECCCCSBCCBSCEEEECTTSCEEEECCBCSS----C--SEEEEET
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcE----EECCCCCCCcccceEEEEcCCEEEEECCCCCC----C--CEEEEEC
Confidence 6654444332221 24799999998875 66654432211 12222 47776666544332 2 7999999
Q ss_pred CCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc------eee
Q 039497 521 DGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG------LRR 594 (642)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~ 594 (642)
.+...+.+...+. .+..+.....+.+..+...||+........ -.....+|.||+.... -+.
T Consensus 521 ~t~~W~~~~~~g~---~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~---------~~~~~~v~~yd~~~~~w~~~~~W~~ 588 (695)
T 2zwa_A 521 TEEIFKDVTPKDE---FFQNSLVSAGLEFDPVSKQGIILGGGFMDQ---------TTVSDKAIIFKYDAENATEPITVIK 588 (695)
T ss_dssp TTTEEEECCCSSG---GGGSCCBSCEEEEETTTTEEEEECCBCTTS---------SCBCCEEEEEEECTTCSSCCEEEEE
T ss_pred CCCceEEccCCCC---CCCcccceeEEEEeCCCCEEEEECCcCCCC---------CeeeCcEEEEEccCCccccceEEEE
Confidence 9988887754210 111122233355566634555544321100 0013489999998876 444
Q ss_pred ccC---CCCCCCCcEEecCCceEEee
Q 039497 595 LTW---NGYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 595 lt~---~~~~~~~~~~s~dg~~~~~~ 617 (642)
+.. ............++++++..
T Consensus 589 ~~~~p~~~R~~~~~~~~~~~~iyv~G 614 (695)
T 2zwa_A 589 KLQHPLFQRYGSQIKYITPRKLLIVG 614 (695)
T ss_dssp EEECGGGCCBSCEEEEEETTEEEEEC
T ss_pred cCCCCCCCcccceEEEeCCCEEEEEC
Confidence 432 11122233444446666543
No 338
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=86.63 E-value=6.9 Score=38.32 Aligned_cols=65 Identities=8% Similarity=0.032 Sum_probs=36.5
Q ss_pred eeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce
Q 039497 513 FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL 592 (642)
Q Consensus 513 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 592 (642)
..++++|+++.+.+.+...... .....+...+++.+++........ ...+|+++++++++.
T Consensus 285 ~~~~~yd~~~~~W~~~~~~p~~--------r~~~~~~~~~~~i~v~GG~~~~~~-----------~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 285 YSTDIHLWHNGKWDKSGELSQG--------RAYGVSLPWNNSLLIIGGETAGGK-----------AVTDSVLITVKDNKV 345 (357)
T ss_dssp ECCEEEECC---CEEEEECSSC--------CBSSEEEEETTEEEEEEEECGGGC-----------EEEEEEEEEC-CCSC
T ss_pred eeEEEEecCCCceeeCCCCCCC--------cccceeEEeCCEEEEEeeeCCCCC-----------EeeeEEEEEEcCcEe
Confidence 5689999999888887643221 222344456777666665433210 123899999998876
Q ss_pred eecc
Q 039497 593 RRLT 596 (642)
Q Consensus 593 ~~lt 596 (642)
..+.
T Consensus 346 ~~~~ 349 (357)
T 2uvk_A 346 TVQN 349 (357)
T ss_dssp EEEC
T ss_pred Eeee
Confidence 5544
No 339
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=85.74 E-value=26 Score=33.70 Aligned_cols=161 Identities=12% Similarity=0.086 Sum_probs=76.7
Q ss_pred eEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497 355 GIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT 431 (642)
Q Consensus 355 ~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 431 (642)
.|++ ..++++...... ...+..+.++|+++.+++... +. ++.... . ++. ..+.+.
T Consensus 143 ~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------G~--~~~S~d--~-----gG~----tW~~~~ 200 (327)
T 2xbg_A 143 AIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSR--------GS--FYSTWE--P-----GQT----AWEPHN 200 (327)
T ss_dssp CEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETT--------SS--EEEEEC--T-----TCS----SCEEEE
T ss_pred cEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECC--------Cc--EEEEeC--C-----CCC----ceeECC
Confidence 4554 345554333322 345667888898876655432 22 333222 1 121 333333
Q ss_pred ccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC----CCcccceeEecCCCEEEEEecCCCC
Q 039497 432 KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG----PWIDTMPSWSPKGDLIAFSSNRHNP 507 (642)
Q Consensus 432 ~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~----~~~~~~~~~spdG~~l~~~~~~~~~ 507 (642)
.........+.++++|+.++.. . .| .+++...+.|+. -..+... ......+.+.++++.++. ...+.
T Consensus 201 ~~~~~~~~~~~~~~~g~~~~~~-~-~G--~~~~s~~D~G~t---W~~~~~~~~~~~~~~~~v~~~~~~~~~~~-g~~g~- 271 (327)
T 2xbg_A 201 RTTSRRLHNMGFTPDGRLWMIV-N-GG--KIAFSDPDNSEN---WGELLSPLRRNSVGFLDLAYRTPNEVWLA-GGAGA- 271 (327)
T ss_dssp CCSSSCEEEEEECTTSCEEEEE-T-TT--EEEEEETTEEEE---ECCCBCTTSSCCSCEEEEEESSSSCEEEE-ESTTC-
T ss_pred CCCCCccceeEECCCCCEEEEe-C-Cc--eEEEecCCCCCe---eEeccCCcccCCcceEEEEecCCCEEEEE-eCCCe-
Confidence 2222445567788998655433 2 23 466654443442 2333211 123455678888775444 33332
Q ss_pred CCCCceeEEEEeCCCC-ceEEeeec-CCCCCCCcccccccceEEcCCCCEEEEEEec
Q 039497 508 DNVEAFSLYVIKPDGS-GLRRIHVA-GPEGSGDVDRERINHVCFSADGEWLLFTANL 562 (642)
Q Consensus 508 ~~~~~~~l~~~d~~~~-~~~~l~~~-~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~ 562 (642)
|++ ..+++ ..+.+... .... .+..+.|.++++ +++...+
T Consensus 272 -------i~~-S~DgG~tW~~~~~~~~~~~-------~~~~v~~~~~~~-~~~~G~~ 312 (327)
T 2xbg_A 272 -------LLC-SQDGGQTWQQDVDVKKVPS-------NFYKILFFSPDQ-GFILGQK 312 (327)
T ss_dssp -------EEE-ESSTTSSCEECGGGTTSSS-------CCCEEEEEETTE-EEEECST
T ss_pred -------EEE-eCCCCcccEEcCccCCCCC-------CeEEEEEECCCc-eEEEcCC
Confidence 654 44444 44544421 1112 356677875554 4444443
No 340
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=85.02 E-value=67 Score=37.75 Aligned_cols=243 Identities=8% Similarity=0.083 Sum_probs=121.3
Q ss_pred eEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEe
Q 039497 197 TWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL 276 (642)
Q Consensus 197 ~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~ 276 (642)
++..| +.+.++...++..+|..+|+..+. . ++.....+-+..+.|..+-|+.-. ...+.+|++
T Consensus 31 T~eSD-kyicvre~~~~~~~vvIidl~~~~-------~---~~rrpi~AdsAIMnP~~~iiALra------g~~lQiFnl 93 (1630)
T 1xi4_A 31 TMESD-KFICIREKVGEQAQVVIIDMNDPS-------N---PIRRPISADSAIMNPASKVIALKA------GKTLQIFNI 93 (1630)
T ss_pred eeecC-ceEEEEecCCCCceEEEEECCCCC-------C---cccccccchhhccCCCcceEEEec------CCeEEEeeh
Confidence 44344 455555333444589999988763 2 222233344555677777666621 348888888
Q ss_pred ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeE
Q 039497 277 TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGI 356 (642)
Q Consensus 277 ~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l 356 (642)
.+...... ..+. ..+..+ .|-.+ +.|+++.. ..|
T Consensus 94 ~~k~klks-------------------------------~~~~---e~VvfW-------kWis~-~~l~lVT~----~aV 127 (1630)
T 1xi4_A 94 EMKSKMKA-------------------------------HTMT---DDVTFW-------KWISL-NTVALVTD----NAV 127 (1630)
T ss_pred HHhhhhcc-------------------------------cccC---CCceEE-------EecCC-CeeEEEcC----CeE
Confidence 43221100 0000 001111 33222 34666553 577
Q ss_pred EEEECCCCC-eeEEee------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE
Q 039497 357 KIAKSDGSK-RWTLIK------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI 429 (642)
Q Consensus 357 ~~~d~~~~~-~~~l~~------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 429 (642)
|.|++++.. ++.+.. +.-+....-+++.++++.+.-...-..-.+.+++|.++. . ..+.
T Consensus 128 yHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er--~------------~sQ~ 193 (1630)
T 1xi4_A 128 YHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR--K------------VSQP 193 (1630)
T ss_pred EEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc--c------------cchh
Confidence 888876532 111111 233556677899999988765322223357888888866 1 2233
Q ss_pred ccccCCCCccCc---EECCCCCeEEEEeCCCCceeEEEEECCCC---c--cccceeeCCCCCC-cc---cceeEecCCCE
Q 039497 430 LTKEETGNNAFP---SCSPDGKFLVFRSGRSGHKNLFVLDAVNG---E--FNGDIRQLTDGPW-ID---TMPSWSPKGDL 497 (642)
Q Consensus 430 l~~~~~~~~~~~---~~SpDg~~l~~~~~~~g~~~l~~~d~~~g---~--~~~~~~~l~~~~~-~~---~~~~~spdG~~ 497 (642)
+..+. .....+ ...+..+-+.|+........|+++++... . ..+....+.-.+. .. .....|+.-..
T Consensus 194 iegha-~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~ 272 (1630)
T 1xi4_A 194 IEGHA-ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV 272 (1630)
T ss_pred hhHhH-hhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCE
Confidence 33222 111111 11223345566654333368999998543 1 1011122221111 11 12355666666
Q ss_pred EEEEecCCCCCCCCceeEEEEeCCCCce
Q 039497 498 IAFSSNRHNPDNVEAFSLYVIKPDGSGL 525 (642)
Q Consensus 498 l~~~~~~~~~~~~~~~~l~~~d~~~~~~ 525 (642)
|+.....+- |+++|+.++..
T Consensus 273 iy~itk~G~--------~~~~d~~t~~~ 292 (1630)
T 1xi4_A 273 VFLITKYGY--------IHLYDLETGTC 292 (1630)
T ss_pred EEEEecCce--------EEEEecccchh
Confidence 666665553 89999988754
No 341
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=83.99 E-value=35 Score=33.68 Aligned_cols=108 Identities=4% Similarity=-0.075 Sum_probs=61.2
Q ss_pred ccceeEecC----CCEEEEEecCCCCCCCCceeEEEEeC---CC----CceEEeeecCCCCCCCcccccccceEEcCCCC
Q 039497 486 DTMPSWSPK----GDLIAFSSNRHNPDNVEAFSLYVIKP---DG----SGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554 (642)
Q Consensus 486 ~~~~~~spd----G~~l~~~~~~~~~~~~~~~~l~~~d~---~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~ 554 (642)
+..++.||+ +++|||...... ++|.+.. .. ...+.+-..+... .....+..+...
T Consensus 222 i~gIaLsp~~~~~~~~LYf~plss~-------~ly~V~T~~L~~~~~~~~v~~~G~kg~~s-------~~~~~~~D~~~G 287 (381)
T 3q6k_A 222 IFGITLGDRDSEGNRPAYYLAGSAI-------KVYSVNTKELKQKGGKLNPELLGNRGKYN-------DAIALAYDPKTK 287 (381)
T ss_dssp EEEEEECCCCTTSCCEEEEEESSCS-------EEEEEEHHHHSSTTCCCCCEEEEECCTTC-------CEEEEEECTTTC
T ss_pred ceEEEecCCcCCCCeEEEEEECCCC-------cEEEEEHHHhhCcchhhceEEeeecCCCC-------CcceEEEeCCCC
Confidence 456788998 899999987653 4787762 22 2233333322111 112345543334
Q ss_pred EEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC-----CceeeccCCCC--CCCCcEEecCCceEEeecCCCcc
Q 039497 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG-----SGLRRLTWNGY--ENGTPAWHPGNQLDLGKLRLEDD 623 (642)
Q Consensus 555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~lt~~~~--~~~~~~~s~dg~~~~~~~~~~~~ 623 (642)
.|+|+.-.. ..|..|+.++ +....|..... +..++.+.++|.+++.+-++...
T Consensus 288 ~ly~~~~~~----------------~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn~l~~~ 347 (381)
T 3q6k_A 288 VIFFAEANT----------------KQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSNGFPPI 347 (381)
T ss_dssp EEEEEESSS----------------SEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEECSCCSS
T ss_pred eEEEEeccC----------------CeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEECcchHh
Confidence 577776443 2899999887 23455554442 22455666788777665556543
No 342
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=83.77 E-value=4.9 Score=36.29 Aligned_cols=100 Identities=20% Similarity=0.328 Sum_probs=55.7
Q ss_pred CccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccc---cceeeCCCCCCc-ccceeEecCCCEEEEEecCCCCCCCCc
Q 039497 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN---GDIRQLTDGPWI-DTMPSWSPKGDLIAFSSNRHNPDNVEA 512 (642)
Q Consensus 437 ~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~---~~~~~l~~~~~~-~~~~~~spdG~~l~~~~~~~~~~~~~~ 512 (642)
....++|+|||...+. + +| .||..+..+++.. ...+.|-...+. -..+.|.|+|...+. ++ +
T Consensus 42 ~~~~laf~P~G~LYaV-~--~G--~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~d-G------- 107 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-L--ND--KIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SK-D------- 107 (236)
T ss_dssp TCSEEEECTTSCEEEE-E--TT--EEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ET-T-------
T ss_pred cceeEEECCCccEEEE-e--CC--eEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CC-C-------
Confidence 4567999999974433 2 23 7999998653210 001334332221 245688999975444 33 3
Q ss_pred eeEEEEeCCCCc-------eEEeeecCCCCCCCcccccccceEEcCCCCEEEEE
Q 039497 513 FSLYVIKPDGSG-------LRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559 (642)
Q Consensus 513 ~~l~~~d~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~ 559 (642)
.||+++.-+.. ...|-..+.. .+..+.|.|+|...++.
T Consensus 108 -~iyr~~pP~~~~~~Wl~~a~~vg~~gw~--------~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 108 -KLYKASPPQSDTDNWIARATEVGSGGWS--------GFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp -EEEEESCCCSTTCCHHHHSEEEECSSGG--------GEEEEEECTTSCEEEEE
T ss_pred -EEEEeCCCcCCCCceeccccEeccCCCC--------ceEEEEECCCceEEEEe
Confidence 28988863211 1233322222 35778999999744433
No 343
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=81.07 E-value=46 Score=33.95 Aligned_cols=38 Identities=11% Similarity=-0.039 Sum_probs=22.9
Q ss_pred cccceeEecCCCEEEEEecCCCC----------CCCCceeEEEEeCCCC
Q 039497 485 IDTMPSWSPKGDLIAFSSNRHNP----------DNVEAFSLYVIKPDGS 523 (642)
Q Consensus 485 ~~~~~~~spdG~~l~~~~~~~~~----------~~~~~~~l~~~d~~~~ 523 (642)
....+.|.|||+ ||++..+... .....-.|++++++++
T Consensus 140 ~g~~l~fgpDG~-LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~ 187 (463)
T 2wg3_C 140 LGGQLLFGPDGF-LYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTD 187 (463)
T ss_dssp CEEEEEECTTSC-EEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCC
T ss_pred cCCcEeECCCCc-EEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCC
Confidence 345679999996 5555443321 0112345889998874
No 344
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=80.47 E-value=5.5 Score=35.97 Aligned_cols=96 Identities=17% Similarity=0.200 Sum_probs=57.0
Q ss_pred cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC-------CceEEeeecCCCCCCCcccccccceEEcCCCCEEE
Q 039497 485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG-------SGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL 557 (642)
Q Consensus 485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~ 557 (642)
....++|+|||...+. ..+ .||..+..+ +..++|-..+.. .+..+.|.++|.. |
T Consensus 42 ~~~~laf~P~G~LYaV--~~G--------~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~--------~F~a~~fD~~G~L-Y 102 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LND--------KIYKGTPPTHDNDNWMGRAKKIGNGGWN--------QFQFLFFDPNGYL-Y 102 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETT--------EEEEESCCCSTTCCHHHHCEEEECSCGG--------GCSEEEECTTSCE-E
T ss_pred cceeEEECCCccEEEE--eCC--------eEEEECCCCCCcccccccccEecccccc--------cceEEEECCCCCE-E
Confidence 4457899999984444 333 299999865 333455433332 2567889999974 4
Q ss_pred EEEecCCcccCCCCCCCCCCCCCcEEEEEcCC--Cc-----eeeccCCCC-CCCCcEEecCCceEEee
Q 039497 558 FTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG--SG-----LRRLTWNGY-ENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~-----~~~lt~~~~-~~~~~~~s~dg~~~~~~ 617 (642)
.. .++ .||+++... +. -+.|-..++ ....+.|.|+|.+++..
T Consensus 103 av-~dG-----------------~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 103 AV-SKD-----------------KLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp EE-ETT-----------------EEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred Ee-CCC-----------------EEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence 44 333 899997522 21 122222222 23567889999877443
No 345
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=75.42 E-value=59 Score=31.13 Aligned_cols=152 Identities=14% Similarity=0.088 Sum_probs=75.3
Q ss_pred ceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccceeEecCCCEEEEEecC
Q 039497 426 DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPSWSPKGDLIAFSSNR 504 (642)
Q Consensus 426 ~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~~~~~ 504 (642)
..+.+..........+.++|+++.+++... ..||+-.-..|+. -+.+.. .......+.++++|+.+ .....
T Consensus 153 tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~----G~~~~S~d~gG~t---W~~~~~~~~~~~~~~~~~~~g~~~-~~~~~ 224 (327)
T 2xbg_A 153 NWQALVQEAIGVMRNLNRSPSGEYVAVSSR----GSFYSTWEPGQTA---WEPHNRTTSRRLHNMGFTPDGRLW-MIVNG 224 (327)
T ss_dssp SEEEEECSCCCCEEEEEECTTSCEEEEETT----SSEEEEECTTCSS---CEEEECCSSSCEEEEEECTTSCEE-EEETT
T ss_pred CCEEeecCCCcceEEEEEcCCCcEEEEECC----CcEEEEeCCCCCc---eeECCCCCCCccceeEECCCCCEE-EEeCC
Confidence 444443332234556788999887665432 2577655332432 233321 22345566788998754 44433
Q ss_pred CCCCCCCceeEEEEeCCCC-ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEE
Q 039497 505 HNPDNVEAFSLYVIKPDGS-GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLY 583 (642)
Q Consensus 505 ~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 583 (642)
+ .|++.+.+++ ..+.+....... ...+..+.+.++++.++ ....+ .|+
T Consensus 225 G--------~~~~s~~D~G~tW~~~~~~~~~~-----~~~~~~v~~~~~~~~~~-~g~~g-----------------~i~ 273 (327)
T 2xbg_A 225 G--------KIAFSDPDNSENWGELLSPLRRN-----SVGFLDLAYRTPNEVWL-AGGAG-----------------ALL 273 (327)
T ss_dssp T--------EEEEEETTEEEEECCCBCTTSSC-----CSCEEEEEESSSSCEEE-EESTT-----------------CEE
T ss_pred c--------eEEEecCCCCCeeEeccCCcccC-----CcceEEEEecCCCEEEE-EeCCC-----------------eEE
Confidence 3 1565543422 222222110000 00245677888776444 33322 565
Q ss_pred EEEcCCCc-eeeccCC---CCCCCCcEEecCCceEEee
Q 039497 584 VVKLDGSG-LRRLTWN---GYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 584 ~~~~~~~~-~~~lt~~---~~~~~~~~~s~dg~~~~~~ 617 (642)
. ..++++ -+++... ......+.|.+++++++..
T Consensus 274 ~-S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G 310 (327)
T 2xbg_A 274 C-SQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILG 310 (327)
T ss_dssp E-ESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEEC
T ss_pred E-eCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEc
Confidence 4 455544 4444421 2345678888777766543
No 346
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=74.83 E-value=1.2e+02 Score=35.70 Aligned_cols=208 Identities=9% Similarity=0.068 Sum_probs=104.7
Q ss_pred eCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEE
Q 039497 330 LNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARV 408 (642)
Q Consensus 330 ~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~ 408 (642)
......-.+|..+-|++-. ...|.++|++++....-.. ...+..=.|.. .+.|++++ ...+.-|.+
T Consensus 66 i~AdsAIMnP~~~iiALra----g~~lQiFnl~~k~klks~~~~e~VvfWkWis-~~~l~lVT--------~~aVyHW~~ 132 (1630)
T 1xi4_A 66 ISADSAIMNPASKVIALKA----GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS-LNTVALVT--------DNAVYHWSM 132 (1630)
T ss_pred ccchhhccCCCcceEEEec----CCeEEEeehHHhhhhcccccCCCceEEEecC-CCeeEEEc--------CCeEEEecc
Confidence 3344556788888787743 4678888887765322222 34444445653 35677776 567788888
Q ss_pred EeecCCCCCCCCCccccceEEccccC----CCCccCcEECCCCCeEEEEeCCC------CceeEEEEECCCCccccceee
Q 039497 409 SFQLDPSDDNNREEIPCDVKILTKEE----TGNNAFPSCSPDGKFLVFRSGRS------GHKNLFVLDAVNGEFNGDIRQ 478 (642)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~SpDg~~l~~~~~~~------g~~~l~~~d~~~g~~~~~~~~ 478 (642)
.. + + .+..+..-. ...+-+...++|.+|++...-.. |..+|| ..+.+. .+.
T Consensus 133 ~~--~-----s------~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLy--S~er~~----sQ~ 193 (1630)
T 1xi4_A 133 EG--E-----S------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY--SVDRKV----SQP 193 (1630)
T ss_pred CC--C-----C------ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeee--eccccc----chh
Confidence 43 1 1 222222111 12344567899999988765321 333444 443333 133
Q ss_pred CCCCCCcccce---eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC--ceEEeeecCCCCCCCcc--cccccceEEcC
Q 039497 479 LTDGPWIDTMP---SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS--GLRRIHVAGPEGSGDVD--RERINHVCFSA 551 (642)
Q Consensus 479 l~~~~~~~~~~---~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~--~~~~~~~~~S~ 551 (642)
|..+....... ...+..+.+.|...... ...|.++++... ...........--.+.+ .--+..+..|+
T Consensus 194 iegha~~F~~~~~~~~~~~~~l~~f~~~~~~-----g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~ 268 (1630)
T 1xi4_A 194 IEGHAASFAQFKMEGNAEESTLFCFAVRGQA-----GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE 268 (1630)
T ss_pred hhHhHhhhheeccCCCCCCceEEEEEEecCC-----CceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc
Confidence 33332211111 12333445566655432 245888887542 00011100000000000 00223456677
Q ss_pred CCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc
Q 039497 552 DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG 591 (642)
Q Consensus 552 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 591 (642)
.-..++..+..| -|+++|+.++.
T Consensus 269 k~g~iy~itk~G-----------------~~~~~d~~t~~ 291 (1630)
T 1xi4_A 269 KHDVVFLITKYG-----------------YIHLYDLETGT 291 (1630)
T ss_pred ccCEEEEEecCc-----------------eEEEEecccch
Confidence 777666666543 79999998875
No 347
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=68.84 E-value=1.1e+02 Score=31.82 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=44.9
Q ss_pred CeEEEEeCCCCceeEEEEECCCCccccceeeCCC-----CCCccccee--EecCCCEEEEEecCCCCCCCCceeEEEEeC
Q 039497 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-----GPWIDTMPS--WSPKGDLIAFSSNRHNPDNVEAFSLYVIKP 520 (642)
Q Consensus 448 ~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-----~~~~~~~~~--~spdG~~l~~~~~~~~~~~~~~~~l~~~d~ 520 (642)
+.+++...+.|...+|.+|+.+-..++.+-.++. .......|. --.+|+++++....-.. ......||++|+
T Consensus 152 rtvLvggmg~GG~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~-~~~~~~Lyv~d~ 230 (570)
T 3hx6_A 152 HTVLIGSLRAGGKGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSS-MNDKAALLIIDM 230 (570)
T ss_dssp EEEEEEECTTSCSEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSC-TTCCEEEEEEET
T ss_pred eEEEEEecCCCCcEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCC-CCCccEEEEEEC
Confidence 3466666666667888888865332111223331 112223333 33488998877664211 224678999999
Q ss_pred CCCceEE
Q 039497 521 DGSGLRR 527 (642)
Q Consensus 521 ~~~~~~~ 527 (642)
+++.+..
T Consensus 231 ~tG~li~ 237 (570)
T 3hx6_A 231 ETGAITR 237 (570)
T ss_dssp TTCCEEE
T ss_pred CCCceEE
Confidence 9887543
No 348
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=68.68 E-value=12 Score=39.01 Aligned_cols=58 Identities=16% Similarity=0.048 Sum_probs=42.6
Q ss_pred ccEEcCCCCEEEEEecC----------CCceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEc
Q 039497 334 FPSFSPDGGLIVFNHDF----------ELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTST 392 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~----------~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~ 392 (642)
.+.+.++|. |.|..+. .+...||.++.++++.+++.. ...+..++||||++.|++...
T Consensus 480 nL~fd~~G~-LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 480 GLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp EEEECTTCC-EEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred ceEECCCCC-EEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence 467899997 6664432 134589999998888877765 235688999999999887764
No 349
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=67.74 E-value=11 Score=39.69 Aligned_cols=57 Identities=16% Similarity=0.049 Sum_probs=42.3
Q ss_pred ccEEcCCCCEEEEEecC----------CCceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEE
Q 039497 334 FPSFSPDGGLIVFNHDF----------ELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTS 391 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~----------~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~ 391 (642)
.+.|+|+|+ |.+..+. .+...++.++...++.+++.. ...+..+.|+||++.|++..
T Consensus 480 NL~fd~~G~-LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 480 GLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEECTTCC-EEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred ceEECCCCC-EEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 568999998 4443332 145678999999888888766 45677899999999887654
No 350
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=62.27 E-value=1.3e+02 Score=30.07 Aligned_cols=147 Identities=13% Similarity=0.052 Sum_probs=83.2
Q ss_pred EEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-c-----CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497 336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-D-----RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVS 409 (642)
Q Consensus 336 ~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~-----~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~ 409 (642)
....+|+.|++..+ +.|...++..+...++.. . ..+..+..||+|+.|++.. ...+.+..+.
T Consensus 27 ~~~~n~t~i~~a~~----n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g--------~~~V~Vv~LP 94 (452)
T 3pbp_A 27 FSSQNGTRIVFIQD----NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN--------DNEIFVMEVP 94 (452)
T ss_dssp EEETTTTEEEEEET----TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC--------SSEEEEEECC
T ss_pred EEEcCCCEEEEEEC----CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec--------CCeEEEEEec
Confidence 44677888877653 566667766333344433 2 2467899999999999986 5677777775
Q ss_pred eecCCCCCCCCCc--cccceEEccccC-----CCCccCcEECCCC---CeEEEEeCCCCceeEEEEECCCCccccceeeC
Q 039497 410 FQLDPSDDNNREE--IPCDVKILTKEE-----TGNNAFPSCSPDG---KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL 479 (642)
Q Consensus 410 ~~~~~~~~~~~~~--~~~~~~~l~~~~-----~~~~~~~~~SpDg---~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l 479 (642)
. . ........ .+...+.+.-++ ...+..+.|+|-| ..|+....+ ..|.+||+..... . +..|
T Consensus 95 ~--~-~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD---~~Ir~yDl~~s~~-~-P~~L 166 (452)
T 3pbp_A 95 W--G-YSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKED---DTITMFDILNSQE-K-PIVL 166 (452)
T ss_dssp T--T-CSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETT---SCEEEEETTCTTS-C-CEEE
T ss_pred C--c-cccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecC---CEEEEEEcccCCC-C-Ccch
Confidence 3 1 00000000 000111111110 1346677898854 467777643 3789999875331 1 1222
Q ss_pred CCC---------CCcccceeEecCCCEEEEEe
Q 039497 480 TDG---------PWIDTMPSWSPKGDLIAFSS 502 (642)
Q Consensus 480 ~~~---------~~~~~~~~~spdG~~l~~~~ 502 (642)
... ...+.+++|+++|-.||...
T Consensus 167 ~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~ 198 (452)
T 3pbp_A 167 NKPNNSFGLDARVNDITDLEFSKDGLTLYCLN 198 (452)
T ss_dssp SCCCSEEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred hccccccCCCcccceEEEEEEcCCCcEEEEEe
Confidence 211 13456678999888888766
No 351
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=62.27 E-value=1.2e+02 Score=29.37 Aligned_cols=204 Identities=8% Similarity=0.098 Sum_probs=113.9
Q ss_pred eeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR 407 (642)
Q Consensus 329 ~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~ 407 (642)
+......-.+|..+-||+.. ...|.++|++.+....-.. ...+..=.|-. .+.|++++ ...++-|.
T Consensus 66 pi~AdsAIMnP~~~ViALra----g~~LQiFnletK~klks~~~~e~VvfWkWis-~~~L~lVT--------~taVyHWs 132 (365)
T 2xzh_A 66 PISADSAIMNPASKVIALKA----GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS-LNTVALVT--------DNAVYHWS 132 (365)
T ss_dssp ECCCSEEEECSSSSEEEEEE----TTEEEEEETTTTEEEEEEECSSCEEEEEECS-SSEEEEEE--------SSEEEEEE
T ss_pred ccccceeeeCCCccEEEEec----CCeEEEechHHhhhhcceecCCccEEEEecC-CCeEEEEc--------CCcEEEEc
Confidence 34555667799999888864 3679999999876433322 45555556654 45688887 56777787
Q ss_pred EEeecCCCCCCCCCccccceEEcc-ccC---CCCccCcEECCCCCeEEEEeCC--CC--ceeEEEEECCCCccccceeeC
Q 039497 408 VSFQLDPSDDNNREEIPCDVKILT-KEE---TGNNAFPSCSPDGKFLVFRSGR--SG--HKNLFVLDAVNGEFNGDIRQL 479 (642)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~~~~~~~~SpDg~~l~~~~~~--~g--~~~l~~~d~~~g~~~~~~~~l 479 (642)
+.. + . .+.++. .+. .-.+-....++|.+|++...-. ++ .+.+-+|..+.+. .+.|
T Consensus 133 ~~~--~-----s------~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~----sQ~i 195 (365)
T 2xzh_A 133 MEG--E-----S------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV----SQPI 195 (365)
T ss_dssp SST--T-----C------CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE----EEEE
T ss_pred ccC--C-----C------CCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc----ccee
Confidence 743 1 1 233332 221 0233446779999998876531 12 2355566666444 2444
Q ss_pred CCCCCcccceeEecCC-----CEEEEEecCCCCCCCCceeEEEEeCCCC---c------eEEeeec-CCCCCCCcccccc
Q 039497 480 TDGPWIDTMPSWSPKG-----DLIAFSSNRHNPDNVEAFSLYVIKPDGS---G------LRRIHVA-GPEGSGDVDRERI 544 (642)
Q Consensus 480 ~~~~~~~~~~~~spdG-----~~l~~~~~~~~~~~~~~~~l~~~d~~~~---~------~~~l~~~-~~~~~~~~~~~~~ 544 (642)
..+.. ....+-.+| +.+.|..... ....|.++++... . ...+... .... .-+
T Consensus 196 eGhaa--~F~~~~~~g~~~~~~lf~fa~r~~-----~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~------DFP 262 (365)
T 2xzh_A 196 EGHAA--SFAQFKMEGNAEESTLFCFAVRGQ-----AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQN------DFP 262 (365)
T ss_dssp CCSEE--EEEEECCTTCSSCEEEEEEEEEET-----TEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTT------CCE
T ss_pred eeeee--eeEEEecCCCCCCceEEEEEEecC-----CCcEEEEEEcCCCCCCCCCcccccceeeCCccccC------Cce
Confidence 43322 112333333 3556665543 2356888888432 1 1111110 0011 023
Q ss_pred cceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce
Q 039497 545 NHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL 592 (642)
Q Consensus 545 ~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 592 (642)
-.+..|+--..||.....+ .||+||+.++..
T Consensus 263 Vamqvs~kygviyviTK~G-----------------~ihlyDleTgt~ 293 (365)
T 2xzh_A 263 VAMQISEKHDVVFLITKYG-----------------YIHLYDLETGTC 293 (365)
T ss_dssp EEEEEETTTTEEEEEETTS-----------------EEEEEETTTCCE
T ss_pred EEEEecccCCEEEEEeCCc-----------------EEEEEEcccCcE
Confidence 3566787777777766543 899999998863
No 352
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=61.62 E-value=94 Score=33.88 Aligned_cols=136 Identities=10% Similarity=0.056 Sum_probs=69.2
Q ss_pred ccCcEECCCCCeEEE-EeCCCCceeEEEEECCCCccccceeeCCCCC----CcccceeEecCCCEEEEEecCCCCCCCCc
Q 039497 438 NAFPSCSPDGKFLVF-RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP----WIDTMPSWSPKGDLIAFSSNRHNPDNVEA 512 (642)
Q Consensus 438 ~~~~~~SpDg~~l~~-~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~----~~~~~~~~spdG~~l~~~~~~~~~~~~~~ 512 (642)
+..+...++|+ |.+ .+.. ..|+++|.++++. +.+.... ..+..+....+|+ |++....+
T Consensus 474 i~~i~~d~~g~-lWi~~~t~---~Gl~~~d~~~~~~----~~~~~~~~~~~~~~~~i~~d~~g~-lWigt~~G------- 537 (758)
T 3ott_A 474 INQIIPDNEGN-VWVLLYNN---KGIDKINPRTREV----TKLFADELTGEKSPNYLLCDEDGL-LWVGFHGG------- 537 (758)
T ss_dssp EEEEEECTTSC-EEEEETTC---SSEEEEETTTTEE----EEECTTTSCGGGCEEEEEECTTSC-EEEEETTE-------
T ss_pred eeeEEEcCCCC-EEEEccCC---CCcEEEeCCCCce----EEecCCCcCCCcccceEEECCCCC-EEEEecCc-------
Confidence 34455566665 443 2322 2599999988774 5543211 1223345566675 56665432
Q ss_pred eeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce
Q 039497 513 FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL 592 (642)
Q Consensus 513 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 592 (642)
|++++.+++..+.+...+... ..+..+.. .+| .|++.+.. .|+.++......
T Consensus 538 --l~~~~~~~~~~~~~~~~gl~~------~~i~~i~~-~~g-~lWi~t~~------------------Gl~~~~~~~~~~ 589 (758)
T 3ott_A 538 --VMRINPKDESQQSISFGSFSN------NEILSMTC-VKN-SIWVSTTN------------------GLWIIDRKTMDA 589 (758)
T ss_dssp --EEEECC--CCCCBCCCCC---------CCEEEEEE-ETT-EEEEEESS------------------CEEEEETTTCCE
T ss_pred --eEEEecCCCceEEecccCCCc------cceEEEEE-CCC-CEEEECCC------------------CeEEEcCCCcee
Confidence 999998877665543212111 02344444 244 57776643 588888877665
Q ss_pred eeccCCCCCCCCcEE-ecCCceEEee
Q 039497 593 RRLTWNGYENGTPAW-HPGNQLDLGK 617 (642)
Q Consensus 593 ~~lt~~~~~~~~~~~-s~dg~~~~~~ 617 (642)
+.............+ .+||++++..
T Consensus 590 ~~~~~~~~~~~~~~~~~~~G~l~fG~ 615 (758)
T 3ott_A 590 RQQNMTNKRFTSLLFDPKEDCVYLGG 615 (758)
T ss_dssp EEC--CCCCCSEEEEETTTTEEEEEC
T ss_pred EEecCCCCceeeeEEECCCCcEEEec
Confidence 543322222222333 3577766654
No 353
>4eqa_C PA1845 protein, putative uncharacterized protein; type VI secretion, T6S, antitoxin-toxin complex, unknown FUN; 1.60A {Pseudomonas aeruginosa} PDB: 4fgi_B
Probab=58.07 E-value=58 Score=24.55 Aligned_cols=57 Identities=14% Similarity=0.178 Sum_probs=38.8
Q ss_pred eeEEEEECCCCccccceeeCCCC-CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce
Q 039497 460 KNLFVLDAVNGEFNGDIRQLTDG-PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL 525 (642)
Q Consensus 460 ~~l~~~d~~~g~~~~~~~~l~~~-~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~ 525 (642)
.-+|+.|-++|.- -.|..+ -+.-..+..|.||+++++..-.+ ...+|..||..+-+.
T Consensus 47 ppvyladrdsgnd----criedggiwsrggvflsqdgrrvlmhefsg-----ssaelvsydsatckv 104 (153)
T 4eqa_C 47 PPVYLADRDSGND----CRIEDGGIWSRGGVFLSQDGRRVLMHEFSG-----SSAELVSYDSATCKV 104 (153)
T ss_dssp CCEEEEETTTCCE----EEECSCCCEEEEEEEEETTSSEEEEEEEET-----TEEEEEEEETTTCCE
T ss_pred CCeEeeccCCCCc----ceeecCcEeecCcEEEecCCceeeeeeccC-----CchheeeecCceeEE
Confidence 3688888888874 555443 23344567899999988776554 456788888765444
No 354
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=57.21 E-value=1.9e+02 Score=30.21 Aligned_cols=142 Identities=11% Similarity=0.013 Sum_probs=78.2
Q ss_pred cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee---cCCCCCCCCCccccc--eEEccccCCCCccCcEECCC
Q 039497 372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ---LDPSDDNNREEIPCD--VKILTKEETGNNAFPSCSPD 446 (642)
Q Consensus 372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~SpD 446 (642)
....+.+..+|||++++.... ....+.+++++.. ++ ++-..+.. ...+..+ -...+.+|.++
T Consensus 322 pksPHGv~vsPDGkyi~v~GK------LsptvtV~d~~k~~~~~~-----~k~~~~~~~~~ae~e~G--lGPlHt~Fd~~ 388 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGK------LSPTCSMIAIDKLPDLFA-----GKLADPRDVIVGEPELG--LGPLHTTFDGR 388 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECT------TSSBEEEEEGGGHHHHHT-----TCCSCGGGGEEECCBCC--SCEEEEEECSS
T ss_pred CCCCcceeeCCCCCEEEEcCC------CCCeEEEEEeehhhhhhh-----ccccCcccceEeeccCC--CcccEEEECCC
Confidence 567778899999999988774 3667777766420 01 00000000 1111111 24567799998
Q ss_pred CCeEEEEeCCCCceeEEEEECCCC------ccccc-eeeCCCCCCcccce------eEecCCCEEEEEecCCCCC-----
Q 039497 447 GKFLVFRSGRSGHKNLFVLDAVNG------EFNGD-IRQLTDGPWIDTMP------SWSPKGDLIAFSSNRHNPD----- 508 (642)
Q Consensus 447 g~~l~~~~~~~g~~~l~~~d~~~g------~~~~~-~~~l~~~~~~~~~~------~~spdG~~l~~~~~~~~~~----- 508 (642)
| .+|++.- -.++|..|+++.. +.+.+ +..+.-+ +...+. .-.|||++|+....-...+
T Consensus 389 G--~aYTtlf-idSqvvkWni~~a~~~~~g~~~~~v~~k~dv~-YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vG 464 (638)
T 3sbq_A 389 G--NAYTTLF-IDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVH-YQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVG 464 (638)
T ss_dssp S--EEEEEET-TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS-SCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCS
T ss_pred C--ceEeeee-ecceEEEEeccHHHHHhcCccCCeeeeccccc-cCCcccccCCCccCCCCccEEEEecccccccCcCCC
Confidence 8 5666532 2358999998642 21000 2222222 222222 3478999999887644321
Q ss_pred CCCceeEEEEeCCCCceEEeee
Q 039497 509 NVEAFSLYVIKPDGSGLRRIHV 530 (642)
Q Consensus 509 ~~~~~~l~~~d~~~~~~~~l~~ 530 (642)
--....--++|+.+.+.+.+..
T Consensus 465 pl~pen~QlidIsGdkM~lv~D 486 (638)
T 3sbq_A 465 PLHPENDQLIDISGDEMKLVHD 486 (638)
T ss_dssp SSCCEEEEEEECSSSSCEEEEE
T ss_pred CCCCCcceeEecCCCceEEEec
Confidence 0123445678998888777664
No 355
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=56.33 E-value=2.2e+02 Score=30.80 Aligned_cols=135 Identities=13% Similarity=0.095 Sum_probs=70.0
Q ss_pred cCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC------CcccceeEecCCCEEEEEecCCCCCCCCc
Q 039497 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP------WIDTMPSWSPKGDLIAFSSNRHNPDNVEA 512 (642)
Q Consensus 439 ~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~------~~~~~~~~spdG~~l~~~~~~~~~~~~~~ 512 (642)
..+....+|+ |.+... . .|++++..+++. +.+.... ..+..+...++|+.|++....
T Consensus 149 ~~i~~d~~g~-lWigt~-~---Gl~~~~~~~~~~----~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~-------- 211 (758)
T 3ott_A 149 YSIIRTKDNQ-IYVGTY-N---GLCRYIPSNGKF----EGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEG-------- 211 (758)
T ss_dssp EEEEECTTCC-EEEEET-T---EEEEEETTTTEE----EEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEE--------
T ss_pred EEEEEcCCCC-EEEEeC-C---CHhhCccCCCce----EEecCCCccccccceeEEEEEECCCCEEEEEECC--------
Confidence 3344455665 333442 1 589999887663 3322111 123344556667766666532
Q ss_pred eeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce
Q 039497 513 FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL 592 (642)
Q Consensus 513 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 592 (642)
.|++++..+++.+.+.... .. .+..+....+|.. ++.. .. .|+.++..++..
T Consensus 212 -Gl~~~~~~~~~~~~~~~l~-~~-------~i~~i~~d~~g~l-WigT-~~-----------------Gl~~~~~~~~~~ 263 (758)
T 3ott_A 212 -YLFQYFPSTGQIKQTEAFH-NN-------SIKSLALDGNGDL-LAGT-DN-----------------GLYVYHNDTTPL 263 (758)
T ss_dssp -EEEEEETTTTEEEEEEEEE-EE-------EEEEEEECTTCCE-EEEE-TT-----------------EEEEECCTTSCC
T ss_pred -CCeEEcCCCCeEEeccCCC-CC-------eEEEEEEcCCCCE-EEEe-CC-----------------ceeEEecCCCcE
Confidence 2999998877665443211 11 3445555666664 3333 22 577777766655
Q ss_pred eeccCCC--------CCCCCcEEecCCceEEeec
Q 039497 593 RRLTWNG--------YENGTPAWHPGNQLDLGKL 618 (642)
Q Consensus 593 ~~lt~~~--------~~~~~~~~s~dg~~~~~~~ 618 (642)
+.+.... ..+.++....+|.++++..
T Consensus 264 ~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~ 297 (758)
T 3ott_A 264 QHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTD 297 (758)
T ss_dssp EEECCCTTCTTSCSCSCEEEEEECTTCCEEEEES
T ss_pred EEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeC
Confidence 5443221 1123344455666666543
No 356
>3vpj_E TSE1-specific immunity protein; hydrolase-hydrolase inhibitor complex; 2.50A {Pseudomonas aeruginosa}
Probab=51.77 E-value=84 Score=24.56 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=37.7
Q ss_pred eEEEEECCCCccccceeeCCCC-CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce
Q 039497 461 NLFVLDAVNGEFNGDIRQLTDG-PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL 525 (642)
Q Consensus 461 ~l~~~d~~~g~~~~~~~~l~~~-~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~ 525 (642)
-+|+.|-++|.- -.|..+ -+.-..+..|.||++++...-.+ ...+|..||..+-+.
T Consensus 87 pvyladrdsgnd----criedggiwsrggvflsqdgrrvlmhefsg-----ssaelvsydsatckv 143 (192)
T 3vpj_E 87 PVYLADRDSGND----CRIEDGGIWSRGGVFLSQDGRRVLMHEFSG-----SSAELVSYDSATCKV 143 (192)
T ss_dssp CEEEEETTTSCE----EEECSCCCEEEEEEEEETTSSEEEEEEEET-----TEEEEEEEETTTCCE
T ss_pred CeeeeccCCCCc----ceeccCceeecCcEEEecCCceeeeeeccC-----CchheeeccCceeEE
Confidence 577888777774 455443 23344567899999988776554 456788888765444
No 357
>4eqa_C PA1845 protein, putative uncharacterized protein; type VI secretion, T6S, antitoxin-toxin complex, unknown FUN; 1.60A {Pseudomonas aeruginosa} PDB: 4fgi_B
Probab=50.13 E-value=79 Score=23.79 Aligned_cols=78 Identities=17% Similarity=0.046 Sum_probs=49.2
Q ss_pred eeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce
Q 039497 513 FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL 592 (642)
Q Consensus 513 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 592 (642)
.-+|+.|.++++..+|...+.. .-..+.+|.||++++...-.+... +|..||..+-++
T Consensus 47 ppvyladrdsgndcriedggiw--------srggvflsqdgrrvlmhefsgssa--------------elvsydsatckv 104 (153)
T 4eqa_C 47 PPVYLADRDSGNDCRIEDGGIW--------SRGGVFLSQDGRRVLMHEFSGSSA--------------ELVSYDSATCKV 104 (153)
T ss_dssp CCEEEEETTTCCEEEECSCCCE--------EEEEEEEETTSSEEEEEEEETTEE--------------EEEEEETTTCCE
T ss_pred CCeEeeccCCCCcceeecCcEe--------ecCcEEEecCCceeeeeeccCCch--------------heeeecCceeEE
Confidence 4589999999988887654432 123567899999998876655433 788888777654
Q ss_pred eeccCCCCCCCCcEEecCCceE
Q 039497 593 RRLTWNGYENGTPAWHPGNQLD 614 (642)
Q Consensus 593 ~~lt~~~~~~~~~~~s~dg~~~ 614 (642)
..-..- .-...+...||..+
T Consensus 105 vhredi--sgqrwavdkdglrl 124 (153)
T 4eqa_C 105 VHREDI--SGQRWAVDKDGLRL 124 (153)
T ss_dssp EEEEEC--TTCEEEEETTEEEE
T ss_pred Eeeccc--cCceEeeccccchh
Confidence 322211 11233455676554
No 358
>3vpj_E TSE1-specific immunity protein; hydrolase-hydrolase inhibitor complex; 2.50A {Pseudomonas aeruginosa}
Probab=48.38 E-value=96 Score=24.24 Aligned_cols=78 Identities=17% Similarity=0.046 Sum_probs=49.3
Q ss_pred eeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce
Q 039497 513 FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL 592 (642)
Q Consensus 513 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 592 (642)
.-+|+.|.++++..+|...+.. .-..+.+|.||++++...-.+... +|..||..+-++
T Consensus 86 ppvyladrdsgndcriedggiw--------srggvflsqdgrrvlmhefsgssa--------------elvsydsatckv 143 (192)
T 3vpj_E 86 PPVYLADRDSGNDCRIEDGGIW--------SRGGVFLSQDGRRVLMHEFSGSSA--------------ELVSYDSATCKV 143 (192)
T ss_dssp CCEEEEETTTSCEEEECSCCCE--------EEEEEEEETTSSEEEEEEEETTEE--------------EEEEEETTTCCE
T ss_pred CCeeeeccCCCCcceeccCcee--------ecCcEEEecCCceeeeeeccCCch--------------heeeccCceeEE
Confidence 4589999999988887654432 123567899999998776655432 788888777654
Q ss_pred eeccCCCCCCCCcEEecCCceE
Q 039497 593 RRLTWNGYENGTPAWHPGNQLD 614 (642)
Q Consensus 593 ~~lt~~~~~~~~~~~s~dg~~~ 614 (642)
..-..- .-...+...||..+
T Consensus 144 vhredi--sgqrwavdkdglrl 163 (192)
T 3vpj_E 144 VHREDI--SGQRWAVDKDGLRL 163 (192)
T ss_dssp EEEEEC--TTCEEEEETTEEEE
T ss_pred Eeeccc--cCceeeeccccchh
Confidence 322211 11233456676554
No 359
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=29.14 E-value=4.6e+02 Score=26.44 Aligned_cols=129 Identities=13% Similarity=0.173 Sum_probs=80.9
Q ss_pred ceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCCcc--eE
Q 039497 121 ALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWP--TW 198 (642)
Q Consensus 121 ~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~--~w 198 (642)
++.++|+..+... +..+-..-++-..|..+-||... +..|-+++++....-+-..-..... .|
T Consensus 49 ~vvIiDl~~~~~~--~rrpi~AdsAIMnP~~~iiALra-------------g~~lQiFnle~K~klks~~~~e~VvfWkW 113 (494)
T 1bpo_A 49 QVVIIDMNDPSNP--IRRPISADSAIMNPASKVIALKA-------------GKTLQIFNIEMKSKMKAHTMTDDVTFWKW 113 (494)
T ss_dssp EEEEEETTSTTSC--EEEECCCSEEEECSSSSCEEEEE-------------TTEEEEEETTTTEEEEEEECSSCCCEEEE
T ss_pred eEEEEECCCCCcc--eecccccceeeeCCCCcEEEEec-------------CCeEEEEchHHhhhhcceecCCCceEEEe
Confidence 7889998874321 11111122345677788888775 2368899998865444333233333 77
Q ss_pred eeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCC-----CCccccceeecCCcEEEEEEec--cCCceeeE
Q 039497 199 SGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPP-----GVHCFTPAAFHDGKRLAVATRR--KNRNFRHI 271 (642)
Q Consensus 199 spdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~SpdG~~l~~~~~~--~~~~~~~i 271 (642)
-.+..+.++. + . .+|.|++.+.. .+.++... +.++.....++|.+|++..... .+.-...+
T Consensus 114 is~~~l~lVT-~--t--aVyHWsi~~~s-------~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~m 181 (494)
T 1bpo_A 114 ISLNTVALVT-D--N--AVYHWSMEGES-------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAM 181 (494)
T ss_dssp EETTEEEEEC-S--S--EEEEEESSSSC-------CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEE
T ss_pred cCCCeEEEEc-C--C--eeEEecccCCC-------CchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceE
Confidence 6776766665 1 2 79999987643 44544332 3456667779999999987642 34456678
Q ss_pred EEEEe
Q 039497 272 EIYDL 276 (642)
Q Consensus 272 ~~~d~ 276 (642)
.+|..
T Consensus 182 QLYS~ 186 (494)
T 1bpo_A 182 QLYSV 186 (494)
T ss_dssp EEEES
T ss_pred EEeec
Confidence 88887
No 360
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=28.71 E-value=76 Score=30.67 Aligned_cols=13 Identities=8% Similarity=0.256 Sum_probs=9.7
Q ss_pred cEEEEEcCCCcee
Q 039497 581 DLYVVKLDGSGLR 593 (642)
Q Consensus 581 ~l~~~~~~~~~~~ 593 (642)
.|+.+|+.+|++.
T Consensus 122 ~l~ald~~tG~~~ 134 (339)
T 2be1_A 122 IMYTINMLNGEII 134 (339)
T ss_dssp EEEEEETTTCCEE
T ss_pred EEEEEECCCCcEE
Confidence 7888888777644
No 361
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=23.96 E-value=2.9e+02 Score=28.70 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=41.5
Q ss_pred CCCCeEEEEeCC----CCceeEEEEECCCCccccceeeCCCCC-----Ccccce-eEecCC----CEEEEEecCCCCCCC
Q 039497 445 PDGKFLVFRSGR----SGHKNLFVLDAVNGEFNGDIRQLTDGP-----WIDTMP-SWSPKG----DLIAFSSNRHNPDNV 510 (642)
Q Consensus 445 pDg~~l~~~~~~----~g~~~l~~~d~~~g~~~~~~~~l~~~~-----~~~~~~-~~spdG----~~l~~~~~~~~~~~~ 510 (642)
.+|+++++..+. .+...||++|+++|+. +..+.... .....+ .+..|+ ..+|+....++
T Consensus 204 ~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~l---i~~i~~~~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~Gn---- 276 (570)
T 3hx6_A 204 HNGKWAVVTGNGYSSMNDKAALLIIDMETGAI---TRKLEVTGRTGVPNGLSSPRLADNNSDGVADYAYAGDLQGN---- 276 (570)
T ss_dssp TTSSEEEEEECCBSCTTCCEEEEEEETTTCCE---EEEEEECCSTTSCCCEEEEEEECTTSSSBCCEEEEEETTSE----
T ss_pred cCCCEEEEEccccCCCCCccEEEEEECCCCce---EEEEecCCCCccCCccccceEEecCCCCceeEEEEEeCCCc----
Confidence 367887776542 2356999999999997 55553221 112233 233443 34555544443
Q ss_pred CceeEEEEeCCCCce
Q 039497 511 EAFSLYVIKPDGSGL 525 (642)
Q Consensus 511 ~~~~l~~~d~~~~~~ 525 (642)
||++|+.+...
T Consensus 277 ----lWRfDl~~~~~ 287 (570)
T 3hx6_A 277 ----LWRFDLIAGKV 287 (570)
T ss_dssp ----EEEEECSCSSC
T ss_pred ----EEEEEcCCCCc
Confidence 99999977543
Done!