Your job contains 1 sequence.
>039503
MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYG
FVTFRDPESARRACDNPNPVIDGRRANCNIASLGRPRPSPPRGRNQGGNIPYHQQQGGAP
SYGGVAASLPPPPPPPPSVIYQPFGYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGY
SLQSPRGAYSAPQAQRMPPSPAGPSYLYYPTQAEGIFPPPPTLQLPRQPFPFSSDSQTPQ
QTSAETEAAREVTSESPNT
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 039503
(259 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2196521 - symbol:AT1G22330 species:3702 "Arabi... 483 4.8e-46 1
TAIR|locus:2032120 - symbol:AT1G78260 species:3702 "Arabi... 480 1.0e-45 1
TAIR|locus:2037370 - symbol:AT1G20880 species:3702 "Arabi... 414 9.9e-39 1
TAIR|locus:2011726 - symbol:AT1G76460 species:3702 "Arabi... 403 1.5e-37 1
TAIR|locus:2017779 - symbol:AT1G22910 species:3702 "Arabi... 334 8.2e-37 2
TAIR|locus:2006998 - symbol:AT1G33470 species:3702 "Arabi... 376 1.1e-34 1
TAIR|locus:2044370 - symbol:AT2G46780 species:3702 "Arabi... 348 9.8e-32 1
UNIPROTKB|Q6GQD3 - symbol:rbm24-a "RNA-binding protein 24... 285 5.3e-30 2
TAIR|locus:4515103555 - symbol:AT5G11412 species:3702 "Ar... 310 6.8e-30 2
ZFIN|ZDB-GENE-040628-1 - symbol:rbm24a "RNA binding motif... 280 2.3e-29 2
ZFIN|ZDB-GENE-030131-5923 - symbol:rbm38 "RNA binding mot... 290 4.7e-29 2
UNIPROTKB|Q6P8A7 - symbol:rbm24 "RNA-binding protein 24" ... 285 4.7e-29 2
UNIPROTKB|Q9H0Z9 - symbol:RBM38 "RNA-binding protein 38" ... 287 7.6e-29 2
UNIPROTKB|Q9I8B3 - symbol:rbm24-b "RNA-binding protein 24... 285 1.6e-28 2
MGI|MGI:3610364 - symbol:Rbm24 "RNA binding motif protein... 284 2.5e-28 2
RGD|1584029 - symbol:Rbm24 "RNA binding motif protein 24"... 284 2.5e-28 2
MGI|MGI:1889294 - symbol:Rbm38 "RNA binding motif protein... 285 3.2e-28 2
RGD|1308503 - symbol:Rbm38 "RNA binding motif protein 38"... 285 3.2e-28 2
UNIPROTKB|Q5ZMA3 - symbol:RBM24 "RNA-binding protein 24" ... 285 4.1e-28 2
UNIPROTKB|A6QPJ1 - symbol:RBM24 "Uncharacterized protein"... 280 6.6e-28 2
UNIPROTKB|Q9BX46 - symbol:RBM24 "RNA-binding protein 24" ... 280 6.6e-28 2
UNIPROTKB|A5GFN8 - symbol:RNPC1 "Uncharacterized protein"... 281 8.4e-28 2
UNIPROTKB|E1BLB7 - symbol:RBM38 "Uncharacterized protein"... 310 1.0e-27 1
TAIR|locus:2102435 - symbol:ARP1 "ABA-regulated RNA-bindi... 309 1.3e-27 1
ZFIN|ZDB-GENE-060312-43 - symbol:rbm24b "RNA binding moti... 282 1.7e-27 2
UNIPROTKB|F1RUJ2 - symbol:RBM24 "Uncharacterized protein"... 280 2.2e-27 2
UNIPROTKB|E1BZ17 - symbol:RBM24 "RNA-binding protein 24" ... 285 2.8e-27 2
UNIPROTKB|Q5ZJX4 - symbol:RBM38 "RNA-binding protein 38" ... 305 3.5e-27 1
TAIR|locus:2077577 - symbol:AT3G06970 species:3702 "Arabi... 267 5.1e-26 2
UNIPROTKB|F6VZ39 - symbol:RBM38 "RNA-binding protein 38" ... 287 2.9e-25 1
WB|WBGene00006321 - symbol:sup-12 species:6239 "Caenorhab... 286 3.6e-25 1
UNIPROTKB|O45189 - symbol:sup-12 "Protein SUP-12, isoform... 286 3.6e-25 1
UNIPROTKB|A5GFN7 - symbol:RNPC1 "Uncharacterized protein"... 281 1.2e-24 1
TAIR|locus:2164042 - symbol:AT5G53680 species:3702 "Arabi... 262 1.3e-22 1
TAIR|locus:2164082 - symbol:AT5G53720 species:3702 "Arabi... 238 4.4e-20 1
ZFIN|ZDB-GENE-070212-1 - symbol:dazap1 "DAZ associated pr... 187 1.7e-19 2
UNIPROTKB|F1NTG9 - symbol:DAZAP1 "Uncharacterized protein... 173 3.9e-19 2
FB|FBgn0004838 - symbol:Hrb27C "Heterogeneous nuclear rib... 191 1.0e-18 2
UNIPROTKB|F1PA19 - symbol:HNRNPAB "Uncharacterized protei... 176 2.7e-18 2
UNIPROTKB|E1BAK6 - symbol:DAZAP1 "Uncharacterized protein... 173 8.7e-18 2
RGD|1305280 - symbol:Dazap1 "DAZ associated protein 1" sp... 173 9.7e-18 2
MGI|MGI:1917498 - symbol:Dazap1 "DAZ associated protein 1... 173 9.8e-18 2
UNIPROTKB|F2Z3S1 - symbol:Dazap1 "Protein Dazap1" species... 173 9.8e-18 2
UNIPROTKB|I3LB68 - symbol:DAZAP1 "Uncharacterized protein... 173 9.8e-18 2
UNIPROTKB|Q96EP5 - symbol:DAZAP1 "DAZ-associated protein ... 173 9.9e-18 2
UNIPROTKB|E2R6E4 - symbol:DAZAP1 "Uncharacterized protein... 173 9.9e-18 2
UNIPROTKB|E2RM01 - symbol:RBM24 "Uncharacterized protein"... 214 1.6e-17 1
UNIPROTKB|Q99729 - symbol:HNRNPAB "Heterogeneous nuclear ... 176 2.0e-17 2
UNIPROTKB|Q96DH6 - symbol:MSI2 "RNA-binding protein Musas... 176 1.3e-16 2
UNIPROTKB|E9PTS0 - symbol:Hnrnpab "Protein Hnrnpab" speci... 177 1.3e-16 2
UNIPROTKB|Q9QX81 - symbol:Hnrnpab "RCG34663, isoform CRA_... 177 1.3e-16 2
TAIR|locus:2055951 - symbol:AT2G22100 species:3702 "Arabi... 170 1.4e-16 2
UNIPROTKB|D6RBZ0 - symbol:HNRNPAB "Heterogeneous nuclear ... 176 1.6e-16 2
UNIPROTKB|F1NIB2 - symbol:HNRNPAB "Uncharacterized protei... 173 2.0e-16 2
TAIR|locus:2049359 - symbol:GRP7 "AT2G21660" species:3702... 177 3.2e-16 2
UNIPROTKB|Q7ZYE9 - symbol:hnrnpab "Hnrpab-prov protein" s... 175 3.9e-16 2
UNIPROTKB|Q98SJ2 - symbol:dazap1 "DAZ-associated protein ... 176 7.6e-16 2
TAIR|locus:2086325 - symbol:AT3G15010 species:3702 "Arabi... 181 1.6e-15 2
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,... 188 8.8e-15 1
TAIR|locus:2077392 - symbol:AT3G07810 species:3702 "Arabi... 178 1.4e-14 2
UNIPROTKB|I3LQ36 - symbol:I3LQ36 "Uncharacterized protein... 146 3.0e-14 2
ZFIN|ZDB-GENE-040426-1268 - symbol:msi2b "musashi homolog... 182 3.7e-14 2
UNIPROTKB|B4DHE8 - symbol:MSI2 "RNA-binding protein Musas... 185 4.0e-14 1
MGI|MGI:1923876 - symbol:Msi2 "musashi RNA-binding protei... 185 5.2e-14 1
ZFIN|ZDB-GENE-030131-185 - symbol:hnrnpab "heterogeneous ... 169 5.6e-14 2
ZFIN|ZDB-GENE-040426-2717 - symbol:hnrpdl "heterogeneous ... 162 5.9e-14 2
FB|FBgn0260943 - symbol:Rbp6 "RNA-binding protein 6" spec... 184 8.4e-14 1
TAIR|locus:2133862 - symbol:AT4G26650 species:3702 "Arabi... 186 8.7e-14 1
TAIR|locus:2055956 - symbol:UBA1A species:3702 "Arabidops... 183 8.8e-14 1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 150 1.3e-13 2
UNIPROTKB|J3KTC1 - symbol:MSI2 "RNA-binding protein Musas... 177 1.3e-13 1
UNIPROTKB|G3V6A5 - symbol:Hnrpd "Heterogeneous nuclear ri... 162 1.3e-13 2
MGI|MGI:1330294 - symbol:Hnrnpab "heterogeneous nuclear r... 177 1.7e-13 1
UNIPROTKB|Q9QX80 - symbol:Hnrnpab "Hnrpab protein" specie... 177 1.7e-13 1
RGD|620365 - symbol:Hnrpd "heterogeneous nuclear ribonucl... 162 1.8e-13 2
UNIPROTKB|Q9JJ54 - symbol:Hnrnpd "Heterogeneous nuclear r... 162 1.8e-13 2
UNIPROTKB|D6R9P3 - symbol:HNRNPAB "Heterogeneous nuclear ... 176 2.0e-13 1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein... 148 2.1e-13 2
UNIPROTKB|D6RD18 - symbol:HNRNPAB "Heterogeneous nuclear ... 176 2.2e-13 1
RGD|69255 - symbol:Hnrnpab "heterogeneous nuclear ribonuc... 177 2.2e-13 1
UNIPROTKB|Q3ZC44 - symbol:HNRNPAB "Uncharacterized protei... 176 2.3e-13 1
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin... 174 2.7e-13 1
TAIR|locus:2173967 - symbol:AT5G55550 species:3702 "Arabi... 181 3.1e-13 1
UNIPROTKB|J9P972 - symbol:DAZAP1 "Uncharacterized protein... 173 3.4e-13 1
UNIPROTKB|K7EQ02 - symbol:DAZAP1 "DAZ-associated protein ... 173 3.4e-13 1
UNIPROTKB|F1NIB4 - symbol:HNRNPAB "Uncharacterized protei... 173 3.4e-13 1
UNIPROTKB|J3QKT5 - symbol:MSI2 "RNA-binding protein Musas... 173 3.4e-13 1
WB|WBGene00003423 - symbol:msi-1 species:6239 "Caenorhabd... 176 4.0e-13 1
ZFIN|ZDB-GENE-030826-25 - symbol:msi2a "musashi homolog 2... 178 4.4e-13 1
ZFIN|ZDB-GENE-040426-2516 - symbol:zgc:77052 "zgc:77052" ... 174 5.9e-13 1
TAIR|locus:2047685 - symbol:AT2G19380 species:3702 "Arabi... 179 8.8e-13 1
POMBASE|SPBC660.15 - symbol:SPBC660.15 "mRNA cleavage fac... 177 9.1e-13 1
UNIPROTKB|F1NKP3 - symbol:RBM38 "RNA-binding protein 38" ... 169 9.1e-13 1
UNIPROTKB|F1NT70 - symbol:RBM38 "RNA-binding protein 38" ... 169 9.1e-13 1
FB|FBgn0011666 - symbol:msi "musashi" species:7227 "Droso... 164 9.9e-13 2
UNIPROTKB|Q9XSY6 - symbol:Q9XSY6 "HnRNP A/B related prote... 170 1.0e-12 1
UNIPROTKB|F1NCW4 - symbol:HNRNPD "Uncharacterized protein... 158 1.2e-12 2
UNIPROTKB|B4DM51 - symbol:MSI2 "RNA-binding protein Musas... 168 1.4e-12 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 167 1.5e-12 1
UNIPROTKB|H0YA61 - symbol:RBM24 "RNA-binding protein 24" ... 166 1.9e-12 1
WARNING: Descriptions of 823 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2196521 [details] [associations]
symbol:AT1G22330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AC068562 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P09651 HOGENOM:HOG000276232
ProtClustDB:CLSN2689288 IPI:IPI00540466 PIR:B86356
RefSeq:NP_564168.2 UniGene:At.41608 ProteinModelPortal:Q9LME7
SMR:Q9LME7 STRING:Q9LME7 PRIDE:Q9LME7 EnsemblPlants:AT1G22330.1
GeneID:838839 KEGG:ath:AT1G22330 TAIR:At1g22330 InParanoid:Q9LME7
OMA:TESHAPQ PhylomeDB:Q9LME7 Genevestigator:Q9LME7 Uniprot:Q9LME7
Length = 291
Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 109/198 (55%), Positives = 127/198 (64%)
Query: 5 HYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTF 64
+YRS FGDTT TKVFVGGLAWETPT+EMRRYF+QFG+ILEAVII+DK TGKSKGYGFVTF
Sbjct: 6 YYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTF 65
Query: 65 RDPESARRACDNPNPVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQGGAPSYGG 124
RD +SA RA +PNPVIDGR+ANCNIAS + P Q GG SY G
Sbjct: 66 RDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGS-PSQYQGGGQSSYTG 124
Query: 125 VAASLXXXXXXXXSVIYQPFGYPTYTPDYGYHQP---------QYYHQ-MYG-------T 167
+AA + ++Y +GY TY +YGYHQ QYY Q MYG +
Sbjct: 125 MAAPVQQAAAA--QLMYPSYGY-TYNSEYGYHQALYNAQLQQAQYYQQQMYGGGGATSPS 181
Query: 168 TSTPMGSPYYYGYSLQSP 185
+S M SPYYY LQ+P
Sbjct: 182 SSNIMPSPYYY---LQAP 196
>TAIR|locus:2032120 [details] [associations]
symbol:AT1G78260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P09651 HOGENOM:HOG000276232 eggNOG:NOG248750 EMBL:AY084982
EMBL:BT030002 IPI:IPI00529893 RefSeq:NP_565175.1 UniGene:At.43623
ProteinModelPortal:Q8LF90 SMR:Q8LF90 STRING:Q8LF90
EnsemblPlants:AT1G78260.1 GeneID:844161 KEGG:ath:AT1G78260
TAIR:At1g78260 InParanoid:Q8LF90 OMA:SPYYYGY PhylomeDB:Q8LF90
ProtClustDB:CLSN2689288 Genevestigator:Q8LF90 Uniprot:Q8LF90
Length = 287
Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
Identities = 107/210 (50%), Positives = 129/210 (61%)
Query: 5 HYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTF 64
+YRS FGDTT+TKVFVGGLAWETPT+EMRRYFEQFG+ILEAVII+DKNTGKSKGYGFVTF
Sbjct: 6 YYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65
Query: 65 RDPESARRACDNPNPVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQGGAPSYGG 124
R+ +SA RA +PNPVIDGR+ANCNIAS + P Q GG +Y G
Sbjct: 66 RESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGS-PSQYQSGGPSTYTG 124
Query: 125 VAASLXXXXXXXXSVIYQPFGYPTYTPD-YGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQ 183
+AA L ++Y +GY TY PD +GYHQ Y +T + YY Q
Sbjct: 125 MAAPLPPAAAP--QLMYPSYGY-TYNPDQFGYHQALY--------NTQLQQAQYYQQQQQ 173
Query: 184 SPRGAYSAPQAQRMPPSPAGPSYLYYPTQA 213
G ++P + P+ P Y Y QA
Sbjct: 174 LYGGGATSPSSSGATIMPS-PYYYGYSLQA 202
Score = 113 (44.8 bits), Expect = 0.00021, P = 0.00021
Identities = 42/137 (30%), Positives = 54/137 (39%)
Query: 141 YQP--FGYPTYTPDYGYHQPQYYHQ---MYG--TTS------TPMGSPYYYGYSLQSPRG 187
Y P FGY + Q QYY Q +YG TS T M SPYYYGYSLQ+PR
Sbjct: 146 YNPDQFGYHQALYNTQLQQAQYYQQQQQLYGGGATSPSSSGATIMPSPYYYGYSLQAPRV 205
Query: 188 AYSAPQAQRMPPSP--------AGPSYLYYPTQAEGIXXXXXXXXXXXXXXXXSSDSQTP 239
Y P +P + PS+L YP+ + + Q P
Sbjct: 206 PYQHHHHLPQPYNPQQHHHQRFSSPSFLVYPSNSS--FAPPLQGVLSSSTESEAVPQQVP 263
Query: 240 QQTSAETEAAREVTSES 256
T A E+T+ +
Sbjct: 264 AAEGEATTTAPEITTSN 280
>TAIR|locus:2037370 [details] [associations]
symbol:AT1G20880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00530203 RefSeq:NP_001185049.1 RefSeq:NP_564127.1
UniGene:At.26164 ProteinModelPortal:F4HUQ5 SMR:F4HUQ5 PRIDE:F4HUQ5
EnsemblPlants:AT1G20880.1 EnsemblPlants:AT1G20880.2 GeneID:838681
KEGG:ath:AT1G20880 OMA:MAYHSIP Uniprot:F4HUQ5
Length = 274
Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 98/210 (46%), Positives = 120/210 (57%)
Query: 5 HY-RSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVT 63
HY S FGDTTFTKVFVGGLAWET +E +RR+F+Q+GDILEAV+I+DKNTG+SKGYGFVT
Sbjct: 12 HYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVT 71
Query: 64 FRDPESARRACDNPNPVIDGRRANCNIASLXXXX--XXXXXXXXXXXNI-PYHQQQGGAP 120
FRDPE+ARRAC +P P+IDGRRANCN+ASL + P G
Sbjct: 72 FRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSPYVGSVQ 131
Query: 121 S-----YGGVAASLXXXXXXXXSVIYQPFGYPTYTPDY------GYHQP---QYYHQMYG 166
S +G V+Y P+G Y PDY G++ P Q Y Q+YG
Sbjct: 132 SPRGLHFGSHPYHQPPTYNYQQGVVY-PYGVTPYGPDYMYSQSQGFYGPYMGQQYLQVYG 190
Query: 167 TTSTPMGSP-YYYGYSLQSPRGAYSAPQAQ 195
+ SP Y YG + GA+ Q
Sbjct: 191 VPGA-VNSPGYQYGQLSHTIPGAHGYTAGQ 219
>TAIR|locus:2011726 [details] [associations]
symbol:AT1G76460 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 UniGene:At.43912
UniGene:At.70089 IPI:IPI00542968 RefSeq:NP_565132.2
UniGene:At.69045 ProteinModelPortal:F4I2E4 SMR:F4I2E4 PRIDE:F4I2E4
EnsemblPlants:AT1G76460.1 GeneID:843979 KEGG:ath:AT1G76460
OMA:YGPEYMY Uniprot:F4I2E4
Length = 285
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 97/201 (48%), Positives = 120/201 (59%)
Query: 5 HY-RSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVT 63
HY S FGDTTFTKVFVGGLAWET +E +R++FEQ+G+ILEAV+I+DKNTG+SKGYGFVT
Sbjct: 12 HYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVT 71
Query: 64 FRDPESARRACDNPNPVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQGGAPSYG 123
FRDPE+ARRAC +P P+IDGRRANCN+ASL N+P + + +P G
Sbjct: 72 FRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPYAVIP--NMP-GRLRPASPYIG 128
Query: 124 GVAA---SLXXXXXXXXSVIYQ-------PFGYPTYTPDYGYHQPQ--Y-------YHQM 164
V SL + Y P+G Y P+Y Y Q Q Y Y Q+
Sbjct: 129 NVQGPRGSLIGNYPYQQPLPYNYQQGVVYPYGVTAYGPEYMYSQSQGLYSPYMGQQYLQV 188
Query: 165 YGTTSTPMGSPYY-YGYSLQS 184
YG + SP Y YG Q+
Sbjct: 189 YGVPGA-VNSPVYQYGQLSQT 208
>TAIR|locus:2017779 [details] [associations]
symbol:AT1G22910 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00523114
RefSeq:NP_973889.1 UniGene:At.26231 ProteinModelPortal:F4I321
SMR:F4I321 EnsemblPlants:AT1G22910.3 GeneID:838898
KEGG:ath:AT1G22910 ArrayExpress:F4I321 Uniprot:F4I321
Length = 347
Score = 334 (122.6 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
Identities = 61/83 (73%), Positives = 74/83 (89%)
Query: 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESA 70
GDTT+TKVFVGGLAWET E M+++FEQFG+ILEAV+I+DK +G+SKGYGFVTFR+ E+A
Sbjct: 8 GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67
Query: 71 RRACDNPNPVIDGRRANCNIASL 93
R AC + PVIDGRRANCN+ASL
Sbjct: 68 RSACVDATPVIDGRRANCNLASL 90
Score = 78 (32.5 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
Identities = 24/61 (39%), Positives = 28/61 (45%)
Query: 144 FGYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPY-YYGYSLQSPRGAYSAPQAQRMPPSPA 202
FGY Y+PDY P + MYG TS G Y YG + S G +A A P P
Sbjct: 144 FGYSPYSPDYSSF-PTNLYGMYGCTS---GGQYGVYG-NRNSGGGGLTAAAASATPFYPC 198
Query: 203 G 203
G
Sbjct: 199 G 199
Score = 43 (20.2 bits), Expect = 3.8e-33, Sum P(2) = 3.8e-33
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 198 PPSPAGPSYLYYP 210
PP P P++ +YP
Sbjct: 125 PPPPQPPTFTHYP 137
Score = 38 (18.4 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 200 SPAGPSYLYYPTQAEGI 216
SP P Y +PT G+
Sbjct: 147 SPYSPDYSSFPTNLYGM 163
>TAIR|locus:2006998 [details] [associations]
symbol:AT1G33470 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AK176398 IPI:IPI00533784
RefSeq:NP_174613.2 UniGene:At.17522 UniGene:At.67846
ProteinModelPortal:Q67YS0 SMR:Q67YS0 PaxDb:Q67YS0 PRIDE:Q67YS0
EnsemblPlants:AT1G33470.1 GeneID:840240 KEGG:ath:AT1G33470
TAIR:At1g33470 InParanoid:Q67YS0 OMA:GAQYPFY PhylomeDB:Q67YS0
ProtClustDB:CLSN2680737 ArrayExpress:Q67YS0 Genevestigator:Q67YS0
Uniprot:Q67YS0
Length = 245
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 93/213 (43%), Positives = 120/213 (56%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTTFTKVFVGGLAWET +R YFEQFGDI+EAV+I+DK++G+SKGYGFVTF DPE+A+
Sbjct: 3 DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
Query: 72 RACDNPNPVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQGG------AP--SYG 123
+AC +P PVIDGRRANCN+A+ P H GG +P ++
Sbjct: 63 KACVDPAPVIDGRRANCNLAAFGVQRSKPSS--------PIHGHVGGRGMKVTSPFKTHF 114
Query: 124 GVAASLXXXXX--XXXSVIY-QPFGYPTYTPDYGYHQPQYYHQMYG--TTSTPM-GSPYY 177
G AA+ ++ Y PFG+ +Y+ DY Y YY+ +YG T PM GS
Sbjct: 115 GTAATAIPSPLPFSHYTLPYTNPFGFSSYSMDYNYPTQSYYN-VYGGATAQHPMYGSGPM 173
Query: 178 YGYSLQSPRGAYSAPQAQRMPPSPAGPSYLYYP 210
G + G Y Q G + L+YP
Sbjct: 174 TGVAAAPAAGFYPYLQFAEGNGPVTGYAPLHYP 206
>TAIR|locus:2044370 [details] [associations]
symbol:AT2G46780 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT022057
IPI:IPI00944264 RefSeq:NP_182201.4 UniGene:At.22279
ProteinModelPortal:Q501B0 SMR:Q501B0 PRIDE:Q501B0
EnsemblPlants:AT2G46780.1 GeneID:819291 KEGG:ath:AT2G46780
TAIR:At2g46780 OMA:FPYSTYG PhylomeDB:Q501B0 ProtClustDB:CLSN2722623
Genevestigator:Q501B0 Uniprot:Q501B0
Length = 336
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 86/179 (48%), Positives = 103/179 (57%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DT TK+FVGGLAWET + MRRYFEQFG+I+EAV+I+DKNTG+SKGYGFVTF++ E+A
Sbjct: 18 DTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAM 77
Query: 72 RACDNPNPVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQGG----APS--YGGV 125
RAC N NPVIDGRRANCN+A L + G APS + G
Sbjct: 78 RACQNMNPVIDGRRANCNLACLGAQKPRPPTSPRHGTG-RFRSPGSGVGLVAPSPQFRGS 136
Query: 126 AASLXXXXXXXXSVIYQ-PFGYPTYTPDYGYHQ----PQ-YY-HQMYGTTS-TP-MGSP 175
++S Q PF Y TY GY Q P YY H +YG +P MG P
Sbjct: 137 SSSSAFVHQQQQQHTAQFPFPYSTYGFS-GYSQEGMYPMNYYNHHLYGGQQFSPYMGHP 194
>UNIPROTKB|Q6GQD3 [details] [associations]
symbol:rbm24-a "RNA-binding protein 24-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=IMP]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 EMBL:AF223427 EMBL:BC072812 RefSeq:NP_001080995.1
UniGene:Xl.12316 HSSP:Q9H0Z9 ProteinModelPortal:Q6GQD3 SMR:Q6GQD3
GeneID:394318 KEGG:xla:394318 CTD:394318 Xenbase:XB-GENE-866276
HOVERGEN:HBG108399 Uniprot:Q6GQD3
Length = 225
Score = 285 (105.4 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
Identities = 51/82 (62%), Positives = 65/82 (79%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTT+TK+FVGGL + T +R+YFE FGDI EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 72 RACDNPNPVIDGRRANCNIASL 93
RAC +PNP+IDGR+AN N+A L
Sbjct: 67 RACKDPNPIIDGRKANVNLAYL 88
Score = 62 (26.9 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
Identities = 23/78 (29%), Positives = 31/78 (39%)
Query: 138 SVIYQPFGYPT-YTPDYGYHQPQYYHQMYGTTSTPMGSPYY-YGYSLQSPRGAYSAPQAQ 195
++I +PFG P Y Y QP T+ SPY Y + + A +A A
Sbjct: 109 ALIQRPFGIPAHYVYPQAYVQPGVVIPHVQPTAATSTSPYIDYTSAAYAQYSAAAAAAAY 168
Query: 196 RMPPSPAGPSYLYYPTQA 213
P A P+ Y T A
Sbjct: 169 DQYPYAASPAATGYVTAA 186
>TAIR|locus:4515103555 [details] [associations]
symbol:AT5G11412 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005576 "extracellular region"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:DQ487706 IPI:IPI00775531 RefSeq:NP_001119208.1
UniGene:At.69225 ProteinModelPortal:Q1G378 SMR:Q1G378 STRING:Q1G378
EnsemblPlants:AT5G11412.1 GeneID:6240527 KEGG:ath:AT5G11412
TAIR:At5g11412 OMA:IDGREAK PhylomeDB:Q1G378 ProtClustDB:CLSN2925591
Genevestigator:Q1G378 Uniprot:Q1G378
Length = 175
Score = 310 (114.2 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 54/87 (62%), Positives = 67/87 (77%)
Query: 5 HYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTF 64
HY ++ DT +TK++VGGL WET E +R YFEQFGDI+ ++ D+ TG+S+GYGFVTF
Sbjct: 41 HYANENVDTRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTF 100
Query: 65 RDPESARRACDNPNPVIDGRRANCNIA 91
RD ESA RAC NP PVIDGR A CN+A
Sbjct: 101 RDAESATRACQNPKPVIDGREAKCNLA 127
Score = 36 (17.7 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 190 SAPQAQRMPPSPAGPSYLYYP 210
+A Q Q +P P G S+ ++P
Sbjct: 138 NAQQQQVLPMYPTGTSF-HHP 157
>ZFIN|ZDB-GENE-040628-1 [details] [associations]
symbol:rbm24a "RNA binding motif protein 24a"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003228
"atrial cardiac muscle tissue development" evidence=IMP]
[GO:0072358 "cardiovascular system development" evidence=IGI]
[GO:0001947 "heart looping" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040628-1 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0001947 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
EMBL:AB080735 IPI:IPI00506301 RefSeq:NP_998030.1 UniGene:Dr.159425
ProteinModelPortal:Q76LC6 SMR:Q76LC6 STRING:Q76LC6
Ensembl:ENSDART00000110862 GeneID:405801 KEGG:dre:405801 CTD:405801
GeneTree:ENSGT00390000002308 OrthoDB:EOG4KWJVF NextBio:20817766
ArrayExpress:Q76LC6 Bgee:Q76LC6 GO:GO:0003228 Uniprot:Q76LC6
Length = 230
Score = 280 (103.6 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 50/82 (60%), Positives = 65/82 (79%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTT+TK+FVGGL + T +R+YFE FG+I EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66
Query: 72 RACDNPNPVIDGRRANCNIASL 93
RAC +PNP+IDGR+AN N+A L
Sbjct: 67 RACKDPNPIIDGRKANVNLAYL 88
Score = 61 (26.5 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 24/81 (29%), Positives = 31/81 (38%)
Query: 140 IYQPFGYPT-YTPDYGYHQPQYY--HQMYGTTSTPMGSPY--YYG--YSLQSPRGAYSAP 192
I +P+G PT Y + QP H TS SPY Y G Y+ + +A
Sbjct: 111 IQRPYGIPTHYVYPQAFMQPSVVIPHIQPTATSATASSPYIDYTGAAYAQYASAATAAAA 170
Query: 193 QAQRMPPSPAGPSYLYYPTQA 213
A P A P+ Y A
Sbjct: 171 AAYEQYPYAASPAATGYVAAA 191
Score = 45 (20.9 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 162 HQMYGTTSTPMGSPYY----YGYSLQSPRGAYSAPQAQRMPPSPAGPSYLYYPTQAE 214
++ Y ++P + Y YGY++Q P A +AP + + G Y P Q +
Sbjct: 173 YEQYPYAASPAATGYVAAAGYGYAMQQPL-ATAAPGSAAAAAAAFGQ---YQPQQLQ 225
>ZFIN|ZDB-GENE-030131-5923 [details] [associations]
symbol:rbm38 "RNA binding motif protein 38"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-5923 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 HSSP:Q61474
HOVERGEN:HBG108399 EMBL:AB097829 IPI:IPI00861911 UniGene:Dr.80564
ProteinModelPortal:Q7T2V9 SMR:Q7T2V9 STRING:Q7T2V9
InParanoid:Q7T2V9 Uniprot:Q7T2V9
Length = 246
Score = 290 (107.1 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 54/88 (61%), Positives = 67/88 (76%)
Query: 6 YRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFR 65
Y S DTTFTK+FVGGL + T +R+YFE FGDI EAV+I+D+ TGKS+GYGFVT
Sbjct: 15 YPSIQKDTTFTKIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTGKSRGYGFVTMM 74
Query: 66 DPESARRACDNPNPVIDGRRANCNIASL 93
D +A RAC +PNP+IDGR+AN N+A L
Sbjct: 75 DKSAAERACKDPNPIIDGRKANVNLAYL 102
Score = 48 (22.0 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 22/76 (28%), Positives = 29/76 (38%)
Query: 146 YPTYTP-DYGYHQPQYYHQ-------MYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRM 197
+PT YG QP Y Q + T + S Y +S + A SA +
Sbjct: 121 HPTLIQRQYGLSQPYVYPQAVLQPSLLLPTQVSSTSSSPYLDFSTAYAQYAASAFEQYPY 180
Query: 198 PPSPAGPSYLYYPTQA 213
SP SY+Y P A
Sbjct: 181 AASPGFLSYMYPPGTA 196
Score = 42 (19.8 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 21/70 (30%), Positives = 27/70 (38%)
Query: 142 QPFGYPTYTPDYGYHQPQYYHQMYGTTSTPM--GSPYYYGYSL----QSPRGAYSAPQAQ 195
QP+ YP P Q+ T+S+P S Y Y+ Q P A +
Sbjct: 133 QPYVYPQAVLQPSLLLPT---QVSSTSSSPYLDFSTAYAQYAASAFEQYPYAASPGFLSY 189
Query: 196 RMPPSPAGPS 205
PP AGPS
Sbjct: 190 MYPPGTAGPS 199
>UNIPROTKB|Q6P8A7 [details] [associations]
symbol:rbm24 "RNA-binding protein 24" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0010830 "regulation of myotube differentiation"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9
HOVERGEN:HBG108399 CTD:221662 OrthoDB:EOG4DV5NS EMBL:BC061322
RefSeq:NP_989016.1 UniGene:Str.6492 ProteinModelPortal:Q6P8A7
SMR:Q6P8A7 STRING:Q6P8A7 GeneID:394612 KEGG:xtr:394612
Xenbase:XB-GENE-493647 eggNOG:NOG248750 InParanoid:Q6P8A7
Bgee:Q6P8A7 Uniprot:Q6P8A7
Length = 226
Score = 285 (105.4 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 51/82 (62%), Positives = 65/82 (79%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTT+TK+FVGGL + T +R+YFE FGDI EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 72 RACDNPNPVIDGRRANCNIASL 93
RAC +PNP+IDGR+AN N+A L
Sbjct: 67 RACKDPNPIIDGRKANVNLAYL 88
Score = 53 (23.7 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 21/79 (26%), Positives = 30/79 (37%)
Query: 138 SVIYQPFGYPT-YTPDYGYHQPQYYHQMYGTTSTPMGSPY--YYGYSLQSPRGAYSAPQA 194
++I +PFG P Y + + QP + SPY Y + A +A A
Sbjct: 109 ALIQRPFGIPAHYVYPHAFVQPGVVIPHVQQAAAASTSPYIDYTSAAYAQYSAAAAAAAA 168
Query: 195 QRMPPSPAGPSYLYYPTQA 213
P A P+ Y T A
Sbjct: 169 YDQYPYAASPATTGYVTTA 187
>UNIPROTKB|Q9H0Z9 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA;IDA] [GO:0010830 "regulation of myotube
differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IEA;IDA]
[GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IDA] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IDA] [GO:0006978 "DNA damage response,
signal transduction by p53 class mediator resulting in
transcription of p21 class mediator" evidence=IDA] [GO:0007050
"cell cycle arrest" evidence=IDA] [GO:0008285 "negative regulation
of cell proliferation" evidence=IDA] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CH471077 GO:GO:0008285
GO:GO:0030154 GO:GO:0006977 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007050
GO:GO:0007049 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
eggNOG:COG0724 GO:GO:0070935 GO:GO:0010830 EMBL:AL109955
HOVERGEN:HBG108399 EMBL:AF432218 EMBL:X75314 EMBL:X75315
EMBL:BC018711 IPI:IPI00306057 IPI:IPI00374855 RefSeq:NP_059965.2
RefSeq:NP_906270.1 UniGene:Hs.236361 PDB:2CQD PDBsum:2CQD
ProteinModelPortal:Q9H0Z9 SMR:Q9H0Z9 IntAct:Q9H0Z9 STRING:Q9H0Z9
PhosphoSite:Q9H0Z9 DMDM:215273895 PaxDb:Q9H0Z9 DNASU:55544
Ensembl:ENST00000356208 Ensembl:ENST00000440234 GeneID:55544
KEGG:hsa:55544 UCSC:uc010zzj.2 CTD:55544 GeneCards:GC20P055966
H-InvDB:HIX0015939 HGNC:HGNC:15818 HPA:CAB017036 MIM:612428
neXtProt:NX_Q9H0Z9 PharmGKB:PA34449 InParanoid:Q9H0Z9 OMA:VGYGYPA
EvolutionaryTrace:Q9H0Z9 GenomeRNAi:55544 NextBio:59995
ArrayExpress:Q9H0Z9 Bgee:Q9H0Z9 CleanEx:HS_RBM38
Genevestigator:Q9H0Z9 GermOnline:ENSG00000132819 Uniprot:Q9H0Z9
Length = 239
Score = 287 (106.1 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
Identities = 52/82 (63%), Positives = 65/82 (79%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTTFTK+FVGGL + T +R+YFE FGDI EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89
Query: 72 RACDNPNPVIDGRRANCNIASL 93
RAC +PNP+IDGR+AN N+A L
Sbjct: 90 RACKDPNPIIDGRKANVNLAYL 111
Score = 49 (22.3 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
Identities = 19/91 (20%), Positives = 28/91 (30%)
Query: 158 PQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGPSYLYYPTQAEGIX 217
P + YG T + P S+ P + + + +PA P+Y YP
Sbjct: 131 PTLIQRTYGLTPHYIYPPAIVQPSVVIPAAPVPSLSSPYIEYTPASPAYAQYPPATYDQY 190
Query: 218 XXXXXXXXXXXXXXXSSDSQTPQQTSAETEA 248
S + PQ SA A
Sbjct: 191 PYAASPATAASFVGYSYPAAVPQALSAAAPA 221
>UNIPROTKB|Q9I8B3 [details] [associations]
symbol:rbm24-b "RNA-binding protein 24-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=ISS]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ271404
EMBL:BC044956 RefSeq:NP_001079578.1 UniGene:Xl.467
ProteinModelPortal:Q9I8B3 SMR:Q9I8B3 GeneID:379265 KEGG:xla:379265
CTD:379265 Xenbase:XB-GENE-6256347 Uniprot:Q9I8B3
Length = 224
Score = 285 (105.4 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 51/82 (62%), Positives = 65/82 (79%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTT+TK+FVGGL + T +R+YFE FGDI EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 72 RACDNPNPVIDGRRANCNIASL 93
RAC +PNP+IDGR+AN N+A L
Sbjct: 67 RACKDPNPIIDGRKANVNLAYL 88
Score = 48 (22.0 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 20/77 (25%), Positives = 29/77 (37%)
Query: 138 SVIYQPFGYPT-YTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQR 196
+++ +P+G P Y Y Q T+ SPY S + A +A A
Sbjct: 109 ALVQRPYGIPAHYVYPQAYVQQGLVIPHVQQTAAASTSPYIDYTSAAYAQYAAAAAAAYD 168
Query: 197 MPPSPAGPSYLYYPTQA 213
P A P+ Y T A
Sbjct: 169 QYPYAASPATTGYVTAA 185
>MGI|MGI:3610364 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IMP] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:3610364 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ OrthoDB:EOG4DV5NS
EMBL:AC124411 IPI:IPI00380986 RefSeq:NP_001074894.1
UniGene:Mm.38269 ProteinModelPortal:D3Z4I3 SMR:D3Z4I3
Ensembl:ENSMUST00000037923 GeneID:666794 KEGG:mmu:666794
UCSC:uc007qhe.1 NextBio:430851 Bgee:D3Z4I3 Uniprot:D3Z4I3
Length = 236
Score = 284 (105.0 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 51/82 (62%), Positives = 65/82 (79%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTT+TK+FVGGL + T +R+YFE FGDI EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 72 RACDNPNPVIDGRRANCNIASL 93
RAC +PNP+IDGR+AN N+A L
Sbjct: 67 RACKDPNPIIDGRKANVNLAYL 88
Score = 47 (21.6 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 23/80 (28%), Positives = 34/80 (42%)
Query: 138 SVIYQPFGYPT-YTPDYGYHQPQYY-HQMYGTTSTPMGSPY--YYG--YSLQSPRGAYSA 191
++I +PFG P Y + QP + T + +PY Y G Y+ S A +A
Sbjct: 109 ALIQRPFGIPAHYVYPQAFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAAA 168
Query: 192 PQA--QRMP--PSPAGPSYL 207
A + P SPA Y+
Sbjct: 169 AAAAYDQYPYAASPAAAGYV 188
>RGD|1584029 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0010830
"regulation of myotube differentiation" evidence=IEA;ISO]
[GO:0043488 "regulation of mRNA stability" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1584029 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0043488 GO:GO:0010830 CTD:221662
OrthoDB:EOG4DV5NS IPI:IPI00214952 RefSeq:NP_001178029.1
UniGene:Rn.199020 ProteinModelPortal:D3ZLP6
Ensembl:ENSRNOT00000022768 GeneID:690139 KEGG:rno:690139
NextBio:740266 Uniprot:D3ZLP6
Length = 236
Score = 284 (105.0 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 51/82 (62%), Positives = 65/82 (79%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTT+TK+FVGGL + T +R+YFE FGDI EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 72 RACDNPNPVIDGRRANCNIASL 93
RAC +PNP+IDGR+AN N+A L
Sbjct: 67 RACKDPNPIIDGRKANVNLAYL 88
Score = 47 (21.6 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 23/80 (28%), Positives = 34/80 (42%)
Query: 138 SVIYQPFGYPT-YTPDYGYHQPQYY-HQMYGTTSTPMGSPY--YYG--YSLQSPRGAYSA 191
++I +PFG P Y + QP + T + +PY Y G Y+ S A +A
Sbjct: 109 ALIQRPFGIPAHYVYPQAFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAAA 168
Query: 192 PQA--QRMP--PSPAGPSYL 207
A + P SPA Y+
Sbjct: 169 AAAAYDQYPYAASPAATGYV 188
>MGI|MGI:1889294 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO;IMP]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005829 "cytosol" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=ISO]
[GO:0006978 "DNA damage response, signal transduction by p53 class
mediator resulting in transcription of p21 class mediator"
evidence=ISO] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008285 "negative regulation
of cell proliferation" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IDA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1889294 GO:GO:0005829 GO:GO:0005634
GO:GO:0008285 GO:GO:0030154 GO:GO:0006977 GO:GO:0008380
GO:GO:0000166 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0007050 EMBL:CH466551 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 HOGENOM:HOG000276232 GO:GO:0070935 EMBL:AL928599
GO:GO:0010830 HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308
OrthoDB:EOG4DV5NS eggNOG:NOG248750 CTD:55544 OMA:VGYGYPA
EMBL:X75316 EMBL:AK146026 EMBL:AK162141 EMBL:AK172625 EMBL:BC085307
IPI:IPI00122313 PIR:S38384 RefSeq:NP_062420.2 UniGene:Mm.485782
ProteinModelPortal:Q62176 SMR:Q62176 STRING:Q62176
PhosphoSite:Q62176 PaxDb:Q62176 PRIDE:Q62176
Ensembl:ENSMUST00000029014 Ensembl:ENSMUST00000173393 GeneID:56190
KEGG:mmu:56190 UCSC:uc008odh.1 InParanoid:Q5U418 ChiTaRS:RBM38
NextBio:311992 Bgee:Q62176 CleanEx:MM_RBM38 Genevestigator:Q62176
GermOnline:ENSMUSG00000027510 Uniprot:Q62176
Length = 237
Score = 285 (105.4 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 52/82 (63%), Positives = 65/82 (79%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTTFTK+FVGGL + T +R+YFE FGDI EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 28 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87
Query: 72 RACDNPNPVIDGRRANCNIASL 93
RAC +PNP+IDGR+AN N+A L
Sbjct: 88 RACKDPNPIIDGRKANVNLAYL 109
Score = 45 (20.9 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 13/53 (24%), Positives = 21/53 (39%)
Query: 158 PQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGPSYLYYP 210
P + YG T + P S+ P + + + +PA P+Y YP
Sbjct: 129 PTLIQRTYGLTPHYIYPPAIVQPSVVIPATPVPSLSSPYLEYTPASPAYAQYP 181
Score = 43 (20.2 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 20/63 (31%), Positives = 24/63 (38%)
Query: 148 TY--TPDYGYHQPQYYHQMYGTTSTP---MGSPYYYGYSLQSPRGAYSAPQAQRMPPSPA 202
TY TP Y Y P +TP + SPY Y+ SP A P P A
Sbjct: 135 TYGLTPHYIY-PPAIVQPSVVIPATPVPSLSSPYLE-YTPASPAYAQYPPATYDQYPYAA 192
Query: 203 GPS 205
P+
Sbjct: 193 SPA 195
>RGD|1308503 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=IEA] [GO:0006978 "DNA
damage response, signal transduction by p53 class mediator
resulting in transcription of p21 class mediator" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0010830
"regulation of myotube differentiation" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1308503 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 GO:GO:0070935 GO:GO:0010830 EMBL:CH474062
GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS OMA:VGYGYPA
IPI:IPI00190605 UniGene:Rn.17628 Ensembl:ENSRNOT00000008764
Uniprot:D3ZGE9
Length = 237
Score = 285 (105.4 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 52/82 (63%), Positives = 65/82 (79%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTTFTK+FVGGL + T +R+YFE FGDI EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 28 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87
Query: 72 RACDNPNPVIDGRRANCNIASL 93
RAC +PNP+IDGR+AN N+A L
Sbjct: 88 RACKDPNPIIDGRKANVNLAYL 109
Score = 45 (20.9 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 13/53 (24%), Positives = 21/53 (39%)
Query: 158 PQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGPSYLYYP 210
P + YG T + P S+ P + + + +PA P+Y YP
Sbjct: 129 PTLIQRTYGLTPHYIYPPAIVQPSVVIPATPVPSLSSPYLEYTPASPAYAQYP 181
Score = 43 (20.2 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 20/63 (31%), Positives = 24/63 (38%)
Query: 148 TY--TPDYGYHQPQYYHQMYGTTSTP---MGSPYYYGYSLQSPRGAYSAPQAQRMPPSPA 202
TY TP Y Y P +TP + SPY Y+ SP A P P A
Sbjct: 135 TYGLTPHYIY-PPAIVQPSVVIPATPVPSLSSPYLE-YTPASPAYAQYPPATYDQYPYAA 192
Query: 203 GPS 205
P+
Sbjct: 193 SPA 195
>UNIPROTKB|Q5ZMA3 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ719481
IPI:IPI00971402 RefSeq:NP_001012881.1 UniGene:Gga.39322
ProteinModelPortal:Q5ZMA3 SMR:Q5ZMA3 STRING:Q5ZMA3 GeneID:420846
KEGG:gga:420846 CTD:221662 NextBio:20823702 Uniprot:Q5ZMA3
Length = 225
Score = 285 (105.4 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
Identities = 51/82 (62%), Positives = 65/82 (79%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTT+TK+FVGGL + T +R+YFE FGDI EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 72 RACDNPNPVIDGRRANCNIASL 93
RAC +PNP+IDGR+AN N+A L
Sbjct: 67 RACKDPNPIIDGRKANVNLAYL 88
Score = 44 (20.5 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
Identities = 18/70 (25%), Positives = 27/70 (38%)
Query: 138 SVIYQPFGYPT-YTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQ- 195
++I +PFG P Y + QP + + Y GY+ + YSA A
Sbjct: 109 ALIQRPFGIPAHYVYPQAFVQPGVVIPHVQPAAAAASTTPYIGYT-GAAYAQYSAAAAAY 167
Query: 196 RMPPSPAGPS 205
P A P+
Sbjct: 168 EQYPYAASPA 177
>UNIPROTKB|A6QPJ1 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
HOGENOM:HOG000276232 GO:GO:0010830 HOVERGEN:HBG108399 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ eggNOG:NOG248750
EMBL:DAAA02055633 EMBL:BC149345 IPI:IPI00711385
RefSeq:NP_001098455.1 UniGene:Bt.111570 SMR:A6QPJ1
Ensembl:ENSBTAT00000038477 GeneID:524220 KEGG:bta:524220
NextBio:20873922 Uniprot:A6QPJ1
Length = 236
Score = 280 (103.6 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
Identities = 50/82 (60%), Positives = 65/82 (79%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTT+TK+FVGGL + T +R+YFE FG+I EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 72 RACDNPNPVIDGRRANCNIASL 93
RAC +PNP+IDGR+AN N+A L
Sbjct: 67 RACKDPNPIIDGRKANVNLAYL 88
Score = 47 (21.6 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
Identities = 23/80 (28%), Positives = 34/80 (42%)
Query: 138 SVIYQPFGYPT-YTPDYGYHQPQYY-HQMYGTTSTPMGSPY--YYG--YSLQSPRGAYSA 191
++I +PFG P Y + QP + T + +PY Y G Y+ S A +A
Sbjct: 109 ALIQRPFGIPAHYVYPQAFVQPGVVIPHVQPTAAAASTAPYIDYTGAAYAQYSAAAAAAA 168
Query: 192 PQA--QRMP--PSPAGPSYL 207
A + P SPA Y+
Sbjct: 169 AAAAYDQYPYAASPAAAGYV 188
Score = 40 (19.1 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 162 HQMYGTTSTPMGSPYY----YGYSLQSPRGAYSAP--QAQRMPPSPAGPSY-LYYPTQAE 214
+ Y ++P + Y YGY++Q P A +AP A + A ++ Y P Q +
Sbjct: 173 YDQYPYAASPAAAGYVTAGGYGYAVQQPITA-AAPGTAAAAAAAAAAAAAFGQYQPQQLQ 231
>UNIPROTKB|Q9BX46 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
CTD:221662 EMBL:AK055391 EMBL:AK095016 EMBL:AY547318 EMBL:AL136305
EMBL:BC104810 EMBL:BC104808 IPI:IPI00411370 IPI:IPI00827745
RefSeq:NP_001137413.1 RefSeq:NP_001137414.1 RefSeq:NP_694565.1
UniGene:Hs.741190 ProteinModelPortal:Q9BX46 SMR:Q9BX46
IntAct:Q9BX46 MINT:MINT-2879164 STRING:Q9BX46 PhosphoSite:Q9BX46
DMDM:74761312 PRIDE:Q9BX46 Ensembl:ENST00000318204
Ensembl:ENST00000379052 GeneID:221662 KEGG:hsa:221662
UCSC:uc003nbz.4 UCSC:uc003nca.3 GeneCards:GC06P017281
HGNC:HGNC:21539 neXtProt:NX_Q9BX46 PharmGKB:PA134964569
InParanoid:Q9BX46 OMA:LQADRMQ OrthoDB:EOG4DV5NS PhylomeDB:Q9BX46
GenomeRNAi:221662 NextBio:91409 ArrayExpress:Q9BX46 Bgee:Q9BX46
CleanEx:HS_RBM24 Genevestigator:Q9BX46 Uniprot:Q9BX46
Length = 236
Score = 280 (103.6 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
Identities = 50/82 (60%), Positives = 65/82 (79%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTT+TK+FVGGL + T +R+YFE FG+I EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 72 RACDNPNPVIDGRRANCNIASL 93
RAC +PNP+IDGR+AN N+A L
Sbjct: 67 RACKDPNPIIDGRKANVNLAYL 88
Score = 47 (21.6 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
Identities = 23/80 (28%), Positives = 34/80 (42%)
Query: 138 SVIYQPFGYPT-YTPDYGYHQPQYY-HQMYGTTSTPMGSPY--YYG--YSLQSPRGAYSA 191
++I +PFG P Y + QP + T + +PY Y G Y+ S A +A
Sbjct: 109 ALIQRPFGIPAHYVYPQAFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAAA 168
Query: 192 PQA--QRMP--PSPAGPSYL 207
A + P SPA Y+
Sbjct: 169 AAAAYDQYPYAASPAAAGYV 188
Score = 40 (19.1 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 162 HQMYGTTSTPMGSPYY----YGYSLQSPRGAYSAP--QAQRMPPSPAGPSY-LYYPTQAE 214
+ Y ++P + Y YGY++Q P A +AP A + A ++ Y P Q +
Sbjct: 173 YDQYPYAASPAAAGYVTAGGYGYAVQQPITA-AAPGTAAAAAAAAAAAAAFGQYQPQQLQ 231
>UNIPROTKB|A5GFN8 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
HOGENOM:HOG000276232 GO:GO:0070935 GO:GO:0010830 EMBL:CR956362
HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS
CTD:55544 OMA:VGYGYPA UniGene:Ssc.29738 RefSeq:NP_001098782.1
SMR:A5GFN8 STRING:A5GFN8 Ensembl:ENSSSCT00000008216
GeneID:100125973 KEGG:ssc:100125973 Uniprot:A5GFN8
Length = 239
Score = 281 (104.0 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 52/82 (63%), Positives = 64/82 (78%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTTFTK+FVGGL + T +R+YFE FGDI EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89
Query: 72 RACDNPNPVIDGRRANCNIASL 93
RAC +PNP IDGR+AN N+A L
Sbjct: 90 RACKDPNPNIDGRKANVNLAYL 111
Score = 45 (20.9 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 23/106 (21%), Positives = 31/106 (29%)
Query: 158 PQYYHQMYGTTSTPMGSPYY-YGYSLQSPRGAY-SAPQAQRMPP----SPAGPSYLYYPT 211
P + YG T P+Y Y ++ P +AP P +PA P+Y YP
Sbjct: 131 PTLIQRTYGLT------PHYIYPQAIVQPSVVIPAAPVPSLSSPYIEYTPASPAYAQYPP 184
Query: 212 QAEGIXXXXXXXXXXXXXXXXSSDSQTPQQTSAETEAAREVTSESP 257
+ PQ SA A P
Sbjct: 185 ATYDQYPYAASPATAASFVSYGYPAAVPQALSAAAPAGTAFVQYQP 230
>UNIPROTKB|E1BLB7 [details] [associations]
symbol:RBM38 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
GO:GO:0070935 GO:GO:0010830 GeneTree:ENSGT00390000002308 CTD:55544
OMA:VGYGYPA EMBL:DAAA02036351 IPI:IPI00696591 RefSeq:NP_001192952.1
UniGene:Bt.106613 ProteinModelPortal:E1BLB7
Ensembl:ENSBTAT00000010660 GeneID:533516 KEGG:bta:533516
NextBio:20876057 Uniprot:E1BLB7
Length = 239
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 81/213 (38%), Positives = 109/213 (51%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTTFTK+FVGGL + T +R+YFE FGDI EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89
Query: 72 RACDNPNPVIDGRRANCNIASLXXX-XXXXXXXXXXXXNIP---YHQQQGGAPSYGGVAA 127
RAC +PNP IDGR+AN N+A L +P + G P Y A
Sbjct: 90 RACKDPNPNIDGRKANVNLAYLGAKPRSLQTGFAIGVQQVPPTLIQRTYGLTPHYIYPQA 149
Query: 128 SLXXXXXXXXSVIYQPFGYP--TYTPD---YGYHQPQYYHQMYGTTSTPMGSPYYYGYSL 182
+ + + P P YTP Y + P Y Q Y ++P + + GYS
Sbjct: 150 IVQPSVVIPAAPV-PPLSSPYIEYTPASPAYAQYPPATYDQ-YPYAASPATAASFVGYSY 207
Query: 183 QSPRGAYSAPQAQRMPPSPAGPSYLYY-PTQAE 214
+ + PQA +PAG ++L Y P Q +
Sbjct: 208 PA-----AVPQALSAA-APAGTTFLQYQPPQLQ 234
>TAIR|locus:2102435 [details] [associations]
symbol:ARP1 "ABA-regulated RNA-binding protein 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0009414 "response to water deprivation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0010029
"regulation of seed germination" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0005634 EMBL:CP002686 GO:GO:0000166
GO:GO:0009651 GO:GO:0009414 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0010029 EMBL:AL138650 HSSP:P11940 IPI:IPI00531276 PIR:T47636
RefSeq:NP_191037.1 UniGene:At.20812 ProteinModelPortal:Q9M1S3
SMR:Q9M1S3 DNASU:824642 EnsemblPlants:AT3G54770.1 GeneID:824642
KEGG:ath:AT3G54770 TAIR:At3g54770 InParanoid:Q9M1S3 OMA:FYHFHQS
PhylomeDB:Q9M1S3 ProtClustDB:CLSN2685114 Genevestigator:Q9M1S3
Uniprot:Q9M1S3
Length = 261
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 77/189 (40%), Positives = 98/189 (51%)
Query: 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPES 69
FGDT TKVFVGGLAW+T E M +F ++GDILEAVIISDK T +SKGYGFVTF+D ++
Sbjct: 11 FGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKA 70
Query: 70 ARRACDNPNPVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQGGAPSYGGVAASL 129
A RAC++ P+I+GRRANCN+ASL P + + P G S
Sbjct: 71 ATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQG-PKNGNRATPPHVGN--HSQ 127
Query: 130 XXXXXXXXSVIYQPFGYPTYTPDYGYHQPQYY---HQMYGTTSTPMGSPYYYGYSLQSPR 186
+ +Q + P YGY P Y + + +G Y GY Q
Sbjct: 128 WYYPSGFTNQQHQQQNHQA-VPFYGY--PSAYVAPNMTFNQKVGYVGGTYMNGYYAQMQP 184
Query: 187 GAYSAPQAQ 195
S PQ Q
Sbjct: 185 QPQSQPQPQ 193
>ZFIN|ZDB-GENE-060312-43 [details] [associations]
symbol:rbm24b "RNA binding motif protein 24b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0001947 "heart
looping" evidence=IMP] [GO:0072358 "cardiovascular system
development" evidence=IGI] [GO:0003228 "atrial cardiac muscle
tissue development" evidence=IMP] [GO:0003229 "ventricular cardiac
muscle tissue development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-060312-43 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0001947 GO:GO:0003229
GeneTree:ENSGT00390000002308 GO:GO:0003228 EMBL:CT027645
IPI:IPI00898048 ProteinModelPortal:E9QCG4
Ensembl:ENSDART00000127556 Bgee:E9QCG4 Uniprot:E9QCG4
Length = 245
Score = 282 (104.3 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
Identities = 50/82 (60%), Positives = 65/82 (79%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTT+TK+FVGGL + T +R+YFE FG+I EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAE 66
Query: 72 RACDNPNPVIDGRRANCNIASL 93
RAC +PNP+IDGR+AN N+A L
Sbjct: 67 RACKDPNPIIDGRKANVNLAYL 88
Score = 41 (19.5 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
Identities = 26/105 (24%), Positives = 36/105 (34%)
Query: 120 PSYGGVAASLXXXXXXXXSVIYQP---FGYPTYTPD-----YGYHQPQYYHQMYGTTSTP 171
P G A++ I QP FG P P YG + + +Y
Sbjct: 74 PIIDGRKANVNLAYLGAKPRILQPGFSFGVPQIHPTFLQRPYGDSEDDHSPLLYPPPFRQ 133
Query: 172 -MGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGPS--YLYYPTQA 213
M P +Y Y + + P Q SPA + YL Y + A
Sbjct: 134 VMRIPAHYVYPQAFVQPSVVIPHVQASSSSPAAAATPYLDYSSAA 178
>UNIPROTKB|F1RUJ2 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 GeneTree:ENSGT00390000002308 OMA:LQADRMQ
EMBL:CU466948 Ensembl:ENSSSCT00000001161 Uniprot:F1RUJ2
Length = 254
Score = 280 (103.6 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 50/82 (60%), Positives = 65/82 (79%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTT+TK+FVGGL + T +R+YFE FG+I EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 25 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 84
Query: 72 RACDNPNPVIDGRRANCNIASL 93
RAC +PNP+IDGR+AN N+A L
Sbjct: 85 RACKDPNPIIDGRKANVNLAYL 106
Score = 42 (19.8 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 22/80 (27%), Positives = 33/80 (41%)
Query: 138 SVIYQPFGYPT-YTPDYGYHQPQYY-HQMYGTTSTPMGSPY--YYG--YSLQSPRGAYSA 191
++I +PFG P Y + QP + + +PY Y G Y+ S A +A
Sbjct: 127 ALIQRPFGIPAHYVYPQAFVQPGVVIPHVQPAAAAASTTPYIDYTGAAYAQYSAAAAAAA 186
Query: 192 PQA--QRMP--PSPAGPSYL 207
A + P SPA Y+
Sbjct: 187 AAAAYDQYPYAASPAAAGYV 206
Score = 40 (19.1 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 162 HQMYGTTSTPMGSPYY----YGYSLQSPRGAYSAP--QAQRMPPSPAGPSY-LYYPTQAE 214
+ Y ++P + Y YGY++Q P A +AP A + A ++ Y P Q +
Sbjct: 191 YDQYPYAASPAAAGYVTAGGYGYAVQQPITA-AAPGTAAAAAAAAAAAAAFGQYQPQQLQ 249
>UNIPROTKB|E1BZ17 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0010830 "regulation of
myotube differentiation" evidence=IEA] [GO:0043488 "regulation of
mRNA stability" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 GO:GO:0010830
GeneTree:ENSGT00390000002308 EMBL:AADN02027548 EMBL:AADN02027547
IPI:IPI00580084 ProteinModelPortal:E1BZ17
Ensembl:ENSGALT00000020752 OMA:ILHRSCL Uniprot:E1BZ17
Length = 245
Score = 285 (105.4 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 51/82 (62%), Positives = 65/82 (79%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTT+TK+FVGGL + T +R+YFE FGDI EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 72 RACDNPNPVIDGRRANCNIASL 93
RAC +PNP+IDGR+AN N+A L
Sbjct: 67 RACKDPNPIIDGRKANVNLAYL 88
Score = 36 (17.7 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 138 SVIYQPFGYPT-YTPDYGYHQP 158
++I +PFG P Y + QP
Sbjct: 109 ALIQRPFGIPAHYVYPQAFVQP 130
>UNIPROTKB|Q5ZJX4 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 GO:GO:0030154
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000276232 HSSP:Q9H0Z9 HOVERGEN:HBG108399
OrthoDB:EOG4DV5NS eggNOG:NOG248750 EMBL:AJ720310 IPI:IPI00586902
UniGene:Gga.5690 ProteinModelPortal:Q5ZJX4 SMR:Q5ZJX4
InParanoid:Q5ZJX4 Uniprot:Q5ZJX4
Length = 215
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 79/210 (37%), Positives = 102/210 (48%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTTFTK+FVGGL + T +R+YFE FGDI EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 7 DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 72 RACDNPNPVIDGRRANCNIASLXXXXXXXXXXXXXXXNI--PYHQQQ--GGAPSYGGVAA 127
RAC +PNP+IDGR+AN N+A L P Q+ G P Y A
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPRSIQTGFTIGVQQLHPAFIQRPFGLTPHYVYPQA 126
Query: 128 SLXXXXXXXXSV--IYQPF-GYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQS 184
+ V I P+ Y + Y + Y Q Y ++P YGY+
Sbjct: 127 IIQPSVVIPTPVQSIASPYIDYTAASQAYSQYTTAAYDQ-YPYAASPAAGFVGYGYT--- 182
Query: 185 PRGAYSAPQAQRMPPSPAGPSYLYYPTQAE 214
GA P P +PA Y P Q +
Sbjct: 183 --GAVQPPITASTPAAPATAFVQYQPQQLQ 210
>TAIR|locus:2077577 [details] [associations]
symbol:AT3G06970 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:DQ446643 IPI:IPI00542567
RefSeq:NP_187353.2 UniGene:At.53209 ProteinModelPortal:Q1PES4
SMR:Q1PES4 EnsemblPlants:AT3G06970.1 GeneID:819882
KEGG:ath:AT3G06970 TAIR:At3g06970 eggNOG:NOG252859
HOGENOM:HOG000124795 InParanoid:Q1PES4 OMA:TNCNLAS
ProtClustDB:CLSN2920257 Genevestigator:Q1PES4 Uniprot:Q1PES4
Length = 317
Score = 267 (99.0 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
Identities = 53/113 (46%), Positives = 68/113 (60%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DT TK+FVG L W T +++RRYFEQFG +++A ++S+ G+SKGYGF+TFRD S
Sbjct: 8 DTRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTV 67
Query: 72 RACDNPNPVIDGRRANCNIASLXXXXXXXXXXXXXXXN--IPYHQQQGGAPSY 122
RA N P+IDGR NCN+AS N IP HQ Q AP +
Sbjct: 68 RALQNSKPIIDGRTTNCNLASAGAKQNMNHPNLNGSFNYVIPPHQYQQ-APQH 119
Score = 42 (19.8 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
Identities = 14/52 (26%), Positives = 18/52 (34%)
Query: 204 PSYLYYPTQAEGIXXXXXXXXXXXXXXXXSSDSQTPQQTSAETEAAREVTSE 255
P Y YYPTQ TP ++S +TE+ E E
Sbjct: 144 PCY-YYPTQMIHNRSDFMTHLAWHQTNRRPVIISTPPRSSVQTESISETDQE 194
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 52/82 (63%), Positives = 65/82 (79%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTTFTK+FVGGL + T +R+YFE FGDI EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 72 RACDNPNPVIDGRRANCNIASL 93
RAC +PNP+IDGR+AN N+A L
Sbjct: 67 RACKDPNPIIDGRKANVNLAYL 88
>WB|WBGene00006321 [details] [associations]
symbol:sup-12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0040012 "regulation of locomotion" evidence=IGI] [GO:0032956
"regulation of actin cytoskeleton organization" evidence=IGI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0036002 "pre-mRNA
binding" evidence=IPI] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0097157 "pre-mRNA
intronic binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0040012 GO:GO:0030529 GO:GO:0032956 GO:GO:0097157
GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 52/82 (63%), Positives = 65/82 (79%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DT FTK+FVGGL + T + + YFEQFGDI EAV+I+D+NT KS+GYGFVT +D SA
Sbjct: 31 DTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAE 90
Query: 72 RACDNPNPVIDGRRANCNIASL 93
RAC +PNP+IDGR+AN N+A L
Sbjct: 91 RACKDPNPIIDGRKANVNLAYL 112
>UNIPROTKB|O45189 [details] [associations]
symbol:sup-12 "Protein SUP-12, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0040012 GO:GO:0030529 GO:GO:0032956
GO:GO:0097157 GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 52/82 (63%), Positives = 65/82 (79%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DT FTK+FVGGL + T + + YFEQFGDI EAV+I+D+NT KS+GYGFVT +D SA
Sbjct: 31 DTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAE 90
Query: 72 RACDNPNPVIDGRRANCNIASL 93
RAC +PNP+IDGR+AN N+A L
Sbjct: 91 RACKDPNPIIDGRKANVNLAYL 112
>UNIPROTKB|A5GFN7 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
ArrayExpress:A5GFN7 Uniprot:A5GFN7
Length = 193
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 52/82 (63%), Positives = 64/82 (78%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTTFTK+FVGGL + T +R+YFE FGDI EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89
Query: 72 RACDNPNPVIDGRRANCNIASL 93
RAC +PNP IDGR+AN N+A L
Sbjct: 90 RACKDPNPNIDGRKANVNLAYL 111
>TAIR|locus:2164042 [details] [associations]
symbol:AT5G53680 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006457 "protein folding"
evidence=RCA] [GO:0009408 "response to heat" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0042542 "response to hydrogen peroxide" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AB017066
HSSP:Q61474 IPI:IPI00517619 RefSeq:NP_200179.1 UniGene:At.55530
ProteinModelPortal:Q9FI08 SMR:Q9FI08 EnsemblPlants:AT5G53680.1
GeneID:835449 KEGG:ath:AT5G53680 TAIR:At5g53680
HOGENOM:HOG000152479 InParanoid:Q9FI08 PhylomeDB:Q9FI08
ProtClustDB:CLSN2916322 Genevestigator:Q9FI08 Uniprot:Q9FI08
Length = 169
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 45/87 (51%), Positives = 63/87 (72%)
Query: 5 HYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTF 64
H+ F DTTFTK++VGGL W T E + +F++FG+I+ ++ D+ T +S+GYGFVTF
Sbjct: 3 HHHQNF-DTTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTF 61
Query: 65 RDPESARRACDNPNPVIDGRRANCNIA 91
+D ESA RAC +PNP I+GR NC +A
Sbjct: 62 KDAESATRACKDPNPTIEGRITNCKLA 88
>TAIR|locus:2164082 [details] [associations]
symbol:AT5G53720 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:AB017066
HSSP:Q61474 IPI:IPI00526229 RefSeq:NP_200183.1 UniGene:At.55532
ProteinModelPortal:Q9FI04 SMR:Q9FI04 EnsemblPlants:AT5G53720.1
GeneID:835453 KEGG:ath:AT5G53720 TAIR:At5g53720 eggNOG:NOG297705
InParanoid:Q9FI04 OMA:ATRACEN PhylomeDB:Q9FI04
ProtClustDB:CLSN2916326 Genevestigator:Q9FI04 Uniprot:Q9FI04
Length = 100
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 44/78 (56%), Positives = 57/78 (73%)
Query: 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACD 75
TK++V GL W T TE + YFE+FG+I+ A ++ D T +SKG+GFVTFR+ ESA RAC+
Sbjct: 9 TKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACE 68
Query: 76 NPNPVIDGRRANCNIASL 93
NPN IDGR NC +A L
Sbjct: 69 NPNHTIDGRTVNCKLAYL 86
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 187 (70.9 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 32/68 (47%), Positives = 46/68 (67%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL W T E +R YF Q+G++++ VI+ DK+T +S+G+GFV F+DP R D
Sbjct: 12 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTVLDT 71
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 72 KPHNLDGR 79
Score = 117 (46.2 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
K+FVGG+ E+R YF +FG + E V+I D + +G+GF+TF +S +A
Sbjct: 114 KIFVGGIPHNCGEAELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQA 170
Score = 72 (30.4 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 21/54 (38%), Positives = 27/54 (50%)
Query: 151 PDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGP 204
P G+ PQ Y Q G ++ P +GYS +P+G AQ MPP PA P
Sbjct: 273 PTGGFGAPQGYPQQ-GFSTQPQ-----FGYSFGTPQGDQFV--AQGMPPPPATP 318
Score = 43 (20.2 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 20/72 (27%), Positives = 26/72 (36%)
Query: 144 FGYPTYTPDYGYH-QPQYYHQMYGTTS----TPMGSPYYYGYSLQSPRGAYSA--PQAQR 196
FG P P G+ QPQ+ + +GT G P P G A P
Sbjct: 277 FGAPQGYPQQGFSTQPQFGYS-FGTPQGDQFVAQGMPPPPATPGAGPLGFAPATTPSQDL 335
Query: 197 MPPSPAGPSYLY 208
+PA P + Y
Sbjct: 336 SKAAPAQPDFSY 347
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 173 (66.0 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
Identities = 30/68 (44%), Positives = 44/68 (64%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL W T E +R YF Q+G++++ VI+ DK T +S+G+GFV F+DP +
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 61 RPHTLDGR 68
Score = 128 (50.1 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
K+FVGG+ E+R YF++FG + E V+I D + +G+GF+TF D +S +A
Sbjct: 104 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 160
Score = 83 (34.3 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
Identities = 24/69 (34%), Positives = 31/69 (44%)
Query: 143 PFG-YPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSP 201
PF Y TP G+ PQ + Q YGT P P+ +GY P AP PP+
Sbjct: 251 PFASYIVSTPPGGFPPPQGFPQGYGTP--P---PFTFGYGAPPPPPDQFAPPGVPPPPAT 305
Query: 202 AGPSYLYYP 210
G + L +P
Sbjct: 306 PGAAPLAFP 314
Score = 42 (19.8 bits), Expect = 7.3e-15, Sum P(2) = 7.3e-15
Identities = 13/49 (26%), Positives = 18/49 (36%)
Query: 157 QPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGPS 205
QP++ + +G G + Q P Y P Q PAG S
Sbjct: 333 QPEFPYSQFGYGQDLSGFGQGFSDPSQQPP-PYGGPSVQPSSGPPAGGS 380
Score = 38 (18.4 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 171 PMGSPYYYGYSLQSPRGAYSAPQ 193
P P + Y + +P G + PQ
Sbjct: 246 PPPPPPFASYIVSTPPGGFPPPQ 268
Score = 37 (18.1 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 17/63 (26%), Positives = 23/63 (36%)
Query: 147 PTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGP-- 204
P+ + P + Q YG P G G ++ G Y P R P P P
Sbjct: 202 PSAANGWAGQPPPTWQQGYG----PQGMWVPAGQAI----GGYGPPPPGRGAPPPPPPFA 253
Query: 205 SYL 207
SY+
Sbjct: 254 SYI 256
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 191 (72.3 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+WET E + RYF +FGDI++ V++ + +G+S+G+GFVTF DP + N
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 77 PNPVIDGRRAN---CNIASL 93
+DGR + CN +L
Sbjct: 68 GPHTLDGRTIDPKPCNPRTL 87
Score = 116 (45.9 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
KVF+GGL ++R +F ++G + E VI+ D+ KS+G+GF++F + S +
Sbjct: 97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE 156
Query: 77 PNPVIDGRR 85
++G++
Sbjct: 157 RYINLNGKQ 165
Score = 61 (26.5 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 24/66 (36%), Positives = 31/66 (46%)
Query: 143 PFGYPTYTPDY-GYHQPQYY--HQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPP 199
P G P +Y G Q Q Y + MY +TST G+P P G S + MPP
Sbjct: 267 PQGPPPQWSNYAGPQQTQGYGGYDMYNSTST--GAP-------SGPSGGGSW-NSWNMPP 316
Query: 200 SPAGPS 205
+ AGP+
Sbjct: 317 NSAGPT 322
Score = 55 (24.4 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 26/77 (33%), Positives = 31/77 (40%)
Query: 143 PFGYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPA 202
P G P P Y Q +GT+ P Y YG S P G+Y Q PP P
Sbjct: 226 PIGAPNMMPGY---------QGWGTS--PQQQQYGYGNS--GP-GSY---QGWGAPPGPQ 268
Query: 203 GP--SYLYY--PTQAEG 215
GP + Y P Q +G
Sbjct: 269 GPPPQWSNYAGPQQTQG 285
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 176 (67.0 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 28/68 (41%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+W+T ++++ YF +FG++++ I D NTG+S+G+GF+ F+D S + D
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 61 KEHRLDGR 68
Score = 129 (50.5 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 42/155 (27%), Positives = 67/155 (43%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIIS-DKNTGKSKGYGFVTFRDPESARRACD 75
K+FVGGL E E++R YF +FG+I EA+ + D + K +G+ F+TF++ E ++ +
Sbjct: 85 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 143
Query: 76 NPNPVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQGGAPSYGGVAASLXXXXXX 135
I G + C + + + ++G S GG +
Sbjct: 144 KKFHTISGSK-RCGLG-VGLPLQLMTQRWFLSVSRCERDKKGNRGSGGGGGSGSQSQSWN 201
Query: 136 XXSVIY--QPFGYPT-YTPDYG-YHQPQYYHQMYG 166
Y Q +GY Y P YG Y Y + YG
Sbjct: 202 QGYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYGYG 236
Score = 59 (25.8 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 18/49 (36%), Positives = 19/49 (38%)
Query: 109 NIPYHQQQGGAPSYGGVAASLXXXXXXXXSVIYQPFGYPTYTPDYGYHQ 157
N Y QQG P YGG Y P+GY Y P Y Y Q
Sbjct: 209 NQGYGYQQGYGPGYGGYD--------------YSPYGYYGYGPGYDYSQ 243
Score = 50 (22.7 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 17/38 (44%), Positives = 17/38 (44%)
Query: 145 GYPTY-TPDYGYHQPQYYHQMYGTTSTPMGSPY-YYGY 180
GY Y YGY Q Y YG SPY YYGY
Sbjct: 203 GYGNYWNQGYGYQQG--YGPGYGGYDY---SPYGYYGY 235
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 173 (66.0 bits), Expect = 8.7e-18, Sum P(2) = 8.7e-18
Identities = 30/68 (44%), Positives = 44/68 (64%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL W T E +R YF Q+G++++ VI+ DK T +S+G+GFV F+DP +
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 61 RPHTLDGR 68
Score = 128 (50.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
K+FVGG+ E+R YF++FG + E V+I D + +G+GF+TF D +S +A
Sbjct: 104 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 160
Score = 70 (29.7 bits), Expect = 8.7e-18, Sum P(2) = 8.7e-18
Identities = 23/69 (33%), Positives = 30/69 (43%)
Query: 143 PF-GYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSP 201
PF Y TP G+ PQ + Q YG + P S +GY P AP PP+
Sbjct: 251 PFTSYIVSTPPGGFPPPQGFPQGYG--APPQFS---FGYGPPPPPPDQFAPPGVPPPPAT 305
Query: 202 AGPSYLYYP 210
G + L +P
Sbjct: 306 PGAAPLAFP 314
Score = 55 (24.4 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 174 SPYYYGYSLQSPRGAYSAPQAQRMPPSPAGPS 205
S Y YG L S +S P Q PPS GPS
Sbjct: 337 SQYGYGQDLASFGQGFSDPSQQ--PPSYGGPS 366
Score = 43 (20.2 bits), Expect = 5.6e-15, Sum P(2) = 5.6e-15
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 147 PTYTPDYGYHQPQYYHQM--YGTT-STPMGSPYYYG 179
PT PD+ Y Q Y + +G S P P YG
Sbjct: 328 PTAQPDFPYSQYGYGQDLASFGQGFSDPSQQPPSYG 363
Score = 41 (19.5 bits), Expect = 9.0e-15, Sum P(2) = 9.0e-15
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 158 PQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGP--SYL 207
P + Q YG P G G ++ G Y P A R P P P SY+
Sbjct: 213 PPTWQQGYG----PQGMWVPAGQAI----GGYGPPPAGRGAPPPPPPFTSYI 256
Score = 38 (18.4 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 171 PMGSPYYYGYSLQSPRGAYSAPQ 193
P P + Y + +P G + PQ
Sbjct: 246 PPPPPPFTSYIVSTPPGGFPPPQ 268
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 173 (66.0 bits), Expect = 9.7e-18, Sum P(2) = 9.7e-18
Identities = 30/68 (44%), Positives = 44/68 (64%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL W T E +R YF Q+G++++ VI+ DK T +S+G+GFV F+DP +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 71 RPHTLDGR 78
Score = 128 (50.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
K+FVGG+ E+R YF++FG + E V+I D + +G+GF+TF D +S +A
Sbjct: 113 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 169
Score = 70 (29.7 bits), Expect = 9.7e-18, Sum P(2) = 9.7e-18
Identities = 23/69 (33%), Positives = 30/69 (43%)
Query: 143 PF-GYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSP 201
PF Y TP G+ PQ + Q YG + P S +GY P AP PP+
Sbjct: 260 PFTSYIVSTPPGGFPPPQGFPQGYG--APPQFS---FGYGPPPPPPDQFAPPGVPPPPAT 314
Query: 202 AGPSYLYYP 210
G + L +P
Sbjct: 315 PGAAPLAFP 323
Score = 52 (23.4 bits), Expect = 7.2e-16, Sum P(2) = 7.2e-16
Identities = 15/35 (42%), Positives = 16/35 (45%)
Query: 171 PMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGPS 205
P G Y YG L +S P Q PPS GPS
Sbjct: 344 PYGQ-YGYGQDLSGFGQGFSDPSQQ--PPSYGGPS 375
Score = 43 (20.2 bits), Expect = 6.2e-15, Sum P(2) = 6.2e-15
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 147 PTYTPDYGYHQPQYYHQMYGTT---STPMGSPYYYG 179
PT PD+ Y Q Y + G S P P YG
Sbjct: 337 PTAQPDFPYGQYGYGQDLSGFGQGFSDPSQQPPSYG 372
Score = 42 (19.8 bits), Expect = 7.9e-15, Sum P(2) = 7.9e-15
Identities = 18/63 (28%), Positives = 24/63 (38%)
Query: 147 PTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGP-- 204
P+ + P + Q YG P G G ++ G Y P A R P P P
Sbjct: 211 PSAANGWAGQPPPTWQQGYG----PQGMWVPAGQAI----GGYGPPPAGRGAPPPPPPFT 262
Query: 205 SYL 207
SY+
Sbjct: 263 SYI 265
Score = 38 (18.4 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 171 PMGSPYYYGYSLQSPRGAYSAPQ 193
P P + Y + +P G + PQ
Sbjct: 255 PPPPPPFTSYIVSTPPGGFPPPQ 277
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 173 (66.0 bits), Expect = 9.8e-18, Sum P(2) = 9.8e-18
Identities = 30/68 (44%), Positives = 44/68 (64%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL W T E +R YF Q+G++++ VI+ DK T +S+G+GFV F+DP +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 71 RPHTLDGR 78
Score = 128 (50.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
K+FVGG+ E+R YF++FG + E V+I D + +G+GF+TF D +S +A
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 170
Score = 70 (29.7 bits), Expect = 9.8e-18, Sum P(2) = 9.8e-18
Identities = 23/69 (33%), Positives = 30/69 (43%)
Query: 143 PF-GYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSP 201
PF Y TP G+ PQ + Q YG + P S +GY P AP PP+
Sbjct: 261 PFTSYIVSTPPGGFPPPQGFPQGYG--APPQFS---FGYGPPPPPPDQFAPPGVPPPPAT 315
Query: 202 AGPSYLYYP 210
G + L +P
Sbjct: 316 PGAAPLAFP 324
Score = 52 (23.4 bits), Expect = 7.3e-16, Sum P(2) = 7.3e-16
Identities = 15/35 (42%), Positives = 16/35 (45%)
Query: 171 PMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGPS 205
P G Y YG L +S P Q PPS GPS
Sbjct: 345 PYGQ-YGYGQDLSGFGQGFSDPSQQ--PPSYGGPS 376
Score = 43 (20.2 bits), Expect = 6.3e-15, Sum P(2) = 6.3e-15
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 147 PTYTPDYGYHQPQYYHQMYGTT---STPMGSPYYYG 179
PT PD+ Y Q Y + G S P P YG
Sbjct: 338 PTAQPDFPYGQYGYGQDLSGFGQGFSDPSQQPPSYG 373
Score = 42 (19.8 bits), Expect = 8.0e-15, Sum P(2) = 8.0e-15
Identities = 18/63 (28%), Positives = 24/63 (38%)
Query: 147 PTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGP-- 204
P+ + P + Q YG P G G ++ G Y P A R P P P
Sbjct: 212 PSAANGWAGQPPPTWQQGYG----PQGMWVPAGQAI----GGYGPPPAGRGAPPPPPPFT 263
Query: 205 SYL 207
SY+
Sbjct: 264 SYI 266
Score = 38 (18.4 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 171 PMGSPYYYGYSLQSPRGAYSAPQ 193
P P + Y + +P G + PQ
Sbjct: 256 PPPPPPFTSYIVSTPPGGFPPPQ 278
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 173 (66.0 bits), Expect = 9.8e-18, Sum P(2) = 9.8e-18
Identities = 30/68 (44%), Positives = 44/68 (64%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL W T E +R YF Q+G++++ VI+ DK T +S+G+GFV F+DP +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 71 RPHTLDGR 78
Score = 128 (50.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
K+FVGG+ E+R YF++FG + E V+I D + +G+GF+TF D +S +A
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 170
Score = 70 (29.7 bits), Expect = 9.8e-18, Sum P(2) = 9.8e-18
Identities = 23/69 (33%), Positives = 30/69 (43%)
Query: 143 PF-GYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSP 201
PF Y TP G+ PQ + Q YG + P S +GY P AP PP+
Sbjct: 261 PFTSYIVSTPPGGFPPPQGFPQGYG--APPQFS---FGYGPPPPPPDQFAPPGVPPPPAT 315
Query: 202 AGPSYLYYP 210
G + L +P
Sbjct: 316 PGAAPLAFP 324
Score = 52 (23.4 bits), Expect = 7.3e-16, Sum P(2) = 7.3e-16
Identities = 15/35 (42%), Positives = 16/35 (45%)
Query: 171 PMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGPS 205
P G Y YG L +S P Q PPS GPS
Sbjct: 345 PYGQ-YGYGQDLSGFGQGFSDPSQQ--PPSYGGPS 376
Score = 43 (20.2 bits), Expect = 6.3e-15, Sum P(2) = 6.3e-15
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 147 PTYTPDYGYHQPQYYHQMYGTT---STPMGSPYYYG 179
PT PD+ Y Q Y + G S P P YG
Sbjct: 338 PTAQPDFPYGQYGYGQDLSGFGQGFSDPSQQPPSYG 373
Score = 42 (19.8 bits), Expect = 8.0e-15, Sum P(2) = 8.0e-15
Identities = 18/63 (28%), Positives = 24/63 (38%)
Query: 147 PTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGP-- 204
P+ + P + Q YG P G G ++ G Y P A R P P P
Sbjct: 212 PSAANGWAGQPPPTWQQGYG----PQGMWVPAGQAI----GGYGPPPAGRGAPPPPPPFT 263
Query: 205 SYL 207
SY+
Sbjct: 264 SYI 266
Score = 38 (18.4 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 171 PMGSPYYYGYSLQSPRGAYSAPQ 193
P P + Y + +P G + PQ
Sbjct: 256 PPPPPPFTSYIVSTPPGGFPPPQ 278
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 173 (66.0 bits), Expect = 9.8e-18, Sum P(2) = 9.8e-18
Identities = 30/68 (44%), Positives = 44/68 (64%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL W T E +R YF Q+G++++ VI+ DK T +S+G+GFV F+DP +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 71 RPHTLDGR 78
Score = 128 (50.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
K+FVGG+ E+R YF++FG + E V+I D + +G+GF+TF D +S +A
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 170
Score = 70 (29.7 bits), Expect = 9.8e-18, Sum P(2) = 9.8e-18
Identities = 23/69 (33%), Positives = 30/69 (43%)
Query: 143 PF-GYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSP 201
PF Y TP G+ PQ + Q YG + P S +GY P AP PP+
Sbjct: 261 PFTSYIVSTPPGGFPPPQGFPQGYG--APPQFS---FGYGPPPPPPDQFAPPGVPPPPAT 315
Query: 202 AGPSYLYYP 210
G + L +P
Sbjct: 316 PGAAPLAFP 324
Score = 51 (23.0 bits), Expect = 9.3e-16, Sum P(2) = 9.3e-16
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 174 SPYYYGYSLQSPRGAYSAPQAQRMPPSPAGPS 205
S Y YG L +S P Q PPS GPS
Sbjct: 347 SQYGYGQDLAGFGQGFSDPSQQ--PPSYGGPS 376
Score = 44 (20.5 bits), Expect = 4.9e-15, Sum P(2) = 4.9e-15
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 147 PTYTPDYGYHQPQYYHQMYGTT---STPMGSPYYYG 179
PT PD+ Y Q Y + G S P P YG
Sbjct: 338 PTAQPDFPYSQYGYGQDLAGFGQGFSDPSQQPPSYG 373
Score = 41 (19.5 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 158 PQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGP--SYL 207
P + Q YG P G G ++ G Y P A R P P P SY+
Sbjct: 223 PPTWQQGYG----PQGMWVPAGQAI----GGYGPPPAGRGAPPPPPPFTSYI 266
Score = 38 (18.4 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 171 PMGSPYYYGYSLQSPRGAYSAPQ 193
P P + Y + +P G + PQ
Sbjct: 256 PPPPPPFTSYIVSTPPGGFPPPQ 278
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 173 (66.0 bits), Expect = 9.9e-18, Sum P(2) = 9.9e-18
Identities = 30/68 (44%), Positives = 44/68 (64%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL W T E +R YF Q+G++++ VI+ DK T +S+G+GFV F+DP +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 71 RPHTLDGR 78
Score = 128 (50.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
K+FVGG+ E+R YF++FG + E V+I D + +G+GF+TF D +S +A
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 170
Score = 70 (29.7 bits), Expect = 9.9e-18, Sum P(2) = 9.9e-18
Identities = 23/69 (33%), Positives = 30/69 (43%)
Query: 143 PF-GYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSP 201
PF Y TP G+ PQ + Q YG + P S +GY P AP PP+
Sbjct: 261 PFTSYIVSTPPGGFPPPQGFPQGYG--APPQFS---FGYGPPPPPPDQFAPPGVPPPPAT 315
Query: 202 AGPSYLYYP 210
G + L +P
Sbjct: 316 PGAAPLAFP 324
Score = 49 (22.3 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 14/35 (40%), Positives = 15/35 (42%)
Query: 171 PMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGPS 205
P G YG L +S P Q PPS GPS
Sbjct: 345 PYGQYAGYGQDLSGFGQGFSDPSQQ--PPSYGGPS 377
Score = 41 (19.5 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 158 PQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGP--SYL 207
P + Q YG P G G ++ G Y P A R P P P SY+
Sbjct: 223 PPTWQQGYG----PQGMWVPAGQAI----GGYGPPPAGRGAPPPPPPFTSYI 266
Score = 38 (18.4 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 171 PMGSPYYYGYSLQSPRGAYSAPQ 193
P P + Y + +P G + PQ
Sbjct: 256 PPPPPPFTSYIVSTPPGGFPPPQ 278
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 173 (66.0 bits), Expect = 9.9e-18, Sum P(2) = 9.9e-18
Identities = 30/68 (44%), Positives = 44/68 (64%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL W T E +R YF Q+G++++ VI+ DK T +S+G+GFV F+DP +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 71 RPHTLDGR 78
Score = 128 (50.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
K+FVGG+ E+R YF++FG + E V+I D + +G+GF+TF D +S +A
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 170
Score = 70 (29.7 bits), Expect = 9.9e-18, Sum P(2) = 9.9e-18
Identities = 23/69 (33%), Positives = 30/69 (43%)
Query: 143 PF-GYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSP 201
PF Y TP G+ PQ + Q YG + P S +GY P AP PP+
Sbjct: 261 PFTSYIVSTPPGGFPPPQGFPQGYG--APPQFS---FGYGPPPPPPDQFAPPGVPPPPAT 315
Query: 202 AGPSYLYYP 210
G + L +P
Sbjct: 316 PGAAPLAFP 324
Score = 43 (20.2 bits), Expect = 6.4e-15, Sum P(2) = 6.4e-15
Identities = 18/59 (30%), Positives = 20/59 (33%)
Query: 147 PTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGPS 205
PT PD+ Y Q Y Q P S Q P +Y P PAG S
Sbjct: 338 PTAQPDFPYSQYAGYGQDLAGFGQGFSDP-----SQQPP--SYGGPSVPGSGGPPAGGS 389
Score = 41 (19.5 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 158 PQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGP--SYL 207
P + Q YG P G G ++ G Y P A R P P P SY+
Sbjct: 223 PPTWQQGYG----PQGMWVPAGQAI----GGYGPPPAGRGAPPPPPPFTSYI 266
Score = 38 (18.4 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 171 PMGSPYYYGYSLQSPRGAYSAPQ 193
P P + Y + +P G + PQ
Sbjct: 256 PPPPPPFTSYIVSTPPGGFPPPQ 278
>UNIPROTKB|E2RM01 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002308 EMBL:AAEX03017572 EMBL:AAEX03017571
Ensembl:ENSCAFT00000015807 Uniprot:E2RM01
Length = 116
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 41/82 (50%), Positives = 54/82 (65%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTT+TK+FVGGL + T +R+YFE FG+I EAV+I+ VT D +A
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITXXXXXXXXXVAKVTMADRAAAE 66
Query: 72 RACDNPNPVIDGRRANCNIASL 93
RAC +PNP+IDGR+AN N+A L
Sbjct: 67 RACKDPNPIIDGRKANVNLAYL 88
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 176 (67.0 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 28/68 (41%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+W+T ++++ YF +FG++++ I D NTG+S+G+GF+ F+D S + D
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 130 KEHRLDGR 137
Score = 146 (56.5 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 45/155 (29%), Positives = 69/155 (44%)
Query: 17 KVFVGGLAWETPTEE-MRRYFEQFGDILEAVIIS-DKNTGKSKGYGFVTFRDPESARRAC 74
K+FVGGL E+PTEE +R YF +FG+I EA+ + D K +G+ F+TF++ E ++
Sbjct: 154 KIFVGGLNPESPTEEKIREYFGEFGEI-EAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 212
Query: 75 DNPNPVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPY-HQQQGGAPSYGGVAASLXXXX 133
+ + G + +A N ++ GG GG + S
Sbjct: 213 EKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGY 272
Query: 134 XXXXSVIYQPFGYPT-YTPDYG-YHQPQYYHQMYG 166
+ Q +GY Y P YG Y Y + YG
Sbjct: 273 GNYWN---QGYGYQQGYGPGYGGYDYSPYGYYGYG 304
Score = 59 (25.8 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 18/49 (36%), Positives = 19/49 (38%)
Query: 109 NIPYHQQQGGAPSYGGVAASLXXXXXXXXSVIYQPFGYPTYTPDYGYHQ 157
N Y QQG P YGG Y P+GY Y P Y Y Q
Sbjct: 277 NQGYGYQQGYGPGYGGYD--------------YSPYGYYGYGPGYDYSQ 311
Score = 50 (22.7 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 17/38 (44%), Positives = 17/38 (44%)
Query: 145 GYPTY-TPDYGYHQPQYYHQMYGTTSTPMGSPY-YYGY 180
GY Y YGY Q Y YG SPY YYGY
Sbjct: 271 GYGNYWNQGYGYQQG--YGPGYGGYDY---SPYGYYGY 303
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 176 (67.0 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 29/75 (38%), Positives = 49/75 (65%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T + +R YF +FG+I E +++ D T +S+G+GFVTF DP S +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 77 PNPVIDGRRANCNIA 91
P+ +D + + +A
Sbjct: 82 PHHELDSKTIDPKVA 96
Score = 173 (66.0 bits), Expect = 9.6e-13, P = 9.6e-13
Identities = 47/167 (28%), Positives = 75/167 (44%)
Query: 1 MAYPHYRSQFGDTTFTK-VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGY 59
+A+P R+Q T TK +FVGGL+ T E++++YFEQFG + +A+++ DK T + +G+
Sbjct: 95 VAFPR-RAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGF 153
Query: 60 GFVTFRDPESARRACDNPNPVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQGGA 119
GFVTF + + + C+ I+ + C A +PY
Sbjct: 154 GFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ-PKEVMFPPGTRGRARGLPY------- 205
Query: 120 PSYGGVAASLXXXXXXXXSVIYQPFGYPTYTPDYGYHQPQYYHQMYG 166
+ + Y GYP + P YGY P + YG
Sbjct: 206 -TMDAFMLGMGMLGYPNFVATYGR-GYPGFAPSYGYQFPGFPAAAYG 250
Score = 51 (23.0 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 21/80 (26%), Positives = 29/80 (36%)
Query: 112 YHQQQGGAPS--YGGVAASLXXXXXXXXSVIYQPFGYPTYTPDYGYHQPQYYHQMYGTTS 169
Y Q G P+ YG VAA+ S +P G+P G + P +YG S
Sbjct: 237 YGYQFPGFPAAAYGPVAAAAVAAARGSGSNPARPGGFP------GANSPGPVADLYGPAS 290
Query: 170 TPMGSPYYYGYSLQSPRGAY 189
G Y + P +
Sbjct: 291 QDSGVGNYISAASPQPGSGF 310
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 177 (67.4 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 28/68 (41%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+W+T ++++ YF +FG++++ I D NTG+S+G+GF+ F+D S + D
Sbjct: 75 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 134
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 135 KEHRLDGR 142
Score = 136 (52.9 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 42/153 (27%), Positives = 66/153 (43%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIIS-DKNTGKSKGYGFVTFRDPESARRACD 75
K+FVGGL E E++R YF QFG+I EA+ + D K +G+ F+TF++ + ++ +
Sbjct: 159 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 217
Query: 76 NPNPVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQGGAPSYGGVAASLXXXXXX 135
+ G + +A N + +G S GG + S
Sbjct: 218 KKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGN----RNRGNRGSGGGQSQSWNQGYGN 273
Query: 136 XXSVIYQPFGYPT-YTPDYG-YHQPQYYHQMYG 166
+ Q +GY Y P YG Y Y + YG
Sbjct: 274 YWN---QGYGYQQGYGPGYGGYDYSPYGYYGYG 303
Score = 50 (22.7 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 17/38 (44%), Positives = 17/38 (44%)
Query: 145 GYPTY-TPDYGYHQPQYYHQMYGTTSTPMGSPY-YYGY 180
GY Y YGY Q Y YG SPY YYGY
Sbjct: 270 GYGNYWNQGYGYQQG--YGPGYGGYDY---SPYGYYGY 302
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 177 (67.4 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 28/68 (41%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+W+T ++++ YF +FG++++ I D NTG+S+G+GF+ F+D S + D
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 136 KEHRLDGR 143
Score = 136 (52.9 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 42/153 (27%), Positives = 66/153 (43%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIIS-DKNTGKSKGYGFVTFRDPESARRACD 75
K+FVGGL E E++R YF QFG+I EA+ + D K +G+ F+TF++ + ++ +
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 76 NPNPVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQGGAPSYGGVAASLXXXXXX 135
+ G + +A N + +G S GG + S
Sbjct: 219 KKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGN----RNRGNRGSGGGQSQSWNQGYGN 274
Query: 136 XXSVIYQPFGYPT-YTPDYG-YHQPQYYHQMYG 166
+ Q +GY Y P YG Y Y + YG
Sbjct: 275 YWN---QGYGYQQGYGPGYGGYDYSPYGYYGYG 304
Score = 50 (22.7 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 17/38 (44%), Positives = 17/38 (44%)
Query: 145 GYPTY-TPDYGYHQPQYYHQMYGTTSTPMGSPY-YYGY 180
GY Y YGY Q Y YG SPY YYGY
Sbjct: 271 GYGNYWNQGYGYQQG--YGPGYGGYDY---SPYGYYGY 303
>TAIR|locus:2055951 [details] [associations]
symbol:AT2G22100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007232
HSSP:Q14103 ProtClustDB:CLSN2914947 IPI:IPI00529413 PIR:A84609
RefSeq:NP_565526.1 UniGene:At.39482 ProteinModelPortal:Q9SHZ5
SMR:Q9SHZ5 EnsemblPlants:AT2G22100.1 GeneID:816745
KEGG:ath:AT2G22100 TAIR:At2g22100 InParanoid:Q9SHZ5 OMA:VFESADR
PhylomeDB:Q9SHZ5 ArrayExpress:Q9SHZ5 Genevestigator:Q9SHZ5
Uniprot:Q9SHZ5
Length = 382
Score = 170 (64.9 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 6 YRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFR 65
+ S D++ +FV GL W+T E ++ FE +G+I E ++ DK+TG++KG+GFV F+
Sbjct: 153 FESADRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFK 212
Query: 66 DPESARRACDNPNPVIDGRRANC 88
+ AR A NP + R +C
Sbjct: 213 TRKGARAALKNPEKRMYNRTVSC 235
Score = 61 (26.5 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 151 PDYGYHQPQY-YHQMYGTTSTPMGSPYYYGYSLQSPR--GAYSAPQAQRMPPSPAG 203
P YG+ QP ++ MYG MG+P G LQ+ R G+ Q MPP+ G
Sbjct: 299 PFYGHSQPPPGFNPMYGAM---MGNPMVAG--LQNYRMFGSGMMNQGPMMPPNHMG 349
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 176 (67.0 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 28/68 (41%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+W+T ++++ YF +FG++++ I D NTG+S+G+GF+ F+D S + D
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 131 KEHRLDGR 138
Score = 136 (52.9 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 42/153 (27%), Positives = 66/153 (43%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIIS-DKNTGKSKGYGFVTFRDPESARRACD 75
K+FVGGL E E++R YF +FG+I EA+ + D K +G+ F+TF++ E ++ +
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 76 NPNPVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQGGAPSYGGVAASLXXXXXX 135
+ G + +A N + +G S GG + S
Sbjct: 214 KKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGN----RNRGNRGSGGGQSQSWNQGYGN 269
Query: 136 XXSVIYQPFGYPT-YTPDYG-YHQPQYYHQMYG 166
+ Q +GY Y P YG Y Y + YG
Sbjct: 270 YWN---QGYGYQQGYGPGYGGYDYSPYGYYGYG 299
Score = 50 (22.7 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 17/38 (44%), Positives = 17/38 (44%)
Query: 145 GYPTY-TPDYGYHQPQYYHQMYGTTSTPMGSPY-YYGY 180
GY Y YGY Q Y YG SPY YYGY
Sbjct: 266 GYGNYWNQGYGYQQG--YGPGYGGYDY---SPYGYYGY 298
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 173 (66.0 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 27/68 (39%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+W+T ++++ YF +FG++ + I D NTG+S+G+GF+ F++P S + +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 61 KEHRLDGR 68
Score = 136 (52.9 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 52/171 (30%), Positives = 73/171 (42%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIIS-DKNTGKSKGYGFVTFRDPESARRACD 75
K+FVGGL E E++R YF +FG+I EA+ + D T K +G+ F+TF++ + ++ +
Sbjct: 85 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
Query: 76 NPNPVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQ----GGAPSYGGVAASLXX 131
+ G + +A Y QQQ GG SYGG
Sbjct: 144 KKFHNVSGSKCEIKVAQPKEV---------------YQQQQFSSGGGRGSYGGRGRG--- 185
Query: 132 XXXXXXSVIYQPFGYPTYTPDYGYHQPQY-YHQMYGTTSTPMGSPY-YYGY 180
S + GY Y + GY Y Y Q YG S Y YYGY
Sbjct: 186 GRGGAQSQNWNQ-GYGNYW-NQGYGNQGYGYQQGYGGYGGYDYSGYGYYGY 234
Score = 44 (20.5 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 141 YQPFGYPTYTPDYGYHQ 157
Y +GY Y P Y Y Q
Sbjct: 226 YSGYGYYGYGPGYDYSQ 242
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 177 (67.4 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 34/82 (41%), Positives = 53/82 (64%)
Query: 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESA 70
GD + + FVGGLAW T + F Q+GD++++ II+D+ TG+S+G+GFVTF+D ++
Sbjct: 4 GDVEY-RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAM 62
Query: 71 RRACDNPNPV-IDGRRANCNIA 91
+ A + N +DGR N A
Sbjct: 63 KDAIEGMNGQDLDGRSITVNEA 84
Score = 38 (18.4 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 112 YHQQQGGAPSYGG 124
Y + GG SYGG
Sbjct: 138 YSSRGGGGGSYGG 150
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 175 (66.7 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
Identities = 29/72 (40%), Positives = 49/72 (68%)
Query: 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARR 72
T K+FVGGL+W+T ++++ YF +FG++ + I D NTG+S+G+GF+ F+D ES +
Sbjct: 61 TEGVKMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDK 120
Query: 73 ACDNPNPVIDGR 84
++ +DGR
Sbjct: 121 VLEHKEHRLDGR 132
Score = 125 (49.1 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIIS-DKNTGKSKGYGFVTFRDPESARRACD 75
K+FVGGL E +++R YFE FG+I EA+ + D T K +G+ F+TF++ + ++ +
Sbjct: 149 KIFVGGLNPEAGEDQIREYFETFGEI-EAIELPMDPKTNKRRGFVFITFKEEDPVKKILE 207
Query: 76 NPNPVIDGRRANCNIA 91
+ G + IA
Sbjct: 208 KKFHNVSGSKCEIKIA 223
Score = 47 (21.6 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
Identities = 14/46 (30%), Positives = 16/46 (34%)
Query: 112 YHQQQGGAPSYGGVAASLXXXXXXXXSVIYQPFGYPTYTPDYGYHQ 157
Y Q G YGG + Y +GY Y P Y Y Q
Sbjct: 261 YWNQGYGNQGYGGYGQQ---GYGGYGNYDYSGYGYYGYGPGYDYSQ 303
Score = 40 (19.1 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 16/55 (29%), Positives = 20/55 (36%)
Query: 154 GYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGPSYLY 208
G Q Q ++Q Y + G+ Y GY Q G Y GP Y Y
Sbjct: 248 GKGQGQNWNQGYNYWNQGYGNQGYGGYGQQG-YGGYGNYDYSGYGYYGYGPGYDY 301
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 176 (67.0 bits), Expect = 7.6e-16, Sum P(2) = 7.6e-16
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 8 SQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDP 67
+Q GD K+FVGGL W T E +R YF Q+G++++ VI+ DK T +S+G+GFV F+DP
Sbjct: 3 NQGGDE-IGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Query: 68 ESARRACDNPNPVIDGR 84
+ +DGR
Sbjct: 62 NCVGTVLASRPHTLDGR 78
Score = 124 (48.7 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
K+FVGG+ E++ YF +FG + E V+I D + +G+GF+TF D +S +A
Sbjct: 115 KIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 171
Score = 46 (21.3 bits), Expect = 7.6e-16, Sum P(2) = 7.6e-16
Identities = 20/70 (28%), Positives = 27/70 (38%)
Query: 141 YQPFGYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPS 200
+ PF T TP + PQ + Y +TP P+ YGY P PP
Sbjct: 261 FAPFLVST-TPG-PFPPPQGFPPGY---ATP--PPFGYGYGPPPPPPDQFVSSGVPPPPG 313
Query: 201 PAGPSYLYYP 210
G + L +P
Sbjct: 314 TPGAAPLAFP 323
Score = 38 (18.4 bits), Expect = 5.1e-15, Sum P(2) = 5.1e-15
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 164 MYGTTSTPMGSP--YYYGYSLQS---PRG----AYSAPQAQRMPPSPAGPSY 206
M T + G P + GYS Q P G Y P + PP P PS+
Sbjct: 212 MQSTANGWTGQPPQTWQGYSPQGMWMPTGQTIGGYGQPAGRGGPPPP--PSF 261
>TAIR|locus:2086325 [details] [associations]
symbol:AT3G15010 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009693
GO:GO:0006952 GO:GO:0005730 GO:GO:0000166 GO:GO:0008219
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150 EMBL:AP000370
HSSP:P09651 KO:K12741 eggNOG:NOG300400 EMBL:AY063846 EMBL:AY091228
EMBL:AK316731 IPI:IPI00519744 RefSeq:NP_188119.1 RefSeq:NP_974317.1
UniGene:At.27179 ProteinModelPortal:Q9LKA4 SMR:Q9LKA4 IntAct:Q9LKA4
PaxDb:Q9LKA4 PRIDE:Q9LKA4 EnsemblPlants:AT3G15010.1
EnsemblPlants:AT3G15010.2 GeneID:820730 KEGG:ath:AT3G15010
TAIR:At3g15010 HOGENOM:HOG000090575 InParanoid:Q9LKA4 OMA:MGAQYGG
PhylomeDB:Q9LKA4 ProtClustDB:CLSN2685088 ArrayExpress:Q9LKA4
Genevestigator:Q9LKA4 Uniprot:Q9LKA4
Length = 404
Score = 181 (68.8 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 37/73 (50%), Positives = 48/73 (65%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
D + K+F+ GLA +T TE +R F +GD+ EA++I DK TGKSKGYGFVTF + A
Sbjct: 71 DISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGAL 130
Query: 72 RACDNPNPVIDGR 84
A P+ IDGR
Sbjct: 131 LALKEPSKKIDGR 143
Score = 156 (60.0 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 28/84 (33%), Positives = 48/84 (57%)
Query: 8 SQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDP 67
SQ D + K++V + ++ P + + +F +GD+ E + DK TGKS+G+ ++
Sbjct: 159 SQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTA 218
Query: 68 ESARRACDNPNPVIDGRRANCNIA 91
E A+ A +P VIDG+ NC +A
Sbjct: 219 EGAQAALADPVKVIDGKHLNCKLA 242
Score = 40 (19.1 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 141 YQPFGYPTYTPDYGYHQPQYYHQMYGTTSTP 171
Y G+ + GY P +HQ GT+ P
Sbjct: 361 YPESGHYGLSSSAGY--PGQHHQAVGTSPVP 389
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
+ FVGGLAW T E+++R F QFGD++++ II+D+ +G+S+G+GFVTF+D ++ R A +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 77 PN-PVIDGRRANCNIA 91
N +DGR N A
Sbjct: 67 MNGKELDGRVITVNEA 82
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 178 (67.7 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 30/68 (44%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GG++W+T E ++ YF FG+++EAVI+ D+ TG+++G+GFV F DP A
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 77 PNPVIDGR 84
+ IDGR
Sbjct: 67 KHN-IDGR 73
Score = 125 (49.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESA 70
K+FVGGL + + YFEQFG + V++ D NT + +G+GF+T+ D E A
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITY-DSEEA 161
Score = 38 (18.4 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 166 GTTSTPMGSPYYYG 179
G + +P+G+ Y YG
Sbjct: 191 GPSRSPLGAGYSYG 204
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 146 (56.5 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL + T + + +F FG I E V++ D T +S+G+GF+TF +PE A A
Sbjct: 7 KLFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRA 66
Query: 77 PN-PVIDGRRANCNIA 91
N +DGR+ + + A
Sbjct: 67 TNGESLDGRQIHVDHA 82
Score = 50 (22.7 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 153 YGYHQPQYYHQMYGTT---STPMGSPYYYGYSLQSPRGA 188
+GY + + HQ YG++ S P G Y YGY G+
Sbjct: 99 HGYSRGRG-HQSYGSSRYDSLPGGYGYGYGYGRSRDYGS 136
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 182 (69.1 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 60/221 (27%), Positives = 96/221 (43%)
Query: 1 MAYPHYRSQFGDTTFTK-VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGY 59
+A+P R+Q T TK +FVGGL+ T E++++YFEQFG + +A+++ DK T + +G+
Sbjct: 95 VAFPR-RAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGF 153
Query: 60 GFVTFRDPESARRACDNPNPVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQ--- 116
GFVTF + + + C+ I+ + C A +PY
Sbjct: 154 GFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ-PKEVMFPPGTRGRARGLPYTMDAFML 212
Query: 117 G-GAPSYGGVAASLXXXXXXXXSVIYQPFGYPTYTPDYGYHQPQYYHQMYGTTSTPMGSP 175
G G SY + A+ GY + P Y Y P + YG +
Sbjct: 213 GMGMLSYPNIVATYGR-------------GYTGFAPSYSYQFPGFPATAYGPVAAAAAVA 259
Query: 176 YYYGYSLQSP-RGAYSA-PQAQRMPPSPAGPSYLYYPTQAE 214
G + RG Y+A PQ+ P P Y +Y + ++
Sbjct: 260 AARGSGRGARGRGGYAAYPQST----GPGFPDYGFYSSPSD 296
Score = 167 (63.8 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 28/75 (37%), Positives = 48/75 (64%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T + +R YF +FG+I E +++ D T +S+G+GFVTF D S +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLAQ 81
Query: 77 PNPVIDGRRANCNIA 91
P+ +D + + +A
Sbjct: 82 PHHELDSKTIDPKVA 96
Score = 42 (19.8 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 187 GAYSAPQAQRMPP 199
G YS+P QR PP
Sbjct: 289 GFYSSPSDQRGPP 301
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 185 (70.2 bits), Expect = 4.0e-14, P = 4.0e-14
Identities = 58/209 (27%), Positives = 89/209 (42%)
Query: 1 MAYPHYRSQFGDTTFTK-VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGY 59
+A+P R+Q T TK +FVGGL+ T E++++YFEQFG + +A+++ DK T + +G+
Sbjct: 73 VAFPR-RAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGF 131
Query: 60 GFVTFRDPESARRACDNPNPVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQGGA 119
GFVTF + + + C+ I+ + C A +PY
Sbjct: 132 GFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ-PKEVMFPPGTRGRARGLPY------- 183
Query: 120 PSYGGVAASLXXXXXXXXSVIYQPFGYPTYTPDYGYHQPQYYHQMYG-----TTSTPMGS 174
+ + Y GYP + P YGY P + YG + GS
Sbjct: 184 -TMDAFMLGMGMLGYPNFVATYGR-GYPGFAPSYGYQFPGFPAAAYGPVAAAAVAAARGS 241
Query: 175 PYYYGYSLQSPRGAYSAPQAQRMPPSPAG 203
YS Q GA ++P P P G
Sbjct: 242 -VLNSYSAQPNFGAPASPAGSN-PARPGG 268
Score = 171 (65.3 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 18 VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP 77
+F+GGL+W+T + +R YF +FG+I E +++ D T +S+G+GFVTF DP S + P
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 78 NPVIDGRRANCNIA 91
+ +D + + +A
Sbjct: 61 HHELDSKTIDPKVA 74
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 185 (70.2 bits), Expect = 5.2e-14, P = 5.2e-14
Identities = 58/209 (27%), Positives = 89/209 (42%)
Query: 1 MAYPHYRSQFGDTTFTK-VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGY 59
+A+P R+Q T TK +FVGGL+ T E++++YFEQFG + +A+++ DK T + +G+
Sbjct: 95 VAFPR-RAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGF 153
Query: 60 GFVTFRDPESARRACDNPNPVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQGGA 119
GFVTF + + + C+ I+ + C A +PY
Sbjct: 154 GFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ-PKEVMFPPGTRGRARGLPY------- 205
Query: 120 PSYGGVAASLXXXXXXXXSVIYQPFGYPTYTPDYGYHQPQYYHQMYG-----TTSTPMGS 174
+ + Y GYP + P YGY P + YG + GS
Sbjct: 206 -TMDAFMLGMGMLGYPNFVATYGR-GYPGFAPSYGYQFPGFPAAAYGPVAAAAVAAARGS 263
Query: 175 PYYYGYSLQSPRGAYSAPQAQRMPPSPAG 203
YS Q GA ++P P P G
Sbjct: 264 -VLNSYSAQPNFGAPASPAGSN-PARPGG 290
Score = 176 (67.0 bits), Expect = 5.3e-13, P = 5.3e-13
Identities = 29/75 (38%), Positives = 49/75 (65%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T + +R YF +FG+I E +++ D T +S+G+GFVTF DP S +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 77 PNPVIDGRRANCNIA 91
P+ +D + + +A
Sbjct: 82 PHHELDSKTIDPKVA 96
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 169 (64.5 bits), Expect = 5.6e-14, Sum P(2) = 5.6e-14
Identities = 27/75 (36%), Positives = 48/75 (64%)
Query: 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESA 70
G+ K+FVGGL+W+T ++++ YF +FG++ + I D NTG+S+G+GF+ F++P
Sbjct: 90 GEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGV 149
Query: 71 RRACDNPNPVIDGRR 85
+ +DGR+
Sbjct: 150 DKVLAQKEHRLDGRQ 164
Score = 119 (46.9 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL ET E +R YF FG+I + D + K +G+ F+TF++ E+ ++ +
Sbjct: 180 KIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKKILEK 239
Query: 77 PNPVIDGRR 85
+ G +
Sbjct: 240 KYHNVSGTK 248
Score = 36 (17.7 bits), Expect = 5.6e-14, Sum P(2) = 5.6e-14
Identities = 11/35 (31%), Positives = 12/35 (34%)
Query: 155 YHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAY 189
Y Y +Q YG G Y GY G Y
Sbjct: 300 YWNQGYGNQGYGGYGGQQGYGGYGGYGNYDYSGGY 334
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 162 (62.1 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 27/68 (39%), Positives = 46/68 (67%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T +++ Y +FG++L+ I +D TG+S+G+GFV F+D ES R +
Sbjct: 31 KMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDRVLEL 90
Query: 77 PNPVIDGR 84
+DG+
Sbjct: 91 TEHKLDGK 98
Score = 110 (43.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
KVFVGGL+ + E++R YF +G+I + +D T + +G+ FVTF E ++ +N
Sbjct: 116 KVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLLEN 175
Query: 77 PNPVIDGRRANCNIA 91
I + +A
Sbjct: 176 RYHQIGSGKCEIKVA 190
Score = 38 (18.4 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 141 YQPFGYPTYTPDYGYHQPQY 160
YQ +GY DY Q Y
Sbjct: 260 YQNYGYGQGYDDYSGQQSSY 279
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 184 (69.8 bits), Expect = 8.4e-14, P = 8.4e-14
Identities = 31/75 (41%), Positives = 50/75 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T E +R YF ++GDI EA+++ D T +S+G+GFVTF DP S +
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 77 PNPVIDGRRANCNIA 91
+DG++ + +A
Sbjct: 90 GTHELDGKKVDPKVA 104
Score = 158 (60.7 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 32/91 (35%), Positives = 52/91 (57%)
Query: 1 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYG 60
+A+P T K+FVGGL+ T E+++ YFEQFG I +A+++ DK T + +G+G
Sbjct: 103 VAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFG 162
Query: 61 FVTFRDPESARRACDNPNPVIDGRRANCNIA 91
FVTF+ + + C+ I+ + C A
Sbjct: 163 FVTFQSEDVVDKVCEIHFHEINNKMVECKKA 193
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 186 (70.5 bits), Expect = 8.7e-14, P = 8.7e-14
Identities = 30/68 (44%), Positives = 51/68 (75%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GG++W+T E ++ YF ++GD++EAVI+ D+ TG+++G+GF+ F DP A R +
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
Query: 77 PNPVIDGR 84
+ +IDGR
Sbjct: 76 KH-IIDGR 82
Score = 137 (53.3 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 4 PHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVT 63
P + G K+FVGGL E + YF+QFG I + V++ D NT + +G+GF+T
Sbjct: 110 PSHGGNGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFIT 169
Query: 64 FRDPES 69
F ES
Sbjct: 170 FDSEES 175
>TAIR|locus:2055956 [details] [associations]
symbol:UBA1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0017091 "AU-rich
element binding" evidence=IDA] [GO:0048255 "mRNA stabilization"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0048255
IPI:IPI00520548 RefSeq:NP_850021.1 UniGene:At.25483
ProteinModelPortal:F4IIL5 SMR:F4IIL5 EnsemblPlants:AT2G22090.2
GeneID:816744 KEGG:ath:AT2G22090 OMA:WETTRET Uniprot:F4IIL5
Length = 347
Score = 183 (69.5 bits), Expect = 8.8e-14, P = 8.8e-14
Identities = 36/82 (43%), Positives = 49/82 (59%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
D T K+FV GL WET E + FE +G+I E ++ DK TGK+KG+GFV F+ + A+
Sbjct: 100 DVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAK 159
Query: 72 RACDNPNPVIDGRRANCNIASL 93
A P I R A C +AS+
Sbjct: 160 EALKEPKKRILNRTATCQLASM 181
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 150 (57.9 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL + T + + +F FG I E V++ D+ T +S+G+GF+TF +PE A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 77 PN-PVIDGRR 85
N +DGR+
Sbjct: 67 MNGESLDGRQ 76
Score = 40 (19.1 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 15/46 (32%), Positives = 17/46 (36%)
Query: 145 GYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYS 190
GY D GY +Y S P G Y YGY G+ S
Sbjct: 100 GYSRGGGDQGYGNGRY-------DSRPGGYGYGYGYGRSRDYGSRS 138
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 29/76 (38%), Positives = 50/76 (65%)
Query: 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACD 75
+K+F+GGL+W+T + +R YF +FG+I E +++ D T +S+G+GFVTF DP S +
Sbjct: 17 SKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLG 76
Query: 76 NPNPVIDGRRANCNIA 91
P+ +D + + +A
Sbjct: 77 QPHHELDSKTIDPKVA 92
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 162 (62.1 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 25/68 (36%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T ++++ YF +FGD+++ + D TG+S+G+GFV F++ ES + D
Sbjct: 77 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 136
Query: 77 PNPVIDGR 84
++G+
Sbjct: 137 KEHKLNGK 144
Score = 133 (51.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 46/175 (26%), Positives = 69/175 (39%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+ +TP E++R YF FG++ + D T K +G+ F+TF++ E ++ +
Sbjct: 162 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 221
Query: 77 PNPVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQGGAPSYGGVAASLXXXXXXX 136
+ + +A + +GG PS
Sbjct: 222 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGY 281
Query: 137 XSVIYQPFGYPTYTP-DY-GYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAY 189
S Y GY Y DY GY+ YY YG S GY S RG +
Sbjct: 282 GSYGYNSQGYGGYGGYDYTGYNS--YYG--YGDYSNQQS-----GYGKVSRRGGH 327
Score = 38 (18.4 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 11/38 (28%), Positives = 12/38 (31%)
Query: 141 YQPFGYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYY 178
Y + Y Y YGY YG S G Y
Sbjct: 294 YGGYDYTGYNSYYGYGDYSNQQSGYGKVSRRGGHQNSY 331
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 177 (67.4 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 28/68 (41%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+W+T ++++ YF +FG++++ I D NTG+S+G+GF+ F+D S + D
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 136 KEHRLDGR 143
Score = 124 (48.7 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIIS-DKNTGKSKGYGFVTFRDPESARRACD 75
K+FVGGL E E++R YF QFG+I EA+ + D K +G+ F+TF++ + ++ +
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 76 NPNPVIDGRRANCNIA 91
+ G + +A
Sbjct: 219 KKFHTVSGSKCEIKVA 234
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 177 (67.4 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 28/68 (41%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+W+T ++++ YF +FG++++ I D NTG+S+G+GF+ F+D S + D
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 136 KEHRLDGR 143
Score = 124 (48.7 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIIS-DKNTGKSKGYGFVTFRDPESARRACD 75
K+FVGGL E E++R YF QFG+I EA+ + D K +G+ F+TF++ + ++ +
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 76 NPNPVIDGRRANCNIA 91
+ G + +A
Sbjct: 219 KKFHTVSGSKCEIKVA 234
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 162 (62.1 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 25/68 (36%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T ++++ YF +FGD+++ + D TG+S+G+GFV F++ ES + D
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 77 PNPVIDGR 84
++G+
Sbjct: 156 KEHKLNGK 163
Score = 133 (51.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 46/175 (26%), Positives = 69/175 (39%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+ +TP E++R YF FG++ + D T K +G+ F+TF++ E ++ +
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240
Query: 77 PNPVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQGGAPSYGGVAASLXXXXXXX 136
+ + +A + +GG PS
Sbjct: 241 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGY 300
Query: 137 XSVIYQPFGYPTYTP-DY-GYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAY 189
S Y GY Y DY GY+ YY YG S GY S RG +
Sbjct: 301 GSYGYNSQGYGGYGGYDYTGYNS--YYG--YGDYSNQQS-----GYGKVSRRGGH 346
Score = 38 (18.4 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 11/38 (28%), Positives = 12/38 (31%)
Query: 141 YQPFGYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYY 178
Y + Y Y YGY YG S G Y
Sbjct: 313 YGGYDYTGYNSYYGYGDYSNQQSGYGKVSRRGGHQNSY 350
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 162 (62.1 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 25/68 (36%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T ++++ YF +FGD+++ + D TG+S+G+GFV F++ ES + D
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 77 PNPVIDGR 84
++G+
Sbjct: 156 KEHKLNGK 163
Score = 133 (51.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 46/175 (26%), Positives = 69/175 (39%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+ +TP E++R YF FG++ + D T K +G+ F+TF++ E ++ +
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240
Query: 77 PNPVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQGGAPSYGGVAASLXXXXXXX 136
+ + +A + +GG PS
Sbjct: 241 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGY 300
Query: 137 XSVIYQPFGYPTYTP-DY-GYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAY 189
S Y GY Y DY GY+ YY YG S GY S RG +
Sbjct: 301 GSYGYNSQGYGGYGGYDYTGYNS--YYG--YGDYSNQQS-----GYGKVSRRGGH 346
Score = 38 (18.4 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 11/38 (28%), Positives = 12/38 (31%)
Query: 141 YQPFGYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYY 178
Y + Y Y YGY YG S G Y
Sbjct: 313 YGGYDYTGYNSYYGYGDYSNQQSGYGKVSRRGGHQNSY 350
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 176 (67.0 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 28/68 (41%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+W+T ++++ YF +FG++++ I D NTG+S+G+GF+ F+D S + D
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 131 KEHRLDGR 138
Score = 124 (48.7 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIIS-DKNTGKSKGYGFVTFRDPESARRACD 75
K+FVGGL E E++R YF +FG+I EA+ + D K +G+ F+TF++ E ++ +
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 76 NPNPVIDGRRANCNIA 91
+ G + +A
Sbjct: 214 KKFHTVSGSKCEIKVA 229
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 148 (57.2 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 29/70 (41%), Positives = 43/70 (61%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL + T + +F FG I E V++ D+ T +S+G+GF+TF +PE A A
Sbjct: 7 KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 77 PN-PVIDGRR 85
N +DGR+
Sbjct: 67 MNGESLDGRQ 76
Score = 40 (19.1 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 15/46 (32%), Positives = 18/46 (39%)
Query: 145 GYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYS 190
GYP D GY +Y ++ G G Y YGY G S
Sbjct: 102 GYPRGGGDQGYGSGRYDNRP-GA----YGFGYGYGYGRSRDYGGRS 142
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 176 (67.0 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 28/68 (41%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+W+T ++++ YF +FG++++ I D NTG+S+G+GF+ F+D S + D
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 131 KEHRLDGR 138
Score = 124 (48.7 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIIS-DKNTGKSKGYGFVTFRDPESARRACD 75
K+FVGGL E E++R YF +FG+I EA+ + D K +G+ F+TF++ E ++ +
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 76 NPNPVIDGRRANCNIA 91
+ G + +A
Sbjct: 214 KKFHTVSGSKCEIKVA 229
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 177 (67.4 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 28/68 (41%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+W+T ++++ YF +FG++++ I D NTG+S+G+GF+ F+D S + D
Sbjct: 89 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 148
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 149 KEHRLDGR 156
Score = 124 (48.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIIS-DKNTGKSKGYGFVTFRDPESARRACD 75
K+FVGGL E E++R YF QFG+I EA+ + D K +G+ F+TF++ + ++ +
Sbjct: 173 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 231
Query: 76 NPNPVIDGRRANCNIA 91
+ G + +A
Sbjct: 232 KKFHTVSGSKCEIKVA 247
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 176 (67.0 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 28/68 (41%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+W+T ++++ YF +FG++++ I D NTG+S+G+GF+ F+D S + D
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQ 130
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 131 KEHRLDGR 138
Score = 127 (49.8 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIIS-DKNTGKSKGYGFVTFRDPESARRACD 75
K+FVGGL E E++R YF +FG+I EA+ + D + K +G+ F+TF++ E ++ +
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 213
Query: 76 NPNPVIDGRRANCNIA 91
I G + +A
Sbjct: 214 KKFHTISGSKCEIKVA 229
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 36/109 (33%), Positives = 58/109 (53%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
+ FVGGL W T + ++ F ++GD++++ II+D+ TG+S+G+GFVTF E+ R+A +
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 77 PNPV-IDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQGGAPSYGG 124
N +DGR N A +++GG YGG
Sbjct: 67 MNGQDLDGRNITVNEAQ-SRRSDGGGGFGGGGGGYGGQRREGGGGGYGG 114
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 181 (68.8 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 30/68 (44%), Positives = 50/68 (73%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GG++W+T E +R YF +GD++EAVI+ D+ TG+++G+GF+ F DP + R +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 77 PNPVIDGR 84
+ +IDGR
Sbjct: 67 KH-IIDGR 73
Score = 137 (53.3 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL EE + YF+QFG I + V++ D NT + +G+GF+TF ++ R
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 77 PNPVIDGR 84
++G+
Sbjct: 171 TFHELNGK 178
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 30/68 (44%), Positives = 44/68 (64%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL W T E +R YF Q+G++++ VI+ DK T +S+G+GFV F+DP +
Sbjct: 56 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 115
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 116 RPHTLDGR 123
Score = 128 (50.1 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
K+FVGG+ E+R YF++FG + E V+I D + +G+GF+TF D +S +A
Sbjct: 141 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 197
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 30/68 (44%), Positives = 44/68 (64%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL W T E +R YF Q+G++++ VI+ DK T +S+G+GFV F+DP +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 71 RPHTLDGR 78
Score = 128 (50.1 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
K+FVGG+ E+R YF++FG + E V+I D + +G+GF+TF D +S +A
Sbjct: 92 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 148
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 27/68 (39%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+W+T ++++ YF +FG++ + I D NTG+S+G+GF+ F++P S + +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 61 KEHRLDGR 68
Score = 124 (48.7 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIIS-DKNTGKSKGYGFVTFRDPESARRACD 75
K+FVGGL E E++R YF +FG+I EA+ + D T K +G+ F+TF++ + ++ +
Sbjct: 85 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
Query: 76 NPNPVIDGRRANCNIA 91
+ G + +A
Sbjct: 144 KKFHNVSGSKCEIKVA 159
>UNIPROTKB|J3QKT5 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 ProteinModelPortal:J3QKT5
Ensembl:ENST00000581776 Uniprot:J3QKT5
Length = 99
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 28/68 (41%), Positives = 46/68 (67%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T + +R YF +FG+I E +++ D T +S+G+GFVTF DP S +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 77 PNPVIDGR 84
P+ +D +
Sbjct: 82 PHHELDSK 89
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 176 (67.0 bits), Expect = 4.0e-13, P = 4.0e-13
Identities = 28/75 (37%), Positives = 51/75 (68%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T E +R YF +FG++ E +++ D T +++G+GF+TF DP S + +N
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNN 105
Query: 77 PNPVIDGRRANCNIA 91
+DG++ + +A
Sbjct: 106 REHELDGKKIDPKVA 120
Score = 160 (61.4 bits), Expect = 7.6e-11, P = 7.6e-11
Identities = 35/92 (38%), Positives = 57/92 (61%)
Query: 1 MAYPHYRSQFGDTTFTK-VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGY 59
+A+P R+Q T TK VF+GGL+ + E+M++YFE +G + +A+++ DK T + +G+
Sbjct: 119 VAFPK-RTQAKLVTKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGF 177
Query: 60 GFVTFRDPESARRACDNPNPVIDGRRANCNIA 91
GFVTF E A + C+ I+G+ C A
Sbjct: 178 GFVTFDSDEVADKVCEIHFHEINGKMVECKKA 209
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 178 (67.7 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 57/205 (27%), Positives = 91/205 (44%)
Query: 1 MAYPHYRSQFGDTTFTK-VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGY 59
+A+P R+Q T TK +FVGGL+ T E++++YFEQFG + +A+++ DK T + +G+
Sbjct: 95 VAFPR-RAQPKMVTRTKKIFVGGLSASTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGF 153
Query: 60 GFVTFRDPESARRACDNPNPVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQ--- 116
GFVTF + + + C+ I+ + C A ++PY
Sbjct: 154 GFVTFENEDIVEKVCEIHFHEINNKMVECKKAQ-PKEVMFPPGTRGRARSLPYTMDAFML 212
Query: 117 G-GAPSYGGVAASLXXXXXXXXSVIYQPFGYPTYTPDYGYHQPQYYHQMYG-TTSTPMGS 174
G G SY + A+ GY ++P Y Y P + YG + + +
Sbjct: 213 GMGMLSYPNIVATYGR-------------GYTGFSPSYSYQFPGFPATAYGPVAAAAVAA 259
Query: 175 PYYYGYSLQSPRGAYSAPQAQRMPP 199
G+ G YS P QR P
Sbjct: 260 ARGSGFP---DYGFYSGPGDQRAAP 281
Score = 162 (62.1 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 27/75 (36%), Positives = 48/75 (64%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T + +R YF +FG+I E +++ D T +S+G+GF+TF D S +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFADVSSVDKVLAQ 81
Query: 77 PNPVIDGRRANCNIA 91
P+ +D + + +A
Sbjct: 82 PHHELDSKTIDPKVA 96
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 174 (66.3 bits), Expect = 5.9e-13, P = 5.9e-13
Identities = 27/69 (39%), Positives = 48/69 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+W+T ++++ YF +FG++++ I D NTG+S+G+GF+ F++ +S R
Sbjct: 46 KMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQ 105
Query: 77 PNPVIDGRR 85
+DGR+
Sbjct: 106 KEHRLDGRQ 114
Score = 123 (48.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL ET E++R YF FG+I + +D T K +G+ F+TF++ + ++ +
Sbjct: 130 KIFVGGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKILEK 189
Query: 77 PNPVIDGRRANCNIA 91
+ G + IA
Sbjct: 190 KYHNVCGSKCEIKIA 204
>TAIR|locus:2047685 [details] [associations]
symbol:AT2G19380 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003604 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF00076 PROSITE:PS50102 SMART:SM00355
SMART:SM00360 SMART:SM00451 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 EMBL:AC003058 eggNOG:NOG253936 InterPro:IPR014898
Pfam:PF08790 HSSP:Q60900 IPI:IPI00545777 PIR:T01286
RefSeq:NP_565450.1 UniGene:At.50083 ProteinModelPortal:O64571
SMR:O64571 PRIDE:O64571 EnsemblPlants:AT2G19380.1 GeneID:816456
KEGG:ath:AT2G19380 TAIR:At2g19380 HOGENOM:HOG000114996
InParanoid:O64571 OMA:ESADRDI PhylomeDB:O64571
ProtClustDB:CLSN2914947 ArrayExpress:O64571 Genevestigator:O64571
Uniprot:O64571
Length = 613
Score = 179 (68.1 bits), Expect = 8.8e-13, P = 8.8e-13
Identities = 55/191 (28%), Positives = 78/191 (40%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
D +FV G W+T E ++ FE +G+I E ++ DK+TG+ KGYGFV F+ + AR
Sbjct: 404 DIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAR 463
Query: 72 RACDNPNPVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPY----HQQQGGAPSYGGVAA 127
A P + R CN+AS NI +Q + P
Sbjct: 464 EALKRPEKRMYNRIVVCNLASEKPGKAGKEQDMAEPVNIDLTKMANQSEAVLPGIELGRG 523
Query: 128 SLXXXXXXXXSVIYQPFGYPTYTPDYGY-HQPQYYHQMYGTTS-TPM--GSPYY--YGYS 181
+ FG P YGY HQ + MYG S M G P Y +G
Sbjct: 524 HVLEKMHHQQQQTMDMFGQNM--PFYGYSHQFPGFDPMYGALSGNQMLAGLPNYGMFGSG 581
Query: 182 LQSPRGAYSAP 192
+ + +G+ P
Sbjct: 582 MMTNQGSMLPP 592
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 177 (67.4 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 30/74 (40%), Positives = 49/74 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL WET + +R YFEQFG++L+ ++ D TG+S+G+GF+TF++P+
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 77 PN----PVIDGRRA 86
+ +ID +RA
Sbjct: 224 EHHLDGKIIDPKRA 237
Score = 153 (58.9 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 38/118 (32%), Positives = 58/118 (49%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGG+ + EE R +F QFG +L+A ++ DK+TG+ +G+GFVT+ + +
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 77 PNPVIDGR-----RANCNIASLXXXXXXXXXXXXXXXNIPYHQQQGGAPSYGGVAASL 129
P I G+ RA ASL N PY+ Q YGG+ ++
Sbjct: 308 PYITIHGKPVEVKRATPK-ASLRDSHDRHQHGYHGNAN-PYYAQNMNM--YGGMTPAM 361
>UNIPROTKB|F1NKP3 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 GO:GO:0070935 GO:GO:0010830
GeneTree:ENSGT00390000002308 OMA:VGYGYPA EMBL:AADN02018985
IPI:IPI00590634 Ensembl:ENSGALT00000012361 ArrayExpress:F1NKP3
Uniprot:F1NKP3
Length = 172
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 54/172 (31%), Positives = 71/172 (41%)
Query: 50 DKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCNIASLXXXXXXXXXXXXXXXN 109
D+ GKS+GYGFVT D +A RAC +PNP+IDGR+AN N+A L
Sbjct: 2 DRQRGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSIQTGFTIGVQ 61
Query: 110 I--PYHQQQ--GGAPSYGGVAASLXXXXXXXXSV--IYQPF-GYPTYTPDYGYHQPQYYH 162
P Q+ G P Y A + V I P+ Y + Y + Y
Sbjct: 62 QLHPAFIQRPFGLTPHYVYPQAIIQPSVVIPTPVQSIASPYIDYTAASQAYSQYTTAAYD 121
Query: 163 QMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGPSYLYYPTQAE 214
Q Y ++P YGY+ GA P P +PA Y P Q +
Sbjct: 122 Q-YPYAASPAAGFVGYGYT-----GAVQPPITASTPAAPATAFVQYQPQQLQ 167
>UNIPROTKB|F1NT70 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IEA] [GO:0006978 "DNA damage response,
signal transduction by p53 class mediator resulting in
transcription of p21 class mediator" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=IEA] [GO:0008285 "negative regulation
of cell proliferation" evidence=IEA] [GO:0010830 "regulation of
myotube differentiation" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IEA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] InterPro:IPR012677 GO:GO:0008285
GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007050
GO:GO:0003730 GO:GO:0043484 GO:GO:0006978 GO:GO:0070935
GO:GO:0010830 GeneTree:ENSGT00390000002308 OMA:VGYGYPA
EMBL:AADN02018985 IPI:IPI01017346 Ensembl:ENSGALT00000038979
ArrayExpress:F1NT70 Uniprot:F1NT70
Length = 171
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 54/172 (31%), Positives = 71/172 (41%)
Query: 50 DKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCNIASLXXXXXXXXXXXXXXXN 109
D+ GKS+GYGFVT D +A RAC +PNP+IDGR+AN N+A L
Sbjct: 1 DRQRGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSIQTGFTIGVQ 60
Query: 110 I--PYHQQQ--GGAPSYGGVAASLXXXXXXXXSV--IYQPF-GYPTYTPDYGYHQPQYYH 162
P Q+ G P Y A + V I P+ Y + Y + Y
Sbjct: 61 QLHPAFIQRPFGLTPHYVYPQAIIQPSVVIPTPVQSIASPYIDYTAASQAYSQYTTAAYD 120
Query: 163 QMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGPSYLYYPTQAE 214
Q Y ++P YGY+ GA P P +PA Y P Q +
Sbjct: 121 Q-YPYAASPAAGFVGYGYT-----GAVQPPITASTPAAPATAFVQYQPQQLQ 166
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 164 (62.8 bits), Expect = 9.9e-13, Sum P(2) = 9.9e-13
Identities = 25/69 (36%), Positives = 48/69 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+W+T +++++ YF FG + + +I+ D T +S+G+GF+TF++P + +
Sbjct: 204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKV 263
Query: 77 PNPVIDGRR 85
P +DG++
Sbjct: 264 PIHTLDGKK 272
Score = 161 (61.7 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 32/90 (35%), Positives = 52/90 (57%)
Query: 2 AYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGF 61
A P R + + T K+FVGG++ +T EE++ YF QFG + E V++ D+ T + +G+GF
Sbjct: 278 ATPKNRPRQANKT-KKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGF 336
Query: 62 VTFRDPESARRACDNPNPVIDGRRANCNIA 91
VTF + + R C+ I ++ C A
Sbjct: 337 VTFENEDVVDRVCEIHFHTIKNKKVECKKA 366
Score = 38 (18.4 bits), Expect = 9.9e-13, Sum P(2) = 9.9e-13
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 182 LQSPRGAYSAPQAQRMPPSP 201
LQSP A +A QA + +P
Sbjct: 423 LQSPAAAAAAQQAALISQNP 442
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 170 (64.9 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 28/68 (41%), Positives = 46/68 (67%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+W+T ++++ YF +FG++++ I NTG+SKG+GF+ F+D S + D
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEKVLDQ 124
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 125 KEHRLDGR 132
Score = 131 (51.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIIS-DKNTGKSKGYGFVTFRDPESARRACD 75
K+FVGGL E E++R YF +FG+I EA+ + D T K +G+ F+TF++ E ++ +
Sbjct: 149 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKTNKRRGFVFITFKEEEPVKKVLE 207
Query: 76 NPNPVIDGRRANCNIA 91
I G + +A
Sbjct: 208 KKFHTISGSKCEIKVA 223
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 158 (60.7 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 24/68 (35%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T ++++ YF +FG++++ + D TG+S+G+GFV F++ ES + D
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 77 PNPVIDGR 84
++G+
Sbjct: 61 KEHKLNGK 68
Score = 130 (50.8 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 42/173 (24%), Positives = 68/173 (39%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+ +TP E++R YF FG++ + D T K +G+ F+TF++ E ++ +
Sbjct: 86 KIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 145
Query: 77 PNPVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQGGAPSYGGVAASLXXXXXXX 136
+ + +A + + +GG PS
Sbjct: 146 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFVGRARGRGGGPSQNWNQGYSNYWNQGY 205
Query: 137 XSVIYQPFGYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAY 189
+ Y GY Y Y Y Y+ YG + S GY S RG +
Sbjct: 206 GNYGYNSQGYGGYG-GYDYTG---YNNYYGYSDY---SNQQSGYGKVSRRGGH 251
Score = 38 (18.4 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 11/38 (28%), Positives = 12/38 (31%)
Query: 141 YQPFGYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYY 178
Y + Y Y YGY YG S G Y
Sbjct: 218 YGGYDYTGYNNYYGYSDYSNQQSGYGKVSRRGGHQNSY 255
>UNIPROTKB|B4DM51 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK297295 IPI:IPI00908857
SMR:B4DM51 STRING:B4DM51 Ensembl:ENST00000442934 Uniprot:B4DM51
Length = 267
Score = 168 (64.2 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 42/154 (27%), Positives = 67/154 (43%)
Query: 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARR 72
T K+FVGGL+ T E++++YFEQFG + +A+++ DK T + +G+GFVTF + + +
Sbjct: 46 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 105
Query: 73 ACDNPNPVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQGGAPSYGGVAASLXXX 132
C+ I+ + C A +PY + +
Sbjct: 106 VCEIHFHEINNKMVECKKAQ-PKEVMFPPGTRGRARGLPY--------TMDAFMLGMGML 156
Query: 133 XXXXXSVIYQPFGYPTYTPDYGYHQPQYYHQMYG 166
Y GYP + P YGY P + YG
Sbjct: 157 GYPNFVATYGR-GYPGFAPSYGYQFPGFPAAAYG 189
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 30/78 (38%), Positives = 52/78 (66%)
Query: 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRAC- 74
+K+FVGGL+W T +++ F FG++ EA +I+D+ TG+S+G+GFV+F +SA A
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 75 DNPNPVIDGRRANCNIAS 92
+ ++GR+ N+A+
Sbjct: 95 EMDGKELNGRQIRVNLAT 112
>UNIPROTKB|H0YA61 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL136305 HGNC:HGNC:21539 Ensembl:ENST00000509686
Bgee:H0YA61 Uniprot:H0YA61
Length = 80
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 29/47 (61%), Positives = 38/47 (80%)
Query: 47 IISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCNIASL 93
+I+D+ TGKS+GYGFVT D +A RAC +PNP+IDGR+AN N+A L
Sbjct: 1 VITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYL 47
>TAIR|locus:2103670 [details] [associations]
symbol:UBA2A "UBP1-associated protein 2A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0017091 "AU-rich element
binding" evidence=IDA] [GO:0048255 "mRNA stabilization"
evidence=NAS] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=TAS] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002686
GO:GO:0009693 GO:GO:0006952 GO:GO:0009738 GO:GO:0000166
GO:GO:0008219 Gene3D:3.30.70.330 GO:GO:0010150 GO:GO:0017091
GO:GO:0048255 EMBL:AL390921 HSSP:Q14103 KO:K12741
ProtClustDB:CLSN2683657 EMBL:AF367280 EMBL:AY037245 EMBL:AY091040
EMBL:AY117351 EMBL:AY133549 EMBL:BT006368 EMBL:AJ439404
IPI:IPI00547983 PIR:T51274 RefSeq:NP_001190109.1
RefSeq:NP_001190110.1 RefSeq:NP_567042.1 RefSeq:NP_850710.1
RefSeq:NP_850711.1 UniGene:At.9845 SMR:Q9LES2 IntAct:Q9LES2
STRING:Q9LES2 EnsemblPlants:AT3G56860.1 EnsemblPlants:AT3G56860.2
EnsemblPlants:AT3G56860.3 EnsemblPlants:AT3G56860.4
EnsemblPlants:AT3G56860.5 GeneID:824853 KEGG:ath:AT3G56860
TAIR:At3g56860 InParanoid:Q9LES2 OMA:ADEDPVH Genevestigator:Q9LES2
Uniprot:Q9LES2
Length = 478
Score = 174 (66.3 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 33/81 (40%), Positives = 46/81 (56%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
D K+FV GL W+T TE + F+Q+G+I + + DK +GKSKGYGF+ ++ AR
Sbjct: 136 DPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGAR 195
Query: 72 RACDNPNPVIDGRRANCNIAS 92
A P I R C +AS
Sbjct: 196 NALKQPQKKIGSRMTACQLAS 216
Score = 124 (48.7 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K++V + E +++ +F +FG+I E + DK TG+ KG+ ++ ESA+RA
Sbjct: 243 TQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRA 302
Query: 74 CDNPNPVIDGRRANCNIA 91
+ P+ +G +C A
Sbjct: 303 LEEPHKTFEGHILHCQKA 320
>UNIPROTKB|H0YHB7 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC003982 HGNC:HGNC:7330 Ensembl:ENST00000546985 Uniprot:H0YHB7
Length = 233
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 34/92 (36%), Positives = 56/92 (60%)
Query: 1 MAYPHYRSQFGDTTFTK-VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGY 59
+A+P R+Q T TK +FVGGL+ T E++++YFEQFG + +A+++ DK T + +G+
Sbjct: 26 VAFPR-RAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGF 84
Query: 60 GFVTFRDPESARRACDNPNPVIDGRRANCNIA 91
GFVTF + + C+ I+ + C A
Sbjct: 85 GFVTFESEDIVEKVCEIHFHEINNKMVECKKA 116
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 159 (61.0 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 28/79 (35%), Positives = 50/79 (63%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
D+ K+FVGG++WET +++R +F +G++ +A+++ DK TG+ +G+GFV F DP
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLD 61
Query: 72 RACDNPNPV----IDGRRA 86
R + + +D +RA
Sbjct: 62 RVLQEKHSIDTREVDVKRA 80
Score = 125 (49.1 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 7 RSQFGDT--TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTF 64
RS GD K+FVGGL EE R+YFE +G + + I+ D+ T + +G+GFV+F
Sbjct: 99 RSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSF 158
Query: 65 RDPESA 70
D E A
Sbjct: 159 -DSEDA 163
Score = 44 (20.5 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 24/90 (26%), Positives = 29/90 (32%)
Query: 118 GAPSYGGVAASLXXXXXXXXSVIYQPFGY-PTYTPDYGYHQPQYYHQMYGTTSTPMGSPY 176
G +YGG S + GY T P GY + TP S Y
Sbjct: 256 GYGAYGGYTGSAGGYGAGATA------GYGATNIPGAGYGSSTGVAPR-NSWDTPASSGY 308
Query: 177 YY-GYSLQSPRGAYSAPQAQRMPPSPAGPS 205
GY + Y P A SP+G S
Sbjct: 309 GNPGYGSGAAHSGYGVPGAAPPTQSPSGYS 338
Score = 42 (19.8 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 147 PTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYS 190
PT +P GY Y + Y + + G+ YG P G S
Sbjct: 330 PTQSPS-GYSNQGYGYGGYSGSDSGYGNQAAYGVVGGRPSGGGS 372
Score = 38 (18.4 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 12/38 (31%), Positives = 12/38 (31%)
Query: 118 GAPSYGGVAASLXXXXXXXXSVIYQPFGYPTYTPDYGY 155
G P YG AA P GY YGY
Sbjct: 309 GNPGYGSGAAHSGYGVPGAAPPTQSPSGYSNQ--GYGY 344
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 170 (64.9 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 32/83 (38%), Positives = 53/83 (63%)
Query: 5 HYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTF 64
H S ++ K+FVGG++WET E YF +FG+++++VI++D+ TG +G+GFVTF
Sbjct: 55 HRHSSSSMSSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTF 114
Query: 65 RDPESARRACDNPNPVIDGRRAN 87
D A + + + VID R+ +
Sbjct: 115 ADSAVAEKVLEEDH-VIDDRKVD 136
Score = 135 (52.6 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 26/56 (46%), Positives = 39/56 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARR 72
K+FVGGL +E++ YF +GDI+E I+ D +TG+S+G+GFVTF+ +S R
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDR 213
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 156 (60.0 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 29/83 (34%), Positives = 51/83 (61%)
Query: 2 AYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGF 61
A P S F T+ K+F+GGL+W+T +++ Y +FG++++ I +D TG+S+G+GF
Sbjct: 38 ACPLDPSSF-PTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGF 96
Query: 62 VTFRDPESARRACDNPNPVIDGR 84
V F+D S + + +DG+
Sbjct: 97 VLFKDAASVDKVLELKEHKLDGK 119
Score = 116 (45.9 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
KVFVGGL+ +T E+++ YF FG+I + D T + +G+ F+T+ D E ++ ++
Sbjct: 137 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 196
Query: 77 PNPVIDGRRANCNIA 91
I + +A
Sbjct: 197 RYHQIGSGKCEIKVA 211
Score = 47 (21.6 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 160 YYHQMYGTTSTPMGSPYYYGY 180
YY Q YG ++ G Y GY
Sbjct: 256 YYDQGYGNYNSAYGDESYSGY 276
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 156 (60.0 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 29/83 (34%), Positives = 51/83 (61%)
Query: 2 AYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGF 61
A P S F T+ K+F+GGL+W+T +++ Y +FG++++ I +D TG+S+G+GF
Sbjct: 38 ACPLDPSSF-PTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGF 96
Query: 62 VTFRDPESARRACDNPNPVIDGR 84
V F+D S + + +DG+
Sbjct: 97 VLFKDAASVDKVLELKEHKLDGK 119
Score = 116 (45.9 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
KVFVGGL+ +T E+++ YF FG+I + D T + +G+ F+T+ D E ++ ++
Sbjct: 137 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 196
Query: 77 PNPVIDGRRANCNIA 91
I + +A
Sbjct: 197 RYHQIGSGKCEIKVA 211
Score = 47 (21.6 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 160 YYHQMYGTTSTPMGSPYYYGY 180
YY Q YG ++ G Y GY
Sbjct: 256 YYDQGYGNYNSAYGDESYSGY 276
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 168 (64.2 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 48/176 (27%), Positives = 81/176 (46%)
Query: 1 MAYPHYRSQFGDTTFTK-VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGY 59
+A+P R+Q T TK +FVGGL+ T E++++YF+QFG + +A+++ DK T + +G+
Sbjct: 94 VAFPR-RAQPKLVTRTKKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGF 152
Query: 60 GFVTFRDPESARRACDNPNPVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQ--- 116
GFVTF + + + C+ I+ + C A +PY
Sbjct: 153 GFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSSRGRARVMPYGMDAFML 212
Query: 117 G-GAPSYGGVAASLXXXXXXXXSVIYQPFGYPTYTPDYGYHQPQYYHQMYGTTSTP 171
G G Y G A+ Y Y + TP Y Y P+++ + ++P
Sbjct: 213 GIGMLGYPGFQATT-----------YAGRSYTSLTPGYTYQFPEFHLERTPLLTSP 257
Score = 143 (55.4 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 25/75 (33%), Positives = 46/75 (61%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T E ++ YF +FG++ E++++ D T +S+G+GFVTF D +
Sbjct: 21 KMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVDKVLAQ 80
Query: 77 PNPVIDGRRANCNIA 91
+D + + +A
Sbjct: 81 TRHELDSKTIDPKVA 95
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 158 (60.7 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 24/68 (35%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T ++++ YF +FG++++ + D TG+S+G+GFV F++ ES + D
Sbjct: 46 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 105
Query: 77 PNPVIDGR 84
++G+
Sbjct: 106 KEHKLNGK 113
Score = 128 (50.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARR 72
K+FVGGL+ +TP E++R YF FG++ + D T K +G+ F+TF++ E ++
Sbjct: 131 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 186
Score = 37 (18.1 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 11/38 (28%), Positives = 12/38 (31%)
Query: 141 YQPFGYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYY 178
Y + Y Y YGY YG S G Y
Sbjct: 263 YGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSY 300
>DICTYBASE|DDB_G0275971 [details] [associations]
symbol:DDB_G0275971 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0275971
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000013
eggNOG:NOG260394 RefSeq:XP_643377.1 ProteinModelPortal:Q552K5
EnsemblProtists:DDB0203538 GeneID:8620261 KEGG:ddi:DDB_G0275971
InParanoid:Q552K5 Uniprot:Q552K5
Length = 699
Score = 172 (65.6 bits), Expect = 6.1e-12, P = 6.1e-12
Identities = 32/72 (44%), Positives = 47/72 (65%)
Query: 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACD 75
TK+FVGG++W+ ++ YF QFG++LE II D NT KSKGYGF+TF + +S +
Sbjct: 103 TKIFVGGISWKADENTLKTYFLQFGNVLECKIIMDYNTNKSKGYGFITFENEDSIEKVRT 162
Query: 76 NPNPVIDGRRAN 87
+ N + G+ N
Sbjct: 163 S-NLLFMGKNMN 173
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 28/76 (36%), Positives = 51/76 (67%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K++VG L+++ +E++ +F Q+G+I EA +I D+ TG+SKG+ F+T+ ++A+ A
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 77 PNPV-IDGRRANCNIA 91
N + + GR+ NIA
Sbjct: 79 ANGIDLQGRKIRVNIA 94
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 28/76 (36%), Positives = 51/76 (67%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K++VG L+++ +E++ +F Q+G+I EA +I D+ TG+SKG+ F+T+ ++A+ A
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 77 PNPV-IDGRRANCNIA 91
N + + GR+ NIA
Sbjct: 79 ANGIDLQGRKIRVNIA 94
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 31/78 (39%), Positives = 48/78 (61%)
Query: 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACD 75
TK+F+GGL+W T +R F FGD+++A +I D+ TG+S+G+GFV F D +A A
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 76 NPN-PVIDGRRANCNIAS 92
+ ++GR N A+
Sbjct: 95 EMDGKELNGRHIRVNPAN 112
>UNIPROTKB|I3LPG0 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
Length = 332
Score = 165 (63.1 bits), Expect = 7.8e-12, P = 7.8e-12
Identities = 34/92 (36%), Positives = 56/92 (60%)
Query: 1 MAYPHYRSQFGDTTFTK-VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGY 59
+A+P R+Q T TK +FVGGL+ T E++++YFEQFG + +A+++ DK T + +G+
Sbjct: 61 VAFPR-RAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGF 119
Query: 60 GFVTFRDPESARRACDNPNPVIDGRRANCNIA 91
GFVTF + + C+ I+ + C A
Sbjct: 120 GFVTFESEDIVEKVCEIHFHEINNKMVECKKA 151
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 165 (63.1 bits), Expect = 8.6e-12, P = 8.6e-12
Identities = 34/92 (36%), Positives = 56/92 (60%)
Query: 1 MAYPHYRSQFGDTTFTK-VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGY 59
+A+P R+Q T TK +FVGGL+ T E++++YFEQFG + +A+++ DK T + +G+
Sbjct: 74 VAFPR-RAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGF 132
Query: 60 GFVTFRDPESARRACDNPNPVIDGRRANCNIA 91
GFVTF + + C+ I+ + C A
Sbjct: 133 GFVTFESEDIVEKVCEIHFHEINNKMVECKKA 164
Score = 155 (59.6 bits), Expect = 9.8e-10, P = 9.8e-10
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T E +R YF QFG++ E +++ D T +S+G+GFVTF D +
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 60
Query: 77 PNPVIDGRRANCNIA 91
+D + + +A
Sbjct: 61 SRHELDSKTIDPKVA 75
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 169 (64.5 bits), Expect = 9.0e-12, P = 9.0e-12
Identities = 27/68 (39%), Positives = 46/68 (67%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL WET + ++ YF QFG++ E ++ D TG+S+G+GF+TF+DP++
Sbjct: 111 KMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVMVK 170
Query: 77 PNPVIDGR 84
+ +DG+
Sbjct: 171 EH-YLDGK 177
Score = 144 (55.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 25/58 (43%), Positives = 44/58 (75%)
Query: 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
+K+FVGG++ E ++ +++F QFG +++A ++ DK+TG+ +G+GFVTF D E+A A
Sbjct: 194 SKIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTF-DSEAAVEA 250
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 154 (59.3 bits), Expect = 9.3e-12, Sum P(2) = 9.3e-12
Identities = 24/68 (35%), Positives = 45/68 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T +++ Y +FG++++ I +D TG+S+G+GFV F+D S + +
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 77 PNPVIDGR 84
+DG+
Sbjct: 91 KEHKLDGK 98
Score = 116 (45.9 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
KVFVGGL+ +T E+++ YF FG+I + D T + +G+ F+T+ D E ++ ++
Sbjct: 116 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 175
Query: 77 PNPVIDGRRANCNIA 91
I + +A
Sbjct: 176 RYHQIGSGKCEIKVA 190
Score = 46 (21.3 bits), Expect = 9.3e-12, Sum P(2) = 9.3e-12
Identities = 16/53 (30%), Positives = 18/53 (33%)
Query: 160 YYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGPSYLYYPTQ 212
YY Q YG ++ Y GY G Y P GP Y Y Q
Sbjct: 235 YYDQGYGNYNSAYSDQSYSGY------GGYDY-SGYNYPNYGYGPGYTDYSGQ 280
Score = 40 (19.1 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 141 YQPFGYPTYTPDYGYHQPQYYHQMYGTTSTPMGS 174
Y + YP Y GY YG S G+
Sbjct: 260 YSGYNYPNYGYGPGYTDYSGQQSTYGKASRGGGN 293
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 164 (62.8 bits), Expect = 9.8e-12, P = 9.8e-12
Identities = 34/92 (36%), Positives = 55/92 (59%)
Query: 1 MAYPHYRSQFGDTTFTK-VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGY 59
+A+P R+Q T TK +FVGGL+ T E+++ YFEQFG + +A+++ DK T + +G+
Sbjct: 61 VAFPR-RAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGF 119
Query: 60 GFVTFRDPESARRACDNPNPVIDGRRANCNIA 91
GFVTF + + C+ I+ + C A
Sbjct: 120 GFVTFESEDIVEKVCEIHFHEINNKMVECKKA 151
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 165 (63.1 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 34/92 (36%), Positives = 56/92 (60%)
Query: 1 MAYPHYRSQFGDTTFTK-VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGY 59
+A+P R+Q T TK +FVGGL+ T E++++YFEQFG + +A+++ DK T + +G+
Sbjct: 94 VAFPR-RAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGF 152
Query: 60 GFVTFRDPESARRACDNPNPVIDGRRANCNIA 91
GFVTF + + C+ I+ + C A
Sbjct: 153 GFVTFESEDIVEKVCEIHFHEINNKMVECKKA 184
Score = 155 (59.6 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T E +R YF QFG++ E +++ D T +S+G+GFVTF D +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 77 PNPVIDGRRANCNIA 91
+D + + +A
Sbjct: 81 SRHELDSKTIDPKVA 95
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 162 (62.1 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 25/68 (36%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T ++++ YF +FGD+++ + D TG+S+G+GFV F++ ES + D
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 77 PNPVIDGR 84
++G+
Sbjct: 156 KEHKLNGK 163
Score = 128 (50.1 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARR 72
K+FVGGL+ +TP E++R YF FG++ + D T K +G+ F+TF++ E ++
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 236
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 164 (62.8 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 34/92 (36%), Positives = 55/92 (59%)
Query: 1 MAYPHYRSQFGDTTFTK-VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGY 59
+A+P R+Q T TK +FVGGL+ T E+++ YFEQFG + +A+++ DK T + +G+
Sbjct: 94 VAFPR-RAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGF 152
Query: 60 GFVTFRDPESARRACDNPNPVIDGRRANCNIA 91
GFVTF + + C+ I+ + C A
Sbjct: 153 GFVTFESEDIVEKVCEIHFHEINNKMVECKKA 184
Score = 155 (59.6 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T E +R YF QFG++ E +++ D T +S+G+GFVTF D +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 77 PNPVIDGRRANCNIA 91
+D + + +A
Sbjct: 81 SRHELDSKTIDPKVA 95
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 164 (62.8 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 34/92 (36%), Positives = 55/92 (59%)
Query: 1 MAYPHYRSQFGDTTFTK-VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGY 59
+A+P R+Q T TK +FVGGL+ T E+++ YFEQFG + +A+++ DK T + +G+
Sbjct: 94 VAFPR-RAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGF 152
Query: 60 GFVTFRDPESARRACDNPNPVIDGRRANCNIA 91
GFVTF + + C+ I+ + C A
Sbjct: 153 GFVTFESEDIVEKVCEIHFHEINNKMVECKKA 184
Score = 155 (59.6 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T E +R YF QFG++ E +++ D T +S+G+GFVTF D +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 77 PNPVIDGRRANCNIA 91
+D + + +A
Sbjct: 81 SRHELDSKTIDPKVA 95
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 164 (62.8 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 34/92 (36%), Positives = 55/92 (59%)
Query: 1 MAYPHYRSQFGDTTFTK-VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGY 59
+A+P R+Q T TK +FVGGL+ T E+++ YFEQFG + +A+++ DK T + +G+
Sbjct: 94 VAFPR-RAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGF 152
Query: 60 GFVTFRDPESARRACDNPNPVIDGRRANCNIA 91
GFVTF + + C+ I+ + C A
Sbjct: 153 GFVTFESEDIVEKVCEIHFHEINNKMVECKKA 184
Score = 155 (59.6 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T E +R YF QFG++ E +++ D T +S+G+GFVTF D +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 77 PNPVIDGRRANCNIA 91
+D + + +A
Sbjct: 81 SRHELDSKTIDPKVA 95
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 157 (60.3 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 34/79 (43%), Positives = 47/79 (59%)
Query: 7 RSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRD 66
+S+ T VFVG L+ E +++R F+ FGD+ +A +I D NT KSKGYGFV++
Sbjct: 126 QSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPK 185
Query: 67 PESARRACDNPNPVIDGRR 85
E A RA + N GRR
Sbjct: 186 REEAERAIEQMNGQWLGRR 204
Score = 44 (20.5 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 13/26 (50%), Positives = 13/26 (50%)
Query: 167 TTSTPMGSPYYYGYSLQSPRGAYSAP 192
T TP GS Y YGY S G S P
Sbjct: 315 TGKTPGGS-YGYGYG-NSSSGGNSQP 338
Score = 43 (20.2 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 112 YHQQQGGAP 120
Y QQQGGAP
Sbjct: 391 YWQQQGGAP 399
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 24/68 (35%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T ++++ YF +FG++++ + D TG+S+G+GFV F++ ES + D
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 77 PNPVIDGR 84
++G+
Sbjct: 62 KEHKLNGK 69
Score = 128 (50.1 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARR 72
K+FVGGL+ +TP E++R YF FG++ + D T K +G+ F+TF++ E ++
Sbjct: 87 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 142
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 24/68 (35%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T ++++ YF +FG++++ + D TG+S+G+GFV F++ ES + D
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 77 PNPVIDGR 84
++G+
Sbjct: 158 KEHKLNGK 165
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 24/68 (35%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T ++++ YF +FG++++ + D TG+S+G+GFV F++ ES + D
Sbjct: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
Query: 77 PNPVIDGR 84
++G+
Sbjct: 139 KEHKLNGK 146
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 29/70 (41%), Positives = 47/70 (67%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL +ET E + + F ++G + E V++ D+ + +S+G+GFVTF +PE A+ A
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 77 PN-PVIDGRR 85
N +DGR+
Sbjct: 67 MNGKSVDGRQ 76
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 158 (60.7 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 24/68 (35%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T ++++ YF +FG++++ + D TG+S+G+GFV F++ ES + D
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 77 PNPVIDGR 84
++G+
Sbjct: 158 KEHKLNGK 165
Score = 128 (50.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARR 72
K+FVGGL+ +TP E++R YF FG++ + D T K +G+ F+TF++ E ++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
Score = 37 (18.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 11/38 (28%), Positives = 12/38 (31%)
Query: 141 YQPFGYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYY 178
Y + Y Y YGY YG S G Y
Sbjct: 315 YGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSY 352
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 158 (60.7 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 24/68 (35%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T ++++ YF +FG++++ + D TG+S+G+GFV F++ ES + D
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 77 PNPVIDGR 84
++G+
Sbjct: 158 KEHKLNGK 165
Score = 128 (50.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARR 72
K+FVGGL+ +TP E++R YF FG++ + D T K +G+ F+TF++ E ++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
Score = 37 (18.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 11/38 (28%), Positives = 12/38 (31%)
Query: 141 YQPFGYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYY 178
Y + Y Y YGY YG S G Y
Sbjct: 315 YGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSY 352
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 158 (60.7 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 24/68 (35%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T ++++ YF +FG++++ + D TG+S+G+GFV F++ ES + D
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 77 PNPVIDGR 84
++G+
Sbjct: 158 KEHKLNGK 165
Score = 128 (50.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARR 72
K+FVGGL+ +TP E++R YF FG++ + D T K +G+ F+TF++ E ++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
Score = 37 (18.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 11/38 (28%), Positives = 12/38 (31%)
Query: 141 YQPFGYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYY 178
Y + Y Y YGY YG S G Y
Sbjct: 315 YGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSY 352
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 158 (60.7 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 24/68 (35%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T ++++ YF +FG++++ + D TG+S+G+GFV F++ ES + D
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 77 PNPVIDGR 84
++G+
Sbjct: 158 KEHKLNGK 165
Score = 128 (50.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARR 72
K+FVGGL+ +TP E++R YF FG++ + D T K +G+ F+TF++ E ++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
Score = 37 (18.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 11/38 (28%), Positives = 12/38 (31%)
Query: 141 YQPFGYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYY 178
Y + Y Y YGY YG S G Y
Sbjct: 315 YGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSY 352
>TAIR|locus:2063177 [details] [associations]
symbol:AT2G41060 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009693
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006952 GO:GO:0000166
GO:GO:0008219 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150
EMBL:AC004261 eggNOG:COG0724 KO:K12741 HSSP:P09012 OMA:CHKANDG
EMBL:AF439844 EMBL:AY133583 EMBL:AK227158 IPI:IPI00545461
PIR:T02113 RefSeq:NP_001078035.1 RefSeq:NP_181639.1
UniGene:At.65764 ProteinModelPortal:O80678 SMR:O80678 IntAct:O80678
STRING:O80678 PaxDb:O80678 PRIDE:O80678 EnsemblPlants:AT2G41060.1
EnsemblPlants:AT2G41060.2 GeneID:818705 KEGG:ath:AT2G41060
TAIR:At2g41060 HOGENOM:HOG000070822 InParanoid:O80678
PhylomeDB:O80678 ProtClustDB:CLSN2683657 ArrayExpress:O80678
Genevestigator:O80678 Uniprot:O80678
Length = 451
Score = 164 (62.8 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
D K+FV GL W+T + + F+Q+G+I + + DK +G+SKGYGF+ F+ AR
Sbjct: 124 DLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGAR 183
Query: 72 RACDNPNPVIDGRRANCNIASL 93
A P I R C +AS+
Sbjct: 184 NALKQPQKKIGTRMTACQLASI 205
Score = 125 (49.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K++V ++ + +++ +F +FG+I E + DK TG+ KG+ +R ESA++A +
Sbjct: 228 KIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEE 287
Query: 77 PNPVIDGRRANCNIAS 92
P+ +G +C+ A+
Sbjct: 288 PHKTFEGHVLHCHKAN 303
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 36/108 (33%), Positives = 52/108 (48%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL + T + + +F FG I E V++ D+ T +S+G+GF+TF DPE A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRA 66
Query: 77 PN-PVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQGGAPSYG 123
N +DGR+ + A Y + GG YG
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGGAFGAHGRGRSY-SRGGGDQGYG 113
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 28/70 (40%), Positives = 47/70 (67%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL ++T E + + F ++G I E V++ D+ T +S+G+GFVTF +P+ A+ A
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 77 PN-PVIDGRR 85
N +DGR+
Sbjct: 66 MNGKAVDGRQ 75
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 153 (58.9 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 23/67 (34%), Positives = 46/67 (68%)
Query: 18 VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP 77
+F+GGL+W+T ++++ YF +FG++++ + D TG+S+G+GFV F++ ES + D
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 78 NPVIDGR 84
++G+
Sbjct: 61 EHKLNGK 67
Score = 130 (50.8 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 42/173 (24%), Positives = 68/173 (39%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+ +TP E++R YF FG++ + D T K +G+ F+TF++ E ++ +
Sbjct: 85 KIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 144
Query: 77 PNPVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQGGAPSYGGVAASLXXXXXXX 136
+ + +A + + +GG PS
Sbjct: 145 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFVGRARGRGGGPSQNWNQGYSNYWNQGY 204
Query: 137 XSVIYQPFGYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAY 189
+ Y GY Y Y Y Y+ YG + S GY S RG +
Sbjct: 205 GNYGYNSQGYGGYG-GYDYTG---YNNYYGYSDY---SNQQSGYGKVSRRGGH 250
Score = 38 (18.4 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 11/38 (28%), Positives = 12/38 (31%)
Query: 141 YQPFGYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYY 178
Y + Y Y YGY YG S G Y
Sbjct: 217 YGGYDYTGYNNYYGYSDYSNQQSGYGKVSRRGGHQNSY 254
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 154 (59.3 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 24/68 (35%), Positives = 45/68 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T +++ Y +FG++++ I +D TG+S+G+GFV F+D S + +
Sbjct: 67 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 126
Query: 77 PNPVIDGR 84
+DG+
Sbjct: 127 KEHKLDGK 134
Score = 116 (45.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
KVFVGGL+ +T E+++ YF FG+I + D T + +G+ F+T+ D E ++ ++
Sbjct: 152 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 211
Query: 77 PNPVIDGRRANCNIA 91
I + +A
Sbjct: 212 RYHQIGSGKCEIKVA 226
Score = 44 (20.5 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 15/50 (30%), Positives = 17/50 (34%)
Query: 160 YYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGPSYLYY 209
YY Q YG ++ Y GY G Y P GP Y Y
Sbjct: 271 YYDQGYGNYNSAYSDQSYSGY------GGYDY-SGYNYPNYGYGPGYTDY 313
Score = 42 (19.8 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 141 YQPFGYPTYT-PDYGYHQPQYYHQMYGTTST 170
Y + Y Y P+YGY P Y G ST
Sbjct: 291 YGGYDYSGYNYPNYGYG-PGYTDYSAGQQST 320
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL++ET E +R +FEQ+G + + V++ D NT +S+G+GFVT+ E A N
Sbjct: 11 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 69
Query: 77 PNP-VIDGR 84
P +DGR
Sbjct: 70 ARPHKVDGR 78
Score = 122 (48.0 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVG + +T +R YF Q+G I++D+ +GK +G+ FVTF D +S +
Sbjct: 101 KIFVGAIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQ 160
Query: 77 PNPVIDGRRANCNI 90
++G NC +
Sbjct: 161 KYHTVNGH--NCEV 172
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL++ET E +R +FEQ+G + + V++ D NT +S+G+GFVT+ E A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 73
Query: 77 PNP-VIDGR 84
P +DGR
Sbjct: 74 ARPHKVDGR 82
>UNIPROTKB|J3KQA8 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
ProteinModelPortal:J3KQA8 Ensembl:ENST00000420780 Uniprot:J3KQA8
Length = 102
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL++ET E +R +FEQ+G + + V++ D NT +S+G+GFVT+ E A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 73
Query: 77 PNP-VIDGR 84
P +DGR
Sbjct: 74 ARPHKVDGR 82
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFR-DPES-ARRAC 74
K+F+GGLAW T + +R F ++G I EAV++ D++T +S+G+GFV F +PE+ A
Sbjct: 3 KLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGA 62
Query: 75 DNPNPVIDGRRANCNIAS 92
N N DGR + AS
Sbjct: 63 MN-NQEFDGRIIRVDKAS 79
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 23/67 (34%), Positives = 46/67 (68%)
Query: 18 VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP 77
+F+GGL+W+T ++++ YF +FG++++ + D TG+S+G+GFV F++ ES + D
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 78 NPVIDGR 84
++G+
Sbjct: 61 EHKLNGK 67
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 132 (51.5 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 35/87 (40%), Positives = 49/87 (56%)
Query: 8 SQFGDTT-FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRD 66
SQ DT+ VFVG L+ E TE+++ F FG I +A ++ D TGKSKGYGFV+F +
Sbjct: 105 SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYN 164
Query: 67 PESARRACDNPNPV-IDGRRANCNIAS 92
A A + + GR+ N A+
Sbjct: 165 KLDAENAIVHMGGQWLGGRQIRTNWAT 191
Score = 87 (35.7 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 25/72 (34%), Positives = 34/72 (47%)
Query: 18 VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP 77
V+ GG+A + MR+ F FG I+E + +K GY FV F ESA A +
Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSV 277
Query: 78 N-PVIDGRRANC 88
N I+G C
Sbjct: 278 NGTTIEGHVVKC 289
Score = 79 (32.9 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 22/63 (34%), Positives = 31/63 (49%)
Query: 151 PDYG-YHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGPSYLYY 209
P YG Y QP + Q +G +P + + G+ Q P+G AP PP+ AG +
Sbjct: 334 PPYGVYGQP-WNQQGFGVDQSPSAA-WMGGFGAQPPQG--QAPPPVIPPPNQAGYGMASF 389
Query: 210 PTQ 212
PTQ
Sbjct: 390 PTQ 392
Score = 49 (22.3 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 20/66 (30%), Positives = 26/66 (39%)
Query: 155 YHQPQYYHQ-MYGTTSTP----MGSPY-YYGYSL-QSPRGAYSAPQAQRMPPSPAGPSYL 207
Y PQ Y Q M P G P+ G+ + QSP A+ + P A P +
Sbjct: 317 YGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMGGFGAQPPQGQAPPPVI 376
Query: 208 YYPTQA 213
P QA
Sbjct: 377 PPPNQA 382
Score = 47 (21.6 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 150 TPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQS-----PRGAYSAPQAQR 196
+PD + Q + +G S G+P YG + + P G Y P Q+
Sbjct: 295 SPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQ 346
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 132 (51.5 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 35/87 (40%), Positives = 49/87 (56%)
Query: 8 SQFGDTT-FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRD 66
SQ DT+ VFVG L+ E TE+++ F FG I +A ++ D TGKSKGYGFV+F +
Sbjct: 105 SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYN 164
Query: 67 PESARRACDNPNPV-IDGRRANCNIAS 92
A A + + GR+ N A+
Sbjct: 165 KLDAENAIVHMGGQWLGGRQIRTNWAT 191
Score = 87 (35.7 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 25/72 (34%), Positives = 34/72 (47%)
Query: 18 VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP 77
V+ GG+A + MR+ F FG I+E + +K GY FV F ESA A +
Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSV 277
Query: 78 N-PVIDGRRANC 88
N I+G C
Sbjct: 278 NGTTIEGHVVKC 289
Score = 79 (32.9 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 22/63 (34%), Positives = 31/63 (49%)
Query: 151 PDYG-YHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGPSYLYY 209
P YG Y QP + Q +G +P + + G+ Q P+G AP PP+ AG +
Sbjct: 334 PPYGVYGQP-WNQQGFGVDQSPSAA-WMGGFGAQPPQG--QAPPPVIPPPNQAGYGMASF 389
Query: 210 PTQ 212
PTQ
Sbjct: 390 PTQ 392
Score = 49 (22.3 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 20/66 (30%), Positives = 26/66 (39%)
Query: 155 YHQPQYYHQ-MYGTTSTP----MGSPY-YYGYSL-QSPRGAYSAPQAQRMPPSPAGPSYL 207
Y PQ Y Q M P G P+ G+ + QSP A+ + P A P +
Sbjct: 317 YGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMGGFGAQPPQGQAPPPVI 376
Query: 208 YYPTQA 213
P QA
Sbjct: 377 PPPNQA 382
Score = 47 (21.6 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 150 TPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQS-----PRGAYSAPQAQR 196
+PD + Q + +G S G+P YG + + P G Y P Q+
Sbjct: 295 SPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQ 346
>UNIPROTKB|I3LH22 [details] [associations]
symbol:LOC100514264 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU915617
Ensembl:ENSSSCT00000023009 OMA:QALEDHI Uniprot:I3LH22
Length = 161
Score = 130 (50.8 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL + + + + + F I E VI+ D+ T +S+G+GF+TF +PE A
Sbjct: 7 KLFVGGLNFNSDKQALEDHISSFRPISEVVIVKDRETQRSRGFGFITFTNPEHASNVMRA 66
Query: 77 PN-PVIDGRRANCNIA 91
N +DGR+ + + A
Sbjct: 67 MNGESLDGRQIHVDHA 82
Score = 36 (17.7 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 169 STPMGSPYYYGYSLQSPRGAYS 190
S P G Y YGY G+ S
Sbjct: 117 SRPGGYVYGYGYGKSRDYGSRS 138
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 35/108 (32%), Positives = 52/108 (48%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL + T + + +F FG I E V++ D+ T +S+G+GF+TF +PE A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 77 PN-PVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQGGAPSYG 123
N +DGR+ + A Y + GG YG
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGGAFGAHGRGRSY-SRGGGDQGYG 113
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 158 (60.7 bits), Expect = 9.2e-11, P = 9.2e-11
Identities = 24/68 (35%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T ++++ YF +FG++++ + D TG+S+G+GFV F++ ES + D
Sbjct: 31 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 90
Query: 77 PNPVIDGR 84
++G+
Sbjct: 91 KEHKLNGK 98
Score = 128 (50.1 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARR 72
K+FVGGL+ +TP E++R YF FG++ + D T K +G+ F+TF++ E ++
Sbjct: 116 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 171
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 132 (51.5 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 35/87 (40%), Positives = 49/87 (56%)
Query: 8 SQFGDTT-FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRD 66
SQ DT+ VFVG L+ E TE+++ F FG I +A ++ D TGKSKGYGFV+F +
Sbjct: 88 SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYN 147
Query: 67 PESARRACDNPNPV-IDGRRANCNIAS 92
A A + + GR+ N A+
Sbjct: 148 KLDAENAIVHMGGQWLGGRQIRTNWAT 174
Score = 87 (35.7 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 25/72 (34%), Positives = 34/72 (47%)
Query: 18 VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP 77
V+ GG+A + MR+ F FG I+E + +K GY FV F ESA A +
Sbjct: 207 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSV 260
Query: 78 N-PVIDGRRANC 88
N I+G C
Sbjct: 261 NGTTIEGHVVKC 272
Score = 75 (31.5 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 22/63 (34%), Positives = 30/63 (47%)
Query: 151 PDYG-YHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGPSYLYY 209
P YG Y QP + Q +G +P + + G+ Q P+G AP PP+ AG Y
Sbjct: 317 PPYGVYGQP-WNQQGFGVDQSPSAA-WMGGFGAQPPQG--QAPPPVIPPPNQAGYGMASY 372
Query: 210 PTQ 212
TQ
Sbjct: 373 QTQ 375
Score = 49 (22.3 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 20/66 (30%), Positives = 26/66 (39%)
Query: 155 YHQPQYYHQ-MYGTTSTP----MGSPY-YYGYSL-QSPRGAYSAPQAQRMPPSPAGPSYL 207
Y PQ Y Q M P G P+ G+ + QSP A+ + P A P +
Sbjct: 300 YGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMGGFGAQPPQGQAPPPVI 359
Query: 208 YYPTQA 213
P QA
Sbjct: 360 PPPNQA 365
Score = 47 (21.6 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 150 TPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQS-----PRGAYSAPQAQR 196
+PD + Q + +G S G+P YG + + P G Y P Q+
Sbjct: 278 SPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQ 329
>UNIPROTKB|F1SI86 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:CU469305 Ensembl:ENSSSCT00000017510 Uniprot:F1SI86
Length = 295
Score = 147 (56.8 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 27/69 (39%), Positives = 44/69 (63%)
Query: 4 PHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVT 63
P ++G ++FVGG+ ++T ++R++F Q+G + E I++D+ G SKGYGFVT
Sbjct: 33 PTSAPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVT 91
Query: 64 FRDPESARR 72
F E A+R
Sbjct: 92 FETQEDAQR 100
Score = 48 (22.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 164 MYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPS 200
MY TTST G PY Y + + +P+ +PPS
Sbjct: 140 MYLTTST--GYPYTYHNGV----AYFHSPEVTSVPPS 170
Score = 45 (20.9 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 22/76 (28%), Positives = 29/76 (38%)
Query: 145 GYP-TYTPDYGY-HQPQYYH-----QMYGTTSTPM--GSPYYY--GYSLQSPRGAYSAPQ 193
GYP TY Y H P+ +S+P+ P Y Y Q+P
Sbjct: 147 GYPYTYHNGVAYFHSPEVTSVPPSWPSRSISSSPVMVAQPVYQQPAYHYQAPAQCLPGQW 206
Query: 194 AQRMPPSPAGP-SYLY 208
+P SPA S+LY
Sbjct: 207 QWGVPQSPASSASFLY 222
Score = 42 (19.8 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 153 YGYHQPQY-YHQMYGTTSTPMGSP 175
Y H Q YHQ+Y +++ M +P
Sbjct: 257 YSDHGVQATYHQVYASSAIAMPAP 280
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 132 (51.5 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 35/87 (40%), Positives = 49/87 (56%)
Query: 8 SQFGDTT-FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRD 66
SQ DT+ VFVG L+ E TE+++ F FG I +A ++ D TGKSKGYGFV+F +
Sbjct: 88 SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYN 147
Query: 67 PESARRACDNPNPV-IDGRRANCNIAS 92
A A + + GR+ N A+
Sbjct: 148 KLDAENAIVHMGGQWLGGRQIRTNWAT 174
Score = 87 (35.7 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 25/72 (34%), Positives = 34/72 (47%)
Query: 18 VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP 77
V+ GG+A + MR+ F FG I+E + +K GY FV F ESA A +
Sbjct: 207 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSV 260
Query: 78 N-PVIDGRRANC 88
N I+G C
Sbjct: 261 NGTTIEGHVVKC 272
Score = 75 (31.5 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 22/63 (34%), Positives = 30/63 (47%)
Query: 151 PDYG-YHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGPSYLYY 209
P YG Y QP + Q +G +P + + G+ Q P+G AP PP+ AG Y
Sbjct: 322 PPYGVYGQP-WNQQGFGVDQSPSAA-WMGGFGAQPPQG--QAPPPVIPPPNQAGYGMASY 377
Query: 210 PTQ 212
TQ
Sbjct: 378 QTQ 380
Score = 49 (22.3 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 20/66 (30%), Positives = 26/66 (39%)
Query: 155 YHQPQYYHQ-MYGTTSTP----MGSPY-YYGYSL-QSPRGAYSAPQAQRMPPSPAGPSYL 207
Y PQ Y Q M P G P+ G+ + QSP A+ + P A P +
Sbjct: 305 YGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMGGFGAQPPQGQAPPPVI 364
Query: 208 YYPTQA 213
P QA
Sbjct: 365 PPPNQA 370
>UNIPROTKB|F1S420 [details] [associations]
symbol:F1S420 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU914278 Ensembl:ENSSSCT00000015327 OMA:NHEVAGS Uniprot:F1S420
Length = 300
Score = 159 (61.0 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 24/59 (40%), Positives = 43/59 (72%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACD 75
K+FVGGL+W+T ++++ YF +FG++++ I D NTG+S+G+GF+ F+D S + +
Sbjct: 83 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVIE 141
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 152 (58.6 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 24/68 (35%), Positives = 45/68 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T +++ Y +FG++++ I +D TG+S+G+GFV F+D S + +
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 77 PNPVIDGR 84
+DG+
Sbjct: 90 KEHKLDGK 97
Score = 116 (45.9 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
KVFVGGL+ +T E+++ YF FG+I + D T + +G+ F+T+ D E ++ ++
Sbjct: 115 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 174
Query: 77 PNPVIDGRRANCNIA 91
I + +A
Sbjct: 175 RYHQIGSGKCEIKVA 189
Score = 39 (18.8 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 160 YYHQMYGTTSTPMGSPYYY-GY 180
YY Q YG ++ G Y GY
Sbjct: 234 YYDQGYGNYNSAYGGDQNYSGY 255
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 132 (51.5 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 35/87 (40%), Positives = 49/87 (56%)
Query: 8 SQFGDTT-FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRD 66
SQ DT+ VFVG L+ E TE+++ F FG I +A ++ D TGKSKGYGFV+F +
Sbjct: 105 SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYN 164
Query: 67 PESARRACDNPNPV-IDGRRANCNIAS 92
A A + + GR+ N A+
Sbjct: 165 KLDAENAIVHMGGQWLGGRQIRTNWAT 191
Score = 87 (35.7 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 25/72 (34%), Positives = 34/72 (47%)
Query: 18 VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP 77
V+ GG+A + MR+ F FG I+E + +K GY FV F ESA A +
Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSV 277
Query: 78 N-PVIDGRRANC 88
N I+G C
Sbjct: 278 NGTTIEGHVVKC 289
Score = 75 (31.5 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 22/63 (34%), Positives = 30/63 (47%)
Query: 151 PDYG-YHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGPSYLYY 209
P YG Y QP + Q +G +P + + G+ Q P+G AP PP+ AG Y
Sbjct: 334 PPYGVYGQP-WNQQGFGVDQSPSAA-WMGGFGAQPPQG--QAPPPVIPPPNQAGYGMASY 389
Query: 210 PTQ 212
TQ
Sbjct: 390 QTQ 392
Score = 49 (22.3 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 20/66 (30%), Positives = 26/66 (39%)
Query: 155 YHQPQYYHQ-MYGTTSTP----MGSPY-YYGYSL-QSPRGAYSAPQAQRMPPSPAGPSYL 207
Y PQ Y Q M P G P+ G+ + QSP A+ + P A P +
Sbjct: 317 YGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMGGFGAQPPQGQAPPPVI 376
Query: 208 YYPTQA 213
P QA
Sbjct: 377 PPPNQA 382
Score = 47 (21.6 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 150 TPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQS-----PRGAYSAPQAQR 196
+PD + Q + +G S G+P YG + + P G Y P Q+
Sbjct: 295 SPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQ 346
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 132 (51.5 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 35/87 (40%), Positives = 49/87 (56%)
Query: 8 SQFGDTT-FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRD 66
SQ DT+ VFVG L+ E TE+++ F FG I +A ++ D TGKSKGYGFV+F +
Sbjct: 105 SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYN 164
Query: 67 PESARRACDNPNPV-IDGRRANCNIAS 92
A A + + GR+ N A+
Sbjct: 165 KLDAENAIVHMGGQWLGGRQIRTNWAT 191
Score = 87 (35.7 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 25/72 (34%), Positives = 34/72 (47%)
Query: 18 VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP 77
V+ GG+A + MR+ F FG I+E + +K GY FV F ESA A +
Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSV 277
Query: 78 N-PVIDGRRANC 88
N I+G C
Sbjct: 278 NGTTIEGHVVKC 289
Score = 75 (31.5 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 22/63 (34%), Positives = 30/63 (47%)
Query: 151 PDYG-YHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGPSYLYY 209
P YG Y QP + Q +G +P + + G+ Q P+G AP PP+ AG Y
Sbjct: 334 PPYGVYGQP-WNQQGFGVDQSPSAA-WMGGFGAQPPQG--QAPPPVIPPPNQAGYGMASY 389
Query: 210 PTQ 212
TQ
Sbjct: 390 QTQ 392
Score = 49 (22.3 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 20/66 (30%), Positives = 26/66 (39%)
Query: 155 YHQPQYYHQ-MYGTTSTP----MGSPY-YYGYSL-QSPRGAYSAPQAQRMPPSPAGPSYL 207
Y PQ Y Q M P G P+ G+ + QSP A+ + P A P +
Sbjct: 317 YGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMGGFGAQPPQGQAPPPVI 376
Query: 208 YYPTQA 213
P QA
Sbjct: 377 PPPNQA 382
Score = 47 (21.6 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 150 TPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQS-----PRGAYSAPQAQR 196
+PD + Q + +G S G+P YG + + P G Y P Q+
Sbjct: 295 SPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQ 346
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 35/108 (32%), Positives = 52/108 (48%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL + T + + +F FG I E V++ D+ T +S+G+GF+TF +PE A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
Query: 77 PN-PVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQGGAPSYG 123
N +DGR+ + A Y + GG YG
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGGGFGAHGRGRSY-SRGGGDQGYG 113
>FB|FBgn0064117 [details] [associations]
symbol:CG33714 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GeneTree:ENSGT00390000008624 RefSeq:NP_001027083.1
RefSeq:NP_001027084.1 UniGene:Dm.234 SMR:Q0KHQ1 STRING:Q0KHQ1
EnsemblMetazoa:FBtr0091703 EnsemblMetazoa:FBtr0091704
GeneID:3772560 KEGG:dme:Dmel_CG33714 UCSC:CG33714-RA
FlyBase:FBgn0064117 InParanoid:Q0KHQ1 OMA:GHRELRN OrthoDB:EOG4X0K91
NextBio:854180 Uniprot:Q0KHQ1
Length = 90
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 27/71 (38%), Positives = 42/71 (59%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
++FVG L W +E+R YF +FG ++ A +I DK TG SKGYGFV+F + + +
Sbjct: 16 RIFVGNLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSKGYGFVSFNSLTALEKIENE 75
Query: 77 PNPVIDGRRAN 87
+++G N
Sbjct: 76 QKHILEGNYLN 86
>UNIPROTKB|E9PSF1 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955 HGNC:HGNC:15818
IPI:IPI00974044 ProteinModelPortal:E9PSF1 SMR:E9PSF1
Ensembl:ENST00000342690 ArrayExpress:E9PSF1 Bgee:E9PSF1
Uniprot:E9PSF1
Length = 77
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 27/43 (62%), Positives = 34/43 (79%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTG 54
DTTFTK+FVGGL + T +R+YFE FGDI EAV+I+D+ TG
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTG 72
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 28/70 (40%), Positives = 46/70 (65%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+++T + + F ++G I E V++ D+ T +S+G+GFVTF + E A+ A
Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66
Query: 77 PN-PVIDGRR 85
N +DGR+
Sbjct: 67 MNGKTVDGRQ 76
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL + T + + +F FG I E V++ D+ T +S+G+GF+TF +PE A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 77 PN-PVIDGRR 85
N +DGR+
Sbjct: 67 MNGESLDGRQ 76
>UNIPROTKB|Q96E39 [details] [associations]
symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
Length = 390
Score = 138 (53.6 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 27/69 (39%), Positives = 43/69 (62%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL ET + + F ++G I+E ++I D+ T KS+G+ FVTF P A+ A +
Sbjct: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 77 PN-PVIDGR 84
N +DG+
Sbjct: 69 MNGKSLDGK 77
Score = 65 (27.9 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 23/79 (29%), Positives = 34/79 (43%)
Query: 141 YQPFGYPTYTPDY---GYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRM 197
Y+ +G+ + DY GY Y + + P G Y Y +S + SAP +
Sbjct: 243 YRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSY--ESYGNSRSAPLTRGP 300
Query: 198 PPSPAGPS-YLYYPTQAEG 215
PPS G S Y Y + +G
Sbjct: 301 PPSYGGSSRYDDYSSSRDG 319
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 150 (57.9 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 29/69 (42%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+++T E +R +FEQ+G + + V++ D NT +S+G+GFVT+ E A N
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 66
Query: 77 PNP-VIDGR 84
P +DGR
Sbjct: 67 ARPHKVDGR 75
Score = 122 (48.0 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVG +T +R YFEQ+G I I++D+ +GK +G+ FVTF D +S +
Sbjct: 96 TVKKIFVGE---DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 152
Query: 74 CDNPNPVIDGRRANCNI 90
++G NC +
Sbjct: 153 VIQKYHTVNGH--NCEV 167
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 147 (56.8 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 24/68 (35%), Positives = 43/68 (63%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL W+T + +R YF ++G + + I+ D TG+S+G+GF++F P S
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219
Query: 77 PNPVIDGR 84
+ ++DG+
Sbjct: 220 QH-ILDGK 226
Score = 145 (56.1 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 24/60 (40%), Positives = 41/60 (68%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGG+ + +E +F Q+G I++A ++ DK+TG+S+G+GFVT+ ++ R C N
Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN 303
Score = 56 (24.8 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 19/60 (31%), Positives = 22/60 (36%)
Query: 141 YQPFGYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPS 200
Y P P DY +YY QM T G Y Y Q + A P MPP+
Sbjct: 364 YNPMMNPQAMTDYYQKMQEYYQQMQKQT----GMDYTQMYQQQMQQMAMMMP-GFAMPPN 418
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 158 (60.7 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 24/68 (35%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T ++++ YF +FG++++ + D TG+S+G+GFV F++ ES + D
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 77 PNPVIDGR 84
++G+
Sbjct: 158 KEHKLNGK 165
Score = 128 (50.1 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARR 72
K+FVGGL+ +TP E++R YF FG++ + D T K +G+ F+TF++ E ++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 34/108 (31%), Positives = 51/108 (47%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL + T + + +F FG I E V++ D+ T +S+G+GF+TF +PE A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRA 66
Query: 77 PN-PVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQGGAPSYG 123
N +DGR+ + A Y + GG YG
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGGAFGAHGRGRSY-SRGGGDQGYG 113
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 160 (61.4 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 35/86 (40%), Positives = 53/86 (61%)
Query: 8 SQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDP 67
SQ + T T VFVG L+W + + + FE++G I+ A +I D +G+SKGYG+V F P
Sbjct: 256 SQDSNETCT-VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 68 ESARRA-CDNPNPVIDGRRANCNIAS 92
E+A+ A N IDGR N ++++
Sbjct: 315 EAAKAAVAANGTKEIDGRMVNLDLSN 340
Score = 111 (44.1 bits), Expect = 0.00092, P = 0.00092
Identities = 25/80 (31%), Positives = 44/80 (55%)
Query: 5 HYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTF 64
++ Q + + T VFVG L++ +++ F GDI + +D +G+ KG+G+VTF
Sbjct: 356 NFGDQLSEPSDT-VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
Query: 65 RDPESARRACDNPNPVIDGR 84
D +SA++ + I GR
Sbjct: 415 SDIDSAKKCVEMNGHFIAGR 434
>TAIR|locus:2172144 [details] [associations]
symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
Uniprot:Q9FIU6
Length = 156
Score = 125 (49.1 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 26/69 (37%), Positives = 42/69 (60%)
Query: 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPE-SARRAC 74
T +FV GL+ T +E +R F QFG++ +A +++D+ +G SKG+GFV + E SA+
Sbjct: 56 TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
Query: 75 DNPNPVIDG 83
+DG
Sbjct: 116 GMDGKFLDG 124
Score = 37 (18.1 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 155 YHQPQYYHQMYGTTSTPMGSPYYYG 179
Y +P+ Q Y + M P YYG
Sbjct: 131 YARPREQSQSYQPQNN-MSRPPYYG 154
>RGD|1565256 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0070062
"extracellular vesicular exosome" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
response to interleukin-1" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
Uniprot:Q4V898
Length = 390
Score = 135 (52.6 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 26/69 (37%), Positives = 43/69 (62%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL ET + + F ++G I+E +++ D+ T KS+G+ FVTF P A+ A +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 77 PN-PVIDGR 84
N +DG+
Sbjct: 69 MNGKSLDGK 77
Score = 68 (29.0 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 23/79 (29%), Positives = 34/79 (43%)
Query: 141 YQPFGYPTYTPDY---GYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRM 197
Y+ +G+ + DY GY Y + + P G Y Y +S + SAP +
Sbjct: 243 YRDYGHSSSRDDYPSRGYSDRDGYGRERDYSDHPSGGSYRDSY--ESYGNSRSAPPTRGP 300
Query: 198 PPSPAGPS-YLYYPTQAEG 215
PPS G S Y Y + +G
Sbjct: 301 PPSYGGSSRYDDYSSSRDG 319
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 154 (59.3 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL++ET E +R +FEQ+G + + V++ D NT +S+G+GFVT+ E A N
Sbjct: 34 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 92
Query: 77 PNP-VIDGR 84
P +DGR
Sbjct: 93 ARPHKVDGR 101
Score = 141 (54.7 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFEQ+G I I++D+ +GK +G+ FVTF D +S +
Sbjct: 122 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 181
Query: 74 CDNPNPVIDGRRANCNI 90
++G NC +
Sbjct: 182 VIQKYHTVNGH--NCEV 196
>DICTYBASE|DDB_G0279539 [details] [associations]
symbol:DDB_G0279539 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0279539 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000031 eggNOG:COG1404
RefSeq:XP_001732991.1 ProteinModelPortal:B0G128
EnsemblProtists:DDB0234241 GeneID:8622096 KEGG:ddi:DDB_G0279539
OMA:MSKDEND Uniprot:B0G128
Length = 373
Score = 146 (56.5 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 18 VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP 77
VFV +A E+++ F + GD+LEAV++ +K++G++KGYGFV F A+ A + P
Sbjct: 12 VFVSDIARGVTDEQLKEEFSKIGDVLEAVVVKNKHSGETKGYGFVKFYHMADAQHAIETP 71
Query: 78 NPVI--DG 83
NP + DG
Sbjct: 72 NPPLFKDG 79
Score = 51 (23.0 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 165 YGTTSTPMGSP---YYYGYSLQSPRGAYSAPQAQRMPPSPAG 203
Y +TP+ +P Y+Y + P+ Y PQ + P +G
Sbjct: 265 YFAANTPLAAPPYDYHYYFPGSVPQDYYYTPQIPIVDPRRSG 306
Score = 41 (19.5 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 15/57 (26%), Positives = 22/57 (38%)
Query: 156 HQPQYYHQMYGTTSTPMGSPY--YYGYSLQSPRGAYSAPQAQRMPPSPAGPSYLYYP 210
H+ + YH Y TP +PY Y + P+ Y Q + P Y + P
Sbjct: 322 HKKEMYHP-YPMV-TPTTNPYAKYDTFGYPPPQDRYGKTQGGK----PQQSKYRFSP 372
Score = 38 (18.4 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 141 YQPFGYPTYTPDYGYHQ 157
Y FGYP YG Q
Sbjct: 343 YDTFGYPPPQDRYGKTQ 359
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 156 (60.0 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 31/69 (44%), Positives = 45/69 (65%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL +ET E +R +FEQ+G + E V++ D NT +S+G+GFVT+ E A N
Sbjct: 15 KLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 73
Query: 77 PNP-VIDGR 84
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 120 (47.3 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPES 69
K+FVGG+ +T +R Y EQ+G I I++D+ +GK +G+ FVTF D +S
Sbjct: 101 KIFVGGIKEDTEEHYLRDYSEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDYDS 153
>UNIPROTKB|F1RQ90 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071347 "cellular response to interleukin-1"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
Uniprot:F1RQ90
Length = 390
Score = 135 (52.6 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 26/69 (37%), Positives = 43/69 (62%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL ET + + F ++G I+E +++ D+ T KS+G+ FVTF P A+ A +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 77 PN-PVIDGR 84
N +DG+
Sbjct: 69 MNGKSLDGK 77
Score = 67 (28.6 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 23/79 (29%), Positives = 34/79 (43%)
Query: 141 YQPFGYPTYTPDY---GYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRM 197
Y+ +G+ + DY GY Y + + P G Y Y +S + SAP +
Sbjct: 242 YRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSY--ESYGNSRSAPPTRGP 299
Query: 198 PPSPAGPS-YLYYPTQAEG 215
PPS G S Y Y + +G
Sbjct: 300 PPSYGGSSRYDDYSSSRDG 318
>UNIPROTKB|D3JUI8 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9913 "Bos taurus" [GO:0071347
"cellular response to interleukin-1" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
"extracellular vesicular exosome" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001047 "core promoter
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
NextBio:20869035 Uniprot:D3JUI8
Length = 391
Score = 135 (52.6 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 26/69 (37%), Positives = 43/69 (62%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL ET + + F ++G I+E +++ D+ T KS+G+ FVTF P A+ A +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 77 PN-PVIDGR 84
N +DG+
Sbjct: 69 MNGKSLDGK 77
Score = 67 (28.6 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 23/79 (29%), Positives = 34/79 (43%)
Query: 141 YQPFGYPTYTPDY---GYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRM 197
Y+ +G+ + DY GY Y + + P G Y Y +S + SAP +
Sbjct: 243 YRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSY--ESYGNSRSAPPTRGP 300
Query: 198 PPSPAGPS-YLYYPTQAEG 215
PPS G S Y Y + +G
Sbjct: 301 PPSYGGSSRYDDYSSSRDG 319
>UNIPROTKB|P38159 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
Length = 391
Score = 135 (52.6 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 26/69 (37%), Positives = 43/69 (62%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL ET + + F ++G I+E +++ D+ T KS+G+ FVTF P A+ A +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 77 PN-PVIDGR 84
N +DG+
Sbjct: 69 MNGKSLDGK 77
Score = 67 (28.6 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 23/79 (29%), Positives = 34/79 (43%)
Query: 141 YQPFGYPTYTPDY---GYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRM 197
Y+ +G+ + DY GY Y + + P G Y Y +S + SAP +
Sbjct: 243 YRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSY--ESYGNSRSAPPTRGP 300
Query: 198 PPSPAGPS-YLYYPTQAEG 215
PPS G S Y Y + +G
Sbjct: 301 PPSYGGSSRYDDYSSSRDG 319
>UNIPROTKB|A5A6M3 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9598 "Pan troglodytes" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
Length = 391
Score = 135 (52.6 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 26/69 (37%), Positives = 43/69 (62%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL ET + + F ++G I+E +++ D+ T KS+G+ FVTF P A+ A +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 77 PN-PVIDGR 84
N +DG+
Sbjct: 69 MNGKSLDGK 77
Score = 67 (28.6 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 23/79 (29%), Positives = 34/79 (43%)
Query: 141 YQPFGYPTYTPDY---GYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRM 197
Y+ +G+ + DY GY Y + + P G Y Y +S + SAP +
Sbjct: 243 YRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSY--ESYGNSRSAPPTRGP 300
Query: 198 PPSPAGPS-YLYYPTQAEG 215
PPS G S Y Y + +G
Sbjct: 301 PPSYGGSSRYDDYSSSRDG 319
>UNIPROTKB|Q4R7F0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
Uniprot:Q4R7F0
Length = 391
Score = 135 (52.6 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 26/69 (37%), Positives = 43/69 (62%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL ET + + F ++G I+E +++ D+ T KS+G+ FVTF P A+ A +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 77 PN-PVIDGR 84
N +DG+
Sbjct: 69 MNGKSLDGK 77
Score = 67 (28.6 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 23/79 (29%), Positives = 34/79 (43%)
Query: 141 YQPFGYPTYTPDY---GYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRM 197
Y+ +G+ + DY GY Y + + P G Y Y +S + SAP +
Sbjct: 243 YRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSY--ESYGNSRSAPPTRGP 300
Query: 198 PPSPAGPS-YLYYPTQAEG 215
PPS G S Y Y + +G
Sbjct: 301 PPSYGGSSRYDDYSSSRDG 319
>MGI|MGI:1343044 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X chromosome"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:0071347 "cellular response to
interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
Genevestigator:Q9WV02 Uniprot:Q9WV02
Length = 391
Score = 135 (52.6 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 26/69 (37%), Positives = 43/69 (62%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL ET + + F ++G I+E +++ D+ T KS+G+ FVTF P A+ A +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 77 PN-PVIDGR 84
N +DG+
Sbjct: 69 MNGKSLDGK 77
Score = 67 (28.6 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 23/79 (29%), Positives = 34/79 (43%)
Query: 141 YQPFGYPTYTPDY---GYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRM 197
Y+ +G+ + DY GY Y + + P G Y Y +S + SAP +
Sbjct: 243 YRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSY--ESYGNSRSAPPTRGP 300
Query: 198 PPSPAGPS-YLYYPTQAEG 215
PPS G S Y Y + +G
Sbjct: 301 PPSYGGSSRYDDYSSSRDG 319
>UNIPROTKB|E2R068 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
Uniprot:E2R068
Length = 392
Score = 135 (52.6 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 26/69 (37%), Positives = 43/69 (62%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL ET + + F ++G I+E +++ D+ T KS+G+ FVTF P A+ A +
Sbjct: 10 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 69
Query: 77 PN-PVIDGR 84
N +DG+
Sbjct: 70 MNGKSLDGK 78
Score = 67 (28.6 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 23/79 (29%), Positives = 34/79 (43%)
Query: 141 YQPFGYPTYTPDY---GYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRM 197
Y+ +G+ + DY GY Y + + P G Y Y +S + SAP +
Sbjct: 244 YRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSY--ESYGNSRSAPPTRGP 301
Query: 198 PPSPAGPS-YLYYPTQAEG 215
PPS G S Y Y + +G
Sbjct: 302 PPSYGGSSRYDDYSSSRDG 320
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 27/70 (38%), Positives = 47/70 (67%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+++T + + + F ++G I E V++ D+ T +S+G+GFVTF + + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 77 PN-PVIDGRR 85
N +DGR+
Sbjct: 67 MNGKSVDGRQ 76
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 27/70 (38%), Positives = 47/70 (67%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+++T + + + F ++G I E V++ D+ T +S+G+GFVTF + + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 77 PN-PVIDGRR 85
N +DGR+
Sbjct: 67 MNGKSVDGRQ 76
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
+++VG L + + +R FE FG I V++ D +TG+SKGYGF+TF D E ARRA +
Sbjct: 14 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 73
Query: 77 PN 78
N
Sbjct: 74 LN 75
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 27/70 (38%), Positives = 47/70 (67%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+++T + + + F ++G I E V++ D+ T +S+G+GFVTF + + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 77 PN-PVIDGRR 85
N +DGR+
Sbjct: 67 MNGKSVDGRQ 76
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 27/70 (38%), Positives = 47/70 (67%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+++T + + + F ++G I E V++ D+ T +S+G+GFVTF + + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 77 PN-PVIDGRR 85
N +DGR+
Sbjct: 67 MNGKSVDGRQ 76
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 27/70 (38%), Positives = 47/70 (67%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+++T + + + F ++G I E V++ D+ T +S+G+GFVTF + + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 77 PN-PVIDGRR 85
N +DGR+
Sbjct: 67 MNGKSVDGRQ 76
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 27/70 (38%), Positives = 47/70 (67%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+++T + + + F ++G I E V++ D+ T +S+G+GFVTF + + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 77 PN-PVIDGRR 85
N +DGR+
Sbjct: 67 MNGKSVDGRQ 76
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 27/70 (38%), Positives = 47/70 (67%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+++T + + + F ++G I E V++ D+ T +S+G+GFVTF + + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 77 PN-PVIDGRR 85
N +DGR+
Sbjct: 67 MNGKSVDGRQ 76
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 27/70 (38%), Positives = 47/70 (67%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+++T + + + F ++G I E V++ D+ T +S+G+GFVTF + + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 77 PN-PVIDGRR 85
N +DGR+
Sbjct: 67 MNGKSVDGRQ 76
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 27/70 (38%), Positives = 47/70 (67%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+++T + + + F ++G I E V++ D+ T +S+G+GFVTF + + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 77 PN-PVIDGRR 85
N +DGR+
Sbjct: 67 MNGKSVDGRQ 76
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 27/70 (38%), Positives = 47/70 (67%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+++T + + + F ++G I E V++ D+ T +S+G+GFVTF + + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 77 PN-PVIDGRR 85
N +DGR+
Sbjct: 67 MNGKSVDGRQ 76
>DICTYBASE|DDB_G0275027 [details] [associations]
symbol:DDB_G0275027 "SRA stem-loop-interacting
RNA-binding protein, mitochondrial" species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_643856.1
ProteinModelPortal:Q86I71 PRIDE:Q86I71 EnsemblProtists:DDB0167377
GeneID:8619907 KEGG:ddi:DDB_G0275027 InParanoid:Q86I71 OMA:QFESKES
Uniprot:Q86I71
Length = 91
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
+ K+FV L W E ++ +F QFG+I + ++ D+ T +SKG+GFV F ES + A
Sbjct: 2 SLNKIFVTRLPWSVCKEALKNHFSQFGNIKDCYVVLDRVTKRSKGFGFVQFESKESVQNA 61
Query: 74 CDNPNPVIDGRRANCNIA 91
++ N I+GR+ N A
Sbjct: 62 INSDNE-INGRKLVVNEA 78
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 27/70 (38%), Positives = 47/70 (67%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+++T + + + F ++G I E V++ D+ T +S+G+GFVTF + + A+ A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 77 PN-PVIDGRR 85
N +DGR+
Sbjct: 67 MNGKSVDGRQ 76
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 27/70 (38%), Positives = 47/70 (67%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+++T + + + F ++G I E V++ D+ T +S+G+GFVTF + + A+ A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 77 PN-PVIDGRR 85
N +DGR+
Sbjct: 67 MNGKSVDGRQ 76
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 27/70 (38%), Positives = 47/70 (67%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+++T + + + F ++G I E V++ D+ T +S+G+GFVTF + + A+ A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 77 PN-PVIDGRR 85
N +DGR+
Sbjct: 67 MNGKSVDGRQ 76
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 152 (58.6 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL++ET E +R +FEQ+G + + V++ D NT +S+G+GFVT+ A D
Sbjct: 39 KLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAAMDA 98
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 99 RPHKVDGR 106
Score = 145 (56.1 bits), Expect = 9.1e-09, Sum P(2) = 9.1e-09
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARR 72
+T K+FVGG+ +T E +R YF QFG I E I+++KN+ K +G+ F+TF D ++ R
Sbjct: 126 STVKKMFVGGIKEDTDEEHLREYFGQFGKIDEVNIMTEKNSDKRRGFAFITFDDHDAVDR 185
Query: 73 ACDNPNPVIDGRRANCNI 90
++G NC +
Sbjct: 186 IVIQKYHTVNGH--NCEV 201
Score = 39 (18.8 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 117 GGAPSYGG 124
GG P+YGG
Sbjct: 278 GGGPNYGG 285
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 157 (60.3 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 33/92 (35%), Positives = 55/92 (59%)
Query: 1 MAYPHYRSQFGDTTFTK-VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGY 59
+A+P R+Q T TK +FVGGL+ T E++++YFEQF + +A+++ DK T + +G+
Sbjct: 94 VAFPR-RAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFEKVDDAMLMFDKTTNRHRGF 152
Query: 60 GFVTFRDPESARRACDNPNPVIDGRRANCNIA 91
GFVTF + + C+ I+ + C A
Sbjct: 153 GFVTFESEDIVEKVCEIHFHEINNKMVECKKA 184
Score = 155 (59.6 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T E +R YF QFG++ E +++ D T +S+G+GFVTF D +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 77 PNPVIDGRRANCNIA 91
+D + + +A
Sbjct: 81 SRHELDSKTIDPKVA 95
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 156 (60.0 bits), Expect = 5.6e-10, P = 5.6e-10
Identities = 28/68 (41%), Positives = 45/68 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL++ET E +R +FEQ+G + + V++ D NT +S+G+GFVT+ E A +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 75 TPHKVDGR 82
Score = 139 (54.0 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 28/77 (36%), Positives = 43/77 (55%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFEQ+G I I++D+ +GK +G+ FVTF D +S +
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 74 CDNPNPVIDGRRANCNI 90
+ G NC +
Sbjct: 163 VIQKYHTVKGH--NCEV 177
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 152 (58.6 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 24/68 (35%), Positives = 45/68 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T +++ Y +FG++++ I +D TG+S+G+GFV F+D S + +
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 77 PNPVIDGR 84
+DG+
Sbjct: 209 KEHKLDGK 216
Score = 116 (45.9 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
KVFVGGL+ +T E+++ YF FG+I + D T + +G+ F+T+ D E ++ ++
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
Query: 77 PNPVIDGRRANCNIA 91
I + +A
Sbjct: 294 RYHQIGSGKCEIKVA 308
Score = 39 (18.8 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 160 YYHQMYGTTSTPMGSPYYY-GY 180
YY Q YG ++ G Y GY
Sbjct: 353 YYDQGYGNYNSAYGGDQNYSGY 374
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 152 (58.6 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 24/68 (35%), Positives = 45/68 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T +++ Y +FG++++ I +D TG+S+G+GFV F+D S + +
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 77 PNPVIDGR 84
+DG+
Sbjct: 209 KEHKLDGK 216
Score = 116 (45.9 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
KVFVGGL+ +T E+++ YF FG+I + D T + +G+ F+T+ D E ++ ++
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
Query: 77 PNPVIDGRRANCNIA 91
I + +A
Sbjct: 294 RYHQIGSGKCEIKVA 308
Score = 39 (18.8 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 160 YYHQMYGTTSTPMGSPYYY-GY 180
YY Q YG ++ G Y GY
Sbjct: 353 YYDQGYGNYNSAYGGDQNYSGY 374
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 152 (58.6 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 24/68 (35%), Positives = 45/68 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T +++ Y +FG++++ I +D TG+S+G+GFV F+D S + +
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 77 PNPVIDGR 84
+DG+
Sbjct: 209 KEHKLDGK 216
Score = 116 (45.9 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
KVFVGGL+ +T E+++ YF FG+I + D T + +G+ F+T+ D E ++ ++
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
Query: 77 PNPVIDGRRANCNIA 91
I + +A
Sbjct: 294 RYHQIGSGKCEIKVA 308
Score = 39 (18.8 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 160 YYHQMYGTTSTPMGSPYYY-GY 180
YY Q YG ++ G Y GY
Sbjct: 353 YYDQGYGNYNSAYGGDQNYSGY 374
>UNIPROTKB|K7EJ88 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000591830 Uniprot:K7EJ88
Length = 321
Score = 128 (50.1 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
K+FVGG+ E+R YF++FG + E V+I D + +G+GF+TF D +S +A
Sbjct: 57 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 113
Score = 70 (29.7 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 23/69 (33%), Positives = 30/69 (43%)
Query: 143 PF-GYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSP 201
PF Y TP G+ PQ + Q YG + P S +GY P AP PP+
Sbjct: 204 PFTSYIVSTPPGGFPPPQGFPQGYG--APPQFS---FGYGPPPPPPDQFAPPGVPPPPAT 258
Query: 202 AGPSYLYYP 210
G + L +P
Sbjct: 259 PGAAPLAFP 267
Score = 41 (19.5 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 158 PQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPSPAGP--SYL 207
P + Q YG P G G ++ G Y P A R P P P SY+
Sbjct: 166 PPTWQQGYG----PQGMWVPAGQAI----GGYGPPPAGRGAPPPPPPFTSYI 209
Score = 38 (18.4 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 171 PMGSPYYYGYSLQSPRGAYSAPQ 193
P P + Y + +P G + PQ
Sbjct: 199 PPPPPPFTSYIVSTPPGGFPPPQ 221
Score = 38 (18.4 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 147 PTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSL 182
PT PD+ Y Q Y Y + P G ++ YSL
Sbjct: 281 PTAQPDFPYGQ--YGLGSY--SPAPPGCGPHFVYSL 312
>TAIR|locus:2027438 [details] [associations]
symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
Genevestigator:Q9FZ84 Uniprot:Q9FZ84
Length = 155
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T +K+FVGGL+ T E ++ F FG I++AV++ D+ +G S+G+GFVT+ E A A
Sbjct: 34 TPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNA 93
Query: 74 CDN-PNPVIDGR 84
N +DGR
Sbjct: 94 MQAMQNKELDGR 105
>UNIPROTKB|C1JGV6 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:DAAA02005516 EMBL:DAAA02005517 EMBL:DAAA02005518 EMBL:FJ623266
IPI:IPI00867153 UniGene:Bt.25777 Ensembl:ENSBTAT00000044801
Uniprot:C1JGV6
Length = 295
Score = 144 (55.7 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 26/69 (37%), Positives = 44/69 (63%)
Query: 4 PHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVT 63
P ++G ++FVGG+ ++T ++R++F Q+G + E I++D+ G SKGYGFVT
Sbjct: 33 PTSAPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVT 91
Query: 64 FRDPESARR 72
F E A++
Sbjct: 92 FETQEDAQK 100
Score = 45 (20.9 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 14/63 (22%), Positives = 25/63 (39%)
Query: 149 YTPDYGYHQPQYYHQMYGTTSTPMGSPYYY--GYSLQSPRGAYSAPQAQRMPPSPAGPS- 205
+TP+ P + + ++ + P Y Y Q+P +P SPA +
Sbjct: 160 HTPEVTSVPPPWPSRSISSSPVMVAQPVYQQPAYHYQAPAQCLPGQWQWNVPQSPASSAP 219
Query: 206 YLY 208
+LY
Sbjct: 220 FLY 222
Score = 42 (19.8 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 153 YGYHQPQY-YHQMYGTTSTPMGSP 175
Y H Q YHQ+Y +++ M +P
Sbjct: 257 YSDHGVQATYHQVYASSAIAMPAP 280
>MGI|MGI:1922638 [details] [associations]
symbol:Boll "bol, boule-like (Drosophila)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0007126
"meiosis" evidence=ISO] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=ISO] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0045948 "positive regulation of translational initiation"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1922638 GO:GO:0007275
GO:GO:0005737 GO:GO:0030154 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 CTD:66037
eggNOG:NOG260394 HOGENOM:HOG000095250 HOVERGEN:HBG048761
OrthoDB:EOG4MPHQQ EMBL:AF272859 EMBL:AK016125 EMBL:BY103870
IPI:IPI00403643 IPI:IPI00886395 RefSeq:NP_001106838.1
RefSeq:NP_083543.2 UniGene:Mm.483408 ProteinModelPortal:Q924M5
SMR:Q924M5 STRING:Q924M5 PhosphoSite:Q924M5 PRIDE:Q924M5
DNASU:75388 Ensembl:ENSMUST00000159398 GeneID:75388 KEGG:mmu:75388
UCSC:uc007bal.1 UCSC:uc007bam.1 GeneTree:ENSGT00530000063480
InParanoid:Q924M5 NextBio:342892 Bgee:Q924M5 CleanEx:MM_BOLL
Genevestigator:Q924M5 GermOnline:ENSMUSG00000025977 Uniprot:Q924M5
Length = 281
Score = 142 (55.0 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 24/64 (37%), Positives = 43/64 (67%)
Query: 9 QFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPE 68
++G ++FVGG+ ++T ++R++F Q+G + E I++D+ G SKGYGF+TF E
Sbjct: 26 RYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITFETQE 84
Query: 69 SARR 72
A++
Sbjct: 85 DAQK 88
Score = 47 (21.6 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 164 MYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPS 200
MY TTST G PY Y + + P+ +PPS
Sbjct: 128 MYLTTST--GYPYTYHNGV----AYFHTPEVTSVPPS 158
Score = 45 (20.9 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 148 TYTPD-YGYHQPQY-YHQMYGTTSTPMGSP 175
T P+ Y H Q YHQ+Y +++ M +P
Sbjct: 239 TSVPEPYSDHGVQAAYHQVYASSAIAMPAP 268
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 154 (59.3 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL++ET E +R +FEQ+G + + V++ D NT +S+G+GFVT+ E A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 73
Query: 77 PNP-VIDGR 84
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 141 (54.7 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFEQ+G I I++D+ +GK +G+ FVTF D +S +
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 74 CDNPNPVIDGRRANCNI 90
++G NC +
Sbjct: 163 VIQKYHTVNGH--NCEV 177
>UNIPROTKB|G3MY63 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063480 EMBL:DAAA02005516 EMBL:DAAA02005517
EMBL:DAAA02005518 Ensembl:ENSBTAT00000065390 Uniprot:G3MY63
Length = 271
Score = 144 (55.7 bits), Expect = 8.0e-10, Sum P(2) = 8.0e-10
Identities = 26/69 (37%), Positives = 44/69 (63%)
Query: 4 PHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVT 63
P ++G ++FVGG+ ++T ++R++F Q+G + E I++D+ G SKGYGFVT
Sbjct: 33 PTSAPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVT 91
Query: 64 FRDPESARR 72
F E A++
Sbjct: 92 FETQEDAQK 100
Score = 42 (19.8 bits), Expect = 8.0e-10, Sum P(2) = 8.0e-10
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 153 YGYHQPQY-YHQMYGTTSTPMGSP 175
Y H Q YHQ+Y +++ M +P
Sbjct: 233 YSDHGVQATYHQVYASSAIAMPAP 256
>UNIPROTKB|Q8N9W6 [details] [associations]
symbol:BOLL "Protein boule-like" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008494
"translation activator activity" evidence=IDA] [GO:0045948
"positive regulation of translational initiation" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126 "meiosis"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0007126
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 EMBL:CH471063
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0008494
EMBL:AF272858 EMBL:AM295005 EMBL:AK058099 EMBL:AK093453
EMBL:AK097795 EMBL:AC011997 EMBL:BC033674 IPI:IPI00056506
IPI:IPI00377133 IPI:IPI00396276 IPI:IPI00871244 RefSeq:NP_149019.1
RefSeq:NP_932074.1 UniGene:Hs.169797 ProteinModelPortal:Q8N9W6
SMR:Q8N9W6 IntAct:Q8N9W6 STRING:Q8N9W6 PhosphoSite:Q8N9W6
DMDM:44887719 PRIDE:Q8N9W6 DNASU:66037 Ensembl:ENST00000321801
Ensembl:ENST00000392296 Ensembl:ENST00000433157 GeneID:66037
KEGG:hsa:66037 UCSC:uc002uur.2 UCSC:uc002uus.2 UCSC:uc002uut.2
UCSC:uc002uuu.1 CTD:66037 GeneCards:GC02M198591 H-InvDB:HIX0030239
HGNC:HGNC:14273 HPA:HPA018678 MIM:606165 neXtProt:NX_Q8N9W6
PharmGKB:PA25397 eggNOG:NOG260394 HOGENOM:HOG000095250
HOVERGEN:HBG048761 OrthoDB:EOG4MPHQQ GenomeRNAi:66037 NextBio:67546
ArrayExpress:Q8N9W6 Bgee:Q8N9W6 CleanEx:HS_BOLL
Genevestigator:Q8N9W6 GermOnline:ENSG00000152430 GO:GO:0045948
Uniprot:Q8N9W6
Length = 283
Score = 144 (55.7 bits), Expect = 8.4e-10, Sum P(2) = 8.4e-10
Identities = 26/69 (37%), Positives = 44/69 (63%)
Query: 4 PHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVT 63
P ++G ++FVGG+ ++T ++R++F Q+G + E I++D+ G SKGYGFVT
Sbjct: 21 PTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVT 79
Query: 64 FRDPESARR 72
F E A++
Sbjct: 80 FETQEDAQK 88
Score = 43 (20.2 bits), Expect = 8.4e-10, Sum P(2) = 8.4e-10
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 148 TYTPD-YGYHQPQY-YHQMYGTTSTPMGSP 175
T P+ Y H Q YHQ+Y ++ M +P
Sbjct: 239 TSVPEPYSDHGVQATYHQVYAPSAITMPAP 268
Score = 41 (19.5 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 155 YHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAP 192
Y QP Y++Q +T P + +S+ P A SAP
Sbjct: 176 YQQPAYHYQ-----ATTQYLPGQWQWSVPQP-SASSAP 207
>UNIPROTKB|F8VTQ5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022641
ProteinModelPortal:F8VTQ5 SMR:F8VTQ5 PRIDE:F8VTQ5
Ensembl:ENST00000551702 ArrayExpress:F8VTQ5 Bgee:F8VTQ5
Uniprot:F8VTQ5
Length = 145
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFEQ+G I I++D+ +GK +G+ FVTF D +S +
Sbjct: 54 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 113
Query: 74 CDNPNPVIDGRRANCNI 90
++G NC +
Sbjct: 114 VIQKYHTVNGH--NCEV 128
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 146 (56.5 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 28/69 (40%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA-CD 75
K+F+GGL++ET + +R +FE++G + + V++ D T +S+G+GFVT+ E A C
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 76 NPNPVIDGR 84
P+ V DGR
Sbjct: 96 RPHKV-DGR 103
Score = 132 (51.5 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFE++G I ++ D+ +GK +G+ FVTF D ++ +
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Query: 74 CDNPNPVIDGRRANCNI 90
I+G NC +
Sbjct: 184 VVQKYHTINGH--NCEV 198
Score = 43 (20.2 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 152 DYGYHQPQYYHQMYGTT--STPMGSPYYYGYSLQSPRGAYSA 191
+Y Q Y M G + GSPY GY G Y +
Sbjct: 276 NYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGS 317
>RGD|1559527 [details] [associations]
symbol:Boll "bol, boule-like (Drosophila)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0007126 "meiosis"
evidence=IEA;ISO] [GO:0008494 "translation activator activity"
evidence=IEA;ISO] [GO:0045948 "positive regulation of translational
initiation" evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559527
GO:GO:0007126 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0008494 CTD:66037 OrthoDB:EOG4MPHQQ GO:GO:0045948
GeneTree:ENSGT00530000063480 EMBL:CH473965 EMBL:AC103419
EMBL:AC122091 IPI:IPI00884580 RefSeq:NP_001106841.1
RefSeq:XP_003750748.1 UniGene:Rn.145717 Ensembl:ENSRNOT00000021299
GeneID:100911373 GeneID:501143 KEGG:rno:100911373 KEGG:rno:501143
UCSC:RGD:1559527 NextBio:708414 Uniprot:D4ACT7
Length = 293
Score = 142 (55.0 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 24/64 (37%), Positives = 43/64 (67%)
Query: 9 QFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPE 68
++G ++FVGG+ ++T ++R++F Q+G + E I++D+ G SKGYGF+TF E
Sbjct: 38 RYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITFETQE 96
Query: 69 SARR 72
A++
Sbjct: 97 DAQK 100
Score = 47 (21.6 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 164 MYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRMPPS 200
MY TTST G PY Y + + P+ +PPS
Sbjct: 140 MYLTTST--GYPYTYHNGV----AYFHTPEVTSVPPS 170
Score = 42 (19.8 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 153 YGYHQPQY-YHQMYGTTSTPMGSP 175
Y H Q YHQ+Y +++ M +P
Sbjct: 257 YSDHGVQAAYHQVYASSAIAMPAP 280
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 146 (56.5 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 28/69 (40%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA-CD 75
K+F+GGL++ET + +R +FE++G + + V++ D T +S+G+GFVT+ E A C
Sbjct: 14 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 73
Query: 76 NPNPVIDGR 84
P+ V DGR
Sbjct: 74 RPHKV-DGR 81
Score = 132 (51.5 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFE++G I ++ D+ +GK +G+ FVTF D ++ +
Sbjct: 102 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 161
Query: 74 CDNPNPVIDGRRANCNI 90
I+G NC +
Sbjct: 162 VVQKYHTINGH--NCEV 176
Score = 43 (20.2 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 152 DYGYHQPQYYHQMYGTT--STPMGSPYYYGYSLQSPRGAYSA 191
+Y Q Y M G + GSPY GY G Y +
Sbjct: 278 NYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGS 319
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 154 (59.3 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACD 75
+K+FVGG+++ T +R F ++G++++A II D+ TG+S+G+ FVTF E A A
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query: 76 NPNPVIDGRRANCNIAS 92
+ GRR N A+
Sbjct: 94 LDGQDLHGRRIRVNYAT 110
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 156 (60.0 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 51/201 (25%), Positives = 82/201 (40%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL ++E R YFE +G + +AVI+ D+ T + +G+GFV+F +S
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHK 170
Query: 77 PNPVIDGRRANCNIA----SLXXXXXXXXXXXXXXXNIPYHQQQGGAPSYGGVAASLXXX 132
++G++ A + P + GG+ G V ++
Sbjct: 171 TFHDLNGKQVEVKRALPKDANPGIASGGGRGSGGAGGFPGYGGSGGSGYEGRVDSNRYMQ 230
Query: 133 XXXXXSVIYQPFGYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAP 192
S Y P+G Y YGY + +G P G+PY G G S P
Sbjct: 231 PQNTGSG-YPPYGGSGYGTGYGYGSNGVGYGGFGGYGNPAGAPY--GNPSVPGAGFGSGP 287
Query: 193 QAQRMPPSPAGPSYLYYPTQA 213
++ +P+G + Y A
Sbjct: 288 RSSWGAQAPSGYGNVGYGNAA 308
Score = 154 (59.3 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GG++W+T +R YF FG++L+ ++ +K TG+ +G+GFV F DP R +
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 77 PNPVIDGR 84
+ ID R
Sbjct: 67 KHH-IDNR 73
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 145 (56.1 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 27/70 (38%), Positives = 47/70 (67%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+++T + + + F ++G I E V++ D+ T +S+G+GFVTF + + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 77 PN-PVIDGRR 85
N +DGR+
Sbjct: 67 MNGKSVDGRQ 76
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 154 (59.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL++ET E +R +FEQ+G + + V++ D NT +S+G+GFVT+ E A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 73
Query: 77 PNP-VIDGR 84
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 141 (54.7 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFEQ+G I I++D+ +GK +G+ FVTF D +S +
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 74 CDNPNPVIDGRRANCNI 90
++G NC +
Sbjct: 163 VIQKYHTVNGH--NCEV 177
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 154 (59.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL++ET E +R +FEQ+G + + V++ D NT +S+G+GFVT+ E A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 73
Query: 77 PNP-VIDGR 84
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 141 (54.7 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFEQ+G I I++D+ +GK +G+ FVTF D +S +
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 74 CDNPNPVIDGRRANCNI 90
++G NC +
Sbjct: 163 VIQKYHTVNGH--NCEV 177
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 154 (59.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL++ET E +R +FEQ+G + + V++ D NT +S+G+GFVT+ E A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 73
Query: 77 PNP-VIDGR 84
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 141 (54.7 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFEQ+G I I++D+ +GK +G+ FVTF D +S +
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 74 CDNPNPVIDGRRANCNI 90
++G NC +
Sbjct: 163 VIQKYHTVNGH--NCEV 177
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 154 (59.3 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL++ET E +R +FEQ+G + + V++ D NT +S+G+GFVT+ E A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 73
Query: 77 PNP-VIDGR 84
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 141 (54.7 bits), Expect = 9.1e-08, P = 9.1e-08
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFEQ+G I I++D+ +GK +G+ FVTF D +S +
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 74 CDNPNPVIDGRRANCNI 90
++G NC +
Sbjct: 163 VIQKYHTVNGH--NCEV 177
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 154 (59.3 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL++ET E +R +FEQ+G + + V++ D NT +S+G+GFVT+ E A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 73
Query: 77 PNP-VIDGR 84
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 141 (54.7 bits), Expect = 9.1e-08, P = 9.1e-08
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFEQ+G I I++D+ +GK +G+ FVTF D +S +
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 74 CDNPNPVIDGRRANCNI 90
++G NC +
Sbjct: 163 VIQKYHTVNGH--NCEV 177
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 154 (59.3 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL++ET E +R +FEQ+G + + V++ D NT +S+G+GFVT+ E A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 73
Query: 77 PNP-VIDGR 84
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 141 (54.7 bits), Expect = 9.1e-08, P = 9.1e-08
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFEQ+G I I++D+ +GK +G+ FVTF D +S +
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 74 CDNPNPVIDGRRANCNI 90
++G NC +
Sbjct: 163 VIQKYHTVNGH--NCEV 177
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 154 (59.3 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL++ET E +R +FEQ+G + + V++ D NT +S+G+GFVT+ E A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 73
Query: 77 PNP-VIDGR 84
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 141 (54.7 bits), Expect = 9.1e-08, P = 9.1e-08
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFEQ+G I I++D+ +GK +G+ FVTF D +S +
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 74 CDNPNPVIDGRRANCNI 90
++G NC +
Sbjct: 163 VIQKYHTVNGH--NCEV 177
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 154 (59.3 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL++ET E +R +FEQ+G + + V++ D NT +S+G+GFVT+ E A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 73
Query: 77 PNP-VIDGR 84
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 141 (54.7 bits), Expect = 9.1e-08, P = 9.1e-08
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFEQ+G I I++D+ +GK +G+ FVTF D +S +
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 74 CDNPNPVIDGRRANCNI 90
++G NC +
Sbjct: 163 VIQKYHTVNGH--NCEV 177
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 154 (59.3 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL++ET E +R +FEQ+G + + V++ D NT +S+G+GFVT+ E A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 73
Query: 77 PNP-VIDGR 84
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 141 (54.7 bits), Expect = 9.1e-08, P = 9.1e-08
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFEQ+G I I++D+ +GK +G+ FVTF D +S +
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 74 CDNPNPVIDGRRANCNI 90
++G NC +
Sbjct: 163 VIQKYHTVNGH--NCEV 177
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 154 (59.3 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL++ET E +R +FEQ+G + + V++ D NT +S+G+GFVT+ E A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 73
Query: 77 PNP-VIDGR 84
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 141 (54.7 bits), Expect = 9.1e-08, P = 9.1e-08
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFEQ+G I I++D+ +GK +G+ FVTF D +S +
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 74 CDNPNPVIDGRRANCNI 90
++G NC +
Sbjct: 163 VIQKYHTVNGH--NCEV 177
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 154 (59.3 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL++ET E +R +FEQ+G + + V++ D NT +S+G+GFVT+ E A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAM-N 73
Query: 77 PNP-VIDGR 84
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 139 (54.0 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 28/77 (36%), Positives = 43/77 (55%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFEQ+G I I++D+ +GK +G+ FVTF D S +
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKI 162
Query: 74 CDNPNPVIDGRRANCNI 90
++G NC +
Sbjct: 163 VIQKYHTVNGH--NCEV 177
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+ VGGL+++T + + + F ++G I E V++ D+ T +S+G+GFVTF + + A+ A
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 77 PN-PVIDGRR 85
N +DGR+
Sbjct: 67 MNGKSVDGRQ 76
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+ VGGL+++T + + + F ++G I E V++ D+ T +S+G+GFVTF + + A+ A
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 77 PN-PVIDGRR 85
N +DGR+
Sbjct: 67 MNGKSVDGRQ 76
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+ VGGL+++T + + + F ++G I E V++ D+ T +S+G+GFVTF + + A+ A
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 77 PN-PVIDGRR 85
N +DGR+
Sbjct: 67 MNGKSVDGRQ 76
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 154 (59.3 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL++ET E +R +FEQ+G + + V++ D NT +S+G+GFVT+ E A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 73
Query: 77 PNP-VIDGR 84
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 141 (54.7 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFEQ+G I I++D+ +GK +G+ FVTF D +S +
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 74 CDNPNPVIDGRRANCNI 90
++G NC +
Sbjct: 163 VIQKYHTVNGH--NCEV 177
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 146 (56.5 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 28/69 (40%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA-CD 75
K+F+GGL++ET + +R +FE++G + + V++ D T +S+G+GFVT+ E A C
Sbjct: 14 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 73
Query: 76 NPNPVIDGR 84
P+ V DGR
Sbjct: 74 RPHKV-DGR 81
Score = 132 (51.5 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFE++G I ++ D+ +GK +G+ FVTF D ++ +
Sbjct: 102 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 161
Query: 74 CDNPNPVIDGRRANCNI 90
I+G NC +
Sbjct: 162 VVQKYHTINGH--NCEV 176
Score = 43 (20.2 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 152 DYGYHQPQYYHQMYGTT--STPMGSPYYYGYSLQSPRGAYSA 191
+Y Q Y M G + GSPY GY G Y +
Sbjct: 313 NYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGS 354
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 153 (58.9 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 24/68 (35%), Positives = 46/68 (67%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+W+T ++++ YF +FG++++ + D TG+S+G+GFV F++ ES +
Sbjct: 55 KMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVITQ 114
Query: 77 PNPVIDGR 84
++G+
Sbjct: 115 KEHKLNGK 122
Score = 126 (49.4 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 20/56 (35%), Positives = 38/56 (67%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARR 72
K+FVGGL+ +TP E++R YF+ +G++ + + T K +G+ F+TF++ E ++
Sbjct: 140 KIFVGGLSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKK 195
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 23/57 (40%), Positives = 41/57 (71%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
K+FVGGL+++T + + + F ++G I E V++ D+ T +S+G+GFVTF + + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 23/57 (40%), Positives = 41/57 (71%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
K+FVGGL+++T + + + F ++G I E V++ D+ T +S+G+GFVTF + + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
>ZFIN|ZDB-GENE-050306-36 [details] [associations]
symbol:zgc:110796 "zgc:110796" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050306-36 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG107480 KO:K14411
GeneTree:ENSGT00390000002308 EMBL:CABZ01074485 EMBL:BC090772
IPI:IPI00555445 RefSeq:NP_001013351.1 UniGene:Dr.87721 SMR:Q5CZN9
STRING:Q5CZN9 Ensembl:ENSDART00000060532 GeneID:503755
KEGG:dre:503755 eggNOG:NOG285314 InParanoid:Q5CZN9 OMA:MEADGTQ
OrthoDB:EOG4GHZQT NextBio:20866299 Uniprot:Q5CZN9
Length = 94
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 22/50 (44%), Positives = 38/50 (76%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRD 66
K+F+GGL+W+T E ++ YF +FG++ E +++ D T +S+G+GFVT+ D
Sbjct: 23 KMFIGGLSWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGFVTYVD 72
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 154 (59.3 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 55/204 (26%), Positives = 81/204 (39%)
Query: 8 SQFGDTTFTK-VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRD 66
S G T+ TK +FVGGL+ T EE + YFE+FG + V++ D T + +G+GFVT+
Sbjct: 111 SSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDS 170
Query: 67 PESARRACDNPNPVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQGGAPSYGGVA 126
+S + + +R A NIP PSY
Sbjct: 171 EDSVEVVMQSNFHELSDKRVEVKRA---IPKEGIQSNNGNAVNIP--------PSYSSFQ 219
Query: 127 ASLXXXXXXXXSVIYQPFGYPTYTPDYGYHQP-QYYHQMYGTTSTPMGSPYYYGYSLQSP 185
A+ ++ Q +P P +GYH Q YG T + + + P
Sbjct: 220 ATPYVPEQNGYGMVLQ---FPP--PVFGYHHNVQAVQYPYGYQFTAQVANVSWNNPIMQP 274
Query: 186 RGAYSAPQAQRMPPSPAGPSYLYY 209
G Y AP PP+ Y+ Y
Sbjct: 275 TGFYCAPPHPTPPPTN-NLGYIQY 297
Score = 142 (55.0 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 25/48 (52%), Positives = 37/48 (77%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTF 64
K+FVGG+A ET E +++YF ++G +LEAV+ +K TGK +G+GFV F
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRF 54
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 146 (56.5 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 28/69 (40%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA-CD 75
K+F+GGL++ET + +R +FE++G + + V++ D T +S+G+GFVT+ E A C
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 76 NPNPVIDGR 84
P+ V DGR
Sbjct: 96 RPHKV-DGR 103
Score = 132 (51.5 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFE++G I ++ D+ +GK +G+ FVTF D ++ +
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Query: 74 CDNPNPVIDGRRANCNI 90
I+G NC +
Sbjct: 184 VVQKYHTINGH--NCEV 198
Score = 43 (20.2 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 152 DYGYHQPQYYHQMYGTT--STPMGSPYYYGYSLQSPRGAYSA 191
+Y Q Y M G + GSPY GY G Y +
Sbjct: 334 NYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGS 375
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 146 (56.5 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 28/69 (40%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA-CD 75
K+F+GGL++ET + +R +FE++G + + V++ D T +S+G+GFVT+ E A C
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 76 NPNPVIDGR 84
P+ V DGR
Sbjct: 96 RPHKV-DGR 103
Score = 132 (51.5 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFE++G I ++ D+ +GK +G+ FVTF D ++ +
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Query: 74 CDNPNPVIDGRRANCNI 90
I+G NC +
Sbjct: 184 VVQKYHTINGH--NCEV 198
Score = 43 (20.2 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 152 DYGYHQPQYYHQMYGTT--STPMGSPYYYGYSLQSPRGAYSA 191
+Y Q Y M G + GSPY GY G Y +
Sbjct: 334 NYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGS 375
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 146 (56.5 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 28/69 (40%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA-CD 75
K+F+GGL++ET + +R +FE++G + + V++ D T +S+G+GFVT+ E A C
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 76 NPNPVIDGR 84
P+ V DGR
Sbjct: 96 RPHKV-DGR 103
Score = 132 (51.5 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFE++G I ++ D+ +GK +G+ FVTF D ++ +
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Query: 74 CDNPNPVIDGRRANCNI 90
I+G NC +
Sbjct: 184 VVQKYHTINGH--NCEV 198
Score = 43 (20.2 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 152 DYGYHQPQYYHQMYGTT--STPMGSPYYYGYSLQSPRGAYSA 191
+Y Q Y M G + GSPY GY G Y +
Sbjct: 335 NYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGS 376
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 146 (56.5 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 28/69 (40%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA-CD 75
K+F+GGL++ET + +R +FE++G + + V++ D T +S+G+GFVT+ E A C
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 76 NPNPVIDGR 84
P+ V DGR
Sbjct: 96 RPHKV-DGR 103
Score = 132 (51.5 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFE++G I ++ D+ +GK +G+ FVTF D ++ +
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Query: 74 CDNPNPVIDGRRANCNI 90
I+G NC +
Sbjct: 184 VVQKYHTINGH--NCEV 198
Score = 43 (20.2 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 152 DYGYHQPQYYHQMYGTT--STPMGSPYYYGYSLQSPRGAYSA 191
+Y Q Y M G + GSPY GY G Y +
Sbjct: 335 NYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGS 376
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 146 (56.5 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 28/69 (40%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA-CD 75
K+F+GGL++ET + +R +FE++G + + V++ D T +S+G+GFVT+ E A C
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 76 NPNPVIDGR 84
P+ V DGR
Sbjct: 96 RPHKV-DGR 103
Score = 132 (51.5 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFE++G I ++ D+ +GK +G+ FVTF D ++ +
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Query: 74 CDNPNPVIDGRRANCNI 90
I+G NC +
Sbjct: 184 VVQKYHTINGH--NCEV 198
Score = 43 (20.2 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 152 DYGYHQPQYYHQMYGTT--STPMGSPYYYGYSLQSPRGAYSA 191
+Y Q Y M G + GSPY GY G Y +
Sbjct: 336 NYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGS 377
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 154 (59.3 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL++ET E +R +FEQ+G + + V++ D NT +S+G+GFVT+ E A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 73
Query: 77 PNP-VIDGR 84
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 141 (54.7 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFEQ+G I I++D+ +GK +G+ FVTF D +S +
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 74 CDNPNPVIDGRRANCNI 90
++G NC +
Sbjct: 163 VIQKYHTVNGH--NCEV 177
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 154 (59.3 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL++ET E +R +FEQ+G + + V++ D NT +S+G+GFVT+ E A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 73
Query: 77 PNP-VIDGR 84
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 141 (54.7 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFEQ+G I I++D+ +GK +G+ FVTF D +S +
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 74 CDNPNPVIDGRRANCNI 90
++G NC +
Sbjct: 163 VIQKYHTVNGH--NCEV 177
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 154 (59.3 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL++ET E +R +FEQ+G + + V++ D NT +S+G+GFVT+ E A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 73
Query: 77 PNP-VIDGR 84
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 141 (54.7 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFEQ+G I I++D+ +GK +G+ FVTF D +S +
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 74 CDNPNPVIDGRRANCNI 90
++G NC +
Sbjct: 163 VIQKYHTVNGH--NCEV 177
>UNIPROTKB|F2Z2G3 [details] [associations]
symbol:BOLL "Protein boule-like" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011997
HGNC:HGNC:14273 IPI:IPI01018166 ProteinModelPortal:F2Z2G3
SMR:F2Z2G3 Ensembl:ENST00000430004 OMA:YQAPAQC ArrayExpress:F2Z2G3
Bgee:F2Z2G3 Uniprot:F2Z2G3
Length = 333
Score = 144 (55.7 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 26/69 (37%), Positives = 44/69 (63%)
Query: 4 PHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVT 63
P ++G ++FVGG+ ++T ++R++F Q+G + E I++D+ G SKGYGFVT
Sbjct: 21 PTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVT 79
Query: 64 FRDPESARR 72
F E A++
Sbjct: 80 FETQEDAQK 88
Score = 43 (20.2 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 148 TYTPD-YGYHQPQY-YHQMYGTTSTPMGSP 175
T P+ Y H Q YHQ+Y ++ M +P
Sbjct: 261 TSVPEPYSDHGVQATYHQVYAPSAITMPAP 290
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 154 (59.3 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL++ET E +R +FEQ+G + + V++ D NT +S+G+GFVT+ E A N
Sbjct: 36 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 94
Query: 77 PNP-VIDGR 84
P +DGR
Sbjct: 95 ARPHKVDGR 103
Score = 141 (54.7 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFEQ+G I I++D+ +GK +G+ FVTF D +S +
Sbjct: 124 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 183
Query: 74 CDNPNPVIDGRRANCNI 90
++G NC +
Sbjct: 184 VIQKYHTVNGH--NCEV 198
>WB|WBGene00019249 [details] [associations]
symbol:H28G03.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002308 EMBL:FO081568 RefSeq:NP_741783.1
UniGene:Cel.17692 ProteinModelPortal:H2L0D0 SMR:H2L0D0 PRIDE:H2L0D0
EnsemblMetazoa:H28G03.1a.1 EnsemblMetazoa:H28G03.1a.2 GeneID:180791
KEGG:cel:CELE_H28G03.1 CTD:180791 WormBase:H28G03.1a OMA:HIVNERK
Uniprot:H2L0D0
Length = 336
Score = 153 (58.9 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 31/75 (41%), Positives = 49/75 (65%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRAC-D 75
K+F+GGL+ +T E++ YF Q+G +++A++I D NT S+G+GFVTF SA A D
Sbjct: 71 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMND 130
Query: 76 NPNPV----IDGRRA 86
P+ + +D +RA
Sbjct: 131 RPHKLGGKTVDSKRA 145
>MGI|MGI:1343045 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
selection" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
Length = 388
Score = 134 (52.2 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 26/69 (37%), Positives = 43/69 (62%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL ET + + F ++G I+E +++ D+ T KS+G+ FVTF P A+ A +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 77 PN-PVIDGR 84
N +DG+
Sbjct: 69 MNGKSLDGK 77
Score = 60 (26.2 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 22/79 (27%), Positives = 33/79 (41%)
Query: 141 YQPFGYPTYTPDY---GYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSPRGAYSAPQAQRM 197
Y+ + + + DY GY Y + + P G Y Y +S + SAP +
Sbjct: 240 YRDYSHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSY--ESYGNSRSAPPTRGP 297
Query: 198 PPSPAGPS-YLYYPTQAEG 215
PPS G S Y Y + +G
Sbjct: 298 PPSYGGSSRYDDYSSSRDG 316
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 147 (56.8 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 15 FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRAC 74
F K+F+GGL++ET E +R Y+EQ+G + + V++ D + +S+G+GFVTF A
Sbjct: 16 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 75
Query: 75 DNPNPVIDGR 84
IDGR
Sbjct: 76 AARPHTIDGR 85
Score = 142 (55.0 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 34/111 (30%), Positives = 52/111 (46%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFE++G I II+D+ +GK +G+GFVTF D + +
Sbjct: 106 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 165
Query: 74 CDNPNPVIDGRRANCNIA-SLXXXXXXXXXXXXXXXNIPYHQQQGGAPSYG 123
I+G A A S N + +GG ++G
Sbjct: 166 VLQKYHTINGHNAEVRKALSRQEMQEVQNSRSGRGGNFGFGDARGGGGNFG 216
Score = 39 (18.8 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 117 GGAPSYGG 124
GG+P YGG
Sbjct: 253 GGSPGYGG 260
>UNIPROTKB|F1P6I8 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:AAEX03017986 Ensembl:ENSCAFT00000037605 Uniprot:F1P6I8
Length = 295
Score = 144 (55.7 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 26/69 (37%), Positives = 44/69 (63%)
Query: 4 PHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVT 63
P ++G ++FVGG+ ++T ++R++F Q+G + E I++D+ G SKGYGFVT
Sbjct: 33 PTSAPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVT 91
Query: 64 FRDPESARR 72
F E A++
Sbjct: 92 FETQEDAQK 100
Score = 40 (19.1 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 153 YGYHQPQY-YHQMYGTTSTPMGSP 175
Y H Q YHQ+Y ++ M +P
Sbjct: 257 YSDHGVQATYHQVYAPSAIAMPAP 280
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 147 (56.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 34/111 (30%), Positives = 53/111 (47%)
Query: 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73
T K+FVGG+ +T +R YFE++G I II+D+ +GK +G+GFVTF D + +
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 74 CDNPNPVIDGRRANCNIA-SLXXXXXXXXXXXXXXXNIPYHQQQGGAPSYG 123
+ I+G A A S N + +GG ++G
Sbjct: 170 VLQKHHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFG 220
Score = 145 (56.1 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 15 FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRAC 74
F K+F+GGL++ET E +R Y+EQ+G + + V++ D + +S+G+GFVTF A
Sbjct: 20 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 79
Query: 75 DNPNPVIDGR 84
IDGR
Sbjct: 80 AARPHSIDGR 89
Score = 39 (18.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 117 GGAPSYGG 124
GG+P YGG
Sbjct: 257 GGSPGYGG 264
>FB|FBgn0037602 [details] [associations]
symbol:CG8021 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0046331 "lateral inhibition" evidence=IMP]
[GO:0035145 "exon-exon junction complex" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0046331 HSSP:Q14103
GeneTree:ENSGT00390000008624 EMBL:BT031072 EMBL:BT032713
RefSeq:NP_649808.1 UniGene:Dm.36782 SMR:Q9VHP3
EnsemblMetazoa:FBtr0081878 GeneID:41021 KEGG:dme:Dmel_CG8021
UCSC:CG8021-RA FlyBase:FBgn0037602 InParanoid:Q9VHP3 OMA:HVANAEV
OrthoDB:EOG4M0CJB GenomeRNAi:41021 NextBio:821758 Uniprot:Q9VHP3
Length = 91
Score = 137 (53.3 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 25/68 (36%), Positives = 39/68 (57%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVG L W ++E+R YF ++G + A ++ D+ G SK YGFV F ++ A +
Sbjct: 11 KLFVGNLPWTIGSKELRTYFSKYGHVANAEVVFDRQLGLSKHYGFVVFSQRDAFNSASNQ 70
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 71 NTHFLDGR 78
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 137 (53.3 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 27/70 (38%), Positives = 46/70 (65%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL +ET + + + F ++G I E V++ D+ T +S+G+GFVTF + + A+ A
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 77 PN-PVIDGRR 85
N +DGR+
Sbjct: 66 MNGKSVDGRQ 75
>FB|FBgn0011206 [details] [associations]
symbol:bol "boule" species:7227 "Drosophila melanogaster"
[GO:0007140 "male meiosis" evidence=IMP] [GO:0007283
"spermatogenesis" evidence=IMP;TAS] [GO:0048137 "spermatocyte
division" evidence=IMP] [GO:0003729 "mRNA binding"
evidence=ISS;NAS;IMP] [GO:0008315 "meiotic G2/MI transition"
evidence=IMP;TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006417 "regulation of translation"
evidence=IGI] [GO:0045836 "positive regulation of meiosis"
evidence=NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0043204 "perikaryon" evidence=IDA] [GO:0007476 "imaginal
disc-derived wing morphogenesis" evidence=IMP] [GO:0046331 "lateral
inhibition" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 EMBL:AE014296 GO:GO:0006417 GO:GO:0000166
GO:GO:0043204 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0046331
GO:GO:0007140 GO:GO:0007476 eggNOG:NOG260394
GeneTree:ENSGT00530000063480 EMBL:U51858 EMBL:AI063811
EMBL:AY089323 PIR:S68988 RefSeq:NP_523989.1 RefSeq:NP_729456.1
RefSeq:NP_729457.1 RefSeq:NP_729458.1 UniGene:Dm.20499
ProteinModelPortal:Q24207 SMR:Q24207 DIP:DIP-20744N IntAct:Q24207
MINT:MINT-911886 STRING:Q24207 PaxDb:Q24207 PRIDE:Q24207
EnsemblMetazoa:FBtr0076538 EnsemblMetazoa:FBtr0076540 GeneID:39049
KEGG:dme:Dmel_CG4760 UCSC:CG4760-RA CTD:39049 FlyBase:FBgn0011206
InParanoid:Q24207 OMA:NVPTIWP OrthoDB:EOG4S1RQF PhylomeDB:Q24207
ChiTaRS:bol GenomeRNAi:39049 NextBio:811653 Bgee:Q24207
GermOnline:CG4760 GO:GO:0008315 GO:GO:0048137 Uniprot:Q24207
Length = 228
Score = 148 (57.2 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 54/199 (27%), Positives = 80/199 (40%)
Query: 9 QFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPE 68
++G ++FVGG++ +T ++ R F +G + II D+ G SKGYGFVTF +
Sbjct: 26 KYGTLIPNRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR-AGVSKGYGFVTFETEQ 84
Query: 69 SARRA-CDNPNPVIDGRRANCNIASLXXXXXXXXXXXXXXXNIPYHQQQGGAPSYGGVAA 127
A+R D V+ R+ N IA Y+ AP +
Sbjct: 85 EAQRLQADGECVVLRDRKLN--IAPAIKKQPNPLQSIVATNGAVYYTTTPPAP-ISNIPM 141
Query: 128 SLXXXXXXXXSVIYQPF-GYPT-YTPDYGYHQPQY-YHQMYGTTSTPMGSPYYYGYS--L 182
+ +Y P G P Y P +QP Y Y+ + T Y +S L
Sbjct: 142 D------QFAAAVYPPAAGVPAIYPPSAMQYQPFYQYYSVPMNVPTIWPQNYQENHSPLL 195
Query: 183 QSPRGAYSAPQAQRMPPSP 201
SP +P +Q P SP
Sbjct: 196 HSPTSNPHSPHSQSHPQSP 214
WARNING: HSPs involving 673 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.131 0.401 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 259 220 0.00094 112 3 11 23 0.45 33
32 0.40 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 923
No. of states in DFA: 599 (64 KB)
Total size of DFA: 184 KB (2104 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.36u 0.08s 20.44t Elapsed: 00:00:01
Total cpu time: 20.38u 0.08s 20.46t Elapsed: 00:00:01
Start: Sat May 11 04:10:22 2013 End: Sat May 11 04:10:23 2013
WARNINGS ISSUED: 2