BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039503
(259 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H0Z9|RBM38_HUMAN RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2
Length = 239
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/210 (40%), Positives = 113/210 (53%), Gaps = 23/210 (10%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTTFTK+FVGGL + T +R+YFE FGDI EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89
Query: 72 RACDNPNPVIDGRRANCNIASLGRPRPSPPRGRNQGGNIPYHQQQ--------GGAPSY- 122
RAC +PNP+IDGR+AN N+A LG + PR G I Q G P Y
Sbjct: 90 RACKDPNPIIDGRKANVNLAYLG----AKPRSLQTGFAIGVQQLHPTLIQRTYGLTPHYI 145
Query: 123 ---GGVAASLPPPPPPPPSVIYQPFGYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYG 179
V S+ P P PS+ Y +P Y + P Y Q Y ++P + + G
Sbjct: 146 YPPAIVQPSVVIPAAPVPSLSSPYIEYTPASPAYAQYPPATYDQ-YPYAASPATAASFVG 204
Query: 180 YSLQSPRGAYSAPQAQRMPPSPAGPSYLYY 209
YS + + PQA +PAG +++ Y
Sbjct: 205 YSYPA-----AVPQALSA-AAPAGTTFVQY 228
>sp|Q5ZJX4|RBM38_CHICK RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1
Length = 215
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 72/103 (69%), Gaps = 4/103 (3%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTTFTK+FVGGL + T +R+YFE FGDI EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 7 DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 72 RACDNPNPVIDGRRANCNIASLGRPRPSPPRGRNQGGNIPYHQ 114
RAC +PNP+IDGR+AN N+A LG + PR G I Q
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG----AKPRSIQTGFTIGVQQ 105
>sp|Q6DIV4|RBM38_XENTR RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1
Length = 219
Score = 125 bits (313), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 69/87 (79%), Gaps = 1/87 (1%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTTFTK+FVGGL + T +R+YFE FGDI EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAE 66
Query: 72 RACDNPNPVIDGRRANCNIASLG-RPR 97
RAC +PNP+IDGR+AN N+A LG +PR
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPR 93
>sp|Q9I8B3|RB24B_XENLA RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1
Length = 224
Score = 124 bits (312), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 70/91 (76%), Gaps = 1/91 (1%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTT+TK+FVGGL + T +R+YFE FGDI EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 72 RACDNPNPVIDGRRANCNIASLG-RPRPSPP 101
RAC +PNP+IDGR+AN N+A LG +PR P
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPRIMQP 97
>sp|Q6P8A7|RBM24_XENTR RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1
Length = 226
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 70/91 (76%), Gaps = 1/91 (1%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTT+TK+FVGGL + T +R+YFE FGDI EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 72 RACDNPNPVIDGRRANCNIASLG-RPRPSPP 101
RAC +PNP+IDGR+AN N+A LG +PR P
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPRIMQP 97
>sp|Q6GQD3|RB24A_XENLA RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1
Length = 225
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 70/91 (76%), Gaps = 1/91 (1%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTT+TK+FVGGL + T +R+YFE FGDI EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 72 RACDNPNPVIDGRRANCNIASLG-RPRPSPP 101
RAC +PNP+IDGR+AN N+A LG +PR P
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPRIMQP 97
>sp|D3Z4I3|RBM24_MOUSE RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1
Length = 236
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 70/91 (76%), Gaps = 1/91 (1%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTT+TK+FVGGL + T +R+YFE FGDI EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 72 RACDNPNPVIDGRRANCNIASLG-RPRPSPP 101
RAC +PNP+IDGR+AN N+A LG +PR P
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPRIMQP 97
>sp|Q7T3I7|RBM38_XENLA RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2
Length = 214
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTTFTK+FVGGL + T +R+YFE FGDI EAV+I+D+ T KS+GYGFVT D +A
Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAE 66
Query: 72 RACDNPNPVIDGRRANCNIASLG-RPR 97
RAC +PNP+IDGR+AN N+A LG +PR
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPR 93
>sp|Q5ZMA3|RBM24_CHICK RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2
Length = 225
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 70/91 (76%), Gaps = 1/91 (1%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTT+TK+FVGGL + T +R+YFE FGDI EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 72 RACDNPNPVIDGRRANCNIASLG-RPRPSPP 101
RAC +PNP+IDGR+AN N+A LG +PR P
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPRIMQP 97
>sp|Q76LC6|RBM24_DANRE RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1
Length = 230
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 70/91 (76%), Gaps = 1/91 (1%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTT+TK+FVGGL + T +R+YFE FG+I EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66
Query: 72 RACDNPNPVIDGRRANCNIASLG-RPRPSPP 101
RAC +PNP+IDGR+AN N+A LG +PR P
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPRVMQP 97
>sp|Q9BX46|RBM24_HUMAN RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1
Length = 236
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 70/91 (76%), Gaps = 1/91 (1%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTT+TK+FVGGL + T +R+YFE FG+I EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 72 RACDNPNPVIDGRRANCNIASLG-RPRPSPP 101
RAC +PNP+IDGR+AN N+A LG +PR P
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPRIMQP 97
>sp|Q62176|RBM38_MOUSE RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=1 SV=2
Length = 237
Score = 115 bits (287), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 69/87 (79%), Gaps = 1/87 (1%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
DTTFTK+FVGGL + T +R+YFE FGDI EAV+I+D+ TGKS+GYGFVT D +A
Sbjct: 28 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87
Query: 72 RACDNPNPVIDGRRANCNIASLG-RPR 97
RAC +PNP+IDGR+AN N+A LG +PR
Sbjct: 88 RACKDPNPIIDGRKANVNLAYLGAKPR 114
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 84.7 bits (208), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%), Gaps = 3/84 (3%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+WET E + RYF +FGDI++ V++ + +G+S+G+GFVTF DP + N
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 77 PNPVIDGRRAN---CNIASLGRPR 97
+DGR + CN +L +P+
Sbjct: 68 GPHTLDGRTIDPKPCNPRTLQKPK 91
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
KVF+GGL ++R +F ++G + E VI+ D+ KS+G+GF++F + S +
Sbjct: 97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE 156
Query: 77 PNPVIDGRRANCNIA 91
++G++ A
Sbjct: 157 RYINLNGKQVEIKKA 171
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10
PE=2 SV=1
Length = 169
Score = 80.9 bits (198), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
+ FVGGLAW T E+ R F QFG+++++ II+D+ TG+S+G+GFVTF+D +S + A D
Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66
Query: 77 PN-PVIDGRRANCNIA 91
N +DGR N A
Sbjct: 67 MNGKELDGRTITVNEA 82
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana
GN=RBG8 PE=1 SV=1
Length = 169
Score = 80.9 bits (198), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
+ FVGGLAW T E+++R F QFGD++++ II+D+ +G+S+G+GFVTF+D ++ R A +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 77 PN-PVIDGRRANCNIA 91
N +DGR N A
Sbjct: 67 MNGKELDGRVITVNEA 82
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
+ FVGGLAW T E + + F QFGDI ++ II+D+ TG+S+G+GFVTF+D +S R A +
Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66
Query: 77 PN-PVIDGRRANCNIA 91
N +DGR N A
Sbjct: 67 MNGQELDGRNITVNEA 82
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 8/93 (8%)
Query: 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESA 70
G K+FVGGL W T E +R YF Q+G++++ VI+ DK T +S+G+GFV F+DP
Sbjct: 5 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 71 RRACDNPNPVIDGRRANCNIASLGRPRPSPPRG 103
+ +DGR + P+P PRG
Sbjct: 65 GTVLASRPHTLDGRNID--------PKPCTPRG 89
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 9/119 (7%)
Query: 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACD 75
K+FVGG+ E+R YF++FG + E V+I D + +G+GF+TF D +S +A +
Sbjct: 113 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 172
Query: 76 NPNPVIDGRRANCNIASLGRPRPSPPRGRNQGGNIPYHQQQGG--APSYGGVAASLPPP 132
I G++ R P +NQ P Q G APS A PPP
Sbjct: 173 MHFHDIMGKKVEVK-------RAEPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPPP 224
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 8/93 (8%)
Query: 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESA 70
G K+FVGGL W T E +R YF Q+G++++ VI+ DK T +S+G+GFV F+DP
Sbjct: 5 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 71 RRACDNPNPVIDGRRANCNIASLGRPRPSPPRG 103
+ +DGR + P+P PRG
Sbjct: 65 GTVLASRPHTLDGRNID--------PKPCTPRG 89
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACD 75
K+FVGG+ E+R YF++FG + E V+I D + +G+GF+TF D +S +A +
Sbjct: 113 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 172
Query: 76 NPNPVIDGRRANCNIA 91
I G++ A
Sbjct: 173 MHFHDIMGKKVEVKRA 188
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 8/93 (8%)
Query: 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESA 70
G K+FVGGL W T E +R YF Q+G++++ VI+ DK T +S+G+GFV F+DP
Sbjct: 5 GGDEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 71 RRACDNPNPVIDGRRANCNIASLGRPRPSPPRG 103
+ +DGR + P+P PRG
Sbjct: 65 GTVLASRPHTLDGRNID--------PKPCTPRG 89
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACD 75
K+FVGG+ E++ YF +FG + E V+I D + +G+GF+TF D +S +A +
Sbjct: 114 NKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 173
Query: 76 NPNPVIDGRRANCNIASLGRPRPSP-----PRGRNQGGN 109
I G++ A PR S P G NQ G+
Sbjct: 174 MHFHDIMGKKVEVKRA---EPRDSKSQTPGPPGSNQWGS 209
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 4/74 (5%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL WET + +R YFEQFG++L+ ++ D TG+S+G+GF+TF++P+
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 77 PN----PVIDGRRA 86
+ +ID +RA
Sbjct: 224 EHHLDGKIIDPKRA 237
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGG+ + EE R +F QFG +L+A ++ DK+TG+ +G+GFVT+ + +
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 77 PNPVIDGR 84
P I G+
Sbjct: 308 PYITIHGK 315
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+W+T ++++ YF +FG++++ I D NTG+S+G+GF+ F+D S + D
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 136 KEHRLDGR 143
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL E E++R YF QFG+I + D K +G+ F+TF++ + ++ +
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219
Query: 77 PNPVIDGRRANCNIA 91
+ G + +A
Sbjct: 220 KFHTVSGSKCEIKVA 234
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+W+T ++++ YF +FG++++ I D NTG+S+G+GF+ F+D S + D
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 77 PNPVIDGR 84
+DGR
Sbjct: 130 KEHRLDGR 137
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEE-MRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACD 75
K+FVGGL E+PTEE +R YF +FG+I + D K +G+ F+TF++ E ++ +
Sbjct: 154 KIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 76 NPNPVIDGRRANCNIA 91
+ G + +A
Sbjct: 214 KKFHTVSGSKCEIKVA 229
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 50/75 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T E +R YF ++GDI EA+++ D T +S+G+GFVTF DP S +
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 77 PNPVIDGRRANCNIA 91
+DG++ + +A
Sbjct: 90 GTHELDGKKVDPKVA 104
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+ T E+++ YFEQFG I +A+++ DK T + +G+GFVTF+ + + C+
Sbjct: 119 KIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEI 178
Query: 77 PNPVIDGRRANCNIA 91
I+ + C A
Sbjct: 179 HFHEINNKMVECKKA 193
>sp|Q9SIX3|RBG1_ARATH Probable glycine-rich RNA-binding protein 1 OS=Arabidopsis
thaliana GN=RBG1 PE=2 SV=2
Length = 149
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
+ FVGGLAW T + + R F +FG++ ++ II D+ TG+SKG+ FVTF+D +S R A D
Sbjct: 9 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDR 68
Query: 77 PN-PVIDGR 84
N +DGR
Sbjct: 69 MNGQELDGR 77
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 22/154 (14%)
Query: 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARR 72
T K+FVGGL+ T E++++YFEQFG + +A+++ DK T + +G+GFVTF + + +
Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
Query: 73 ACDNPNPVIDGRRANCNIASLGRPRPS--PPRGRNQGGNIPYHQQQ----GGAPSYGGVA 126
C+ I+ + C A +P+ PP R + +PY G Y
Sbjct: 167 VCEIHFHEINNKMVECKKA---QPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGY---- 219
Query: 127 ASLPPPPPPPPSVIYQPFGYPTYTPDYGYHQPQY 160
P V GYP + P YGY P +
Sbjct: 220 ---------PNFVATYGRGYPGFAPSYGYQFPGF 244
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 52/82 (63%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T + +R YF +FG+I E +++ D T +S+G+GFVTF DP S +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 77 PNPVIDGRRANCNIASLGRPRP 98
P+ +D + + +A R +P
Sbjct: 82 PHHELDSKTIDPKVAFPRRAQP 103
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 22/150 (14%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+ T E++++YFEQFG + +A+++ DK T + +G+GFVTF + + + C+
Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 170
Query: 77 PNPVIDGRRANCNIASLGRPRPS--PPRGRNQGGNIPYHQQQ----GGAPSYGGVAASLP 130
I+ + C A +P+ PP R + +PY G Y
Sbjct: 171 HFHEINNKMVECKKA---QPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGY-------- 219
Query: 131 PPPPPPPSVIYQPFGYPTYTPDYGYHQPQY 160
P V GYP + P YGY P +
Sbjct: 220 -----PNFVATYGRGYPGFAPSYGYQFPGF 244
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T + +R YF +FG+I E +++ D T +S+G+GFVTF DP S +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 77 PNPVIDGRRANCNIASLGRPRPSPPR 102
P+ +D + + +A PR + P+
Sbjct: 82 PHHELDSKTIDPKVAF---PRRAQPK 104
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 56/88 (63%), Gaps = 4/88 (4%)
Query: 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACD 75
+K+FVGGL+W T +++ F FG++ EA +I+D+ TG+S+G+GFV+F +SA A
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 76 NPN-PVIDGRRANCNIASLGRPRPSPPR 102
+ ++GR+ N+A+ R S PR
Sbjct: 95 EMDGKELNGRQIRVNLAT---ERSSAPR 119
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
+ FVGGLAW T + F QFG+++++ II+D+ TG+S+G+GFVTF+D +S + A +
Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68
Query: 77 PN-PVIDGRRANCNIA 91
N +DGR N A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
+ FVGGLAW T + F Q+G++L++ II+D+ TG+S+G+GFVTF+D +S + A +
Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68
Query: 77 PN-PVIDGRRANCNIA 91
N +DGR N A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+ T E++++YFEQFG + +A+++ DK T + +G+GFVTF + + C+
Sbjct: 110 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169
Query: 77 PNPVIDGRRANCNIA 91
I+ + C A
Sbjct: 170 HFHEINNKMVECKKA 184
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T E +R YF QFG++ E +++ D T +S+G+GFVTF D +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 77 PNPVIDGRRANCNIA 91
+D + + +A
Sbjct: 81 SRHELDSKTIDPKVA 95
>sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana
GN=RBG7 PE=1 SV=1
Length = 176
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Query: 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESA 70
GD + + FVGGLAW T + F Q+GD++++ II+D+ TG+S+G+GFVTF+D ++
Sbjct: 4 GDVEY-RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAM 62
Query: 71 RRACDNPN-PVIDGRRANCNIA 91
+ A + N +DGR N A
Sbjct: 63 KDAIEGMNGQDLDGRSITVNEA 84
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+ T E+++ YFEQFG + +A+++ DK T + +G+GFVTF + + C+
Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169
Query: 77 PNPVIDGRRANCNIA 91
I+ + C A
Sbjct: 170 HFHEINNKMVECKKA 184
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T E +R YF QFG++ E +++ D T +S+G+GFVTF D +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 77 PNPVIDGRRANCNIA 91
+D + + +A
Sbjct: 81 SRHELDSKTIDPKVA 95
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+ T E+++ YFEQFG + +A+++ DK T + +G+GFVTF + + C+
Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169
Query: 77 PNPVIDGRRANCNIA 91
I+ + C A
Sbjct: 170 HFHEINNKMVECKKA 184
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T E +R YF QFG++ E +++ D T +S+G+GFVTF D +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 77 PNPVIDGRRANCNIA 91
+D + + +A
Sbjct: 81 SRHELDSKTIDPKVA 95
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACD 75
TK+F+GGL+W T +R F FGD+++A +I D+ TG+S+G+GFV F D +A A
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 76 NPN-PVIDGRRANCNIASLGRPRPSPPR 102
+ ++GR N A+ RPS PR
Sbjct: 95 EMDGKELNGRHIRVNPAN---DRPSAPR 119
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
+ FVGGLAW T E + F +G+IL++ +I+D+ TG+S+G+GFVTF S A +N
Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIEN 68
Query: 77 PN-PVIDGRRANCN 89
N +DGR N
Sbjct: 69 MNGKELDGRNITVN 82
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2
PE=2 SV=1
Length = 168
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
+ FVGGLAW T E + + F FG ++++ +I+D+ TG+S+G+GFVTF +S A +N
Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68
Query: 77 PN-PVIDGRRANCNIA 91
N +DGR N A
Sbjct: 69 MNGKELDGRNITVNQA 84
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T ++++ YF +FGD+++ + D TG+S+G+GFV F++ ES + D
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 77 PNPVIDGR 84
++G+
Sbjct: 156 KEHKLNGK 163
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+ +TP E++R YF FG++ + D T K +G+ F+TF++ E ++ +
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240
Query: 77 P 77
Sbjct: 241 K 241
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
+ FVGGL W T + ++ F ++GD++++ II+D+ TG+S+G+GFVTF E+ R+A +
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 77 PN-PVIDGRRANCNIA 91
N +DGR N A
Sbjct: 67 MNGQDLDGRNITVNEA 82
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 46/69 (66%)
Query: 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACD 75
+K+F+GGL+W+T +++ Y +FG++L+ I +D TG+S+G+GFV F+D S + +
Sbjct: 34 SKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLE 93
Query: 76 NPNPVIDGR 84
+DG+
Sbjct: 94 TKEHKLDGK 102
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
KVFVGGL+ ET E++++YF FG+I + D T + +G+ FVT+ D E ++ ++
Sbjct: 120 KVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLLES 179
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Query: 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESAR 71
D+ K+FVGG++WET +++R +F +G++ +A+++ DK TG+ +G+GFV F DP
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLD 61
Query: 72 RACDNPNPV----IDGRRA 86
R + + +D +RA
Sbjct: 62 RVLQEKHSIDTREVDVKRA 80
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 7 RSQFGD--TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTF 64
RS GD K+FVGGL EE R+YFE +G + + I+ D+ T + +G+GFV+F
Sbjct: 99 RSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSF 158
Query: 65 RDPESA 70
D E A
Sbjct: 159 -DSEDA 163
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 47/72 (65%)
Query: 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARR 72
T+ K+F+GGL+W+T +++ Y +FG++++ I +D TG+S+G+GFV F+D S +
Sbjct: 48 TSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 107
Query: 73 ACDNPNPVIDGR 84
+ +DG+
Sbjct: 108 VLELKEHKLDGK 119
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
KVFVGGL+ +T E+++ YF FG+I + D T + +G+ F+T+ D E ++ ++
Sbjct: 137 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 196
Query: 77 PNPVIDGRRANCNIA 91
I + +A
Sbjct: 197 RYHQIGSGKCEIKVA 211
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T ++++ YF +FG++++ + D TG+S+G+GFV F++ ES + D
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 77 PNPVIDGR 84
++G+
Sbjct: 158 KEHKLNGK 165
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+ +TP E++R YF FG++ + D T K +G+ F+TF++ E ++ +
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 77 P 77
Sbjct: 243 K 243
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 47/68 (69%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T ++++ YF +FG++++ + D TG+S+G+GFV F++ ES + D
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 77 PNPVIDGR 84
++G+
Sbjct: 158 KEHKLNGK 165
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL+ +TP E++R YF FG++ + D T K +G+ F+TF++ E ++ +
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 77 P 77
Sbjct: 243 K 243
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+FVGGL +ET E + + F ++G + E V++ D+ + +S+G+GFVTF +PE A+ A
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 77 PN-PVIDGRRANCNIA 91
N +DGR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 45/68 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T +++ Y +FG++++ I +D TG+S+G+GFV F+D S + +
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 77 PNPVIDGR 84
+DG+
Sbjct: 209 KEHKLDGK 216
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
KVFVGGL+ +T E+++ YF FG+I + D T + +G+ F+T+ D E ++ ++
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
Query: 77 PNPVIDGRRANCNIA 91
I + +A
Sbjct: 294 RYHQIGSGKCEIKVA 308
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus
laevis GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 45/68 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T +++ Y +FG++L+ I +D TG+S+G+GFV F+D S + +
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 86
Query: 77 PNPVIDGR 84
+DG+
Sbjct: 87 NEHKLDGK 94
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACD 75
KVFVGGL+ ET E++++YF FG+I + D T + +G+ FVT+ E ++ +
Sbjct: 112 KVFVGGLSPETTEEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLLE 170
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 45/68 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T +++ Y +FG++++ I +D TG+S+G+GFV F+D S + +
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 86
Query: 77 PNPVIDGR 84
+DG+
Sbjct: 87 KEHKLDGK 94
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
KVFVGGL+ ET E++++YF FG+I + D T + +G+ FVT+ E ++ ++
Sbjct: 112 KVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKKLLES 171
Query: 77 PNPVIDGRRANCNIA 91
I + +A
Sbjct: 172 RFHQIGTGKCEIKVA 186
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 45/68 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T +++ Y +FG++++ I +D TG+S+G+GFV F+D S + +
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 77 PNPVIDGR 84
+DG+
Sbjct: 91 KEHKLDGK 98
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
KVFVGGL+ +T E+++ YF FG+I + D T + +G+ F+T+ D E ++ ++
Sbjct: 116 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 175
Query: 77 PNPVIDGRRANCNIA 91
I + +A
Sbjct: 176 RYHQIGSGKCEIKVA 190
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL ++T E + + F ++G I E V++ D+ T +S+G+GFVTF +P+ A+ A
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 77 PN-PVIDGRRANCNIA 91
N +DGR+ + A
Sbjct: 66 MNGKAVDGRQIRVDQA 81
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 45/68 (66%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76
K+F+GGL+W+T +++ Y +FG++++ I +D TG+S+G+GFV F+D S + +
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 77 PNPVIDGR 84
+DG+
Sbjct: 90 KEHKLDGK 97
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACD 75
KVFVGGL+ +T E+++ YF FG+I + D T + +G+ F+T+ D E ++ +
Sbjct: 115 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 173
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.135 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,142,849
Number of Sequences: 539616
Number of extensions: 6891228
Number of successful extensions: 44179
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 1385
Number of HSP's that attempted gapping in prelim test: 31066
Number of HSP's gapped (non-prelim): 8270
length of query: 259
length of database: 191,569,459
effective HSP length: 115
effective length of query: 144
effective length of database: 129,513,619
effective search space: 18649961136
effective search space used: 18649961136
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)