Query 039503
Match_columns 259
No_of_seqs 343 out of 1980
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 10:20:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0149 Predicted RNA-binding 99.9 2.4E-23 5.2E-28 177.3 13.3 94 6-99 3-97 (247)
2 PLN03134 glycine-rich RNA-bind 99.9 2.6E-21 5.5E-26 157.5 14.5 84 13-96 32-116 (144)
3 TIGR01659 sex-lethal sex-letha 99.8 9E-19 1.9E-23 161.4 14.9 85 12-96 190-277 (346)
4 TIGR01659 sex-lethal sex-letha 99.7 1.6E-17 3.5E-22 153.1 11.2 84 10-93 102-186 (346)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 5.1E-17 1.1E-21 149.2 12.4 82 14-95 268-350 (352)
6 TIGR01628 PABP-1234 polyadenyl 99.7 1.9E-16 4.1E-21 154.6 16.5 85 12-97 282-367 (562)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 7.5E-17 1.6E-21 148.1 10.7 81 15-95 3-84 (352)
8 KOG0113 U1 small nuclear ribon 99.7 1.3E-16 2.9E-21 140.1 11.7 95 1-95 87-182 (335)
9 KOG0148 Apoptosis-promoting RN 99.7 8E-16 1.7E-20 133.8 13.1 85 11-101 160-245 (321)
10 KOG0125 Ataxin 2-binding prote 99.7 1.7E-16 3.6E-21 141.1 8.7 82 11-94 92-174 (376)
11 KOG4207 Predicted splicing fac 99.7 3E-16 6.4E-21 131.8 9.5 83 14-96 12-95 (256)
12 KOG0121 Nuclear cap-binding pr 99.7 2.2E-16 4.7E-21 123.5 7.5 82 14-95 35-117 (153)
13 KOG0117 Heterogeneous nuclear 99.7 1.8E-15 3.8E-20 139.2 14.6 79 13-99 257-336 (506)
14 KOG0122 Translation initiation 99.7 5.1E-16 1.1E-20 133.3 10.2 81 14-94 188-269 (270)
15 PF00076 RRM_1: RNA recognitio 99.7 3.1E-16 6.8E-21 110.3 7.4 69 18-87 1-70 (70)
16 KOG0107 Alternative splicing f 99.6 1.2E-15 2.6E-20 125.2 10.7 76 14-94 9-85 (195)
17 KOG0144 RNA-binding protein CU 99.6 1.6E-15 3.5E-20 138.9 8.1 96 2-97 21-120 (510)
18 KOG0105 Alternative splicing f 99.6 5.7E-15 1.2E-19 122.3 10.4 80 13-95 4-84 (241)
19 TIGR01645 half-pint poly-U bin 99.6 3.5E-15 7.5E-20 145.4 10.7 81 14-94 203-284 (612)
20 TIGR01645 half-pint poly-U bin 99.6 3.2E-15 6.9E-20 145.6 10.0 80 13-92 105-185 (612)
21 TIGR01648 hnRNP-R-Q heterogene 99.6 1.1E-14 2.4E-19 141.4 13.7 74 14-95 232-308 (578)
22 PLN03120 nucleic acid binding 99.6 8.8E-15 1.9E-19 128.4 10.8 77 14-94 3-80 (260)
23 PF14259 RRM_6: RNA recognitio 99.6 5.7E-15 1.2E-19 104.7 7.2 69 18-87 1-70 (70)
24 TIGR01628 PABP-1234 polyadenyl 99.6 9.5E-15 2.1E-19 142.6 10.6 77 17-93 2-79 (562)
25 KOG0111 Cyclophilin-type pepti 99.6 3E-15 6.5E-20 126.9 5.4 87 10-96 5-92 (298)
26 KOG0148 Apoptosis-promoting RN 99.6 9.7E-15 2.1E-19 127.0 8.4 81 15-95 62-143 (321)
27 TIGR01642 U2AF_lg U2 snRNP aux 99.5 4.1E-14 8.8E-19 136.2 12.2 82 14-95 294-376 (509)
28 TIGR01648 hnRNP-R-Q heterogene 99.5 2.5E-14 5.5E-19 139.0 10.5 76 13-89 56-133 (578)
29 KOG0144 RNA-binding protein CU 99.5 5.5E-15 1.2E-19 135.5 5.1 87 14-101 123-213 (510)
30 TIGR01622 SF-CC1 splicing fact 99.5 4E-14 8.7E-19 134.6 10.8 79 15-93 186-265 (457)
31 KOG0108 mRNA cleavage and poly 99.5 2.6E-14 5.5E-19 134.4 8.9 96 1-96 1-100 (435)
32 smart00362 RRM_2 RNA recogniti 99.5 7.8E-14 1.7E-18 96.9 8.8 71 17-89 1-72 (72)
33 TIGR01622 SF-CC1 splicing fact 99.5 5.6E-14 1.2E-18 133.6 10.6 83 12-94 86-168 (457)
34 PLN03213 repressor of silencin 99.5 4.5E-14 9.7E-19 131.5 9.5 78 12-93 7-87 (759)
35 KOG0126 Predicted RNA-binding 99.5 3.3E-15 7.1E-20 123.3 1.5 80 14-93 34-114 (219)
36 smart00360 RRM RNA recognition 99.5 1.1E-13 2.5E-18 95.6 8.6 70 20-89 1-71 (71)
37 COG0724 RNA-binding proteins ( 99.5 1E-13 2.2E-18 119.4 9.9 78 15-92 115-193 (306)
38 PLN03121 nucleic acid binding 99.5 2.2E-13 4.8E-18 118.0 10.6 76 14-92 4-79 (243)
39 KOG0117 Heterogeneous nuclear 99.5 1.3E-13 2.7E-18 127.1 8.8 79 13-91 81-161 (506)
40 KOG0145 RNA-binding protein EL 99.5 2E-13 4.3E-18 118.5 8.2 85 12-96 38-123 (360)
41 KOG0130 RNA-binding protein RB 99.4 2.4E-13 5.1E-18 107.4 7.4 82 15-96 72-154 (170)
42 cd00590 RRM RRM (RNA recogniti 99.4 9.9E-13 2.1E-17 91.7 9.3 73 17-90 1-74 (74)
43 KOG0109 RNA-binding protein LA 99.4 1.6E-13 3.6E-18 120.5 6.0 72 15-94 2-74 (346)
44 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 1E-12 2.2E-17 126.4 11.1 78 13-95 273-352 (481)
45 KOG0131 Splicing factor 3b, su 99.4 2.1E-13 4.7E-18 112.6 5.3 80 13-92 7-87 (203)
46 KOG4205 RNA-binding protein mu 99.4 3.9E-13 8.5E-18 121.6 6.5 83 14-96 5-87 (311)
47 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 1.9E-12 4E-17 124.6 10.4 74 15-94 2-78 (481)
48 KOG0114 Predicted RNA-binding 99.4 5.6E-12 1.2E-16 95.5 9.2 80 10-92 13-93 (124)
49 KOG0116 RasGAP SH3 binding pro 99.3 6.3E-12 1.4E-16 117.8 11.3 83 15-97 288-370 (419)
50 KOG0146 RNA-binding protein ET 99.3 1E-12 2.3E-17 114.4 5.4 85 11-95 281-366 (371)
51 smart00361 RRM_1 RNA recogniti 99.3 7.9E-12 1.7E-16 89.2 7.4 61 29-89 2-70 (70)
52 KOG4212 RNA-binding protein hn 99.3 1.1E-11 2.5E-16 114.1 10.3 78 15-93 44-123 (608)
53 KOG0127 Nucleolar protein fibr 99.3 5.3E-12 1.1E-16 118.9 8.2 79 15-94 117-196 (678)
54 KOG0145 RNA-binding protein EL 99.3 9.8E-12 2.1E-16 108.0 9.1 80 14-93 277-357 (360)
55 KOG0127 Nucleolar protein fibr 99.3 8.6E-12 1.9E-16 117.5 9.0 82 13-94 290-378 (678)
56 KOG0415 Predicted peptidyl pro 99.3 3.5E-12 7.5E-17 114.8 6.1 80 14-93 238-318 (479)
57 KOG0124 Polypyrimidine tract-b 99.3 2.9E-12 6.2E-17 115.8 4.0 77 14-90 112-189 (544)
58 KOG0153 Predicted RNA-binding 99.3 1.3E-11 2.8E-16 110.9 7.8 78 10-93 223-302 (377)
59 KOG4205 RNA-binding protein mu 99.3 4.2E-11 9E-16 108.5 10.8 84 14-97 96-179 (311)
60 KOG0131 Splicing factor 3b, su 99.2 1.1E-11 2.5E-16 102.5 6.4 80 16-95 97-178 (203)
61 PF13893 RRM_5: RNA recognitio 99.2 1.9E-11 4E-16 83.2 6.4 55 32-91 1-56 (56)
62 KOG0146 RNA-binding protein ET 99.2 1.1E-11 2.3E-16 108.2 6.3 88 10-98 14-105 (371)
63 KOG4849 mRNA cleavage factor I 99.2 8.6E-10 1.9E-14 99.4 17.4 74 14-87 79-155 (498)
64 KOG0147 Transcriptional coacti 99.2 1.1E-11 2.4E-16 116.9 5.6 79 15-93 278-357 (549)
65 KOG0123 Polyadenylate-binding 99.2 5.5E-11 1.2E-15 110.6 8.8 79 18-99 79-158 (369)
66 KOG0132 RNA polymerase II C-te 99.2 5E-11 1.1E-15 116.1 8.3 81 11-97 417-498 (894)
67 KOG0109 RNA-binding protein LA 99.1 6.7E-11 1.4E-15 104.2 6.6 77 11-95 74-151 (346)
68 KOG4206 Spliceosomal protein s 99.1 1.7E-10 3.6E-15 98.6 8.2 81 14-97 8-93 (221)
69 KOG4208 Nucleolar RNA-binding 99.1 2.4E-10 5.2E-15 96.4 8.1 84 11-94 45-130 (214)
70 TIGR01642 U2AF_lg U2 snRNP aux 99.1 2.7E-10 5.8E-15 109.8 9.1 75 11-92 171-258 (509)
71 KOG0124 Polypyrimidine tract-b 99.1 1.9E-10 4.2E-15 104.1 7.4 80 14-93 209-289 (544)
72 KOG4661 Hsp27-ERE-TATA-binding 99.1 3E-10 6.5E-15 107.7 7.4 82 12-93 402-484 (940)
73 KOG0226 RNA-binding proteins [ 99.0 1.9E-10 4E-15 99.7 4.3 86 10-95 185-271 (290)
74 KOG4212 RNA-binding protein hn 99.0 1E-09 2.2E-14 101.4 6.5 74 13-91 534-608 (608)
75 KOG0110 RNA-binding protein (R 99.0 5.2E-10 1.1E-14 108.4 4.7 84 11-94 609-693 (725)
76 KOG0110 RNA-binding protein (R 99.0 1.6E-09 3.6E-14 105.0 7.8 79 14-92 514-596 (725)
77 KOG0533 RRM motif-containing p 98.9 4.3E-09 9.3E-14 92.2 8.3 83 11-94 79-162 (243)
78 KOG4209 Splicing factor RNPS1, 98.9 3.1E-09 6.8E-14 92.8 7.0 85 9-94 95-180 (231)
79 KOG0123 Polyadenylate-binding 98.9 5E-09 1.1E-13 97.6 8.2 73 16-94 2-75 (369)
80 KOG0106 Alternative splicing f 98.8 3.5E-09 7.6E-14 90.9 5.4 71 16-94 2-73 (216)
81 KOG1548 Transcription elongati 98.8 3.4E-08 7.4E-13 89.0 9.0 85 9-94 128-221 (382)
82 KOG1457 RNA binding protein (c 98.8 6.1E-08 1.3E-12 83.0 10.0 86 13-98 32-122 (284)
83 KOG4211 Splicing factor hnRNP- 98.7 5.7E-08 1.2E-12 91.1 8.2 77 13-92 8-84 (510)
84 KOG4660 Protein Mei2, essentia 98.6 1.6E-08 3.5E-13 95.9 3.6 73 10-87 70-143 (549)
85 KOG1995 Conserved Zn-finger pr 98.6 2.4E-07 5.2E-12 84.1 8.5 85 11-95 62-155 (351)
86 KOG4454 RNA binding protein (R 98.6 2.6E-08 5.6E-13 84.9 2.1 77 13-91 7-84 (267)
87 PF04059 RRM_2: RNA recognitio 98.5 1.1E-06 2.4E-11 66.7 8.6 78 16-93 2-86 (97)
88 KOG0151 Predicted splicing reg 98.4 2.6E-07 5.6E-12 90.0 5.8 83 11-93 170-256 (877)
89 KOG0120 Splicing factor U2AF, 98.3 1E-06 2.2E-11 84.2 6.4 90 10-99 284-374 (500)
90 KOG4211 Splicing factor hnRNP- 98.3 1.6E-06 3.5E-11 81.5 7.5 79 13-92 101-180 (510)
91 PF11608 Limkain-b1: Limkain b 98.3 2.9E-06 6.3E-11 62.2 6.7 70 16-95 3-78 (90)
92 KOG4210 Nuclear localization s 98.3 1.2E-06 2.5E-11 79.1 5.5 81 14-95 183-265 (285)
93 KOG1190 Polypyrimidine tract-b 98.1 1.5E-05 3.2E-10 73.7 9.1 75 15-94 297-373 (492)
94 KOG0106 Alternative splicing f 98.1 2.9E-06 6.2E-11 73.1 3.8 75 11-93 95-170 (216)
95 KOG0147 Transcriptional coacti 98.0 2.6E-06 5.6E-11 81.1 2.6 87 11-97 175-261 (549)
96 PF08777 RRM_3: RNA binding mo 98.0 1.1E-05 2.4E-10 62.2 4.6 69 16-90 2-76 (105)
97 KOG1457 RNA binding protein (c 97.9 8.6E-06 1.9E-10 69.9 3.6 64 12-79 207-270 (284)
98 PF14605 Nup35_RRM_2: Nup53/35 97.8 5.3E-05 1.1E-09 51.1 5.8 52 16-74 2-53 (53)
99 KOG1855 Predicted RNA-binding 97.8 2.6E-05 5.7E-10 72.5 5.2 70 11-80 227-309 (484)
100 KOG1190 Polypyrimidine tract-b 97.7 2.2E-05 4.7E-10 72.6 3.3 73 14-92 27-102 (492)
101 KOG4307 RNA binding protein RB 97.7 9.4E-05 2E-09 72.4 7.7 80 11-90 863-943 (944)
102 KOG0129 Predicted RNA-binding 97.7 0.00012 2.6E-09 69.5 7.6 67 11-78 255-327 (520)
103 KOG4206 Spliceosomal protein s 97.6 0.00031 6.7E-09 60.4 8.5 76 12-92 143-220 (221)
104 KOG2314 Translation initiation 97.6 0.00027 5.8E-09 67.9 8.6 80 11-91 54-141 (698)
105 COG5175 MOT2 Transcriptional r 97.5 0.00021 4.5E-09 64.9 6.2 80 14-93 113-202 (480)
106 KOG0129 Predicted RNA-binding 97.5 0.00041 8.9E-09 66.0 7.9 64 14-77 369-433 (520)
107 PF10309 DUF2414: Protein of u 97.4 0.0008 1.7E-08 46.8 7.2 57 13-77 3-62 (62)
108 KOG0105 Alternative splicing f 97.4 0.002 4.4E-08 54.1 9.9 71 15-92 115-188 (241)
109 KOG1456 Heterogeneous nuclear 97.3 0.0012 2.6E-08 60.8 9.1 78 11-93 283-362 (494)
110 KOG1548 Transcription elongati 97.3 0.00099 2.2E-08 60.7 8.5 76 13-92 263-350 (382)
111 KOG1456 Heterogeneous nuclear 97.2 0.015 3.2E-07 53.8 14.1 77 15-96 120-201 (494)
112 KOG3152 TBP-binding protein, a 97.2 0.00034 7.3E-09 61.3 3.3 72 14-85 73-157 (278)
113 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0031 6.7E-08 48.2 6.6 78 14-92 5-90 (100)
114 KOG0120 Splicing factor U2AF, 97.0 0.0021 4.6E-08 61.8 7.0 61 32-92 426-490 (500)
115 KOG1365 RNA-binding protein Fu 96.9 0.0012 2.5E-08 61.0 4.4 78 15-93 280-361 (508)
116 KOG0128 RNA-binding protein SA 96.8 0.00059 1.3E-08 68.3 2.2 78 15-93 736-814 (881)
117 KOG2202 U2 snRNP splicing fact 96.8 0.00049 1.1E-08 60.3 1.3 60 31-91 84-145 (260)
118 PF15023 DUF4523: Protein of u 96.8 0.0071 1.5E-07 48.9 7.6 80 6-92 77-160 (166)
119 PF08952 DUF1866: Domain of un 96.7 0.0046 1E-07 50.2 6.4 56 31-94 52-107 (146)
120 KOG2193 IGF-II mRNA-binding pr 96.7 0.00088 1.9E-08 62.5 2.4 77 16-99 2-81 (584)
121 KOG4676 Splicing factor, argin 96.7 0.0022 4.8E-08 59.3 4.5 76 14-89 6-84 (479)
122 KOG1365 RNA-binding protein Fu 96.6 0.0011 2.4E-08 61.1 2.4 73 16-89 162-238 (508)
123 KOG2591 c-Mpl binding protein, 96.6 0.0029 6.2E-08 60.9 5.1 76 10-92 170-250 (684)
124 KOG1996 mRNA splicing factor [ 96.4 0.01 2.2E-07 53.2 6.9 61 29-89 300-362 (378)
125 KOG0128 RNA-binding protein SA 96.4 0.00015 3.3E-09 72.4 -5.2 70 14-83 666-735 (881)
126 KOG0115 RNA-binding protein p5 96.4 0.0036 7.9E-08 55.0 3.8 62 16-78 32-93 (275)
127 KOG4307 RNA binding protein RB 96.3 0.0041 8.9E-08 61.3 4.4 79 10-89 429-509 (944)
128 KOG2416 Acinus (induces apopto 96.2 0.003 6.5E-08 61.2 2.4 76 12-93 441-521 (718)
129 KOG0112 Large RNA-binding prot 96.1 0.0062 1.3E-07 61.6 4.4 78 11-94 451-531 (975)
130 PF08675 RNA_bind: RNA binding 96.0 0.015 3.3E-07 42.8 4.8 55 15-78 9-63 (87)
131 KOG0112 Large RNA-binding prot 95.4 0.0039 8.5E-08 62.9 -0.3 80 11-91 368-448 (975)
132 KOG4660 Protein Mei2, essentia 95.1 0.032 6.9E-07 53.8 4.8 80 14-93 387-472 (549)
133 KOG2135 Proteins containing th 94.9 0.017 3.7E-07 54.8 2.4 76 13-94 370-446 (526)
134 PF03880 DbpA: DbpA RNA bindin 94.8 0.11 2.3E-06 37.2 6.1 66 17-91 2-74 (74)
135 KOG4210 Nuclear localization s 94.8 0.018 3.8E-07 52.1 2.2 81 14-94 87-168 (285)
136 KOG2068 MOT2 transcription fac 94.7 0.014 3E-07 53.2 1.4 79 14-92 76-161 (327)
137 KOG2253 U1 snRNP complex, subu 94.5 0.017 3.7E-07 56.7 1.5 69 14-91 39-108 (668)
138 PF04847 Calcipressin: Calcipr 94.1 0.16 3.5E-06 43.0 6.4 60 28-93 8-70 (184)
139 PF07576 BRAP2: BRCA1-associat 93.8 0.96 2.1E-05 35.1 9.7 63 16-80 14-77 (110)
140 KOG4285 Mitotic phosphoprotein 92.1 0.78 1.7E-05 41.5 7.9 68 18-92 200-268 (350)
141 PF03467 Smg4_UPF3: Smg-4/UPF3 92.1 0.15 3.3E-06 42.8 3.3 82 13-94 5-98 (176)
142 KOG4574 RNA-binding protein (c 91.3 0.13 2.8E-06 52.1 2.4 72 17-94 300-374 (1007)
143 KOG4410 5-formyltetrahydrofola 90.0 0.82 1.8E-05 41.1 5.9 58 15-78 330-395 (396)
144 PF07530 PRE_C2HC: Associated 88.3 1.4 3E-05 31.1 5.1 60 30-92 2-63 (68)
145 smart00596 PRE_C2HC PRE_C2HC d 88.2 1 2.2E-05 31.9 4.3 60 30-92 2-63 (69)
146 PF11767 SET_assoc: Histone ly 87.1 2.8 6.1E-05 29.4 6.0 54 26-88 11-65 (66)
147 KOG4483 Uncharacterized conser 86.9 1.9 4.2E-05 40.5 6.4 61 14-81 390-451 (528)
148 KOG0804 Cytoplasmic Zn-finger 81.9 5.6 0.00012 38.0 7.2 63 15-79 74-137 (493)
149 PRK11634 ATP-dependent RNA hel 81.7 15 0.00032 37.0 10.7 71 15-94 486-563 (629)
150 KOG4454 RNA binding protein (R 79.1 0.41 8.9E-06 41.5 -1.1 68 10-78 75-146 (267)
151 KOG2318 Uncharacterized conser 78.3 8.4 0.00018 38.0 7.3 80 12-91 171-305 (650)
152 KOG2891 Surface glycoprotein [ 77.6 2.1 4.5E-05 38.5 2.9 35 14-48 148-194 (445)
153 KOG4676 Splicing factor, argin 77.1 0.35 7.5E-06 45.2 -2.2 64 15-82 151-214 (479)
154 PF10567 Nab6_mRNP_bdg: RNA-re 76.3 4.8 0.0001 36.4 4.8 82 12-93 12-107 (309)
155 KOG4019 Calcineurin-mediated s 76.1 2.5 5.4E-05 35.7 2.7 76 13-94 8-90 (193)
156 PRK14548 50S ribosomal protein 75.0 12 0.00025 27.6 5.8 57 18-77 23-81 (84)
157 PF03468 XS: XS domain; Inter 72.6 7 0.00015 30.5 4.4 45 27-74 29-74 (116)
158 COG0724 RNA-binding proteins ( 67.1 9.7 0.00021 31.9 4.6 65 10-74 220-284 (306)
159 KOG2295 C2H2 Zn-finger protein 66.2 1.1 2.3E-05 43.8 -1.7 65 14-78 230-294 (648)
160 KOG2193 IGF-II mRNA-binding pr 60.4 0.99 2.1E-05 42.7 -3.0 76 14-93 79-156 (584)
161 PF08206 OB_RNB: Ribonuclease 59.6 1.3 2.8E-05 30.0 -1.8 37 56-92 7-44 (58)
162 PF15513 DUF4651: Domain of un 58.4 20 0.00044 24.8 3.9 19 30-48 9-27 (62)
163 KOG4365 Uncharacterized conser 56.5 1.9 4E-05 41.1 -1.9 78 15-93 3-81 (572)
164 PF00403 HMA: Heavy-metal-asso 54.7 46 0.001 22.0 5.4 55 17-77 1-59 (62)
165 PF07292 NID: Nmi/IFP 35 domai 51.8 18 0.0004 26.8 3.1 32 60-91 1-34 (88)
166 PF11411 DNA_ligase_IV: DNA li 44.7 17 0.00036 22.4 1.6 17 25-41 19-35 (36)
167 COG5193 LHP1 La protein, small 42.9 11 0.00024 35.6 0.9 62 14-75 173-244 (438)
168 PF09707 Cas_Cas2CT1978: CRISP 42.6 55 0.0012 24.2 4.4 48 15-65 25-72 (86)
169 cd06405 PB1_Mekk2_3 The PB1 do 41.6 1.3E+02 0.0029 21.7 6.5 60 23-90 16-76 (79)
170 PF02714 DUF221: Domain of unk 41.2 29 0.00064 31.3 3.4 35 60-95 1-35 (325)
171 PF08734 GYD: GYD domain; Int 40.7 1.1E+02 0.0025 22.4 6.0 46 29-78 22-68 (91)
172 COG5353 Uncharacterized protei 40.3 1.3E+02 0.0029 24.6 6.6 55 16-70 88-155 (161)
173 PRK11901 hypothetical protein; 39.0 49 0.0011 30.5 4.4 61 15-80 245-307 (327)
174 PF13193 AMP-binding_C: AMP-bi 36.0 1.3E+02 0.0028 20.5 5.4 44 31-76 1-46 (73)
175 PRK11558 putative ssRNA endonu 35.0 65 0.0014 24.4 3.8 48 16-66 28-75 (97)
176 PF03439 Spt5-NGN: Early trans 35.0 54 0.0012 23.7 3.4 25 56-80 43-67 (84)
177 PF07292 NID: Nmi/IFP 35 domai 34.1 21 0.00045 26.6 1.0 25 12-36 49-73 (88)
178 TIGR03636 L23_arch archaeal ri 33.6 1.2E+02 0.0026 21.8 4.9 57 17-76 15-73 (77)
179 KOG3432 Vacuolar H+-ATPase V1 32.9 64 0.0014 25.0 3.5 25 24-48 42-66 (121)
180 PRK06737 acetolactate synthase 32.4 1.9E+02 0.0041 20.7 6.3 66 17-85 6-72 (76)
181 PRK10905 cell division protein 32.2 67 0.0014 29.6 4.1 63 14-81 246-310 (328)
182 CHL00123 rps6 ribosomal protei 32.2 2.1E+02 0.0045 21.3 6.3 58 17-76 10-81 (97)
183 TIGR01873 cas_CT1978 CRISPR-as 31.8 39 0.00085 25.0 2.2 49 15-66 25-74 (87)
184 PRK01178 rps24e 30S ribosomal 31.4 1.2E+02 0.0027 22.9 4.8 46 26-72 30-80 (99)
185 PF13046 DUF3906: Protein of u 31.2 50 0.0011 23.0 2.4 34 27-62 30-63 (64)
186 KOG3424 40S ribosomal protein 31.0 1.6E+02 0.0035 23.2 5.5 46 26-72 34-84 (132)
187 PF04026 SpoVG: SpoVG; InterP 29.8 1E+02 0.0022 22.6 4.0 26 41-66 2-27 (84)
188 PF02426 MIase: Muconolactone 29.5 2.4E+02 0.0052 21.0 6.8 53 22-78 10-72 (91)
189 PRK11152 ilvM acetolactate syn 29.3 2.2E+02 0.0047 20.4 5.8 68 17-88 7-75 (76)
190 PRK10629 EnvZ/OmpR regulon mod 29.3 2.6E+02 0.0056 22.1 6.6 69 16-92 36-109 (127)
191 PF14401 RLAN: RimK-like ATPgr 29.2 1.1E+02 0.0025 24.9 4.7 60 14-73 86-146 (153)
192 COG2608 CopZ Copper chaperone 29.0 1.6E+02 0.0035 20.4 4.9 57 15-77 3-63 (71)
193 KOG4008 rRNA processing protei 28.5 47 0.001 29.3 2.4 34 12-45 37-70 (261)
194 KOG4213 RNA-binding protein La 28.0 72 0.0016 27.0 3.3 51 27-78 118-171 (205)
195 PF14893 PNMA: PNMA 27.4 55 0.0012 30.3 2.8 51 15-67 18-72 (331)
196 TIGR01033 DNA-binding regulato 27.2 1.8E+02 0.0038 25.6 5.9 44 15-65 94-143 (238)
197 PF08544 GHMP_kinases_C: GHMP 27.1 1.3E+02 0.0028 20.9 4.2 42 30-77 37-79 (85)
198 PRK08559 nusG transcription an 26.5 1.5E+02 0.0032 24.0 4.9 33 42-79 36-68 (153)
199 cd04880 ACT_AAAH-PDT-like ACT 26.4 1.9E+02 0.0041 19.7 5.0 50 28-78 12-65 (75)
200 PF14084 DUF4264: Protein of u 26.3 80 0.0017 21.1 2.7 37 59-95 5-41 (52)
201 KOG0156 Cytochrome P450 CYP2 s 26.2 1.4E+02 0.003 29.1 5.5 60 18-86 35-97 (489)
202 COG4010 Uncharacterized protei 25.0 1.4E+02 0.003 24.4 4.3 46 22-77 118-163 (170)
203 PF00276 Ribosomal_L23: Riboso 24.5 86 0.0019 23.2 2.9 31 18-48 22-54 (91)
204 COG5470 Uncharacterized conser 24.5 1.8E+02 0.0039 21.9 4.6 43 32-76 25-72 (96)
205 PF10281 Ish1: Putative stress 24.1 76 0.0016 19.3 2.2 18 26-43 3-20 (38)
206 PRK13259 regulatory protein Sp 23.9 1.3E+02 0.0028 22.6 3.8 26 41-66 2-27 (94)
207 COG3254 Uncharacterized conser 23.9 2.8E+02 0.0061 21.3 5.6 44 31-77 28-71 (105)
208 PF14026 DUF4242: Protein of u 23.6 2.8E+02 0.006 19.7 8.4 58 18-77 3-67 (77)
209 PF12687 DUF3801: Protein of u 23.4 1.7E+02 0.0037 25.0 5.0 51 26-78 38-91 (204)
210 PF01071 GARS_A: Phosphoribosy 22.8 1.3E+02 0.0028 25.6 4.1 47 27-77 24-70 (194)
211 PTZ00071 40S ribosomal protein 22.6 1.8E+02 0.004 23.2 4.6 45 26-71 35-85 (132)
212 PHA01632 hypothetical protein 22.6 93 0.002 21.1 2.4 20 19-38 20-39 (64)
213 PF14111 DUF4283: Domain of un 22.0 53 0.0012 25.8 1.5 68 17-89 17-87 (153)
214 cd04904 ACT_AAAH ACT domain of 21.9 2.4E+02 0.0053 19.5 4.8 49 29-79 14-65 (74)
215 cd04889 ACT_PDH-BS-like C-term 21.7 2.3E+02 0.0049 18.0 6.3 43 30-75 13-56 (56)
216 PRK13562 acetolactate synthase 21.5 3.4E+02 0.0073 20.0 6.5 67 17-86 6-74 (84)
217 PRK12378 hypothetical protein; 21.4 2.2E+02 0.0048 25.0 5.3 37 15-51 91-133 (235)
218 PRK00110 hypothetical protein; 21.4 2.6E+02 0.0056 24.7 5.8 54 15-75 94-156 (245)
219 PF05189 RTC_insert: RNA 3'-te 21.3 1.3E+02 0.0029 22.4 3.5 48 17-64 12-64 (103)
220 KOG0226 RNA-binding proteins [ 21.1 35 0.00075 30.5 0.2 74 14-88 95-172 (290)
221 PF05929 Phage_GPO: Phage caps 20.8 1.7E+02 0.0037 26.4 4.6 17 35-51 52-68 (276)
222 PRK11230 glycolate oxidase sub 20.6 2E+02 0.0044 28.0 5.4 48 29-77 203-254 (499)
223 COG4874 Uncharacterized protei 20.6 1.3E+02 0.0027 26.9 3.5 56 13-70 156-223 (318)
224 PF15407 Spo7_2_N: Sporulation 20.4 34 0.00074 24.0 0.0 26 13-38 25-50 (67)
225 COG0002 ArgC Acetylglutamate s 20.1 1.3E+02 0.0028 28.1 3.7 44 23-66 253-302 (349)
226 cd04908 ACT_Bt0572_1 N-termina 20.1 2.8E+02 0.006 18.4 7.9 46 28-77 14-60 (66)
No 1
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.90 E-value=2.4e-23 Score=177.35 Aligned_cols=94 Identities=74% Similarity=1.337 Sum_probs=88.1
Q ss_pred CCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCce
Q 039503 6 YRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRR 85 (259)
Q Consensus 6 ~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~ 85 (259)
.+..+.|++.+|||||+|+|++.+|+|+++|++||+|++++||.|+.||++|||+||+|+|.++|++||+..|.+|+||+
T Consensus 3 ~~~~~~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~ 82 (247)
T KOG0149|consen 3 HNNPFGDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRK 82 (247)
T ss_pred CCCCCCCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccc-CCCCCC
Q 039503 86 ANCNIASL-GRPRPS 99 (259)
Q Consensus 86 l~V~~a~~-~~~~~~ 99 (259)
.+|++|.. .+.|..
T Consensus 83 aNcnlA~lg~~pR~~ 97 (247)
T KOG0149|consen 83 ANCNLASLGGKPRPV 97 (247)
T ss_pred cccchhhhcCccCCC
Confidence 99999998 444443
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.87 E-value=2.6e-21 Score=157.55 Aligned_cols=84 Identities=37% Similarity=0.693 Sum_probs=78.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEc
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIA 91 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a 91 (259)
...++|||+||+++++|++|+++|++||.|++|+|+.|+.|++++|||||+|++.++|++||+.+|. +|+|++|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 3577999999999999999999999999999999999999999999999999999999999999984 699999999999
Q ss_pred ccCCC
Q 039503 92 SLGRP 96 (259)
Q Consensus 92 ~~~~~ 96 (259)
+.+..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 75433
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.80 E-value=9e-19 Score=161.37 Aligned_cols=85 Identities=26% Similarity=0.427 Sum_probs=76.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-CCC--ceEEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-IDG--RRANC 88 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i~G--~~l~V 88 (259)
+...++|||+||+++++|++|+++|++||+|++|+|++|+.++++|+||||+|+++++|++||+.||.. |.+ ++|+|
T Consensus 190 ~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V 269 (346)
T TIGR01659 190 SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTV 269 (346)
T ss_pred ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999999964 655 68999
Q ss_pred EEcccCCC
Q 039503 89 NIASLGRP 96 (259)
Q Consensus 89 ~~a~~~~~ 96 (259)
++++....
T Consensus 270 ~~a~~~~~ 277 (346)
T TIGR01659 270 RLAEEHGK 277 (346)
T ss_pred EECCcccc
Confidence 99876543
No 4
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.73 E-value=1.6e-17 Score=153.08 Aligned_cols=84 Identities=27% Similarity=0.365 Sum_probs=78.2
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V 88 (259)
..+...++|||+||+++++|++|+++|++||+|++|+|++|+.++++||||||+|.++++|++||+.|++ +|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 3455688999999999999999999999999999999999999999999999999999999999999995 599999999
Q ss_pred EEccc
Q 039503 89 NIASL 93 (259)
Q Consensus 89 ~~a~~ 93 (259)
++++.
T Consensus 182 ~~a~p 186 (346)
T TIGR01659 182 SYARP 186 (346)
T ss_pred ecccc
Confidence 98765
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.72 E-value=5.1e-17 Score=149.16 Aligned_cols=82 Identities=26% Similarity=0.338 Sum_probs=76.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEcc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIAS 92 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~ 92 (259)
...+|||+||+++++|++|+++|++||.|++|+|++|+.|+++||||||+|.+.++|.+||+.||+ .|+|++|+|.++.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 345799999999999999999999999999999999999999999999999999999999999996 4999999999987
Q ss_pred cCC
Q 039503 93 LGR 95 (259)
Q Consensus 93 ~~~ 95 (259)
.+.
T Consensus 348 ~~~ 350 (352)
T TIGR01661 348 NKA 350 (352)
T ss_pred CCC
Confidence 654
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.71 E-value=1.9e-16 Score=154.57 Aligned_cols=85 Identities=28% Similarity=0.515 Sum_probs=77.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNI 90 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~ 90 (259)
....++|||+||++++++++|+++|++||.|++|+|+.| .+++++|||||+|.+.++|++||+.+|+ .|+|++|.|.+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 445678999999999999999999999999999999999 5799999999999999999999999995 59999999999
Q ss_pred cccCCCC
Q 039503 91 ASLGRPR 97 (259)
Q Consensus 91 a~~~~~~ 97 (259)
|..+..+
T Consensus 361 a~~k~~~ 367 (562)
T TIGR01628 361 AQRKEQR 367 (562)
T ss_pred ccCcHHH
Confidence 9876544
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.70 E-value=7.5e-17 Score=148.08 Aligned_cols=81 Identities=31% Similarity=0.493 Sum_probs=76.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEccc
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIASL 93 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~~ 93 (259)
.++|||+||+.+++|++|+++|++||+|++|+|++|+.+|+++|||||+|.+.++|++||+.||+ .|.|++|+|++++.
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 67999999999999999999999999999999999999999999999999999999999999996 59999999999875
Q ss_pred CC
Q 039503 94 GR 95 (259)
Q Consensus 94 ~~ 95 (259)
..
T Consensus 83 ~~ 84 (352)
T TIGR01661 83 SS 84 (352)
T ss_pred cc
Confidence 43
No 8
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=1.3e-16 Score=140.14 Aligned_cols=95 Identities=28% Similarity=0.519 Sum_probs=87.5
Q ss_pred CCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-
Q 039503 1 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP- 79 (259)
Q Consensus 1 m~~~~~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~- 79 (259)
|+|+.......+...+||||+.|+.+++|.+|++.|++||.|+.|.|++|+.||+++|||||+|+++.+..+|.+..++
T Consensus 87 ~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~ 166 (335)
T KOG0113|consen 87 LWDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGI 166 (335)
T ss_pred hcCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCc
Confidence 5778888877778899999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCCceEEEEEcccCC
Q 039503 80 VIDGRRANCNIASLGR 95 (259)
Q Consensus 80 ~i~G~~l~V~~a~~~~ 95 (259)
+|+|++|.|.+.....
T Consensus 167 ~Idgrri~VDvERgRT 182 (335)
T KOG0113|consen 167 KIDGRRILVDVERGRT 182 (335)
T ss_pred eecCcEEEEEeccccc
Confidence 5999999999875443
No 9
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=8e-16 Score=133.75 Aligned_cols=85 Identities=31% Similarity=0.469 Sum_probs=76.0
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
...++|+||||||..-++|++|++.|+.||.|.+|+|.++ +||+||.|++.|+|.+||..+|. +|.|+.++|.
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 4457999999999999999999999999999999999987 78999999999999999999995 6999999999
Q ss_pred EcccCCCCCCCC
Q 039503 90 IASLGRPRPSPP 101 (259)
Q Consensus 90 ~a~~~~~~~~~~ 101 (259)
|-+.........
T Consensus 234 WGKe~~~~~~~~ 245 (321)
T KOG0148|consen 234 WGKEGDDGINNQ 245 (321)
T ss_pred ccccCCCCCCch
Confidence 988765544433
No 10
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.67 E-value=1.7e-16 Score=141.12 Aligned_cols=82 Identities=32% Similarity=0.577 Sum_probs=74.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
...+.++|+|.|||+...|-||+.+|++||.|++|+||.+. .-+|||+||+|++.++|++|-++||+ +|.||+|+|+
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 34467899999999999999999999999999999999874 55899999999999999999999996 5999999999
Q ss_pred EcccC
Q 039503 90 IASLG 94 (259)
Q Consensus 90 ~a~~~ 94 (259)
.|..+
T Consensus 170 ~ATar 174 (376)
T KOG0125|consen 170 NATAR 174 (376)
T ss_pred ccchh
Confidence 98754
No 11
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.67 E-value=3e-16 Score=131.81 Aligned_cols=83 Identities=35% Similarity=0.643 Sum_probs=79.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEcc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIAS 92 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~ 92 (259)
.++.|-|.||...++-++|+.+|++||.|-+|.|.+|+.|+.++|||||.|.+..+|++|++.|++ +|+|+.|.|.+|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 478899999999999999999999999999999999999999999999999999999999999995 6999999999999
Q ss_pred cCCC
Q 039503 93 LGRP 96 (259)
Q Consensus 93 ~~~~ 96 (259)
..+.
T Consensus 92 ygr~ 95 (256)
T KOG4207|consen 92 YGRP 95 (256)
T ss_pred cCCC
Confidence 8765
No 12
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=2.2e-16 Score=123.47 Aligned_cols=82 Identities=22% Similarity=0.307 Sum_probs=76.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-CCCceEEEEEcc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-IDGRRANCNIAS 92 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i~G~~l~V~~a~ 92 (259)
.+++||||||+..++||+|.++|+++|+|+.|.+-.|+.+....|||||+|.+.++|+.||+.++++ ++.+.|+|.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 5899999999999999999999999999999999999998999999999999999999999999965 999999999876
Q ss_pred cCC
Q 039503 93 LGR 95 (259)
Q Consensus 93 ~~~ 95 (259)
.-.
T Consensus 115 GF~ 117 (153)
T KOG0121|consen 115 GFV 117 (153)
T ss_pred cch
Confidence 443
No 13
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=1.8e-15 Score=139.20 Aligned_cols=79 Identities=24% Similarity=0.413 Sum_probs=71.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEc
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIA 91 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a 91 (259)
.+++.|||+||..+||||.|+++|++||.|++|+.++| ||||+|.++++|.+|++.+|+ +|+|..|+|.+|
T Consensus 257 s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 257 SKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred hheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 35789999999999999999999999999999988755 999999999999999999995 599999999999
Q ss_pred ccCCCCCC
Q 039503 92 SLGRPRPS 99 (259)
Q Consensus 92 ~~~~~~~~ 99 (259)
++...++.
T Consensus 329 KP~~k~k~ 336 (506)
T KOG0117|consen 329 KPVDKKKK 336 (506)
T ss_pred CChhhhcc
Confidence 98654443
No 14
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=5.1e-16 Score=133.25 Aligned_cols=81 Identities=28% Similarity=0.400 Sum_probs=77.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-CCCceEEEEEcc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-IDGRRANCNIAS 92 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i~G~~l~V~~a~ 92 (259)
+.++|-|.||+.+++|++|+++|.+||.|.+|.|.+|+.||.+||||||+|.++++|.+||+.||+. ++.-.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 6788999999999999999999999999999999999999999999999999999999999999976 889999999998
Q ss_pred cC
Q 039503 93 LG 94 (259)
Q Consensus 93 ~~ 94 (259)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 64
No 15
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.66 E-value=3.1e-16 Score=110.30 Aligned_cols=69 Identities=39% Similarity=0.732 Sum_probs=64.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEE
Q 039503 18 VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRAN 87 (259)
Q Consensus 18 lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~ 87 (259)
|||+||+.++++++|+++|++||.|..+++..+ .+++.+++|||+|.+.++|++|++.+++ .|+|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 5788999999999999999999999985 59999875
No 16
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=1.2e-15 Score=125.17 Aligned_cols=76 Identities=28% Similarity=0.473 Sum_probs=70.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEcc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIAS 92 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~ 92 (259)
..++||||||..++++.||+.+|.+||.|.+|+|-+++ .|||||+|++..+|++|+..|++ .|+|.+|.|++++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 37899999999999999999999999999999987653 79999999999999999999995 5999999999987
Q ss_pred cC
Q 039503 93 LG 94 (259)
Q Consensus 93 ~~ 94 (259)
-.
T Consensus 84 G~ 85 (195)
T KOG0107|consen 84 GR 85 (195)
T ss_pred CC
Confidence 54
No 17
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=1.6e-15 Score=138.90 Aligned_cols=96 Identities=27% Similarity=0.442 Sum_probs=83.2
Q ss_pred CCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC--
Q 039503 2 AYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-- 79 (259)
Q Consensus 2 ~~~~~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-- 79 (259)
+....+.+..|.+.-|||||-|+..++|+||+++|++||.|.+|.|++||.|+.++|||||+|.++++|.+|+..|+.
T Consensus 21 ~~~~~~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~k 100 (510)
T KOG0144|consen 21 NGSLDHTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQK 100 (510)
T ss_pred cCCCCCCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhccc
Confidence 334455566777888999999999999999999999999999999999999999999999999999999999999873
Q ss_pred CCCC--ceEEEEEcccCCCC
Q 039503 80 VIDG--RRANCNIASLGRPR 97 (259)
Q Consensus 80 ~i~G--~~l~V~~a~~~~~~ 97 (259)
+|-| +.|.|++|...+.|
T Consensus 101 tlpG~~~pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 101 TLPGMHHPVQVKYADGERER 120 (510)
T ss_pred ccCCCCcceeecccchhhhc
Confidence 4766 57788888765554
No 18
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=5.7e-15 Score=122.27 Aligned_cols=80 Identities=25% Similarity=0.425 Sum_probs=70.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-CCCceEEEEEc
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-IDGRRANCNIA 91 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i~G~~l~V~~a 91 (259)
...++|||+|||.+|.|.+|+++|.|||.|.+|.|... -....||||+|++..+|+.||..-++. ++|.+|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 34689999999999999999999999999999988532 223689999999999999999999975 99999999999
Q ss_pred ccCC
Q 039503 92 SLGR 95 (259)
Q Consensus 92 ~~~~ 95 (259)
...+
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 8765
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.60 E-value=3.5e-15 Score=145.39 Aligned_cols=81 Identities=20% Similarity=0.422 Sum_probs=76.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEcc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIAS 92 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~ 92 (259)
..++|||+||+.++++++|+++|++||.|++|+|++|+.++++||||||+|++.++|.+||+.||+ .|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 457999999999999999999999999999999999999999999999999999999999999996 5999999999887
Q ss_pred cC
Q 039503 93 LG 94 (259)
Q Consensus 93 ~~ 94 (259)
..
T Consensus 283 ~p 284 (612)
T TIGR01645 283 TP 284 (612)
T ss_pred CC
Confidence 53
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.60 E-value=3.2e-15 Score=145.64 Aligned_cols=80 Identities=33% Similarity=0.591 Sum_probs=75.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEc
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIA 91 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a 91 (259)
...++|||+||+++++|++|+++|++||.|++|+|++|+.|+++||||||+|.+.++|++||+.+|+ .|+|++|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 3578999999999999999999999999999999999999999999999999999999999999996 599999999865
Q ss_pred c
Q 039503 92 S 92 (259)
Q Consensus 92 ~ 92 (259)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 3
No 21
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.60 E-value=1.1e-14 Score=141.42 Aligned_cols=74 Identities=27% Similarity=0.432 Sum_probs=67.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhC--CCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEE
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQF--GDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNI 90 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~ 90 (259)
..++|||+||+++++|++|+++|++| |+|++|+++ ++||||+|++.++|++||+.||+ +|+|+.|+|++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999 999999876 45999999999999999999995 69999999999
Q ss_pred cccCC
Q 039503 91 ASLGR 95 (259)
Q Consensus 91 a~~~~ 95 (259)
++...
T Consensus 304 Akp~~ 308 (578)
T TIGR01648 304 AKPVD 308 (578)
T ss_pred ccCCC
Confidence 98643
No 22
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.59 E-value=8.8e-15 Score=128.38 Aligned_cols=77 Identities=21% Similarity=0.286 Sum_probs=69.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCceEEEEEcc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVIDGRRANCNIAS 92 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~~l~V~~a~ 92 (259)
..++|||+||+++++|++|+++|+.||+|++|+|++|+. .+|||||+|++.++|++||. |+ ..|.|+.|+|.++.
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 367999999999999999999999999999999998863 47999999999999999996 66 57999999999986
Q ss_pred cC
Q 039503 93 LG 94 (259)
Q Consensus 93 ~~ 94 (259)
.-
T Consensus 79 ~~ 80 (260)
T PLN03120 79 DY 80 (260)
T ss_pred CC
Confidence 43
No 23
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.58 E-value=5.7e-15 Score=104.73 Aligned_cols=69 Identities=36% Similarity=0.710 Sum_probs=63.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCceEE
Q 039503 18 VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVIDGRRAN 87 (259)
Q Consensus 18 lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~~l~ 87 (259)
|||+|||+++++++|+++|+.||.|.++++..++. +..+++|||+|.+.++|++|++.++ ..|+|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 8999999999999999999999999 469999875
No 24
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.57 E-value=9.5e-15 Score=142.63 Aligned_cols=77 Identities=27% Similarity=0.505 Sum_probs=73.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-CCCceEEEEEccc
Q 039503 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-IDGRRANCNIASL 93 (259)
Q Consensus 17 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i~G~~l~V~~a~~ 93 (259)
+|||+||+.++||++|+++|++||.|++|+|++|+.|++++|||||+|.+.++|++||+.++.. |.|+.|+|.++..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 7999999999999999999999999999999999999999999999999999999999999965 9999999988753
No 25
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3e-15 Score=126.90 Aligned_cols=87 Identities=33% Similarity=0.467 Sum_probs=81.0
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCceEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVIDGRRANC 88 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~~l~V 88 (259)
+...+.++||||+|..+++|..|...|-.||+|++|.|..|-.++++|||+||+|...++|..||..|| .+|.||.|+|
T Consensus 5 ~~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirV 84 (298)
T KOG0111|consen 5 QMANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRV 84 (298)
T ss_pred cccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEE
Confidence 445667899999999999999999999999999999999999999999999999999999999999999 5799999999
Q ss_pred EEcccCCC
Q 039503 89 NIASLGRP 96 (259)
Q Consensus 89 ~~a~~~~~ 96 (259)
++|++.+-
T Consensus 85 N~AkP~ki 92 (298)
T KOG0111|consen 85 NLAKPEKI 92 (298)
T ss_pred eecCCccc
Confidence 99987543
No 26
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=9.7e-15 Score=127.04 Aligned_cols=81 Identities=41% Similarity=0.607 Sum_probs=76.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-CCCceEEEEEccc
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-IDGRRANCNIASL 93 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i~G~~l~V~~a~~ 93 (259)
...|||+.|..+|+-++||+.|.+||+|.+++|++|..|+|+|||+||.|-+.++||+||..||+. |++|.|+-+||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 557999999999999999999999999999999999999999999999999999999999999975 9999999999976
Q ss_pred CC
Q 039503 94 GR 95 (259)
Q Consensus 94 ~~ 95 (259)
+.
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 54
No 27
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.54 E-value=4.1e-14 Score=136.22 Aligned_cols=82 Identities=26% Similarity=0.478 Sum_probs=76.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEcc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIAS 92 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~ 92 (259)
..++|||+||++.+++++|+++|+.||.|+.+.|+++..+|+++|||||+|.+.++|++||+.|++ .|.|++|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 457999999999999999999999999999999999999999999999999999999999999996 4999999999987
Q ss_pred cCC
Q 039503 93 LGR 95 (259)
Q Consensus 93 ~~~ 95 (259)
...
T Consensus 374 ~~~ 376 (509)
T TIGR01642 374 VGA 376 (509)
T ss_pred cCC
Confidence 543
No 28
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.54 E-value=2.5e-14 Score=138.98 Aligned_cols=76 Identities=33% Similarity=0.475 Sum_probs=68.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CC-CCceEEEE
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VI-DGRRANCN 89 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i-~G~~l~V~ 89 (259)
...++|||+||+++++|++|+++|++||.|.+|+|++| .++++||||||+|.+.++|++||+.||+ +| .|+.|.|.
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 34689999999999999999999999999999999999 7899999999999999999999999984 45 46665554
No 29
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=5.5e-15 Score=135.45 Aligned_cols=87 Identities=29% Similarity=0.449 Sum_probs=78.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC--CCCC--ceEEEE
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP--VIDG--RRANCN 89 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~--~i~G--~~l~V~ 89 (259)
+.+|||||.|+..++|++|+++|++||.|++|.|++|.+ +.+|||+||+|.+++-|..||+.||+ ++.| ..|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 478999999999999999999999999999999999974 89999999999999999999999995 3655 689999
Q ss_pred EcccCCCCCCCC
Q 039503 90 IASLGRPRPSPP 101 (259)
Q Consensus 90 ~a~~~~~~~~~~ 101 (259)
+|..++++..+.
T Consensus 202 FADtqkdk~~~~ 213 (510)
T KOG0144|consen 202 FADTQKDKDGKR 213 (510)
T ss_pred ecccCCCchHHH
Confidence 999988776544
No 30
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.53 E-value=4e-14 Score=134.62 Aligned_cols=79 Identities=38% Similarity=0.682 Sum_probs=75.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEccc
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIASL 93 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~~ 93 (259)
.++|||+||+.+++|++|+++|++||.|+.|.|+.++.+++++|||||+|.+.++|++||+.|++ .|.|+.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 58999999999999999999999999999999999999999999999999999999999999996 59999999999873
No 31
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.53 E-value=2.6e-14 Score=134.42 Aligned_cols=96 Identities=33% Similarity=0.565 Sum_probs=84.1
Q ss_pred CCCCCCCCC--CCCCCc-cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCC
Q 039503 1 MAYPHYRSQ--FGDTTF-TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP 77 (259)
Q Consensus 1 m~~~~~~~~--~~~~~~-~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~ 77 (259)
|++...+.. +-+... +.||||||+.+++|++|..+|+..|.|.+++++.|++||+.|||+|++|.+.+++++|++.|
T Consensus 1 m~~~~~~~~~~~~~~~~~~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~l 80 (435)
T KOG0108|consen 1 MNGAQDRNSRGLNSPGLSSSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNL 80 (435)
T ss_pred CcchhccccccccCcccccceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhc
Confidence 455555554 222223 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCCceEEEEEcccCCC
Q 039503 78 NP-VIDGRRANCNIASLGRP 96 (259)
Q Consensus 78 ~~-~i~G~~l~V~~a~~~~~ 96 (259)
|+ ++.|++|+|+++...+.
T Consensus 81 Ng~~~~gr~l~v~~~~~~~~ 100 (435)
T KOG0108|consen 81 NGAEFNGRKLRVNYASNRKN 100 (435)
T ss_pred CCcccCCceEEeecccccch
Confidence 95 69999999999976554
No 32
>smart00362 RRM_2 RNA recognition motif.
Probab=99.52 E-value=7.8e-14 Score=96.89 Aligned_cols=71 Identities=35% Similarity=0.624 Sum_probs=65.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCceEEEE
Q 039503 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVIDGRRANCN 89 (259)
Q Consensus 17 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~~l~V~ 89 (259)
+|||+||+.++++++|+++|++||.|.++++..++ +.++++|||+|.+.++|++|++.++ ..|.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 6788999999999999999999999 45999998874
No 33
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.52 E-value=5.6e-14 Score=133.61 Aligned_cols=83 Identities=25% Similarity=0.384 Sum_probs=75.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEEEc
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCNIA 91 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~~a 91 (259)
+...++|||+||+.++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||......|.|+.|.|.++
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 34578999999999999999999999999999999999999999999999999999999999984445699999999887
Q ss_pred ccC
Q 039503 92 SLG 94 (259)
Q Consensus 92 ~~~ 94 (259)
...
T Consensus 166 ~~~ 168 (457)
T TIGR01622 166 QAE 168 (457)
T ss_pred chh
Confidence 543
No 34
>PLN03213 repressor of silencing 3; Provisional
Probab=99.52 E-value=4.5e-14 Score=131.45 Aligned_cols=78 Identities=18% Similarity=0.336 Sum_probs=70.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCH--HHHHHHHhCCCC-CCCCceEEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDP--ESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~--~~A~~Al~~~~~-~i~G~~l~V 88 (259)
.....+||||||.+++++++|+.+|+.||.|.+|.|++ .|| ||||||+|.+. +++.+||..||+ ++.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 34568999999999999999999999999999999994 456 99999999987 789999999996 599999999
Q ss_pred EEccc
Q 039503 89 NIASL 93 (259)
Q Consensus 89 ~~a~~ 93 (259)
+.|+.
T Consensus 83 NKAKP 87 (759)
T PLN03213 83 EKAKE 87 (759)
T ss_pred eeccH
Confidence 99865
No 35
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=3.3e-15 Score=123.32 Aligned_cols=80 Identities=35% Similarity=0.607 Sum_probs=74.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-CCCceEEEEEcc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-IDGRRANCNIAS 92 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i~G~~l~V~~a~ 92 (259)
++.-||||||+.+.||.||.-+|++||+|++|.|++|+.||+++||||++|++..+.--||..+|+. |.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 3667999999999999999999999999999999999999999999999999999999999999975 999999998654
Q ss_pred c
Q 039503 93 L 93 (259)
Q Consensus 93 ~ 93 (259)
.
T Consensus 114 ~ 114 (219)
T KOG0126|consen 114 N 114 (219)
T ss_pred c
Confidence 4
No 36
>smart00360 RRM RNA recognition motif.
Probab=99.50 E-value=1.1e-13 Score=95.63 Aligned_cols=70 Identities=40% Similarity=0.683 Sum_probs=65.1
Q ss_pred EcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCceEEEE
Q 039503 20 VGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVIDGRRANCN 89 (259)
Q Consensus 20 VgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~~l~V~ 89 (259)
|+||+.++++++|+++|+.||.|.++.+..++.+++++++|||+|.+.++|.+|++.++ ..|+|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988788999999999999999999999999 45999998874
No 37
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.50 E-value=1e-13 Score=119.39 Aligned_cols=78 Identities=33% Similarity=0.665 Sum_probs=74.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEcc
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIAS 92 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~ 92 (259)
.++|||+||+.++++++|+++|.+||.|..|.|..|+.+++++|||||+|.+.+++.+||+.+++ .|.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 59999999999999999999999999999999999998999999999999999999999999994 6999999999965
No 38
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.48 E-value=2.2e-13 Score=117.99 Aligned_cols=76 Identities=18% Similarity=0.163 Sum_probs=67.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEEEcc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCNIAS 92 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~~a~ 92 (259)
...+|||+||++.+||++|+++|+.||+|++|+|++|. +.++||||+|++.++++.||...+.+|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 35789999999999999999999999999999999984 44689999999999999999655577999999887654
No 39
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1.3e-13 Score=127.07 Aligned_cols=79 Identities=30% Similarity=0.483 Sum_probs=72.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCC-CCceEEEEE
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVI-DGRRANCNI 90 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i-~G~~l~V~~ 90 (259)
..-|.||||.||.++.|++|+-+|++.|+|-+++|++|+.+|.+||||||+|.+.++|++||+.|| .+| .|+.|.|.+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 356899999999999999999999999999999999999999999999999999999999999999 455 688888765
Q ss_pred c
Q 039503 91 A 91 (259)
Q Consensus 91 a 91 (259)
+
T Consensus 161 S 161 (506)
T KOG0117|consen 161 S 161 (506)
T ss_pred e
Confidence 4
No 40
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=2e-13 Score=118.46 Aligned_cols=85 Identities=28% Similarity=0.473 Sum_probs=79.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNI 90 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~ 90 (259)
+...++|.|.-||.++|+|+||.+|...|+|++|++++||.+|.+.||+||.|.+.++|++||..+|+ .+..+.|+|++
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 44567899999999999999999999999999999999999999999999999999999999999996 59999999999
Q ss_pred cccCCC
Q 039503 91 ASLGRP 96 (259)
Q Consensus 91 a~~~~~ 96 (259)
|++...
T Consensus 118 ARPSs~ 123 (360)
T KOG0145|consen 118 ARPSSD 123 (360)
T ss_pred ccCChh
Confidence 987654
No 41
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=2.4e-13 Score=107.44 Aligned_cols=82 Identities=26% Similarity=0.402 Sum_probs=76.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEccc
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIASL 93 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~~ 93 (259)
.--|||.++..+++|++|.+.|..||+|+.|.|..|+.||-.|||++|+|++.+.|.+||..+|+ .|.|..|.|.|+..
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 44799999999999999999999999999999999999999999999999999999999999995 59999999999976
Q ss_pred CCC
Q 039503 94 GRP 96 (259)
Q Consensus 94 ~~~ 96 (259)
+..
T Consensus 152 ~gp 154 (170)
T KOG0130|consen 152 KGP 154 (170)
T ss_pred cCC
Confidence 544
No 42
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.43 E-value=9.9e-13 Score=91.74 Aligned_cols=73 Identities=37% Similarity=0.660 Sum_probs=66.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-CCCceEEEEE
Q 039503 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-IDGRRANCNI 90 (259)
Q Consensus 17 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i~G~~l~V~~ 90 (259)
+|+|+||+.++++++|+++|+.||.|..+.+..++.+ +.+++|||+|.+.++|..|++.+++. ++|++|.|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987654 67899999999999999999999965 9999998864
No 43
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.43 E-value=1.6e-13 Score=120.49 Aligned_cols=72 Identities=35% Similarity=0.589 Sum_probs=67.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEccc
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIASL 93 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~~ 93 (259)
..+||||||+.++++.+|+.+|++||+|++|+|+ |.||||+.++...++.||..|++ +|+|..|+|+.++.
T Consensus 2 ~~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 2 PVKLFIGNLPREATEQELRSLFEQYGKVLECDIV--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred ccchhccCCCcccchHHHHHHHHhhCceEeeeee--------cccceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 3589999999999999999999999999999998 45999999999999999999997 59999999998876
Q ss_pred C
Q 039503 94 G 94 (259)
Q Consensus 94 ~ 94 (259)
+
T Consensus 74 K 74 (346)
T KOG0109|consen 74 K 74 (346)
T ss_pred c
Confidence 6
No 44
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.42 E-value=1e-12 Score=126.43 Aligned_cols=78 Identities=17% Similarity=0.234 Sum_probs=70.6
Q ss_pred CCccEEEEcCCCC-CCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEE
Q 039503 13 TTFTKVFVGGLAW-ETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNI 90 (259)
Q Consensus 13 ~~~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~ 90 (259)
...++|||+||++ .+++++|+++|+.||.|++|+|++++ +|||||+|.+.++|++||+.||+ .|.|++|+|++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 3568999999998 69999999999999999999999863 69999999999999999999996 59999999999
Q ss_pred cccCC
Q 039503 91 ASLGR 95 (259)
Q Consensus 91 a~~~~ 95 (259)
++...
T Consensus 348 s~~~~ 352 (481)
T TIGR01649 348 SKQQN 352 (481)
T ss_pred ccccc
Confidence 86543
No 45
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.41 E-value=2.1e-13 Score=112.61 Aligned_cols=80 Identities=33% Similarity=0.414 Sum_probs=76.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEc
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIA 91 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a 91 (259)
....+|||+||+..++|+.|.++|-+.|.|.+++|.+|+.+.+.+|||||+|.++++|+-||+.||. .+.|++|+|+.+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 3467999999999999999999999999999999999999999999999999999999999999995 499999999998
Q ss_pred c
Q 039503 92 S 92 (259)
Q Consensus 92 ~ 92 (259)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 46
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.40 E-value=3.9e-13 Score=121.57 Aligned_cols=83 Identities=39% Similarity=0.761 Sum_probs=78.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEEEccc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCNIASL 93 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~~a~~ 93 (259)
+.++|||++|+|+++||.|++.|++||+|.+|.|++|+.+++++||+||+|++.+.+.++|....++|+|+.|.++.|..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 68999999999999999999999999999999999999999999999999999999999999988999999999998876
Q ss_pred CCC
Q 039503 94 GRP 96 (259)
Q Consensus 94 ~~~ 96 (259)
...
T Consensus 85 r~~ 87 (311)
T KOG4205|consen 85 RED 87 (311)
T ss_pred ccc
Confidence 543
No 47
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.38 E-value=1.9e-12 Score=124.56 Aligned_cols=74 Identities=22% Similarity=0.262 Sum_probs=67.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCC--C-CCCCCceEEEEEc
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP--N-PVIDGRRANCNIA 91 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~--~-~~i~G~~l~V~~a 91 (259)
+++|||+||+++++|++|+++|++||.|++|+|+++ |+||||+|++.++|++||+.+ + ..|.|+.|.|+++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 578999999999999999999999999999999864 689999999999999999975 4 3599999999998
Q ss_pred ccC
Q 039503 92 SLG 94 (259)
Q Consensus 92 ~~~ 94 (259)
..+
T Consensus 76 ~~~ 78 (481)
T TIGR01649 76 TSQ 78 (481)
T ss_pred CCc
Confidence 654
No 48
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=5.6e-12 Score=95.46 Aligned_cols=80 Identities=24% Similarity=0.406 Sum_probs=70.3
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-CCCceEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-IDGRRANC 88 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i~G~~l~V 88 (259)
....-++-|||+|||+++|.|++.++|.+||.|..|+|-..+. -+|-|||.|++..+|.+||+.|.+. ++++.|.|
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 4444577899999999999999999999999999999977654 4899999999999999999999975 99999988
Q ss_pred EEcc
Q 039503 89 NIAS 92 (259)
Q Consensus 89 ~~a~ 92 (259)
-+-.
T Consensus 90 lyyq 93 (124)
T KOG0114|consen 90 LYYQ 93 (124)
T ss_pred EecC
Confidence 7643
No 49
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.34 E-value=6.3e-12 Score=117.75 Aligned_cols=83 Identities=28% Similarity=0.399 Sum_probs=71.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEEEcccC
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCNIASLG 94 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~~a~~~ 94 (259)
...|||+|||.++++++|+++|.+||.|++..|......++..+||||+|++.++++.||+.....|++++|.|+..+..
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 44599999999999999999999999999998876543455569999999999999999999866799999999988765
Q ss_pred CCC
Q 039503 95 RPR 97 (259)
Q Consensus 95 ~~~ 97 (259)
...
T Consensus 368 ~~g 370 (419)
T KOG0116|consen 368 FRG 370 (419)
T ss_pred ccc
Confidence 433
No 50
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=1e-12 Score=114.38 Aligned_cols=85 Identities=28% Similarity=0.411 Sum_probs=79.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-CCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-IDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i~G~~l~V~ 89 (259)
+..+.|+|||-+||.++.+.||.++|-.||.|.+.+|..|+.|..+|+|+||.|++..++..||..||+. |+-++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 4456899999999999999999999999999999999999999999999999999999999999999975 999999999
Q ss_pred EcccCC
Q 039503 90 IASLGR 95 (259)
Q Consensus 90 ~a~~~~ 95 (259)
+.+++.
T Consensus 361 LKRPkd 366 (371)
T KOG0146|consen 361 LKRPKD 366 (371)
T ss_pred hcCccc
Confidence 887654
No 51
>smart00361 RRM_1 RNA recognition motif.
Probab=99.31 E-value=7.9e-12 Score=89.21 Aligned_cols=61 Identities=30% Similarity=0.469 Sum_probs=54.2
Q ss_pred HHHHHHHHh----hCCCEEEEE-EeecCCC--CCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 29 TEEMRRYFE----QFGDILEAV-IISDKNT--GKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 29 e~~L~~~F~----~~G~I~~v~-i~~d~~t--g~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
+++|+++|+ +||.|.+|. |+.++.+ ++++||+||+|.+.++|++||+.||+ .|.|+.|+|+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 678899998 999999995 7777766 88999999999999999999999995 5999999863
No 52
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.30 E-value=1.1e-11 Score=114.07 Aligned_cols=78 Identities=22% Similarity=0.458 Sum_probs=71.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHH-hhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEcc
Q 039503 15 FTKVFVGGLAWETPTEEMRRYF-EQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIAS 92 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~ 92 (259)
.+.+||.||++++.+.+||++| ++.|+|+.|.|+.|. +||.||||.|+|+++|.++||++.||+ .++|+.|.|+...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 4569999999999999999999 678999999999996 699999999999999999999999994 6999999998765
Q ss_pred c
Q 039503 93 L 93 (259)
Q Consensus 93 ~ 93 (259)
.
T Consensus 123 d 123 (608)
T KOG4212|consen 123 D 123 (608)
T ss_pred c
Confidence 4
No 53
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=5.3e-12 Score=118.92 Aligned_cols=79 Identities=28% Similarity=0.492 Sum_probs=72.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCceEEEEEccc
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVIDGRRANCNIASL 93 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~~l~V~~a~~ 93 (259)
.-+|+|+||||.+.+.+|+.+|+.||.|.+|.|.+.++ ++-+|||||.|.+..+|++||+.+| .+|+||.|.|.||-.
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 56899999999999999999999999999999997765 5556999999999999999999999 569999999999865
Q ss_pred C
Q 039503 94 G 94 (259)
Q Consensus 94 ~ 94 (259)
+
T Consensus 196 K 196 (678)
T KOG0127|consen 196 K 196 (678)
T ss_pred c
Confidence 4
No 54
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=9.8e-12 Score=108.00 Aligned_cols=80 Identities=25% Similarity=0.332 Sum_probs=75.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-CCCceEEEEEcc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-IDGRRANCNIAS 92 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i~G~~l~V~~a~ 92 (259)
.--.|||-||..+++|..|.++|..||.|..|+|++|..|.+.|||+||++.+.++|..||..||+. +.+|.|.|.+..
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 4567999999999999999999999999999999999999999999999999999999999999975 999999999875
Q ss_pred c
Q 039503 93 L 93 (259)
Q Consensus 93 ~ 93 (259)
.
T Consensus 357 n 357 (360)
T KOG0145|consen 357 N 357 (360)
T ss_pred C
Confidence 4
No 55
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=8.6e-12 Score=117.53 Aligned_cols=82 Identities=34% Similarity=0.592 Sum_probs=74.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCC----C-C--CCCCce
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP----N-P--VIDGRR 85 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~----~-~--~i~G~~ 85 (259)
...++|||+||+++++|++|.++|++||+|..+.|+.++.|+.++|.|||.|.+..++.+||+.- . + .|+||.
T Consensus 290 ~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~ 369 (678)
T KOG0127|consen 290 TEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRL 369 (678)
T ss_pred cccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccE
Confidence 34589999999999999999999999999999999999999999999999999999999999987 2 3 389999
Q ss_pred EEEEEcccC
Q 039503 86 ANCNIASLG 94 (259)
Q Consensus 86 l~V~~a~~~ 94 (259)
|.|.+|-.+
T Consensus 370 Lkv~~Av~R 378 (678)
T KOG0127|consen 370 LKVTLAVTR 378 (678)
T ss_pred Eeeeeccch
Confidence 999988653
No 56
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=3.5e-12 Score=114.81 Aligned_cols=80 Identities=31% Similarity=0.493 Sum_probs=75.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-CCCceEEEEEcc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-IDGRRANCNIAS 92 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i~G~~l~V~~a~ 92 (259)
..+.|||..|+.-++++||+-+|+.||.|..|.||+|+.||.+..||||+|++.+++++|.-+|+.+ |+.++|+|.++.
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 4678999999999999999999999999999999999999999999999999999999999999865 999999998875
Q ss_pred c
Q 039503 93 L 93 (259)
Q Consensus 93 ~ 93 (259)
.
T Consensus 318 S 318 (479)
T KOG0415|consen 318 S 318 (479)
T ss_pred h
Confidence 4
No 57
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=2.9e-12 Score=115.78 Aligned_cols=77 Identities=32% Similarity=0.600 Sum_probs=73.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEE
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNI 90 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~ 90 (259)
..|+||||.|.+++.|+.|+..|..||.|++|.+.+|..|+++|||+||+|+-.|.|.-|++.||+ +++||.|+|..
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 478999999999999999999999999999999999999999999999999999999999999996 59999999864
No 58
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=1.3e-11 Score=110.86 Aligned_cols=78 Identities=32% Similarity=0.513 Sum_probs=70.7
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-C-CCCCceEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-P-VIDGRRAN 87 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~-~i~G~~l~ 87 (259)
..|+..++|||++|...++|.+|+++|.+||+|+.|+++.. +++|||+|.++++|++|.+++- . .|+|++|.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 46888999999999999999999999999999999999865 5699999999999999998865 3 49999999
Q ss_pred EEEccc
Q 039503 88 CNIASL 93 (259)
Q Consensus 88 V~~a~~ 93 (259)
|.|.+.
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 998876
No 59
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.25 E-value=4.2e-11 Score=108.46 Aligned_cols=84 Identities=33% Similarity=0.596 Sum_probs=78.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEEEccc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCNIASL 93 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~~a~~ 93 (259)
..++|||++|+.+++|++|+++|++||.|.++.|+.|+.+.+.++|+||+|.+++++++++...-+.|+++.++|..|.+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 36699999999999999999999999999999999999999999999999999999999998888899999999999987
Q ss_pred CCCC
Q 039503 94 GRPR 97 (259)
Q Consensus 94 ~~~~ 97 (259)
+...
T Consensus 176 k~~~ 179 (311)
T KOG4205|consen 176 KEVM 179 (311)
T ss_pred hhhc
Confidence 6543
No 60
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.25 E-value=1.1e-11 Score=102.47 Aligned_cols=80 Identities=26% Similarity=0.431 Sum_probs=73.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEE-EEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEccc
Q 039503 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEA-VIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIASL 93 (259)
Q Consensus 16 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v-~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~~ 93 (259)
.+|||+||..+++|..|.+.|+.||.|... +|++|..||+.++|+||.|++.+.+.+||+.+|+ .++.++|.|.++..
T Consensus 97 anlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k 176 (203)
T KOG0131|consen 97 ANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFK 176 (203)
T ss_pred ccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEe
Confidence 689999999999999999999999998764 8999999999999999999999999999999996 58999999999976
Q ss_pred CC
Q 039503 94 GR 95 (259)
Q Consensus 94 ~~ 95 (259)
+.
T Consensus 177 ~~ 178 (203)
T KOG0131|consen 177 KD 178 (203)
T ss_pred cC
Confidence 43
No 61
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.25 E-value=1.9e-11 Score=83.21 Aligned_cols=55 Identities=29% Similarity=0.586 Sum_probs=48.9
Q ss_pred HHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-CCCceEEEEEc
Q 039503 32 MRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-IDGRRANCNIA 91 (259)
Q Consensus 32 L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i~G~~l~V~~a 91 (259)
|+++|++||+|+++.+..++ +++|||+|.+.++|++|++.+|+. |+|++|+|++|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999997653 689999999999999999999964 99999999985
No 62
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1.1e-11 Score=108.16 Aligned_cols=88 Identities=27% Similarity=0.455 Sum_probs=77.0
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC--CCCC--ce
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP--VIDG--RR 85 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~--~i~G--~~ 85 (259)
....+.+|||||.|...-.|||++++|..||.|++|.+++..+ |.+|||+||.|.+..+|..||..|++ ++-| ..
T Consensus 14 srg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSS 92 (371)
T KOG0146|consen 14 SRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSS 92 (371)
T ss_pred cCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccc
Confidence 3344689999999999999999999999999999999998864 88999999999999999999999994 4655 57
Q ss_pred EEEEEcccCCCCC
Q 039503 86 ANCNIASLGRPRP 98 (259)
Q Consensus 86 l~V~~a~~~~~~~ 98 (259)
|.|+++...+.|.
T Consensus 93 LVVK~ADTdkER~ 105 (371)
T KOG0146|consen 93 LVVKFADTDKERT 105 (371)
T ss_pred eEEEeccchHHHH
Confidence 8999998776554
No 63
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=99.22 E-value=8.6e-10 Score=99.37 Aligned_cols=74 Identities=18% Similarity=0.425 Sum_probs=64.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCC--CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCceEE
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFG--DILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVIDGRRAN 87 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~~l~ 87 (259)
..-.+|||||-|++|++||.+.+...| .|.+++++.++.+|.+||||+|...+..++++.++.|. ++|.|+.-.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~ 155 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPT 155 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCe
Confidence 345799999999999999999887766 67888899999999999999999999999999999998 568886433
No 64
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.22 E-value=1.1e-11 Score=116.89 Aligned_cols=79 Identities=33% Similarity=0.648 Sum_probs=73.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEccc
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIASL 93 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~~ 93 (259)
..+||||||.++++|++|+.+|+.||.|+.|.+.+|..||.+|||+||+|.+.++|.+|++.||+ +|-|+.|+|.+-..
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 44499999999999999999999999999999999999999999999999999999999999996 59999999876543
No 65
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=5.5e-11 Score=110.56 Aligned_cols=79 Identities=32% Similarity=0.587 Sum_probs=71.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-CCCceEEEEEcccCCC
Q 039503 18 VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-IDGRRANCNIASLGRP 96 (259)
Q Consensus 18 lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i~G~~l~V~~a~~~~~ 96 (259)
|||.||+.+++.++|.++|+.||+|++|+|.+|.. | ++|| ||+|+++++|.+||+.+|++ +.+++|.|.+...+..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 99999999999999999999999999999999864 4 8999 99999999999999999975 8999999988876655
Q ss_pred CCC
Q 039503 97 RPS 99 (259)
Q Consensus 97 ~~~ 99 (259)
|..
T Consensus 156 r~~ 158 (369)
T KOG0123|consen 156 REA 158 (369)
T ss_pred hcc
Confidence 443
No 66
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.18 E-value=5e-11 Score=116.15 Aligned_cols=81 Identities=19% Similarity=0.386 Sum_probs=71.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
-..-++|||||+|+.+++|.||+.+|+.||+|.+|.++.. ++||||++..+.+|++||.+|+. .|.++.|+|.
T Consensus 417 isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~ 490 (894)
T KOG0132|consen 417 ISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIA 490 (894)
T ss_pred eeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEe
Confidence 3345789999999999999999999999999999998764 88999999999999999999985 5999999999
Q ss_pred EcccCCCC
Q 039503 90 IASLGRPR 97 (259)
Q Consensus 90 ~a~~~~~~ 97 (259)
|+..+..+
T Consensus 491 Wa~g~G~k 498 (894)
T KOG0132|consen 491 WAVGKGPK 498 (894)
T ss_pred eeccCCcc
Confidence 99755433
No 67
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.15 E-value=6.7e-11 Score=104.21 Aligned_cols=77 Identities=26% Similarity=0.465 Sum_probs=70.3
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
.++..+||+||||.+.++.++|+..|++||.|.+|+|++ +|+||+|+-.++|..||+.||+ +|.|++++|.
T Consensus 74 Ksk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq 145 (346)
T KOG0109|consen 74 KSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQ 145 (346)
T ss_pred cCCCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccccccceeeee
Confidence 356788999999999999999999999999999999984 5999999999999999999995 6999999999
Q ss_pred EcccCC
Q 039503 90 IASLGR 95 (259)
Q Consensus 90 ~a~~~~ 95 (259)
++..+-
T Consensus 146 ~stsrl 151 (346)
T KOG0109|consen 146 LSTSRL 151 (346)
T ss_pred eecccc
Confidence 987543
No 68
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.13 E-value=1.7e-10 Score=98.56 Aligned_cols=81 Identities=25% Similarity=0.394 Sum_probs=72.6
Q ss_pred CccEEEEcCCCCCCCHHHHHH----HHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-CCCceEEE
Q 039503 14 TFTKVFVGGLAWETPTEEMRR----YFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-IDGRRANC 88 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~----~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i~G~~l~V 88 (259)
.+.+|||.||++.+..++|++ +|++||+|.+|...+ |.+.||-|||.|.+.+.|-.|++.|++. +.|+.++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 345999999999999999998 999999999998864 5778999999999999999999999976 99999999
Q ss_pred EEcccCCCC
Q 039503 89 NIASLGRPR 97 (259)
Q Consensus 89 ~~a~~~~~~ 97 (259)
.+|+.+..-
T Consensus 85 qyA~s~sdi 93 (221)
T KOG4206|consen 85 QYAKSDSDI 93 (221)
T ss_pred ecccCccch
Confidence 999876543
No 69
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.11 E-value=2.4e-10 Score=96.36 Aligned_cols=84 Identities=27% Similarity=0.425 Sum_probs=75.0
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhC-CCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-CCCceEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQF-GDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-IDGRRANC 88 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i~G~~l~V 88 (259)
......-++|+.|+.-+.|.+|..+|.+| |.|+.+++-+++.||.+||||||+|++.+.|+-|.+.||.. |.++.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34456679999999999999999999998 77888888899999999999999999999999999999975 88899999
Q ss_pred EEcccC
Q 039503 89 NIASLG 94 (259)
Q Consensus 89 ~~a~~~ 94 (259)
.+-.+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 887654
No 70
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.10 E-value=2.7e-10 Score=109.75 Aligned_cols=75 Identities=20% Similarity=0.327 Sum_probs=59.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhC------------CCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQF------------GDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN 78 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~------------G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~ 78 (259)
.+...++||||||++++++++|+++|.++ +.|..+.+ .+.+|||||+|.+.++|++||+ |+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CC
Confidence 34457899999999999999999999975 23333333 3458999999999999999995 77
Q ss_pred C-CCCCceEEEEEcc
Q 039503 79 P-VIDGRRANCNIAS 92 (259)
Q Consensus 79 ~-~i~G~~l~V~~a~ 92 (259)
+ .|.|+.|+|....
T Consensus 244 g~~~~g~~l~v~r~~ 258 (509)
T TIGR01642 244 SIIYSNVFLKIRRPH 258 (509)
T ss_pred CeEeeCceeEecCcc
Confidence 5 5999999886543
No 71
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=1.9e-10 Score=104.08 Aligned_cols=80 Identities=20% Similarity=0.428 Sum_probs=74.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCceEEEEEcc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVIDGRRANCNIAS 92 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~~l~V~~a~ 92 (259)
..++|||..+..+.+|+||+.+|+.||+|+.|.+-++..++.+|||+||+|.+..+...||..|| -.++|..|+|-.+-
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 46799999999999999999999999999999999999999999999999999999999999999 46999999998765
Q ss_pred c
Q 039503 93 L 93 (259)
Q Consensus 93 ~ 93 (259)
.
T Consensus 289 T 289 (544)
T KOG0124|consen 289 T 289 (544)
T ss_pred C
Confidence 4
No 72
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.06 E-value=3e-10 Score=107.71 Aligned_cols=82 Identities=21% Similarity=0.432 Sum_probs=74.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNI 90 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~ 90 (259)
.+..++|||.+|...+...||+.+|++||+|+-++|+++..+--.++|+||++.+.++|.+||+.|+. +|.|+.|.|+.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 34567899999999999999999999999999999999877777899999999999999999999995 59999999998
Q ss_pred ccc
Q 039503 91 ASL 93 (259)
Q Consensus 91 a~~ 93 (259)
++.
T Consensus 482 aKN 484 (940)
T KOG4661|consen 482 AKN 484 (940)
T ss_pred ccc
Confidence 864
No 73
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.03 E-value=1.9e-10 Score=99.74 Aligned_cols=86 Identities=35% Similarity=0.509 Sum_probs=79.3
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V 88 (259)
..+++..+||+|.|..+++++.|.+.|.+|-.....++++|+.|++++||+||.|.+..++.+|+++|++ .++.+.|++
T Consensus 185 ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 4567789999999999999999999999999999999999999999999999999999999999999996 599999988
Q ss_pred EEcccCC
Q 039503 89 NIASLGR 95 (259)
Q Consensus 89 ~~a~~~~ 95 (259)
+.+.++.
T Consensus 265 RkS~wke 271 (290)
T KOG0226|consen 265 RKSEWKE 271 (290)
T ss_pred hhhhHHh
Confidence 8777654
No 74
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.96 E-value=1e-09 Score=101.39 Aligned_cols=74 Identities=32% Similarity=0.527 Sum_probs=66.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEc
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIA 91 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a 91 (259)
.+.|+|||+|||+++|+..|++-|..||.|+.++|+. .|++|| .|.|.+.++|++||..|++ .|+|+.|+|.+.
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 4578899999999999999999999999999999954 477786 9999999999999999996 599999999863
No 75
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=5.2e-10 Score=108.35 Aligned_cols=84 Identities=27% Similarity=0.487 Sum_probs=75.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-CCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-IDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i~G~~l~V~ 89 (259)
.+...++|+|+||++..+..+|+++|..||.|++|+|......+.++|||||+|-+.++|.+|++.|..+ +.||+|.++
T Consensus 609 ~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLE 688 (725)
T KOG0110|consen 609 KKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLE 688 (725)
T ss_pred cccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhhee
Confidence 3445789999999999999999999999999999999877566778999999999999999999999854 999999999
Q ss_pred EcccC
Q 039503 90 IASLG 94 (259)
Q Consensus 90 ~a~~~ 94 (259)
||+..
T Consensus 689 wA~~d 693 (725)
T KOG0110|consen 689 WAKSD 693 (725)
T ss_pred hhccc
Confidence 99764
No 76
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=1.6e-09 Score=104.96 Aligned_cols=79 Identities=35% Similarity=0.576 Sum_probs=69.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCC---CcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTG---KSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg---~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
..++|||.||+++++.++|+.+|.+.|.|+.|+|...++.. .+.|||||+|.+.++|++|++.|++ .|+|+.|.|+
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 34459999999999999999999999999999988665322 2459999999999999999999995 5999999999
Q ss_pred Ecc
Q 039503 90 IAS 92 (259)
Q Consensus 90 ~a~ 92 (259)
++.
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 998
No 77
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.91 E-value=4.3e-09 Score=92.16 Aligned_cols=83 Identities=30% Similarity=0.472 Sum_probs=74.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-CCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-IDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i~G~~l~V~ 89 (259)
.++..++|+|.||+..++++||+++|+.||+++.+-|..|+ .|.+.|.|-|.|...++|++||+.++.+ ++|+.|+++
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 44556899999999999999999999999999999888886 5999999999999999999999999976 999999998
Q ss_pred EcccC
Q 039503 90 IASLG 94 (259)
Q Consensus 90 ~a~~~ 94 (259)
+....
T Consensus 158 ~i~~~ 162 (243)
T KOG0533|consen 158 IISSP 162 (243)
T ss_pred EecCc
Confidence 77553
No 78
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.90 E-value=3.1e-09 Score=92.84 Aligned_cols=85 Identities=21% Similarity=0.350 Sum_probs=78.5
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCceEE
Q 039503 9 QFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVIDGRRAN 87 (259)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~~l~ 87 (259)
...+.+.+.+||+||...++.++|+.+|+.||.|..+.|..|+.++..|+|+||+|.+.+.++++++ || ..|.++.|+
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIE 173 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccce
Confidence 3567889999999999999999999999999999999999999999999999999999999999999 77 569999999
Q ss_pred EEEcccC
Q 039503 88 CNIASLG 94 (259)
Q Consensus 88 V~~a~~~ 94 (259)
|.+.+..
T Consensus 174 vt~~r~~ 180 (231)
T KOG4209|consen 174 VTLKRTN 180 (231)
T ss_pred eeeeeee
Confidence 9988765
No 79
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=5e-09 Score=97.56 Aligned_cols=73 Identities=27% Similarity=0.438 Sum_probs=67.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEcccC
Q 039503 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIASLG 94 (259)
Q Consensus 16 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~~~ 94 (259)
..|||| .++||++|.++|+.+|.|++++|.+|. | +.|||||.|.+.++|++||+.+|. .|.|++|+|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 899999999999999999999999998 6 999999999999999999999995 599999999988643
No 80
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=3.5e-09 Score=90.95 Aligned_cols=71 Identities=28% Similarity=0.580 Sum_probs=64.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEcccC
Q 039503 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIASLG 94 (259)
Q Consensus 16 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~~~ 94 (259)
.+||||+|++.+.+++|+.+|..||.|.+|.+. .+|+||+|.+..+|+.||..+|+ +|++.++.|++++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 579999999999999999999999999999874 57999999999999999999995 588888888888654
No 81
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.76 E-value=3.4e-08 Score=89.05 Aligned_cols=85 Identities=21% Similarity=0.317 Sum_probs=75.4
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEE--------EEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-
Q 039503 9 QFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILE--------AVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP- 79 (259)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~- 79 (259)
.++...++.|||.|||.++|.+++.++|++||.|.+ |+|-++.. |+.||=|+++|-.+++++-||+.|+.
T Consensus 128 ~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~ 206 (382)
T KOG1548|consen 128 NPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDED 206 (382)
T ss_pred CcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcc
Confidence 345677888999999999999999999999998764 67777765 99999999999999999999999995
Q ss_pred CCCCceEEEEEcccC
Q 039503 80 VIDGRRANCNIASLG 94 (259)
Q Consensus 80 ~i~G~~l~V~~a~~~ 94 (259)
.|.|++|+|+.|+..
T Consensus 207 ~~rg~~~rVerAkfq 221 (382)
T KOG1548|consen 207 ELRGKKLRVERAKFQ 221 (382)
T ss_pred cccCcEEEEehhhhh
Confidence 599999999998754
No 82
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.76 E-value=6.1e-08 Score=82.95 Aligned_cols=86 Identities=22% Similarity=0.309 Sum_probs=69.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEe-ecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-C---CCceEE
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVII-SDKNTGKSKGYGFVTFRDPESARRACDNPNPV-I---DGRRAN 87 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~-~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i---~G~~l~ 87 (259)
..+++|||.+||.++.-.+|..+|..|-..+.+.|. .++.....+-+|||+|.+..+|++|+..||++ | .+..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 348999999999999999999999998766666553 33333345689999999999999999999975 5 467899
Q ss_pred EEEcccCCCCC
Q 039503 88 CNIASLGRPRP 98 (259)
Q Consensus 88 V~~a~~~~~~~ 98 (259)
|++|+....++
T Consensus 112 iElAKSNtK~k 122 (284)
T KOG1457|consen 112 IELAKSNTKRK 122 (284)
T ss_pred eeehhcCcccc
Confidence 99998765433
No 83
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.68 E-value=5.7e-08 Score=91.09 Aligned_cols=77 Identities=23% Similarity=0.402 Sum_probs=66.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEEEcc
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCNIAS 92 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~~a~ 92 (259)
.+...|-+++|||++|++||.+||+.++ |+++++.+ .+|+..|-|||+|++++++++||++....+..+-|+|-.+.
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAG 84 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccC
Confidence 3456788899999999999999999997 77766655 47999999999999999999999987777889999997763
No 84
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.65 E-value=1.6e-08 Score=95.92 Aligned_cols=73 Identities=27% Similarity=0.349 Sum_probs=64.9
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRAN 87 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~ 87 (259)
..+....+|+|-||+.+|++++|+++|+.||+|++|+.. -..++.+||+|.|..+|++|++.++. +|.|++|+
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 346678899999999999999999999999999997653 34589999999999999999999994 69999888
No 85
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.56 E-value=2.4e-07 Score=84.05 Aligned_cols=85 Identities=25% Similarity=0.304 Sum_probs=76.1
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEE--------EEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCC
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILE--------AVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVI 81 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i 81 (259)
....+.+|||-+|+..+++++|.++|.++|.|+. |+|-+|++|++.|+-|.|+|+|...|+.||+.++ ..|
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 4556789999999999999999999999998864 6677899999999999999999999999999999 469
Q ss_pred CCceEEEEEcccCC
Q 039503 82 DGRRANCNIASLGR 95 (259)
Q Consensus 82 ~G~~l~V~~a~~~~ 95 (259)
.+..|+|.+|....
T Consensus 142 ~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 CGNTIKVSLAERRT 155 (351)
T ss_pred cCCCchhhhhhhcc
Confidence 99999999987654
No 86
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.56 E-value=2.6e-08 Score=84.94 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=67.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-CCCceEEEEEc
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-IDGRRANCNIA 91 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i~G~~l~V~~a 91 (259)
...++|||+||...++|+.|.++|-+-|.|.+|.|..+++ ++.| ||||.|.++.++.-|++.+|++ +.++.|.|.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 3467899999999999999999999999999999887764 5556 9999999999999999999964 88877777654
No 87
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.47 E-value=1.1e-06 Score=66.69 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=65.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhh--CCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC----C-CCceEEE
Q 039503 16 TKVFVGGLAWETPTEEMRRYFEQ--FGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV----I-DGRRANC 88 (259)
Q Consensus 16 ~~lfVgnLp~~~te~~L~~~F~~--~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~----i-~G~~l~V 88 (259)
++|.|+|||...+.++|.+++.. .|...-+.+..|..++.+.|||||.|.+.+.|.+-.+..++. + ..+.++|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999999865 367777888899888999999999999999999999988742 3 3456678
Q ss_pred EEccc
Q 039503 89 NIASL 93 (259)
Q Consensus 89 ~~a~~ 93 (259)
.+|+.
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88764
No 88
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.44 E-value=2.6e-07 Score=89.96 Aligned_cols=83 Identities=22% Similarity=0.358 Sum_probs=71.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecC---CCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDK---NTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRA 86 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~---~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l 86 (259)
+|...++|||+||+..++|+.|...|..||.|..|+|+.-+ ...+.+.|+||.|-++.++++|++.|++ +|.+..+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 46667899999999999999999999999999999998643 2344578999999999999999999996 4889999
Q ss_pred EEEEccc
Q 039503 87 NCNIASL 93 (259)
Q Consensus 87 ~V~~a~~ 93 (259)
++.|++.
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 9888753
No 89
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.31 E-value=1e-06 Score=84.17 Aligned_cols=90 Identities=23% Similarity=0.446 Sum_probs=80.8
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-CCCceEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-IDGRRANC 88 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i~G~~l~V 88 (259)
..-...++|||++|+..++++.++++++.||.++...++.|..+|.++||||.+|.+......||..+|++ +.+++|.|
T Consensus 284 ~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 284 DVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred CcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 34445789999999999999999999999999999999999999999999999999999999999999976 88899999
Q ss_pred EEcccCCCCCC
Q 039503 89 NIASLGRPRPS 99 (259)
Q Consensus 89 ~~a~~~~~~~~ 99 (259)
..|..+.....
T Consensus 364 q~A~~g~~~~~ 374 (500)
T KOG0120|consen 364 QRAIVGASNAN 374 (500)
T ss_pred ehhhccchhcc
Confidence 98877655443
No 90
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.31 E-value=1.6e-06 Score=81.51 Aligned_cols=79 Identities=23% Similarity=0.313 Sum_probs=66.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEE-EEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEEEc
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILE-AVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCNIA 91 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~-v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~~a 91 (259)
.....|-+++||+.++|+||.+||+-.-.|.+ |.++.+. .+++.|-|||+|++.+.|++||......|..+-|+|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 35678999999999999999999998766655 3444554 477889999999999999999999888899999998765
Q ss_pred c
Q 039503 92 S 92 (259)
Q Consensus 92 ~ 92 (259)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 4
No 91
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.28 E-value=2.9e-06 Score=62.23 Aligned_cols=70 Identities=20% Similarity=0.340 Sum_probs=48.2
Q ss_pred cEEEEcCCCCCCCHHH----HHHHHhhCC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-CCCceEEEE
Q 039503 16 TKVFVGGLAWETPTEE----MRRYFEQFG-DILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-IDGRRANCN 89 (259)
Q Consensus 16 ~~lfVgnLp~~~te~~----L~~~F~~~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i~G~~l~V~ 89 (259)
+.|+|.|||.+.+-.. |++++..+| .|.+| ..+-|+|.|.+.+.|++|.+.|+++ +.|.+|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4699999999888765 566777886 45554 1467999999999999999999975 999999999
Q ss_pred EcccCC
Q 039503 90 IASLGR 95 (259)
Q Consensus 90 ~a~~~~ 95 (259)
+....+
T Consensus 73 ~~~~~r 78 (90)
T PF11608_consen 73 FSPKNR 78 (90)
T ss_dssp SS--S-
T ss_pred EcCCcc
Confidence 885443
No 92
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.27 E-value=1.2e-06 Score=79.05 Aligned_cols=81 Identities=23% Similarity=0.438 Sum_probs=72.6
Q ss_pred CccEEE-EcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCceEEEEEc
Q 039503 14 TFTKVF-VGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVIDGRRANCNIA 91 (259)
Q Consensus 14 ~~~~lf-VgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~~l~V~~a 91 (259)
...++| |++|++++++++|+.+|..+|.|..+++..+..++..+||++|+|.+......++.. . ..|.++.+.|...
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 455666 999999999999999999999999999999999999999999999999999999988 5 5699999999877
Q ss_pred ccCC
Q 039503 92 SLGR 95 (259)
Q Consensus 92 ~~~~ 95 (259)
....
T Consensus 262 ~~~~ 265 (285)
T KOG4210|consen 262 EPRP 265 (285)
T ss_pred CCCc
Confidence 6543
No 93
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.11 E-value=1.5e-05 Score=73.71 Aligned_cols=75 Identities=16% Similarity=0.284 Sum_probs=67.2
Q ss_pred ccEEEEcCCCC-CCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEcc
Q 039503 15 FTKVFVGGLAW-ETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIAS 92 (259)
Q Consensus 15 ~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~ 92 (259)
++.|.|.||.. .+|.+.|..+|.-||+|.+|+|+.++ +.-|+|.+.|...|+-|++.|++ .|.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 68899999875 58999999999999999999999875 46799999999999999999995 5999999999987
Q ss_pred cC
Q 039503 93 LG 94 (259)
Q Consensus 93 ~~ 94 (259)
-.
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 54
No 94
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.08 E-value=2.9e-06 Score=73.10 Aligned_cols=75 Identities=21% Similarity=0.395 Sum_probs=64.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
...+.+.|+|.+|..++.+.+|+++|..+|++....+ .++++||+|++.+++.+||+.+++ .|.+++|.|.
T Consensus 95 p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 95 PSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred cccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 3567899999999999999999999999999955544 367999999999999999999995 5999999996
Q ss_pred Eccc
Q 039503 90 IASL 93 (259)
Q Consensus 90 ~a~~ 93 (259)
+...
T Consensus 167 ~~~~ 170 (216)
T KOG0106|consen 167 KNSR 170 (216)
T ss_pred ccCc
Confidence 5543
No 95
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.02 E-value=2.6e-06 Score=81.09 Aligned_cols=87 Identities=24% Similarity=0.396 Sum_probs=76.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCNI 90 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~~ 90 (259)
.+.+.++||+--|...++.-+|.+||+.+|.|.+|.||.|+.++++||.++|+|.|.+.+..||......+.|..|.|..
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQL 254 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecc
Confidence 44567789998899999999999999999999999999999999999999999999999999997766779999999987
Q ss_pred cccCCCC
Q 039503 91 ASLGRPR 97 (259)
Q Consensus 91 a~~~~~~ 97 (259)
....+.+
T Consensus 255 sEaeknr 261 (549)
T KOG0147|consen 255 SEAEKNR 261 (549)
T ss_pred cHHHHHH
Confidence 6554433
No 96
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.96 E-value=1.1e-05 Score=62.16 Aligned_cols=69 Identities=25% Similarity=0.464 Sum_probs=44.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-C-----CCCCceEEEE
Q 039503 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-P-----VIDGRRANCN 89 (259)
Q Consensus 16 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~-----~i~G~~l~V~ 89 (259)
+.|.|.++...++.++|+++|+.||.|..|.+... ...|+|.|.+.++|++|++.+. . .|.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 46888899999999999999999999999988654 3379999999999999888653 2 3777777766
Q ss_pred E
Q 039503 90 I 90 (259)
Q Consensus 90 ~ 90 (259)
+
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 5
No 97
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.92 E-value=8.6e-06 Score=69.94 Aligned_cols=64 Identities=14% Similarity=0.251 Sum_probs=52.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP 79 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~ 79 (259)
.....+|||.||..+++|++|+.+|+.|-....++|... ..-..+||+|++.+.|..|+..+.+
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~----~g~~vaf~~~~~~~~at~am~~lqg 270 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR----GGMPVAFADFEEIEQATDAMNHLQG 270 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC----CCcceEeecHHHHHHHHHHHHHhhc
Confidence 334679999999999999999999999987776666421 1246899999999999999988774
No 98
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.84 E-value=5.3e-05 Score=51.10 Aligned_cols=52 Identities=21% Similarity=0.433 Sum_probs=41.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 039503 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRAC 74 (259)
Q Consensus 16 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al 74 (259)
+.|-|.+.+.+..++ |.++|..||+|+++.+. ....+.+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 467788888665544 55589999999998885 23568999999999999986
No 99
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.81 E-value=2.6e-05 Score=72.46 Aligned_cols=70 Identities=20% Similarity=0.301 Sum_probs=58.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeec---CCCC---C-------cccEEEEEeCCHHHHHHHHhCC
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISD---KNTG---K-------SKGYGFVTFRDPESARRACDNP 77 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d---~~tg---~-------~kG~aFV~F~~~~~A~~Al~~~ 77 (259)
.+...++|.+-||+.+-.-+.|.++|+.+|.|+.|+|+.- ..+. . .+-||||+|++.+.|.+|.+.+
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 4458899999999999999999999999999999999764 2111 1 2568999999999999999999
Q ss_pred CCC
Q 039503 78 NPV 80 (259)
Q Consensus 78 ~~~ 80 (259)
+.+
T Consensus 307 ~~e 309 (484)
T KOG1855|consen 307 NPE 309 (484)
T ss_pred chh
Confidence 743
No 100
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.73 E-value=2.2e-05 Score=72.61 Aligned_cols=73 Identities=23% Similarity=0.383 Sum_probs=61.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC---CCCCCceEEEEE
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN---PVIDGRRANCNI 90 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~---~~i~G~~l~V~~ 90 (259)
..+.|.++||+|+++|+||.+++..||.|+.+.+++. +.-|||+|.|+++|...+.... ..+.|+.|.|.+
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG------knQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~ 100 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG------KNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQY 100 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeecc------chhhhhhhcchhhhhheeecccccCccccCcceeehh
Confidence 5788999999999999999999999999999988764 3379999999999887555543 248899999887
Q ss_pred cc
Q 039503 91 AS 92 (259)
Q Consensus 91 a~ 92 (259)
+.
T Consensus 101 sn 102 (492)
T KOG1190|consen 101 SN 102 (492)
T ss_pred hh
Confidence 54
No 101
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.73 E-value=9.4e-05 Score=72.44 Aligned_cols=80 Identities=19% Similarity=0.305 Sum_probs=66.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
.....+.|-|.|++++++-+||.+||..|-.+-.-.+++-.+.|+..|-|.|.|++.++|.+|...+++ .|..++|.+.
T Consensus 863 ~~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 863 KSPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CCCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 333456889999999999999999999998765544444445688999999999999999999999995 5999998887
Q ss_pred E
Q 039503 90 I 90 (259)
Q Consensus 90 ~ 90 (259)
+
T Consensus 943 i 943 (944)
T KOG4307|consen 943 I 943 (944)
T ss_pred e
Confidence 5
No 102
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.00012 Score=69.50 Aligned_cols=67 Identities=30% Similarity=0.527 Sum_probs=50.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecC-CCC--Cccc---EEEEEeCCHHHHHHHHhCCC
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDK-NTG--KSKG---YGFVTFRDPESARRACDNPN 78 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~tg--~~kG---~aFV~F~~~~~A~~Al~~~~ 78 (259)
...-.++||||+|+++++|+.|...|..||.|. |++.... ..+ -.+| |+|+.|+++.++.+.|....
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 344578999999999999999999999999754 4444211 111 1356 99999999998888776553
No 103
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.62 E-value=0.00031 Score=60.43 Aligned_cols=76 Identities=22% Similarity=0.299 Sum_probs=63.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCC-CceEEEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VID-GRRANCN 89 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~-G~~l~V~ 89 (259)
...+..||+-||+.+++.+.|..+|++|...++|+++..+ ++.|||+|.+...+..|...+.. .|. ...+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 4467889999999999999999999999999999998653 68999999999998888888874 343 6667766
Q ss_pred Ecc
Q 039503 90 IAS 92 (259)
Q Consensus 90 ~a~ 92 (259)
+++
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 654
No 104
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00027 Score=67.90 Aligned_cols=80 Identities=21% Similarity=0.294 Sum_probs=62.3
Q ss_pred CCCCccEEEEcCCCCCCC------HHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC--CC
Q 039503 11 GDTTFTKVFVGGLAWETP------TEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV--ID 82 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~t------e~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~--i~ 82 (259)
++.-...|+|.|+|.--. ...|.++|+++|+|..+.+..+..+| .+||.|++|.+..+|+.|++.+|+. ..
T Consensus 54 ~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 54 AEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred cCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecc
Confidence 334467789999985322 22367789999999999998887655 8999999999999999999999953 45
Q ss_pred CceEEEEEc
Q 039503 83 GRRANCNIA 91 (259)
Q Consensus 83 G~~l~V~~a 91 (259)
.+.+.|.+-
T Consensus 133 nHtf~v~~f 141 (698)
T KOG2314|consen 133 NHTFFVRLF 141 (698)
T ss_pred cceEEeehh
Confidence 677777643
No 105
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.50 E-value=0.00021 Score=64.86 Aligned_cols=80 Identities=24% Similarity=0.383 Sum_probs=59.9
Q ss_pred CccEEEEcCCCCCCCHHH----H--HHHHhhCCCEEEEEEeecCCCCCc-ccE--EEEEeCCHHHHHHHHhCCCCC-CCC
Q 039503 14 TFTKVFVGGLAWETPTEE----M--RRYFEQFGDILEAVIISDKNTGKS-KGY--GFVTFRDPESARRACDNPNPV-IDG 83 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~----L--~~~F~~~G~I~~v~i~~d~~tg~~-kG~--aFV~F~~~~~A~~Al~~~~~~-i~G 83 (259)
...-+||-+|+..+..|+ | .++|.+||.|.+|.|.+....-.+ .+. .+|+|.+.++|.+||...++. ++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 345688999988776665 3 468999999999987654211111 222 399999999999999999964 999
Q ss_pred ceEEEEEccc
Q 039503 84 RRANCNIASL 93 (259)
Q Consensus 84 ~~l~V~~a~~ 93 (259)
|.|++.+...
T Consensus 193 r~lkatYGTT 202 (480)
T COG5175 193 RVLKATYGTT 202 (480)
T ss_pred ceEeeecCch
Confidence 9999987543
No 106
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.00041 Score=66.00 Aligned_cols=64 Identities=33% Similarity=0.421 Sum_probs=58.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHh-hCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCC
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFE-QFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP 77 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~ 77 (259)
..+|||||+|+.-++.++|..+|+ -||.|+-+-|-.|.+-+-.||-|-|+|.+..+-.+||..-
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhh
Confidence 468999999999999999999998 6999999999888777888999999999999999999874
No 107
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.45 E-value=0.0008 Score=46.78 Aligned_cols=57 Identities=26% Similarity=0.391 Sum_probs=47.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhC---CCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCC
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQF---GDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP 77 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~---G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~ 77 (259)
....+|+|.+|+ +++.++|+.+|..| ....+|.++.|. -|-|.|.+.+.|.+||..|
T Consensus 3 ~rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 3 IRPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 346789999996 68889999999998 235788999875 3889999999999999865
No 108
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.36 E-value=0.002 Score=54.13 Aligned_cols=71 Identities=21% Similarity=0.293 Sum_probs=59.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-C--CCCceEEEEEc
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-V--IDGRRANCNIA 91 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~--i~G~~l~V~~a 91 (259)
..+|.|.+|+.+-++.|||++..+-|+|+...+.+| |.+.|+|...|+.+-||++|+. + -.|....+.+-
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~ 187 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVR 187 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEec
Confidence 467999999999999999999999999999998876 4799999999999999999873 3 35655555554
Q ss_pred c
Q 039503 92 S 92 (259)
Q Consensus 92 ~ 92 (259)
.
T Consensus 188 ~ 188 (241)
T KOG0105|consen 188 G 188 (241)
T ss_pred c
Confidence 3
No 109
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.35 E-value=0.0012 Score=60.76 Aligned_cols=78 Identities=19% Similarity=0.303 Sum_probs=67.4
Q ss_pred CCCCccEEEEcCCCCC-CCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-CCCceEEE
Q 039503 11 GDTTFTKVFVGGLAWE-TPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-IDGRRANC 88 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i~G~~l~V 88 (259)
+....+.+.|-+|... ++-+.|-.+|-.||.|++|++++.+ .|-|.|++.|..++++||..||.. +-|.+|.|
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 3446788999999854 6778899999999999999999764 578999999999999999999964 88999999
Q ss_pred EEccc
Q 039503 89 NIASL 93 (259)
Q Consensus 89 ~~a~~ 93 (259)
.+++.
T Consensus 358 ~~SkQ 362 (494)
T KOG1456|consen 358 CVSKQ 362 (494)
T ss_pred eeccc
Confidence 88864
No 110
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.34 E-value=0.00099 Score=60.65 Aligned_cols=76 Identities=22% Similarity=0.375 Sum_probs=59.7
Q ss_pred CCccEEEEcCCC----CCCC-------HHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-
Q 039503 13 TTFTKVFVGGLA----WETP-------TEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV- 80 (259)
Q Consensus 13 ~~~~~lfVgnLp----~~~t-------e~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~- 80 (259)
...++|.|.||= .+.+ +++|++-.++||.|.+|.|.- ....|.+-|.|.+.++|..||+.|++.
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 356788999871 2333 355667789999999997753 235799999999999999999999965
Q ss_pred CCCceEEEEEcc
Q 039503 81 IDGRRANCNIAS 92 (259)
Q Consensus 81 i~G~~l~V~~a~ 92 (259)
|+||.|..++-.
T Consensus 339 fdgRql~A~i~D 350 (382)
T KOG1548|consen 339 FDGRQLTASIWD 350 (382)
T ss_pred ecceEEEEEEeC
Confidence 999999887654
No 111
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.17 E-value=0.015 Score=53.80 Aligned_cols=77 Identities=21% Similarity=0.187 Sum_probs=60.5
Q ss_pred ccEEEEcCCC--CCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CC-CC-ceEEEE
Q 039503 15 FTKVFVGGLA--WETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VI-DG-RRANCN 89 (259)
Q Consensus 15 ~~~lfVgnLp--~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i-~G-~~l~V~ 89 (259)
++.|.+.-|. .-||.|.|..+....|+|.+|.|++. + ---|.|||++.+.|++|.+.||+ .| .| ..|+|+
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--n---gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIe 194 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--N---GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIE 194 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--c---ceeeEEeechhHHHHHHHhhcccccccccceeEEEE
Confidence 3444444443 56899999999999999999998864 2 34699999999999999999995 33 34 689999
Q ss_pred EcccCCC
Q 039503 90 IASLGRP 96 (259)
Q Consensus 90 ~a~~~~~ 96 (259)
+|++.+-
T Consensus 195 yAkP~rl 201 (494)
T KOG1456|consen 195 YAKPTRL 201 (494)
T ss_pred ecCccee
Confidence 9987653
No 112
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.15 E-value=0.00034 Score=61.30 Aligned_cols=72 Identities=18% Similarity=0.358 Sum_probs=59.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCC--------CCcc----cEEEEEeCCHHHHHHHHhCCCCC-
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNT--------GKSK----GYGFVTFRDPESARRACDNPNPV- 80 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t--------g~~k----G~aFV~F~~~~~A~~Al~~~~~~- 80 (259)
..-.||+++||..++-..|+++|+.||+|-+|.|-....+ |.++ --|.|+|.+...|.++.+.||+.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3467999999999999999999999999999988765443 2222 34679999999999999999965
Q ss_pred CCCce
Q 039503 81 IDGRR 85 (259)
Q Consensus 81 i~G~~ 85 (259)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 88865
No 113
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.96 E-value=0.0031 Score=48.15 Aligned_cols=78 Identities=23% Similarity=0.344 Sum_probs=51.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEE-EeecC------CCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCc-e
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAV-IISDK------NTGKSKGYGFVTFRDPESARRACDNPNPVIDGR-R 85 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~-i~~d~------~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~-~ 85 (259)
..+-|.|-+.+.+ ....|.++|++||+|++.. +.++. ..-....+-.|+|.+..+|.+||.+....|+|. .
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 3456778888877 5567888999999998875 11110 001235789999999999999999977778774 4
Q ss_pred EEEEEcc
Q 039503 86 ANCNIAS 92 (259)
Q Consensus 86 l~V~~a~ 92 (259)
+-|...+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 5566653
No 114
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.95 E-value=0.0021 Score=61.82 Aligned_cols=61 Identities=21% Similarity=0.274 Sum_probs=48.5
Q ss_pred HHHHHhhCCCEEEEEEeecCCCC---CcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEcc
Q 039503 32 MRRYFEQFGDILEAVIISDKNTG---KSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIAS 92 (259)
Q Consensus 32 L~~~F~~~G~I~~v~i~~d~~tg---~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~ 92 (259)
|+..+.+||.|..|.|.++-... -..|..||+|.+.+++++|.+.|++ +|.++.|.+.+-.
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 44456789999999998762222 2357789999999999999999996 5999998887754
No 115
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.88 E-value=0.0012 Score=61.00 Aligned_cols=78 Identities=22% Similarity=0.362 Sum_probs=63.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCCC-EEE--EEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-CCCceEEEEE
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFGD-ILE--AVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-IDGRRANCNI 90 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G~-I~~--v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i~G~~l~V~~ 90 (259)
...|-+++||.+.+.|||..||..|-. |.. |.++.+. .|+..|-|||+|.+.++|..|..+.+++ .+.+.|+|.-
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 457889999999999999999998874 333 5666554 4888899999999999999999888754 6688888876
Q ss_pred ccc
Q 039503 91 ASL 93 (259)
Q Consensus 91 a~~ 93 (259)
++.
T Consensus 359 ~S~ 361 (508)
T KOG1365|consen 359 CSV 361 (508)
T ss_pred ccH
Confidence 654
No 116
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.84 E-value=0.00059 Score=68.32 Aligned_cols=78 Identities=15% Similarity=0.273 Sum_probs=69.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEccc
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIASL 93 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~~ 93 (259)
..+|||.|+++..|.++|+.+|.++|.+++++++..+ .|+.+|.+||.|.+..++.+++...+. .+..+.+.|.++.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 6789999999999999999999999999999988776 489999999999999999999999885 47777778877655
No 117
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.80 E-value=0.00049 Score=60.29 Aligned_cols=60 Identities=23% Similarity=0.387 Sum_probs=47.2
Q ss_pred HHHHHHh-hCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEc
Q 039503 31 EMRRYFE-QFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIA 91 (259)
Q Consensus 31 ~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a 91 (259)
+|...|+ +||+|++++|..+. ...-+|-++|.|..+++|++|++.||. .|.|+.|.+++.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 3444444 89999999765442 233478899999999999999999995 599999998875
No 118
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.77 E-value=0.0071 Score=48.85 Aligned_cols=80 Identities=19% Similarity=0.315 Sum_probs=62.7
Q ss_pred CCCCCCCCCccEEEEcCCCCCCC-HHHHH---HHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCC
Q 039503 6 YRSQFGDTTFTKVFVGGLAWETP-TEEMR---RYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVI 81 (259)
Q Consensus 6 ~~~~~~~~~~~~lfVgnLp~~~t-e~~L~---~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i 81 (259)
++....|....+|.|+=|..++. .+||+ ..++.||.|.+|.+.- +--|.|.|+|..+|-+|+..+....
T Consensus 77 wkk~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s~~ 149 (166)
T PF15023_consen 77 WKKNTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQSRA 149 (166)
T ss_pred hcccCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcCCC
Confidence 34445688899999987776653 24444 4567899999997742 3459999999999999999999888
Q ss_pred CCceEEEEEcc
Q 039503 82 DGRRANCNIAS 92 (259)
Q Consensus 82 ~G~~l~V~~a~ 92 (259)
-|..+.|++-.
T Consensus 150 pgtm~qCsWqq 160 (166)
T PF15023_consen 150 PGTMFQCSWQQ 160 (166)
T ss_pred CCceEEeeccc
Confidence 99999998754
No 119
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.74 E-value=0.0046 Score=50.18 Aligned_cols=56 Identities=27% Similarity=0.420 Sum_probs=44.6
Q ss_pred HHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEEEcccC
Q 039503 31 EMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCNIASLG 94 (259)
Q Consensus 31 ~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~~a~~~ 94 (259)
+|.+.|..||++.-++++.+ .-+|+|.+-+.|.+|+......|+|+.|+|++..+.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCcc
Confidence 56778889999998888754 479999999999999998877899999999988754
No 120
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.73 E-value=0.00088 Score=62.50 Aligned_cols=77 Identities=18% Similarity=0.342 Sum_probs=59.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCC-EEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC--CCCCceEEEEEcc
Q 039503 16 TKVFVGGLAWETPTEEMRRYFEQFGD-ILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP--VIDGRRANCNIAS 92 (259)
Q Consensus 16 ~~lfVgnLp~~~te~~L~~~F~~~G~-I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~--~i~G~~l~V~~a~ 92 (259)
++|||+||...++-+||+.+|...-. ...-.++ ..||+||.+.+...|.+|++.+++ ++.|+++.|+..-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 57999999999999999999965411 1111122 258999999999999999999995 4899999999887
Q ss_pred cCCCCCC
Q 039503 93 LGRPRPS 99 (259)
Q Consensus 93 ~~~~~~~ 99 (259)
.++.+.+
T Consensus 75 ~kkqrsr 81 (584)
T KOG2193|consen 75 PKKQRSR 81 (584)
T ss_pred hHHHHhh
Confidence 6655443
No 121
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.67 E-value=0.0022 Score=59.33 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=61.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCC---CCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEE
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKN---TGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCN 89 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~---tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~ 89 (259)
....|-|.||..+++.+++..+|.-.|+|.++.|..+.. -......|||.|.|...+..|-...|.+|-++-|.|.
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~ 84 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVR 84 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEE
Confidence 345899999999999999999999999999998865321 2234578999999999999998888876656555554
No 122
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.65 E-value=0.0011 Score=61.15 Aligned_cols=73 Identities=21% Similarity=0.292 Sum_probs=55.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhC----CCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEE
Q 039503 16 TKVFVGGLAWETPTEEMRRYFEQF----GDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCN 89 (259)
Q Consensus 16 ~~lfVgnLp~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~ 89 (259)
-.|-+++||+++++.|+.+||... |.++.|-+++. .+|+..|-|||.|..+++|..||.+....|+-|.|++.
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElF 238 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELF 238 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 356678999999999999999632 23445544443 35888899999999999999999987666766666553
No 123
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.63 E-value=0.0029 Score=60.92 Aligned_cols=76 Identities=14% Similarity=0.236 Sum_probs=60.7
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHh--hCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC---CCCCCc
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFE--QFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN---PVIDGR 84 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~--~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~---~~i~G~ 84 (259)
......|.|+|+.|++.+.+|+||.+|+ .|-.+.+|.+-.+. -=||+|++..||.+|.+.|. ++|.|+
T Consensus 170 rp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgK 242 (684)
T KOG2591|consen 170 RPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGK 242 (684)
T ss_pred ccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCc
Confidence 3455678899999999999999999995 47788888775432 25999999999999998876 358999
Q ss_pred eEEEEEcc
Q 039503 85 RANCNIAS 92 (259)
Q Consensus 85 ~l~V~~a~ 92 (259)
.|..++..
T Consensus 243 pImARIKa 250 (684)
T KOG2591|consen 243 PIMARIKA 250 (684)
T ss_pred chhhhhhh
Confidence 88665543
No 124
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.41 E-value=0.01 Score=53.16 Aligned_cols=61 Identities=23% Similarity=0.288 Sum_probs=48.2
Q ss_pred HHHHHHHHhhCCCEEEEEEeecCCCCCcc-cEEEEEeCCHHHHHHHHhCCCCC-CCCceEEEE
Q 039503 29 TEEMRRYFEQFGDILEAVIISDKNTGKSK-GYGFVTFRDPESARRACDNPNPV-IDGRRANCN 89 (259)
Q Consensus 29 e~~L~~~F~~~G~I~~v~i~~d~~tg~~k-G~aFV~F~~~~~A~~Al~~~~~~-i~G~~l~V~ 89 (259)
|+++++..++||.|.+|.|..+...-... ---||+|+..++|.+|+..||+. |+|+.+..-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~ 362 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSAC 362 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehe
Confidence 45688899999999999888765333322 34799999999999999999965 888877543
No 125
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.39 E-value=0.00015 Score=72.42 Aligned_cols=70 Identities=27% Similarity=0.404 Sum_probs=60.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCC
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDG 83 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G 83 (259)
+..++||.||+..+.+++|+..|..+|.|..+.|.-.+.+++.||.|+|+|.+.+++.+||...+..+.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 4678999999999999999999999999888877655667889999999999999999999988755444
No 126
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.37 E-value=0.0036 Score=54.96 Aligned_cols=62 Identities=27% Similarity=0.417 Sum_probs=55.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC
Q 039503 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN 78 (259)
Q Consensus 16 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~ 78 (259)
..|+|.||..-++-|.|++.|+.||.|....++.|. .++..+-++|.|...-.+.+|++.+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhc
Confidence 789999999999999999999999999998777764 47778889999999999999998875
No 127
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.35 E-value=0.0041 Score=61.31 Aligned_cols=79 Identities=16% Similarity=0.095 Sum_probs=63.4
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEE-EEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILE-AVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRAN 87 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~-v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~ 87 (259)
+...-...|||..|+..+++.++.++|.+.-.|++ |.|.... +++.++.|||+|..++++.+|+....+ .++.+.|+
T Consensus 429 ~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~ir 507 (944)
T KOG4307|consen 429 FPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIR 507 (944)
T ss_pred CCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEE
Confidence 33445678999999999999999999998888887 6655544 577889999999998888888877764 47777777
Q ss_pred EE
Q 039503 88 CN 89 (259)
Q Consensus 88 V~ 89 (259)
|.
T Consensus 508 v~ 509 (944)
T KOG4307|consen 508 VD 509 (944)
T ss_pred ee
Confidence 74
No 128
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.17 E-value=0.003 Score=61.20 Aligned_cols=76 Identities=13% Similarity=0.182 Sum_probs=61.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHh-hCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC----CCCceE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFE-QFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV----IDGRRA 86 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~----i~G~~l 86 (259)
....+.|+|.||-.-+|..+|+.++. .+|.|++. || | +-|..|||.|.+.++|...+..||++ -+.+.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 34578899999999999999999998 56777776 33 2 24778999999999999999999864 467888
Q ss_pred EEEEccc
Q 039503 87 NCNIASL 93 (259)
Q Consensus 87 ~V~~a~~ 93 (259)
.|.+...
T Consensus 515 ~adf~~~ 521 (718)
T KOG2416|consen 515 IADFVRA 521 (718)
T ss_pred Eeeecch
Confidence 8888754
No 129
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.12 E-value=0.0062 Score=61.56 Aligned_cols=78 Identities=26% Similarity=0.435 Sum_probs=66.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-CCC--ceEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-IDG--RRAN 87 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i~G--~~l~ 87 (259)
..+..+.+||++|..++....|.+.|..||.|..|.+-. ..-|++|.+++...+..|++.+.+. |++ ++|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 345678899999999999999999999999999987733 3569999999999999999999865 654 7799
Q ss_pred EEEcccC
Q 039503 88 CNIASLG 94 (259)
Q Consensus 88 V~~a~~~ 94 (259)
|.++..-
T Consensus 525 vdla~~~ 531 (975)
T KOG0112|consen 525 VDLASPP 531 (975)
T ss_pred cccccCC
Confidence 9988753
No 130
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.98 E-value=0.015 Score=42.76 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=41.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN 78 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~ 78 (259)
.+.++|. .|.++...||.++|+.||.|. |.++.|. -|||...+++.|..++..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 4456665 999999999999999999875 5566553 59999999999998887765
No 131
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.36 E-value=0.0039 Score=62.94 Aligned_cols=80 Identities=18% Similarity=0.259 Sum_probs=61.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
+...+.+||+|||...+++.+|+..|..+|.|.+|.|-+-+. +.-..|+||.|.+.+.+-+|+..+.. .|....+++.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 445688999999999999999999999999999998865432 33456899999999999888888774 3433344444
Q ss_pred Ec
Q 039503 90 IA 91 (259)
Q Consensus 90 ~a 91 (259)
+.
T Consensus 447 lG 448 (975)
T KOG0112|consen 447 LG 448 (975)
T ss_pred cc
Confidence 33
No 132
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.06 E-value=0.032 Score=53.84 Aligned_cols=80 Identities=16% Similarity=0.173 Sum_probs=53.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhh-CCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC----CCCce-EE
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQ-FGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV----IDGRR-AN 87 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~----i~G~~-l~ 87 (259)
..+++-|.|++...|...|.+.-++ .|.-..+.+..|-.+..+.|||||.|.+.+++.++.++.|++ |++++ +.
T Consensus 387 ~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~ 466 (549)
T KOG4660|consen 387 PRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIAS 466 (549)
T ss_pred chhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeee
Confidence 3445555555555554444444322 455566777777777778999999999999999999998842 66544 35
Q ss_pred EEEccc
Q 039503 88 CNIASL 93 (259)
Q Consensus 88 V~~a~~ 93 (259)
|.+|+-
T Consensus 467 itYArI 472 (549)
T KOG4660|consen 467 ITYARI 472 (549)
T ss_pred eehhhh
Confidence 666543
No 133
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.89 E-value=0.017 Score=54.78 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=58.6
Q ss_pred CCccEEEEcCCCCCC-CHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEEEc
Q 039503 13 TTFTKVFVGGLAWET-PTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCNIA 91 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~-te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~~a 91 (259)
.+.+.|-+.-++... +.++|..+|.+||+|..|.|-.. --.|.|+|.+..+|-+|.....-.|+++.|+|.|.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWH 443 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEEEEe
Confidence 345555555555554 56899999999999999987433 34699999999998777766666799999999998
Q ss_pred ccC
Q 039503 92 SLG 94 (259)
Q Consensus 92 ~~~ 94 (259)
+..
T Consensus 444 nps 446 (526)
T KOG2135|consen 444 NPS 446 (526)
T ss_pred cCC
Confidence 763
No 134
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.84 E-value=0.11 Score=37.17 Aligned_cols=66 Identities=20% Similarity=0.291 Sum_probs=39.0
Q ss_pred EEEEc-CCCCCCCHHHHHHHHhhCC-----CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 17 KVFVG-GLAWETPTEEMRRYFEQFG-----DILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 17 ~lfVg-nLp~~~te~~L~~~F~~~G-----~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
+|||. +--..++..+|..++...+ +|-+|+|. ..|+||+-.. +.++++++.+++ .+.|++|+|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 45553 2235688899999887764 45567764 3489998864 578888998884 5999999998
Q ss_pred Ec
Q 039503 90 IA 91 (259)
Q Consensus 90 ~a 91 (259)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 75
No 135
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=94.76 E-value=0.018 Score=52.10 Aligned_cols=81 Identities=21% Similarity=0.216 Sum_probs=68.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEcc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIAS 92 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~ 92 (259)
..+++||+++.+.+.+.++..+|.+.|.+..+.+........+++++.|.|...+.+..||+.... .+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 378999999999999999999999999988888777677788999999999999999999998774 5666666666555
Q ss_pred cC
Q 039503 93 LG 94 (259)
Q Consensus 93 ~~ 94 (259)
..
T Consensus 167 ~~ 168 (285)
T KOG4210|consen 167 RR 168 (285)
T ss_pred cc
Confidence 43
No 136
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.72 E-value=0.014 Score=53.15 Aligned_cols=79 Identities=25% Similarity=0.440 Sum_probs=56.8
Q ss_pred CccEEEEcCCCCCCCHHH-HH--HHHhhCCCEEEEEEeecCC--CCC-cccEEEEEeCCHHHHHHHHhCCCCC-CCCceE
Q 039503 14 TFTKVFVGGLAWETPTEE-MR--RYFEQFGDILEAVIISDKN--TGK-SKGYGFVTFRDPESARRACDNPNPV-IDGRRA 86 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~-L~--~~F~~~G~I~~v~i~~d~~--tg~-~kG~aFV~F~~~~~A~~Al~~~~~~-i~G~~l 86 (259)
....+||-+|+....+++ |+ +.|.+||.|.+|.+..+.. .+. .-.-++|+|+..++|.+||...+++ ++|+.|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 446678888887765554 43 3789999999998877652 111 1233799999999999999999965 777776
Q ss_pred EEEEcc
Q 039503 87 NCNIAS 92 (259)
Q Consensus 87 ~V~~a~ 92 (259)
++.+..
T Consensus 156 ka~~gt 161 (327)
T KOG2068|consen 156 KASLGT 161 (327)
T ss_pred HHhhCC
Confidence 665543
No 137
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.49 E-value=0.017 Score=56.72 Aligned_cols=69 Identities=20% Similarity=0.225 Sum_probs=60.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIA 91 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a 91 (259)
...+|||+||...+..+-++.++..+|.|..++.+. |+|.+|.......+|+..+.. .+++.+|.++..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 456899999999999999999999999998876542 999999999999999999884 598988877653
No 138
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.06 E-value=0.16 Score=42.97 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=43.7
Q ss_pred CHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC--CC-CCCceEEEEEccc
Q 039503 28 PTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN--PV-IDGRRANCNIASL 93 (259)
Q Consensus 28 te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~--~~-i~G~~l~V~~a~~ 93 (259)
..+.|+++|..++.+..+.+++. -+-..|.|.+.++|.+|...++ +. |.|..|+|-++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 45789999999999988877754 2358899999999999999998 55 9999999988843
No 139
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.79 E-value=0.96 Score=35.08 Aligned_cols=63 Identities=25% Similarity=0.259 Sum_probs=47.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC
Q 039503 16 TKVFVGGLAWETPTEEMRRYFEQFG-DILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV 80 (259)
Q Consensus 16 ~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~ 80 (259)
..+.+...+..++.++|..+.+.+- .|..++|++|. ..++-.++++|++.++|+.-.+..|++
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk 77 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGK 77 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCC
Confidence 3444555667777788877666654 57788999874 236778899999999999999999853
No 140
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.08 E-value=0.78 Score=41.53 Aligned_cols=68 Identities=16% Similarity=0.268 Sum_probs=48.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCce-EEEEEcc
Q 039503 18 VFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRR-ANCNIAS 92 (259)
Q Consensus 18 lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~-l~V~~a~ 92 (259)
|-|-+++.. ....|..+|++||+|++.... .+-.+-.|.|.++.+|+|||.+...+|+|.. |-|+-+.
T Consensus 200 VTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 200 VTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred EEEeccCcc-chhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecC
Confidence 444456543 345677899999999887543 3356899999999999999998777777754 3455433
No 141
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.06 E-value=0.15 Score=42.76 Aligned_cols=82 Identities=20% Similarity=0.150 Sum_probs=47.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhh-CCCE---EEEEEeec-CCCCC-cccEEEEEeCCHHHHHHHHhCCCC-C-CCC-
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQ-FGDI---LEAVIISD-KNTGK-SKGYGFVTFRDPESARRACDNPNP-V-IDG- 83 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~-~G~I---~~v~i~~d-~~tg~-~kG~aFV~F~~~~~A~~Al~~~~~-~-i~G- 83 (259)
....+|.|++||.++||+++.+.++. +++. ..+.-... ..... .-.-|+|.|.+.+++...+..+++ . ++.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 45679999999999999999886665 5554 22221111 11111 235699999999999999998885 3 322
Q ss_pred ---ceEEEEEcccC
Q 039503 84 ---RRANCNIASLG 94 (259)
Q Consensus 84 ---~~l~V~~a~~~ 94 (259)
.+..|++|--.
T Consensus 85 g~~~~~~VE~Apyq 98 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQ 98 (176)
T ss_dssp S-EEEEEEEE-SS-
T ss_pred CCCcceeEEEcchh
Confidence 34567777553
No 142
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.30 E-value=0.13 Score=52.08 Aligned_cols=72 Identities=19% Similarity=0.210 Sum_probs=60.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-C--CCCceEEEEEccc
Q 039503 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-V--IDGRRANCNIASL 93 (259)
Q Consensus 17 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~--i~G~~l~V~~a~~ 93 (259)
+.++.|..-..+...|..+|++||.|.+++.+++ -..+.|+|.+.+.|-.|++.+.+ + +.|-..+|.+|+.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 4455666677888899999999999999988876 35799999999999999999984 2 6788899999876
Q ss_pred C
Q 039503 94 G 94 (259)
Q Consensus 94 ~ 94 (259)
-
T Consensus 374 ~ 374 (1007)
T KOG4574|consen 374 L 374 (1007)
T ss_pred c
Confidence 4
No 143
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=89.96 E-value=0.82 Score=41.13 Aligned_cols=58 Identities=10% Similarity=0.147 Sum_probs=41.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCCCE-EEEEEeecCCCCCcccEEEEEeCCH-------HHHHHHHhCCC
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFGDI-LEAVIISDKNTGKSKGYGFVTFRDP-------ESARRACDNPN 78 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G~I-~~v~i~~d~~tg~~kG~aFV~F~~~-------~~A~~Al~~~~ 78 (259)
.+-|+|+||+.++.-.||+..+.+.+.+ .++.|. .+.+-||++|.+. +++.+++..++
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 4569999999999999999999988753 334442 2467799999765 44555555443
No 144
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=88.27 E-value=1.4 Score=31.11 Aligned_cols=60 Identities=17% Similarity=0.216 Sum_probs=43.4
Q ss_pred HHHHHHHhhCC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCceEEEEEcc
Q 039503 30 EEMRRYFEQFG-DILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVIDGRRANCNIAS 92 (259)
Q Consensus 30 ~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~~l~V~~a~ 92 (259)
++|++.|...| .|.+|.-+..+.+++.-..-||+++...+ ..+.++ ..|++.+|.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecCC
Confidence 57888888888 68888877777666667888998876544 233455 45889888888654
No 145
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=88.20 E-value=1 Score=31.89 Aligned_cols=60 Identities=12% Similarity=0.195 Sum_probs=43.6
Q ss_pred HHHHHHHhhCC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCceEEEEEcc
Q 039503 30 EEMRRYFEQFG-DILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVIDGRRANCNIAS 92 (259)
Q Consensus 30 ~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~~l~V~~a~ 92 (259)
++|++.|.++| .++.+..+..++++..-..-||+.....+... .++ ..|+++++.|+-..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46888898888 68888888887777667888998876543222 344 45899998888543
No 146
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=87.12 E-value=2.8 Score=29.43 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-CCCceEEE
Q 039503 26 ETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-IDGRRANC 88 (259)
Q Consensus 26 ~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i~G~~l~V 88 (259)
.++-++|+..+.+|.- .+ |+.|+ .| =||.|.+.++|+++.+..++. +.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 6788999999999973 33 33443 22 489999999999999998854 55555543
No 147
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.87 E-value=1.9 Score=40.53 Aligned_cols=61 Identities=15% Similarity=0.143 Sum_probs=50.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCC-EEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCC
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGD-ILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVI 81 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~-I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i 81 (259)
-.+.|=|-+++.....+||...|+.|+. -.+|+|+.|. .+|..|.+...|..||..-+..+
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~~l 451 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHDWL 451 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCceE
Confidence 3567889999999999999999999975 4678887764 69999999999999988755433
No 148
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.91 E-value=5.6 Score=38.04 Aligned_cols=63 Identities=17% Similarity=0.232 Sum_probs=53.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhC-CCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQF-GDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP 79 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~ 79 (259)
.+.|.|=.+|..++-.||..|...| -.|.+++|++|.. -++=..+|+|.+.++|....+.+|+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNG 137 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNG 137 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCC
Confidence 7788888899999999999998765 4689999999642 2355679999999999999999985
No 149
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=81.67 E-value=15 Score=37.04 Aligned_cols=71 Identities=8% Similarity=0.015 Sum_probs=48.9
Q ss_pred ccEEEEc-CCCCCCCHHHHHHHHhhCCCEE-----EEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEE
Q 039503 15 FTKVFVG-GLAWETPTEEMRRYFEQFGDIL-----EAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRAN 87 (259)
Q Consensus 15 ~~~lfVg-nLp~~~te~~L~~~F~~~G~I~-----~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~ 87 (259)
..++||. +-...++-.+|..++..-+.|. .|+|. ..|.||+... +.+.+.++.++. .|.|++|.
T Consensus 486 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--------~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~ 556 (629)
T PRK11634 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF--------ASHSTIELPK-GMPGEVLQHFTRTRILNKPMN 556 (629)
T ss_pred CEEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe--------CCceEEEcCh-hhHHHHHHHhccccccCCceE
Confidence 3456554 2235688888888887655444 34443 3489999864 557888888874 59999999
Q ss_pred EEEcccC
Q 039503 88 CNIASLG 94 (259)
Q Consensus 88 V~~a~~~ 94 (259)
|+.++..
T Consensus 557 ~~~~~~~ 563 (629)
T PRK11634 557 MQLLGDA 563 (629)
T ss_pred EEECCCC
Confidence 9988533
No 150
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=79.15 E-value=0.41 Score=41.53 Aligned_cols=68 Identities=25% Similarity=0.308 Sum_probs=55.1
Q ss_pred CCCCCccEEEEcC----CCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC
Q 039503 10 FGDTTFTKVFVGG----LAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN 78 (259)
Q Consensus 10 ~~~~~~~~lfVgn----Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~ 78 (259)
+.+....+++.|+ |...++++.+.+.|+.-+.|+.+++.++.+ ++++.++||++.-..+.-.++....
T Consensus 75 ~~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~ 146 (267)
T KOG4454|consen 75 EEDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQ 146 (267)
T ss_pred ccchhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhc
Confidence 4555677889998 899999999999999999999999988875 8889999998876665555555443
No 151
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.32 E-value=8.4 Score=37.97 Aligned_cols=80 Identities=16% Similarity=0.331 Sum_probs=58.2
Q ss_pred CCCccEEEEcCCCCC-CCHHHHHHHHhhC----CCEEEEEEeecCC----------CCC---------------------
Q 039503 12 DTTFTKVFVGGLAWE-TPTEEMRRYFEQF----GDILEAVIISDKN----------TGK--------------------- 55 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~-~te~~L~~~F~~~----G~I~~v~i~~d~~----------tg~--------------------- 55 (259)
....++|-|-||.|+ +..+||..+|..| |.|.+|.|..... .|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345788999999996 7788999999876 6899988753210 111
Q ss_pred ---------------c-ccEEEEEeCCHHHHHHHHhCCCCC-CC--CceEEEEEc
Q 039503 56 ---------------S-KGYGFVTFRDPESARRACDNPNPV-ID--GRRANCNIA 91 (259)
Q Consensus 56 ---------------~-kG~aFV~F~~~~~A~~Al~~~~~~-i~--G~~l~V~~a 91 (259)
. -=||.|+|.+.+.|.+..+.++++ +. +.+|.+++.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1 137899999999999999999964 43 455555554
No 152
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=77.61 E-value=2.1 Score=38.50 Aligned_cols=35 Identities=23% Similarity=0.485 Sum_probs=27.3
Q ss_pred CccEEEEcCCCCC------------CCHHHHHHHHhhCCCEEEEEEe
Q 039503 14 TFTKVFVGGLAWE------------TPTEEMRRYFEQFGDILEAVII 48 (259)
Q Consensus 14 ~~~~lfVgnLp~~------------~te~~L~~~F~~~G~I~~v~i~ 48 (259)
...+|++.+||-. -+|+.|+..|+.||+|..|.|.
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 3567888777632 3678899999999999998774
No 153
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=77.12 E-value=0.35 Score=45.20 Aligned_cols=64 Identities=19% Similarity=0.074 Sum_probs=52.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCC
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVID 82 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~ 82 (259)
.++|+|.+|...+...++-++|..+|+|....+-. +...-+|-|+|........|+..++.++.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 47899999999999999999999999998877643 33456778999988888888888765443
No 154
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=76.31 E-value=4.8 Score=36.40 Aligned_cols=82 Identities=13% Similarity=0.154 Sum_probs=61.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecC-------CCCCcccEEEEEeCCHHHHHHH----HhCCC--
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDK-------NTGKSKGYGFVTFRDPESARRA----CDNPN-- 78 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~-------~tg~~kG~aFV~F~~~~~A~~A----l~~~~-- 78 (259)
+-..+.|.+.||..+++-..+...|.+||.|+.|.++.+. ...+......+.|-+++.|..- ++.+.
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 3346778899999999999999999999999999999765 1233456788999998877653 33333
Q ss_pred -CCCCCceEEEEEccc
Q 039503 79 -PVIDGRRANCNIASL 93 (259)
Q Consensus 79 -~~i~G~~l~V~~a~~ 93 (259)
..+....|.|.+...
T Consensus 92 K~~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 92 KTKLKSESLTLSFVSL 107 (309)
T ss_pred HHhcCCcceeEEEEEE
Confidence 247888888877764
No 155
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=76.09 E-value=2.5 Score=35.65 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=51.8
Q ss_pred CCccEEEEcCCCCCCCHH-----HHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCc-e
Q 039503 13 TTFTKVFVGGLAWETPTE-----EMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVIDGR-R 85 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~-----~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~-~ 85 (259)
.-.++|++.+|..++-.+ ..+.+|.+|-+.....+++ +.++.-|.|.+.+.|.+|...++ ..|.|+ .
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~ 81 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNE 81 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCce
Confidence 345667888887654322 2344566565555545543 24567789999999999999988 468888 8
Q ss_pred EEEEEcccC
Q 039503 86 ANCNIASLG 94 (259)
Q Consensus 86 l~V~~a~~~ 94 (259)
+++-++...
T Consensus 82 ~k~yfaQ~~ 90 (193)
T KOG4019|consen 82 LKLYFAQPG 90 (193)
T ss_pred EEEEEccCC
Confidence 888887654
No 156
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=74.98 E-value=12 Score=27.61 Aligned_cols=57 Identities=11% Similarity=0.184 Sum_probs=40.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-CC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCC
Q 039503 18 VFVGGLAWETPTEEMRRYFEQ-FG-DILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP 77 (259)
Q Consensus 18 lfVgnLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~ 77 (259)
.|+-.++.+.+..+|++.+++ |+ .|.+|..+.-+. + ..=|||+|...++|.+....+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-G--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C--cEEEEEEeCCCCcHHHHHHhh
Confidence 334446789999999999988 55 467776654431 2 234999999988888775543
No 157
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=72.56 E-value=7 Score=30.50 Aligned_cols=45 Identities=18% Similarity=0.305 Sum_probs=25.6
Q ss_pred CCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCH-HHHHHHH
Q 039503 27 TPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDP-ESARRAC 74 (259)
Q Consensus 27 ~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~-~~A~~Al 74 (259)
++.++|++.|+.|..++ ++.+.++ ..+.|+++|+|... .-...|+
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHH
Confidence 35578999999998764 5555554 35689999999743 3334443
No 158
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=67.15 E-value=9.7 Score=31.91 Aligned_cols=65 Identities=25% Similarity=0.323 Sum_probs=44.7
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRAC 74 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al 74 (259)
........+++.+++..++++++..+|..+|.+..+.+...........+.++.+.....+...+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 220 LLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred ccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhh
Confidence 34456789999999999999999999999999977777655433333344444444444333333
No 159
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=66.17 E-value=1.1 Score=43.79 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=48.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN 78 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~ 78 (259)
..|+|||.||..+++-++|..+++.+--+.++.+..+..-.+...+++|+|.---....||..+|
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn 294 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN 294 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh
Confidence 35789999999999999999999998877777665443334456788999985555555555555
No 160
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=60.38 E-value=0.99 Score=42.71 Aligned_cols=76 Identities=13% Similarity=0.181 Sum_probs=61.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEe-ecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVII-SDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIA 91 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~-~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a 91 (259)
..+++-|.||+....++.|..++..||.++.|..+ .|.+ .-..-|++...+.+..||..+++ .+....++|.+-
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 46779999999999999999999999999998653 3332 22344788899999999999995 588888888776
Q ss_pred cc
Q 039503 92 SL 93 (259)
Q Consensus 92 ~~ 93 (259)
-.
T Consensus 155 Pd 156 (584)
T KOG2193|consen 155 PD 156 (584)
T ss_pred ch
Confidence 43
No 161
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=59.55 E-value=1.3 Score=30.02 Aligned_cols=37 Identities=32% Similarity=0.431 Sum_probs=22.2
Q ss_pred cccEEEEEeCC-HHHHHHHHhCCCCCCCCceEEEEEcc
Q 039503 56 SKGYGFVTFRD-PESARRACDNPNPVIDGRRANCNIAS 92 (259)
Q Consensus 56 ~kG~aFV~F~~-~~~A~~Al~~~~~~i~G~~l~V~~a~ 92 (259)
.+|||||...+ .++.--.-+.|++.++|-++.|++..
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 48999999987 22222223445566888899888876
No 162
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=58.37 E-value=20 Score=24.84 Aligned_cols=19 Identities=32% Similarity=0.658 Sum_probs=16.0
Q ss_pred HHHHHHHhhCCCEEEEEEe
Q 039503 30 EEMRRYFEQFGDILEAVII 48 (259)
Q Consensus 30 ~~L~~~F~~~G~I~~v~i~ 48 (259)
++||++|+..|+|.-+.|.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999877653
No 163
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.50 E-value=1.9 Score=41.10 Aligned_cols=78 Identities=6% Similarity=-0.138 Sum_probs=58.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCceEEEEEccc
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVIDGRRANCNIASL 93 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~~l~V~~a~~ 93 (259)
..+.|+..|+-.+++++|.-+|+.+|.|..+.+.+.-..+..+-.+||+-.+ +++..+|..+. ..+.+..++|.++..
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 3566788899999999999999999999988776554445566778887754 34556666655 457777888877753
No 164
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=54.72 E-value=46 Score=21.96 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=40.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCH----HHHHHHHhCC
Q 039503 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDP----ESARRACDNP 77 (259)
Q Consensus 17 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~----~~A~~Al~~~ 77 (259)
+|.|.||.-.--...|++.+.+.-.|.++.+-.. .+-.-|+|... ++..++|+.+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~~ 59 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEKA 59 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHHT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHHh
Confidence 5778888777777889999999988999988554 34577888643 5666666543
No 165
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=51.76 E-value=18 Score=26.83 Aligned_cols=32 Identities=13% Similarity=0.287 Sum_probs=24.8
Q ss_pred EEEEeCCHHHHHHHHhCCCC--CCCCceEEEEEc
Q 039503 60 GFVTFRDPESARRACDNPNP--VIDGRRANCNIA 91 (259)
Q Consensus 60 aFV~F~~~~~A~~Al~~~~~--~i~G~~l~V~~a 91 (259)
|+|+|.+..-|++.|+.-.+ .+++..+.|...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 68999999999999988764 277777666543
No 166
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=44.73 E-value=17 Score=22.42 Aligned_cols=17 Identities=12% Similarity=0.409 Sum_probs=10.6
Q ss_pred CCCCHHHHHHHHhhCCC
Q 039503 25 WETPTEEMRRYFEQFGD 41 (259)
Q Consensus 25 ~~~te~~L~~~F~~~G~ 41 (259)
.++++++|+++|.+...
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 47899999999987653
No 167
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=42.87 E-value=11 Score=35.58 Aligned_cols=62 Identities=18% Similarity=0.165 Sum_probs=48.9
Q ss_pred CccEEEEcCCCCCCCHH--------HHHHHHhh--CCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHh
Q 039503 14 TFTKVFVGGLAWETPTE--------EMRRYFEQ--FGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACD 75 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~--------~L~~~F~~--~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~ 75 (259)
..+.+|+.++..+...+ +|...|.. ++.+..+..-+|.....++|-.|++|...+.+.+.+.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34567777777655544 89999988 6777777777776667788999999999999999984
No 168
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=42.56 E-value=55 Score=24.19 Aligned_cols=48 Identities=25% Similarity=0.362 Sum_probs=32.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeC
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFR 65 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~ 65 (259)
..-||||+++..+.|.-.+.+.+..++-.-+-+..+. ...||.|-++-
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~---neqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN---NEQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC---CCCCEEEEEeC
Confidence 3459999999988887777777665544444333332 26789998873
No 169
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=41.56 E-value=1.3e+02 Score=21.68 Aligned_cols=60 Identities=8% Similarity=0.142 Sum_probs=42.1
Q ss_pred CCCCCCHHHHHH-HHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEEE
Q 039503 23 LAWETPTEEMRR-YFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCNI 90 (259)
Q Consensus 23 Lp~~~te~~L~~-~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~~ 90 (259)
++.-+.-+||.. +=..||.-.++....+ --.|-..+.++.++||+.++....-+-|+|-+
T Consensus 16 f~RPvkf~dl~~kv~~afGq~mdl~ytn~--------eL~iPl~~Q~DLDkAie~ld~s~~~ksLRilL 76 (79)
T cd06405 16 FPRPVKFKDLQQKVTTAFGQPMDLHYTNN--------ELLIPLKNQEDLDRAIELLDRSPHMKSLRILL 76 (79)
T ss_pred cCCCccHHHHHHHHHHHhCCeeeEEEecc--------cEEEeccCHHHHHHHHHHHccCccccceeEeE
Confidence 455566666655 4467999888877543 26788899999999999998654444455443
No 170
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=41.17 E-value=29 Score=31.28 Aligned_cols=35 Identities=23% Similarity=0.088 Sum_probs=25.1
Q ss_pred EEEEeCCHHHHHHHHhCCCCCCCCceEEEEEcccCC
Q 039503 60 GFVTFRDPESARRACDNPNPVIDGRRANCNIASLGR 95 (259)
Q Consensus 60 aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~~a~~~~ 95 (259)
|||+|++..+|..|++.+.. .+.++++|+.|-..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~-~~~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLS-KRPNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhc-CCCCCceEeeCCCcc
Confidence 79999999999999996543 223555777665433
No 171
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=40.69 E-value=1.1e+02 Score=22.42 Aligned_cols=46 Identities=22% Similarity=0.151 Sum_probs=33.6
Q ss_pred HHHHHHHHhhCC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC
Q 039503 29 TEEMRRYFEQFG-DILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN 78 (259)
Q Consensus 29 e~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~ 78 (259)
++.++++++++| +++++.+.. |.---...+++.|.+.+.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~----G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTL----GEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEec----CCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 456788888876 688888775 3445677889999998888765543
No 172
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.28 E-value=1.3e+02 Score=24.61 Aligned_cols=55 Identities=13% Similarity=0.209 Sum_probs=39.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhC---CCEEEEEEeecCCC---------CCccc-EEEEEeCCHHHH
Q 039503 16 TKVFVGGLAWETPTEEMRRYFEQF---GDILEAVIISDKNT---------GKSKG-YGFVTFRDPESA 70 (259)
Q Consensus 16 ~~lfVgnLp~~~te~~L~~~F~~~---G~I~~v~i~~d~~t---------g~~kG-~aFV~F~~~~~A 70 (259)
.+|++.-+...++|++.++..++= +++++|.+-+.+++ ...+. |-+|.|++-...
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~l 155 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKEL 155 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchhh
Confidence 789999999999999999998764 56666666543321 12233 888999876543
No 173
>PRK11901 hypothetical protein; Reviewed
Probab=39.01 E-value=49 Score=30.53 Aligned_cols=61 Identities=15% Similarity=0.241 Sum_probs=40.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEE--EeCCHHHHHHHHhCCCCC
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFV--TFRDPESARRACDNPNPV 80 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV--~F~~~~~A~~Al~~~~~~ 80 (259)
..+|-|-. ..+++.|+.|..+++ +.+++|.....+|+ ..|..| .|.+.++|.+||+.|-..
T Consensus 245 ~YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 245 HYTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CeEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 34455443 356888888888876 45566655433333 345444 789999999999999754
No 174
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B ....
Probab=36.01 E-value=1.3e+02 Score=20.49 Aligned_cols=44 Identities=23% Similarity=0.368 Sum_probs=30.2
Q ss_pred HHHHHHhhCCCEEEEEEeec--CCCCCcccEEEEEeCCHHHHHHHHhC
Q 039503 31 EMRRYFEQFGDILEAVIISD--KNTGKSKGYGFVTFRDPESARRACDN 76 (259)
Q Consensus 31 ~L~~~F~~~G~I~~v~i~~d--~~tg~~kG~aFV~F~~~~~A~~Al~~ 76 (259)
+|++.+.++..|.++.++.. ...| ..-+|||.. +.++..+.|+.
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g-~~l~a~vv~-~~~~i~~~~~~ 46 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWG-ERLVAFVVL-DEEEIRDHLRD 46 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTE-EEEEEEEEE-HHHHHHHHHHH
T ss_pred CHHHHHhcCCCccEEEEEEEEccccc-ccceeEEEe-eecccccchhh
Confidence 57788899988999877643 3223 567899988 44555555554
No 175
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=35.02 E-value=65 Score=24.41 Aligned_cols=48 Identities=15% Similarity=0.218 Sum_probs=30.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCC
Q 039503 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRD 66 (259)
Q Consensus 16 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~ 66 (259)
.-||||+++..+.|.--+.+-+.+++-.-+-+..+ ....||.|-++.+
T Consensus 28 ~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~---~~eqG~~~~t~G~ 75 (97)
T PRK11558 28 AGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT---NTESGFEFQTFGE 75 (97)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC---CCCCCcEEEecCC
Confidence 45999999988877665555565554332322222 2335999988764
No 176
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=34.98 E-value=54 Score=23.73 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.8
Q ss_pred cccEEEEEeCCHHHHHHHHhCCCCC
Q 039503 56 SKGYGFVTFRDPESARRACDNPNPV 80 (259)
Q Consensus 56 ~kG~aFV~F~~~~~A~~Al~~~~~~ 80 (259)
.+||-|||=.+.+++.+||+.+.+.
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTE
T ss_pred CceEEEEEeCCHHHHHHHHhcccce
Confidence 6999999999999999999998753
No 177
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=34.15 E-value=21 Score=26.56 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=20.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHH
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYF 36 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F 36 (259)
....++|-|.||+..++|++|++.+
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeE
Confidence 4457889999999999999998643
No 178
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=33.60 E-value=1.2e+02 Score=21.82 Aligned_cols=57 Identities=9% Similarity=0.168 Sum_probs=39.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHhh-CC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhC
Q 039503 17 KVFVGGLAWETPTEEMRRYFEQ-FG-DILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76 (259)
Q Consensus 17 ~lfVgnLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~ 76 (259)
+-|+-.++.+.+..+|++.++. |+ .|.+|..+.-+. ..-=|||++..-+.|.+.-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHh
Confidence 3445557889999999999988 55 466666554331 223499999888887776544
No 179
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=32.89 E-value=64 Score=25.05 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=19.7
Q ss_pred CCCCCHHHHHHHHhhCCCEEEEEEe
Q 039503 24 AWETPTEEMRRYFEQFGDILEAVII 48 (259)
Q Consensus 24 p~~~te~~L~~~F~~~G~I~~v~i~ 48 (259)
...+|+++|++.|.+|-.-.++.|+
T Consensus 42 ~~~Tt~~eiedaF~~f~~RdDIaIi 66 (121)
T KOG3432|consen 42 DSKTTVEEIEDAFKSFTARDDIAII 66 (121)
T ss_pred eccCCHHHHHHHHHhhccccCeEEE
Confidence 4589999999999999775555554
No 180
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=32.41 E-value=1.9e+02 Score=20.73 Aligned_cols=66 Identities=11% Similarity=0.054 Sum_probs=42.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCce
Q 039503 17 KVFVGGLAWETPTEEMRRYFEQFG-DILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRR 85 (259)
Q Consensus 17 ~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~ 85 (259)
.|+|.|-+.- -+.+-.+|+.-| .|+++.+-.....+.+ .+-++...+.+..+..++.+++.++=.+
T Consensus 6 si~v~n~pGV--L~Ri~~lf~rRgfNI~Sl~vg~te~~~~s-riti~~~~~~~~i~qi~kQL~KLidV~~ 72 (76)
T PRK06737 6 SLVIHNDPSV--LLRISGIFARRGYYISSLNLNERDTSGVS-EMKLTAVCTENEATLLVSQLKKLINVLQ 72 (76)
T ss_pred EEEEecCCCH--HHHHHHHHhccCcceEEEEecccCCCCee-EEEEEEECCHHHHHHHHHHHhCCcCEEE
Confidence 4566655432 245677898877 5887776533222222 3567767899999999998887655433
No 181
>PRK10905 cell division protein DamX; Validated
Probab=32.23 E-value=67 Score=29.62 Aligned_cols=63 Identities=11% Similarity=0.200 Sum_probs=39.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEE--EEeCCHHHHHHHHhCCCCCC
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGF--VTFRDPESARRACDNPNPVI 81 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aF--V~F~~~~~A~~Al~~~~~~i 81 (259)
...+|-|+.+ .+++.|++|..+++ +....+.....+|+. .|-. -.|.++++|++||+.|-..|
T Consensus 246 ~~YTLQL~A~---Ss~~~l~~fakKlg-L~~y~vy~TtRnGkp-WYVV~yG~YaSraeAk~AiakLPa~v 310 (328)
T PRK10905 246 SHYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKRAVSTLPADV 310 (328)
T ss_pred CceEEEEEec---CCHHHHHHHHHHcC-CCceEEEEeccCCce-EEEEEecCCCCHHHHHHHHHHCCHHH
Confidence 3455665544 46688888888885 344434433323332 3333 37899999999999997543
No 182
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=32.18 E-value=2.1e+02 Score=21.32 Aligned_cols=58 Identities=10% Similarity=0.183 Sum_probs=31.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHh-------hC-CCEEEEEEeecC-----CCCCccc-EEEEEeCCHHHHHHHHhC
Q 039503 17 KVFVGGLAWETPTEEMRRYFE-------QF-GDILEAVIISDK-----NTGKSKG-YGFVTFRDPESARRACDN 76 (259)
Q Consensus 17 ~lfVgnLp~~~te~~L~~~F~-------~~-G~I~~v~i~~d~-----~tg~~kG-~aFV~F~~~~~A~~Al~~ 76 (259)
.+|| |..+++++++.++.+ +. |+|.++...-.+ ..+..+| |.++.|.-..++-+.++.
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 4555 566777777665544 43 466665432111 1233455 577888865555555543
No 183
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=31.78 E-value=39 Score=25.03 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=27.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhh-CCCEEEEEEeecCCCCCcccEEEEEeCC
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQ-FGDILEAVIISDKNTGKSKGYGFVTFRD 66 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kG~aFV~F~~ 66 (259)
..-||||+++..+.|.--+.+-+. .++- .+.++.. +....||.|-++.+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~G-~avm~~~--~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPKG-SLVITWS--SNTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCc-cEEEEEe--CCCCCCcEEEecCC
Confidence 345999999888776654444444 2322 2222222 22346788887754
No 184
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=31.39 E-value=1.2e+02 Score=22.94 Aligned_cols=46 Identities=30% Similarity=0.517 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHhh-CCCEEEEEEeec----CCCCCcccEEEEEeCCHHHHHH
Q 039503 26 ETPTEEMRRYFEQ-FGDILEAVIISD----KNTGKSKGYGFVTFRDPESARR 72 (259)
Q Consensus 26 ~~te~~L~~~F~~-~G~I~~v~i~~d----~~tg~~kG~aFV~F~~~~~A~~ 72 (259)
..+..+|++-+.+ ++.=.++.++.. -..+++.|||.| |.+.+.+.+
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 6778888877654 553333333332 223445566655 555555443
No 185
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=31.19 E-value=50 Score=23.02 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=24.3
Q ss_pred CCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEE
Q 039503 27 TPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFV 62 (259)
Q Consensus 27 ~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV 62 (259)
.-|.+|+++|-+--+|+++.|...|. ..+|-|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKr--i~~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKR--IRKGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEe--eeCCceeE
Confidence 34567888888888999999887653 33566666
No 186
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=30.98 E-value=1.6e+02 Score=23.19 Aligned_cols=46 Identities=22% Similarity=0.468 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHhhC-CCEEEEEEe----ecCCCCCcccEEEEEeCCHHHHHH
Q 039503 26 ETPTEEMRRYFEQF-GDILEAVII----SDKNTGKSKGYGFVTFRDPESARR 72 (259)
Q Consensus 26 ~~te~~L~~~F~~~-G~I~~v~i~----~d~~tg~~kG~aFV~F~~~~~A~~ 72 (259)
+++.+||++-+++. -.-.++.++ ..-.+|++.|||.| |.+.+.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 68889998877653 322233222 33446778889987 666555543
No 187
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=29.77 E-value=1e+02 Score=22.64 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=20.7
Q ss_pred CEEEEEEeecCCCCCcccEEEEEeCC
Q 039503 41 DILEAVIISDKNTGKSKGYGFVTFRD 66 (259)
Q Consensus 41 ~I~~v~i~~d~~tg~~kG~aFV~F~~ 66 (259)
+|++|+|..-...++-++||=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47888887766568889999999976
No 188
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=29.48 E-value=2.4e+02 Score=20.99 Aligned_cols=53 Identities=13% Similarity=0.214 Sum_probs=40.2
Q ss_pred CCCCCCCHHHHHHH----------HhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC
Q 039503 22 GLAWETPTEEMRRY----------FEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN 78 (259)
Q Consensus 22 nLp~~~te~~L~~~----------F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~ 78 (259)
+||.+++.+++.++ +.+-|.+..+.-+ .|+...++.+.-+|.++..+.|..+-
T Consensus 10 ~~P~~~~~~~~~~~~a~E~~~a~eLq~~G~~~~lWr~----~G~~~n~~Ifdv~d~~eLh~lL~sLP 72 (91)
T PF02426_consen 10 NVPPDMPPEEVDRLKAREKARAQELQRQGKWRHLWRV----VGRYANVSIFDVEDNDELHELLSSLP 72 (91)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeEEEEe----cCCcceEEEEECCCHHHHHHHHHhCC
Confidence 57888877765443 4456888887544 36678899999999999999888876
No 189
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=29.34 E-value=2.2e+02 Score=20.40 Aligned_cols=68 Identities=7% Similarity=0.037 Sum_probs=41.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEE
Q 039503 17 KVFVGGLAWETPTEEMRRYFEQFG-DILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANC 88 (259)
Q Consensus 17 ~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V 88 (259)
.|.|.|-+- --+.+-.+|+..| .|+++.+-...+.+.++ .-++. .+....+..++.+++.++=.+++|
T Consensus 7 si~v~n~pG--VL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sr-iti~v-~~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 7 TIKARFRPE--VLERVLRVVRHRGFQVCSMNMTQNTDAQNIN-IELTV-ASERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred EEEEECCcc--HHHHHHHHHhcCCeeeeeEEeeecCCCCEEE-EEEEE-CCCchHHHHHHHHhcCcCeEEEEE
Confidence 345554432 2245778899888 57777765432222233 44444 678888888888887766655554
No 190
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=29.25 E-value=2.6e+02 Score=22.09 Aligned_cols=69 Identities=9% Similarity=0.002 Sum_probs=45.6
Q ss_pred cEEEEcCCCCC---CCHHHHHHHHhhCCC-EEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCC-ceEEEEE
Q 039503 16 TKVFVGGLAWE---TPTEEMRRYFEQFGD-ILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDG-RRANCNI 90 (259)
Q Consensus 16 ~~lfVgnLp~~---~te~~L~~~F~~~G~-I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G-~~l~V~~ 90 (259)
..|.|...... .+-+.+++.+++-|- ++++..-. +-..|.|.+.++-.+|.+.+...+.. -.|.+++
T Consensus 36 pavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~--------~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl 107 (127)
T PRK10629 36 STLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEN--------DSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQD 107 (127)
T ss_pred ceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeC--------CEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 45666655222 566788888988773 45554422 25789999999999998888766543 4555555
Q ss_pred cc
Q 039503 91 AS 92 (259)
Q Consensus 91 a~ 92 (259)
+.
T Consensus 108 ~p 109 (127)
T PRK10629 108 DN 109 (127)
T ss_pred CC
Confidence 53
No 191
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=29.24 E-value=1.1e+02 Score=24.87 Aligned_cols=60 Identities=13% Similarity=0.195 Sum_probs=39.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFG-DILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~A 73 (259)
-..+||.|.-+..--++--+++|+.|- .|.+|.+.++.....-+....|...+..+.++.
T Consensus 86 ~~l~iyFG~~~~~~~~~lAr~lFe~F~~PlL~v~~~~~~~~w~i~~i~~~~~~~l~~~e~~ 146 (153)
T PF14401_consen 86 FELSIYFGQTPDPRLERLARQLFERFPCPLLEVEFVRDDGKWRISSIKPLSLSELSEEEQD 146 (153)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHhCCCceEEEEEEecCCcEEEeeEeecChhhCCHHHHH
Confidence 345788887755555556688999986 588888877654345556666666655555543
No 192
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=29.00 E-value=1.6e+02 Score=20.41 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=40.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCH----HHHHHHHhCC
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDP----ESARRACDNP 77 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~----~~A~~Al~~~ 77 (259)
..+|.|.++.=.--...+++.++....|.++.+-.+ ++-++|+|++. ++...||+..
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~------~~~~~V~~d~~~~~~~~i~~ai~~a 63 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE------KGTATVTFDSNKVDIEAIIEAIEDA 63 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc------cCeEEEEEcCCcCCHHHHHHHHHHc
Confidence 356788887766666788999998888988888665 34599999873 4444555443
No 193
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=28.49 E-value=47 Score=29.29 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=28.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEA 45 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v 45 (259)
+.....||+-||+..++++.|+++.+.+|.+..+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 3456789999999999999999999999865544
No 194
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=27.98 E-value=72 Score=27.05 Aligned_cols=51 Identities=18% Similarity=0.106 Sum_probs=33.7
Q ss_pred CCHHHHHHHHh-hCCCEEEEEEeecCCCC--CcccEEEEEeCCHHHHHHHHhCCC
Q 039503 27 TPTEEMRRYFE-QFGDILEAVIISDKNTG--KSKGYGFVTFRDPESARRACDNPN 78 (259)
Q Consensus 27 ~te~~L~~~F~-~~G~I~~v~i~~d~~tg--~~kG~aFV~F~~~~~A~~Al~~~~ 78 (259)
++++.|..+.. .-|.+..|..-+.. .+ ..+|-.||+|.+.+.+.++++...
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~~e 171 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDTHE 171 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhhhh
Confidence 45555554432 12677777654432 22 457889999999999998887755
No 195
>PF14893 PNMA: PNMA
Probab=27.40 E-value=55 Score=30.31 Aligned_cols=51 Identities=10% Similarity=0.220 Sum_probs=31.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhh-CCCEEEEEEee---cCCCCCcccEEEEEeCCH
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQ-FGDILEAVIIS---DKNTGKSKGYGFVTFRDP 67 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~-~G~I~~v~i~~---d~~tg~~kG~aFV~F~~~ 67 (259)
.+.|.|.+||.++++++|++.+.. +-.+-..+|+. .++ .+..-++|+|.+.
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~--~~~~aalve~~e~ 72 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRRE--ENAKAALVEFAED 72 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhh--cccceeeeecccc
Confidence 467899999999999999887653 22222233221 111 1234688888653
No 196
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=27.24 E-value=1.8e+02 Score=25.62 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=30.0
Q ss_pred ccEEEEcCCCCCC--CHHHHHHHHhhCCCEE----EEEEeecCCCCCcccEEEEEeC
Q 039503 15 FTKVFVGGLAWET--PTEEMRRYFEQFGDIL----EAVIISDKNTGKSKGYGFVTFR 65 (259)
Q Consensus 15 ~~~lfVgnLp~~~--te~~L~~~F~~~G~I~----~v~i~~d~~tg~~kG~aFV~F~ 65 (259)
...|+|-.|..+. +..+|+.+|.++|-.. .|.++.++ .|.|+|.
T Consensus 94 GvaiiVe~lTDN~nRt~~~ir~~f~K~gg~l~~~gsv~~~Fe~-------kG~i~~~ 143 (238)
T TIGR01033 94 GVAIIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLFSR-------KGVIEVP 143 (238)
T ss_pred ceEEEEEEecCCHHhHHHHHHHHHHHcCCeeCCCCceeeeeec-------ceEEEEC
Confidence 4567777787765 5578999999987532 35556554 3667774
No 197
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=27.13 E-value=1.3e+02 Score=20.87 Aligned_cols=42 Identities=24% Similarity=0.341 Sum_probs=28.5
Q ss_pred HHHHHHHhhCCCEEEEEEeecCCCCCc-ccEEEEEeCCHHHHHHHHhCC
Q 039503 30 EEMRRYFEQFGDILEAVIISDKNTGKS-KGYGFVTFRDPESARRACDNP 77 (259)
Q Consensus 30 ~~L~~~F~~~G~I~~v~i~~d~~tg~~-kG~aFV~F~~~~~A~~Al~~~ 77 (259)
++|++.+.++| +.-+++. |.. -++.|+.+.+.+.++++++.+
T Consensus 37 ~~~~~~~~~~G-a~~~~~s-----GsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMS-----GSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEE-----TTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecC-----CCCCCCeEEEEECCHHHHHHHHHHH
Confidence 45677778888 4445442 322 467888888888888887654
No 198
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=26.49 E-value=1.5e+02 Score=24.04 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=26.1
Q ss_pred EEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC
Q 039503 42 ILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP 79 (259)
Q Consensus 42 I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~ 79 (259)
|.+|.+... .+||.||+....+++..+|+.+.+
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCC
Confidence 556655433 589999999988999999988874
No 199
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=26.36 E-value=1.9e+02 Score=19.73 Aligned_cols=50 Identities=14% Similarity=0.184 Sum_probs=29.2
Q ss_pred CHHHHHHHHhhCC-CEEEEEEeecCCCCCcccEEEEEeCC---HHHHHHHHhCCC
Q 039503 28 PTEEMRRYFEQFG-DILEAVIISDKNTGKSKGYGFVTFRD---PESARRACDNPN 78 (259)
Q Consensus 28 te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~aFV~F~~---~~~A~~Al~~~~ 78 (259)
.-.++.+.|+.+| .|.++.-...+. ....-.-||++.. ....+++++.+.
T Consensus 12 ~L~~vL~~f~~~~vni~~I~Srp~~~-~~~~~~f~id~~~~~~~~~~~~~l~~l~ 65 (75)
T cd04880 12 ALAKALKVFAERGINLTKIESRPSRK-GLWEYEFFVDFEGHIDDPDVKEALEELK 65 (75)
T ss_pred HHHHHHHHHHHCCCCEEEEEeeecCC-CCceEEEEEEEECCCCCHHHHHHHHHHH
Confidence 3456778888886 566664332221 1223455788874 556667776654
No 200
>PF14084 DUF4264: Protein of unknown function (DUF4264)
Probab=26.30 E-value=80 Score=21.08 Aligned_cols=37 Identities=8% Similarity=0.088 Sum_probs=31.8
Q ss_pred EEEEEeCCHHHHHHHHhCCCCCCCCceEEEEEcccCC
Q 039503 59 YGFVTFRDPESARRACDNPNPVIDGRRANCNIASLGR 95 (259)
Q Consensus 59 ~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~~a~~~~ 95 (259)
.|-++|...++.-+.+..||..+..+.|-.-+++..+
T Consensus 5 iat~~~~~~~dlYKvVDfLNktLK~~~lmFGLs~d~~ 41 (52)
T PF14084_consen 5 IATKEFEYNDDLYKVVDFLNKTLKDKNLMFGLSKDEK 41 (52)
T ss_pred EEEEEecCCccHHHHHHHHhhhhhhccEEEEEeecCc
Confidence 4778999999999999999999999999888887543
No 201
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.19 E-value=1.4e+02 Score=29.10 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=44.0
Q ss_pred EEEcCCCCCCCH---HHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceE
Q 039503 18 VFVGGLAWETPT---EEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRA 86 (259)
Q Consensus 18 lfVgnLp~~~te---~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l 86 (259)
=+||||..-... ..|.++=++||.|-.+++-. .-.|...+.+.|+.|+...+..+.+|..
T Consensus 35 PiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 35 PIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred CccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHHhCCccccCCCC
Confidence 367888754333 44556666899999887732 2467788999999999998877888875
No 202
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.97 E-value=1.4e+02 Score=24.42 Aligned_cols=46 Identities=20% Similarity=0.195 Sum_probs=36.8
Q ss_pred CCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCC
Q 039503 22 GLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP 77 (259)
Q Consensus 22 nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~ 77 (259)
.|...+.++.|.++.+-+|-|.+.+ -.| -.+.|.|.+.+.+||+.+
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~ 163 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEI 163 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHHH
Confidence 4777889999999999999888765 222 356789999999999875
No 203
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=24.55 E-value=86 Score=23.15 Aligned_cols=31 Identities=10% Similarity=0.244 Sum_probs=22.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-CC-CEEEEEEe
Q 039503 18 VFVGGLAWETPTEEMRRYFEQ-FG-DILEAVII 48 (259)
Q Consensus 18 lfVgnLp~~~te~~L~~~F~~-~G-~I~~v~i~ 48 (259)
.|+-.++.+++..+|++.+++ || .|.+|..+
T Consensus 22 ~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~ 54 (91)
T PF00276_consen 22 QYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTM 54 (91)
T ss_dssp EEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEE
T ss_pred EEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEe
Confidence 344457889999999999987 66 35666544
No 204
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=24.52 E-value=1.8e+02 Score=21.95 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=25.8
Q ss_pred HHHHHhhCCCEE-----EEEEeecCCCCCcccEEEEEeCCHHHHHHHHhC
Q 039503 32 MRRYFEQFGDIL-----EAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76 (259)
Q Consensus 32 L~~~F~~~G~I~-----~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~ 76 (259)
+...|++||.-- ++..+.. .........|+|.+.+.|..+...
T Consensus 25 ~~~a~~~~Ggr~LvRGG~v~~lEG--~w~ptr~vviEFps~~~ar~~y~S 72 (96)
T COG5470 25 AKPAIEKFGGRYLVRGGEVETLEG--EWRPTRNVVIEFPSLEAARDCYNS 72 (96)
T ss_pred hHHHHHHhCCeeEeeCCCeeeccC--CCCcccEEEEEcCCHHHHHHHhcC
Confidence 455788888411 1222221 133345789999999988876543
No 205
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=24.11 E-value=76 Score=19.28 Aligned_cols=18 Identities=6% Similarity=0.268 Sum_probs=15.0
Q ss_pred CCCHHHHHHHHhhCCCEE
Q 039503 26 ETPTEEMRRYFEQFGDIL 43 (259)
Q Consensus 26 ~~te~~L~~~F~~~G~I~ 43 (259)
.+++++|++.+..+|.+.
T Consensus 3 tWs~~~L~~wL~~~gi~~ 20 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPV 20 (38)
T ss_pred CCCHHHHHHHHHHcCCCC
Confidence 578999999999998543
No 206
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=23.93 E-value=1.3e+02 Score=22.62 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=19.7
Q ss_pred CEEEEEEeecCCCCCcccEEEEEeCC
Q 039503 41 DILEAVIISDKNTGKSKGYGFVTFRD 66 (259)
Q Consensus 41 ~I~~v~i~~d~~tg~~kG~aFV~F~~ 66 (259)
+|++|+|..-...|+-|+||=|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 47788776544457889999999986
No 207
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=23.88 E-value=2.8e+02 Score=21.30 Aligned_cols=44 Identities=18% Similarity=0.302 Sum_probs=30.8
Q ss_pred HHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCC
Q 039503 31 EMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP 77 (259)
Q Consensus 31 ~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~ 77 (259)
+|..+++++| |.+-.|..|.. .+.-||++++.|.++..++|...
T Consensus 28 E~~a~lk~ag-i~nYSIfLde~--~n~lFgy~E~~d~~a~m~~~a~~ 71 (105)
T COG3254 28 ELLALLKEAG-IRNYSIFLDEE--ENLLFGYWEYEDFEADMAKMAET 71 (105)
T ss_pred HHHHHHHHcC-CceeEEEecCC--cccEEEEEEEcChHHHHHHHhCC
Confidence 5667788888 56666666542 34679999999777777776654
No 208
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=23.59 E-value=2.8e+02 Score=19.73 Aligned_cols=58 Identities=9% Similarity=0.062 Sum_probs=37.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-------CCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCC
Q 039503 18 VFVGGLAWETPTEEMRRYFEQ-------FGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP 77 (259)
Q Consensus 18 lfVgnLp~~~te~~L~~~F~~-------~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~ 77 (259)
|...+|+..+|.++|.++..+ +..|.-++-..+. .+.|-||+.+=.|.+++.++-+.-
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~--d~~k~~Cly~Ap~~eaV~~~~~~a 67 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSE--DDGKIFCLYEAPDEEAVREHARRA 67 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEec--CCCeEEEEEECCCHHHHHHHHHHc
Confidence 456788888999998876654 3233333222221 234788998888999888877664
No 209
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=23.40 E-value=1.7e+02 Score=25.00 Aligned_cols=51 Identities=24% Similarity=0.351 Sum_probs=33.7
Q ss_pred CCCHHHHHHH---HhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC
Q 039503 26 ETPTEEMRRY---FEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN 78 (259)
Q Consensus 26 ~~te~~L~~~---F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~ 78 (259)
++++++|++| ..+||. .. .|+.|+.++..+-..|+.=.|.+.+.+|++.+.
T Consensus 38 ~i~~~~lk~F~k~AkKyGV-~y-av~kdk~~~~~~~~V~FkA~Da~~i~~af~~~~ 91 (204)
T PF12687_consen 38 EITDEDLKEFKKEAKKYGV-DY-AVKKDKSTGPGKYDVFFKAKDADVINRAFKEFS 91 (204)
T ss_pred ecCHhhHHHHHHHHHHcCC-ce-EEeeccCCCCCcEEEEEEcCcHHHHHHHHHHHH
Confidence 5667676654 567883 33 356776555445556666678888889988865
No 210
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=22.78 E-value=1.3e+02 Score=25.62 Aligned_cols=47 Identities=36% Similarity=0.379 Sum_probs=31.2
Q ss_pred CCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCC
Q 039503 27 TPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP 77 (259)
Q Consensus 27 ~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~ 77 (259)
.+.++.+++++.++.-. +.|..| |-..|-+.+...+.++|.++|+.+
T Consensus 24 ~~~~~A~~~l~~~~~p~-~ViKad---Gla~GKGV~i~~~~~eA~~~l~~~ 70 (194)
T PF01071_consen 24 TDYEEALEYLEEQGYPY-VVIKAD---GLAAGKGVVIADDREEALEALREI 70 (194)
T ss_dssp SSHHHHHHHHHHHSSSE-EEEEES---SSCTTTSEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCc-eEEccC---CCCCCCEEEEeCCHHHHHHHHHHh
Confidence 36677888888776433 344444 334444566679999999999875
No 211
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=22.61 E-value=1.8e+02 Score=23.23 Aligned_cols=45 Identities=9% Similarity=0.414 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHhh-CC-CEEEEEEee----cCCCCCcccEEEEEeCCHHHHH
Q 039503 26 ETPTEEMRRYFEQ-FG-DILEAVIIS----DKNTGKSKGYGFVTFRDPESAR 71 (259)
Q Consensus 26 ~~te~~L~~~F~~-~G-~I~~v~i~~----d~~tg~~kG~aFV~F~~~~~A~ 71 (259)
..+.++|++-+.+ |+ .=.++.++. .-..+++.|||.| |++.+.+.
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~k 85 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALK 85 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 6788899887765 55 222222322 2223455666665 55554443
No 212
>PHA01632 hypothetical protein
Probab=22.59 E-value=93 Score=21.13 Aligned_cols=20 Identities=15% Similarity=0.389 Sum_probs=15.9
Q ss_pred EEcCCCCCCCHHHHHHHHhh
Q 039503 19 FVGGLAWETPTEEMRRYFEQ 38 (259)
Q Consensus 19 fVgnLp~~~te~~L~~~F~~ 38 (259)
.|..+|..-||++|++++.+
T Consensus 20 lieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 20 LIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred ehhhcCCCCCHHHHHHHHHH
Confidence 34578999999999987654
No 213
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=22.02 E-value=53 Score=25.84 Aligned_cols=68 Identities=10% Similarity=0.014 Sum_probs=41.3
Q ss_pred EEEEcCCC--CCCCHHHHHHHHhhC-CCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEE
Q 039503 17 KVFVGGLA--WETPTEEMRRYFEQF-GDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCN 89 (259)
Q Consensus 17 ~lfVgnLp--~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~ 89 (259)
...|+.+- ..++-+.|...+.+. +....+.+..- ..++..+.|.+.+++.++++.-.-.+++..|.++
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~ 87 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQ 87 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhh
Confidence 44555542 345666777666553 22223333221 2578999999999999988865555777655554
No 214
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=21.86 E-value=2.4e+02 Score=19.47 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=26.8
Q ss_pred HHHHHHHHhhCC-CEEEEEEeecCCCCCccc-EEEEEeC-CHHHHHHHHhCCCC
Q 039503 29 TEEMRRYFEQFG-DILEAVIISDKNTGKSKG-YGFVTFR-DPESARRACDNPNP 79 (259)
Q Consensus 29 e~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG-~aFV~F~-~~~~A~~Al~~~~~ 79 (259)
-.++-+.|+.+| .+++|.- -+..++.-. .-||+|+ +.+..+++|+.+..
T Consensus 14 L~~vL~~f~~~~iNlt~IeS--RP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 14 LARALKLFEEFGVNLTHIES--RPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHCCCcEEEEEC--CCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 456777888887 3444432 221122222 3467776 55566777777653
No 215
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=21.74 E-value=2.3e+02 Score=18.01 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=28.6
Q ss_pred HHHHHHHhhCC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHh
Q 039503 30 EEMRRYFEQFG-DILEAVIISDKNTGKSKGYGFVTFRDPESARRACD 75 (259)
Q Consensus 30 ~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~ 75 (259)
.+|-++|.+.| .|..+.+.... ..+....+++++.+.|.++++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~---~~~~~~~~~v~~~~~a~~~l~ 56 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETR---GEFGILRLIFSDPERAKEVLK 56 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEcc---CCcEEEEEEECCHHHHHHHhC
Confidence 45667777766 57777765432 245677778888888777653
No 216
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=21.51 E-value=3.4e+02 Score=19.95 Aligned_cols=67 Identities=13% Similarity=0.078 Sum_probs=44.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCC-CEEEEEEeecCCCCCcccEEEEEe-CCHHHHHHHHhCCCCCCCCceE
Q 039503 17 KVFVGGLAWETPTEEMRRYFEQFG-DILEAVIISDKNTGKSKGYGFVTF-RDPESARRACDNPNPVIDGRRA 86 (259)
Q Consensus 17 ~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~aFV~F-~~~~~A~~Al~~~~~~i~G~~l 86 (259)
+++|.|-+-- -..+..+|+..| .|.++.+-.....+.+| +-+|.- .+.+..++.++.+++.++=.++
T Consensus 6 svlVeN~~GV--L~Rit~lFsRRg~NI~SLtvg~Te~~~iSR-mtivv~~~d~~~ieqI~kQL~KlidVikV 74 (84)
T PRK13562 6 KLQVADQVST--LNRITSAFVRLQYNIDTLHVTHSEQPGISN-MEIQVDIQDDTSLHILIKKLKQQINVLTV 74 (84)
T ss_pred EEEEECCCCH--HHHHHHHHhccCcCeeeEEecccCCCCceE-EEEEEeCCCHHHHHHHHHHHhCCccEEEE
Confidence 4566554432 245678898877 58888775544334444 667765 7888889999988876654443
No 217
>PRK12378 hypothetical protein; Provisional
Probab=21.38 E-value=2.2e+02 Score=24.98 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=26.0
Q ss_pred ccEEEEcCCCCCC--CHHHHHHHHhhCCCEE----EEEEeecC
Q 039503 15 FTKVFVGGLAWET--PTEEMRRYFEQFGDIL----EAVIISDK 51 (259)
Q Consensus 15 ~~~lfVgnLp~~~--te~~L~~~F~~~G~I~----~v~i~~d~ 51 (259)
...|.|-.|..+. |..+|+.+|.++|--. .|.++.++
T Consensus 91 GvaiiVe~lTDN~nRt~~~vr~~f~K~gg~l~~~gsv~~~Fe~ 133 (235)
T PRK12378 91 GVMVIVECLTDNVNRTVANVRSAFNKNGGNLGTSGSVAFMFDH 133 (235)
T ss_pred CcEEEEEECCCCHHHHHHHHHHHHhhcCCeECCCCceeeeeec
Confidence 4567788887765 5578999999997532 36666654
No 218
>PRK00110 hypothetical protein; Validated
Probab=21.37 E-value=2.6e+02 Score=24.75 Aligned_cols=54 Identities=20% Similarity=0.293 Sum_probs=34.0
Q ss_pred ccEEEEcCCCCCC--CHHHHHHHHhhCCCEE----EEEEeecCCCCCcccEEEEEeC--CHHHHHH-HHh
Q 039503 15 FTKVFVGGLAWET--PTEEMRRYFEQFGDIL----EAVIISDKNTGKSKGYGFVTFR--DPESARR-ACD 75 (259)
Q Consensus 15 ~~~lfVgnLp~~~--te~~L~~~F~~~G~I~----~v~i~~d~~tg~~kG~aFV~F~--~~~~A~~-Al~ 75 (259)
...|.|-.|..+. |..+||.+|.++|-.. .|.++.++ .|.|+|. +.+++.. ||+
T Consensus 94 GvaiiVe~lTDN~nRt~~~vR~~f~K~gG~l~~~Gsv~~~Fe~-------kG~i~~~~~~~d~~~e~aie 156 (245)
T PRK00110 94 GVAIIVEALTDNRNRTAAEVRHAFSKNGGNLGETGSVSYMFDR-------KGVIVIEPLDEDELMEAALE 156 (245)
T ss_pred CeEEEEEEecCCHHHHHHHHHHHHHhcCceeCCCcceEEEecc-------ceEEEeCCCCHHHHHHHHHh
Confidence 4567777787765 5578999999986432 35666654 3666665 3444443 444
No 219
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=21.35 E-value=1.3e+02 Score=22.38 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=27.0
Q ss_pred EEEEcCCCCCCCHHHHHHH---HhhCCCEEEEEE--eecCCCCCcccEEEEEe
Q 039503 17 KVFVGGLAWETPTEEMRRY---FEQFGDILEAVI--ISDKNTGKSKGYGFVTF 64 (259)
Q Consensus 17 ~lfVgnLp~~~te~~L~~~---F~~~G~I~~v~i--~~d~~tg~~kG~aFV~F 64 (259)
..|+.+|+.++.+.++... |..+..-..|.+ ........+.|++.+.+
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~ 64 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLV 64 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEE
Confidence 4588999999988876554 444443333332 12234455667776544
No 220
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=21.08 E-value=35 Score=30.50 Aligned_cols=74 Identities=11% Similarity=0.207 Sum_probs=52.1
Q ss_pred CccEEEEcCCCCCCCHHH-H--HHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-CCCceEEE
Q 039503 14 TFTKVFVGGLAWETPTEE-M--RRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-IDGRRANC 88 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~-L--~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i~G~~l~V 88 (259)
....++++++-..+..+- | ...|+.+-.+...+++++.. +..++++|+.|...+...++-..-++. |.-..|++
T Consensus 95 ~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~ 172 (290)
T KOG0226|consen 95 AVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL 172 (290)
T ss_pred ccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccccCcceee
Confidence 355677777766665554 3 67788888888888887753 666899999999888888777666643 54444443
No 221
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=20.84 E-value=1.7e+02 Score=26.38 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=12.9
Q ss_pred HHhhCCCEEEEEEeecC
Q 039503 35 YFEQFGDILEAVIISDK 51 (259)
Q Consensus 35 ~F~~~G~I~~v~i~~d~ 51 (259)
.|..||+|+.|+.-...
T Consensus 52 ~f~~~GdV~alkaEe~~ 68 (276)
T PF05929_consen 52 PFGNYGDVLALKAEEID 68 (276)
T ss_pred ccccccceEEEEEEEcc
Confidence 47889999998776543
No 222
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=20.61 E-value=2e+02 Score=28.04 Aligned_cols=48 Identities=15% Similarity=0.098 Sum_probs=34.7
Q ss_pred HHHHHHHHh----hCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCC
Q 039503 29 TEEMRRYFE----QFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP 77 (259)
Q Consensus 29 e~~L~~~F~----~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~ 77 (259)
.-+|..+|. .+|.|+++.+...+. -+.+...++.|.+.+++.+++..+
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~-p~~~~~~~~~f~~~~~a~~~~~~~ 254 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPK-PPVARVLLASFDSVEKAGLAVGDI 254 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcC-CcceEEEEEECCCHHHHHHHHHHH
Confidence 456777765 678899987765543 233557788999999999988764
No 223
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=20.57 E-value=1.3e+02 Score=26.95 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=33.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEE-eecCCCCC-----------cccEEEEEeCCHHHH
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVI-ISDKNTGK-----------SKGYGFVTFRDPESA 70 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i-~~d~~tg~-----------~kG~aFV~F~~~~~A 70 (259)
-.++++|++ |+...+++-|+.+.+++|--.-+.. .+|. .|+ ...||.|+|+...+.
T Consensus 156 h~nr~aY~~-lS~Rad~~lLe~fc~~~gy~~vvf~qT~de-~g~PiYHTNVmMaige~favic~~~i~~~ 223 (318)
T COG4874 156 HPNRTAYAG-LSQRADRELLEVFCEQIGYSRVVFFQTRDE-SGSPIYHTNVMMAIGEHFAVICDEAIPEY 223 (318)
T ss_pred ccchhhhhh-hhcccCHHHHHHHHHHcCCceeeeeeeccc-cCCcceehhHHHHhhhheeeeeccccccH
Confidence 346677775 7788888888888888884322222 1221 122 245888888755443
No 224
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=20.44 E-value=34 Score=24.04 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=18.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhh
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQ 38 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~ 38 (259)
...++||||.||..+-++.=+.++..
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~k~ 50 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWYKS 50 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHHHH
Confidence 36789999999988776654444443
No 225
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=20.11 E-value=1.3e+02 Score=28.13 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=26.4
Q ss_pred CCCCCCHHHHHHHHhh-CCCEEEEEEeec---CCCC--CcccEEEEEeCC
Q 039503 23 LAWETPTEEMRRYFEQ-FGDILEAVIISD---KNTG--KSKGYGFVTFRD 66 (259)
Q Consensus 23 Lp~~~te~~L~~~F~~-~G~I~~v~i~~d---~~tg--~~kG~aFV~F~~ 66 (259)
|...+++++|+++|++ |..-..|+|+.. +.+. ....||.|-|..
T Consensus 253 l~~~~t~~~i~~~y~~~Y~~epfVrv~~~~~~P~~k~V~GsN~cdIgf~~ 302 (349)
T COG0002 253 LKDLVTLEELHAAYEEFYAGEPFVRVVPEGGYPDTKAVAGSNFCDIGFAV 302 (349)
T ss_pred cCCCCCHHHHHHHHHHHhCCCCeEEEecCCCCCChhhhcCCcceEEEEEE
Confidence 4556899999999977 454455565542 1111 234566666653
No 226
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=20.08 E-value=2.8e+02 Score=18.41 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=30.1
Q ss_pred CHHHHHHHHhhCC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCC
Q 039503 28 PTEEMRRYFEQFG-DILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP 77 (259)
Q Consensus 28 te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~ 77 (259)
.-.+|-++|.+.| .|..+.+.... . ++.--+.+.+.+.+.++|+..
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~---~-~~~~rl~~~~~~~~~~~L~~~ 60 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTS---E-FGILRLIVSDPDKAKEALKEA 60 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecC---C-CCEEEEEECCHHHHHHHHHHC
Confidence 3366778887776 57887765432 2 455556677777777777664
Done!