Query 039503
Match_columns 259
No_of_seqs 343 out of 1980
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 17:45:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039503.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039503hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cqd_A RNA-binding region cont 99.9 1.4E-21 4.9E-26 151.0 15.2 88 8-95 10-97 (116)
2 4fxv_A ELAV-like protein 1; RN 99.9 3.7E-22 1.3E-26 151.1 10.0 80 14-93 18-98 (99)
3 1u6f_A Tcubp1, RNA-binding pro 99.9 1.8E-21 6.3E-26 154.9 13.7 89 10-98 37-126 (139)
4 1h2v_Z 20 kDa nuclear CAP bind 99.9 1.2E-21 4.2E-26 159.2 11.9 87 13-99 37-124 (156)
5 2dgs_A DAZ-associated protein 99.9 6E-21 2.1E-25 143.3 12.6 88 10-98 5-93 (99)
6 3s8s_A Histone-lysine N-methyl 99.9 2.1E-21 7.1E-26 149.8 10.2 84 12-95 3-87 (110)
7 1x5u_A Splicing factor 3B subu 99.9 8.9E-21 3.1E-25 143.8 12.8 90 8-97 8-98 (105)
8 2dnm_A SRP46 splicing factor; 99.8 3.8E-21 1.3E-25 145.4 10.4 91 8-98 6-97 (103)
9 2dgo_A Cytotoxic granule-assoc 99.8 2.3E-20 7.9E-25 143.8 15.0 90 9-98 9-99 (115)
10 2dnz_A Probable RNA-binding pr 99.8 8.6E-21 3E-25 141.2 12.0 84 13-96 3-87 (95)
11 1whw_A Hypothetical protein ri 99.8 1.3E-20 4.3E-25 141.4 12.4 87 11-97 4-91 (99)
12 1x5t_A Splicing factor 3B subu 99.8 7E-21 2.4E-25 141.9 10.7 85 13-97 3-89 (96)
13 2cq0_A Eukaryotic translation 99.8 1.1E-20 3.6E-25 143.0 11.7 88 9-96 9-97 (103)
14 2lxi_A RNA-binding protein 10; 99.8 1.7E-21 5.9E-26 145.0 7.1 82 15-96 1-85 (91)
15 2lkz_A RNA-binding protein 5; 99.8 8.8E-22 3E-26 148.2 5.5 83 11-93 5-94 (95)
16 2cpz_A CUG triplet repeat RNA- 99.8 7.8E-21 2.7E-25 146.6 10.7 89 10-98 20-109 (115)
17 2cph_A RNA binding motif prote 99.8 1.9E-20 6.5E-25 142.3 12.0 89 9-97 9-100 (107)
18 2d9p_A Polyadenylate-binding p 99.8 1.8E-20 6.2E-25 141.7 11.7 92 6-99 6-98 (103)
19 1x5s_A Cold-inducible RNA-bind 99.8 1.2E-20 4.1E-25 142.3 10.6 87 11-97 8-95 (102)
20 2dhg_A TRNA selenocysteine ass 99.8 1.7E-20 5.9E-25 141.9 11.5 87 10-97 4-93 (104)
21 2dng_A Eukaryotic translation 99.8 3.5E-20 1.2E-24 140.2 12.9 87 8-96 8-95 (103)
22 3s7r_A Heterogeneous nuclear r 99.8 1.6E-20 5.4E-25 137.7 10.6 82 10-91 6-87 (87)
23 1x4h_A RNA-binding protein 28; 99.8 2.4E-20 8.2E-25 142.6 12.0 88 11-98 11-105 (111)
24 2cqb_A Peptidyl-prolyl CIS-tra 99.8 7.5E-21 2.6E-25 143.4 8.7 89 10-98 7-96 (102)
25 2dgp_A Bruno-like 4, RNA bindi 99.8 1.6E-20 5.4E-25 142.6 10.4 88 9-96 7-98 (106)
26 1wi8_A EIF-4B, eukaryotic tran 99.8 2.7E-20 9.3E-25 141.1 11.7 89 7-97 7-97 (104)
27 2fy1_A RNA-binding motif prote 99.8 3.1E-20 1.1E-24 144.2 12.3 84 12-96 4-88 (116)
28 2rs2_A Musashi-1, RNA-binding 99.8 1.8E-20 6.2E-25 143.9 10.2 87 11-97 21-107 (109)
29 3q2s_C Cleavage and polyadenyl 99.8 1.1E-20 3.9E-25 163.5 10.2 80 14-93 67-149 (229)
30 2cpf_A RNA binding motif prote 99.8 2E-20 6.9E-25 140.1 10.2 85 13-97 3-91 (98)
31 3ex7_B RNA-binding protein 8A; 99.8 1.7E-20 5.9E-25 146.8 10.2 88 11-98 18-106 (126)
32 2dnh_A Bruno-like 5, RNA bindi 99.8 5.2E-20 1.8E-24 139.5 12.5 89 9-98 9-101 (105)
33 2div_A TRNA selenocysteine ass 99.8 3.7E-20 1.3E-24 138.8 11.1 86 10-95 4-95 (99)
34 1p27_B RNA-binding protein 8A; 99.8 3.2E-20 1.1E-24 140.9 10.9 84 12-95 20-104 (106)
35 2cqc_A Arginine/serine-rich sp 99.8 3.1E-20 1.1E-24 138.0 10.6 86 8-93 8-94 (95)
36 1x4b_A Heterogeneous nuclear r 99.8 1.9E-20 6.5E-25 144.7 9.7 84 12-96 24-108 (116)
37 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.4E-20 8.1E-25 136.4 9.4 82 13-94 4-86 (87)
38 2do4_A Squamous cell carcinoma 99.8 5.2E-20 1.8E-24 138.4 11.4 84 11-95 13-97 (100)
39 2dh8_A DAZ-associated protein 99.8 2.8E-20 9.6E-25 141.1 10.0 88 9-97 10-98 (105)
40 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.3E-20 7.7E-25 136.0 8.9 81 12-92 4-85 (85)
41 2cqg_A TDP-43, TAR DNA-binding 99.8 1E-19 3.5E-24 137.5 12.9 86 10-96 10-95 (103)
42 3md1_A Nuclear and cytoplasmic 99.8 3.9E-20 1.3E-24 134.1 10.1 79 16-94 2-81 (83)
43 2khc_A Testis-specific RNP-typ 99.8 2.4E-20 8.2E-25 144.4 9.5 83 10-92 35-118 (118)
44 4f25_A Polyadenylate-binding p 99.8 2.2E-20 7.7E-25 144.6 9.3 83 14-98 4-87 (115)
45 3p5t_L Cleavage and polyadenyl 99.8 6.4E-21 2.2E-25 141.1 5.7 80 16-95 2-84 (90)
46 1oo0_B CG8781-PA, drosophila Y 99.8 3.5E-20 1.2E-24 141.7 10.0 86 11-96 22-108 (110)
47 2cpe_A RNA-binding protein EWS 99.8 3.9E-20 1.3E-24 142.2 10.2 87 10-96 10-105 (113)
48 2e5h_A Zinc finger CCHC-type a 99.8 3.5E-20 1.2E-24 137.6 9.5 83 10-92 11-94 (94)
49 2do0_A HnRNP M, heterogeneous 99.8 1.6E-19 5.4E-24 138.8 13.3 87 10-97 10-97 (114)
50 2kxn_B Transformer-2 protein h 99.8 2.9E-20 1E-24 147.2 9.3 87 10-96 41-128 (129)
51 1x4a_A Splicing factor, argini 99.8 1E-19 3.5E-24 139.0 11.8 84 10-96 17-101 (109)
52 2la6_A RNA-binding protein FUS 99.8 6.8E-20 2.3E-24 137.7 10.4 83 10-92 8-99 (99)
53 2x1f_A MRNA 3'-END-processing 99.8 4.8E-20 1.6E-24 137.8 9.4 81 15-95 2-83 (96)
54 3ucg_A Polyadenylate-binding p 99.8 4.1E-20 1.4E-24 135.7 8.9 81 13-94 4-85 (89)
55 2dis_A Unnamed protein product 99.8 1.8E-19 6.2E-24 137.4 12.8 86 12-97 5-95 (109)
56 2m2b_A RNA-binding protein 10; 99.8 1.7E-20 5.7E-25 148.5 7.2 87 10-97 18-111 (131)
57 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.7E-19 5.9E-24 136.3 12.1 87 10-98 10-97 (103)
58 2cq3_A RNA-binding protein 9; 99.8 2.2E-19 7.6E-24 135.7 12.4 88 9-98 9-97 (103)
59 3ns6_A Eukaryotic translation 99.8 1.9E-20 6.5E-25 141.5 6.4 83 12-94 3-93 (100)
60 4a8x_A RNA-binding protein wit 99.8 5.3E-20 1.8E-24 134.7 8.4 83 14-96 3-87 (88)
61 2cqp_A RNA-binding protein 12; 99.8 4.4E-20 1.5E-24 138.2 8.2 85 9-93 9-94 (98)
62 3pgw_S U1-70K; protein-RNA com 99.8 2.2E-19 7.4E-24 169.1 14.8 86 11-96 98-184 (437)
63 1uaw_A Mouse-musashi-1; RNP-ty 99.8 3.2E-20 1.1E-24 132.7 6.9 76 16-91 1-76 (77)
64 2jrs_A RNA-binding protein 39; 99.8 9.8E-20 3.4E-24 139.6 10.0 85 10-94 21-106 (108)
65 3ulh_A THO complex subunit 4; 99.8 1.1E-19 3.7E-24 138.2 10.0 81 11-92 25-106 (107)
66 3n9u_C Cleavage and polyadenyl 99.8 9.6E-20 3.3E-24 148.9 10.4 80 14-93 54-136 (156)
67 2ywk_A Putative RNA-binding pr 99.8 1.1E-19 3.6E-24 135.2 9.5 83 10-93 11-94 (95)
68 2jwn_A Embryonic polyadenylate 99.8 1.9E-19 6.6E-24 140.5 11.2 82 14-96 35-117 (124)
69 1wez_A HnRNP H', FTP-3, hetero 99.8 1.9E-19 6.5E-24 136.8 10.8 83 9-94 9-92 (102)
70 1s79_A Lupus LA protein; RRM, 99.8 1.6E-19 5.6E-24 137.5 10.4 81 11-93 7-88 (103)
71 2cq4_A RNA binding motif prote 99.8 1.7E-20 5.9E-25 144.5 4.8 83 12-95 22-105 (114)
72 2lea_A Serine/arginine-rich sp 99.8 7E-20 2.4E-24 146.0 8.4 89 10-98 42-131 (135)
73 2kn4_A Immunoglobulin G-bindin 99.8 2.7E-19 9.1E-24 145.2 12.0 88 11-98 66-154 (158)
74 2dgv_A HnRNP M, heterogeneous 99.8 2.1E-19 7.1E-24 132.8 10.0 84 11-96 4-88 (92)
75 1x4c_A Splicing factor, argini 99.8 3.7E-19 1.3E-23 136.0 11.6 80 12-98 12-97 (108)
76 1p1t_A Cleavage stimulation fa 99.8 7.2E-20 2.5E-24 138.3 7.1 85 12-96 5-90 (104)
77 2dgu_A Heterogeneous nuclear r 99.8 5.2E-19 1.8E-23 133.8 11.6 82 11-100 7-89 (103)
78 2mss_A Protein (musashi1); RNA 99.8 1.1E-19 3.8E-24 129.5 7.3 74 17-91 1-75 (75)
79 2dgw_A Probable RNA-binding pr 99.8 4.9E-19 1.7E-23 130.8 11.0 83 9-94 4-87 (91)
80 2dgx_A KIAA0430 protein; RRM d 99.8 2.7E-19 9.4E-24 133.9 9.7 81 12-95 6-91 (96)
81 1sjq_A Polypyrimidine tract-bi 99.8 1.5E-19 5.2E-24 138.4 8.1 80 11-96 12-94 (105)
82 1wg5_A Heterogeneous nuclear r 99.8 7.1E-19 2.4E-23 133.6 11.8 84 11-95 11-95 (104)
83 2ek1_A RNA-binding protein 12; 99.8 5.8E-20 2E-24 136.7 5.2 83 11-93 11-94 (95)
84 1iqt_A AUF1, heterogeneous nuc 99.8 1E-19 3.5E-24 129.5 6.3 75 17-91 1-75 (75)
85 2kt5_A RNA and export factor-b 99.8 7.1E-19 2.4E-23 137.4 11.6 84 11-95 31-115 (124)
86 1x4e_A RNA binding motif, sing 99.8 5.6E-20 1.9E-24 134.1 4.8 80 13-92 3-83 (85)
87 2cpy_A RNA-binding protein 12; 99.8 2.4E-19 8.4E-24 138.4 8.4 83 11-95 11-95 (114)
88 2fc8_A NCL protein; structure 99.8 4.8E-19 1.6E-23 133.4 9.8 86 8-96 8-94 (102)
89 1rk8_A CG8781-PA, CG8781-PA pr 99.8 4.3E-19 1.5E-23 145.7 10.2 88 12-99 69-157 (165)
90 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.2E-19 4.2E-24 136.8 6.4 83 10-94 14-98 (100)
91 2ki2_A SS-DNA binding protein 99.8 8E-20 2.7E-24 134.7 5.2 80 15-95 1-81 (90)
92 1wel_A RNA-binding protein 12; 99.8 1.7E-19 5.9E-24 141.2 7.2 83 10-93 20-103 (124)
93 2fc9_A NCL protein; structure 99.8 8.5E-19 2.9E-23 132.0 10.5 82 10-95 10-92 (101)
94 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 6.2E-19 2.1E-23 139.8 10.2 81 11-91 59-140 (140)
95 2cpx_A Hypothetical protein FL 99.8 1.9E-19 6.3E-24 138.6 6.8 88 11-98 21-109 (115)
96 2dnq_A RNA-binding protein 4B; 99.8 1.2E-18 4.2E-23 128.5 10.9 78 11-96 4-82 (90)
97 2hgn_A Heterogeneous nuclear r 99.8 1.2E-19 4.1E-24 145.7 5.4 82 11-95 42-124 (139)
98 2cpi_A CCR4-NOT transcription 99.8 5E-19 1.7E-23 136.0 8.7 86 10-95 10-102 (111)
99 3r27_A HnRNP L, heterogeneous 99.8 6.4E-19 2.2E-23 133.7 8.7 81 8-94 14-97 (100)
100 1wex_A Hypothetical protein (r 99.8 2.7E-18 9.1E-23 131.1 11.8 79 12-96 12-93 (104)
101 1fj7_A Nucleolin RBD1, protein 99.8 1.3E-19 4.5E-24 136.4 4.3 83 12-96 14-97 (101)
102 2lcw_A RNA-binding protein FUS 99.6 2.2E-20 7.7E-25 144.4 0.0 85 11-95 3-96 (116)
103 2cq1_A PTB-like protein L; RRM 99.8 2.2E-18 7.7E-23 130.9 11.1 83 9-97 9-94 (101)
104 2err_A Ataxin-2-binding protei 99.8 5.7E-19 1.9E-23 135.4 7.7 83 10-94 24-107 (109)
105 2ad9_A Polypyrimidine tract-bi 99.8 1.5E-18 5.1E-23 135.7 10.1 80 12-97 28-110 (119)
106 1x5o_A RNA binding motif, sing 99.8 1.6E-18 5.4E-23 133.3 10.0 83 11-94 21-112 (114)
107 2db1_A Heterogeneous nuclear r 99.8 7.2E-19 2.5E-23 136.8 8.1 82 11-94 13-98 (118)
108 1x4d_A Matrin 3; structural ge 99.8 7.9E-19 2.7E-23 133.7 7.9 78 12-95 12-93 (102)
109 2ytc_A PRE-mRNA-splicing facto 99.8 3.3E-18 1.1E-22 124.5 10.6 78 9-92 6-85 (85)
110 2nlw_A Eukaryotic translation 99.8 1.6E-18 5.5E-23 131.9 9.3 83 10-94 10-100 (105)
111 2hgl_A HNRPF protein, heteroge 99.8 8.5E-19 2.9E-23 140.2 7.9 80 12-93 41-124 (136)
112 2hvz_A Splicing factor, argini 99.8 1.5E-18 5E-23 130.7 8.6 76 16-96 1-77 (101)
113 1x4g_A Nucleolysin TIAR; struc 99.8 2.7E-18 9.1E-23 131.2 10.1 80 11-96 21-101 (109)
114 2dgt_A RNA-binding protein 30; 99.8 4.4E-18 1.5E-22 126.0 10.3 79 10-96 5-84 (92)
115 2lmi_A GRSF-1, G-rich sequence 99.8 7.9E-19 2.7E-23 134.1 6.3 84 9-94 5-92 (107)
116 2e5j_A Methenyltetrahydrofolat 99.8 3.2E-18 1.1E-22 128.1 9.5 81 10-95 14-95 (97)
117 2dnp_A RNA-binding protein 14; 99.8 3.9E-18 1.3E-22 125.8 9.8 79 10-96 4-83 (90)
118 1why_A Hypothetical protein ri 99.8 3E-18 1E-22 128.1 9.3 78 12-95 14-94 (97)
119 2krb_A Eukaryotic translation 99.8 1.5E-18 5.1E-23 125.7 7.3 73 15-89 1-81 (81)
120 2hgm_A HNRPF protein, heteroge 99.8 2.3E-18 7.9E-23 136.0 8.7 79 13-93 40-120 (126)
121 2xs2_A Deleted in azoospermia- 99.7 1.8E-18 6.3E-23 130.3 7.7 83 11-95 5-87 (102)
122 2cpj_A Non-POU domain-containi 99.7 5.8E-18 2E-22 127.0 10.3 80 10-95 10-90 (99)
123 2jvo_A Nucleolar protein 3; nu 99.7 2.3E-18 7.8E-23 132.0 8.1 82 7-96 23-105 (108)
124 2a3j_A U1 small nuclear ribonu 99.7 6.5E-18 2.2E-22 133.5 10.4 81 12-95 26-111 (127)
125 1wf1_A RNA-binding protein RAL 99.7 6.5E-18 2.2E-22 129.3 10.1 76 13-96 25-102 (110)
126 2e5g_A U6 snRNA-specific termi 99.7 1.2E-17 4.1E-22 124.2 11.3 78 12-95 5-83 (94)
127 2cpd_A Apobec-1 stimulating pr 99.7 1.4E-17 4.9E-22 124.9 11.6 77 11-95 11-90 (99)
128 2jvr_A Nucleolar protein 3; RN 99.7 2.1E-18 7.1E-23 133.3 7.1 78 13-94 26-105 (111)
129 1x4f_A Matrin 3; structural ge 99.7 2.6E-18 9.1E-23 133.0 7.7 80 11-96 21-104 (112)
130 3beg_B Splicing factor, argini 99.7 3E-18 1E-22 132.6 7.9 76 13-95 14-95 (115)
131 2wbr_A GW182, gawky, LD47780P; 99.7 3E-18 1E-22 126.6 7.3 72 15-92 7-79 (89)
132 4f02_A Polyadenylate-binding p 99.7 5.5E-18 1.9E-22 144.1 10.0 84 11-94 11-95 (213)
133 2cqh_A IGF-II mRNA-binding pro 99.7 3.2E-18 1.1E-22 126.9 7.4 79 11-96 4-85 (93)
134 2kvi_A Nuclear polyadenylated 99.7 3.5E-18 1.2E-22 127.7 7.7 77 12-96 7-85 (96)
135 2la4_A Nuclear and cytoplasmic 99.7 2.6E-18 8.8E-23 129.3 7.0 76 12-93 24-100 (101)
136 2dnn_A RNA-binding protein 12; 99.7 4.2E-18 1.4E-22 131.1 8.2 77 14-93 15-92 (109)
137 2dha_A FLJ20171 protein; RRM d 99.7 2.8E-18 9.5E-23 135.0 7.1 80 13-93 21-104 (123)
138 1l3k_A Heterogeneous nuclear r 99.7 9.9E-18 3.4E-22 139.1 10.7 86 13-98 102-187 (196)
139 2f3j_A RNA and export factor b 99.7 1E-17 3.4E-22 139.5 10.4 81 13-94 86-167 (177)
140 1fjc_A Nucleolin RBD2, protein 99.7 4.7E-18 1.6E-22 126.6 7.0 81 10-95 11-92 (96)
141 2i2y_A Fusion protein consists 99.7 1.4E-17 4.9E-22 134.1 9.7 81 10-95 68-149 (150)
142 3lqv_A PRE-mRNA branch site pr 99.7 1.8E-17 6.2E-22 127.5 9.8 81 12-95 5-86 (115)
143 1l3k_A Heterogeneous nuclear r 99.7 2.2E-17 7.6E-22 137.0 11.0 85 10-94 8-92 (196)
144 1x5p_A Negative elongation fac 99.7 5.5E-17 1.9E-21 121.3 12.0 78 11-96 11-89 (97)
145 2xnq_A Nuclear polyadenylated 99.7 2E-17 6.9E-22 124.2 9.6 76 11-94 18-95 (97)
146 1nu4_A U1A RNA binding domain; 99.7 5.3E-18 1.8E-22 126.4 6.3 81 12-95 5-90 (97)
147 1sjr_A Polypyrimidine tract-bi 99.7 2.9E-17 9.9E-22 135.0 11.2 80 12-95 43-125 (164)
148 1wf0_A TDP-43, TAR DNA-binding 99.7 6.6E-18 2.2E-22 124.1 6.7 78 13-96 3-80 (88)
149 3d2w_A TAR DNA-binding protein 99.7 1.2E-17 4.2E-22 123.6 8.1 79 11-95 7-85 (89)
150 2j8a_A Histone-lysine N-methyl 99.7 1E-17 3.4E-22 132.1 7.9 79 16-94 3-96 (136)
151 2dnl_A Cytoplasmic polyadenyla 99.7 4.7E-18 1.6E-22 131.1 5.7 80 12-93 5-87 (114)
152 1whx_A Hypothetical protein ri 99.7 1.5E-17 5.3E-22 127.9 8.3 78 12-95 7-85 (111)
153 3md3_A Nuclear and cytoplasmic 99.7 4.4E-17 1.5E-21 131.2 10.9 82 11-92 83-165 (166)
154 3egn_A RNA-binding protein 40; 99.7 2.3E-18 7.8E-23 137.8 3.1 89 11-99 41-135 (143)
155 2qfj_A FBP-interacting repress 99.7 4.8E-17 1.6E-21 137.0 11.1 82 14-95 124-206 (216)
156 1fxl_A Paraneoplastic encephal 99.7 4.1E-17 1.4E-21 131.5 10.2 80 15-94 2-82 (167)
157 2e44_A Insulin-like growth fac 99.7 3.2E-17 1.1E-21 122.0 8.8 80 11-94 11-92 (96)
158 1b7f_A Protein (SXL-lethal pro 99.7 3.3E-17 1.1E-21 132.5 9.0 82 14-95 2-84 (168)
159 2yh0_A Splicing factor U2AF 65 99.7 9.2E-17 3.2E-21 133.4 11.3 83 13-95 112-195 (198)
160 1wg1_A KIAA1579 protein, homol 99.7 2.6E-17 8.8E-22 121.1 6.2 75 13-94 3-78 (88)
161 2g4b_A Splicing factor U2AF 65 99.7 8.9E-17 3.1E-21 130.6 9.7 80 13-92 92-172 (172)
162 2cjk_A Nuclear polyadenylated 99.7 5.5E-17 1.9E-21 131.3 8.2 80 14-94 86-166 (167)
163 2qfj_A FBP-interacting repress 99.7 9.3E-17 3.2E-21 135.2 9.0 81 14-94 27-108 (216)
164 2cq2_A Hypothetical protein LO 99.7 1.3E-16 4.6E-21 123.7 8.6 77 11-93 21-105 (114)
165 4f02_A Polyadenylate-binding p 99.7 1.2E-16 4.1E-21 135.8 8.9 80 14-95 102-182 (213)
166 2cjk_A Nuclear polyadenylated 99.7 1.1E-16 3.8E-21 129.5 8.3 79 14-93 2-80 (167)
167 2voo_A Lupus LA protein; RNA-b 99.7 2.6E-16 9E-21 132.6 10.7 80 14-94 108-187 (193)
168 3zzy_A Polypyrimidine tract-bi 99.7 2.4E-16 8.3E-21 124.9 9.7 78 13-95 26-107 (130)
169 1b7f_A Protein (SXL-lethal pro 99.7 3.9E-16 1.3E-20 126.2 10.6 80 12-91 86-168 (168)
170 2e5i_A Heterogeneous nuclear r 99.7 5.2E-16 1.8E-20 122.1 10.9 76 14-95 24-103 (124)
171 2hzc_A Splicing factor U2AF 65 99.7 2.7E-16 9.3E-21 114.6 8.7 71 13-90 4-86 (87)
172 3md3_A Nuclear and cytoplasmic 99.7 3.2E-16 1.1E-20 126.1 9.2 79 16-95 1-80 (166)
173 2bz2_A Negative elongation fac 99.6 2.8E-16 9.5E-21 122.9 7.9 77 12-96 36-113 (121)
174 3nmr_A Cugbp ELAV-like family 99.6 5.1E-16 1.7E-20 126.1 9.7 82 14-95 2-89 (175)
175 1fxl_A Paraneoplastic encephal 99.6 5.4E-16 1.9E-20 124.9 9.8 80 12-91 85-167 (167)
176 3tyt_A Heterogeneous nuclear r 99.6 3.2E-16 1.1E-20 133.1 8.6 77 14-95 3-81 (205)
177 3pgw_A U1-A; protein-RNA compl 99.6 1E-15 3.5E-20 134.6 10.9 82 11-95 5-91 (282)
178 3nmr_A Cugbp ELAV-like family 99.6 1E-15 3.4E-20 124.4 9.7 79 13-92 93-175 (175)
179 2diu_A KIAA0430 protein; struc 99.6 1.3E-15 4.4E-20 113.7 9.4 73 15-97 8-87 (96)
180 2pe8_A Splicing factor 45; RRM 99.6 1.9E-15 6.5E-20 115.4 9.3 82 12-93 5-93 (105)
181 3u1l_A PRE-mRNA-splicing facto 99.6 8.6E-16 3E-20 133.7 7.5 78 12-95 131-230 (240)
182 3pgw_A U1-A; protein-RNA compl 99.6 4.8E-15 1.6E-19 130.3 11.3 77 11-92 203-281 (282)
183 1fje_B Nucleolin RBD12, protei 99.6 2.7E-15 9.1E-20 122.5 8.1 79 11-94 95-174 (175)
184 2adc_A Polypyrimidine tract-bi 99.6 5.6E-15 1.9E-19 126.8 10.2 79 12-95 31-111 (229)
185 3smz_A Protein raver-1, ribonu 99.6 9E-15 3.1E-19 128.7 10.9 82 14-95 94-176 (284)
186 2ghp_A U4/U6 snRNA-associated 99.6 4.4E-15 1.5E-19 131.2 8.9 82 12-94 207-291 (292)
187 2dit_A HIV TAT specific factor 99.6 2.2E-14 7.5E-19 110.1 11.2 83 9-95 9-103 (112)
188 1fje_B Nucleolin RBD12, protei 99.6 1.3E-15 4.3E-20 124.4 3.4 84 10-95 8-92 (175)
189 3smz_A Protein raver-1, ribonu 99.5 6.1E-15 2.1E-19 129.8 7.9 84 12-96 181-266 (284)
190 1qm9_A Polypyrimidine tract-bi 99.5 6.5E-15 2.2E-19 122.8 7.4 77 14-95 2-80 (198)
191 2d9o_A DNAJ (HSP40) homolog, s 99.5 9.4E-14 3.2E-18 105.2 13.1 79 12-96 7-92 (100)
192 3sde_A Paraspeckle component 1 99.5 1.8E-14 6.2E-19 126.0 8.1 81 14-95 95-180 (261)
193 3sde_A Paraspeckle component 1 99.5 3.2E-14 1.1E-18 124.5 9.2 76 12-93 19-95 (261)
194 3tyt_A Heterogeneous nuclear r 99.5 1.7E-14 5.7E-19 122.5 6.2 76 14-91 122-204 (205)
195 3v4m_A Splicing factor U2AF 65 99.5 3.4E-14 1.2E-18 108.4 7.2 82 12-93 2-96 (105)
196 2g4b_A Splicing factor U2AF 65 99.5 8.1E-14 2.8E-18 113.0 9.8 74 14-94 3-88 (172)
197 2adc_A Polypyrimidine tract-bi 99.5 5.5E-14 1.9E-18 120.5 9.2 75 14-93 150-227 (229)
198 1qm9_A Polypyrimidine tract-bi 99.5 3.3E-14 1.1E-18 118.5 7.3 75 14-93 119-196 (198)
199 2yh0_A Splicing factor U2AF 65 99.5 6.8E-14 2.3E-18 116.0 9.0 75 14-95 3-89 (198)
200 1jmt_A Splicing factor U2AF 35 99.5 8.4E-15 2.9E-19 111.5 2.7 71 20-91 20-103 (104)
201 2ghp_A U4/U6 snRNA-associated 99.5 4.3E-14 1.5E-18 124.8 7.3 81 14-95 116-198 (292)
202 3ue2_A Poly(U)-binding-splicin 99.4 1.2E-13 4.3E-18 107.5 7.2 80 14-93 19-108 (118)
203 3tht_A Alkylated DNA repair pr 99.4 8.5E-13 2.9E-17 120.4 8.8 77 10-92 13-97 (345)
204 3s6e_A RNA-binding protein 39; 99.3 9.6E-12 3.3E-16 96.2 7.0 76 14-93 6-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.2 2E-11 6.8E-16 95.3 8.7 81 6-92 9-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.1 1.4E-10 4.9E-15 85.6 7.7 71 15-94 7-86 (91)
207 3dxb_A Thioredoxin N-terminall 98.9 1.7E-09 5.7E-14 92.0 7.6 68 26-93 140-212 (222)
208 1ufw_A Synaptojanin 2; RNP dom 98.9 1.1E-09 3.8E-14 81.3 5.1 71 14-93 14-94 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.4 7E-07 2.4E-11 67.8 7.0 71 14-90 20-96 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.2 2.3E-05 7.9E-10 58.8 12.0 76 11-94 4-84 (104)
211 1wey_A Calcipressin 1; structu 97.7 0.00011 3.6E-09 55.3 6.6 75 13-93 3-83 (104)
212 1whv_A Poly(A)-specific ribonu 97.4 0.00039 1.3E-08 51.6 6.9 56 13-77 14-69 (100)
213 1uw4_A UPF3X; nonsense mediate 97.2 0.0016 5.5E-08 47.8 8.4 77 16-92 2-86 (91)
214 3ctr_A Poly(A)-specific ribonu 97.2 0.00054 1.8E-08 51.0 5.3 53 16-77 7-59 (101)
215 1wwh_A Nucleoporin 35, nucleop 96.9 0.0055 1.9E-07 47.1 8.8 71 14-91 23-94 (119)
216 3pq1_A Poly(A) RNA polymerase; 96.3 0.0016 5.5E-08 61.2 2.9 58 14-77 52-109 (464)
217 2l08_A Regulator of nonsense t 95.9 0.01 3.4E-07 44.0 5.0 78 15-92 9-94 (97)
218 3p3d_A Nucleoporin 53; structu 95.6 0.012 4.1E-07 45.9 4.5 77 15-92 7-97 (132)
219 2kn4_A Immunoglobulin G-bindin 95.5 0.0062 2.1E-07 48.0 2.6 33 44-78 2-34 (158)
220 2i2y_A Fusion protein consists 93.6 0.029 1E-06 43.8 2.2 39 54-93 10-50 (150)
221 3d45_A Poly(A)-specific ribonu 91.4 0.35 1.2E-05 45.9 6.8 56 14-78 439-494 (507)
222 2g0c_A ATP-dependent RNA helic 80.2 2.8 9.5E-05 28.6 4.8 67 17-92 2-75 (76)
223 3fry_A Probable copper-exporti 58.8 19 0.00065 23.4 5.1 56 15-77 6-61 (73)
224 2cu1_A Mitogen-activated prote 51.9 42 0.0014 24.5 6.1 63 23-93 24-87 (103)
225 4eyt_A Telomerase associated p 47.7 75 0.0026 22.8 7.6 56 14-77 11-66 (129)
226 3lpe_A Putative transcription 47.7 54 0.0019 23.1 6.2 48 27-79 20-72 (92)
227 3j21_T 50S ribosomal protein L 47.5 41 0.0014 23.8 5.4 53 20-75 27-81 (86)
228 2lfv_A Protein DAMX; cell divi 50.9 4.5 0.00016 29.9 0.0 55 26-81 33-88 (106)
229 1q8l_A Copper-transporting ATP 44.2 65 0.0022 21.1 7.3 62 10-77 5-70 (84)
230 3bb5_A Stress responsive alpha 43.5 96 0.0033 22.8 7.5 64 12-75 18-92 (121)
231 3ts2_A Protein LIN-28 homolog 38.1 4.5 0.00016 31.7 -1.0 28 30-65 2-29 (148)
232 3swz_A Steroid 17-alpha-hydrox 35.3 64 0.0022 28.9 6.2 59 17-84 16-78 (494)
233 3bgu_A Ferredoxin-like protein 33.9 1.4E+02 0.0046 21.8 6.9 61 14-75 21-91 (116)
234 4e8u_A Putative uncharacterize 33.8 1.3E+02 0.0043 24.1 6.9 55 17-74 14-80 (172)
235 2npt_B Mitogen-activated prote 33.4 82 0.0028 22.8 5.1 58 23-88 36-94 (100)
236 2jrh_A Mitogen-activated prote 31.7 68 0.0023 22.9 4.4 62 23-92 20-82 (94)
237 2i9x_A Putative septation prot 31.4 61 0.0021 23.0 4.2 26 41-66 5-30 (87)
238 3h7h_B Transcription elongatio 31.0 1E+02 0.0034 22.5 5.5 35 41-80 40-74 (106)
239 2qyc_A Ferredoxin-like protein 31.0 1.4E+02 0.0047 21.0 6.9 57 18-75 8-74 (103)
240 2kt2_A Mercuric reductase; nme 30.3 94 0.0032 18.9 6.8 55 17-77 3-60 (69)
241 2g9o_A Copper-transporting ATP 29.2 1.1E+02 0.0037 20.5 5.3 56 16-77 5-64 (90)
242 3dxs_X Copper-transporting ATP 29.0 1.1E+02 0.0038 19.2 6.3 56 16-77 4-63 (74)
243 2cfx_A HTH-type transcriptiona 28.4 1.6E+02 0.0055 21.8 6.6 47 29-79 78-124 (144)
244 2l3m_A Copper-ION-binding prot 28.4 1E+02 0.0035 18.7 5.3 57 15-77 6-66 (71)
245 4a4j_A Pacszia, cation-transpo 28.1 95 0.0032 19.2 4.6 56 16-77 4-62 (69)
246 2ia9_A Putative septation prot 27.5 75 0.0026 23.1 4.2 26 41-66 5-30 (100)
247 1vq8_S 50S ribosomal protein L 27.4 1.6E+02 0.0054 20.6 5.8 53 19-74 25-79 (85)
248 1cpz_A Protein (COPZ); copper 26.8 1.1E+02 0.0036 18.4 8.2 55 17-77 3-61 (68)
249 2c60_A Human mitogen-activated 26.7 65 0.0022 23.6 3.6 59 23-89 47-106 (111)
250 3iz5_X 60S ribosomal protein L 26.5 66 0.0023 25.3 3.9 53 20-75 93-147 (152)
251 3iot_A Maltose-binding protein 26.5 14 0.00047 33.4 0.0 20 59-78 262-285 (449)
252 2i9z_A Putative septation prot 26.4 81 0.0028 23.1 4.2 26 41-66 5-30 (105)
253 2ofg_X Zinc-transporting ATPas 25.7 1.7E+02 0.0059 20.4 7.7 59 14-78 8-70 (111)
254 1osd_A MERP, hypothetical prot 25.7 1.2E+02 0.004 18.5 6.7 56 16-77 5-64 (72)
255 4a17_R RPL23A, 60S ribosomal p 25.5 1.1E+02 0.0039 23.8 5.1 49 22-73 93-143 (150)
256 3tbg_A Cytochrome P450 2D6; mo 24.8 61 0.0021 28.7 4.1 55 19-82 20-77 (479)
257 3u5e_X 60S ribosomal protein L 24.8 1.3E+02 0.0044 23.3 5.3 52 19-73 82-135 (142)
258 3mfb_A Uncharacterized protein 24.6 1.1E+02 0.0039 24.0 5.0 37 27-63 3-42 (157)
259 3fut_A Dimethyladenosine trans 24.4 65 0.0022 27.4 3.9 33 16-49 111-143 (271)
260 1fme_A FSD-EY peptide; beta-BE 24.2 46 0.0016 17.9 1.8 13 27-39 13-25 (28)
261 2e5p_A Protein PHF1, PHD finge 24.1 39 0.0013 22.8 1.9 12 56-67 36-47 (68)
262 1xn9_A 30S ribosomal protein S 23.6 1.2E+02 0.0042 21.9 4.7 48 25-73 28-80 (101)
263 1ywx_A 30S ribosomal protein S 23.3 1.4E+02 0.0049 21.6 5.0 47 25-72 28-79 (102)
264 1yg0_A COP associated protein; 23.3 1.2E+02 0.0042 17.9 5.9 54 17-76 4-60 (66)
265 2gu3_A YPMB protein; APC1927, 23.2 1.2E+02 0.004 23.1 4.8 47 20-66 68-127 (136)
266 2cvi_A 75AA long hypothetical 22.8 1.7E+02 0.0059 19.4 6.9 52 28-83 14-65 (83)
267 3bde_A MLL5499 protein; stress 22.5 2.3E+02 0.0079 20.7 7.1 60 14-73 20-87 (120)
268 1q4r_A Protein AT3G17210; cent 22.5 2.1E+02 0.0073 20.3 6.5 61 15-75 11-82 (112)
269 3cjk_B Copper-transporting ATP 22.3 1.5E+02 0.005 18.3 6.0 56 16-77 4-63 (75)
270 3bn7_A Ferredoxin-like protein 22.0 1.9E+02 0.0065 21.1 5.7 61 14-74 20-93 (120)
271 1wih_A Mitochondrial ribosome 22.0 1.4E+02 0.0048 20.9 4.6 39 60-98 36-82 (84)
272 2zbc_A 83AA long hypothetical 21.7 1.7E+02 0.006 19.0 5.9 44 28-75 14-57 (83)
273 2v94_A RPS24, 30S ribosomal pr 21.5 1.4E+02 0.0049 21.8 4.8 47 25-72 37-88 (107)
274 2djw_A Probable transcriptiona 20.4 2.1E+02 0.007 19.3 6.4 45 28-76 14-58 (92)
275 2m0o_A PHD finger protein 1; t 20.1 51 0.0018 22.8 1.9 12 56-67 53-64 (79)
276 1aw0_A Menkes copper-transport 20.1 1.3E+02 0.0045 18.2 4.0 56 16-77 5-64 (72)
No 1
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.4e-21 Score=151.01 Aligned_cols=88 Identities=60% Similarity=1.060 Sum_probs=82.4
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEE
Q 039503 8 SQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRAN 87 (259)
Q Consensus 8 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~ 87 (259)
....+...++|||+||+++++|++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++++|+|++|+
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~ 89 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKAN 89 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECE
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEE
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEEcccCC
Q 039503 88 CNIASLGR 95 (259)
Q Consensus 88 V~~a~~~~ 95 (259)
|++++...
T Consensus 90 V~~a~~~~ 97 (116)
T 2cqd_A 90 VNLAYLGA 97 (116)
T ss_dssp EEESTTTC
T ss_pred EEEcccCC
Confidence 99997653
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=3.7e-22 Score=151.06 Aligned_cols=80 Identities=29% Similarity=0.453 Sum_probs=76.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEcc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIAS 92 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~ 92 (259)
+.++|||+||+.++||++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.||+ .|+|++|+|++|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 467899999999999999999999999999999999999999999999999999999999999995 5999999999996
Q ss_pred c
Q 039503 93 L 93 (259)
Q Consensus 93 ~ 93 (259)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 3
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.87 E-value=1.8e-21 Score=154.93 Aligned_cols=89 Identities=29% Similarity=0.490 Sum_probs=81.5
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V 88 (259)
..+...++|||+||+++++|++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.+|+ .|+|++|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3455678999999999999999999999999999999999999999999999999999999999999996 599999999
Q ss_pred EEcccCCCCC
Q 039503 89 NIASLGRPRP 98 (259)
Q Consensus 89 ~~a~~~~~~~ 98 (259)
++++.+..+.
T Consensus 117 ~~a~~~~~~~ 126 (139)
T 1u6f_A 117 ALAASGHQRP 126 (139)
T ss_dssp EESSCCCCCC
T ss_pred EECCCCCCCC
Confidence 9998765443
No 4
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.86 E-value=1.2e-21 Score=159.17 Aligned_cols=87 Identities=22% Similarity=0.292 Sum_probs=80.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEc
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIA 91 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a 91 (259)
...++|||+||+++++|++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.||+ .|+|++|+|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4678999999999999999999999999999999999999999999999999999999999999985 599999999999
Q ss_pred ccCCCCCC
Q 039503 92 SLGRPRPS 99 (259)
Q Consensus 92 ~~~~~~~~ 99 (259)
+..+.+..
T Consensus 117 ~~~~~~~~ 124 (156)
T 1h2v_Z 117 AGFKEGRQ 124 (156)
T ss_dssp SCCCTTCC
T ss_pred CCCCCcCC
Confidence 87655443
No 5
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=6e-21 Score=143.34 Aligned_cols=88 Identities=30% Similarity=0.580 Sum_probs=80.4
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCceEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVIDGRRANC 88 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~~l~V 88 (259)
..+...++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+ ++ ..|+|++|+|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 455678999999999999999999999999999999999999999999999999999999999999 77 4699999999
Q ss_pred EEcccCCCCC
Q 039503 89 NIASLGRPRP 98 (259)
Q Consensus 89 ~~a~~~~~~~ 98 (259)
++++.+..+.
T Consensus 84 ~~a~~~~~~~ 93 (99)
T 2dgs_A 84 KRAEPRDSKS 93 (99)
T ss_dssp EECCCCCCCC
T ss_pred EECCCCcccC
Confidence 9998765443
No 6
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=2.1e-21 Score=149.77 Aligned_cols=84 Identities=17% Similarity=0.247 Sum_probs=78.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNI 90 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~ 90 (259)
+...++|||+||+++++|++|+++|++||.|++|+|++|+.|++++|||||+|++.++|++||+.||+ .|+|+.|+|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999996 59999999999
Q ss_pred cccCC
Q 039503 91 ASLGR 95 (259)
Q Consensus 91 a~~~~ 95 (259)
+..++
T Consensus 83 a~~~~ 87 (110)
T 3s8s_A 83 DIKGQ 87 (110)
T ss_dssp CSTTH
T ss_pred CCCCc
Confidence 97543
No 7
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.9e-21 Score=143.76 Aligned_cols=90 Identities=27% Similarity=0.351 Sum_probs=82.1
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceE
Q 039503 8 SQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRA 86 (259)
Q Consensus 8 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l 86 (259)
........++|||+||++++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.|++ .|+|++|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 8 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 345566789999999999999999999999999999999999998999999999999999999999999985 6999999
Q ss_pred EEEEcccCCCC
Q 039503 87 NCNIASLGRPR 97 (259)
Q Consensus 87 ~V~~a~~~~~~ 97 (259)
+|++++..+.+
T Consensus 88 ~v~~a~~~~~~ 98 (105)
T 1x5u_A 88 RVNKASAHNKN 98 (105)
T ss_dssp EEEETTTTSCC
T ss_pred EEEECCCCCcC
Confidence 99999876543
No 8
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=3.8e-21 Score=145.44 Aligned_cols=91 Identities=26% Similarity=0.445 Sum_probs=82.3
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceE
Q 039503 8 SQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRA 86 (259)
Q Consensus 8 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l 86 (259)
+.......++|||+||++++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.||+ .|+|++|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 334556689999999999999999999999999999999999999999999999999999999999999884 6999999
Q ss_pred EEEEcccCCCCC
Q 039503 87 NCNIASLGRPRP 98 (259)
Q Consensus 87 ~V~~a~~~~~~~ 98 (259)
+|++++..+.+.
T Consensus 86 ~V~~a~~~~~~~ 97 (103)
T 2dnm_A 86 RVQVARYGRRDL 97 (103)
T ss_dssp EEEECSSCCSCC
T ss_pred EEEECCcCCCCC
Confidence 999998765443
No 9
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=2.3e-20 Score=143.84 Aligned_cols=90 Identities=37% Similarity=0.560 Sum_probs=81.9
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEE
Q 039503 9 QFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRAN 87 (259)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~ 87 (259)
.......++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.|++ .|+|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556789999999999999999999999999999999999998999999999999999999999999985 59999999
Q ss_pred EEEcccCCCCC
Q 039503 88 CNIASLGRPRP 98 (259)
Q Consensus 88 V~~a~~~~~~~ 98 (259)
|++++.+..+.
T Consensus 89 V~~a~~~~~~~ 99 (115)
T 2dgo_A 89 TNWATRKPPAP 99 (115)
T ss_dssp EEESSCCCCCS
T ss_pred EEEccCCCCCC
Confidence 99998765443
No 10
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=8.6e-21 Score=141.16 Aligned_cols=84 Identities=36% Similarity=0.617 Sum_probs=78.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEc
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIA 91 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a 91 (259)
...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+|+ .|+|++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4578999999999999999999999999999999999999999999999999999999999999885 699999999999
Q ss_pred ccCCC
Q 039503 92 SLGRP 96 (259)
Q Consensus 92 ~~~~~ 96 (259)
+.+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 76543
No 11
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-20 Score=141.43 Aligned_cols=87 Identities=28% Similarity=0.466 Sum_probs=80.2
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
.....++|||+||++++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.+|+ .|+|++|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345688999999999999999999999999999999999998999999999999999999999999995 5999999999
Q ss_pred EcccCCCC
Q 039503 90 IASLGRPR 97 (259)
Q Consensus 90 ~a~~~~~~ 97 (259)
+++.++.+
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99876543
No 12
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7e-21 Score=141.92 Aligned_cols=85 Identities=27% Similarity=0.426 Sum_probs=79.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEE-EEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEE
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEA-VIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNI 90 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v-~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~ 90 (259)
...++|||+||++++++++|+++|++||.|++| +|++++.+++++|||||+|.+.++|++||+.+|+ .|+|++|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9999988999999999999999999999999995 59999999999
Q ss_pred cccCCCC
Q 039503 91 ASLGRPR 97 (259)
Q Consensus 91 a~~~~~~ 97 (259)
++.+..+
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9866543
No 13
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=143.01 Aligned_cols=88 Identities=26% Similarity=0.352 Sum_probs=81.1
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEE
Q 039503 9 QFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRAN 87 (259)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~ 87 (259)
.......++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.|++ .|+|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999995 59999999
Q ss_pred EEEcccCCC
Q 039503 88 CNIASLGRP 96 (259)
Q Consensus 88 V~~a~~~~~ 96 (259)
|++++.+..
T Consensus 89 v~~a~~~~~ 97 (103)
T 2cq0_A 89 VEWAKPSTN 97 (103)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999986644
No 14
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=1.7e-21 Score=145.00 Aligned_cols=82 Identities=20% Similarity=0.353 Sum_probs=75.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-C-CCCCceEEEEEc
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFG-DILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-P-VIDGRRANCNIA 91 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~-~i~G~~l~V~~a 91 (259)
+++|||+|||.++||++|+++|++|| .|++|+|++|+.|+++||||||+|.+.++|++||+.++ . .|+|++|+|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999999875 4 499999999999
Q ss_pred ccCCC
Q 039503 92 SLGRP 96 (259)
Q Consensus 92 ~~~~~ 96 (259)
+.+..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 76543
No 15
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=8.8e-22 Score=148.17 Aligned_cols=83 Identities=17% Similarity=0.312 Sum_probs=76.3
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCC--EEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-----CCCC
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGD--ILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-----VIDG 83 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~--I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-----~i~G 83 (259)
.+....+|||+||++++||++|+++|++||. |.+|+|++|+.|+++||||||+|.+.++|++||+.+|+ .|+|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3556889999999999999999999999995 67899999999999999999999999999999999874 3899
Q ss_pred ceEEEEEccc
Q 039503 84 RRANCNIASL 93 (259)
Q Consensus 84 ~~l~V~~a~~ 93 (259)
++|.|++|+.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999974
No 16
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.84 E-value=7.8e-21 Score=146.64 Aligned_cols=89 Identities=25% Similarity=0.365 Sum_probs=81.1
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V 88 (259)
..+...++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.||+ .|+|++|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4455678999999999999999999999999999999999998999999999999999999999999985 599999999
Q ss_pred EEcccCCCCC
Q 039503 89 NIASLGRPRP 98 (259)
Q Consensus 89 ~~a~~~~~~~ 98 (259)
++++.+..+.
T Consensus 100 ~~a~~~~~~~ 109 (115)
T 2cpz_A 100 QLKRSKNDSK 109 (115)
T ss_dssp ECCCCSCCCC
T ss_pred EEcCCCCcCC
Confidence 9998765433
No 17
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-20 Score=142.28 Aligned_cols=89 Identities=24% Similarity=0.416 Sum_probs=81.4
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeec-CCCCCcccEEEEEeCCHHHHHHHHhCC-C-CCCCCce
Q 039503 9 QFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISD-KNTGKSKGYGFVTFRDPESARRACDNP-N-PVIDGRR 85 (259)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d-~~tg~~kG~aFV~F~~~~~A~~Al~~~-~-~~i~G~~ 85 (259)
...+...++|||+||++++++++|+++|++||.|++|+|+++ +.+++++|||||+|.+.++|++||+.| | ..|+|++
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 455667899999999999999999999999999999999999 788999999999999999999999999 7 4699999
Q ss_pred EEEEEcccCCCC
Q 039503 86 ANCNIASLGRPR 97 (259)
Q Consensus 86 l~V~~a~~~~~~ 97 (259)
|+|++++.....
T Consensus 89 l~v~~a~~~~~~ 100 (107)
T 2cph_A 89 LVLEWADSEVTV 100 (107)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 999999876543
No 18
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=141.70 Aligned_cols=92 Identities=27% Similarity=0.464 Sum_probs=82.1
Q ss_pred CCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCc
Q 039503 6 YRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGR 84 (259)
Q Consensus 6 ~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~ 84 (259)
.+....+...++|||+||++++++++|+++|++||.|++|+|+.+ +++++|||||+|.+.++|++||+.||+ .|+|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2d9p_A 6 SGDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 83 (103)
T ss_dssp CCCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 334456678899999999999999999999999999999999998 789999999999999999999999985 59999
Q ss_pred eEEEEEcccCCCCCC
Q 039503 85 RANCNIASLGRPRPS 99 (259)
Q Consensus 85 ~l~V~~a~~~~~~~~ 99 (259)
+|.|++++.+..+..
T Consensus 84 ~l~V~~a~~~~~~~~ 98 (103)
T 2d9p_A 84 PLYVALAQRKEERQS 98 (103)
T ss_dssp BCEEEECSSCCCCCC
T ss_pred EEEEEEecccccCCC
Confidence 999999987655443
No 19
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=142.30 Aligned_cols=87 Identities=32% Similarity=0.605 Sum_probs=80.1
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
.....++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.||+ .|+|++|+|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 445688999999999999999999999999999999999999999999999999999999999999985 6999999999
Q ss_pred EcccCCCC
Q 039503 90 IASLGRPR 97 (259)
Q Consensus 90 ~a~~~~~~ 97 (259)
+++.....
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 20
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=141.92 Aligned_cols=87 Identities=25% Similarity=0.390 Sum_probs=79.2
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhh-CCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CC-CCCceE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQ-FGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PV-IDGRRA 86 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~-i~G~~l 86 (259)
......++|||+||++++++++|+++|++ ||.|++|+|+.++ +++++|||||+|.+.++|++||+.++ .. |+|++|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 34456789999999999999999999999 9999999999998 89999999999999999999999998 47 999999
Q ss_pred EEEEcccCCCC
Q 039503 87 NCNIASLGRPR 97 (259)
Q Consensus 87 ~V~~a~~~~~~ 97 (259)
+|++++.+..+
T Consensus 83 ~v~~a~~~~~~ 93 (104)
T 2dhg_A 83 RLSVAIPKASR 93 (104)
T ss_dssp CCCBCCCCCSC
T ss_pred EEEEccCCCcC
Confidence 99999765543
No 21
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=3.5e-20 Score=140.24 Aligned_cols=87 Identities=22% Similarity=0.399 Sum_probs=79.1
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceE
Q 039503 8 SQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRA 86 (259)
Q Consensus 8 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l 86 (259)
....+...++|||+||++++++++|+++|++|| |++|+|++++.+++++|||||+|.+.++|++|| .+|+ .|+|++|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 85 (103)
T 2dng_A 8 KELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSL 85 (103)
T ss_dssp CCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEE
Confidence 345566789999999999999999999999997 999999999999999999999999999999999 7885 5999999
Q ss_pred EEEEcccCCC
Q 039503 87 NCNIASLGRP 96 (259)
Q Consensus 87 ~V~~a~~~~~ 96 (259)
+|++++....
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2dng_A 86 RVDIAEGRKQ 95 (103)
T ss_dssp EEEECCCCCC
T ss_pred EEEEecCCCC
Confidence 9999986544
No 22
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.84 E-value=1.6e-20 Score=137.67 Aligned_cols=82 Identities=35% Similarity=0.769 Sum_probs=76.3
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCN 89 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~ 89 (259)
..+...++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++..|+|++|+|+
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 85 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999886677999999998
Q ss_pred Ec
Q 039503 90 IA 91 (259)
Q Consensus 90 ~a 91 (259)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 76
No 23
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.4e-20 Score=142.62 Aligned_cols=88 Identities=24% Similarity=0.425 Sum_probs=80.3
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC------CC-CCC
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN------PV-IDG 83 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~------~~-i~G 83 (259)
.....++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++ +. |+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 44567899999999999999999999999999999999999999999999999999999999999987 64 999
Q ss_pred ceEEEEEcccCCCCC
Q 039503 84 RRANCNIASLGRPRP 98 (259)
Q Consensus 84 ~~l~V~~a~~~~~~~ 98 (259)
++|+|++++.+..+.
T Consensus 91 ~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 91 RQLKVDLAVTRDEAA 105 (111)
T ss_dssp CEEEEECCCCCCCCC
T ss_pred EEEEEEECCCCccCC
Confidence 999999998765433
No 24
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.5e-21 Score=143.44 Aligned_cols=89 Identities=36% Similarity=0.419 Sum_probs=81.2
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V 88 (259)
......++|||+||++++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.||+ .|+|++|+|
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3455789999999999999999999999999999999999999999999999999999999999999985 599999999
Q ss_pred EEcccCCCCC
Q 039503 89 NIASLGRPRP 98 (259)
Q Consensus 89 ~~a~~~~~~~ 98 (259)
++++..+.+.
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 2cqb_A 87 NLAKPMRIKE 96 (102)
T ss_dssp EECCCCCCCC
T ss_pred EeCCCCCCCC
Confidence 9998765443
No 25
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=1.6e-20 Score=142.64 Aligned_cols=88 Identities=26% Similarity=0.418 Sum_probs=80.6
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CC---CCc
Q 039503 9 QFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VI---DGR 84 (259)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i---~G~ 84 (259)
...+...++|||+||+.++++++|+++|++||.|++|+|+.|+.+++++|||||+|.+.++|++||+.||+ .+ .|+
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 34566789999999999999999999999999999999999999999999999999999999999999985 46 889
Q ss_pred eEEEEEcccCCC
Q 039503 85 RANCNIASLGRP 96 (259)
Q Consensus 85 ~l~V~~a~~~~~ 96 (259)
+|+|++++..+.
T Consensus 87 ~l~v~~a~~~~~ 98 (106)
T 2dgp_A 87 PIQVKPADSESR 98 (106)
T ss_dssp CCEEEECCCCSC
T ss_pred eEEEEECCcccc
Confidence 999999987554
No 26
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.7e-20 Score=141.08 Aligned_cols=89 Identities=19% Similarity=0.426 Sum_probs=80.1
Q ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCC-CCcccEEEEEeCCHHHHHHHHhCCCC-CCCCc
Q 039503 7 RSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNT-GKSKGYGFVTFRDPESARRACDNPNP-VIDGR 84 (259)
Q Consensus 7 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t-g~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~ 84 (259)
+....+...++|||+||++++++++|+++|++|| |++|+|++++.+ ++++|||||+|.+.++|++|| .+++ .|+|+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 84 (104)
T 1wi8_A 7 GSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNK 84 (104)
T ss_dssp CCCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTE
T ss_pred CCCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCc
Confidence 3445666789999999999999999999999999 999999999888 999999999999999999999 8885 59999
Q ss_pred eEEEEEcccCCCC
Q 039503 85 RANCNIASLGRPR 97 (259)
Q Consensus 85 ~l~V~~a~~~~~~ 97 (259)
+|+|++++.+..+
T Consensus 85 ~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 85 RIRVDVADQAQDK 97 (104)
T ss_dssp ECEEEECCCCCCC
T ss_pred EEEEEEccCCCCC
Confidence 9999999876543
No 27
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.83 E-value=3.1e-20 Score=144.20 Aligned_cols=84 Identities=31% Similarity=0.545 Sum_probs=77.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNI 90 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~ 90 (259)
+...++|||+||++++++++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+.+|+ .|+|++|+|++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4557899999999999999999999999999999999998 899999999999999999999999995 59999999999
Q ss_pred cccCCC
Q 039503 91 ASLGRP 96 (259)
Q Consensus 91 a~~~~~ 96 (259)
++....
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 986543
No 28
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.83 E-value=1.8e-20 Score=143.88 Aligned_cols=87 Identities=32% Similarity=0.643 Sum_probs=77.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCNI 90 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~~ 90 (259)
.+...++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++..|+|++|+|++
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999988679999999999
Q ss_pred cccCCCC
Q 039503 91 ASLGRPR 97 (259)
Q Consensus 91 a~~~~~~ 97 (259)
+..+..+
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9866543
No 29
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.83 E-value=1.1e-20 Score=163.51 Aligned_cols=80 Identities=23% Similarity=0.441 Sum_probs=75.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCC--CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEE
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFG--DILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNI 90 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~ 90 (259)
..++|||+||+++++|++|+++|++|| +|++|+|++|+.++++||||||+|.+.++|++||+.||+ .|+|++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999994 69999999999
Q ss_pred ccc
Q 039503 91 ASL 93 (259)
Q Consensus 91 a~~ 93 (259)
++.
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 30
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2e-20 Score=140.05 Aligned_cols=85 Identities=26% Similarity=0.477 Sum_probs=77.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCC---CCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEE
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKN---TGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~---tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V 88 (259)
...++|||+||++++++++|+++|++||.|++|+|+.++. |++++|||||+|.+.++|++||+.|++ .|+|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4578999999999999999999999999999999998876 668999999999999999999999985 599999999
Q ss_pred EEcccCCCC
Q 039503 89 NIASLGRPR 97 (259)
Q Consensus 89 ~~a~~~~~~ 97 (259)
++++.....
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999865443
No 31
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.83 E-value=1.7e-20 Score=146.82 Aligned_cols=88 Identities=23% Similarity=0.340 Sum_probs=80.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
.....++|||+||++++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.||+ .|+|+.|.|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 445678999999999999999999999999999999999999999999999999999999999999885 6999999999
Q ss_pred EcccCCCCC
Q 039503 90 IASLGRPRP 98 (259)
Q Consensus 90 ~a~~~~~~~ 98 (259)
+++......
T Consensus 98 ~a~~~~~~~ 106 (126)
T 3ex7_B 98 WCFVRGPPK 106 (126)
T ss_dssp ESEESSSCC
T ss_pred EecCCCCCC
Confidence 998765443
No 32
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.83 E-value=5.2e-20 Score=139.52 Aligned_cols=89 Identities=25% Similarity=0.311 Sum_probs=79.7
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCC---c
Q 039503 9 QFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDG---R 84 (259)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G---~ 84 (259)
...+...++|||+||++++++++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+.||+ .|.| +
T Consensus 9 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 9 ESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CCSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 3445568999999999999999999999999999999999998 799999999999999999999999985 5777 9
Q ss_pred eEEEEEcccCCCCC
Q 039503 85 RANCNIASLGRPRP 98 (259)
Q Consensus 85 ~l~V~~a~~~~~~~ 98 (259)
.|+|++++..+.+.
T Consensus 88 ~l~V~~a~~~~~~~ 101 (105)
T 2dnh_A 88 SLVVKFADTDKESG 101 (105)
T ss_dssp CCEEEESCSSCCCS
T ss_pred cEEEEECccCcccC
Confidence 99999998765543
No 33
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.7e-20 Score=138.84 Aligned_cols=86 Identities=23% Similarity=0.331 Sum_probs=79.1
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEE-EEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCce--
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDIL-EAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRR-- 85 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~-- 85 (259)
......++|||+||+++++|++|+++|++||.|+ +|+|++|+.+++++|||||+|.+.++|++||+.||+ .|+|+.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 3455689999999999999999999999999999 999999999999999999999999999999999995 599999
Q ss_pred --EEEEEcccCC
Q 039503 86 --ANCNIASLGR 95 (259)
Q Consensus 86 --l~V~~a~~~~ 95 (259)
|+|++++...
T Consensus 84 ~~l~v~~a~~~~ 95 (99)
T 2div_A 84 KRFKLNYATYSG 95 (99)
T ss_dssp EECCEEETTCCS
T ss_pred eeEEEeecCCCC
Confidence 9999987653
No 34
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.2e-20 Score=140.90 Aligned_cols=84 Identities=23% Similarity=0.336 Sum_probs=78.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNI 90 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~ 90 (259)
....++|||+||++++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.+++ .|+|++|.|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 44578999999999999999999999999999999999999999999999999999999999999885 59999999999
Q ss_pred cccCC
Q 039503 91 ASLGR 95 (259)
Q Consensus 91 a~~~~ 95 (259)
++.+.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98654
No 35
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.1e-20 Score=137.98 Aligned_cols=86 Identities=27% Similarity=0.442 Sum_probs=79.4
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceE
Q 039503 8 SQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRA 86 (259)
Q Consensus 8 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l 86 (259)
........++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.||+ .|+|++|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 344556789999999999999999999999999999999999999999999999999999999999999995 5999999
Q ss_pred EEEEccc
Q 039503 87 NCNIASL 93 (259)
Q Consensus 87 ~V~~a~~ 93 (259)
+|++++.
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999864
No 36
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.9e-20 Score=144.66 Aligned_cols=84 Identities=35% Similarity=0.655 Sum_probs=77.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCceEEEEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVIDGRRANCNI 90 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~~l~V~~ 90 (259)
+...++|||+||++++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+. + ..|+|++|+|++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999 6 469999999999
Q ss_pred cccCCC
Q 039503 91 ASLGRP 96 (259)
Q Consensus 91 a~~~~~ 96 (259)
++.+..
T Consensus 103 a~~~~~ 108 (116)
T 1x4b_A 103 AVAREE 108 (116)
T ss_dssp CSSCCC
T ss_pred CCCCcc
Confidence 987644
No 37
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=2.4e-20 Score=136.44 Aligned_cols=82 Identities=37% Similarity=0.520 Sum_probs=75.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEc
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIA 91 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a 91 (259)
...++|||+||+.++++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++||+.+++ .|+|++|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 3568999999999999999999999999999999999998999999999999999999999999885 599999999998
Q ss_pred ccC
Q 039503 92 SLG 94 (259)
Q Consensus 92 ~~~ 94 (259)
+.+
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 753
No 38
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=5.2e-20 Score=138.45 Aligned_cols=84 Identities=20% Similarity=0.414 Sum_probs=78.0
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
.+...++|||+||+.++++++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+.|++ .|+|++|+|+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998 899999999999999999999999985 5999999999
Q ss_pred EcccCC
Q 039503 90 IASLGR 95 (259)
Q Consensus 90 ~a~~~~ 95 (259)
+++.+.
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 997654
No 39
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=2.8e-20 Score=141.13 Aligned_cols=88 Identities=36% Similarity=0.766 Sum_probs=80.3
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEE
Q 039503 9 QFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRAN 87 (259)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~ 87 (259)
...+...++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+. ++ .|+|++|+
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999999 74 59999999
Q ss_pred EEEcccCCCC
Q 039503 88 CNIASLGRPR 97 (259)
Q Consensus 88 V~~a~~~~~~ 97 (259)
|++++.+...
T Consensus 89 V~~a~~~~~~ 98 (105)
T 2dh8_A 89 PKPCTPRGMQ 98 (105)
T ss_dssp CCCSCCSSCC
T ss_pred EEEccCCCCC
Confidence 9999865543
No 40
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=2.3e-20 Score=135.95 Aligned_cols=81 Identities=38% Similarity=0.503 Sum_probs=76.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNI 90 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~ 90 (259)
+...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+|+ .|+|++|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45689999999999999999999999999999999999988999999999999999999999999885 59999999999
Q ss_pred cc
Q 039503 91 AS 92 (259)
Q Consensus 91 a~ 92 (259)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 41
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1e-19 Score=137.53 Aligned_cols=86 Identities=30% Similarity=0.650 Sum_probs=78.6
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCN 89 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~ 89 (259)
..+...++|||+||++++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+. ...|+|++|.|+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~ 88 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEE
Confidence 4556688999999999999999999999999999999999999999999999999999999999995 346999999999
Q ss_pred EcccCCC
Q 039503 90 IASLGRP 96 (259)
Q Consensus 90 ~a~~~~~ 96 (259)
++..+..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqg_A 89 LPNSKQS 95 (103)
T ss_dssp CCCTTCC
T ss_pred ecCCCCc
Confidence 9987544
No 42
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=3.9e-20 Score=134.09 Aligned_cols=79 Identities=33% Similarity=0.532 Sum_probs=75.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEcccC
Q 039503 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIASLG 94 (259)
Q Consensus 16 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~~~ 94 (259)
++|||+||+.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.+++ .|+|++|+|++++.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 6899999999999999999999999999999999999999999999999999999999999885 599999999999754
No 43
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=2.4e-20 Score=144.39 Aligned_cols=83 Identities=27% Similarity=0.436 Sum_probs=77.1
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V 88 (259)
..+...++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+|+ .|+|++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4456679999999999999999999999999999999999999999999999999999999999999985 599999999
Q ss_pred EEcc
Q 039503 89 NIAS 92 (259)
Q Consensus 89 ~~a~ 92 (259)
++++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9874
No 44
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=2.2e-20 Score=144.59 Aligned_cols=83 Identities=28% Similarity=0.483 Sum_probs=73.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEcc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIAS 92 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~ 92 (259)
..++|||+||+++++|++|+++|++||.|++|+|++|+ +++||||||+|.+.++|++||+.|++ .|+|++|+|++++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35789999999999999999999999999999999985 45899999999999999999999985 5999999999998
Q ss_pred cCCCCC
Q 039503 93 LGRPRP 98 (259)
Q Consensus 93 ~~~~~~ 98 (259)
.++.+.
T Consensus 82 ~~~~~~ 87 (115)
T 4f25_A 82 SRKERE 87 (115)
T ss_dssp CCCC--
T ss_pred Cccccc
Confidence 655443
No 45
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.82 E-value=6.4e-21 Score=141.12 Aligned_cols=80 Identities=23% Similarity=0.442 Sum_probs=71.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCC--CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEcc
Q 039503 16 TKVFVGGLAWETPTEEMRRYFEQFG--DILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIAS 92 (259)
Q Consensus 16 ~~lfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~ 92 (259)
.+|||+||+++++|++|+++|++|| .|++|+|+.|+.+|+++|||||+|.+.++|++||+.+|+ .|+|++|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 999999999999999999999999999999999999995 6999999999997
Q ss_pred cCC
Q 039503 93 LGR 95 (259)
Q Consensus 93 ~~~ 95 (259)
...
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 46
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=3.5e-20 Score=141.75 Aligned_cols=86 Identities=24% Similarity=0.336 Sum_probs=79.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
.....++|||+||++++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.|++ .|+|++|.|+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 445678999999999999999999999999999999999999999999999999999999999999985 5999999999
Q ss_pred EcccCCC
Q 039503 90 IASLGRP 96 (259)
Q Consensus 90 ~a~~~~~ 96 (259)
+++.+..
T Consensus 102 ~a~~~~~ 108 (110)
T 1oo0_B 102 WCFVKGP 108 (110)
T ss_dssp ESEESSC
T ss_pred EcccCCC
Confidence 9987654
No 47
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.9e-20 Score=142.17 Aligned_cols=87 Identities=26% Similarity=0.413 Sum_probs=80.2
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEE--------EEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-C
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDIL--------EAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-V 80 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~--------~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~ 80 (259)
..+...++|||+||++++++++|+++|++||.|+ +|+|+.++.+++++|||||+|.+.++|++||+.||+ .
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 4566789999999999999999999999999999 699999999999999999999999999999999885 5
Q ss_pred CCCceEEEEEcccCCC
Q 039503 81 IDGRRANCNIASLGRP 96 (259)
Q Consensus 81 i~G~~l~V~~a~~~~~ 96 (259)
|+|++|+|++++.+..
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999986544
No 48
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=3.5e-20 Score=137.56 Aligned_cols=83 Identities=29% Similarity=0.472 Sum_probs=77.4
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V 88 (259)
......++|||+||+.++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.+|+ .|+|++|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 3455678999999999999999999999999999999999999999999999999999999999999995 599999999
Q ss_pred EEcc
Q 039503 89 NIAS 92 (259)
Q Consensus 89 ~~a~ 92 (259)
++|+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 49
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-19 Score=138.79 Aligned_cols=87 Identities=26% Similarity=0.373 Sum_probs=78.4
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V 88 (259)
......++|||+||++++++++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+.||+ .|+|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 344567899999999999999999999999999999999997 599999999999999999999999985 599999999
Q ss_pred EEcccCCCC
Q 039503 89 NIASLGRPR 97 (259)
Q Consensus 89 ~~a~~~~~~ 97 (259)
++++....+
T Consensus 89 ~~a~~~~~~ 97 (114)
T 2do0_A 89 KMDERALPK 97 (114)
T ss_dssp EECSCCCCC
T ss_pred EEcccCCCC
Confidence 999765443
No 50
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.82 E-value=2.9e-20 Score=147.16 Aligned_cols=87 Identities=28% Similarity=0.487 Sum_probs=80.4
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V 88 (259)
......++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.|++ .|+|++|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4455678999999999999999999999999999999999999999999999999999999999999985 599999999
Q ss_pred EEcccCCC
Q 039503 89 NIASLGRP 96 (259)
Q Consensus 89 ~~a~~~~~ 96 (259)
++++.++.
T Consensus 121 ~~a~~~~p 128 (129)
T 2kxn_B 121 DFSITKRP 128 (129)
T ss_dssp SCCSSSSC
T ss_pred EEecCCCC
Confidence 99987653
No 51
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1e-19 Score=139.00 Aligned_cols=84 Identities=23% Similarity=0.382 Sum_probs=75.1
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V 88 (259)
..+...++|||+||++++++++|+++|++||.|++|+|+.+ +++++||||+|.+.++|++||+.||+ .|+|++|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 45567899999999999999999999999999999999654 55799999999999999999999985 599999999
Q ss_pred EEcccCCC
Q 039503 89 NIASLGRP 96 (259)
Q Consensus 89 ~~a~~~~~ 96 (259)
++++..+.
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4a_A 94 EFPRSGRG 101 (109)
T ss_dssp ECCCCCCC
T ss_pred EEcccCCC
Confidence 99976543
No 52
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=6.8e-20 Score=137.65 Aligned_cols=83 Identities=31% Similarity=0.456 Sum_probs=77.5
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEE--------EEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-C
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILE--------AVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-V 80 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~ 80 (259)
......++|||+||++++++++|+++|++||.|++ |+|++++.+++++|||||+|.+.++|++||+.||+ .
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 44556899999999999999999999999999999 99999999999999999999999999999999885 5
Q ss_pred CCCceEEEEEcc
Q 039503 81 IDGRRANCNIAS 92 (259)
Q Consensus 81 i~G~~l~V~~a~ 92 (259)
|+|++|+|++|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999974
No 53
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.82 E-value=4.8e-20 Score=137.76 Aligned_cols=81 Identities=28% Similarity=0.525 Sum_probs=76.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEccc
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIASL 93 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~~ 93 (259)
.++|||+||+.++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.+++ .|+|+.|+|++++.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57999999999999999999999999999999999999999999999999999999999999985 59999999999976
Q ss_pred CC
Q 039503 94 GR 95 (259)
Q Consensus 94 ~~ 95 (259)
++
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 54
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.82 E-value=4.1e-20 Score=135.73 Aligned_cols=81 Identities=23% Similarity=0.480 Sum_probs=75.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEc
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIA 91 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a 91 (259)
...++|||+||+.++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++|| .+++ .|+|++|+|+++
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 35689999999999999999999999999999999999989999999999999999999999 7885 599999999998
Q ss_pred ccC
Q 039503 92 SLG 94 (259)
Q Consensus 92 ~~~ 94 (259)
+..
T Consensus 83 ~~~ 85 (89)
T 3ucg_A 83 RTN 85 (89)
T ss_dssp TTT
T ss_pred cCC
Confidence 764
No 55
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-19 Score=137.38 Aligned_cols=86 Identities=17% Similarity=0.299 Sum_probs=78.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCC-EEEEEEe-ecCCCCCcccEEEEEeCCHHHHHHHHhCCC--C-CCCCceE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGD-ILEAVII-SDKNTGKSKGYGFVTFRDPESARRACDNPN--P-VIDGRRA 86 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~-I~~v~i~-~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~--~-~i~G~~l 86 (259)
....++|||+||++++++++|+++|++||. |++|+|+ .++.+++++|||||+|.+.++|++||+.|+ . .|+|++|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345789999999999999999999999998 9999998 888889999999999999999999999995 3 5999999
Q ss_pred EEEEcccCCCC
Q 039503 87 NCNIASLGRPR 97 (259)
Q Consensus 87 ~V~~a~~~~~~ 97 (259)
+|++++.....
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999876543
No 56
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.82 E-value=1.7e-20 Score=148.49 Aligned_cols=87 Identities=15% Similarity=0.252 Sum_probs=79.3
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEE--EEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-C----CCC
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILE--AVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-P----VID 82 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~--v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~----~i~ 82 (259)
..+...++|||+||+++++|++|+++|++||.|+. |+|++|+.++++||||||+|.+. +|++||+.|| . .|+
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34567889999999999999999999999999976 99999999999999999999999 9999999998 5 799
Q ss_pred CceEEEEEcccCCCC
Q 039503 83 GRRANCNIASLGRPR 97 (259)
Q Consensus 83 G~~l~V~~a~~~~~~ 97 (259)
|++|+|++++..+.+
T Consensus 97 gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 97 GKTINVEFAKGSKRD 111 (131)
T ss_dssp GCCCCCEECCCSCCC
T ss_pred CEEEEEEECCCCCCC
Confidence 999999999875443
No 57
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=136.29 Aligned_cols=87 Identities=22% Similarity=0.304 Sum_probs=77.5
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V 88 (259)
..+...++|||+||++++++++|+++|++||.|++|+|++++. .++|||||+|.+.++|++||+.|++ .|+|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 4556789999999999999999999999999999999999854 3689999999999999999999985 599999999
Q ss_pred EEcccCCCCC
Q 039503 89 NIASLGRPRP 98 (259)
Q Consensus 89 ~~a~~~~~~~ 98 (259)
++++....++
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cqi_A 88 NWATTPSSQK 97 (103)
T ss_dssp EECCCTTCCC
T ss_pred EECCCCcccc
Confidence 9998755433
No 58
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.2e-19 Score=135.66 Aligned_cols=88 Identities=31% Similarity=0.517 Sum_probs=78.3
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEE
Q 039503 9 QFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRAN 87 (259)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~ 87 (259)
...+...++|||+||++++++++|+++|++||.|++|+|+.++. .++|||||+|.+.++|++||+.|++ .|+|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34566789999999999999999999999999999999998864 3899999999999999999999885 59999999
Q ss_pred EEEcccCCCCC
Q 039503 88 CNIASLGRPRP 98 (259)
Q Consensus 88 V~~a~~~~~~~ 98 (259)
|++++.+....
T Consensus 87 v~~a~~~~~~~ 97 (103)
T 2cq3_A 87 VNNATARVMTN 97 (103)
T ss_dssp EEECCSSCCCC
T ss_pred EEEcccCCCCC
Confidence 99998765443
No 59
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.81 E-value=1.9e-20 Score=141.49 Aligned_cols=83 Identities=18% Similarity=0.186 Sum_probs=77.3
Q ss_pred CCCccEEEEcCCCC------CCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCC-
Q 039503 12 DTTFTKVFVGGLAW------ETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDG- 83 (259)
Q Consensus 12 ~~~~~~lfVgnLp~------~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G- 83 (259)
+...++|||+|||. ++++++|+++|++||.|++|+|++|+.|++++|||||+|.+.++|++||+.||+ .|+|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34578999999999 999999999999999999999999999999999999999999999999999995 5999
Q ss_pred ceEEEEEcccC
Q 039503 84 RRANCNIASLG 94 (259)
Q Consensus 84 ~~l~V~~a~~~ 94 (259)
+.|+|+++...
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999999753
No 60
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.81 E-value=5.3e-20 Score=134.67 Aligned_cols=83 Identities=25% Similarity=0.443 Sum_probs=76.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCC-cccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGK-SKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIA 91 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~-~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a 91 (259)
..++|||+||+.++++++|+++|++||.|.+|+|+.++.++. ++|||||+|.+.++|++||+.+|+ .|+|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999987766 899999999999999999999885 599999999999
Q ss_pred ccCCC
Q 039503 92 SLGRP 96 (259)
Q Consensus 92 ~~~~~ 96 (259)
...+.
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 61
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=4.4e-20 Score=138.18 Aligned_cols=85 Identities=20% Similarity=0.270 Sum_probs=78.6
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEE
Q 039503 9 QFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRAN 87 (259)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~ 87 (259)
...+...++|||+||++++++++|+++|++||.|++++++.++.+++++|||||+|.+.++|++||+.+|+ .|+|++|+
T Consensus 9 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 88 (98)
T 2cqp_A 9 SSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (98)
T ss_dssp CCCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 34566789999999999999999999999999999999999989999999999999999999999999995 59999999
Q ss_pred EEEccc
Q 039503 88 CNIASL 93 (259)
Q Consensus 88 V~~a~~ 93 (259)
|++++.
T Consensus 89 V~~a~~ 94 (98)
T 2cqp_A 89 LVLGSG 94 (98)
T ss_dssp EEESSC
T ss_pred EEEcCC
Confidence 999864
No 62
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.81 E-value=2.2e-19 Score=169.15 Aligned_cols=86 Identities=26% Similarity=0.525 Sum_probs=79.4
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
.....++|||+||+++||+++|+++|++||.|+.|.|+.++.+++++|||||+|.+.++|++||+.||+ .|+|+.|.|+
T Consensus 98 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 98 QGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 344568999999999999999999999999999999999999999999999999999999999999995 5999999999
Q ss_pred EcccCCC
Q 039503 90 IASLGRP 96 (259)
Q Consensus 90 ~a~~~~~ 96 (259)
++.....
T Consensus 178 ~a~~~~~ 184 (437)
T 3pgw_S 178 VERGRTV 184 (437)
T ss_pred EeCCCCC
Confidence 9986544
No 63
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.2e-20 Score=132.65 Aligned_cols=76 Identities=36% Similarity=0.758 Sum_probs=73.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEEEc
Q 039503 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCNIA 91 (259)
Q Consensus 16 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~~a 91 (259)
++|||+||+.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.++..|+|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 5799999999999999999999999999999999999999999999999999999999999996699999999987
No 64
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.81 E-value=9.8e-20 Score=139.61 Aligned_cols=85 Identities=33% Similarity=0.590 Sum_probs=79.2
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V 88 (259)
..+...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+++ .|+|++|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4556789999999999999999999999999999999999999999999999999999999999999885 599999999
Q ss_pred EEcccC
Q 039503 89 NIASLG 94 (259)
Q Consensus 89 ~~a~~~ 94 (259)
++++.+
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 999764
No 65
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.81 E-value=1.1e-19 Score=138.20 Aligned_cols=81 Identities=27% Similarity=0.444 Sum_probs=75.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
.....++|||+||++++++++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+.|++ .|+|++|+|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999999998 899999999999999999999999885 5999999999
Q ss_pred Ecc
Q 039503 90 IAS 92 (259)
Q Consensus 90 ~a~ 92 (259)
+++
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 66
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.81 E-value=9.6e-20 Score=148.87 Aligned_cols=80 Identities=23% Similarity=0.444 Sum_probs=75.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCC--CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEE
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFG--DILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNI 90 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~ 90 (259)
..++|||+||+++++|++|+++|++|| .|++|+|+.|+.+|+++|||||+|.+.++|++||+.||+ .|+|++|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999999995 59999999999
Q ss_pred ccc
Q 039503 91 ASL 93 (259)
Q Consensus 91 a~~ 93 (259)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 864
No 67
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=135.21 Aligned_cols=83 Identities=33% Similarity=0.426 Sum_probs=76.3
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V 88 (259)
..+...++|||+||++++++++|+++|++||.|++|+|++++. ++++|||||+|.+.++|++||+.+|+ .|+|++|+|
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 4556789999999999999999999999999999999999985 89999999999999999999999885 599999999
Q ss_pred EEccc
Q 039503 89 NIASL 93 (259)
Q Consensus 89 ~~a~~ 93 (259)
++++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99864
No 68
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.80 E-value=1.9e-19 Score=140.46 Aligned_cols=82 Identities=24% Similarity=0.466 Sum_probs=76.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEcc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIAS 92 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~ 92 (259)
..++|||+||++++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++|| .+++ .|+|++|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999999999999999999999999999 7885 5999999999997
Q ss_pred cCCC
Q 039503 93 LGRP 96 (259)
Q Consensus 93 ~~~~ 96 (259)
....
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 5443
No 69
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.9e-19 Score=136.78 Aligned_cols=83 Identities=20% Similarity=0.278 Sum_probs=74.3
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCceEE
Q 039503 9 QFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVIDGRRAN 87 (259)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~~l~ 87 (259)
.......++|||+||+++++|++|+++|++||. ++|+|++|+ +++++|||||+|.+.++|++||+ +| ..|+|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVE 85 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEE
Confidence 345567889999999999999999999999994 599999998 89999999999999999999996 46 569999999
Q ss_pred EEEcccC
Q 039503 88 CNIASLG 94 (259)
Q Consensus 88 V~~a~~~ 94 (259)
|.++...
T Consensus 86 V~~~~~~ 92 (102)
T 1wez_A 86 LFLNSTA 92 (102)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 9988754
No 70
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-19 Score=137.54 Aligned_cols=81 Identities=17% Similarity=0.262 Sum_probs=75.1
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~~l~V~ 89 (259)
.+...++|||+||++++|+++|+++|++||.|.+|+|++|+. ++++|||||+|.+.++|++||+ ++ ..|+|+.|.|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 456689999999999999999999999999999999999987 9999999999999999999999 66 57999999999
Q ss_pred Eccc
Q 039503 90 IASL 93 (259)
Q Consensus 90 ~a~~ 93 (259)
++..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 8764
No 71
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.7e-20 Score=144.47 Aligned_cols=83 Identities=23% Similarity=0.333 Sum_probs=76.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNI 90 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~ 90 (259)
+...++|||+||++++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++|| .+|+ .|+|+.|+|++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 345689999999999999999999999999999999999999999999999999999999999 8885 59999999999
Q ss_pred cccCC
Q 039503 91 ASLGR 95 (259)
Q Consensus 91 a~~~~ 95 (259)
++..+
T Consensus 101 a~~~~ 105 (114)
T 2cq4_A 101 SQAEK 105 (114)
T ss_dssp HHHHH
T ss_pred cCCCc
Confidence 97654
No 72
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=7e-20 Score=146.02 Aligned_cols=89 Identities=33% Similarity=0.559 Sum_probs=81.2
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V 88 (259)
..+...++|||+||++++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.|++ .|+|++|+|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3445678999999999999999999999999999999999998999999999999999999999999995 699999999
Q ss_pred EEcccCCCCC
Q 039503 89 NIASLGRPRP 98 (259)
Q Consensus 89 ~~a~~~~~~~ 98 (259)
++++..+.+.
T Consensus 122 ~~a~~~~~~~ 131 (135)
T 2lea_A 122 QMARYGRPPD 131 (135)
T ss_dssp EECCCCCCCT
T ss_pred EECCCCCCCc
Confidence 9998765544
No 73
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=2.7e-19 Score=145.19 Aligned_cols=88 Identities=33% Similarity=0.580 Sum_probs=80.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
.....++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.||+ .|+|+.|+|+
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345578999999999999999999999999999999999999999999999999999999999999996 5999999999
Q ss_pred EcccCCCCC
Q 039503 90 IASLGRPRP 98 (259)
Q Consensus 90 ~a~~~~~~~ 98 (259)
+++..+.+.
T Consensus 146 ~a~~~~~~~ 154 (158)
T 2kn4_A 146 MARYGRPPD 154 (158)
T ss_dssp EECCSSCCC
T ss_pred ECCCCCCCC
Confidence 998765443
No 74
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.80 E-value=2.1e-19 Score=132.85 Aligned_cols=84 Identities=32% Similarity=0.526 Sum_probs=76.4
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
.+...++|||+||++++++++|+++|++||.|++|+|+++ +++++|||||+|.+.++|++||+.|++ .|+|++|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999984 788999999999999999999999885 6999999999
Q ss_pred EcccCCC
Q 039503 90 IASLGRP 96 (259)
Q Consensus 90 ~a~~~~~ 96 (259)
+++....
T Consensus 82 ~a~~~~~ 88 (92)
T 2dgv_A 82 IDRNASG 88 (92)
T ss_dssp ECSCCSS
T ss_pred EcCCCCC
Confidence 9986543
No 75
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.7e-19 Score=136.03 Aligned_cols=80 Identities=19% Similarity=0.245 Sum_probs=72.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCC-----ce
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDG-----RR 85 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G-----~~ 85 (259)
....++|||+||++++++++|+++|++||+|++|+|+.+ |||||+|.+.++|++||+.||+ .|+| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 456789999999999999999999999999999999875 8999999999999999999995 5888 99
Q ss_pred EEEEEcccCCCCC
Q 039503 86 ANCNIASLGRPRP 98 (259)
Q Consensus 86 l~V~~a~~~~~~~ 98 (259)
|+|++++.+....
T Consensus 85 i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 85 IRVKVDGPRSPSY 97 (108)
T ss_dssp EEEEESSCCSCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999998765443
No 76
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.2e-20 Score=138.35 Aligned_cols=85 Identities=32% Similarity=0.604 Sum_probs=78.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNI 90 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~ 90 (259)
+...++|||+||++++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.+++ .|+|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 34578999999999999999999999999999999999998999999999999999999999999985 59999999999
Q ss_pred cccCCC
Q 039503 91 ASLGRP 96 (259)
Q Consensus 91 a~~~~~ 96 (259)
++..+.
T Consensus 85 a~~~~~ 90 (104)
T 1p1t_A 85 AASEKN 90 (104)
T ss_dssp TTCTTH
T ss_pred CCCccc
Confidence 986543
No 77
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.79 E-value=5.2e-19 Score=133.84 Aligned_cols=82 Identities=23% Similarity=0.381 Sum_probs=72.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
.....++|||+||++++++++|+++|++||.|++|+|+ ++||||+|.+.++|++||+.|++ .|+|+.|+|+
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 34567899999999999999999999999999999986 45999999999999999999885 5999999999
Q ss_pred EcccCCCCCCC
Q 039503 90 IASLGRPRPSP 100 (259)
Q Consensus 90 ~a~~~~~~~~~ 100 (259)
+++....+...
T Consensus 79 ~a~~~~~~~~~ 89 (103)
T 2dgu_A 79 FAKPPDQKRKE 89 (103)
T ss_dssp ECCCCCCCCCC
T ss_pred EcCCCcccchh
Confidence 99876654443
No 78
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=1.1e-19 Score=129.48 Aligned_cols=74 Identities=38% Similarity=0.815 Sum_probs=70.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCceEEEEEc
Q 039503 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVIDGRRANCNIA 91 (259)
Q Consensus 17 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~~l~V~~a 91 (259)
+|||+||++++++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++|++ ++ ..|+|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999999899999999999999999999998 66 5699999999875
No 79
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.9e-19 Score=130.83 Aligned_cols=83 Identities=20% Similarity=0.340 Sum_probs=76.4
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEE
Q 039503 9 QFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRAN 87 (259)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~ 87 (259)
...+...++|||+||++++++++|+++|++| .|++|+|+++ .+++++|||||+|.+.++|++||+ +|+ .|+|+.|+
T Consensus 4 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~ 80 (91)
T 2dgw_A 4 GSSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIE 80 (91)
T ss_dssp CCCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEE
T ss_pred CCCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEE
Confidence 3455678999999999999999999999999 9999999999 789999999999999999999999 885 59999999
Q ss_pred EEEcccC
Q 039503 88 CNIASLG 94 (259)
Q Consensus 88 V~~a~~~ 94 (259)
|.+++.+
T Consensus 81 v~~a~~~ 87 (91)
T 2dgw_A 81 VFREKSG 87 (91)
T ss_dssp EEEESSC
T ss_pred EEECCcC
Confidence 9999765
No 80
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.7e-19 Score=133.92 Aligned_cols=81 Identities=12% Similarity=0.185 Sum_probs=73.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHH----HHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMR----RYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRA 86 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l 86 (259)
....++|||+||++++++++|+ ++|++||.|++|+|+.|+.+ ++||||+|.+.++|++||+.+|+ .|+|++|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3457899999999999999999 99999999999999998765 88999999999999999999996 5999999
Q ss_pred EEEEcccCC
Q 039503 87 NCNIASLGR 95 (259)
Q Consensus 87 ~V~~a~~~~ 95 (259)
+|++++...
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999997543
No 81
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-19 Score=138.37 Aligned_cols=80 Identities=14% Similarity=0.236 Sum_probs=71.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC---CCCCCceEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN---PVIDGRRAN 87 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~---~~i~G~~l~ 87 (259)
.+...++|||+||+++++|++|+++|++||+|++|+|+++ ||||||+|++.++|++||+.++ ..|+|+.|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3556899999999999999999999999999999999875 7999999999999999999764 359999999
Q ss_pred EEEcccCCC
Q 039503 88 CNIASLGRP 96 (259)
Q Consensus 88 V~~a~~~~~ 96 (259)
|++++.+..
T Consensus 86 V~~A~~~~~ 94 (105)
T 1sjq_A 86 IQFSNHKEL 94 (105)
T ss_dssp BCCCSSSSC
T ss_pred EEEcCCCCC
Confidence 999976543
No 82
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.1e-19 Score=133.64 Aligned_cols=84 Identities=23% Similarity=0.271 Sum_probs=74.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEE-EEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILE-AVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~-v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~ 89 (259)
.....++|||+||+++++|++|+++|++||.|.+ |+|+.+ .+++++|||||+|.+.++|++||+.....|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEE
Confidence 3456789999999999999999999999999998 888888 78999999999999999999999993356999999999
Q ss_pred EcccCC
Q 039503 90 IASLGR 95 (259)
Q Consensus 90 ~a~~~~ 95 (259)
++....
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 986543
No 83
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.79 E-value=5.8e-20 Score=136.65 Aligned_cols=83 Identities=20% Similarity=0.280 Sum_probs=74.4
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
.....++|||+||++++++++|+++|++||.|++++++.++.+++++|||||+|.+.++|++||+.+|+ .|+|++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 11 GKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp ----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 444578999999999999999999999999999999999999999999999999999999999999885 5999999999
Q ss_pred Eccc
Q 039503 90 IASL 93 (259)
Q Consensus 90 ~a~~ 93 (259)
+++.
T Consensus 91 ~a~s 94 (95)
T 2ek1_A 91 GPSS 94 (95)
T ss_dssp CCC-
T ss_pred eccC
Confidence 8863
No 84
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.79 E-value=1e-19 Score=129.49 Aligned_cols=75 Identities=31% Similarity=0.640 Sum_probs=71.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEEEc
Q 039503 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCNIA 91 (259)
Q Consensus 17 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~~a 91 (259)
+|||+||+.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+..+..|+|++|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999999999999999999999999999999998557799999999875
No 85
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.79 E-value=7.1e-19 Score=137.44 Aligned_cols=84 Identities=24% Similarity=0.386 Sum_probs=77.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
.....++|||+||+.++++++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+.+++ .|+|++|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34457899999999999999999999999999999999998 899999999999999999999999986 5999999999
Q ss_pred EcccCC
Q 039503 90 IASLGR 95 (259)
Q Consensus 90 ~a~~~~ 95 (259)
+|....
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 997643
No 86
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.6e-20 Score=134.12 Aligned_cols=80 Identities=28% Similarity=0.478 Sum_probs=74.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEc
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIA 91 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a 91 (259)
...++|||+||++++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.||+ .|+|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4578999999999999999999999999999999999999999999999999999999999999984 699998887654
Q ss_pred c
Q 039503 92 S 92 (259)
Q Consensus 92 ~ 92 (259)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 87
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.4e-19 Score=138.42 Aligned_cols=83 Identities=14% Similarity=0.298 Sum_probs=76.2
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCE-EEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCceEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDI-LEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVIDGRRANC 88 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I-~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~~l~V 88 (259)
.+...++|||+||++++++++|+++|++||.| .+|+|++|+ +++++|||||+|.+.++|++||+. + ..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 45567899999999999999999999999999 899999998 899999999999999999999998 6 4699999999
Q ss_pred EEcccCC
Q 039503 89 NIASLGR 95 (259)
Q Consensus 89 ~~a~~~~ 95 (259)
+++....
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9997643
No 88
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=4.8e-19 Score=133.45 Aligned_cols=86 Identities=30% Similarity=0.465 Sum_probs=76.2
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceE
Q 039503 8 SQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRA 86 (259)
Q Consensus 8 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l 86 (259)
........++|||+||++++++++|+++|+.|+ +|+|+.++.+++++|||||+|.+.++|++||+.|++ .|+|++|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2fc8_A 8 PNARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 84 (102)
T ss_dssp TSSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 345566789999999999999999999999773 678888888999999999999999999999999885 5999999
Q ss_pred EEEEcccCCC
Q 039503 87 NCNIASLGRP 96 (259)
Q Consensus 87 ~V~~a~~~~~ 96 (259)
+|++++.+..
T Consensus 85 ~V~~a~~~~~ 94 (102)
T 2fc8_A 85 TLDWAKPKGE 94 (102)
T ss_dssp EEEECCCCCS
T ss_pred EEEEecCCCC
Confidence 9999986543
No 89
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=4.3e-19 Score=145.66 Aligned_cols=88 Identities=24% Similarity=0.335 Sum_probs=78.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNI 90 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~ 90 (259)
....++|||+||++++++++|+++|++||.|+.|.|+.++.+++++|||||+|.+.++|++||+.||+ .|+|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999995 59999999999
Q ss_pred cccCCCCCC
Q 039503 91 ASLGRPRPS 99 (259)
Q Consensus 91 a~~~~~~~~ 99 (259)
+.....+..
T Consensus 149 a~~~~~~~~ 157 (165)
T 1rk8_A 149 CFVKGPKRV 157 (165)
T ss_dssp SEECC----
T ss_pred ecCCCCCCC
Confidence 987655443
No 90
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-19 Score=136.82 Aligned_cols=83 Identities=22% Similarity=0.450 Sum_probs=72.6
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecC-CCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCceEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDK-NTGKSKGYGFVTFRDPESARRACDNPN-PVIDGRRAN 87 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~~l~ 87 (259)
......++|||+||++++++++|+++|++|| |++|+|++++ .+++++|||||+|.+.++|++|| .++ ..|+|++|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3455689999999999999999999999999 9999999998 68999999999999999999999 777 469999999
Q ss_pred EEEcccC
Q 039503 88 CNIASLG 94 (259)
Q Consensus 88 V~~a~~~ 94 (259)
|++++.+
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9999754
No 91
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.78 E-value=8e-20 Score=134.68 Aligned_cols=80 Identities=26% Similarity=0.553 Sum_probs=72.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEccc
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIASL 93 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~~ 93 (259)
.++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.+ |++|++.+|+ .|+|++|+|++|..
T Consensus 1 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp CEEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred CcEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 368999999999999999999999999999999999999999999999999999 9999999995 59999999999976
Q ss_pred CC
Q 039503 94 GR 95 (259)
Q Consensus 94 ~~ 95 (259)
..
T Consensus 80 ~~ 81 (90)
T 2ki2_A 80 KK 81 (90)
T ss_dssp --
T ss_pred CC
Confidence 53
No 92
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-19 Score=141.18 Aligned_cols=83 Identities=19% Similarity=0.317 Sum_probs=75.6
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V 88 (259)
......++|||+||++++++++|+++|++||.|.++.++.+..+++++|||||+|.+.++|++||+ +|+ .|+|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 445567899999999999999999999999999997777777899999999999999999999999 884 699999999
Q ss_pred EEccc
Q 039503 89 NIASL 93 (259)
Q Consensus 89 ~~a~~ 93 (259)
.++..
T Consensus 99 ~~a~~ 103 (124)
T 1wel_A 99 HPITK 103 (124)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 99865
No 93
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=8.5e-19 Score=131.96 Aligned_cols=82 Identities=24% Similarity=0.378 Sum_probs=73.1
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V 88 (259)
..+...++|||+||++++++++|+++|++||.| +|+.+ .+++++|||||+|.+.++|++||+.+|+ .|+|++|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 355678999999999999999999999999977 56666 5789999999999999999999999995 599999999
Q ss_pred EEcccCC
Q 039503 89 NIASLGR 95 (259)
Q Consensus 89 ~~a~~~~ 95 (259)
++++.+.
T Consensus 86 ~~a~~~~ 92 (101)
T 2fc9_A 86 ELQGPRG 92 (101)
T ss_dssp EECSSCC
T ss_pred EEcCCCC
Confidence 9998654
No 94
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.78 E-value=6.2e-19 Score=139.83 Aligned_cols=81 Identities=38% Similarity=0.504 Sum_probs=75.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
.+...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+++ .|+|++|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 455689999999999999999999999999999999999999999999999999999999999999995 5999999999
Q ss_pred Ec
Q 039503 90 IA 91 (259)
Q Consensus 90 ~a 91 (259)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 95
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-19 Score=138.62 Aligned_cols=88 Identities=18% Similarity=0.231 Sum_probs=73.3
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
.....++|||+||++++++++|+++|++||.|.+|.+..+..+++++|||||+|.+.++|++||+.|++ .|+|+.|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 344578999999999999999999999999994432222222688999999999999999999999985 5999999999
Q ss_pred EcccCCCCC
Q 039503 90 IASLGRPRP 98 (259)
Q Consensus 90 ~a~~~~~~~ 98 (259)
+++..+.+.
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpx_A 101 FGKNKKQRS 109 (115)
T ss_dssp ECCCCSCCC
T ss_pred EccCCCCCC
Confidence 998765443
No 96
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=128.52 Aligned_cols=78 Identities=35% Similarity=0.589 Sum_probs=71.2
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
.+...++|||+||++++++++|+++|++||.|++|+|+ ++||||+|.+.++|++||+.+++ .|+|++|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 45568999999999999999999999999999999986 68999999999999999999985 5999999999
Q ss_pred EcccCCC
Q 039503 90 IASLGRP 96 (259)
Q Consensus 90 ~a~~~~~ 96 (259)
+++.+..
T Consensus 76 ~a~~~~~ 82 (90)
T 2dnq_A 76 ASKNKSK 82 (90)
T ss_dssp CSSCCCC
T ss_pred ECCCCCC
Confidence 9986544
No 97
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.78 E-value=1.2e-19 Score=145.70 Aligned_cols=82 Identities=20% Similarity=0.242 Sum_probs=72.3
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~~l~V~ 89 (259)
...+.++|||+||+++++|++|+++|++|| |++|+|++|+. ++++|||||+|++.++|++|| .+| ..|+|+.|+|.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 345678999999999999999999999999 77999999986 999999999999999999999 566 56999999999
Q ss_pred EcccCC
Q 039503 90 IASLGR 95 (259)
Q Consensus 90 ~a~~~~ 95 (259)
++....
T Consensus 119 ~a~~~~ 124 (139)
T 2hgn_A 119 LNSTTG 124 (139)
T ss_dssp ECCCSC
T ss_pred ECCCCC
Confidence 987654
No 98
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5e-19 Score=136.03 Aligned_cols=86 Identities=28% Similarity=0.383 Sum_probs=76.9
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHH---HHHhhCCCEEEEEEeecCCCC---CcccEEEEEeCCHHHHHHHHhCCCC-CCC
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMR---RYFEQFGDILEAVIISDKNTG---KSKGYGFVTFRDPESARRACDNPNP-VID 82 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~---~~F~~~G~I~~v~i~~d~~tg---~~kG~aFV~F~~~~~A~~Al~~~~~-~i~ 82 (259)
......++|||+||+++++|++|+ ++|++||.|++|+|++++.++ +++|||||+|.+.++|++||+.||+ .|+
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 445567899999999999999999 999999999999999987754 4569999999999999999999995 599
Q ss_pred CceEEEEEcccCC
Q 039503 83 GRRANCNIASLGR 95 (259)
Q Consensus 83 G~~l~V~~a~~~~ 95 (259)
|++|+|++|+.+.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999997654
No 99
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.77 E-value=6.4e-19 Score=133.70 Aligned_cols=81 Identities=21% Similarity=0.245 Sum_probs=70.6
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-C--CCCc
Q 039503 8 SQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-V--IDGR 84 (259)
Q Consensus 8 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~--i~G~ 84 (259)
+......+++|||+||+++++|++|+++|++||.|++|+|++ .||||||+|++.++|++||+.+++ . |.|+
T Consensus 14 ~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr 87 (100)
T 3r27_A 14 DPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGH 87 (100)
T ss_dssp ---CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTE
T ss_pred ccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCc
Confidence 334455788999999999999999999999999999999975 378999999999999999999883 3 8999
Q ss_pred eEEEEEcccC
Q 039503 85 RANCNIASLG 94 (259)
Q Consensus 85 ~l~V~~a~~~ 94 (259)
+|.|++++.+
T Consensus 88 ~i~V~~S~~k 97 (100)
T 3r27_A 88 PAFVNYSTSQ 97 (100)
T ss_dssp EEEEEECSCS
T ss_pred EEEEEecccc
Confidence 9999999764
No 100
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.7e-18 Score=131.14 Aligned_cols=79 Identities=23% Similarity=0.273 Sum_probs=70.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-C--CCCCceEEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-P--VIDGRRANC 88 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~--~i~G~~l~V 88 (259)
....++|||+||+++++|++|+++|++||.|++|+|+++ ||||||+|++.++|++||+.++ . .|+|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345789999999999999999999999999999998764 7999999999999999999875 2 499999999
Q ss_pred EEcccCCC
Q 039503 89 NIASLGRP 96 (259)
Q Consensus 89 ~~a~~~~~ 96 (259)
++++.++.
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99986544
No 101
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-19 Score=136.43 Aligned_cols=83 Identities=18% Similarity=0.274 Sum_probs=74.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCceEEEEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVIDGRRANCNI 90 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~~l~V~~ 90 (259)
....++|||+||++++++++|+++|++||.|.+ +++.++.+++++|||||+|.+.++|++||+ +| ..|+|++|+|++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 446789999999999999999999999999988 677777789999999999999999999999 88 469999999999
Q ss_pred cccCCC
Q 039503 91 ASLGRP 96 (259)
Q Consensus 91 a~~~~~ 96 (259)
++.++.
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 976543
No 102
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=2.2e-20 Score=144.38 Aligned_cols=85 Identities=31% Similarity=0.437 Sum_probs=78.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEE--------EEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CC
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILE--------AVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VI 81 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i 81 (259)
.+...++|||+||++++++++|+++|++||.|.+ |+|+.++.+++++|||||+|.+.++|++||+.||+ .|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3456789999999999999999999999999999 89999988999999999999999999999999995 59
Q ss_pred CCceEEEEEcccCC
Q 039503 82 DGRRANCNIASLGR 95 (259)
Q Consensus 82 ~G~~l~V~~a~~~~ 95 (259)
+|++|+|++++.+.
T Consensus 83 ~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 83 SGNPIKVSFATRRA 96 (116)
Confidence 99999999997654
No 103
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.2e-18 Score=130.92 Aligned_cols=83 Identities=11% Similarity=0.145 Sum_probs=72.7
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC--C-CCCCce
Q 039503 9 QFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN--P-VIDGRR 85 (259)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~--~-~i~G~~ 85 (259)
.......++|||+||+++++|++|+++|++||.|++|.|+++ ||||||+|++.++|++||+.++ . .|.|++
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 344556789999999999999999999999999999998864 7999999999999999999764 3 499999
Q ss_pred EEEEEcccCCCC
Q 039503 86 ANCNIASLGRPR 97 (259)
Q Consensus 86 l~V~~a~~~~~~ 97 (259)
|.|++++.+...
T Consensus 83 l~V~~a~~~~~~ 94 (101)
T 2cq1_A 83 IYIQYSNHKELK 94 (101)
T ss_dssp CEEEECSCSSCC
T ss_pred EEEEEcCcccCc
Confidence 999999865543
No 104
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.7e-19 Score=135.38 Aligned_cols=83 Identities=31% Similarity=0.554 Sum_probs=75.5
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V 88 (259)
..+...++|||+||+.++++++|+++|++||.|++|+|++++ ++++|||||+|.+.++|++||+.+++ .|+|++|+|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 455678999999999999999999999999999999999885 45899999999999999999999885 599999999
Q ss_pred EEcccC
Q 039503 89 NIASLG 94 (259)
Q Consensus 89 ~~a~~~ 94 (259)
++++.+
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 998754
No 105
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=135.75 Aligned_cols=80 Identities=14% Similarity=0.246 Sum_probs=71.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC---CCCCCceEEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN---PVIDGRRANC 88 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~---~~i~G~~l~V 88 (259)
....++|||+||+++++|++|+++|++||.|++|+|+++ ||||||+|++.++|++||+.++ ..|.|+.|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 345789999999999999999999999999999999875 7999999999999999999886 2599999999
Q ss_pred EEcccCCCC
Q 039503 89 NIASLGRPR 97 (259)
Q Consensus 89 ~~a~~~~~~ 97 (259)
++++.+...
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999865443
No 106
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=133.31 Aligned_cols=83 Identities=19% Similarity=0.421 Sum_probs=75.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CC--------
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VI-------- 81 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i-------- 81 (259)
.+...++|||+||+.++++++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+.||+ .|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 45567899999999999999999999999999999999998 899999999999999999999999885 47
Q ss_pred CCceEEEEEcccC
Q 039503 82 DGRRANCNIASLG 94 (259)
Q Consensus 82 ~G~~l~V~~a~~~ 94 (259)
.++.|.|+++++.
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999998743
No 107
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.77 E-value=7.2e-19 Score=136.82 Aligned_cols=82 Identities=15% Similarity=0.250 Sum_probs=74.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCC---EEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGD---ILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRA 86 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~---I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l 86 (259)
.....++|||+||+++++|++|+++|++||. |++|+|++++. ++++|||||+|.+.++|++||+ +|+ .|+|+.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 3456789999999999999999999999999 89999999986 9999999999999999999999 775 5999999
Q ss_pred EEEEcccC
Q 039503 87 NCNIASLG 94 (259)
Q Consensus 87 ~V~~a~~~ 94 (259)
+|.++...
T Consensus 91 ~V~~a~~~ 98 (118)
T 2db1_A 91 EVFKSHRT 98 (118)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99998653
No 108
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=7.9e-19 Score=133.75 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=70.2
Q ss_pred CCCccEEEEcCCCC-CCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-C--CCCCceEE
Q 039503 12 DTTFTKVFVGGLAW-ETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-P--VIDGRRAN 87 (259)
Q Consensus 12 ~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~--~i~G~~l~ 87 (259)
....++|||+||++ +++|++|+++|++||.|++|+|+++ ++||||+|++.++|++||+.|+ . .|+|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34678999999999 9999999999999999999999865 5899999999999999999887 2 39999999
Q ss_pred EEEcccCC
Q 039503 88 CNIASLGR 95 (259)
Q Consensus 88 V~~a~~~~ 95 (259)
|++|+..+
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99998543
No 109
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=124.50 Aligned_cols=78 Identities=28% Similarity=0.521 Sum_probs=71.0
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCC-CC-CCCCceE
Q 039503 9 QFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP-NP-VIDGRRA 86 (259)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~-~~-~i~G~~l 86 (259)
...+...++|||+||+.++++++|+++|++||.|++|+|+++ +|||||+|.+.++|++||+.| ++ .|+|++|
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 345667899999999999999999999999999999999864 799999999999999999998 75 5999999
Q ss_pred EEEEcc
Q 039503 87 NCNIAS 92 (259)
Q Consensus 87 ~V~~a~ 92 (259)
+|++++
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 999974
No 110
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=131.88 Aligned_cols=83 Identities=22% Similarity=0.319 Sum_probs=74.3
Q ss_pred CCCCCccEEEEcCCCCCC------CHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCC
Q 039503 10 FGDTTFTKVFVGGLAWET------PTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VID 82 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~------te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~ 82 (259)
..+...++|||+||++++ ++++|+++|++||.|++|+|+ +.+|+++|||||+|.+.++|++||+.||+ .|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 344557899999999999 789999999999999999988 46789999999999999999999999996 599
Q ss_pred Cc-eEEEEEcccC
Q 039503 83 GR-RANCNIASLG 94 (259)
Q Consensus 83 G~-~l~V~~a~~~ 94 (259)
|+ +|+|+++...
T Consensus 88 g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 88 KQHTFRVNLFTDF 100 (105)
T ss_dssp TTCEEEEECSCCC
T ss_pred CCceEEEEEcchH
Confidence 98 9999998643
No 111
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.76 E-value=8.5e-19 Score=140.23 Aligned_cols=80 Identities=15% Similarity=0.247 Sum_probs=74.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCC---EEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCceEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGD---ILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVIDGRRAN 87 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~---I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~~l~ 87 (259)
....++|||+||++++||++|+++|++||. |++|+|++|+. ++++|||||+|.+.++|++||+ +| ..|+|+.|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 446789999999999999999999999999 89999999987 9999999999999999999999 88 469999999
Q ss_pred EEEccc
Q 039503 88 CNIASL 93 (259)
Q Consensus 88 V~~a~~ 93 (259)
|.++..
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 999864
No 112
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=130.66 Aligned_cols=76 Identities=29% Similarity=0.477 Sum_probs=70.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCceEEEEEcccC
Q 039503 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVIDGRRANCNIASLG 94 (259)
Q Consensus 16 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~~l~V~~a~~~ 94 (259)
++|||+||++++++++|+++|++||.|++|+|+.+ ++|||||+|.+.++|++||+.|+ ..|+|++|+|++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 68999999999999999999988 5699999999999876
Q ss_pred CC
Q 039503 95 RP 96 (259)
Q Consensus 95 ~~ 96 (259)
..
T Consensus 76 ~~ 77 (101)
T 2hvz_A 76 PR 77 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 113
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.7e-18 Score=131.23 Aligned_cols=80 Identities=31% Similarity=0.511 Sum_probs=72.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
.+...++|||+||+.++++++|+++|++||.|++|+|+.+ +|||||+|.+.++|++||+.|++ .|+|++|+|+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999875 78999999999999999999985 5999999999
Q ss_pred EcccCCC
Q 039503 90 IASLGRP 96 (259)
Q Consensus 90 ~a~~~~~ 96 (259)
+++....
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9986543
No 114
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.4e-18 Score=125.99 Aligned_cols=79 Identities=25% Similarity=0.437 Sum_probs=71.1
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V 88 (259)
......++|||+||++++++++|+++|++||.|++|+|+ ++||||+|.+.++|++||+.||+ .|+|++|+|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 445678999999999999999999999999999999997 34999999999999999999985 599999999
Q ss_pred EEcccCCC
Q 039503 89 NIASLGRP 96 (259)
Q Consensus 89 ~~a~~~~~ 96 (259)
++++.+..
T Consensus 77 ~~a~~~~~ 84 (92)
T 2dgt_A 77 QLSTSRLR 84 (92)
T ss_dssp EESSCCCS
T ss_pred EEccCCCC
Confidence 99976543
No 115
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.75 E-value=7.9e-19 Score=134.06 Aligned_cols=84 Identities=12% Similarity=0.219 Sum_probs=76.0
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhhCCC---EEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCc
Q 039503 9 QFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGD---ILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVIDGR 84 (259)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~---I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~ 84 (259)
.......++|||+||++++++++|+++|+.||. |.+|+|++|+. |+++|||||+|.+.++|++||+ ++ ..|+|+
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQR 82 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSS
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCe
Confidence 344567889999999999999999999999998 89999999987 9999999999999999999999 77 469999
Q ss_pred eEEEEEcccC
Q 039503 85 RANCNIASLG 94 (259)
Q Consensus 85 ~l~V~~a~~~ 94 (259)
.|+|.++...
T Consensus 83 ~i~V~~a~~~ 92 (107)
T 2lmi_A 83 YVEVYEINNE 92 (107)
T ss_dssp CCCCEECCHH
T ss_pred EEEEEECCHH
Confidence 9999998753
No 116
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.2e-18 Score=128.06 Aligned_cols=81 Identities=16% Similarity=0.300 Sum_probs=71.5
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V 88 (259)
......++|||+||++++++++|+++|++||.|. ++|+.+ +++|||||+|.+.++|++||+.||+ .|+|++|+|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3445578999999999999999999999999997 677654 5789999999999999999999985 599999999
Q ss_pred EEcccCC
Q 039503 89 NIASLGR 95 (259)
Q Consensus 89 ~~a~~~~ 95 (259)
++++.++
T Consensus 89 ~~a~~~~ 95 (97)
T 2e5j_A 89 ALARQQR 95 (97)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9997654
No 117
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.9e-18 Score=125.79 Aligned_cols=79 Identities=27% Similarity=0.487 Sum_probs=70.9
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V 88 (259)
..+...++|||+||++++++++|+++|++||.|++|+|+ ++||||+|.+.++|++||+.||+ .|+|++|+|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 345568899999999999999999999999999999997 34999999999999999999985 599999999
Q ss_pred EEcccCCC
Q 039503 89 NIASLGRP 96 (259)
Q Consensus 89 ~~a~~~~~ 96 (259)
++++..+.
T Consensus 76 ~~a~~~~~ 83 (90)
T 2dnp_A 76 ELSTKGQK 83 (90)
T ss_dssp EESCCCCC
T ss_pred EECCCCCC
Confidence 99986543
No 118
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3e-18 Score=128.13 Aligned_cols=78 Identities=23% Similarity=0.476 Sum_probs=70.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCC--CceEEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VID--GRRANC 88 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~--G~~l~V 88 (259)
....++|||+||++++++++|+++|++||.|++|+|+++ ++||||+|.+.++|++||+.||+ .|+ |++|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345689999999999999999999999999999998754 78999999999999999999985 588 999999
Q ss_pred EEcccCC
Q 039503 89 NIASLGR 95 (259)
Q Consensus 89 ~~a~~~~ 95 (259)
++++.+.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998654
No 119
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=1.5e-18 Score=125.67 Aligned_cols=73 Identities=23% Similarity=0.397 Sum_probs=66.3
Q ss_pred ccEEEEcCCCCCC------CHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCc-eE
Q 039503 15 FTKVFVGGLAWET------PTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGR-RA 86 (259)
Q Consensus 15 ~~~lfVgnLp~~~------te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~-~l 86 (259)
.++|||+||+.++ ++++|+++|++||.|++|+|+ +.+++++|||||+|.+.++|++||+.||+ .|+|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3789999999999 779999999999999999987 45789999999999999999999999995 59999 88
Q ss_pred EEE
Q 039503 87 NCN 89 (259)
Q Consensus 87 ~V~ 89 (259)
+|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 763
No 120
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.75 E-value=2.3e-18 Score=136.01 Aligned_cols=79 Identities=25% Similarity=0.331 Sum_probs=72.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEE--EEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEEE
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDIL--EAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCNI 90 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~--~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~~ 90 (259)
...++|||+||+++++|++|+++|++| .|+ +|+|++|+. |+++|||||+|.+.++|++||+.++..|+|+.|+|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 456899999999999999999999999 677 899999987 9999999999999999999999866779999999998
Q ss_pred ccc
Q 039503 91 ASL 93 (259)
Q Consensus 91 a~~ 93 (259)
+..
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 864
No 121
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.75 E-value=1.8e-18 Score=130.34 Aligned_cols=83 Identities=31% Similarity=0.588 Sum_probs=75.4
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCNI 90 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~~ 90 (259)
.+...++|||+||++++++++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+ ....|+|++|.|.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGP 82 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEE
Confidence 34467899999999999999999999999999999999998 89999999999999999999999 33569999999999
Q ss_pred cccCC
Q 039503 91 ASLGR 95 (259)
Q Consensus 91 a~~~~ 95 (259)
+..+.
T Consensus 83 a~~~~ 87 (102)
T 2xs2_A 83 AIRKQ 87 (102)
T ss_dssp EEECC
T ss_pred CCcCc
Confidence 87654
No 122
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=5.8e-18 Score=127.04 Aligned_cols=80 Identities=29% Similarity=0.433 Sum_probs=72.0
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V 88 (259)
......++|||+||++++++++|+++|++||.|++|+|+++ +|||||+|.+.++|++||+.|++ .|+|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 33456789999999999999999999999999999999754 78999999999999999999985 599999999
Q ss_pred EEcccCC
Q 039503 89 NIASLGR 95 (259)
Q Consensus 89 ~~a~~~~ 95 (259)
++++.+.
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpj_A 84 RFACHSA 90 (99)
T ss_dssp EESSCCS
T ss_pred EEcCCCC
Confidence 9997654
No 123
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.75 E-value=2.3e-18 Score=132.04 Aligned_cols=82 Identities=24% Similarity=0.431 Sum_probs=71.0
Q ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCce
Q 039503 7 RSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRR 85 (259)
Q Consensus 7 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~ 85 (259)
+....+...++|||+||++++++++|+++|++||.|++|+|+ +|||||+|.+.++|++||+.||+ .|+|++
T Consensus 23 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (108)
T 2jvo_A 23 HRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQP 94 (108)
T ss_dssp -----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred cccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 334566788999999999999999999999999999999987 78999999999999999999985 599999
Q ss_pred EEEEEcccCCC
Q 039503 86 ANCNIASLGRP 96 (259)
Q Consensus 86 l~V~~a~~~~~ 96 (259)
|.|++++....
T Consensus 95 l~V~~a~~~~~ 105 (108)
T 2jvo_A 95 LEVVYSKLPAK 105 (108)
T ss_dssp CEEESCSCCC-
T ss_pred EEEEEecCCCC
Confidence 99999986543
No 124
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=6.5e-18 Score=133.53 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=72.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHH----HHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMR----RYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRA 86 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l 86 (259)
....++|||+||++++++++|+ ++|++||.|++|.|.+ ++++||||||+|.+.++|++||+.||+ .|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4457899999999999999876 6999999999988754 578899999999999999999999995 5999999
Q ss_pred EEEEcccCC
Q 039503 87 NCNIASLGR 95 (259)
Q Consensus 87 ~V~~a~~~~ 95 (259)
+|++++.+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999998654
No 125
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.74 E-value=6.5e-18 Score=129.27 Aligned_cols=76 Identities=26% Similarity=0.531 Sum_probs=69.0
Q ss_pred CCccEEEEcCCCCC-CCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEE
Q 039503 13 TTFTKVFVGGLAWE-TPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNI 90 (259)
Q Consensus 13 ~~~~~lfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~ 90 (259)
...++|||+||+++ +++++|+++|++||.|++|+| +++||||+|.+.++|++||+.|++ .|+|++|+|++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34589999999999 999999999999999999988 489999999999999999999985 59999999999
Q ss_pred cccCCC
Q 039503 91 ASLGRP 96 (259)
Q Consensus 91 a~~~~~ 96 (259)
++..+.
T Consensus 97 a~~~~~ 102 (110)
T 1wf1_A 97 AGEPKP 102 (110)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 975443
No 126
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=124.23 Aligned_cols=78 Identities=19% Similarity=0.399 Sum_probs=68.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNI 90 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~ 90 (259)
....++|||+||++++++++|+++|++||.|.+| +.++.+++ ||||+|.+.++|++||+ +++ .|+|+.|.|++
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456899999999999999999999999999987 56665555 99999999999999999 885 59999999998
Q ss_pred cccCC
Q 039503 91 ASLGR 95 (259)
Q Consensus 91 a~~~~ 95 (259)
+..+.
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 86543
No 127
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=124.87 Aligned_cols=77 Identities=25% Similarity=0.373 Sum_probs=69.4
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhC--CCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQF--GDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRAN 87 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~ 87 (259)
.....++|||+||++++++++|+++|++| |.|++|+++ +|||||+|.+.++|++||+.||+ .|+|++|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34467899999999999999999999999 999999874 67999999999999999999995 59999999
Q ss_pred EEEcccCC
Q 039503 88 CNIASLGR 95 (259)
Q Consensus 88 V~~a~~~~ 95 (259)
|++++.+.
T Consensus 83 v~~a~~~~ 90 (99)
T 2cpd_A 83 VTLAKPVD 90 (99)
T ss_dssp EECCCCCC
T ss_pred EEECCCCC
Confidence 99997654
No 128
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=2.1e-18 Score=133.32 Aligned_cols=78 Identities=10% Similarity=0.072 Sum_probs=69.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEE
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFG-DILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNI 90 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~ 90 (259)
...++|||+||++++++++|+++|++|| +|+.|+|+.+ +++|||||+|.+.++|++||+.||+ .|+|++|+|++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3467999999999999999999999999 9999988643 4799999999999999999999996 59999999999
Q ss_pred cccC
Q 039503 91 ASLG 94 (259)
Q Consensus 91 a~~~ 94 (259)
++..
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8754
No 129
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.6e-18 Score=132.95 Aligned_cols=80 Identities=14% Similarity=0.214 Sum_probs=70.9
Q ss_pred CCCCccEEEEcCCCCC-CCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC--C-CCCCceE
Q 039503 11 GDTTFTKVFVGGLAWE-TPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN--P-VIDGRRA 86 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~--~-~i~G~~l 86 (259)
.....++|||+||+++ ++|++|+++|++||.|++|+|++ +||||||+|++.++|++||+.++ . .|+|++|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3456889999999998 99999999999999999999974 37999999999999999999875 2 4999999
Q ss_pred EEEEcccCCC
Q 039503 87 NCNIASLGRP 96 (259)
Q Consensus 87 ~V~~a~~~~~ 96 (259)
+|++++..+.
T Consensus 95 ~V~~a~~~~~ 104 (112)
T 1x4f_A 95 KVDLSEKYKK 104 (112)
T ss_dssp EEEEECSCSS
T ss_pred EEEECccccc
Confidence 9999976543
No 130
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.74 E-value=3e-18 Score=132.64 Aligned_cols=76 Identities=18% Similarity=0.255 Sum_probs=64.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCce-----E
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRR-----A 86 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~-----l 86 (259)
...++|||+||+++++|++|+++|++||+|++|+|+.+ |||||+|++.++|++||+.||+ +|+|++ |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45789999999999999999999999999999999765 8999999999999999999995 599988 7
Q ss_pred EEEEcccCC
Q 039503 87 NCNIASLGR 95 (259)
Q Consensus 87 ~V~~a~~~~ 95 (259)
+|+.+....
T Consensus 87 ~v~~~~~~~ 95 (115)
T 3beg_B 87 RVKVDGPRS 95 (115)
T ss_dssp EEEECC---
T ss_pred EeccCCCCC
Confidence 777665543
No 131
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.74 E-value=3e-18 Score=126.64 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=67.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEcc
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIAS 92 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~ 92 (259)
...|||+||++.+||++|+++|.+||+|++++|+. +||||||+|.+.++|++||+.||. +|.|+.|+|++|+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 56899999999999999999999999999999975 599999999999999999999996 5999999999984
No 132
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=5.5e-18 Score=144.12 Aligned_cols=84 Identities=27% Similarity=0.400 Sum_probs=75.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
.....++|||+||+++++|++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.+++ .+.|+.|+|.
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 345678999999999999999999999999999999999999999999999999999999999999995 5999999999
Q ss_pred EcccC
Q 039503 90 IASLG 94 (259)
Q Consensus 90 ~a~~~ 94 (259)
++...
T Consensus 91 ~~~~~ 95 (213)
T 4f02_A 91 WSQRD 95 (213)
T ss_dssp ECCCC
T ss_pred ccccc
Confidence 88643
No 133
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.2e-18 Score=126.93 Aligned_cols=79 Identities=22% Similarity=0.439 Sum_probs=68.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCC-EEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-C-CCCceEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGD-ILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-V-IDGRRAN 87 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~-I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~-i~G~~l~ 87 (259)
.....++|||+||++++++++|+++|++||. |..+.+. ++|||||+|.+.++|++||+.+|+ . |+|++|+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 3456789999999999999999999999999 5555552 489999999999999999999886 4 9999999
Q ss_pred EEEcccCCC
Q 039503 88 CNIASLGRP 96 (259)
Q Consensus 88 V~~a~~~~~ 96 (259)
|++++.+..
T Consensus 77 v~~a~~~~~ 85 (93)
T 2cqh_A 77 VDYSVSKKL 85 (93)
T ss_dssp EEECCCCCC
T ss_pred EEEccCccc
Confidence 999986543
No 134
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=3.5e-18 Score=127.74 Aligned_cols=77 Identities=23% Similarity=0.490 Sum_probs=69.1
Q ss_pred CCCccEEEEcCCCC-CCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 12 DTTFTKVFVGGLAW-ETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 12 ~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
....++|||+||++ ++++++|+++|++||.|++|+|. +|||||+|.+.++|++||+.+++ .|.|++|+|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45688999999998 99999999999999999999984 78999999999999999999885 5999999999
Q ss_pred EcccCCC
Q 039503 90 IASLGRP 96 (259)
Q Consensus 90 ~a~~~~~ 96 (259)
+++....
T Consensus 79 ~a~~~~~ 85 (96)
T 2kvi_A 79 VSSSNAR 85 (96)
T ss_dssp EEECCCC
T ss_pred EcCcCCC
Confidence 9986543
No 135
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.6e-18 Score=129.31 Aligned_cols=76 Identities=18% Similarity=0.289 Sum_probs=69.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNI 90 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~ 90 (259)
+...++|||+||+.++++++|+++|++||.|++|+|++ ++|||||+|.+.++|++||+.+|+ .|+|++|+|++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 44578999999999999999999999999999999973 589999999999999999999985 59999999999
Q ss_pred ccc
Q 039503 91 ASL 93 (259)
Q Consensus 91 a~~ 93 (259)
++.
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 864
No 136
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=4.2e-18 Score=131.14 Aligned_cols=77 Identities=21% Similarity=0.352 Sum_probs=70.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCceEEEEEcc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVIDGRRANCNIAS 92 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~~l~V~~a~ 92 (259)
..++|||+||+++++|++|+++|+.| .|++|+|++|+. |+++|||||+|.+.++|++||+ +| ..|+|+.|+|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECC
Confidence 45799999999999999999999999 899999999975 9999999999999999999995 66 46999999999886
Q ss_pred c
Q 039503 93 L 93 (259)
Q Consensus 93 ~ 93 (259)
.
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 137
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.8e-18 Score=134.96 Aligned_cols=80 Identities=21% Similarity=0.278 Sum_probs=71.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCE----EEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEE
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDI----LEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANC 88 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I----~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V 88 (259)
...++|||+||+++++|++|+++|++||.| .+|+|++|+ +|+++|||||+|.+.++|++||+.....|+|+.|+|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 457899999999999999999999999976 689999985 899999999999999999999998335699999999
Q ss_pred EEccc
Q 039503 89 NIASL 93 (259)
Q Consensus 89 ~~a~~ 93 (259)
..+..
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 138
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.73 E-value=9.9e-18 Score=139.13 Aligned_cols=86 Identities=31% Similarity=0.569 Sum_probs=75.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEEEcc
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCNIAS 92 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~~a~ 92 (259)
...++|||+||++++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.++..|+|+.|.|+++.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecC
Confidence 34689999999999999999999999999999999999989999999999999999999999985567999999999998
Q ss_pred cCCCCC
Q 039503 93 LGRPRP 98 (259)
Q Consensus 93 ~~~~~~ 98 (259)
.+....
T Consensus 182 ~k~~~~ 187 (196)
T 1l3k_A 182 SKQEMA 187 (196)
T ss_dssp ------
T ss_pred ChhHhc
Confidence 765543
No 139
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.73 E-value=1e-17 Score=139.52 Aligned_cols=81 Identities=23% Similarity=0.395 Sum_probs=75.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEc
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIA 91 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a 91 (259)
...++|||+||++++++++|+++|++||.|++|.|+.++ +++++|||||+|.+.++|++||+.+++ .|+|+.|+|+++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 346899999999999999999999999999999999998 899999999999999999999999995 599999999998
Q ss_pred ccC
Q 039503 92 SLG 94 (259)
Q Consensus 92 ~~~ 94 (259)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 754
No 140
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=4.7e-18 Score=126.62 Aligned_cols=81 Identities=20% Similarity=0.324 Sum_probs=71.7
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V 88 (259)
..+...++|||+||++++++++|+++|++||.|..+ ..+++++|||||+|.+.++|++||+.+++ .|+|++|+|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 445568999999999999999999999999988766 23688999999999999999999999995 599999999
Q ss_pred EEcccCC
Q 039503 89 NIASLGR 95 (259)
Q Consensus 89 ~~a~~~~ 95 (259)
++++.+.
T Consensus 86 ~~a~~~~ 92 (96)
T 1fjc_A 86 YYTGEKG 92 (96)
T ss_dssp EECSSSC
T ss_pred EEcCCCC
Confidence 9997654
No 141
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=1.4e-17 Score=134.13 Aligned_cols=81 Identities=23% Similarity=0.387 Sum_probs=73.4
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V 88 (259)
......++|||+||++++++++|+++|++||.|++|+|+++ ++|||||+|.+.++|++||+.||+ .|+|++|+|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34556799999999999999999999999999999999876 589999999999999999999885 599999999
Q ss_pred EEcccCC
Q 039503 89 NIASLGR 95 (259)
Q Consensus 89 ~~a~~~~ 95 (259)
++++.++
T Consensus 143 ~~a~~~~ 149 (150)
T 2i2y_A 143 ELSNGEK 149 (150)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9997653
No 142
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.72 E-value=1.8e-17 Score=127.50 Aligned_cols=81 Identities=19% Similarity=0.302 Sum_probs=73.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNI 90 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~ 90 (259)
....++|||+||++++++++|+++|++||.|++|.|+.+ ++++|||||+|.+.++|++||+.+|+ .|+|+.|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345789999999999999999999999999999999876 45699999999999999999999985 59999999999
Q ss_pred cccCC
Q 039503 91 ASLGR 95 (259)
Q Consensus 91 a~~~~ 95 (259)
++..+
T Consensus 82 a~~~~ 86 (115)
T 3lqv_A 82 YNANR 86 (115)
T ss_dssp CCHHH
T ss_pred ecCCh
Confidence 97643
No 143
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.72 E-value=2.2e-17 Score=137.02 Aligned_cols=85 Identities=34% Similarity=0.590 Sum_probs=78.0
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCN 89 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~ 89 (259)
......++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+..+..|+|+.|.|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPK 87 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeee
Confidence 44557899999999999999999999999999999999999999999999999999999999999995567999999999
Q ss_pred EcccC
Q 039503 90 IASLG 94 (259)
Q Consensus 90 ~a~~~ 94 (259)
++...
T Consensus 88 ~~~~~ 92 (196)
T 1l3k_A 88 RAVSR 92 (196)
T ss_dssp ECCC-
T ss_pred cccCc
Confidence 98754
No 144
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.5e-17 Score=121.33 Aligned_cols=78 Identities=23% Similarity=0.330 Sum_probs=69.3
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
.....++|||+|| ++++++|+++|++||.|++|+|. +++|||||+|.+.++|++||+.|++ .|+|++|+|+
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3446789999996 89999999999999999999984 4689999999999999999999995 5999999999
Q ss_pred EcccCCC
Q 039503 90 IASLGRP 96 (259)
Q Consensus 90 ~a~~~~~ 96 (259)
+++.+..
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9976544
No 145
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.72 E-value=2e-17 Score=124.18 Aligned_cols=76 Identities=25% Similarity=0.552 Sum_probs=68.9
Q ss_pred CCCCccEEEEcCCCC-CCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEE
Q 039503 11 GDTTFTKVFVGGLAW-ETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V 88 (259)
.....++|||+||++ ++++++|+++|++||.|++|+|. +|||||+|.+.++|++||+.+++ .|+|++|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 445689999999998 99999999999999999999883 78999999999999999999986 499999999
Q ss_pred EEcccC
Q 039503 89 NIASLG 94 (259)
Q Consensus 89 ~~a~~~ 94 (259)
++++.+
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 998754
No 146
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.72 E-value=5.3e-18 Score=126.40 Aligned_cols=81 Identities=20% Similarity=0.343 Sum_probs=72.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHH----HHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMR----RYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRA 86 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l 86 (259)
....++|||+||++++++++|+ ++|++||.|.+|+|++ +++++|||||+|.+.++|++|++.+++ .|+|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3467899999999999999999 9999999999998874 477899999999999999999999985 5999999
Q ss_pred EEEEcccCC
Q 039503 87 NCNIASLGR 95 (259)
Q Consensus 87 ~V~~a~~~~ 95 (259)
+|++++...
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998654
No 147
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.72 E-value=2.9e-17 Score=135.01 Aligned_cols=80 Identities=16% Similarity=0.312 Sum_probs=70.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCC--ceEEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDG--RRANC 88 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G--~~l~V 88 (259)
.....+|||+||+++++|++|+++|++||+|++|+|+.++ +++||||+|++.++|++|++.||+ .|.| ++|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 4457789999999999999999999999999999987542 578999999999999999999996 5855 99999
Q ss_pred EEcccCC
Q 039503 89 NIASLGR 95 (259)
Q Consensus 89 ~~a~~~~ 95 (259)
++++.+.
T Consensus 119 ~~Ak~~~ 125 (164)
T 1sjr_A 119 DFSKLTS 125 (164)
T ss_dssp EECSSSS
T ss_pred EEecCCc
Confidence 9998764
No 148
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.6e-18 Score=124.06 Aligned_cols=78 Identities=27% Similarity=0.525 Sum_probs=67.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEEEcc
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCNIAS 92 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~~a~ 92 (259)
...++|||+||+++++|++|+++|++||.|++|+|+++ ++|||||+|.+.++|++|+.. ...++|++|+|++++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 45789999999999999999999999999999999865 689999999999999876443 334799999999987
Q ss_pred cCCC
Q 039503 93 LGRP 96 (259)
Q Consensus 93 ~~~~ 96 (259)
.+..
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 149
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.72 E-value=1.2e-17 Score=123.55 Aligned_cols=79 Identities=27% Similarity=0.494 Sum_probs=63.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCNI 90 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~~ 90 (259)
.....++|||+||+++++|++|+++|++||.|++|+|+++ +||||||+|.+.++|+++... ...+.|++|.|++
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~-~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGE-DLIIKGISVHISN 80 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTC-EEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCC-CcccCCEEEEEEE
Confidence 3456789999999999999999999999999999999874 699999999999999954322 2347899999999
Q ss_pred cccCC
Q 039503 91 ASLGR 95 (259)
Q Consensus 91 a~~~~ 95 (259)
+..+.
T Consensus 81 a~~k~ 85 (89)
T 3d2w_A 81 AEPKH 85 (89)
T ss_dssp CC---
T ss_pred cCCCC
Confidence 97654
No 150
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1e-17 Score=132.05 Aligned_cols=79 Identities=14% Similarity=0.207 Sum_probs=70.7
Q ss_pred cEEEEcCC----CCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCC----H-HH---HHHHHh--CCCC-C
Q 039503 16 TKVFVGGL----AWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRD----P-ES---ARRACD--NPNP-V 80 (259)
Q Consensus 16 ~~lfVgnL----p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~----~-~~---A~~Al~--~~~~-~ 80 (259)
++|||+|| +++++|++|+++|+.||+|.+|+++.|+.||+++|||||+|.+ . ++ |.+||+ .+++ .
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 3 32 899988 7785 5
Q ss_pred CCCceEEEEEcccC
Q 039503 81 IDGRRANCNIASLG 94 (259)
Q Consensus 81 i~G~~l~V~~a~~~ 94 (259)
|+|++|+|++.+.+
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999987643
No 151
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4.7e-18 Score=131.13 Aligned_cols=80 Identities=26% Similarity=0.402 Sum_probs=70.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCC---CCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNT---GKSKGYGFVTFRDPESARRACDNPNPVIDGRRANC 88 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V 88 (259)
....++|||+||+++++|++|+++|++||.|+ ++++.++.+ |+++|||||+|.+.++|++||+.++ .++|+.|.|
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-~~~G~~~~~ 82 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-EEDGKLYLC 82 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-EETTEEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-hcCCcEEEe
Confidence 34578999999999999999999999999999 888888777 7999999999999999999999884 377887777
Q ss_pred EEccc
Q 039503 89 NIASL 93 (259)
Q Consensus 89 ~~a~~ 93 (259)
..+..
T Consensus 83 ~~~~~ 87 (114)
T 2dnl_A 83 VSSPT 87 (114)
T ss_dssp ECCSS
T ss_pred ccCCC
Confidence 65543
No 152
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-17 Score=127.90 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=70.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNI 90 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~ 90 (259)
+...++|||+||++++++++|+++|++||.|++|.|+. +++||||+|.+.++|++||+.||+ .|+|+.|.|++
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 33578999999999999999999999999999998864 478999999999999999999995 59999999999
Q ss_pred cccCC
Q 039503 91 ASLGR 95 (259)
Q Consensus 91 a~~~~ 95 (259)
++...
T Consensus 81 a~~~~ 85 (111)
T 1whx_A 81 APIGV 85 (111)
T ss_dssp EETTT
T ss_pred CCCCc
Confidence 97643
No 153
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=4.4e-17 Score=131.20 Aligned_cols=82 Identities=32% Similarity=0.534 Sum_probs=77.0
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
.....++|||+||+.++++++|+++|++||.|.+++|+.++.+++++|||||+|.+.++|++||+.+|+ .|+|++|+|+
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 445678999999999999999999999999999999999999999999999999999999999999995 5999999999
Q ss_pred Ecc
Q 039503 90 IAS 92 (259)
Q Consensus 90 ~a~ 92 (259)
+|+
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 986
No 154
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.71 E-value=2.3e-18 Score=137.80 Aligned_cols=89 Identities=21% Similarity=0.374 Sum_probs=72.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEE--E---eecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCc
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAV--I---ISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGR 84 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~--i---~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~ 84 (259)
.....++|||+||++++++++|+++|++||.|..|. + ++...+++++|||||+|.+.++|++||+.||+ .|+|+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 345678999999999999999999999999987641 1 11123688999999999999999999999996 59999
Q ss_pred eEEEEEcccCCCCCC
Q 039503 85 RANCNIASLGRPRPS 99 (259)
Q Consensus 85 ~l~V~~a~~~~~~~~ 99 (259)
.|.|++++..+.+..
T Consensus 121 ~l~V~~a~~~~~~~~ 135 (143)
T 3egn_A 121 PMVVQFARSARPKQD 135 (143)
T ss_dssp ECEEEECCCSCC---
T ss_pred EEEEEECCCCCCccC
Confidence 999999987655443
No 155
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.71 E-value=4.8e-17 Score=136.97 Aligned_cols=82 Identities=27% Similarity=0.534 Sum_probs=77.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEcc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIAS 92 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~ 92 (259)
..++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.||+ .|+|+.|+|++++
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 457999999999999999999999999999999999999999999999999999999999999985 5999999999998
Q ss_pred cCC
Q 039503 93 LGR 95 (259)
Q Consensus 93 ~~~ 95 (259)
...
T Consensus 204 ~~~ 206 (216)
T 2qfj_A 204 TPP 206 (216)
T ss_dssp SCS
T ss_pred CCC
Confidence 653
No 156
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.71 E-value=4.1e-17 Score=131.47 Aligned_cols=80 Identities=31% Similarity=0.492 Sum_probs=75.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEccc
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIASL 93 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~~ 93 (259)
.++|||+||+.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++.+++ .|.|+.|+|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999999998999999999999999999999999885 59999999999875
Q ss_pred C
Q 039503 94 G 94 (259)
Q Consensus 94 ~ 94 (259)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 157
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=3.2e-17 Score=122.00 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=70.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEE-EEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEA-VIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v-~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V 88 (259)
.....++|||+||++++++++|+++|++||.|++| .|+.++.+++ |||+|.+.++|++||+.||+ .|+|++|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34457899999999999999999999999999999 4888765433 99999999999999999985 599999999
Q ss_pred EEcccC
Q 039503 89 NIASLG 94 (259)
Q Consensus 89 ~~a~~~ 94 (259)
++++.+
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 999765
No 158
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.70 E-value=3.3e-17 Score=132.54 Aligned_cols=82 Identities=28% Similarity=0.392 Sum_probs=76.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEcc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIAS 92 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~ 92 (259)
..++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++|++.+++ .|.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 368999999999999999999999999999999999998999999999999999999999998885 5999999999987
Q ss_pred cCC
Q 039503 93 LGR 95 (259)
Q Consensus 93 ~~~ 95 (259)
...
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 543
No 159
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.69 E-value=9.2e-17 Score=133.45 Aligned_cols=83 Identities=25% Similarity=0.441 Sum_probs=77.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEc
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIA 91 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a 91 (259)
...++|||+||++++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.||+ .|+|+.|+|+++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 5678999999999999999999999999999999999998999999999999999999999999985 599999999999
Q ss_pred ccCC
Q 039503 92 SLGR 95 (259)
Q Consensus 92 ~~~~ 95 (259)
+.+.
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 160
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.69 E-value=2.6e-17 Score=121.06 Aligned_cols=75 Identities=16% Similarity=0.260 Sum_probs=68.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEc
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIA 91 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a 91 (259)
...++|||+||+++++|++|+++|++| .|++|+|. +++|||||+|.+.++|++||+.+|+ .|+|++|+|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 356899999999999999999999999 99999884 5789999999999999999999996 599999999998
Q ss_pred ccC
Q 039503 92 SLG 94 (259)
Q Consensus 92 ~~~ 94 (259)
..+
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 161
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.68 E-value=8.9e-17 Score=130.64 Aligned_cols=80 Identities=25% Similarity=0.415 Sum_probs=75.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEc
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIA 91 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a 91 (259)
...++|||+||+.++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++|++.+|+ .|+|++|.|++|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 3468999999999999999999999999999999999988999999999999999999999999985 599999999987
Q ss_pred c
Q 039503 92 S 92 (259)
Q Consensus 92 ~ 92 (259)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 162
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.68 E-value=5.5e-17 Score=131.26 Aligned_cols=80 Identities=31% Similarity=0.651 Sum_probs=74.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCceEEEEEcc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVIDGRRANCNIAS 92 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~~l~V~~a~ 92 (259)
..++|||+||+.++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++|++ ++ ..|+|++|+|++|.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 35689999999999999999999999999999999998899999999999999999999999 66 56999999999997
Q ss_pred cC
Q 039503 93 LG 94 (259)
Q Consensus 93 ~~ 94 (259)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 163
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.67 E-value=9.3e-17 Score=135.20 Aligned_cols=81 Identities=30% Similarity=0.479 Sum_probs=72.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEcc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIAS 92 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~ 92 (259)
..++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+++ .|+|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 468999999999999999999999999999999999998999999999999999999999998885 5999999998775
Q ss_pred cC
Q 039503 93 LG 94 (259)
Q Consensus 93 ~~ 94 (259)
..
T Consensus 107 ~~ 108 (216)
T 2qfj_A 107 NI 108 (216)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 164
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=123.66 Aligned_cols=77 Identities=19% Similarity=0.259 Sum_probs=67.6
Q ss_pred CCCCccEEEE--cCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-C-----C
Q 039503 11 GDTTFTKVFV--GGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-I-----D 82 (259)
Q Consensus 11 ~~~~~~~lfV--gnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i-----~ 82 (259)
.+...++||| +||+++++|++|+++|++||+|++|.|+. .||||||+|.+.++|++|++.||+. | .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3445788999 77999999999999999999999998864 2789999999999999999999954 6 6
Q ss_pred CceEEEEEccc
Q 039503 83 GRRANCNIASL 93 (259)
Q Consensus 83 G~~l~V~~a~~ 93 (259)
|+.|.|.+++.
T Consensus 95 g~~l~v~~a~~ 105 (114)
T 2cq2_A 95 KITLYLNFVEK 105 (114)
T ss_dssp EEECEEEEESC
T ss_pred CcEEEEEeccc
Confidence 88999999864
No 165
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=1.2e-16 Score=135.78 Aligned_cols=80 Identities=28% Similarity=0.498 Sum_probs=73.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEcc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIAS 92 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~ 92 (259)
..++|||+||++++++++|+++|++||.|++|+|++|+ +.++|||||+|.+.++|++||+.||+ .|+|++|+|++++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999985 45799999999999999999999995 5999999999997
Q ss_pred cCC
Q 039503 93 LGR 95 (259)
Q Consensus 93 ~~~ 95 (259)
.++
T Consensus 180 ~~~ 182 (213)
T 4f02_A 180 SRK 182 (213)
T ss_dssp CHH
T ss_pred CCc
Confidence 643
No 166
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.67 E-value=1.1e-16 Score=129.46 Aligned_cols=79 Identities=32% Similarity=0.737 Sum_probs=73.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEEEccc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCNIASL 93 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~~a~~ 93 (259)
..++|||+||++++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.+ ..|+|+.|.|.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~-~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQ-HILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSC-CEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcc-cccCCeEcccccccc
Confidence 4789999999999999999999999999999999999999999999999999999999999963 468999999887754
No 167
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.67 E-value=2.6e-16 Score=132.61 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=74.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEEEccc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCNIASL 93 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~~a~~ 93 (259)
..++|||+||++++++++|+++|++||.|.+|+|+++. +++++|||||+|.+.++|++||+.++..|+|+.|.|.+++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 45899999999999999999999999999999999986 48899999999999999999999988889999999998765
Q ss_pred C
Q 039503 94 G 94 (259)
Q Consensus 94 ~ 94 (259)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 168
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.66 E-value=2.4e-16 Score=124.90 Aligned_cols=78 Identities=17% Similarity=0.360 Sum_probs=69.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccE-EEEEeCCHHHHHHHHhCCCCC-CCC--ceEEE
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGY-GFVTFRDPESARRACDNPNPV-IDG--RRANC 88 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~-aFV~F~~~~~A~~Al~~~~~~-i~G--~~l~V 88 (259)
...-+|||+||++.+||++|+++|++||+|++|+|+.+ .+|| |||+|.+.++|++|++.||+. |.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 45678999999999999999999999999999988764 3678 999999999999999999964 877 89999
Q ss_pred EEcccCC
Q 039503 89 NIASLGR 95 (259)
Q Consensus 89 ~~a~~~~ 95 (259)
++++..+
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9998764
No 169
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=3.9e-16 Score=126.20 Aligned_cols=80 Identities=25% Similarity=0.479 Sum_probs=74.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCC--ceEEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDG--RRANC 88 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G--~~l~V 88 (259)
....++|||+||+.++++++|+++|++||.|++++|++++.+++++|||||+|.+.++|++|++.+++ .|+| ++|+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 44578999999999999999999999999999999999998999999999999999999999999995 5877 99999
Q ss_pred EEc
Q 039503 89 NIA 91 (259)
Q Consensus 89 ~~a 91 (259)
++|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 170
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=5.2e-16 Score=122.11 Aligned_cols=76 Identities=16% Similarity=0.153 Sum_probs=66.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccE-EEEEeCCHHHHHHHHhCCCC-CCCC--ceEEEE
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGY-GFVTFRDPESARRACDNPNP-VIDG--RRANCN 89 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~-aFV~F~~~~~A~~Al~~~~~-~i~G--~~l~V~ 89 (259)
....|||+||++.+++++|+++|++||+|++|+|+.. .|| |||+|.+.++|++|++.||+ .|.| +.|+|+
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 4456889999999999999999999999999998652 386 99999999999999999995 5877 689999
Q ss_pred EcccCC
Q 039503 90 IASLGR 95 (259)
Q Consensus 90 ~a~~~~ 95 (259)
+|+...
T Consensus 98 ~Ak~~~ 103 (124)
T 2e5i_A 98 YARPTR 103 (124)
T ss_dssp CCSCSC
T ss_pred EecCCc
Confidence 998654
No 171
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.66 E-value=2.7e-16 Score=114.61 Aligned_cols=71 Identities=21% Similarity=0.458 Sum_probs=64.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhC----C-------CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-C
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQF----G-------DILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-V 80 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~ 80 (259)
...++|||+||++++++++|+++|++| | .|.++++.++ +|||||+|.+.++|++|| .+|+ .
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457899999999999999999999999 8 9999998754 799999999999999999 8885 5
Q ss_pred CCCceEEEEE
Q 039503 81 IDGRRANCNI 90 (259)
Q Consensus 81 i~G~~l~V~~ 90 (259)
|+|++|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999873
No 172
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.2e-16 Score=126.10 Aligned_cols=79 Identities=27% Similarity=0.392 Sum_probs=72.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEcccC
Q 039503 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIASLG 94 (259)
Q Consensus 16 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~~~ 94 (259)
++|||+||+.++++++|+++|++||.|.+|+|++++. ++++|||||+|.+.++|++|++.+++ .|.|+.|.|+++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999874 77899999999999999999999885 599999999998754
Q ss_pred C
Q 039503 95 R 95 (259)
Q Consensus 95 ~ 95 (259)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 173
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.65 E-value=2.8e-16 Score=122.90 Aligned_cols=77 Identities=23% Similarity=0.332 Sum_probs=68.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNI 90 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~ 90 (259)
....++|||+|| ++++++|+++|++||.|++|+|. +++|||||+|.+.++|++||+.+++ .|+|++|+|++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346789999996 79999999999999999999985 4689999999999999999999985 59999999999
Q ss_pred cccCCC
Q 039503 91 ASLGRP 96 (259)
Q Consensus 91 a~~~~~ 96 (259)
++....
T Consensus 108 a~~~~~ 113 (121)
T 2bz2_A 108 ARKQPM 113 (121)
T ss_dssp CCSSCC
T ss_pred eCCCCC
Confidence 986543
No 174
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=5.1e-16 Score=126.15 Aligned_cols=82 Identities=26% Similarity=0.393 Sum_probs=72.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCC--CcccEEEEEeCCHHHHHHHHhCCCC-CCC---CceEE
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTG--KSKGYGFVTFRDPESARRACDNPNP-VID---GRRAN 87 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg--~~kG~aFV~F~~~~~A~~Al~~~~~-~i~---G~~l~ 87 (259)
+.++|||+||++++++++|+++|++||.|++|+|++++.++ +++|||||+|.+.++|++||+.+++ .+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999998877 8999999999999999999999885 343 57778
Q ss_pred EEEcccCC
Q 039503 88 CNIASLGR 95 (259)
Q Consensus 88 V~~a~~~~ 95 (259)
|..+....
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88776543
No 175
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.64 E-value=5.4e-16 Score=124.85 Aligned_cols=80 Identities=28% Similarity=0.459 Sum_probs=73.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCce--EEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRR--ANC 88 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~--l~V 88 (259)
....++|||+||+.++++++|+++|++||.|++++|+.++.+++++|||||+|.+.++|++|++.+|+ .|+|+. |.|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 34568899999999999999999999999999999999998999999999999999999999999995 598865 777
Q ss_pred EEc
Q 039503 89 NIA 91 (259)
Q Consensus 89 ~~a 91 (259)
++|
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 765
No 176
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.64 E-value=3.2e-16 Score=133.13 Aligned_cols=77 Identities=17% Similarity=0.243 Sum_probs=70.5
Q ss_pred CccEEEEcCCC-CCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEc
Q 039503 14 TFTKVFVGGLA-WETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIA 91 (259)
Q Consensus 14 ~~~~lfVgnLp-~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a 91 (259)
..++|||+||+ +++++++|+++|++||.|++|+|+++ ++|||||+|.+.++|++||+.||+ .|.|+.|+|+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46899999999 89999999999999999999999875 379999999999999999999996 599999999999
Q ss_pred ccCC
Q 039503 92 SLGR 95 (259)
Q Consensus 92 ~~~~ 95 (259)
+...
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7543
No 177
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.63 E-value=1e-15 Score=134.61 Aligned_cols=82 Identities=21% Similarity=0.341 Sum_probs=73.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHH----HHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCce
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMR----RYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRR 85 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~ 85 (259)
+....++|||+||++++++++|+ ++|++||.|++|+|++ +++++|||||+|.+.++|++||+.+|+ .|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34568999999999999999977 8999999999999876 578999999999999999999999995 599999
Q ss_pred EEEEEcccCC
Q 039503 86 ANCNIASLGR 95 (259)
Q Consensus 86 l~V~~a~~~~ 95 (259)
|+|++++...
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999997644
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.63 E-value=1e-15 Score=124.37 Aligned_cols=79 Identities=25% Similarity=0.371 Sum_probs=71.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCC---CceEEE
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VID---GRRANC 88 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~---G~~l~V 88 (259)
...++|||+||+.++++++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++||+.+|+ .+. +++|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 367899999999999999999999999999999999986 589999999999999999999999995 444 499999
Q ss_pred EEcc
Q 039503 89 NIAS 92 (259)
Q Consensus 89 ~~a~ 92 (259)
++|.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9873
No 179
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=113.73 Aligned_cols=73 Identities=22% Similarity=0.299 Sum_probs=64.3
Q ss_pred ccE-EEEcCCCCCCCHHH----HHHHHhhC-CCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEE
Q 039503 15 FTK-VFVGGLAWETPTEE----MRRYFEQF-GDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRAN 87 (259)
Q Consensus 15 ~~~-lfVgnLp~~~te~~----L~~~F~~~-G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~ 87 (259)
+.+ |||+||++++++++ |+++|++| |+|.+| ++ |+|||+|.+.++|++|++.|++ .|.||.|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 455 99999999999998 55899999 599998 23 9999999999999999999996 59999999
Q ss_pred EEEcccCCCC
Q 039503 88 CNIASLGRPR 97 (259)
Q Consensus 88 V~~a~~~~~~ 97 (259)
|++|+.++.-
T Consensus 78 v~~A~~~sd~ 87 (96)
T 2diu_A 78 VSFTPKNREL 87 (96)
T ss_dssp EESSCCSCCC
T ss_pred EEecCCCcce
Confidence 9999876553
No 180
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.61 E-value=1.9e-15 Score=115.42 Aligned_cols=82 Identities=21% Similarity=0.222 Sum_probs=71.4
Q ss_pred CCCccEEEEcCCCC-----CCCHHHHHHHHhhCCCEEEEEEeecCCC-CCcccEEEEEeCCHHHHHHHHhCCCC-CCCCc
Q 039503 12 DTTFTKVFVGGLAW-----ETPTEEMRRYFEQFGDILEAVIISDKNT-GKSKGYGFVTFRDPESARRACDNPNP-VIDGR 84 (259)
Q Consensus 12 ~~~~~~lfVgnLp~-----~~te~~L~~~F~~~G~I~~v~i~~d~~t-g~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~ 84 (259)
....++|+|.||-. +.++++|+++|++||.|++|+|++++.+ ++++||+||+|.+.++|++|++.||+ .|+|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34578999999952 2378999999999999999999998654 68899999999999999999999996 59999
Q ss_pred eEEEEEccc
Q 039503 85 RANCNIASL 93 (259)
Q Consensus 85 ~l~V~~a~~ 93 (259)
.|.|+++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 181
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.60 E-value=8.6e-16 Score=133.66 Aligned_cols=78 Identities=23% Similarity=0.323 Sum_probs=69.0
Q ss_pred CCCccEEEEcCCCCCC---------CHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CC
Q 039503 12 DTTFTKVFVGGLAWET---------PTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VI 81 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~---------te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i 81 (259)
+..+++|||+||+.++ +|++|+++|++||+|++|+|+. +||||||+|.+.++|++|++.|++ .|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4568999999999998 7999999999999999999985 389999999999999999999995 47
Q ss_pred ------------CCceEEEEEcccCC
Q 039503 82 ------------DGRRANCNIASLGR 95 (259)
Q Consensus 82 ------------~G~~l~V~~a~~~~ 95 (259)
.|+.|.|++|+...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999998643
No 182
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.59 E-value=4.8e-15 Score=130.33 Aligned_cols=77 Identities=21% Similarity=0.255 Sum_probs=70.3
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCC-CceEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VID-GRRANC 88 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~-G~~l~V 88 (259)
.....++|||+||+.++++++|+++|++||.|++|+|+.++ +|||||+|.+.++|++||+.||+ .|+ |+.|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 34467899999999999999999999999999999998654 68999999999999999999996 588 999999
Q ss_pred EEcc
Q 039503 89 NIAS 92 (259)
Q Consensus 89 ~~a~ 92 (259)
++++
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9986
No 183
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.58 E-value=2.7e-15 Score=122.50 Aligned_cols=79 Identities=20% Similarity=0.351 Sum_probs=70.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
.+...++|||+||+.++++++|+++|++||+|..+ ..+++++|||||+|.+.++|++||+.|++ .|+|+.|.|+
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 169 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 169 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEE
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567899999999999999999999999988766 45788999999999999999999999995 6999999999
Q ss_pred EcccC
Q 039503 90 IASLG 94 (259)
Q Consensus 90 ~a~~~ 94 (259)
+++.+
T Consensus 170 ~a~~k 174 (175)
T 1fje_B 170 YTGEK 174 (175)
T ss_dssp ECSSC
T ss_pred ecCCC
Confidence 99753
No 184
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.58 E-value=5.6e-15 Score=126.81 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=72.0
Q ss_pred CCCccEEEEcCCCC-CCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 12 DTTFTKVFVGGLAW-ETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 12 ~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
....++|||+||++ ++++++|+++|++||.|++|+|++++ +|||||+|.+.++|++||+.+++ .|.|+.|.|+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34678999999999 99999999999999999999999875 78999999999999999998885 5999999999
Q ss_pred EcccCC
Q 039503 90 IASLGR 95 (259)
Q Consensus 90 ~a~~~~ 95 (259)
+++...
T Consensus 106 ~a~~~~ 111 (229)
T 2adc_A 106 LSKHQN 111 (229)
T ss_dssp CCSCCC
T ss_pred EecCcc
Confidence 997653
No 185
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.57 E-value=9e-15 Score=128.70 Aligned_cols=82 Identities=23% Similarity=0.368 Sum_probs=76.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEcc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIAS 92 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~ 92 (259)
..++|||+||++++++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++|++.+++ .|+|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 467999999999999999999999999999999999999999999999999999999999999885 5999999999997
Q ss_pred cCC
Q 039503 93 LGR 95 (259)
Q Consensus 93 ~~~ 95 (259)
...
T Consensus 174 ~~~ 176 (284)
T 3smz_A 174 AGQ 176 (284)
T ss_dssp GGG
T ss_pred CCC
Confidence 654
No 186
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.57 E-value=4.4e-15 Score=131.19 Aligned_cols=82 Identities=22% Similarity=0.323 Sum_probs=74.0
Q ss_pred CCCccEEEEcCCCCC-CCHHHHHHHHhhCCCEEEEEEeecCC-CCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEE
Q 039503 12 DTTFTKVFVGGLAWE-TPTEEMRRYFEQFGDILEAVIISDKN-TGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~-tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V 88 (259)
....++|||+||+.+ +++++|+++|++||.|++|+|+.+.. |++++|||||+|.+.++|++|| .+|+ .|+|++|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 345789999999999 99999999999999999999999876 6999999999999999999999 8885 599999999
Q ss_pred EEcccC
Q 039503 89 NIASLG 94 (259)
Q Consensus 89 ~~a~~~ 94 (259)
.+++.+
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999754
No 187
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.2e-14 Score=110.14 Aligned_cols=83 Identities=20% Similarity=0.267 Sum_probs=69.4
Q ss_pred CCCCCCccEEEEcCCCCCCC-----------HHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCC
Q 039503 9 QFGDTTFTKVFVGGLAWETP-----------TEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP 77 (259)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~t-----------e~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~ 77 (259)
.......++|+|.||-.... +++|+++|++||.|++|.| .++ .++|||||+|.+.++|++||+.|
T Consensus 9 ~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 9 PSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp CCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHS
T ss_pred CCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHc
Confidence 34556788999999944332 5899999999999999965 554 37999999999999999999999
Q ss_pred CC-CCCCceEEEEEcccCC
Q 039503 78 NP-VIDGRRANCNIASLGR 95 (259)
Q Consensus 78 ~~-~i~G~~l~V~~a~~~~ 95 (259)
|+ .|+|+.|+|+++....
T Consensus 85 ng~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 85 DGRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp TTCEETTEECEEEECCSCC
T ss_pred CCCEECCcEEEEEEeCCCC
Confidence 95 5999999999997653
No 188
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.55 E-value=1.3e-15 Score=124.44 Aligned_cols=84 Identities=18% Similarity=0.266 Sum_probs=72.2
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEE
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANC 88 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V 88 (259)
......++|||+||+.++++++|+++|++||.|.. .++.+..+++++|||||+|.+.++|++||+ +++ .|.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 35567899999999999999999999999998766 344555678899999999999999999996 774 599999999
Q ss_pred EEcccCC
Q 039503 89 NIASLGR 95 (259)
Q Consensus 89 ~~a~~~~ 95 (259)
.++....
T Consensus 86 ~~~~~~~ 92 (175)
T 1fje_B 86 EKPKGRD 92 (175)
T ss_dssp ECCCCSS
T ss_pred ecCCCcc
Confidence 9987643
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.55 E-value=6.1e-15 Score=129.78 Aligned_cols=84 Identities=14% Similarity=0.196 Sum_probs=76.8
Q ss_pred CCCccEEEEcCCCCCC-CHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEE
Q 039503 12 DTTFTKVFVGGLAWET-PTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCN 89 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~-te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~ 89 (259)
....++|||+||++++ ++++|+++|++||.|++|+|+.+. +|+++|||||+|.+.++|++||+.+++ .|+|+.|.|+
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 3467899999999995 999999999999999999999987 689999999999999999999999995 5999999999
Q ss_pred EcccCCC
Q 039503 90 IASLGRP 96 (259)
Q Consensus 90 ~a~~~~~ 96 (259)
+++.+..
T Consensus 260 ~a~~~~~ 266 (284)
T 3smz_A 260 FCAPGPP 266 (284)
T ss_dssp ECCSSSC
T ss_pred EecCCCc
Confidence 9987654
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.55 E-value=6.5e-15 Score=122.81 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=70.5
Q ss_pred CccEEEEcCCCC-CCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEc
Q 039503 14 TFTKVFVGGLAW-ETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIA 91 (259)
Q Consensus 14 ~~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a 91 (259)
..++|||+||+. ++++++|+++|++||.|++|+|++++ +|||||+|.+.++|++||+.+++ .|.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 368999999999 99999999999999999999998774 78999999999999999998885 599999999998
Q ss_pred ccCC
Q 039503 92 SLGR 95 (259)
Q Consensus 92 ~~~~ 95 (259)
+...
T Consensus 77 ~~~~ 80 (198)
T 1qm9_A 77 KHQN 80 (198)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 7653
No 191
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=9.4e-14 Score=105.16 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=65.4
Q ss_pred CCCccEEEEcCCC-------CCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCc
Q 039503 12 DTTFTKVFVGGLA-------WETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGR 84 (259)
Q Consensus 12 ~~~~~~lfVgnLp-------~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~ 84 (259)
+....+|-|.-.. .+++|++|+++|++||+|++|+|+ ++++|||||+|++.++|++||+.+++ +.++
T Consensus 7 ~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~-~~g~ 80 (100)
T 2d9o_A 7 GQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG-LVDN 80 (100)
T ss_dssp CCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB-CSSS
T ss_pred CCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC-CCCC
Confidence 3346677776443 458999999999999999999997 35799999999999999999999554 6799
Q ss_pred eEEEEEcccCCC
Q 039503 85 RANCNIASLGRP 96 (259)
Q Consensus 85 ~l~V~~a~~~~~ 96 (259)
.|+|++++....
T Consensus 81 ~l~V~~a~~~~~ 92 (100)
T 2d9o_A 81 PLKISWLEGQPQ 92 (100)
T ss_dssp BCEEECSSCCCC
T ss_pred eEEEEEccCCCC
Confidence 999999876543
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.52 E-value=1.8e-14 Score=126.04 Aligned_cols=81 Identities=25% Similarity=0.319 Sum_probs=73.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CC-CC---CceEEE
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PV-ID---GRRANC 88 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~-i~---G~~l~V 88 (259)
..++|||+||+.++++++|+++|++||.|++|+|+.| .+|+++|||||+|.+.++|.+||+.++ +. +. ++.|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4679999999999999999999999999999999999 589999999999999999999999995 44 33 899999
Q ss_pred EEcccCC
Q 039503 89 NIASLGR 95 (259)
Q Consensus 89 ~~a~~~~ 95 (259)
+++....
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9987654
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.51 E-value=3.2e-14 Score=124.49 Aligned_cols=76 Identities=26% Similarity=0.479 Sum_probs=69.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEE
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNI 90 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~ 90 (259)
....++|||+||+.++|+++|+++|++||.|.+|+|.++ +|||||+|.+.++|++||+.+++ .|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 345789999999999999999999999999999999653 79999999999999999999885 59999999999
Q ss_pred ccc
Q 039503 91 ASL 93 (259)
Q Consensus 91 a~~ 93 (259)
+..
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 864
No 194
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.50 E-value=1.7e-14 Score=122.51 Aligned_cols=76 Identities=11% Similarity=0.108 Sum_probs=66.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCE--EEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCc----eE
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDI--LEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGR----RA 86 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I--~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~----~l 86 (259)
..++|||+||+++++|++|+++|++||.| ++|+|+.++ ++.+|||||+|.+.++|++||+.||+ .|.|+ .+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 35689999999999999999999999999 899998775 55679999999999999999999996 47775 56
Q ss_pred EEEEc
Q 039503 87 NCNIA 91 (259)
Q Consensus 87 ~V~~a 91 (259)
.|++|
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 77665
No 195
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.50 E-value=3.4e-14 Score=108.36 Aligned_cols=82 Identities=13% Similarity=0.082 Sum_probs=69.4
Q ss_pred CCCccEEEEcCC--CCCCC--------HHHHHHHHhhCCCEEEEEEeecCCC--CCcccEEEEEeCCHHHHHHHHhCCCC
Q 039503 12 DTTFTKVFVGGL--AWETP--------TEEMRRYFEQFGDILEAVIISDKNT--GKSKGYGFVTFRDPESARRACDNPNP 79 (259)
Q Consensus 12 ~~~~~~lfVgnL--p~~~t--------e~~L~~~F~~~G~I~~v~i~~d~~t--g~~kG~aFV~F~~~~~A~~Al~~~~~ 79 (259)
....+.|.|.|+ +.++. +++|+++|++||.|++|+|++++.+ ++++||+||+|.+.++|++|++.||+
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 356788999998 33333 3689999999999999999988754 36799999999999999999999996
Q ss_pred -CCCCceEEEEEccc
Q 039503 80 -VIDGRRANCNIASL 93 (259)
Q Consensus 80 -~i~G~~l~V~~a~~ 93 (259)
.|+||.|.|++...
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 59999999998754
No 196
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.50 E-value=8.1e-14 Score=112.99 Aligned_cols=74 Identities=19% Similarity=0.390 Sum_probs=65.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhC----C-------CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CC
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQF----G-------DILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VI 81 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i 81 (259)
..++|||+||+.++++++|+++|++| | .|.++++.+ ++|||||+|.+.++|++|| .+++ .|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 777777753 4899999999999999999 7775 59
Q ss_pred CCceEEEEEcccC
Q 039503 82 DGRRANCNIASLG 94 (259)
Q Consensus 82 ~G~~l~V~~a~~~ 94 (259)
.|+.|.|+++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987654
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.49 E-value=5.5e-14 Score=120.55 Aligned_cols=75 Identities=8% Similarity=0.131 Sum_probs=68.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCC-CceEEEEE
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFG-DILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VID-GRRANCNI 90 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~-G~~l~V~~ 90 (259)
..++|||+||+.++++++|+++|++|| .|++|+|+.+ .+|||||+|.+.++|++||+.|++ .|+ |++|+|++
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 368999999999999999999999999 9999999753 378999999999999999999995 588 99999999
Q ss_pred ccc
Q 039503 91 ASL 93 (259)
Q Consensus 91 a~~ 93 (259)
++.
T Consensus 225 a~~ 227 (229)
T 2adc_A 225 SKS 227 (229)
T ss_dssp CSS
T ss_pred ecC
Confidence 875
No 198
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.49 E-value=3.3e-14 Score=118.50 Aligned_cols=75 Identities=8% Similarity=0.131 Sum_probs=68.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCC-CceEEEEE
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFG-DILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VID-GRRANCNI 90 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~-G~~l~V~~ 90 (259)
..++|||+||+.++++++|+++|++|| .|++|+|+.+ .+|+|||+|.+.++|++||+.+++ .|+ |++|+|++
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 378999999999999999999999999 9999999764 379999999999999999999995 588 99999999
Q ss_pred ccc
Q 039503 91 ASL 93 (259)
Q Consensus 91 a~~ 93 (259)
++.
T Consensus 194 a~~ 196 (198)
T 1qm9_A 194 SKS 196 (198)
T ss_dssp ECC
T ss_pred ecc
Confidence 874
No 199
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.49 E-value=6.8e-14 Score=115.98 Aligned_cols=75 Identities=19% Similarity=0.403 Sum_probs=64.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhC----C-------CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CC
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQF----G-------DILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VI 81 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i 81 (259)
..++|||+||++++++++|+++|++| | .|.++++ ++++|||||+|.+.++|++|| .+++ .|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 5 5666665 345899999999999999999 7775 59
Q ss_pred CCceEEEEEcccCC
Q 039503 82 DGRRANCNIASLGR 95 (259)
Q Consensus 82 ~G~~l~V~~a~~~~ 95 (259)
+|+.|+|++++...
T Consensus 76 ~g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQ 89 (198)
T ss_dssp TTEEEEEECCCCCC
T ss_pred cCceEEEeCCCCCC
Confidence 99999999887543
No 200
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.48 E-value=8.4e-15 Score=111.55 Aligned_cols=71 Identities=23% Similarity=0.397 Sum_probs=61.8
Q ss_pred EcCCCCCCCHHHHHHHH------------hhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceE
Q 039503 20 VGGLAWETPTEEMRRYF------------EQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRA 86 (259)
Q Consensus 20 VgnLp~~~te~~L~~~F------------~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l 86 (259)
+.+|++++++++|+++| ++||.|++|+|++++. ++++|||||+|.+.++|++|++.||+ .|+|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56677777887777666 9999999999998864 78899999999999999999999996 5999999
Q ss_pred EEEEc
Q 039503 87 NCNIA 91 (259)
Q Consensus 87 ~V~~a 91 (259)
+|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 201
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.48 E-value=4.3e-14 Score=124.81 Aligned_cols=81 Identities=14% Similarity=0.194 Sum_probs=68.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFG-DILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIA 91 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a 91 (259)
..++|||+||+.++++++|+++|++|| .|.+|+|+.++. ++++|||||+|.+.++|++||+.+++ .|+|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 478999999999999999999999999 999999998875 78899999999999999999999885 599999999998
Q ss_pred ccCC
Q 039503 92 SLGR 95 (259)
Q Consensus 92 ~~~~ 95 (259)
....
T Consensus 195 ~~~~ 198 (292)
T 2ghp_A 195 NPLE 198 (292)
T ss_dssp CCC-
T ss_pred CCCc
Confidence 7654
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.45 E-value=1.2e-13 Score=107.53 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=68.6
Q ss_pred CccEEEEcCCCC--C---CCHHHHHHHHhhCCCEEEEEEeecCC----CCCcccEEEEEeCCHHHHHHHHhCCCC-CCCC
Q 039503 14 TFTKVFVGGLAW--E---TPTEEMRRYFEQFGDILEAVIISDKN----TGKSKGYGFVTFRDPESARRACDNPNP-VIDG 83 (259)
Q Consensus 14 ~~~~lfVgnLp~--~---~te~~L~~~F~~~G~I~~v~i~~d~~----tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G 83 (259)
..+.|+|.||-. + --++||++.|++||.|++|+|++++. +++++||+||+|.+.++|++|++.||+ .|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 467899999831 2 23689999999999999999998864 457789999999999999999999996 5999
Q ss_pred ceEEEEEccc
Q 039503 84 RRANCNIASL 93 (259)
Q Consensus 84 ~~l~V~~a~~ 93 (259)
+.|.|+++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998753
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.38 E-value=8.5e-13 Score=120.42 Aligned_cols=77 Identities=18% Similarity=0.234 Sum_probs=64.4
Q ss_pred CCCCCccEEEEcC--CCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-C---CC
Q 039503 10 FGDTTFTKVFVGG--LAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-I---DG 83 (259)
Q Consensus 10 ~~~~~~~~lfVgn--Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i---~G 83 (259)
..+...++|||+| |++++||++|+++|++||+|++|.|.. +||||||+|++.++|++||+.||+. + .|
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 4456788999999 578999999999999999999987753 4799999999999999999999963 3 34
Q ss_pred c--eEEEEEcc
Q 039503 84 R--RANCNIAS 92 (259)
Q Consensus 84 ~--~l~V~~a~ 92 (259)
+ .|.|+++.
T Consensus 87 ~~~~ly~~~~~ 97 (345)
T 3tht_A 87 QKITLYLNFVE 97 (345)
T ss_dssp CEEECEEEECS
T ss_pred CceEEEEEEee
Confidence 5 56777763
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.25 E-value=9.6e-12 Score=96.21 Aligned_cols=76 Identities=9% Similarity=0.121 Sum_probs=62.5
Q ss_pred CccEEEEcCCCCCC----------CHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCC
Q 039503 14 TFTKVFVGGLAWET----------PTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VID 82 (259)
Q Consensus 14 ~~~~lfVgnLp~~~----------te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~ 82 (259)
..+.|.|.|+=... -++||+++|++||.|++|.|.++. .+||+||+|.+.++|++|++.||+ .|+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 45678888873211 235789999999999999987653 489999999999999999999996 599
Q ss_pred CceEEEEEccc
Q 039503 83 GRRANCNIASL 93 (259)
Q Consensus 83 G~~l~V~~a~~ 93 (259)
|+.|.|+++..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999853
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=2e-11 Score=95.29 Aligned_cols=81 Identities=12% Similarity=0.197 Sum_probs=70.0
Q ss_pred CCCCCCCCCccEEEEcCCCCC-CCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCC-HHHHHHHHhCCC--C-C
Q 039503 6 YRSQFGDTTFTKVFVGGLAWE-TPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRD-PESARRACDNPN--P-V 80 (259)
Q Consensus 6 ~~~~~~~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~-~~~A~~Al~~~~--~-~ 80 (259)
+...+.-...+.|||+||+++ +++++|+++|++||+|..|+++++.. .|||+|.+ .++|++||+.++ + +
T Consensus 9 ~~~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~ 82 (121)
T 1owx_A 9 HHGSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQ 82 (121)
T ss_dssp CCCCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBC
T ss_pred ccCcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcE
Confidence 344566677899999999999 99999999999999999999988754 59999999 899999999986 3 4
Q ss_pred CCCceEEEEEcc
Q 039503 81 IDGRRANCNIAS 92 (259)
Q Consensus 81 i~G~~l~V~~a~ 92 (259)
|+|..+.+++..
T Consensus 83 i~g~~~~~evL~ 94 (121)
T 1owx_A 83 LRNKEVTWEVLE 94 (121)
T ss_dssp TTSSSEEEEECC
T ss_pred EeCcEEEEEECC
Confidence 999999887653
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=1.4e-10 Score=85.62 Aligned_cols=71 Identities=23% Similarity=0.242 Sum_probs=58.6
Q ss_pred ccEEEEcCCC----CCC-CH---HHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCce
Q 039503 15 FTKVFVGGLA----WET-PT---EEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRR 85 (259)
Q Consensus 15 ~~~lfVgnLp----~~~-te---~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~ 85 (259)
.-+|+|..++ .++ ++ .+|.+.|++||+|..++|+.|+ +||+|.+.++|.+||+ ||+ .|+||.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 4567777655 223 32 5689999999999999999874 8999999999999999 886 599999
Q ss_pred EEEEEcccC
Q 039503 86 ANCNIASLG 94 (259)
Q Consensus 86 l~V~~a~~~ 94 (259)
|+|+++++.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999999764
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.93 E-value=1.7e-09 Score=92.02 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHhhCCCEEEEEEeecC----CCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEEEEEccc
Q 039503 26 ETPTEEMRRYFEQFGDILEAVIISDK----NTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRANCNIASL 93 (259)
Q Consensus 26 ~~te~~L~~~F~~~G~I~~v~i~~d~----~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~V~~a~~ 93 (259)
+-.+++|++.|++||+|++|+|+++. .+++++|++||+|.+.++|++||+.||+ .++||.|.|++...
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 34567899999999999999998554 4558999999999999999999999996 59999999998753
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=1.1e-09 Score=81.28 Aligned_cols=71 Identities=24% Similarity=0.230 Sum_probs=59.1
Q ss_pred CccEEEEcCCCCC------CCH---HHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCC
Q 039503 14 TFTKVFVGGLAWE------TPT---EEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDG 83 (259)
Q Consensus 14 ~~~~lfVgnLp~~------~te---~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G 83 (259)
..-+|+|..++.+ ..+ .+|.+.|++||+|..++|+.|+ +||+|.+.++|.+||+ ||+ .|+|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 4568888877632 332 4588999999999999999874 9999999999999999 885 5999
Q ss_pred ceEEEEEccc
Q 039503 84 RRANCNIASL 93 (259)
Q Consensus 84 ~~l~V~~a~~ 93 (259)
|.|+|++...
T Consensus 85 r~L~V~~k~~ 94 (95)
T 1ufw_A 85 RAVKISGPSS 94 (95)
T ss_dssp EEEEEECCCC
T ss_pred eEEEEeccCC
Confidence 9999998653
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.39 E-value=7e-07 Score=67.77 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=63.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhC-----CCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC-CCCCceEE
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQF-----GDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP-VIDGRRAN 87 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~-----G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~-~i~G~~l~ 87 (259)
..++|-|=||++.++++.|+.+++.+ |.|++|.+..| .+-|+|+|.|...|-||.-.+++ +|.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 36778888999999999999999999 99999999877 45799999999999999999996 59999999
Q ss_pred EEE
Q 039503 88 CNI 90 (259)
Q Consensus 88 V~~ 90 (259)
|--
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 853
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=2.3e-05 Score=58.79 Aligned_cols=76 Identities=28% Similarity=0.365 Sum_probs=63.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhC-----CCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCce
Q 039503 11 GDTTFTKVFVGGLAWETPTEEMRRYFEQF-----GDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRR 85 (259)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~-----G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~ 85 (259)
+..-.++|.|.||+.+++++.|+-+|++- |+|++++... +-|+|+|.+.+.|++.|+...+.|++..
T Consensus 4 ~~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~ 75 (104)
T 2dhx_A 4 GSSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQ 75 (104)
T ss_dssp SCCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSB
T ss_pred CccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeE
Confidence 34557899999999999999999999872 5788887753 4689999999999999999889999999
Q ss_pred EEEEEcccC
Q 039503 86 ANCNIASLG 94 (259)
Q Consensus 86 l~V~~a~~~ 94 (259)
|.|.-....
T Consensus 76 LsV~P~~~~ 84 (104)
T 2dhx_A 76 LSLRPAPPR 84 (104)
T ss_dssp CEEEECCCC
T ss_pred EEEEcCCCC
Confidence 999754433
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.65 E-value=0.00011 Score=55.31 Aligned_cols=75 Identities=11% Similarity=0.043 Sum_probs=61.9
Q ss_pred CCccEEEEcCCCCCC-C----HHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC-CCCceE
Q 039503 13 TTFTKVFVGGLAWET-P----TEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV-IDGRRA 86 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~-t----e~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~-i~G~~l 86 (259)
.-.++|+|.||+.++ . .+.++++|..|+++.....++.- .-..|.|.+.++|.+|-..|++. |.|++|
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 346789999998765 2 25678999999999888877652 24689999999999999999975 999999
Q ss_pred EEEEccc
Q 039503 87 NCNIASL 93 (259)
Q Consensus 87 ~V~~a~~ 93 (259)
+|-++..
T Consensus 77 r~YFgq~ 83 (104)
T 1wey_A 77 KLYFAQT 83 (104)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999873
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.43 E-value=0.00039 Score=51.60 Aligned_cols=56 Identities=23% Similarity=0.364 Sum_probs=47.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCC
Q 039503 13 TTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP 77 (259)
Q Consensus 13 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~ 77 (259)
...+.++| ++|.++...||.++|+.|| -..|+++.|. -|||.|.+++.|..|+..+
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 34566777 9999999999999999999 4567788764 6999999999999998865
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.24 E-value=0.0016 Score=47.79 Aligned_cols=77 Identities=14% Similarity=0.137 Sum_probs=58.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCC--cccEEEEEeCCHHHHHHHHhCCCCC--CCC----ceEE
Q 039503 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGK--SKGYGFVTFRDPESARRACDNPNPV--IDG----RRAN 87 (259)
Q Consensus 16 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~--~kG~aFV~F~~~~~A~~Al~~~~~~--i~G----~~l~ 87 (259)
+||.|++||..+||+++.+.++...++.-...+..+.+.+ .-.-|+|.|.+.+++....+..++. ++. .+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 6899999999999999999999988877766665544333 2266999999999999999988843 332 2335
Q ss_pred EEEcc
Q 039503 88 CNIAS 92 (259)
Q Consensus 88 V~~a~ 92 (259)
|++|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66664
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.18 E-value=0.00054 Score=50.96 Aligned_cols=53 Identities=25% Similarity=0.421 Sum_probs=45.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCC
Q 039503 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP 77 (259)
Q Consensus 16 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~ 77 (259)
+.++| ++|.++...||.++|+.|| -..|+++.|. -|||.|.+.+.|..|+..+
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 45566 9999999999999999999 5678888774 5999999999999999854
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.88 E-value=0.0055 Score=47.07 Aligned_cols=71 Identities=18% Similarity=0.234 Sum_probs=55.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCC-ceEEEEEc
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDG-RRANCNIA 91 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G-~~l~V~~a 91 (259)
..+-|.|-+.+.+. .+.|.++|++||+|++.... ....+-.|.|.++.+|++||.+....|++ ..|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 46778888998774 56677899999999998762 13578999999999999999996566764 56666654
No 216
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.34 E-value=0.0016 Score=61.24 Aligned_cols=58 Identities=19% Similarity=0.251 Sum_probs=44.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCC
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP 77 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~ 77 (259)
..++|||. ++.++++++|.++|++||.|.++..-.++ .-|+.|+|.+.+++.+++...
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhcc
Confidence 36889997 78999999999999999999998776543 479999999999999887664
No 217
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.95 E-value=0.01 Score=43.96 Aligned_cols=78 Identities=13% Similarity=0.090 Sum_probs=52.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCC-c-ccEEEEEeCCHHHHHHHHhCCCCC--CCC----ceE
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGK-S-KGYGFVTFRDPESARRACDNPNPV--IDG----RRA 86 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~-~-kG~aFV~F~~~~~A~~Al~~~~~~--i~G----~~l 86 (259)
.-||.|+.||..+||+++.+.++..-++.....+..+.+-+ + -.-|+|.|.+.+++....+..++. ++. -+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 45899999999999999887777655543222222222211 1 256899999999999999988853 332 234
Q ss_pred EEEEcc
Q 039503 87 NCNIAS 92 (259)
Q Consensus 87 ~V~~a~ 92 (259)
.|++|-
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 566664
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.64 E-value=0.012 Score=45.87 Aligned_cols=77 Identities=21% Similarity=0.326 Sum_probs=53.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCCCEEEE-EEeec--------CCCC-----CcccEEEEEeCCHHHHHHHHhCCCCC
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFGDILEA-VIISD--------KNTG-----KSKGYGFVTFRDPESARRACDNPNPV 80 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v-~i~~d--------~~tg-----~~kG~aFV~F~~~~~A~~Al~~~~~~ 80 (259)
...|.|-+.+.+. ...+.+.|++||.|++- .+.++ +.+. ...++-.|+|.+..+|.+||.+...+
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 3456677886554 45567789999998772 22110 0001 13567899999999999999998888
Q ss_pred CCCceEEEEEcc
Q 039503 81 IDGRRANCNIAS 92 (259)
Q Consensus 81 i~G~~l~V~~a~ 92 (259)
|+|..|-|....
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999888887653
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.53 E-value=0.0062 Score=48.03 Aligned_cols=33 Identities=15% Similarity=0.093 Sum_probs=27.9
Q ss_pred EEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC
Q 039503 44 EAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN 78 (259)
Q Consensus 44 ~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~ 78 (259)
.++|+++. .+++|||||+|.+.++|++|++.++
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~ 34 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYA 34 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhc
Confidence 46677775 3689999999999999999998876
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=93.60 E-value=0.029 Score=43.82 Aligned_cols=39 Identities=21% Similarity=0.145 Sum_probs=34.1
Q ss_pred CCcccEEEEEeCCHHHHHHHHhCC-C-CCCCCceEEEEEccc
Q 039503 54 GKSKGYGFVTFRDPESARRACDNP-N-PVIDGRRANCNIASL 93 (259)
Q Consensus 54 g~~kG~aFV~F~~~~~A~~Al~~~-~-~~i~G~~l~V~~a~~ 93 (259)
.+.+|+++|+|.+.++|++|++.+ | ..|+| .|.|.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 467899999999999999999999 7 46999 999987754
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.40 E-value=0.35 Score=45.86 Aligned_cols=56 Identities=23% Similarity=0.391 Sum_probs=45.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN 78 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~ 78 (259)
....++|+ ++..+...+|.++|+.||. .+|+++.| ..|||.|.+.+.|..+++.++
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 34566776 8888999999999999995 46666654 369999999999999988764
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=80.23 E-value=2.8 Score=28.57 Aligned_cols=67 Identities=13% Similarity=0.212 Sum_probs=39.5
Q ss_pred EEEEcC-CCCCCCHHHHHHHHhhCC-----CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCC-CCCCCceEEEE
Q 039503 17 KVFVGG-LAWETPTEEMRRYFEQFG-----DILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPN-PVIDGRRANCN 89 (259)
Q Consensus 17 ~lfVgn-Lp~~~te~~L~~~F~~~G-----~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~-~~i~G~~l~V~ 89 (259)
+|||.. --..++..+|..++..-+ +|-.|+|. ..|.||+... +.++++++.++ ..+.|+++.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 456642 234566677777776544 45566664 2478998865 45677778777 45999999998
Q ss_pred Ecc
Q 039503 90 IAS 92 (259)
Q Consensus 90 ~a~ 92 (259)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 223
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=58.76 E-value=19 Score=23.41 Aligned_cols=56 Identities=9% Similarity=0.040 Sum_probs=43.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCC
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP 77 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~ 77 (259)
..+|.|.++.-.--...|++.+.+ -.|..+.+... .+-+.|+|.+.++..++|+.+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHc
Confidence 457889999877788889999999 88888877543 345778887667777777765
No 224
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=51.87 E-value=42 Score=24.55 Aligned_cols=63 Identities=10% Similarity=0.112 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHH-hhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEEEccc
Q 039503 23 LAWETPTEEMRRYF-EQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCNIASL 93 (259)
Q Consensus 23 Lp~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~~a~~ 93 (259)
++.-++-+||.... +.||.-.++....+ -..|-..+.++.++||+.++....-+-|+|-+...
T Consensus 24 f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrss~~kSLrIlL~~~ 87 (103)
T 2cu1_A 24 FPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVIN 87 (103)
T ss_dssp EESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEEC
T ss_pred ccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccCCcccceEEEEecC
Confidence 46677777776544 67999888877522 27889999999999999998554444445544443
No 225
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=47.72 E-value=75 Score=22.83 Aligned_cols=56 Identities=14% Similarity=0.146 Sum_probs=45.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCC
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNP 77 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~ 77 (259)
.+|-|-|-|||..+-..++.-.....|---.|..+ -|-+.|.|.+.++..-||..+
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 47888888999999999988888888876667665 346999999999888888764
No 226
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=47.68 E-value=54 Score=23.10 Aligned_cols=48 Identities=10% Similarity=0.108 Sum_probs=33.7
Q ss_pred CCHHHHHHHHhh----CC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC
Q 039503 27 TPTEEMRRYFEQ----FG-DILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP 79 (259)
Q Consensus 27 ~te~~L~~~F~~----~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~ 79 (259)
-.|+.+++.+++ .+ +|.++.+.. ...||-||++...++...+|+.+.+
T Consensus 20 G~E~~V~~~L~~~~~~~~l~i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 20 GQEKNIAGLMASRAEKEQLDVYSILASE-----SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp TCHHHHHHHHHHHHHHTTCCEEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCC
Confidence 355555554442 23 366665543 2689999999999999999998875
No 227
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=47.48 E-value=41 Score=23.80 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=35.7
Q ss_pred EcCCCCCCCHHHHHHHHhh-CC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHh
Q 039503 20 VGGLAWETPTEEMRRYFEQ-FG-DILEAVIISDKNTGKSKGYGFVTFRDPESARRACD 75 (259)
Q Consensus 20 VgnLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~ 75 (259)
+-.++...+..+|++.+++ |+ .|.+|..+.-+ .+. --|+|++..-.+|.....
T Consensus 27 ~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~~--KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 27 TFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RGE--KKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TSC--EEEEEEECTTSCHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CCc--eEEEEEcCCCCcHHHHHH
Confidence 3346778999999999987 55 46677655433 122 349999987776665443
No 228
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=50.89 E-value=4.5 Score=29.95 Aligned_cols=55 Identities=9% Similarity=0.129 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHhhCCCEEEEEEeecCCCCCcc-cEEEEEeCCHHHHHHHHhCCCCCC
Q 039503 26 ETPTEEMRRYFEQFGDILEAVIISDKNTGKSK-GYGFVTFRDPESARRACDNPNPVI 81 (259)
Q Consensus 26 ~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~k-G~aFV~F~~~~~A~~Al~~~~~~i 81 (259)
..++++|+++..+.+ +..+.+.+....|+.. -.-+-.|.+.++|.+|++.|...|
T Consensus 33 ~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 33 SSNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 355677888888876 4556555433333321 122347899999999999987544
No 229
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=44.19 E-value=65 Score=21.09 Aligned_cols=62 Identities=10% Similarity=0.153 Sum_probs=44.6
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeC----CHHHHHHHHhCC
Q 039503 10 FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFR----DPESARRACDNP 77 (259)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~----~~~~A~~Al~~~ 77 (259)
+.+....+|.|.++.-..-...|++.+.+.-.|.++.+... .+-+.|+|. +.+...++|+.+
T Consensus 5 ~~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 5 QAGEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLD------NQEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp SSSCEEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECST------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred ccCceEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 33445567889999877777889999999888988887443 346788885 345666666655
No 230
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=43.52 E-value=96 Score=22.83 Aligned_cols=64 Identities=16% Similarity=0.175 Sum_probs=40.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHh-------hCCCEEEEEEeecCCC-CCccc--EEE-EEeCCHHHHHHHHh
Q 039503 12 DTTFTKVFVGGLAWETPTEEMRRYFE-------QFGDILEAVIISDKNT-GKSKG--YGF-VTFRDPESARRACD 75 (259)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~~L~~~F~-------~~G~I~~v~i~~d~~t-g~~kG--~aF-V~F~~~~~A~~Al~ 75 (259)
....+.|.+-.|..++++++++++.+ +.-.|+++.+-.+... +..++ ++| ++|++.++.+.-..
T Consensus 18 ~~mi~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~~ 92 (121)
T 3bb5_A 18 QGMLYHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYAV 92 (121)
T ss_dssp -CCEEEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHHH
T ss_pred CCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHHc
Confidence 33455566667888888876555443 3667888887766432 33343 443 58999888776544
No 231
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=38.09 E-value=4.5 Score=31.71 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=15.5
Q ss_pred HHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeC
Q 039503 30 EEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFR 65 (259)
Q Consensus 30 ~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~ 65 (259)
+|+.++|...|.|+ +..+ .|||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vk---wfn~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICK---WFNV-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEE---EEET-----TTTEEEEEEE
T ss_pred CcccccccceeEEE---EEEC-----CCCeeEEeeC
Confidence 45556666666544 3332 3899999875
No 232
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=35.31 E-value=64 Score=28.88 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=40.6
Q ss_pred EEEEcCCCCCC----CHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCc
Q 039503 17 KVFVGGLAWET----PTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGR 84 (259)
Q Consensus 17 ~lfVgnLp~~~----te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~ 84 (259)
--+||||..-. ....+.++..+||.|..+++. +.-+|...+.+.++.++......+.++
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g---------~~~~vvv~~p~~~k~il~~~~~~f~~r 78 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG---------TKTTVIVGHHQLAKEVLIKKGKDFSGR 78 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHTTTTTTTBBC
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC---------CCCEEEECCHHHHHHHHHhCcHhhCCC
Confidence 34788876432 135677788899999888763 235677889999999987654444443
No 233
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=33.91 E-value=1.4e+02 Score=21.78 Aligned_cols=61 Identities=5% Similarity=0.045 Sum_probs=37.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhh-------CCCEEEEEEeecCCCCCcc--cEEE-EEeCCHHHHHHHHh
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQ-------FGDILEAVIISDKNTGKSK--GYGF-VTFRDPESARRACD 75 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~-------~G~I~~v~i~~d~~tg~~k--G~aF-V~F~~~~~A~~Al~ 75 (259)
..+.|.+-.|..++++++++++.+. .-.|+++.+-.+.. +..+ -++| ++|++.++.+.-..
T Consensus 21 mI~HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~Y~~ 91 (116)
T 3bgu_A 21 GIRHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRAYQD 91 (116)
T ss_dssp EEEEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHHHHH
T ss_pred cEEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHHHhc
Confidence 3455556678888888876665543 44577777766643 3333 3443 58888887765443
No 234
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=33.80 E-value=1.3e+02 Score=24.11 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=34.4
Q ss_pred EEEEcCCCC-C--------CCHHHHHHHH--hhCCCEEEEEEeecCCCCCcccEEEEEeCCH-HHHHHHH
Q 039503 17 KVFVGGLAW-E--------TPTEEMRRYF--EQFGDILEAVIISDKNTGKSKGYGFVTFRDP-ESARRAC 74 (259)
Q Consensus 17 ~lfVgnLp~-~--------~te~~L~~~F--~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~-~~A~~Al 74 (259)
.+.|-|++. . .+..+|++.| +.|..++ |+.+.+. ..+.|++.|+|.+- .....|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHH
Confidence 345667664 1 3446889977 8898765 4444443 34789999999743 3334443
No 235
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=33.43 E-value=82 Score=22.77 Aligned_cols=58 Identities=10% Similarity=0.149 Sum_probs=41.6
Q ss_pred CCCCCCHHHHHHHH-hhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEE
Q 039503 23 LAWETPTEEMRRYF-EQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANC 88 (259)
Q Consensus 23 Lp~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V 88 (259)
++.-+.-++|.... ..||.-.++..+.+ .-.|-..+.++.++||+.++....-+-|+|
T Consensus 36 f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs~~~kSLrI 94 (100)
T 2npt_B 36 FPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRSIHMKSLKI 94 (100)
T ss_dssp ECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHHHCSSCCSEEE
T ss_pred cCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhccCccccceEE
Confidence 45567777776655 67999888877643 267889999999999999885433333443
No 236
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=31.67 E-value=68 Score=22.89 Aligned_cols=62 Identities=11% Similarity=0.135 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHH-hhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEEEcc
Q 039503 23 LAWETPTEEMRRYF-EQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCNIAS 92 (259)
Q Consensus 23 Lp~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~~a~ 92 (259)
++.-+.-++|..-. ..||.-.++..+.+ --.|-..+.++.++||+.++....-+.|+|-+..
T Consensus 20 f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs~~mkSLRIlL~~ 82 (94)
T 2jrh_A 20 FSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRSSSMKSLRILLLS 82 (94)
T ss_dssp ECSSCCHHHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHHHSTTTTEEEEEEEE
T ss_pred cCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhccCccccceEEEEEc
Confidence 34556777776544 67999888877633 2578889999999999998855444455554443
No 237
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=31.44 E-value=61 Score=22.95 Aligned_cols=26 Identities=12% Similarity=0.224 Sum_probs=21.0
Q ss_pred CEEEEEEeecCCCCCcccEEEEEeCC
Q 039503 41 DILEAVIISDKNTGKSKGYGFVTFRD 66 (259)
Q Consensus 41 ~I~~v~i~~d~~tg~~kG~aFV~F~~ 66 (259)
+|++|+|..-...++-|+||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 58888887666668889999999975
No 238
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=30.99 E-value=1e+02 Score=22.50 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=27.3
Q ss_pred CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCC
Q 039503 41 DILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPV 80 (259)
Q Consensus 41 ~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~ 80 (259)
.|.++... ...|||-|||=.+..++++||+.+.+.
T Consensus 40 ~I~Si~~~-----~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAP-----EHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEEC-----TTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEec-----CCCceEEEEEeCCHHHHHHHHhcccce
Confidence 36666443 225999999999999999999998754
No 239
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=30.99 E-value=1.4e+02 Score=20.96 Aligned_cols=57 Identities=14% Similarity=0.023 Sum_probs=35.6
Q ss_pred EEEcCCCCCCCHHHHHHHHh-------hCCCEEEEEEeecCCCCCccc--EE-EEEeCCHHHHHHHHh
Q 039503 18 VFVGGLAWETPTEEMRRYFE-------QFGDILEAVIISDKNTGKSKG--YG-FVTFRDPESARRACD 75 (259)
Q Consensus 18 lfVgnLp~~~te~~L~~~F~-------~~G~I~~v~i~~d~~tg~~kG--~a-FV~F~~~~~A~~Al~ 75 (259)
|.+-.|..++++++++++.+ +.-.|+++.+-.+.. +..++ ++ .++|++.++.+.-..
T Consensus 8 iVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~Y~~ 74 (103)
T 2qyc_A 8 VVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDAYQV 74 (103)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHHHhC
Confidence 34445777888776554432 466788888877653 33333 44 358888888766443
No 240
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=30.31 E-value=94 Score=18.87 Aligned_cols=55 Identities=13% Similarity=0.251 Sum_probs=38.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCC---HHHHHHHHhCC
Q 039503 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRD---PESARRACDNP 77 (259)
Q Consensus 17 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~---~~~A~~Al~~~ 77 (259)
++.|.++.-..-...|++.+.+.-.|.++.+... .+...|+|.. .+...++|+.+
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 60 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYP------KGTAQLAIVPGTSPDALTAAVAGL 60 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETT------TTEEEEEECTTSCHHHHHHHHHTT
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCHHHHHHHHHHC
Confidence 5778888766566788999999888888887543 3456777763 45666677665
No 241
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=29.22 E-value=1.1e+02 Score=20.50 Aligned_cols=56 Identities=14% Similarity=0.297 Sum_probs=39.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeC----CHHHHHHHHhCC
Q 039503 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFR----DPESARRACDNP 77 (259)
Q Consensus 16 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~----~~~~A~~Al~~~ 77 (259)
.+|.|.++.-..-...|++.+.+.-.|.++.+... .+-+.|+|. +.++..++|+.+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~------~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLE------NRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETT------TTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 46778877655555678899988888988887543 346788885 345677777776
No 242
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=29.02 E-value=1.1e+02 Score=19.23 Aligned_cols=56 Identities=13% Similarity=0.190 Sum_probs=41.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeC----CHHHHHHHHhCC
Q 039503 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFR----DPESARRACDNP 77 (259)
Q Consensus 16 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~----~~~~A~~Al~~~ 77 (259)
.+|.|.++.-.--...|++.+.+.-.|.++.+... .+-+.|+|. +.++..++|+.+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL------QNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 46778888766666789999999888988887553 346788885 456777777654
No 243
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=28.42 E-value=1.6e+02 Score=21.76 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=37.6
Q ss_pred HHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCC
Q 039503 29 TEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNP 79 (259)
Q Consensus 29 e~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~ 79 (259)
.+++.+.+..+-+|.+|..+. |...-+..|.+.+.++.++.+..+..
T Consensus 78 ~~~~~~~l~~~p~V~~~~~~t----G~~d~~~~v~~~~~~~l~~~~~~l~~ 124 (144)
T 2cfx_A 78 YERFKSYIQTLPNIEFCYRIA----GAACYMLKINAESLEAVEDFINKTSP 124 (144)
T ss_dssp HHHHHHHHHTCTTEEEEEEEE----SSSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcChhhheeeeee----CCCCEEEEEEECCHHHHHHHHHHhcC
Confidence 567888888999999998764 44456788999999999998876543
No 244
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=28.41 E-value=1e+02 Score=18.73 Aligned_cols=57 Identities=9% Similarity=0.091 Sum_probs=38.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCC----HHHHHHHHhCC
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRD----PESARRACDNP 77 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~----~~~A~~Al~~~ 77 (259)
..+|.|.++.-..-...|++.+.+.-.|..+.+-.. .+-..|+|.. .+...++|+.+
T Consensus 6 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 66 (71)
T 2l3m_A 6 QLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLA------EGTVEVTIDSSVVTLKDIVAVIEDQ 66 (71)
T ss_dssp EEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTSCHHHHHHHHHHT
T ss_pred EEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 346788888655555678889988877888877543 3457777753 44555666543
No 245
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=28.10 E-value=95 Score=19.19 Aligned_cols=56 Identities=9% Similarity=0.182 Sum_probs=39.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeC---CHHHHHHHHhCC
Q 039503 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFR---DPESARRACDNP 77 (259)
Q Consensus 16 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~---~~~~A~~Al~~~ 77 (259)
.++.|.++.-.--...|++.+.+...|.++.+... .+-+.|+|. +.++..++|+..
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 62 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVERA 62 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHHT
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHHc
Confidence 46788888766667789999999888988887553 335677774 345566666654
No 246
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=27.48 E-value=75 Score=23.10 Aligned_cols=26 Identities=8% Similarity=0.254 Sum_probs=20.9
Q ss_pred CEEEEEEeecCCCCCcccEEEEEeCC
Q 039503 41 DILEAVIISDKNTGKSKGYGFVTFRD 66 (259)
Q Consensus 41 ~I~~v~i~~d~~tg~~kG~aFV~F~~ 66 (259)
+|++|+|..-...++-++||=|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 58888887665568889999999975
No 247
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=27.42 E-value=1.6e+02 Score=20.58 Aligned_cols=53 Identities=9% Similarity=0.159 Sum_probs=35.2
Q ss_pred EEcCCCCCCCHHHHHHHHhh-CC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 039503 19 FVGGLAWETPTEEMRRYFEQ-FG-DILEAVIISDKNTGKSKGYGFVTFRDPESARRAC 74 (259)
Q Consensus 19 fVgnLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al 74 (259)
|+-.++.+.+..+|++.+++ |+ +|.+|..+.-+. + .--|+|++..-++|....
T Consensus 25 ~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~-~--~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 25 LQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD-G--EKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-S--SEEEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCC-C--ceEEEEEECCCCcHHHHH
Confidence 34446789999999999987 55 566776554331 2 234899998776654443
No 248
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=26.83 E-value=1.1e+02 Score=18.35 Aligned_cols=55 Identities=11% Similarity=0.152 Sum_probs=39.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeC----CHHHHHHHHhCC
Q 039503 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFR----DPESARRACDNP 77 (259)
Q Consensus 17 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~----~~~~A~~Al~~~ 77 (259)
++.|.++.-..-...|++.+.+.-.|.++.+... .+...|+|. +.+...++|+.+
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 61 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLK------KEKAVVKFDEANVQATEICQAINEL 61 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHTT
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5788888777677789999999888888877543 345778886 345566666665
No 249
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=26.66 E-value=65 Score=23.60 Aligned_cols=59 Identities=10% Similarity=0.121 Sum_probs=40.6
Q ss_pred CCCCCCHHHHHHHH-hhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCCceEEEE
Q 039503 23 LAWETPTEEMRRYF-EQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDGRRANCN 89 (259)
Q Consensus 23 Lp~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G~~l~V~ 89 (259)
++.-+.-++|..-. ..||.-.++..+.+ --.|-..+.++.++||+.++....-+.|+|-
T Consensus 47 f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLDrs~~mkSLRIl 106 (111)
T 2c60_A 47 FSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRSSSMKSLRIL 106 (111)
T ss_dssp ECSSCCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHHHCSSCCSEEEE
T ss_pred cCCCccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhccCccccceEEE
Confidence 34556777776544 56898888877643 2578889999999999998854333334443
No 250
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=26.54 E-value=66 Score=25.26 Aligned_cols=53 Identities=9% Similarity=0.139 Sum_probs=34.2
Q ss_pred EcCCCCCCCHHHHHHHHhh-CC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHh
Q 039503 20 VGGLAWETPTEEMRRYFEQ-FG-DILEAVIISDKNTGKSKGYGFVTFRDPESARRACD 75 (259)
Q Consensus 20 VgnLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~ 75 (259)
|-.++.+.+..+|++.+++ |+ +|..|..+.-+ .+. -=|||++....+|.+...
T Consensus 93 vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~g~--KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 93 VFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRP-DGK--KKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp EEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECT-TSS--EEEEEEECTTSCHHHHHG
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcC-CCc--eEEEEEcCCCCcHHHHHH
Confidence 3336678899999988877 45 46666555432 122 248999987766655433
No 251
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=26.49 E-value=14 Score=33.36 Aligned_cols=20 Identities=10% Similarity=-0.142 Sum_probs=10.1
Q ss_pred EEEEEeC---CHHHHHHHHh-CCC
Q 039503 59 YGFVTFR---DPESARRACD-NPN 78 (259)
Q Consensus 59 ~aFV~F~---~~~~A~~Al~-~~~ 78 (259)
.+|+... +.+.|.+.|+ .+.
T Consensus 262 ~~~~I~~~s~~~e~A~~fl~~~l~ 285 (449)
T 3iot_A 262 LSAGINAASPNKELAKEFLENYLL 285 (449)
T ss_dssp EEEEEBTTCSCHHHHHHHHHHTTS
T ss_pred eEEEEECCCCCHHHHHHHHHHHhc
Confidence 3444443 4456666665 443
No 252
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=26.42 E-value=81 Score=23.13 Aligned_cols=26 Identities=12% Similarity=0.224 Sum_probs=20.5
Q ss_pred CEEEEEEeecCCCCCcccEEEEEeCC
Q 039503 41 DILEAVIISDKNTGKSKGYGFVTFRD 66 (259)
Q Consensus 41 ~I~~v~i~~d~~tg~~kG~aFV~F~~ 66 (259)
+|++|+|..-...++-|+||=|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 57788877665568889999999975
No 253
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=25.74 E-value=1.7e+02 Score=20.43 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=43.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCC----HHHHHHHHhCCC
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRD----PESARRACDNPN 78 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~----~~~A~~Al~~~~ 78 (259)
...+|.|.++.-..-...|++.+.+.-.|.++.+... .+-+.|+|.. .+...++|+.+.
T Consensus 8 ~~~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~------~~~~~V~~~~~~~~~~~i~~~i~~~G 70 (111)
T 2ofg_X 8 KTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVA------TGRLTVTYDPKQVSEITIQERIAALG 70 (111)
T ss_dssp EEEEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTTCSHHHHHHHHHTTT
T ss_pred eEEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECC------CCEEEEEECCCCCCHHHHHHHHHHcC
Confidence 3456888898877777889999999888888887543 3467888863 456677777654
No 254
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=25.73 E-value=1.2e+02 Score=18.46 Aligned_cols=56 Identities=11% Similarity=0.181 Sum_probs=39.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeC----CHHHHHHHHhCC
Q 039503 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFR----DPESARRACDNP 77 (259)
Q Consensus 16 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~----~~~~A~~Al~~~ 77 (259)
.++.|.++.-..-...|++.+.+.-.|.++.+... .+...|+|. +.+...++|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 5 VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFE------TRQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 46778888776667789999999888888877543 345778875 345566666654
No 255
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=25.50 E-value=1.1e+02 Score=23.81 Aligned_cols=49 Identities=6% Similarity=0.202 Sum_probs=32.6
Q ss_pred CCCCCCCHHHHHHHHhh-CC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 039503 22 GLAWETPTEEMRRYFEQ-FG-DILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73 (259)
Q Consensus 22 nLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~A 73 (259)
.++...+..+|++.+++ |+ +|..|..+.-+. |. -=|||++....+|.+.
T Consensus 93 ~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~-g~--KKAyV~La~~~dAldv 143 (150)
T 4a17_R 93 YVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTIT-GN--KKAYIRLAADSDSLTL 143 (150)
T ss_dssp EECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-SC--EEEEEEECSSSCHHHH
T ss_pred EEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-Cc--EEEEEEcCCCCcHHHH
Confidence 36778999999999887 55 466776554332 22 2489999866555543
No 256
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=24.84 E-value=61 Score=28.66 Aligned_cols=55 Identities=15% Similarity=0.121 Sum_probs=35.5
Q ss_pred EEcCCCCC---CCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCC
Q 039503 19 FVGGLAWE---TPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVID 82 (259)
Q Consensus 19 fVgnLp~~---~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~ 82 (259)
+||||..- -....+.++.++||.|..+++.. .-+|...+.+.++.++......+.
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~i~~vl~~~~~~f~ 77 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAW---------TPVVVLNGLAAVREALVTHGEDTA 77 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETT---------EEEEEEEHHHHHHHHHTTTGGGSC
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEECC---------eeEEEECCHHHHHHHHHhCChhhc
Confidence 57776432 23355788889999998887631 234666788888888765433343
No 257
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=24.82 E-value=1.3e+02 Score=23.31 Aligned_cols=52 Identities=13% Similarity=0.252 Sum_probs=33.7
Q ss_pred EEcCCCCCCCHHHHHHHHhh-CC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 039503 19 FVGGLAWETPTEEMRRYFEQ-FG-DILEAVIISDKNTGKSKGYGFVTFRDPESARRA 73 (259)
Q Consensus 19 fVgnLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~A 73 (259)
||-.++.+.+..+|++.+++ |+ +|..|..+.-+. |. -=|+|++....+|.+.
T Consensus 82 ~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-g~--KKAyV~L~~~~daldv 135 (142)
T 3u5e_X 82 LVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN-GT--KKAYVRLTADYDALDI 135 (142)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTT-SC--EEEEEEECTTCCHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-Cc--eEEEEEeCCCCcHHHH
Confidence 33346778999999998887 55 466776554332 22 2489999866555443
No 258
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=24.60 E-value=1.1e+02 Score=24.01 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=28.6
Q ss_pred CCHHHHHHHHhhCCCEE---EEEEeecCCCCCcccEEEEE
Q 039503 27 TPTEEMRRYFEQFGDIL---EAVIISDKNTGKSKGYGFVT 63 (259)
Q Consensus 27 ~te~~L~~~F~~~G~I~---~v~i~~d~~tg~~kG~aFV~ 63 (259)
.++++|+++-.+.|++. ++.|..|..+|+.+.++|-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 58999999999999874 45566664478888888763
No 259
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=24.39 E-value=65 Score=27.39 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=26.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEee
Q 039503 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIIS 49 (259)
Q Consensus 16 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~ 49 (259)
..+.|+|||..++...|.++++. ..+.++.++.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 46789999999999999999987 6666655543
No 260
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=24.16 E-value=46 Score=17.86 Aligned_cols=13 Identities=31% Similarity=0.744 Sum_probs=11.1
Q ss_pred CCHHHHHHHHhhC
Q 039503 27 TPTEEMRRYFEQF 39 (259)
Q Consensus 27 ~te~~L~~~F~~~ 39 (259)
-+|.+|+++.++|
T Consensus 13 rnekelrdfiekf 25 (28)
T 1fme_A 13 RNEKELRDFIEKF 25 (28)
T ss_dssp CCHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHh
Confidence 3689999999987
No 261
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.11 E-value=39 Score=22.78 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=9.5
Q ss_pred cccEEEEEeCCH
Q 039503 56 SKGYGFVTFRDP 67 (259)
Q Consensus 56 ~kG~aFV~F~~~ 67 (259)
.+..|||.|+|.
T Consensus 36 ~~~~ClV~FeD~ 47 (68)
T 2e5p_A 36 AREVCLVQFEDD 47 (68)
T ss_dssp TTTEEEEEETTT
T ss_pred CCcEEEEEEccC
Confidence 367899999874
No 262
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=23.64 E-value=1.2e+02 Score=21.93 Aligned_cols=48 Identities=17% Similarity=0.351 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHhh-CCC---EEEE-EEeecCCCCCcccEEEEEeCCHHHHHHH
Q 039503 25 WETPTEEMRRYFEQ-FGD---ILEA-VIISDKNTGKSKGYGFVTFRDPESARRA 73 (259)
Q Consensus 25 ~~~te~~L~~~F~~-~G~---I~~v-~i~~d~~tg~~kG~aFV~F~~~~~A~~A 73 (259)
...+..+|++.+.+ |+. +.-| .+...-..+++.|||.| |.+.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 56788999888765 442 2223 23333334566677765 6666665553
No 263
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=23.28 E-value=1.4e+02 Score=21.63 Aligned_cols=47 Identities=9% Similarity=0.177 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHhh-CCC---EEEE-EEeecCCCCCcccEEEEEeCCHHHHHH
Q 039503 25 WETPTEEMRRYFEQ-FGD---ILEA-VIISDKNTGKSKGYGFVTFRDPESARR 72 (259)
Q Consensus 25 ~~~te~~L~~~F~~-~G~---I~~v-~i~~d~~tg~~kG~aFV~F~~~~~A~~ 72 (259)
...+..+|++.+.+ |+. +.-| .+...-..+++.|||.| |.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 56788999887765 342 2223 23333444566777765 666666554
No 264
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=23.26 E-value=1.2e+02 Score=17.88 Aligned_cols=54 Identities=9% Similarity=0.130 Sum_probs=36.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeC---CHHHHHHHHhC
Q 039503 17 KVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFR---DPESARRACDN 76 (259)
Q Consensus 17 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~---~~~~A~~Al~~ 76 (259)
++.|.++.-..-...|++.+.+...|..+.+... .+...|+|. +.+...++|+.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 60 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE------KKSVVVEFDAPATQDLIKEALLD 60 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcC------CCEEEEEECCCCCHHHHHHHHHH
Confidence 4667777655556778899988877888877543 345677775 34455555554
No 265
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=23.19 E-value=1.2e+02 Score=23.06 Aligned_cols=47 Identities=9% Similarity=0.051 Sum_probs=30.9
Q ss_pred EcCCCCCCCHHHHHHHHh-hCC--CEEEEEEeecCC----------CCCcccEEEEEeCC
Q 039503 20 VGGLAWETPTEEMRRYFE-QFG--DILEAVIISDKN----------TGKSKGYGFVTFRD 66 (259)
Q Consensus 20 VgnLp~~~te~~L~~~F~-~~G--~I~~v~i~~d~~----------tg~~kG~aFV~F~~ 66 (259)
|-.+..-++++++++++. .+. +|.++.+-..+. .....+|-|+.|.+
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~ 127 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTT 127 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTT
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeC
Confidence 556777899999999995 444 577766432211 12235788888876
No 266
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=22.77 E-value=1.7e+02 Score=19.35 Aligned_cols=52 Identities=10% Similarity=0.008 Sum_probs=39.6
Q ss_pred CHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhCCCCCCCC
Q 039503 28 PTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDNPNPVIDG 83 (259)
Q Consensus 28 te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~~~~~i~G 83 (259)
..+++.+.+.++-+|.+|..+. |..-=...|.+.|.++.++.+...-..+.|
T Consensus 14 ~~~~~~~~l~~~peV~e~~~vt----G~~D~ll~v~~~d~~~l~~~i~~~l~~~~g 65 (83)
T 2cvi_A 14 KEREVMEKLLAMPEVKEAYVVY----GEYDLIVKVETDTLKDLDQFITEKIRKMPE 65 (83)
T ss_dssp CHHHHHHHHHTSTTEEEEEECB----SSCSEEEEEEESSHHHHHHHHHTTGGGCTT
T ss_pred CHHHHHHHHhCCCCeeEEEEEc----ccCCEEEEEEECCHHHHHHHHHHHhccCCC
Confidence 4578888999999999998864 555567789999999999988643323433
No 267
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=22.54 E-value=2.3e+02 Score=20.70 Aligned_cols=60 Identities=15% Similarity=0.228 Sum_probs=36.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHH-------hhCCCEEEEEEeecCCCCCcccEEE-EEeCCHHHHHHH
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYF-------EQFGDILEAVIISDKNTGKSKGYGF-VTFRDPESARRA 73 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F-------~~~G~I~~v~i~~d~~tg~~kG~aF-V~F~~~~~A~~A 73 (259)
..+.|.+-.|..++++++++++. .+.-.|+++.+-.+......-.++| ++|++.++.+.-
T Consensus 20 mI~HIVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~~~~~~~d~~l~~~F~s~edl~~Y 87 (120)
T 3bde_A 20 MIRHTVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISPKIDYHFGFSMEFADQAAYTRY 87 (120)
T ss_dssp CEEEEEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECCCSSSCCCEEEEEEESSHHHHHHH
T ss_pred cEEEEEEEEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCCCCCCCccEEEEEEECCHHHHHHH
Confidence 34445555677777777655544 3456788888776643211134554 588888877653
No 268
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=22.48 E-value=2.1e+02 Score=20.31 Aligned_cols=61 Identities=11% Similarity=0.067 Sum_probs=38.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHh-------hCCCEEEEEEeecCCC-CCccc--EE-EEEeCCHHHHHHHHh
Q 039503 15 FTKVFVGGLAWETPTEEMRRYFE-------QFGDILEAVIISDKNT-GKSKG--YG-FVTFRDPESARRACD 75 (259)
Q Consensus 15 ~~~lfVgnLp~~~te~~L~~~F~-------~~G~I~~v~i~~d~~t-g~~kG--~a-FV~F~~~~~A~~Al~ 75 (259)
.+.|.+-.|..+++++++.++.+ +.-.|+++.+-.+... +..++ ++ .++|++.++.+.-..
T Consensus 11 i~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~~ 82 (112)
T 1q4r_A 11 VKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYIA 82 (112)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHHHhC
Confidence 34455556888888887655543 3556777777665432 23333 34 468999988876554
No 269
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=22.31 E-value=1.5e+02 Score=18.33 Aligned_cols=56 Identities=9% Similarity=0.200 Sum_probs=38.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCC----HHHHHHHHhCC
Q 039503 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRD----PESARRACDNP 77 (259)
Q Consensus 16 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~----~~~A~~Al~~~ 77 (259)
.+|.|.++.-..-...|++.+.+.-.|.++.+... .+.+.|.|.. .+...++|+.+
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 4 VTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 35778888655555678899998888888877543 3457788853 45566666654
No 270
>3bn7_A Ferredoxin-like protein; stress responsive A/B barre structural genomics, joint center for structural genomics; HET: MSE; 1.64A {Caulobacter crescentus}
Probab=22.05 E-value=1.9e+02 Score=21.12 Aligned_cols=61 Identities=10% Similarity=-0.009 Sum_probs=36.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHh------hCCCEEEEEEeecCCC----CCcc--cEEE-EEeCCHHHHHHHH
Q 039503 14 TFTKVFVGGLAWETPTEEMRRYFE------QFGDILEAVIISDKNT----GKSK--GYGF-VTFRDPESARRAC 74 (259)
Q Consensus 14 ~~~~lfVgnLp~~~te~~L~~~F~------~~G~I~~v~i~~d~~t----g~~k--G~aF-V~F~~~~~A~~Al 74 (259)
..+-|.+-.|..++++++++++.+ +.-.|+++.+-.+... +..+ -++| ++|++.++.+.-.
T Consensus 20 mi~HIVlfklK~~~~~~~~~~~~~~l~~L~~Ip~i~~~~vG~~~s~e~R~~~~~g~d~~l~~~F~s~edl~~Y~ 93 (120)
T 3bn7_A 20 MLFHQVFFWLKNPGDKADRDKLIAGLKALKAIDVIQQLHVGVPAATEKRDVVDNSYDVSELMVFKSVEDQKRYR 93 (120)
T ss_dssp CEEEEEEEEESSTTCHHHHHHHHHHHHGGGGSTTCSEEEEECCCCCCCCTTCCCCCSEEEEEEESSHHHHHHHH
T ss_pred cEEEEEEEEECCCCCHHHHHHHHHHHHhccCCCCeEEEEEccCCCcccccccCCCccEEEEEEECCHHHHHHHh
Confidence 344555556888888887655543 3456777777665432 2233 3444 5888887766543
No 271
>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1
Probab=21.97 E-value=1.4e+02 Score=20.85 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=28.0
Q ss_pred EEEEeCC----HHHHHHHHhCCC-C---CCCCceEEEEEcccCCCCC
Q 039503 60 GFVTFRD----PESARRACDNPN-P---VIDGRRANCNIASLGRPRP 98 (259)
Q Consensus 60 aFV~F~~----~~~A~~Al~~~~-~---~i~G~~l~V~~a~~~~~~~ 98 (259)
-.|...| ..++++||...+ + ..+|..|+|.+-..-+.++
T Consensus 36 l~I~p~D~~~~~~~IekAI~~S~LglnP~~dG~~Iri~iP~lTeErR 82 (84)
T 1wih_A 36 ILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTSGPS 82 (84)
T ss_dssp EEEECTTCTTSHHHHHHHHHTTTCCCCCEEETTEEEEECCCSSCSSC
T ss_pred EEEEecccHHHHHHHHHHHHHCCCCCCcccCCCEEEEeCCCCChhcc
Confidence 3455544 778999999865 3 3789999999887655543
No 272
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=21.73 E-value=1.7e+02 Score=19.02 Aligned_cols=44 Identities=9% Similarity=0.073 Sum_probs=36.1
Q ss_pred CHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHh
Q 039503 28 PTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACD 75 (259)
Q Consensus 28 te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~ 75 (259)
..+++.+.+..+-+|.+|..+. |..-=...|.+.|.++.++.+.
T Consensus 14 ~~~~~~~~l~~~peV~~~~~vt----G~~d~l~~v~~~d~~~l~~~~~ 57 (83)
T 2zbc_A 14 GEDEVFERLKSMSEVTEVHVVY----GVYDIVVKVEADSMDKLKDFVT 57 (83)
T ss_dssp CHHHHHHHHTTCTTEEEEEECS----SSCSEEEEEECSSHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCeEEEEEEe----ccCCEEEEEEECCHHHHHHHHH
Confidence 4578888899999999998864 5556677889999999998885
No 273
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=21.51 E-value=1.4e+02 Score=21.81 Aligned_cols=47 Identities=17% Similarity=0.091 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHhh-CCC---EEEE-EEeecCCCCCcccEEEEEeCCHHHHHH
Q 039503 25 WETPTEEMRRYFEQ-FGD---ILEA-VIISDKNTGKSKGYGFVTFRDPESARR 72 (259)
Q Consensus 25 ~~~te~~L~~~F~~-~G~---I~~v-~i~~d~~tg~~kG~aFV~F~~~~~A~~ 72 (259)
...+..+|++.+.+ |+. +.-| .+...-..+++.|||.| |++.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 36788888887754 443 2222 22233334566777766 667666655
No 274
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=20.45 E-value=2.1e+02 Score=19.34 Aligned_cols=45 Identities=11% Similarity=0.204 Sum_probs=36.4
Q ss_pred CHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHhC
Q 039503 28 PTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPESARRACDN 76 (259)
Q Consensus 28 te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Al~~ 76 (259)
..+++.+.+.++-+|.+|..+. |..-=...|.+.|.++.++.+..
T Consensus 14 ~~~~~~~~l~~~peV~~~~~vt----G~~D~ll~v~~~d~~~l~~~l~~ 58 (92)
T 2djw_A 14 RVQALGEAIAELPQVAEVYSVT----GPYDLVALVRLKDVEELDDVVTQ 58 (92)
T ss_dssp GHHHHHHHHTTSTTEEEEEEES----SSSSEEEEEEESSGGGHHHHCCC
T ss_pred CHHHHHHHHhcCCCeEEEEEee----cCCCEEEEEEECCHHHHHHHHHH
Confidence 3577888889999999998874 55566788999999999998753
No 275
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=20.12 E-value=51 Score=22.82 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=9.4
Q ss_pred cccEEEEEeCCH
Q 039503 56 SKGYGFVTFRDP 67 (259)
Q Consensus 56 ~kG~aFV~F~~~ 67 (259)
.+..|||.|+|.
T Consensus 53 ~~e~ClV~F~D~ 64 (79)
T 2m0o_A 53 AREVCLVQFEDD 64 (79)
T ss_dssp TTTEEEEEETTS
T ss_pred CCCEEEEEEcCC
Confidence 366899999874
No 276
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=20.08 E-value=1.3e+02 Score=18.21 Aligned_cols=56 Identities=14% Similarity=0.245 Sum_probs=36.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEeCC----HHHHHHHHhCC
Q 039503 16 TKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRD----PESARRACDNP 77 (259)
Q Consensus 16 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~----~~~A~~Al~~~ 77 (259)
.++.|.++.-..-...|++.+.+.-.|.++.+... .+-+.|.|.. .+...++|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 5 TVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLA------NSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCcCCHHHHHHHHHHC
Confidence 45777777654445668888888877877776543 3457788863 34555666543
Done!