BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039504
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 345 bits (886), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 161/239 (67%), Positives = 198/239 (82%)
Query: 2 CLHFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGEN 61
CLHF+ L++ADE++ P+V I PDD VALP+SSGTTGLPKGV+LTHK LITSVAQQVDG+N
Sbjct: 156 CLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDN 215
Query: 62 PNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXX 121
PNLY + DV+LCVLP+FHIY+LNS++LC LR GA +L+M KFEIG+LL LI++++VS
Sbjct: 216 PNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIA 275
Query: 122 XXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA 181
K+P + +DLSS+R++ SG APLGKELED +R++ PQA LGQGYGMTEA
Sbjct: 276 PVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEA 335
Query: 182 GPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
GPVL+MCL FAK+PF K G+CGTVVRNAE+K++DPETGASLP NQPGEICIRG QIMK
Sbjct: 336 GPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMK 394
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 330 bits (845), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 161/242 (66%), Positives = 189/242 (78%), Gaps = 3/242 (1%)
Query: 2 CLHFTVLSEADEDQ---IPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVD 58
CL FT L+++ + I V I PDD VALP+SSGTTGLPKGV+LTHK L+TSVAQQVD
Sbjct: 200 CLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVD 259
Query: 59 GENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRV 118
GENPNLY + DV+LCVLP+FHIY+LNS++LC LR GA +L+M KFEI LLELIQR +V
Sbjct: 260 GENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKV 319
Query: 119 SXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGM 178
+ K+ YDLSSIRVV SGAAPLGKELEDA+ ++ P A LGQGYGM
Sbjct: 320 TVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGM 379
Query: 179 TEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQI 238
TEAGPVL+M LGFAK+PFP KSG+CGTVVRNAE+K++DP+TG SL NQPGEICIRG QI
Sbjct: 380 TEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQI 439
Query: 239 MK 240
MK
Sbjct: 440 MK 441
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 114 bits (284), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 116/229 (50%), Gaps = 6/229 (2%)
Query: 12 DEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDV 71
+ D IP+ + SSG+TGLPKGV LTHK++ + D N + +
Sbjct: 212 EYDYIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPD-TA 270
Query: 72 VLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXX 131
+L V+P H + + + L L G ++LM +FE L +Q +++
Sbjct: 271 ILTVIPFHHGFGMFTTL-GYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFF 329
Query: 132 XKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGF 191
K+ +V YDLS++ + SG APL KE+ +A+ R + QGYG+TE + +
Sbjct: 330 AKSTLVDKYDLSNLHEIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIII---- 385
Query: 192 AKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
+ K G+CG VV K++D +TG +L NQ GE+C++GP IMK
Sbjct: 386 TPRGRDDKPGACGKVVPFFSAKIVDLDTGKTLGVNQRGELCVKGPMIMK 434
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 119/232 (51%), Gaps = 15/232 (6%)
Query: 12 DEDQIPEVAIEPDDPVALPF-SSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGD 70
+ D +PE + + D +AL SSG+TGLPKGV L H++ + D N + +
Sbjct: 178 EYDFVPE-SFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPD-T 235
Query: 71 VVLCVLPLFH---IYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXX 127
+L V+P H +++ L+C R V+LM +FE L +Q +++
Sbjct: 236 AILSVVPFHHGFGMFTTLGYLICGFR----VVLMYRFEEELFLRSLQDYKIQSALLVPTL 291
Query: 128 XXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSM 187
K+ ++ YDLS++ + SG APL KE+ +A+ R + QGYG+TE + +
Sbjct: 292 FSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI 351
Query: 188 CLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239
+P G+ G VV E KV+D +TG +L NQ GE+C+RGP IM
Sbjct: 352 TPEGDDKP-----GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIM 398
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 119/232 (51%), Gaps = 15/232 (6%)
Query: 12 DEDQIPEVAIEPDDPVALPF-SSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGD 70
+ D +PE + + D +AL SSG+TGLPKGV L H++ + D N + +
Sbjct: 178 EYDFVPE-SFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPD-T 235
Query: 71 VVLCVLPLFH---IYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXX 127
+L V+P H +++ L+C R V+LM +FE L +Q +++
Sbjct: 236 AILSVVPFHHGFGMFTTLGYLICGFR----VVLMYRFEEELFLRSLQDYKIQSALLVPTL 291
Query: 128 XXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSM 187
K+ ++ YDLS++ + SG APL KE+ +A+ R + QGYG+TE + +
Sbjct: 292 FSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI 351
Query: 188 CLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239
+P G+ G VV E KV+D +TG +L NQ GE+C+RGP IM
Sbjct: 352 TPEGDDKP-----GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIM 398
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 119/232 (51%), Gaps = 15/232 (6%)
Query: 12 DEDQIPEVAIEPDDPVALPF-SSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGD 70
+ D +PE + + D +AL SSG+TGLPKGV L H++ + D N + +
Sbjct: 183 EYDFVPE-SFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPD-T 240
Query: 71 VVLCVLPLFH---IYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXX 127
+L V+P H +++ L+C R V+LM +FE L +Q +++
Sbjct: 241 AILSVVPFHHGFGMFTTLGYLICGFR----VVLMYRFEEELFLRSLQDYKIQSALLVPTL 296
Query: 128 XXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSM 187
K+ ++ YDLS++ + SG APL KE+ +A+ R + QGYG+TE + +
Sbjct: 297 FSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI 356
Query: 188 CLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239
+P G+ G VV E KV+D +TG +L NQ GE+C+RGP IM
Sbjct: 357 TPEGDDKP-----GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIM 403
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 117/227 (51%), Gaps = 9/227 (3%)
Query: 14 DQIPEVAIEPDDPVALPF-SSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVV 72
D +PE + + D +AL SSG+TGLPKGV L H++L + D N + +
Sbjct: 185 DFVPE-SFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSHARDPIFGN-QIAPDTAI 242
Query: 73 LCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXX 132
L V+P H + + + L L +G V+LM +FE L +Q +++
Sbjct: 243 LSVVPFHHGFGMFTTL-GYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFLA 301
Query: 133 KNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFA 192
K+ ++ YDLS++ + SG APL KE+ +A+ R + QGYG+TE + +
Sbjct: 302 KSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPKGD 361
Query: 193 KQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239
+P G+ G VV E KV+D +TG +L NQ GE+ +RGP IM
Sbjct: 362 DKP-----GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGPMIM 403
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 14/226 (6%)
Query: 19 VAIEPDDPVALPF-SSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLP 77
V ++ + VAL SSG+TGLPKGV LTH++++T + D N ++ G VL V+P
Sbjct: 186 VEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGN-QVSPGTAVLTVVP 244
Query: 78 LFH---IYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKN 134
H +++ L+C R V+++ KF+ L+ +Q ++ + K+
Sbjct: 245 FHHGFGMFTTLGYLICGFR----VVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS 300
Query: 135 PMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQ 194
++ YDLS++ + SG APL KE+ +A+ R + QGYG+TE + + +
Sbjct: 301 ELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDK 360
Query: 195 PFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
P G+ G VV + KVID +T SL N+ GE+C++GP +MK
Sbjct: 361 P-----GASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMK 401
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 14/226 (6%)
Query: 19 VAIEPDDPVALPF-SSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLP 77
V ++ + VAL SSG+TGLPKGV LTH++++T + D N ++ G VL V+P
Sbjct: 186 VEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGN-QVSPGTAVLTVVP 244
Query: 78 LFH---IYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKN 134
H +++ L+C R V+++ KF+ L+ +Q ++ + K+
Sbjct: 245 FHHGFGMFTTLGYLICGFR----VVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS 300
Query: 135 PMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQ 194
++ YDLS++ + SG APL KE+ +A+ R + QGYG+TE + + +
Sbjct: 301 ELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDK 360
Query: 195 PFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
P G+ G VV + KVID +T SL N+ GE+C++GP +MK
Sbjct: 361 P-----GASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMK 401
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 14/226 (6%)
Query: 19 VAIEPDDPVALPF-SSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLP 77
V ++ + VAL SSG+TGLPKGV LTH++++T + D N ++ G VL V+P
Sbjct: 186 VEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGN-QVSPGTAVLTVVP 244
Query: 78 LFH---IYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKN 134
H +++ L+C R V+++ KF+ L+ +Q ++ + K+
Sbjct: 245 FHHGFGMFTTLGYLICGFR----VVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILNKS 300
Query: 135 PMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQ 194
++ YDLS++ + SG APL KE+ +A+ R + QGYG+TE + + +
Sbjct: 301 ELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDK 360
Query: 195 PFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
P G+ G VV + KVID +T SL N+ GE+C++GP +MK
Sbjct: 361 P-----GASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMK 401
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 97/217 (44%), Gaps = 12/217 (5%)
Query: 24 DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYS 83
DD A+ ++SGTTG KG L+H +L ++ VD T DV++ LP++H +
Sbjct: 155 DDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVD----YWRFTPDDVLIHALPIYHTHG 210
Query: 84 LNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLS 143
L +L A + + KF+ +L+L R V ++P +
Sbjct: 211 LFVASNVTLFARGSXIFLPKFDPDKILDLXARATV--LXGVPTFYTRLLQSPRLTKETTG 268
Query: 144 SIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSC 203
R+ +SG+APL + ++ A+L + YG TE S + P G+
Sbjct: 269 HXRLFISGSAPLLADTHREWSAKTGHAVL-ERYGXTETNXNTSNPYDGDRVP-----GAV 322
Query: 204 GTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
G + +V DPETG LP G I ++GP + K
Sbjct: 323 GPALPGVSARVTDPETGKELPRGDIGXIEVKGPNVFK 359
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 96/216 (44%), Gaps = 12/216 (5%)
Query: 24 DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYS 83
DD A+ ++SGTTG G +L+H +L ++ VD T DV++ LP++H +
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVD----YWRFTPDDVLIHALPIYHTHG 210
Query: 84 LNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLS 143
L +L A ++ + F+ +L+L+ R V ++P +
Sbjct: 211 LFVASNVTLFARGSMIFLPXFDPDXILDLMARATV--LMGVPTFYTRLLQSPRLTXETTG 268
Query: 144 SIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSC 203
+R+ +SG+APL + + A+L + YGMTE S + P G+
Sbjct: 269 HMRLFISGSAPLLADTHREWSAXTGHAVL-ERYGMTETNMNTSNPYDGDRVP-----GAV 322
Query: 204 GTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239
G + +V DPETG LP G I + GP +
Sbjct: 323 GPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVF 358
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 96/216 (44%), Gaps = 12/216 (5%)
Query: 24 DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYS 83
DD A+ ++SGTTG G +L+H +L ++ VD T DV++ LP++H +
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVD----YWRFTPDDVLIHALPIYHTHG 210
Query: 84 LNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLS 143
L +L A ++ + F+ +L+L+ R V ++P +
Sbjct: 211 LFVASNVTLFARGSMIFLPXFDPDXILDLMARATV--LMGVPTFYTRLLQSPRLTXETTG 268
Query: 144 SIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSC 203
+R+ +SG+APL + + A+L + YGMTE S + P G+
Sbjct: 269 HMRLFISGSAPLLADTHREWSAXTGHAVL-ERYGMTETNMNTSNPYDGDRVP-----GAV 322
Query: 204 GTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239
G + +V DPETG LP G I + GP +
Sbjct: 323 GPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVF 358
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 96/216 (44%), Gaps = 12/216 (5%)
Query: 24 DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYS 83
DD A+ ++SGTTG G +L+H +L ++ VD T DV++ LP++H +
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVD----YWRFTPDDVLIHALPIYHTHG 210
Query: 84 LNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLS 143
L +L A ++ + F+ +L+L+ R V ++P +
Sbjct: 211 LFVASNVTLFARGSMIFLPXFDPDXILDLMARATV--LMGVPTFYTRLLQSPRLTXETTG 268
Query: 144 SIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSC 203
+R+ +SG+APL + + A+L + YGMTE S + P G+
Sbjct: 269 HMRLFISGSAPLLADTHREWSAXTGHAVL-ERYGMTETNMNTSNPYDGDRVP-----GAV 322
Query: 204 GTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239
G + +V DPETG LP G I + GP +
Sbjct: 323 GPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVF 358
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 111/235 (47%), Gaps = 21/235 (8%)
Query: 9 SEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSL---ITSVAQQVDGENPNLY 65
+ ADE P V DD + + ++SGTTG PKGVV TH+S+ +S A +D
Sbjct: 144 AAADE---PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID------- 193
Query: 66 LTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXX 125
+ D +L LP+FH+ +L +V+ ++R G ++ M +F+ + LI RV
Sbjct: 194 VRYRDRLLLPLPMFHVAALTTVIFSAMR-GVTLISMPQFDATKVWSLIVEERVCIGGAVP 252
Query: 126 XXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVL 185
+ P A+ D R ++G AP+ + L ++ + + QGY +TE+
Sbjct: 253 AILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNIEVV--QGYALTESCGGG 310
Query: 186 SMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
++ L + K+GS G ++ V + G H + GE+ I+ ++K
Sbjct: 311 TLLL---SEDALRKAGSAGRATMFTDVAV-RGDDGVIREHGE-GEVVIKSDILLK 360
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 111/235 (47%), Gaps = 21/235 (8%)
Query: 9 SEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSL---ITSVAQQVDGENPNLY 65
+ ADE P V DD + + ++SGTTG PKGVV TH+S+ +S A +D
Sbjct: 158 AAADE---PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID------- 207
Query: 66 LTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXX 125
+ D +L LP+FH+ +L +V+ ++R G ++ M +F+ + LI RV
Sbjct: 208 VRYRDRLLLPLPMFHVAALTTVIFSAMR-GVTLISMPQFDATKVWSLIVEERVCIGGAVP 266
Query: 126 XXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVL 185
+ P A+ D R ++G AP+ + L ++ + + QGY +TE+
Sbjct: 267 AILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNIEVV--QGYALTESCGGG 324
Query: 186 SMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
++ L + K+GS G ++ V + G H + GE+ I+ ++K
Sbjct: 325 TLLL---SEDALRKAGSAGRATMFTDVAV-RGDDGVIREHGE-GEVVIKSDILLK 374
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 114/239 (47%), Gaps = 36/239 (15%)
Query: 16 IPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCV 75
+PE + DP + ++SGTTG PKG V+ ++L T++ D T DV++
Sbjct: 147 VPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADA----WQWTGEDVLVQG 202
Query: 76 LPLFHIYSLNSVLLCSLRAGAGVLLMQKFEI-GALLEL-----------IQRHRVSXXXX 123
LPLFH++ L +L LR G V + +F GA EL HR++
Sbjct: 203 LPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELNDGATMLFGVPTMYHRIAETLP 262
Query: 124 XXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGP 183
+P +A L+ R+++SG+A L + + + + ++ + YGMTE
Sbjct: 263 A---------DPELAKA-LAGARLLVSGSAALPVHDHERIAAATGRRVI-ERYGMTET-- 309
Query: 184 VLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETG---ASLPHNQPGEICIRGPQIM 239
+++ + +P ++G+ G + EL++++ E G A+L GEI +RGP +
Sbjct: 310 LMNTSVRADGEP---RAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLF 364
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 111/256 (43%), Gaps = 28/256 (10%)
Query: 4 HFTVLSEADED---QIPEVAIEPDDPVALP--------FSSGTTGLPKGVVLTHKSLI-- 50
HF V+ E + E E DPV +P +++GTTGLPKGVV +H++L+
Sbjct: 145 HFVVMDEKAPEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLH 204
Query: 51 TSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALL 110
+ A VDG L+ DVVL V+P+FH+ + +L VL + + +L+
Sbjct: 205 SLAASLVDGTA----LSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLV 260
Query: 111 ELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQA 170
EL V+ + L ++R ++ G + + L R
Sbjct: 261 ELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSL--IARFERMGV 318
Query: 171 ILGQGYGMTEAGPVL------SMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLP 224
+ QGYG+TE PV+ S +++ T G + L+V D E G +P
Sbjct: 319 EVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVP 377
Query: 225 HNQP--GEICIRGPQI 238
+ GE+ ++GP I
Sbjct: 378 KDGKALGEVQLKGPWI 393
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 101/237 (42%), Gaps = 20/237 (8%)
Query: 14 DQIPEVAIEPDDPVAL-PFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVV 72
+ V + P++ VAL P++ GTTG PKGV LTH +L + Q L++ D +
Sbjct: 169 EDFENVKVNPEEDVALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATG----LSHXDTI 224
Query: 73 LCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHR--VSXXXXXXXXXXX 130
+ P FH V L + G ++ F L E I++++ S
Sbjct: 225 VGCXPXFHSAEFGLVNL-XVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLV 283
Query: 131 XXKNPMVADYDLSSIRVVLSGAAPLGKELEDAL------RSRVPQAILGQGYGMTEAGPV 184
YD S ++V +GA P+ L + L + P+ Q +G TEA P
Sbjct: 284 NTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPX 343
Query: 185 LSMCLGFAKQPFP-TKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
++ P KS + G + ELKVI E G L + GEI IRGP I K
Sbjct: 344 VT-----TNPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFK 395
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 100/235 (42%), Gaps = 19/235 (8%)
Query: 6 TVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLY 65
TV+ + I + DD ++ F+SGTTG K V T ++ S G +L
Sbjct: 145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAI----GCKESLG 200
Query: 66 LTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXX 125
L VLP++HI L SVLL ++ G V ++ KF +L +I+ R++
Sbjct: 201 FDRDTNWLSVLPIYHISGL-SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVP 259
Query: 126 XXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVL 185
+ + Y+L +++L GA +E AL+ +P + +GMTE
Sbjct: 260 QTLNWLMQQGLHEPYNLQ--KILLGGAKLSATMIETALQYNLP---IYNSFGMTET---C 311
Query: 186 SMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
S L + + + G N ++K+ +P GE+ I+G +M
Sbjct: 312 SQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGH------GELMIKGANVMN 360
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 91/215 (42%), Gaps = 11/215 (5%)
Query: 24 DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYS 83
DD +SSG+TG PKG V TH +L + P L + DVV LF Y
Sbjct: 183 DDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYA---KPILGIAENDVVFSAAKLFFAYG 239
Query: 84 LNSVLLCSLRAGAGVLLM-QKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDL 142
L + L L GA +LM ++ A+ + HR + +P +
Sbjct: 240 LGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARAD 299
Query: 143 SSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGS 202
+IR+ S L +E+ + + IL G G TE + + + + + G+
Sbjct: 300 VAIRICTSAGEALPREIGERFTAHFGCEIL-DGIGSTEM-----LHIFLSNRAGAVEYGT 353
Query: 203 CGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQ 237
G V E+++ D E G ++P + G++ I+GP
Sbjct: 354 TGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPS 387
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 17/209 (8%)
Query: 32 SSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCS 91
++ G P+G +++ +L+ + + VD LT DV L +LPLFH+ L ++L
Sbjct: 168 TAAVGGRPRGALISQGNLLIAQSSLVDAWR----LTEADVNLGMLPLFHVTGLG-LMLTL 222
Query: 92 LRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSG 151
+AG ++ KF+ I+ H+V+ A L+S+R V
Sbjct: 223 QQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQ--AAPAQLASLRAVTGL 280
Query: 152 AAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAE 211
P E + + P A +G +E + + P+ + S G +
Sbjct: 281 DTP---ETIERFEATCPNATFWATFGQSETSGLSTFA------PYRDRPKSAGRPLFWRT 331
Query: 212 LKVIDPETGASLPHNQPGEICIRGPQIMK 240
+ V+D E LP + GEI +RGP + K
Sbjct: 332 VAVVDAED-RPLPPGEVGEIVLRGPTVFK 359
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 19/175 (10%)
Query: 22 EPDDPVALPFSSGTTGLPKGVVLTHK---SLITSVAQQVDGENPNLYLTNGDVVLCVLPL 78
EP P + ++SGTTGLPK ++ + S + ++ QV L +VVL ++PL
Sbjct: 151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGLMPL 205
Query: 79 FHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMV- 137
+H+ +VL+ +L +++++F L+L+Q+ +V+
Sbjct: 206 YHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHA 265
Query: 138 -ADYDLSSIR-VVLSGAAPLGKELEDALRSRVPQAILGQ---GYGMTEAGPVLSM 187
+ L S+R V +GA + DA+ V Q + G+ GYG TEA L M
Sbjct: 266 GSSLKLDSLRHVTFAGAT-----MPDAVLETVHQHLPGEKVNGYGTTEAMNSLYM 315
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 19/175 (10%)
Query: 22 EPDDPVALPFSSGTTGLPKGVVLTHK---SLITSVAQQVDGENPNLYLTNGDVVLCVLPL 78
EP P + ++SGTTGLPK ++ + S + ++ QV L +VVL ++PL
Sbjct: 151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGLMPL 205
Query: 79 FHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMV- 137
+H+ +VL+ +L +++++F L+L+Q+ +V+
Sbjct: 206 YHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHA 265
Query: 138 -ADYDLSSIR-VVLSGAAPLGKELEDALRSRVPQAILGQ---GYGMTEAGPVLSM 187
+ L S+R V +GA + DA+ V Q + G+ YG TEA L M
Sbjct: 266 GSSLKLDSLRHVTFAGAT-----MPDAVLETVHQHLPGEKVNAYGTTEAMNSLYM 315
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 22 EPDDPVALPFSSGTTGLPKGVVLTHK---SLITSVAQQVDGENPNLYLTNGDVVLCVLPL 78
EP P + ++SGTTGLPK ++ + S + ++ QV L +VVL ++PL
Sbjct: 151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGLMPL 205
Query: 79 FHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVS 119
+H+ +VL+ +L +++++F L+L+Q+ +V+
Sbjct: 206 YHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVT 246
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 94/221 (42%), Gaps = 21/221 (9%)
Query: 23 PDDPVAL-PFSSGTTGLPKGVVLTHKSLITSV--AQQVDGENPNLYLTNGDVVLCVLPLF 79
P D VA S G+TG PK + TH SV + ++ G N N L LC LP
Sbjct: 189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRL------LCALPAP 242
Query: 80 HIYSLNSV-LLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVA 138
H + L+S L L AG V++ E +IQRH+V+ +
Sbjct: 243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQY 302
Query: 139 DYDLSSIRVVLSGAAPLGKELEDALRSRVPQAI---LGQGYGMTEAGPVLSMCLGFAKQP 195
+ S++++ G G ++L +VP+ + L Q +GM E + +Q
Sbjct: 303 KDQIQSLKLLQVG----GASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQI 358
Query: 196 FPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGP 236
F T+ + + E+K++D E +P + G + RGP
Sbjct: 359 FTTQGRPISS---DDEIKIVD-EQYREVPEGEIGMLATRGP 395
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 22 EPDDPVALPFSSGTTGLPKGVVLTHK---SLITSVAQQVDGENPNLYLTNGDVVLCVLPL 78
EP P + ++SGTTGLPK ++ + S + ++ QV L +VVL ++PL
Sbjct: 151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGLMPL 205
Query: 79 FHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVS 119
+H+ +VL+ +L +++++F L+L+Q+ +V+
Sbjct: 206 YHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVT 246
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 22 EPDDPVALPFSSGTTGLPKGVVLTHK---SLITSVAQQVDGENPNLYLTNGDVVLCVLPL 78
EP P + ++SGTTGLPK ++ + S + ++ QV L +VVL ++PL
Sbjct: 151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGLMPL 205
Query: 79 FHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVS 119
+H+ +VL+ +L +++++F L+L+Q+ +V+
Sbjct: 206 YHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVT 246
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 17/165 (10%)
Query: 7 VLSEADEDQIPE--VAIE---PDDPVALPFSSGTTGLPKGVVLTHKSLITSV-AQQVDGE 60
VLS A +PE VA++ P+D L ++SG+T P+GV++TH+ + ++ A DG
Sbjct: 153 VLSHAWFKALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDG- 211
Query: 61 NPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV--LLMQKFEIGAL--LELIQRH 116
+ L GD + LP +H L LL + V L Q F L L+LI ++
Sbjct: 212 ---IKLRPGDRCVSWLPFYHDXGLVGFLLTPVATQLSVDYLRTQDFAXRPLQWLKLISKN 268
Query: 117 R--VSXXXXXXXXXXXXXKNPM-VADYDLSSIRVVLSGAAPLGKE 158
R VS N +A+ DLS RV GA P+ E
Sbjct: 269 RGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAE 313
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 89/225 (39%), Gaps = 9/225 (4%)
Query: 17 PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVL 76
PE A++ D+ + ++SG+TG PKGV +T+ L++ V+ N L G V L
Sbjct: 137 PEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFN----LQTGQVFLNQA 192
Query: 77 PLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPM 136
P S+ + SL G + + K I +L S M
Sbjct: 193 PFSFDLSVMDI-YPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLM 251
Query: 137 VADYD---LSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAK 193
A + L +++ L L E+ L R P+A + YG TEA ++ +
Sbjct: 252 EASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEE 311
Query: 194 QPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQI 238
KS G + L +I E G P + GEI I GP +
Sbjct: 312 VLDQYKSLPVGYCKSDCRL-LIMKEDGTIAPDGEKGEIVIVGPSV 355
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 89/225 (39%), Gaps = 9/225 (4%)
Query: 17 PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVL 76
PE A++ D+ + ++SG+TG PKGV +T+ L++ V+ N L G V L
Sbjct: 137 PEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFN----LQTGQVFLNQA 192
Query: 77 PLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPM 136
P S+ + SL G + + K I +L S M
Sbjct: 193 PFSFDLSVMDI-YPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLM 251
Query: 137 VADYD---LSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAK 193
A + L +++ L L E+ L R P+A + YG TEA ++ +
Sbjct: 252 EASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEE 311
Query: 194 QPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQI 238
KS G + L +I E G P + GEI I GP +
Sbjct: 312 VLDQYKSLPVGYCKSDCRL-LIMKEDGTIAPDGEKGEIVIVGPSV 355
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSV---AQQVDGENPNLYLTNGDVVLCVLPL 78
EP P + ++SGTTGLPK ++ ++ + V + QV L +VVL + PL
Sbjct: 151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQV-----GLRHGRHNVVLGLXPL 205
Query: 79 FHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVS 119
+H+ +VL+ +L +++++F L+L+Q+ +V+
Sbjct: 206 YHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVT 246
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 74/171 (43%), Gaps = 16/171 (9%)
Query: 15 QIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLC 74
++PEV + D L S G+TGL K + TH I S+ + V+ +L + V L
Sbjct: 175 KLPEV--KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE----VCWLDHSTVYLA 228
Query: 75 VLPLFHIYSLNSV-LLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXK 133
LP+ H Y L+S +L L AG V+L LI+R +V+
Sbjct: 229 ALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMD 288
Query: 134 NPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILG----QGYGMTE 180
DLSS++V+ G A E +R +A+ G Q +GM E
Sbjct: 289 AASSRRDDLSSLQVLQVGGAKFSAEA-----ARRVKAVFGCTLQQVFGMAE 334
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 92/225 (40%), Gaps = 19/225 (8%)
Query: 23 PDDPVA-LPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 81
P D VA S GTTG PK + TH SV + V+ T LC +P H
Sbjct: 182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE----ICQFTQQTRYLCAIPAAHN 237
Query: 82 YSLNSV-LLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVAD- 139
Y+++S L AG V+L LI++H+V+ + + +
Sbjct: 238 YAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGES 297
Query: 140 -YDLSSIRVVLSGAAPLGKELEDALRSRVPQAI---LGQGYGMTEAGPVLSMCLGFAKQP 195
L+S++++ G G L L +R+P I L Q +GM E G V L + +
Sbjct: 298 RAQLASLKLLQVG----GARLSATLAARIPAEIGCQLQQVFGMAE-GLVNYTRLDDSAEK 352
Query: 196 FPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
G + + E+ V D E G LP + G + RGP +
Sbjct: 353 IIHTQGY--PMCPDDEVWVADAE-GNPLPQGEVGRLMTRGPYTFR 394
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 74/171 (43%), Gaps = 16/171 (9%)
Query: 15 QIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLC 74
++PEV + D L S G+TGL K + TH I S+ + V+ +L + V L
Sbjct: 175 KLPEV--KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE----VCWLDHSTVYLA 228
Query: 75 VLPLFHIYSLNSV-LLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXK 133
LP H Y L+S +L L AG V+L LI+R +V+
Sbjct: 229 ALPXAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAXVWXD 288
Query: 134 NPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILG----QGYGMTE 180
DLSS++V+ G A E +R +A+ G Q +G E
Sbjct: 289 AASSRRDDLSSLQVLQVGGAKFSAEA-----ARRVKAVFGCTLQQVFGXAE 334
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 17 PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCV 75
P AI+P+DP + ++SGTTG PKG + TH + I + + VD + ++ D L V
Sbjct: 600 PATAIDPNDPAYIMYTSGTTGKPKGNITTHAN-IQGLVKHVD----YMAFSDQDTFLSV 653
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 87/217 (40%), Gaps = 17/217 (7%)
Query: 17 PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSL----ITSVAQQVDGENPNLYLTNGDVV 72
P ++ +DP+ L ++SG+TG PKGV + + ++ D +++ T GD+
Sbjct: 255 PCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIG 314
Query: 73 LCVLPLFHIYSLNSVLL--CSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXX 130
H Y + LL C+ G + ++I H+V+
Sbjct: 315 WIT---GHTYVVYGPLLYGCATLVFEGTPAYPNYS--RYWDIIDEHKVTQFYVAPTALRL 369
Query: 131 XXK--NPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILG--QGYGMTEAGPVLS 186
+ + + ++ L S+R + S P+ E+ + ++ + + Y TE+G L
Sbjct: 370 LKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLV 429
Query: 187 MCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASL 223
L A P K GS + V+DP TG L
Sbjct: 430 TPL--AGGVTPMKPGSASFPFFGIDAVVLDPNTGEEL 464
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/256 (20%), Positives = 99/256 (38%), Gaps = 40/256 (15%)
Query: 19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPL 78
+I+ +D L ++SG+T PKGV ++H +L+ ++ + + N + ++ LP
Sbjct: 162 TSIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSFHXN----DETIIFSWLPP 217
Query: 79 FHIYSLNSVLLCSLRAGAGVLLMQKFEI----GALLELIQRHRVSXXXXXXXXXXXXXKN 134
H L +L + G + F + L+ I +++ + K
Sbjct: 218 HHDXGLIGCILTPIYGGIQAIXXSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKR 277
Query: 135 ---PMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQG-----YGMTEAGPVLS 186
DLSS +GA P+ +E + + + YG+ EA +++
Sbjct: 278 IREEKKEGLDLSSWVTAFNGAEPVREETXEHFYQAFKEFGFRKEAFYPCYGLAEATLLVT 337
Query: 187 --------MCLGFAKQPF--------------PTKSGSCGTVVRNAELKVIDPETGASLP 224
L AK+ F K S G ++ E+K+IDP+T
Sbjct: 338 GGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQ--EVKIIDPDTLIPCD 395
Query: 225 HNQPGEICIRGPQIMK 240
+Q GEI ++ + K
Sbjct: 396 FDQVGEIWVQSNSVAK 411
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 68/170 (40%), Gaps = 21/170 (12%)
Query: 19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLI-TSVAQQVDGENPNLYLTNGDVVLCVLP 77
+ P+D + F+SG+TG PKGV+ H++L T + Q G P+ +V L P
Sbjct: 209 TGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQDYAGFGPD------EVFLQCSP 262
Query: 78 L-FHIYSLNSVLLCSLRAGAGVLLMQK-----FEIGALLELIQRHRVSXXXXXXXXXXXX 131
+ + + L L +L GA +L EIG EL+ RH V+
Sbjct: 263 VSWDAFGLE--LFGALLFGARCVLQSGQNPDPLEIG---ELVARHGVTMLQLSASLFNFL 317
Query: 132 XKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA 181
A +R ++G P R P LG GYG E+
Sbjct: 318 VDEVPEA---FEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAES 364
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 65/163 (39%), Gaps = 11/163 (6%)
Query: 21 IEPDDPVALPFSSGTTGLPKGVVLTHKSLI-TSVAQQVDGENPN-LYLTNGDVVLCVLPL 78
+ P+D + F+SG+TG PKGV+ H++L T + Q G P+ ++L V L
Sbjct: 211 VGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQDYAGFGPDEVFLQCSPVSWDAFGL 270
Query: 79 FHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVA 138
+L C L++G EIG EL+ RH V+ A
Sbjct: 271 ELFGALLFGARCVLQSGQN---PDPLEIG---ELVARHGVTMLQLSASLFNFLVDEVPEA 324
Query: 139 DYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA 181
+R ++G P R P LG GYG E+
Sbjct: 325 ---FEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAES 364
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 83/202 (41%), Gaps = 25/202 (12%)
Query: 7 VLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVA---QQVDGENPN 63
++ +A + PE A+ +DP+ + ++SG+TG PKGV+ T + A + V +P
Sbjct: 240 LIEKASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHP- 297
Query: 64 LYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKF----EIGALLELIQRHRVS 119
GD+ C + + + +L L GA L+ + + +++ +H+V+
Sbjct: 298 -----GDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVN 352
Query: 120 --XXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAI--LGQG 175
+ + D SS+R++ S P+ E + ++ + +
Sbjct: 353 ILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKCPVVDT 412
Query: 176 YGMTEAGPVLSMCLGFAKQPFP 197
+ TE G GF P P
Sbjct: 413 WWQTETG-------GFMITPLP 427
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 83/202 (41%), Gaps = 25/202 (12%)
Query: 7 VLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVA---QQVDGENPN 63
++ +A + PE A+ +DP+ + ++SG+TG PKGV+ T + A + V +P
Sbjct: 240 LIEKASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHP- 297
Query: 64 LYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKF----EIGALLELIQRHRVS 119
GD+ C + + + +L L GA L+ + + +++ +H+V+
Sbjct: 298 -----GDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVN 352
Query: 120 --XXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAI--LGQG 175
+ + D SS+R++ S P+ E + ++ + +
Sbjct: 353 ILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDT 412
Query: 176 YGMTEAGPVLSMCLGFAKQPFP 197
+ TE G GF P P
Sbjct: 413 WWQTETG-------GFMITPLP 427
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 83/202 (41%), Gaps = 25/202 (12%)
Query: 7 VLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVA---QQVDGENPN 63
++ +A + PE A+ +DP+ + ++SG+TG PKGV+ T + A + V +P
Sbjct: 240 LIEKASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHP- 297
Query: 64 LYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKF----EIGALLELIQRHRVS 119
GD+ C + + + +L L GA L+ + + +++ +H+V+
Sbjct: 298 -----GDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVN 352
Query: 120 --XXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAI--LGQG 175
+ + D SS+R++ S P+ E + ++ + +
Sbjct: 353 ILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDT 412
Query: 176 YGMTEAGPVLSMCLGFAKQPFP 197
+ TE G GF P P
Sbjct: 413 WWQTETG-------GFMITPLP 427
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 83/202 (41%), Gaps = 25/202 (12%)
Query: 7 VLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVA---QQVDGENPN 63
++ +A + PE A+ +DP+ + ++SG+TG PKGV+ T + A + V +P
Sbjct: 240 LIEKASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHP- 297
Query: 64 LYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKF----EIGALLELIQRHRVS 119
GD+ C + + + +L L GA L+ + + +++ +H+V+
Sbjct: 298 -----GDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVN 352
Query: 120 --XXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAI--LGQG 175
+ + D SS+R++ S P+ E + ++ + +
Sbjct: 353 ILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDT 412
Query: 176 YGMTEAGPVLSMCLGFAKQPFP 197
+ TE G GF P P
Sbjct: 413 WWQTETG-------GFMITPLP 427
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 83/202 (41%), Gaps = 25/202 (12%)
Query: 7 VLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVA---QQVDGENPN 63
++ +A + PE A+ +DP+ + ++SG+TG PKGV+ T + A + V +P
Sbjct: 240 LIEKASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHP- 297
Query: 64 LYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKF----EIGALLELIQRHRVS 119
GD+ C + + + +L L GA L+ + + +++ +H+V+
Sbjct: 298 -----GDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVN 352
Query: 120 --XXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAI--LGQG 175
+ + D SS+R++ S P+ E + ++ + +
Sbjct: 353 ILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDT 412
Query: 176 YGMTEAGPVLSMCLGFAKQPFP 197
+ TE G GF P P
Sbjct: 413 WWQTETG-------GFMITPLP 427
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 83/202 (41%), Gaps = 25/202 (12%)
Query: 7 VLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVA---QQVDGENPN 63
++ +A + PE A+ +DP+ + ++SG+TG PKGV+ T + A + V +P
Sbjct: 240 LIEKASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHP- 297
Query: 64 LYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKF----EIGALLELIQRHRVS 119
GD+ C + + + +L L GA L+ + + +++ +H+V+
Sbjct: 298 -----GDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVN 352
Query: 120 --XXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAI--LGQG 175
+ + D SS+R++ S P+ E + ++ + +
Sbjct: 353 ILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDT 412
Query: 176 YGMTEAGPVLSMCLGFAKQPFP 197
+ TE G GF P P
Sbjct: 413 WWQTETG-------GFMITPLP 427
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 83/202 (41%), Gaps = 25/202 (12%)
Query: 7 VLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVA---QQVDGENPN 63
++ +A + PE A+ +DP+ + ++SG+TG PKGV+ T + A + V +P
Sbjct: 240 LIEKASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHP- 297
Query: 64 LYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKF----EIGALLELIQRHRVS 119
GD+ C + + + +L L GA L+ + + +++ +H+V+
Sbjct: 298 -----GDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVN 352
Query: 120 --XXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAI--LGQG 175
+ + D SS+R++ S P+ E + ++ + +
Sbjct: 353 ILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDT 412
Query: 176 YGMTEAGPVLSMCLGFAKQPFP 197
+ TE G GF P P
Sbjct: 413 WWQTETG-------GFMITPLP 427
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 100/259 (38%), Gaps = 47/259 (18%)
Query: 8 LSEADEDQIPEV------AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGEN 61
LSE + ++ E+ +++ DD + F+SGTTG PKGV ++H +L++ + E+
Sbjct: 123 LSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMI--ED 180
Query: 62 PNLYLTNGDVVLCVLPLFHIYSLN-SVLLC--SLRAGAGVLLMQKFEIGALLELIQRHRV 118
+ +L P YS + SV+ +L G + + K EL+ +
Sbjct: 181 AAFDVPKQPQMLAQPP----YSFDLSVMYWAPTLALGGTLFALPK-------ELVADFKQ 229
Query: 119 SXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPL------GKELE----DALRSRVP 168
P AD + S + L G+EL L R P
Sbjct: 230 LFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFP 289
Query: 169 QAILGQGYGMTEAGPVLS-------MCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGA 221
A + YG TEA LS M + + P G ++ +ID E G
Sbjct: 290 SAKIINAYGPTEATVALSAIEITREMVDNYTRLP-------IGYPKPDSPTYIID-EDGK 341
Query: 222 SLPHNQPGEICIRGPQIMK 240
L + GEI + GP + K
Sbjct: 342 ELSSGEQGEIIVTGPAVSK 360
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 33.5 bits (75), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 97/269 (36%), Gaps = 56/269 (20%)
Query: 13 EDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGD-- 70
ED+ P A L ++SG+T P GVV +H+++ + Q G Y + D
Sbjct: 179 EDEYPSTAY-------LQYTSGSTRTPAGVVXSHQNVRVNFEQLXSG-----YFADTDGI 226
Query: 71 -----VVLCVLPLFHIYSLNSVLLCSLRAG------AGVLLMQKFEIGALLELIQRHRVS 119
++ LP +H L + + G + V +Q+ L H S
Sbjct: 227 PPPNSALVSWLPFYHDXGLVIGICAPILGGYPAVLTSPVSFLQRPARWXHLXASDFHAFS 286
Query: 120 XX-XXXXXXXXXXXKNPMVADYDLSSIRVVLSG-----AAPLGKELEDALRSRVPQAILG 173
+ A DL +I +LSG AA + + + R + + ++
Sbjct: 287 AAPNFAFELAARRTTDDDXAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIR 346
Query: 174 QGYGMTEAGPVL-----------------SMCLGFAKQPFPTKSGSCGTVV-----RNAE 211
YG+ EA + S+ G AK P G +++ R+
Sbjct: 347 PSYGLAEATVYVATSKPGQPPETVDFDTESLSAGHAK---PCAGGGATSLISYXLPRSPI 403
Query: 212 LKVIDPETGASLPHNQPGEICIRGPQIMK 240
++++D +T P GEI + G +
Sbjct: 404 VRIVDSDTCIECPDGTVGEIWVHGDNVAN 432
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 87/213 (40%), Gaps = 9/213 (4%)
Query: 31 FSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLC 90
++SG+TG PKGV ++ +L S + + P ++ G + L P S+ + C
Sbjct: 150 YTSGSTGNPKGVQISAANL-QSFTDWICADFP---VSGGKIFLNQAPFSFDLSVMDLYPC 205
Query: 91 SLRAGAGVLLMQKFEIG---ALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRV 147
L++G + + K + L E +++ ++ +P + L
Sbjct: 206 -LQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADT 264
Query: 148 VLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVV 207
+ L + AL R P+A + YG TEA ++ ++S G
Sbjct: 265 FMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAK 324
Query: 208 RNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240
+ + ++D E G LP + GEI I GP + +
Sbjct: 325 PDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSR 356
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 54/267 (20%), Positives = 99/267 (37%), Gaps = 56/267 (20%)
Query: 13 EDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGD-- 70
ED+ P A L ++SG+T P GVV++H+++ + Q + G Y + D
Sbjct: 179 EDEYPSTAY-------LQYTSGSTRTPAGVVMSHQNVRVNFEQLMSG-----YFADTDGI 226
Query: 71 -----VVLCVLPLFHIYSLNSVLLCSLRAG------AGVLLMQKFEIGALLELIQRHRVS 119
++ LP +H L + + G + V +Q+ L H S
Sbjct: 227 PPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHAFS 286
Query: 120 XX-XXXXXXXXXXXKNPMVADYDLSSIRVVLSG-----AAPLGKELEDALRSRVPQAILG 173
+ +A DL +I +LSG AA + + + R + + ++
Sbjct: 287 AAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIR 346
Query: 174 QGYGMTEAGPVL-----------------SMCLGFAKQPFPTKSGSCGTVV-----RNAE 211
Y + EA + S+ G AK P G +++ R+
Sbjct: 347 PSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAK---PCAGGGATSLISYMLPRSPI 403
Query: 212 LKVIDPETGASLPHNQPGEICIRGPQI 238
++++D +T P GEI + G +
Sbjct: 404 VRIVDSDTCIECPDGTVGEIWVHGDNV 430
>pdb|2Y4N|A Chain A, Paak1 In Complex With Phenylacetyl Adenylate
pdb|2Y4N|B Chain B, Paak1 In Complex With Phenylacetyl Adenylate
Length = 437
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 143 SSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGS 202
SS+R+ + GA P ++ A+ R+ + YG++E M G A + TK G
Sbjct: 210 SSLRIGIFGAEPWTNDMRVAIEQRMGIDAV-DIYGLSEV-----MGPGVASECVETKDGP 263
Query: 203 CGTVVRNAEL-KVIDPETGASLPHNQPGEICI 233
T+ + ++IDPETG LP + GE+
Sbjct: 264 --TIWEDHFYPEIIDPETGEVLPDGELGELVF 293
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 93/215 (43%), Gaps = 26/215 (12%)
Query: 28 ALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSV 87
A+ F+SGT+GLPK ++ SL + ++D L + D++ + I ++
Sbjct: 210 AIYFTSGTSGLPKMAEHSYSSL--GLKAKMDAGWTGLQAS--DIMWTISDTGWILNILCS 265
Query: 88 LL--CSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSI 145
L+ +L A V L+ KF+ +L+ + + + M+ DLSS
Sbjct: 266 LMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYR------MLLQQDLSSY 319
Query: 146 RV------VLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTK 199
+ V G + L + LE+ R++ I + YG TE G C+ + K
Sbjct: 320 KFPHLQNCVTVGESLLPETLEN-WRAQTGLDIR-ESYGQTETGLT---CM--VSKTMKIK 372
Query: 200 SGSCGTVVRNAELKVIDPETGASLPHNQPGEICIR 234
G GT ++++ID + G LP G+I IR
Sbjct: 373 PGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIR 406
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 93/215 (43%), Gaps = 26/215 (12%)
Query: 28 ALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSV 87
A+ F+SGT+GLPK ++ SL + ++D L + D++ + I ++
Sbjct: 210 AIYFTSGTSGLPKMAEHSYSSL--GLKAKMDAGWTGLQAS--DIMWTISDTGWILNILCS 265
Query: 88 LL--CSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSI 145
L+ +L A V L+ KF+ +L+ + + + M+ DLSS
Sbjct: 266 LMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYR------MLLQQDLSSY 319
Query: 146 RV------VLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTK 199
+ V G + L + LE+ R++ I + YG TE G C+ + K
Sbjct: 320 KFPHLQNCVTVGESLLPETLEN-WRAQTGLDIR-ESYGQTETGLT---CM--VSKTMKIK 372
Query: 200 SGSCGTVVRNAELKVIDPETGASLPHNQPGEICIR 234
G GT ++++ID + G LP G+I IR
Sbjct: 373 PGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIR 406
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 147 VVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA 181
V ++G + G+++ D ++ V Q ILG GY EA
Sbjct: 93 VTINGVSITGQQIADVTQTSVDQGILGIGYTSNEA 127
>pdb|2Y27|A Chain A, Crystal Structure Of Paak1 In Complex With Atp From
Burkholderia Cenocepacia
pdb|2Y27|B Chain B, Crystal Structure Of Paak1 In Complex With Atp From
Burkholderia Cenocepacia
Length = 437
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 143 SSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA-GPVLSMCLGFAKQPFPTKSG 201
SS+R+ + GA P + A+ R + YG++E GP G A + TK G
Sbjct: 210 SSLRIGIFGAEPWTNDXRVAIEQRXGIDAV-DIYGLSEVXGP------GVASECVETKDG 262
Query: 202 SCGTVVRNAEL-KVIDPETGASLPHNQPGEICI 233
T+ + ++IDPETG LP + GE+
Sbjct: 263 P--TIWEDHFYPEIIDPETGEVLPDGELGELVF 293
>pdb|2OER|A Chain A, Probable Transcriptional Regulator From Pseudomonas
Aeruginosa
pdb|2OER|B Chain B, Probable Transcriptional Regulator From Pseudomonas
Aeruginosa
Length = 214
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 143 SSIRVVLSGAAPLGKELEDALR-----SRVPQAILGQGY------GMTEAGPVLSMCLGF 191
++IRV LS AAPL ++ ++A +RV QA L + + AG +L+ LG
Sbjct: 117 AAIRVALSDAAPLYRDADEAREVKAEGARVFQAFLREALPEVAEAERSLAGDLLTTTLGA 176
Query: 192 AKQPFPTKSGSCGTVVRNAE 211
+ F + S + R AE
Sbjct: 177 VGKQFSEQPRSEAEIERYAE 196
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 24 DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYS 83
+D + ++SGTTG PKGV + H +++ +A P+++ +GD LFH S
Sbjct: 175 EDMAYVIYTSGTTGNPKGVPVRHANVLALLAGA-----PSVFDFSGDDRWL---LFHSLS 226
Query: 84 LN 85
+
Sbjct: 227 FD 228
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 25 DPVALPFSSGTTGLPKGVVLTHKSL 49
D + ++SGTTG PKG +L HK +
Sbjct: 183 DLAYVIYTSGTTGNPKGTMLEHKGI 207
>pdb|2Y4O|A Chain A, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
pdb|2Y4O|B Chain B, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
Length = 443
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 143 SSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGS 202
SS+++ + GA P + L + + +RV L YG++E M G A + TK G
Sbjct: 212 SSLKIGIFGAEPWTQALRNEVETRVGIDAL-DIYGLSEV-----MGPGVACECVETKDGP 265
Query: 203 CGTVVRNAEL--KVIDPETGASLPHNQPGEICI 233
V+ ++IDP TG LP GE+
Sbjct: 266 ---VIWEDHFYPEIIDPVTGEVLPDGSQGELVF 295
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 24 DDPVALPFSSGTTGLPKGVVLTHKSL 49
D + FSSGTTG PK + TH +
Sbjct: 164 DQIAYINFSSGTTGRPKAIACTHAGI 189
>pdb|1XKQ|A Chain A, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE OF
Unknown Function From Caenorhabditis Elegans With
Cofactor
pdb|1XKQ|B Chain B, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE OF
Unknown Function From Caenorhabditis Elegans With
Cofactor
pdb|1XKQ|C Chain C, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE OF
Unknown Function From Caenorhabditis Elegans With
Cofactor
pdb|1XKQ|D Chain D, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE OF
Unknown Function From Caenorhabditis Elegans With
Cofactor
Length = 280
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 28 ALPFSSGTTGLPKGVVLTHKSL---ITSVAQQVDGENPNLYLTNGDVV 72
A+P + GTTG +G+ + HK+L + +V + P+L + G++V
Sbjct: 97 AIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIV 144
>pdb|3ED6|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
pdb|3ED6|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
pdb|3FG0|A Chain A, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
pdb|3FG0|B Chain B, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
pdb|3FG0|C Chain C, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
pdb|3FG0|D Chain D, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
pdb|3FG0|E Chain E, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
pdb|3FG0|F Chain F, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
pdb|3FG0|G Chain G, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
pdb|3FG0|H Chain H, 1.85 Angstrom Resolution Crystal Structure Of Betaine
Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
(Idp00699) In Complex With Nad+
Length = 520
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 50 ITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ----KFE 105
+T++A ++ G+NPN+ + D L V + ++ +CS AG+ +L+ KFE
Sbjct: 273 VTNIALELGGKNPNIIFDDADFELAVDQALNGGYFHAGQVCS--AGSRILVQNSIKDKFE 330
Query: 106 IGALLELIQR 115
AL++ +++
Sbjct: 331 -QALIDRVKK 339
>pdb|2C8I|E Chain E, Complex Of Echovirus Type 12 With Domains 1, 2, 3 And 4
Of Its Receptor Decay Accelerating Factor (Cd55) By
Cryo Electron Microscopy At 16 A
Length = 316
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 2 CLHFTVLSEADE--DQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHK 47
CL + S+ +E ++ + + PD P A P G T P+ V+T+K
Sbjct: 48 CLKGSQWSDIEEFCNRSQDCGLPPDVPNAQPALEGRTSFPEDTVITYK 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,782,321
Number of Sequences: 62578
Number of extensions: 259283
Number of successful extensions: 942
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 826
Number of HSP's gapped (non-prelim): 79
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)