Query 039504
Match_columns 240
No_of_seqs 130 out of 1219
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 17:46:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039504.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039504hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 5E-43 1.7E-47 293.1 22.2 237 4-240 158-394 (536)
2 2d1s_A Luciferase, luciferin 4 100.0 2.4E-40 8.1E-45 277.5 24.5 210 24-240 192-401 (548)
3 3tsy_A Fusion protein 4-coumar 100.0 3.1E-40 1.1E-44 293.1 20.9 224 17-240 218-441 (979)
4 3rix_A Luciferase, luciferin 4 100.0 1.5E-39 5E-44 273.0 22.9 212 22-240 188-399 (550)
5 4fuq_A Malonyl COA synthetase; 100.0 1.4E-39 4.8E-44 270.3 20.5 212 17-240 148-359 (503)
6 3e7w_A D-alanine--poly(phospho 100.0 1.7E-39 6E-44 270.3 19.6 231 4-240 122-356 (511)
7 2v7b_A Benzoate-coenzyme A lig 100.0 1.3E-38 4.3E-43 266.2 22.5 226 4-240 163-390 (529)
8 1pg4_A Acetyl-COA synthetase; 100.0 4.9E-39 1.7E-43 274.3 19.6 229 4-240 236-475 (652)
9 3fce_A D-alanine--poly(phospho 100.0 3.4E-39 1.2E-43 268.6 16.8 217 18-240 138-357 (512)
10 3etc_A AMP-binding protein; ad 100.0 3.6E-38 1.2E-42 265.7 22.2 225 3-239 200-435 (580)
11 3c5e_A Acyl-coenzyme A synthet 100.0 4.7E-38 1.6E-42 264.6 22.3 223 4-240 186-417 (570)
12 3g7s_A Long-chain-fatty-acid-- 100.0 5E-39 1.7E-43 269.6 16.0 228 4-240 159-395 (549)
13 1mdb_A 2,3-dihydroxybenzoate-A 100.0 3.5E-39 1.2E-43 270.0 14.8 212 19-240 177-390 (539)
14 3t5a_A Long-chain-fatty-acid-- 100.0 2.9E-39 9.9E-44 267.1 13.7 218 17-240 176-432 (480)
15 1ry2_A Acetyl-coenzyme A synth 100.0 3.3E-38 1.1E-42 269.5 18.6 232 4-240 242-484 (663)
16 3o83_A Peptide arylation enzym 100.0 1.7E-38 5.7E-43 266.1 15.3 212 19-240 186-399 (544)
17 3hgu_A EHPF; phenazine, antibi 100.0 1.8E-38 6.2E-43 254.1 14.0 204 20-236 87-321 (369)
18 3l8c_A D-alanine--poly(phospho 100.0 9.3E-38 3.2E-42 260.5 18.6 220 17-240 138-360 (521)
19 3r44_A Fatty acyl COA syntheta 100.0 4.4E-38 1.5E-42 262.1 16.2 223 6-240 152-374 (517)
20 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.9E-37 6.4E-42 257.7 18.9 208 19-240 148-363 (504)
21 3kxw_A Saframycin MX1 syntheta 100.0 4.5E-38 1.5E-42 266.1 14.9 218 17-240 160-411 (590)
22 4dg8_A PA1221; ANL superfamily 100.0 6.3E-37 2.2E-41 259.6 19.0 212 19-240 159-372 (620)
23 4gr5_A Non-ribosomal peptide s 100.0 8.3E-37 2.8E-41 257.2 19.5 212 18-240 208-421 (570)
24 1v25_A Long-chain-fatty-acid-C 100.0 5.8E-37 2E-41 256.7 18.5 216 19-240 171-395 (541)
25 3ivr_A Putative long-chain-fat 100.0 3.4E-37 1.1E-41 256.5 16.0 207 17-240 153-359 (509)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 2.1E-37 7.3E-42 257.2 14.6 211 18-240 149-365 (505)
27 3rg2_A Enterobactin synthase c 100.0 7.3E-37 2.5E-41 259.7 17.1 223 8-240 168-394 (617)
28 3qov_A Phenylacetate-coenzyme 100.0 1E-36 3.5E-41 249.0 14.1 210 19-237 80-292 (436)
29 3gqw_A Fatty acid AMP ligase; 100.0 7.5E-36 2.6E-40 251.8 19.2 219 18-240 170-423 (576)
30 1amu_A GRSA, gramicidin synthe 100.0 7.6E-36 2.6E-40 250.8 17.9 204 20-240 178-384 (563)
31 3ipl_A 2-succinylbenzoate--COA 100.0 6.8E-36 2.3E-40 248.2 16.4 203 19-240 158-360 (501)
32 2y27_A Phenylacetate-coenzyme 100.0 2.1E-35 7E-40 241.4 15.6 210 18-237 84-297 (437)
33 2y4o_A Phenylacetate-coenzyme 100.0 3.1E-35 1.1E-39 240.7 13.9 209 19-237 87-299 (443)
34 2vsq_A Surfactin synthetase su 100.0 1.5E-34 5.2E-39 262.7 19.4 212 18-240 601-815 (1304)
35 3ite_A SIDN siderophore synthe 100.0 1.7E-34 5.7E-39 242.9 16.3 213 18-240 169-386 (562)
36 4gs5_A Acyl-COA synthetase (AM 100.0 4.6E-33 1.6E-37 221.5 11.4 188 24-238 37-225 (358)
37 4eql_A 4-substituted benzoates 97.3 0.00033 1.1E-08 58.5 5.8 31 21-51 90-121 (581)
38 4b2g_A GH3-1 auxin conjugating 97.1 0.0003 1E-08 58.9 3.8 32 20-51 95-127 (609)
39 3ni2_A 4-coumarate:COA ligase; 93.1 0.43 1.5E-05 39.6 8.5 98 22-129 35-133 (536)
40 1v25_A Long-chain-fatty-acid-C 92.8 0.79 2.7E-05 38.1 9.7 101 23-131 32-133 (541)
41 3g7s_A Long-chain-fatty-acid-- 92.8 0.78 2.7E-05 38.2 9.7 104 23-131 33-138 (549)
42 3ivr_A Putative long-chain-fat 92.8 0.53 1.8E-05 38.7 8.6 86 42-130 30-116 (509)
43 3rix_A Luciferase, luciferin 4 91.9 0.27 9.2E-06 41.0 5.8 88 42-132 49-137 (550)
44 3t5a_A Long-chain-fatty-acid-- 91.9 1.2 4.1E-05 36.2 9.6 106 22-133 37-148 (480)
45 3c5e_A Acyl-coenzyme A synthet 91.7 0.71 2.4E-05 38.7 8.1 104 22-131 56-160 (570)
46 1t5h_X 4-chlorobenzoyl COA lig 91.5 1.1 3.7E-05 36.8 9.0 87 42-131 28-117 (504)
47 1ry2_A Acetyl-coenzyme A synth 91.1 1.2 4E-05 38.1 9.0 100 22-126 95-195 (663)
48 1amu_A GRSA, gramicidin synthe 90.7 1.3 4.4E-05 37.0 8.8 86 42-130 63-149 (563)
49 2v7b_A Benzoate-coenzyme A lig 90.6 0.66 2.3E-05 38.3 6.9 85 43-130 48-133 (529)
50 3etc_A AMP-binding protein; ad 90.5 1.3 4.3E-05 37.2 8.6 97 22-125 69-166 (580)
51 3tsy_A Fusion protein 4-coumar 90.1 0.79 2.7E-05 41.1 7.3 96 23-128 75-171 (979)
52 1pg4_A Acetyl-COA synthetase; 89.7 1.7 5.7E-05 37.1 8.8 97 23-125 90-187 (652)
53 4gr5_A Non-ribosomal peptide s 89.4 1.7 5.8E-05 36.3 8.5 81 43-126 100-181 (570)
54 2d1s_A Luciferase, luciferin 4 89.4 0.68 2.3E-05 38.5 6.0 87 42-131 51-138 (548)
55 3r44_A Fatty acyl COA syntheta 89.4 1.3 4.4E-05 36.5 7.7 96 23-128 30-126 (517)
56 3ezx_A MMCP 1, monomethylamine 89.2 4.3 0.00015 29.2 9.4 94 68-163 92-195 (215)
57 4epl_A Jasmonic acid-amido syn 88.5 0.14 4.8E-06 42.9 1.2 32 20-51 94-126 (581)
58 3o83_A Peptide arylation enzym 88.2 1.8 6.3E-05 35.9 7.9 92 22-125 43-135 (544)
59 4fuq_A Malonyl COA synthetase; 88.2 1.4 4.7E-05 36.2 7.0 82 43-127 28-110 (503)
60 3kxw_A Saframycin MX1 syntheta 87.4 3.2 0.00011 34.7 8.9 102 23-132 25-130 (590)
61 3l8c_A D-alanine--poly(phospho 84.9 1.7 5.7E-05 35.8 5.9 80 43-125 29-109 (521)
62 3fce_A D-alanine--poly(phospho 84.7 2.7 9.3E-05 34.5 7.0 79 43-124 26-105 (512)
63 3e7w_A D-alanine--poly(phospho 84.4 2.9 9.9E-05 34.3 7.1 81 42-124 25-106 (511)
64 3gqw_A Fatty acid AMP ligase; 83.7 3.4 0.00011 34.4 7.3 87 42-131 48-142 (576)
65 1mdb_A 2,3-dihydroxybenzoate-A 82.9 2.4 8.3E-05 35.1 6.1 81 42-125 49-130 (539)
66 3ipl_A 2-succinylbenzoate--COA 79.8 6.1 0.00021 32.2 7.4 78 43-126 26-104 (501)
67 3rg2_A Enterobactin synthase c 76.7 5.8 0.0002 33.5 6.5 91 23-125 39-130 (617)
68 3ite_A SIDN siderophore synthe 76.6 6.6 0.00023 32.6 6.8 99 22-125 33-134 (562)
69 4dg8_A PA1221; ANL superfamily 74.8 7.3 0.00025 33.0 6.6 79 43-124 52-131 (620)
70 3nyq_A Malonyl-COA ligase; A/B 70.7 18 0.00061 29.6 7.9 77 42-126 47-124 (505)
71 4epl_A Jasmonic acid-amido syn 66.4 5.9 0.0002 33.3 4.1 70 160-236 319-401 (581)
72 2vsq_A Surfactin synthetase su 64.4 22 0.00077 33.1 7.9 82 43-127 489-571 (1304)
73 2i2x_B MTAC, methyltransferase 63.2 17 0.00057 26.9 5.7 87 69-159 124-218 (258)
74 1y80_A Predicted cobalamin bin 61.1 41 0.0014 23.8 7.5 90 69-160 89-186 (210)
75 3bul_A Methionine synthase; tr 48.6 65 0.0022 27.1 7.3 89 68-160 98-194 (579)
76 2yxb_A Coenzyme B12-dependent 37.1 94 0.0032 20.9 5.9 95 68-166 18-120 (161)
77 3n9r_A Fructose-bisphosphate a 36.4 18 0.0006 27.7 2.0 68 104-181 155-239 (307)
78 1rvg_A Fructose-1,6-bisphospha 36.3 18 0.0006 27.6 2.0 68 104-181 153-237 (305)
79 2isw_A Putative fructose-1,6-b 34.0 21 0.00071 27.5 2.1 75 104-180 153-238 (323)
80 1ccw_A Protein (glutamate muta 33.7 96 0.0033 20.1 5.2 56 70-125 5-62 (137)
81 1uhe_A Aspartate 1-decarboxyla 32.4 24 0.00082 21.7 1.8 31 207-237 14-49 (97)
82 1vc3_B L-aspartate-alpha-decar 30.2 55 0.0019 20.0 3.1 31 207-237 15-51 (96)
83 2c45_A Aspartate 1-decarboxyla 22.8 99 0.0034 20.3 3.4 32 206-237 38-75 (139)
84 3tcm_A Alanine aminotransferas 22.7 1.9E+02 0.0066 23.4 6.2 44 67-115 180-230 (500)
85 3e8v_A Possible transglutamina 20.2 60 0.002 19.2 1.9 15 210-225 3-17 (82)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=5e-43 Score=293.12 Aligned_cols=237 Identities=70% Similarity=1.183 Sum_probs=205.8
Q ss_pred chhhHhhcCCCCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhh
Q 039504 4 HFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYS 83 (240)
Q Consensus 4 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 83 (240)
.++++.+......+....+++|+++|+|||||||.||+|.++|+++...+..........+.+.++|++++.+|++|.++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 237 (536)
T 3ni2_A 158 HFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYA 237 (536)
T ss_dssp ETHHHHTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHH
T ss_pred CHHHHhhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHH
Confidence 45555554444445556788999999999999999999999999998887766554444557889999999999999999
Q ss_pred hHHHHHHHhhcCceEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHH
Q 039504 84 LNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDAL 163 (240)
Q Consensus 84 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~ 163 (240)
+...++.++..|+++++.+++++..+++.++++++|++.++|+++..+.+........++++|.+++||+++++++.+++
T Consensus 238 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~ 317 (536)
T 3ni2_A 238 LNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTV 317 (536)
T ss_dssp HHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHH
Confidence 97678899999999999999999999999999999999999999999999887777788999999999999999999999
Q ss_pred HHhCCCCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504 164 RSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240 (240)
Q Consensus 164 ~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~ 240 (240)
++.|+++++++.||+||++.++..+............+++|+|+++++++|+|++++++++.|+.|||+|+||++++
T Consensus 318 ~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~ 394 (536)
T 3ni2_A 318 RAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMK 394 (536)
T ss_dssp HHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCS
T ss_pred HHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccch
Confidence 99998999999999999987765543333334455678999999999999999999999999999999999999874
No 2
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=2.4e-40 Score=277.47 Aligned_cols=210 Identities=34% Similarity=0.546 Sum_probs=184.9
Q ss_pred CCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC
Q 039504 24 DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK 103 (240)
Q Consensus 24 ~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~ 103 (240)
+|+++++|||||||.||+|.++|+++............ .+++.++|++++.+|++|.+++...++.++ .|+++++.++
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~ 269 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY-GNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTK 269 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT-SCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCC
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh-ccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCC
Confidence 89999999999999999999999999888776654321 246789999999999999999875567777 9999999989
Q ss_pred CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccccccccc
Q 039504 104 FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGP 183 (240)
Q Consensus 104 ~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~ 183 (240)
++++.+++.++++++|++.++|++++.|.+........++++|.+++||+++++++.+++++.|+++++++.||+||++.
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~ 349 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTS 349 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSS
T ss_pred CCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccc
Confidence 99999999999999999999999999999877665667889999999999999999999999998889999999999987
Q ss_pred chhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504 184 VLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240 (240)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~ 240 (240)
++..+. ......+++|+|.|+++++|+|++++++++.|+.|||+|+||.+++
T Consensus 350 ~~~~~~-----~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~ 401 (548)
T 2d1s_A 350 AIIITP-----EGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMK 401 (548)
T ss_dssp EEEECC-----TTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCS
T ss_pred eeeecC-----cccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhh
Confidence 655431 1234567899999999999999888999999999999999999874
No 3
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=3.1e-40 Score=293.08 Aligned_cols=224 Identities=73% Similarity=1.193 Sum_probs=198.6
Q ss_pred CCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCc
Q 039504 17 PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGA 96 (240)
Q Consensus 17 ~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~ 96 (240)
+.....++|+++|+|||||||.||+|.++|+++...+..........+.+.++|++++.+|++|.+++...++.++..|+
T Consensus 218 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~ 297 (979)
T 3tsy_A 218 DSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGA 297 (979)
T ss_dssp CCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTC
T ss_pred CcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCc
Confidence 34457789999999999999999999999999998877665544445678899999999999999999767889999999
Q ss_pred eEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccc
Q 039504 97 GVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGY 176 (240)
Q Consensus 97 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y 176 (240)
++++.+++++..+++.++++++|++.++|+++..|.+........++++|.+++||+++++++.+++.+.|+++++++.|
T Consensus 298 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~Y 377 (979)
T 3tsy_A 298 AILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGY 377 (979)
T ss_dssp EEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECE
T ss_pred EEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeee
Confidence 99999999999999999999999999999999999998777777889999999999999999999999999999999999
Q ss_pred cccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504 177 GMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240 (240)
Q Consensus 177 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~ 240 (240)
|+||++.++..+............+++|+|+++++++|+|++++++++.|++|||+|+||.+++
T Consensus 378 G~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~ 441 (979)
T 3tsy_A 378 GMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMK 441 (979)
T ss_dssp ECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCS
T ss_pred chhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccc
Confidence 9999987665543333333445678899999999999999999999999999999999999874
No 4
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.5e-39 Score=272.95 Aligned_cols=212 Identities=35% Similarity=0.526 Sum_probs=181.8
Q ss_pred CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504 22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM 101 (240)
Q Consensus 22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 101 (240)
.++|+++|+|||||||.||+|.++|.++............ ..++.++|++++.+|++|.+++. ..+.++..|+++++.
T Consensus 188 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~g~~-~~~~~l~~G~~~~~~ 265 (550)
T 3rix_A 188 RDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF-GNQIIPDTAILSVVPFHHGFGMF-TTLGYLICGFRVVLM 265 (550)
T ss_dssp TTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTT-SCCCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCEEEEC
T ss_pred CCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhc-cccCCCCcEEEEechHHHHHHHH-HHHHHHHcCCEEEEe
Confidence 3578999999999999999999999999887766554321 24678999999999999999987 577889999999999
Q ss_pred cCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccccccc
Q 039504 102 QKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA 181 (240)
Q Consensus 102 ~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~ 181 (240)
+++++..+++.++++++|++.++|++++.|.+........++++|.+++||+++++++.+++++.|+...+++.||+||+
T Consensus 266 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~ 345 (550)
T 3rix_A 266 YRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTET 345 (550)
T ss_dssp SSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGG
T ss_pred CCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCcc
Confidence 99999999999999999999999999999999877777788999999999999999999999999955569999999999
Q ss_pred ccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504 182 GPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240 (240)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~ 240 (240)
+..+..+. ......+++|+|.|+++++|+|++++++++.|+.|||+|+||++++
T Consensus 346 ~~~~~~~~-----~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~ 399 (550)
T 3rix_A 346 TSAILITP-----EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMS 399 (550)
T ss_dssp SSEEEECC-----TTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCS
T ss_pred ccceecCC-----CCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcch
Confidence 87765542 2234568899999999999999989999999999999999999874
No 5
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.4e-39 Score=270.29 Aligned_cols=212 Identities=29% Similarity=0.459 Sum_probs=186.1
Q ss_pred CCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCc
Q 039504 17 PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGA 96 (240)
Q Consensus 17 ~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~ 96 (240)
......++|+++|+|||||||.||+|.++|.++......... .+++.++|+++..+|++|.+++....+.++..|+
T Consensus 148 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~ 223 (503)
T 4fuq_A 148 ATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVD----YWRFTPDDVLIHALPIYHTHGLFVASNVTLFARG 223 (503)
T ss_dssp CCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTC
T ss_pred CcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHH----HhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCC
Confidence 344667899999999999999999999999999988877666 4567999999999999999998756788899999
Q ss_pred eEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccc
Q 039504 97 GVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGY 176 (240)
Q Consensus 97 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y 176 (240)
++++.+.+++..+++.++ ++|++.++|+++..+.+........++++|.+++||+++++++.+++.+.+ +.++++.|
T Consensus 224 ~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~Y 300 (503)
T 4fuq_A 224 SMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERY 300 (503)
T ss_dssp EEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECC
T ss_pred EEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceE
Confidence 999999999999999998 899999999999999998777777788999999999999999999999998 78999999
Q ss_pred cccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504 177 GMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240 (240)
Q Consensus 177 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~ 240 (240)
|+||++..+... .......+++|+|+|+++++|+|+++++++|.|+.|||+|+||++++
T Consensus 301 G~TE~~~~~~~~-----~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~ 359 (503)
T 4fuq_A 301 GMTETNMNTSNP-----YDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFK 359 (503)
T ss_dssp EETTTEECBCCC-----SSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCC
T ss_pred cccccCcccccC-----CCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhh
Confidence 999998654322 22344567899999999999999999999999999999999999874
No 6
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=1.7e-39 Score=270.29 Aligned_cols=231 Identities=22% Similarity=0.280 Sum_probs=193.7
Q ss_pred chhhHhhcCCCC-CCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhh
Q 039504 4 HFTVLSEADEDQ-IPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIY 82 (240)
Q Consensus 4 ~~~~l~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~ 82 (240)
.++++....... .......++|+++|+|||||||.||+|.++|.++......... .+++.++|+++..+|++|..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~ 197 (511)
T 3e7w_A 122 SAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICA----DFPVSGGKIFLNQAPFSFDL 197 (511)
T ss_dssp EHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHH----HSTTTTTCEEEECSCTTSTH
T ss_pred cHhhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHH----hcCCCccceEEEeCCccHHH
Confidence 344554433222 2234567899999999999999999999999999988877665 44678999999999999998
Q ss_pred hhHHHHHHHhhcCceEEEccC---CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHH
Q 039504 83 SLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKEL 159 (240)
Q Consensus 83 g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~ 159 (240)
++. .++.++..|+++++.+. +++..+++.++++++|++.++|++++.+..........++++|.++++|+++++++
T Consensus 198 ~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~ 276 (511)
T 3e7w_A 198 SVM-DLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSV 276 (511)
T ss_dssp HHH-HHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHH
T ss_pred HHH-HHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHH
Confidence 876 68889999999999875 78999999999999999999999999999887766777889999999999999999
Q ss_pred HHHHHHhCCCCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCC
Q 039504 160 EDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIM 239 (240)
Q Consensus 160 ~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~ 239 (240)
.+++.+.|+++++++.||+||++..+..+.............++|+|.|+++++|+| +++++++.|+.|||+|+||.++
T Consensus 277 ~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~ 355 (511)
T 3e7w_A 277 AKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVS 355 (511)
T ss_dssp HHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSC
T ss_pred HHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccC
Confidence 999999998999999999999987665432111111223456799999999999999 6699999999999999999987
Q ss_pred C
Q 039504 240 K 240 (240)
Q Consensus 240 ~ 240 (240)
+
T Consensus 356 ~ 356 (511)
T 3e7w_A 356 R 356 (511)
T ss_dssp C
T ss_pred h
Confidence 4
No 7
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1.3e-38 Score=266.19 Aligned_cols=226 Identities=27% Similarity=0.370 Sum_probs=181.3
Q ss_pred chhhHhhcCCCCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHH-HHHHHhhhcCCCCCccccCCcEEEEecchHHhh
Q 039504 4 HFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSL-ITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIY 82 (240)
Q Consensus 4 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l-~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~ 82 (240)
.++++.+...........+++|+++++|||||||.||+|.++|.++ ......... .+++.++|+++..+|++|.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~ 238 (529)
T 2v7b_A 163 LFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKP----ILGIAENDVVFSAAKLFFAY 238 (529)
T ss_dssp BHHHHHHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCC----CCCCCTTCEEEESSCTTSHH
T ss_pred chhhhhccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhh----ccCCCCCcEEEEeecHHHHH
Confidence 3555555333333344567899999999999999999999999998 444443332 45788999999999999999
Q ss_pred hhHHHHHHHhhcCceEEEc-cCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHH
Q 039504 83 SLNSVLLCSLRAGAGVLLM-QKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELED 161 (240)
Q Consensus 83 g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~ 161 (240)
++...++.++..|+++++. +.+++..+++.++++++|++.++|+++..+.+..........++|.+++||+++++++.+
T Consensus 239 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~ 318 (529)
T 2v7b_A 239 GLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGE 318 (529)
T ss_dssp HHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHH
T ss_pred HHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHH
Confidence 9876678899999999987 578999999999999999999999999999887544332134799999999999999999
Q ss_pred HHHHhCCCCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504 162 ALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240 (240)
Q Consensus 162 ~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~ 240 (240)
++++.| ++++++.||+||++.++..+. ......+++|+|.++++++|+| ++++++|.|+.|||+|+||.+++
T Consensus 319 ~~~~~~-g~~i~~~YG~TE~~~~~~~~~-----~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~ 390 (529)
T 2v7b_A 319 RFTAHF-GCEILDGIGSTEMLHIFLSNR-----AGAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAV 390 (529)
T ss_dssp HHHHHH-SCCEEEEEECTTTSSEEEECC-----TTCCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCC
T ss_pred HHHHHh-CCceeeeEchhhcCceeeccc-----cCCCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCccc
Confidence 999998 899999999999976554331 1124567899999999999999 67999999999999999999874
No 8
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=4.9e-39 Score=274.26 Aligned_cols=229 Identities=21% Similarity=0.295 Sum_probs=188.4
Q ss_pred chhhHhhcCCCCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHh-hhcCCCCCccccCCcEEEEecchHHhh
Q 039504 4 HFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQ-QVDGENPNLYLTNGDVVLCVLPLFHIY 82 (240)
Q Consensus 4 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~-~~~~~~~~~~~~~~d~~l~~~p~~~~~ 82 (240)
.|+++.+..........++++|+++|+|||||||.||+|.++|.++...... ... .+++.++|++++.+|++|+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~ 311 (652)
T 1pg4_A 236 WWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKY----VFDYHPGDIYWCTADVGWVT 311 (652)
T ss_dssp EHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHH
T ss_pred eHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHH----hcCCCCCCEEEEccCCeeee
Confidence 3566665444334445567899999999999999999999999998766533 222 34678999999999999999
Q ss_pred hhHHHHHHHhhcCceEEEccC----CCHHHHHHHHHhccceeeeechHHHHHHHhCCC--CCCCCccchhhhhccCCCCC
Q 039504 83 SLNSVLLCSLRAGAGVLLMQK----FEIGALLELIQRHRVSVAAVVPPLVLALAKNPM--VADYDLSSIRVVLSGAAPLG 156 (240)
Q Consensus 83 g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~~~~lr~v~~~G~~~~ 156 (240)
++...++.++..|+++++.++ +++..+++.++++++|++.++|++++.|.+... ....+++++|.++++||+++
T Consensus 312 g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~ 391 (652)
T 1pg4_A 312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPIN 391 (652)
T ss_dssp HHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCC
T ss_pred chHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCC
Confidence 986578899999999999864 689999999999999999999999999998754 23456789999999999999
Q ss_pred HHHHHHHHHhCC--CCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEe
Q 039504 157 KELEDALRSRVP--QAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIR 234 (240)
Q Consensus 157 ~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~ 234 (240)
+++.+++.+.++ ++++++.||+||++..+.... ........+++|+|+++++++|+| +++++++.|+.|||+|+
T Consensus 392 ~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~---~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GEl~i~ 467 (652)
T 1pg4_A 392 PEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL---PGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVIT 467 (652)
T ss_dssp HHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCC---TTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEEC
T ss_pred HHHHHHHHHHhCCCCCcEEccccCcccccceecCC---CCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCceEEEEEc
Confidence 999999999983 288999999999986654431 111234568999999999999999 66999999999999999
Q ss_pred C--CCCCC
Q 039504 235 G--PQIMK 240 (240)
Q Consensus 235 ~--~~~~~ 240 (240)
| |++++
T Consensus 468 g~~p~~~~ 475 (652)
T 1pg4_A 468 DSWPGQAR 475 (652)
T ss_dssp SCCTTCCC
T ss_pred cCCCchhh
Confidence 9 67763
No 9
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=3.4e-39 Score=268.63 Aligned_cols=217 Identities=24% Similarity=0.318 Sum_probs=185.1
Q ss_pred CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504 18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG 97 (240)
Q Consensus 18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~ 97 (240)
.....++|+++++|||||||.||+|.++|.++......... .+++.++|+++..+|++|..++. .++.++..|++
T Consensus 138 ~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~ 212 (512)
T 3fce_A 138 EHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVE----DFNLQTGQVFLNQAPFSFDLSVM-DIYPSLVTGGT 212 (512)
T ss_dssp GGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHH----HTTCCSSCEEEECSCTTSGGGHH-HHHHHHHTTCE
T ss_pred cccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHH----hcCCCCCCEEEEeCCccHhHHHH-HHHHHHhCCCE
Confidence 44567899999999999999999999999999988877665 44678999999999999999986 68899999999
Q ss_pred EEEccC---CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccc
Q 039504 98 VLLMQK---FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQ 174 (240)
Q Consensus 98 ~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~ 174 (240)
+++.++ +++..+++.++++++|++.++|++++.+..........++++|.++++|+++++++.+++.+.|+++++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~ 292 (512)
T 3fce_A 213 LWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMN 292 (512)
T ss_dssp EEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEe
Confidence 999876 78999999999999999999999999999887777778889999999999999999999999998999999
Q ss_pred cccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504 175 GYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240 (240)
Q Consensus 175 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~ 240 (240)
.||+||++..+................++|+|.++++++|+| +++++++.|+.|||+|+||++++
T Consensus 293 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~ 357 (512)
T 3fce_A 293 TYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSV 357 (512)
T ss_dssp EECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCS
T ss_pred CcccChhhhheeeEEeccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccCh
Confidence 999999987665432111001122456799999999999999 77999999999999999999874
No 10
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=3.6e-38 Score=265.68 Aligned_cols=225 Identities=20% Similarity=0.254 Sum_probs=186.2
Q ss_pred cchhhHhhcCCCCCCC----CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecch
Q 039504 3 LHFTVLSEADEDQIPE----VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPL 78 (240)
Q Consensus 3 ~~~~~l~~~~~~~~~~----~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 78 (240)
.++.++.+........ ....++|+++++|||||||.||+|.++|.++......... ..++.+++++++..|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 275 (580)
T 3etc_A 200 IDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKY----WQNVEDDGLHYTVADS 275 (580)
T ss_dssp EEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHT----TSCCCTTCEEEECCCT
T ss_pred ccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHH----hhCCCCCceEEEeCCh
Confidence 3455555544433221 3577899999999999999999999999988777655443 3467899999999999
Q ss_pred HHhhhhHHHHHHHhhcCceEEEc--cCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCC
Q 039504 79 FHIYSLNSVLLCSLRAGAGVLLM--QKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLG 156 (240)
Q Consensus 79 ~~~~g~~~~~~~~l~~G~~~v~~--~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~ 156 (240)
.|..+.+..++.++..|+++++. ..+++..+++.++++++|++.++|++++.|.+. .....+++++|.+++|||+++
T Consensus 276 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~~~~~~l~~lr~i~~gGe~l~ 354 (580)
T 3etc_A 276 GWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-DLSHYNFSTLKYAVVAGEPLN 354 (580)
T ss_dssp TSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-CC---CCTTCCEEEECSSCCC
T ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-ccccCCCccceEEEEccCCCC
Confidence 99888876788899999999887 569999999999999999999999999999886 334557789999999999999
Q ss_pred HHHHHHHHHhCCCCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeC-
Q 039504 157 KELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRG- 235 (240)
Q Consensus 157 ~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~- 235 (240)
+++.+++.+.+ ++++++.||+||++..+.... ......+++|+|.|+++++|+| +++++++.|+.|||+|+|
T Consensus 355 ~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-----~~~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~ 427 (580)
T 3etc_A 355 PEVFNRFLEFT-GIKLMEGFGQTETVVTIATFP-----WMEPKPGSIGKPTPGYKIELMD-RDGRLCEVGEEGEIVINTM 427 (580)
T ss_dssp HHHHHHHHHHH-SCCCEEEECCTTSSCCEECCT-----TSCCCTTCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEECT
T ss_pred HHHHHHHHHHh-CCeEecccccccccceeecCC-----CCCCCCCccccCCCCCEEEEEC-CCCCCCCCCCceEEEEecC
Confidence 99999999988 889999999999986554431 2234668999999999999999 569999999999999997
Q ss_pred ----CCCC
Q 039504 236 ----PQIM 239 (240)
Q Consensus 236 ----~~~~ 239 (240)
+.++
T Consensus 428 ~g~~~~~~ 435 (580)
T 3etc_A 428 EGKPVGLF 435 (580)
T ss_dssp TCCCTTCC
T ss_pred CCCCCeee
Confidence 5665
No 11
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=4.7e-38 Score=264.55 Aligned_cols=223 Identities=21% Similarity=0.277 Sum_probs=184.7
Q ss_pred chhhHhhcCCCCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHH--HHHhhhcCCCCCccccCCcEEEEecchHHh
Q 039504 4 HFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLIT--SVAQQVDGENPNLYLTNGDVVLCVLPLFHI 81 (240)
Q Consensus 4 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~--~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 81 (240)
.++++.+............++|+++|+|||||||.||+|.++|. +.. ..... . .+++.++|+++..+|++|.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~----~~~~~~~d~~~~~~p~~~~ 259 (570)
T 3c5e_A 186 NFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-G----WTGLQASDIMWTISDTGWI 259 (570)
T ss_dssp EHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-T----TTSCCTTCEEEECCCTTSH
T ss_pred cHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-h----hcCCCCCceEEEcCchHHH
Confidence 35555554443334445678999999999999999999999999 444 33222 2 4578899999999999999
Q ss_pred hhhHHHHHHHhhcCceEEEcc--CCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHH
Q 039504 82 YSLNSVLLCSLRAGAGVLLMQ--KFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKEL 159 (240)
Q Consensus 82 ~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~ 159 (240)
.++...++.++..|+++++.+ .+++..+++.++++++|++.++|++++.|.+.. .....++++|.+++||+++++++
T Consensus 260 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~~~~ 338 (570)
T 3c5e_A 260 LNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPET 338 (570)
T ss_dssp HHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCCHHH
T ss_pred HHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccceEEEEcCCcCCHHH
Confidence 998767888999999998876 689999999999999999999999999998863 33446789999999999999999
Q ss_pred HHHHHHhCCCCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEe-----
Q 039504 160 EDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIR----- 234 (240)
Q Consensus 160 ~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~----- 234 (240)
.+++++.+ ++++++.||+||++..+.... ......+++|+|.++++++|+| ++++++|.|+.|||+|+
T Consensus 339 ~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-----~~~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~ 411 (570)
T 3c5e_A 339 LENWRAQT-GLDIRESYGQTETGLTCMVSK-----TMKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIR 411 (570)
T ss_dssp HHHHHHHH-SCCCEEEEEETTTEEEEECCT-----TSCCCTTCCCEECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBC
T ss_pred HHHHHHHh-CCchhhccchhhcccceecCc-----ccccCCCcccccCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCC
Confidence 99999988 889999999999986554321 1234567899999999999999 66999999999999999
Q ss_pred CCCCCC
Q 039504 235 GPQIMK 240 (240)
Q Consensus 235 ~~~~~~ 240 (240)
||++++
T Consensus 412 g~~v~~ 417 (570)
T 3c5e_A 412 PIGIFS 417 (570)
T ss_dssp CTTCCC
T ss_pred Cchhhc
Confidence 888764
No 12
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=5e-39 Score=269.65 Aligned_cols=228 Identities=30% Similarity=0.456 Sum_probs=190.8
Q ss_pred chhhHhhcCCCCCCCCCCCC-CCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhh
Q 039504 4 HFTVLSEADEDQIPEVAIEP-DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIY 82 (240)
Q Consensus 4 ~~~~l~~~~~~~~~~~~~~~-~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~ 82 (240)
.++++..............+ +|+++|+|||||||.||+|.++|.++......... .+++.++|+++..+|++|..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~ 234 (549)
T 3g7s_A 159 SLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAV----ATGLSHMDTIVGCMPMFHSA 234 (549)
T ss_dssp CHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHH----HHCCCTTCEEECCSCTTSHH
T ss_pred CHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHH----HcCCCCCCEEEEeCcHHHHH
Confidence 45555555444434444445 89999999999999999999999999988877665 45678999999999999999
Q ss_pred hhHHHHHHHhhcCceEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCC--CCccchhhhhccCCCCCHHHH
Q 039504 83 SLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVAD--YDLSSIRVVLSGAAPLGKELE 160 (240)
Q Consensus 83 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~--~~~~~lr~v~~~G~~~~~~~~ 160 (240)
++.. ++.++..|+++++.+.+++..+++.++++++|++.++|++++.|.+...... ..++++|.+++||+++++++.
T Consensus 235 ~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~ 313 (549)
T 3g7s_A 235 EFGL-VNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALV 313 (549)
T ss_dssp HHHH-HTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHH
T ss_pred HHHH-HHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHH
Confidence 9874 7888999999999999999999999999999999999999999987644333 567899999999999999999
Q ss_pred HHHHHh----CC--CCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEe
Q 039504 161 DALRSR----VP--QAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIR 234 (240)
Q Consensus 161 ~~~~~~----~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~ 234 (240)
+++.+. ++ ++++++.||+||++.++..... .......++|+|.++++++|+|++++++++.|+.|||+|+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~----~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~ 389 (549)
T 3g7s_A 314 EKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPP----LRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIR 389 (549)
T ss_dssp HHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCG----GGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEE
T ss_pred HHHHHHHHhhcCCccccccceEeccccchhhhcCCc----cccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEE
Confidence 999988 52 3899999999999877655421 1123567899999999999999899999999999999999
Q ss_pred CCCCCC
Q 039504 235 GPQIMK 240 (240)
Q Consensus 235 ~~~~~~ 240 (240)
||++++
T Consensus 390 g~~v~~ 395 (549)
T 3g7s_A 390 GPNIFK 395 (549)
T ss_dssp STTSCS
T ss_pred Ccchhh
Confidence 999874
No 13
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=3.5e-39 Score=269.98 Aligned_cols=212 Identities=28% Similarity=0.406 Sum_probs=180.6
Q ss_pred CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHH-HHHHHhhcCce
Q 039504 19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNS-VLLCSLRAGAG 97 (240)
Q Consensus 19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~~l~~G~~ 97 (240)
....++|+++++|||||||.||+|.++|+++......... .+++.++|++++.+|++|.+++.. .++.++..|++
T Consensus 177 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~ 252 (539)
T 1mdb_A 177 PEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE----VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGR 252 (539)
T ss_dssp CCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH----HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCE
T ss_pred CCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH----hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCE
Confidence 4567899999999999999999999999999888776655 446789999999999999999874 57899999999
Q ss_pred EEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccc
Q 039504 98 VLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYG 177 (240)
Q Consensus 98 ~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG 177 (240)
+++.+.+++..+++.++++++|++.++|++++.+.+........++++|.+++||+++++++.+++++.+ ++++++.||
T Consensus 253 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG 331 (539)
T 1mdb_A 253 VVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFG 331 (539)
T ss_dssp EEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEE
T ss_pred EEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEEEEEc
Confidence 9999999999999999999999999999999999876554556788999999999999999999999998 799999999
Q ss_pred ccccccchhhccCCCCCCCCCCCCccccccCC-ceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504 178 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRN-AELKVIDPETGASLPHNQPGEICIRGPQIMK 240 (240)
Q Consensus 178 ~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~-~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~ 240 (240)
+||++..+... .........++|+|+++ .+++|+| +++++++.|+.|||+|+||++++
T Consensus 332 ~TE~~~~~~~~----~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~ 390 (539)
T 1mdb_A 332 MAEGLVNYTRL----DDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIR 390 (539)
T ss_dssp CTTSCEEECCT----TSCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCS
T ss_pred CCCCcccccCC----CCcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccch
Confidence 99965332211 01111233678999976 4799999 67999999999999999999874
No 14
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=2.9e-39 Score=267.15 Aligned_cols=218 Identities=19% Similarity=0.260 Sum_probs=174.0
Q ss_pred CCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccC------CcEEEEecchHHhhhhHHHHHH
Q 039504 17 PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTN------GDVVLCVLPLFHIYSLNSVLLC 90 (240)
Q Consensus 17 ~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~------~d~~l~~~p~~~~~g~~~~~~~ 90 (240)
......++|+++|+|||||||.||+|.++|.++......... .+.+.+ +|+++..+|++|.+++...++.
T Consensus 176 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~ 251 (480)
T 3t5a_A 176 TFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMS----GYFADTDGIPPPNSALVSWLPFYHDMGLVIGICA 251 (480)
T ss_dssp CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHH----HHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHH
T ss_pred CCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHH----HhccccccCCCCCCeEEEeCCCcCccHHHHHHHH
Confidence 345567889999999999999999999999999887766554 223444 8999999999999998767899
Q ss_pred HhhcCceEEEccCC----CHHHHHHHHHhccceeeeechHHHHHHHhC----CCCCCCCccchhhhhccCCCCCHHHHHH
Q 039504 91 SLRAGAGVLLMQKF----EIGALLELIQRHRVSVAAVVPPLVLALAKN----PMVADYDLSSIRVVLSGAAPLGKELEDA 162 (240)
Q Consensus 91 ~l~~G~~~v~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~----~~~~~~~~~~lr~v~~~G~~~~~~~~~~ 162 (240)
++..|+++++.++. ++..+++.++++++| +.++|+++..++.. .......++++|.+++||+++++++.++
T Consensus 252 ~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~ 330 (480)
T 3t5a_A 252 PILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKR 330 (480)
T ss_dssp HHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHHH
T ss_pred HHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHHHH
Confidence 99999999998753 899999999999999 88999998887763 2234567889999999999999999999
Q ss_pred HHHhC-----CCCcccccccccccccchhhccCCCCC--------------------CCCCCCCccccccCCceEEEeeC
Q 039504 163 LRSRV-----PQAILGQGYGMTEAGPVLSMCLGFAKQ--------------------PFPTKSGSCGTVVRNAELKVIDP 217 (240)
Q Consensus 163 ~~~~~-----~~~~i~~~yG~tE~~~~~~~~~~~~~~--------------------~~~~~~~~~G~~~~~~~v~i~d~ 217 (240)
+++.| +++++++.||+||++.+++........ .......++|+|++ ++++|+|+
T Consensus 331 ~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~ 409 (480)
T 3t5a_A 331 FADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDS 409 (480)
T ss_dssp HHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEET
T ss_pred HHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcC
Confidence 99998 346899999999998776554211100 00123458999999 99999998
Q ss_pred CCCCCCCCCCCceEEEeCCCCCC
Q 039504 218 ETGASLPHNQPGEICIRGPQIMK 240 (240)
Q Consensus 218 ~~~~~~~~g~~Gel~v~~~~~~~ 240 (240)
+++++++.|++|||+|+||++++
T Consensus 410 ~~g~~~~~g~~GEl~v~g~~v~~ 432 (480)
T 3t5a_A 410 DTCIECPDGTVGEIWVHGDNVAN 432 (480)
T ss_dssp TTTEECCTTBCEEEEEESTTSCC
T ss_pred CCCcCCCCCCEEEEEEeCCcccc
Confidence 88999999999999999999975
No 15
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=3.3e-38 Score=269.45 Aligned_cols=232 Identities=21% Similarity=0.290 Sum_probs=188.2
Q ss_pred chhhHhhcCCCCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhh
Q 039504 4 HFTVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYS 83 (240)
Q Consensus 4 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 83 (240)
.|+++.+......++..++++|+++|+|||||||.||+|.++|.++.......... .+++.++|++++..|++|+.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~g 318 (663)
T 1ry2_A 242 DWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRY---TFDTHQEDVFFTAGDIGWITG 318 (663)
T ss_dssp EHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHH---HSCCCSSCEEEECSCTTSHHH
T ss_pred cHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHH---hcCCCCCcEEEEcCCcHHhhh
Confidence 35555554443344556778999999999999999999999999987665432211 346789999999999999999
Q ss_pred hHHHHHHHhhcCceEEEccC----CCHHHHHHHHHhccceeeeechHHHHHHHhCCCC--CCCCccchhhhhccCCCCCH
Q 039504 84 LNSVLLCSLRAGAGVLLMQK----FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV--ADYDLSSIRVVLSGAAPLGK 157 (240)
Q Consensus 84 ~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~~~lr~v~~~G~~~~~ 157 (240)
....++.++..|+++++.++ .++..+++.|+++++|++.++|++++.|.+.... ...+++++|.++++||++++
T Consensus 319 ~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~ 398 (663)
T 1ry2_A 319 HTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAA 398 (663)
T ss_dssp HHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCH
T ss_pred hHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCH
Confidence 86578899999999998764 6899999999999999999999999999887542 34567899999999999999
Q ss_pred HHHHHHHHhCC--CCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCC-CCCceEEEe
Q 039504 158 ELEDALRSRVP--QAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPH-NQPGEICIR 234 (240)
Q Consensus 158 ~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~-g~~Gel~v~ 234 (240)
++++++.+.++ ++++++.||+||++..+...... .......+++|+|+++++++|+|++++++++. |+.|||+|+
T Consensus 399 ~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~ 476 (663)
T 1ry2_A 399 EVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAG--GVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVK 476 (663)
T ss_dssp HHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTT--TCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEES
T ss_pred HHHHHHHHHhCCCCceEEEeECCccccCeeeccCCC--CCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEe
Confidence 99999999883 28999999999998665543110 11234568999999999999999658999998 999999999
Q ss_pred CC--CCCC
Q 039504 235 GP--QIMK 240 (240)
Q Consensus 235 ~~--~~~~ 240 (240)
|| ++++
T Consensus 477 g~~p~~~~ 484 (663)
T 1ry2_A 477 AAWPSFAR 484 (663)
T ss_dssp SCCTTSCC
T ss_pred cCCCchhc
Confidence 94 6653
No 16
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1.7e-38 Score=266.13 Aligned_cols=212 Identities=25% Similarity=0.347 Sum_probs=182.3
Q ss_pred CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHH-HHHHHhhcCce
Q 039504 19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNS-VLLCSLRAGAG 97 (240)
Q Consensus 19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~~l~~G~~ 97 (240)
....++|+++++|||||||.||+|.++|.++......... .+++.++|++++.+|++|.+++.. .++.++..|++
T Consensus 186 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~ 261 (544)
T 3o83_A 186 SSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAE----ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGC 261 (544)
T ss_dssp CCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCE
T ss_pred ccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHH----HhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCE
Confidence 4567899999999999999999999999999988877666 456899999999999999988863 47889999999
Q ss_pred EEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccc
Q 039504 98 VLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYG 177 (240)
Q Consensus 98 ~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG 177 (240)
+++.+.+++..+++.++++++|++.++|++++.+.+........++++|.+++||+++++++.+++++.+ ++++++.||
T Consensus 262 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~YG 340 (544)
T 3o83_A 262 VVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVFG 340 (544)
T ss_dssp EEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEEEEEEE
T ss_pred EEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEeeec
Confidence 9999999999999999999999999999999999887666566778999999999999999999999998 899999999
Q ss_pred ccccccchhhccCCCCCCCCCCCCcccccc-CCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504 178 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVV-RNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240 (240)
Q Consensus 178 ~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~ 240 (240)
+||++..+... .........++|+|+ ++++++|+| +++++++.|+.|||+|+||.+++
T Consensus 341 ~TE~~~~~~~~----~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~ 399 (544)
T 3o83_A 341 MAEGLVNYTRL----DDSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFC 399 (544)
T ss_dssp CTTSCEEECCT----TSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCS
T ss_pred cccccceeecC----CCchhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcch
Confidence 99987543321 111112335789996 899999999 78999999999999999999874
No 17
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=100.00 E-value=1.8e-38 Score=254.11 Aligned_cols=204 Identities=19% Similarity=0.196 Sum_probs=169.1
Q ss_pred CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecch-HHhhhhHHHHHHHhhcCceE
Q 039504 20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPL-FHIYSLNSVLLCSLRAGAGV 98 (240)
Q Consensus 20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~~~~g~~~~~~~~l~~G~~~ 98 (240)
.+.++++++++|||||||.||+|.++|.++............ ..++.++|+++..+|+ +|..++. ..+.++..|+ .
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~-~~~~~~~d~~l~~~p~g~~~~g~~-~~~~~~~~G~-~ 163 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQ-HRPGRPSGNTLAAIPTGPHIVGAI-NKERALRLGG-M 163 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTT-TSTTCCCCEEEECSCCTTCHHHHH-HHHHHHHTTS-C
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHH-hhCCCCcceEEEecCCCchhhhHH-HHHHHHHcCC-E
Confidence 457889999999999999999999999999888775443222 5578999999999999 8988887 4555688888 6
Q ss_pred EEccCCCHH-----------------------HHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCC
Q 039504 99 LLMQKFEIG-----------------------ALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPL 155 (240)
Q Consensus 99 v~~~~~~~~-----------------------~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~ 155 (240)
++...+++. .+++.++++++|++.++|+++..|++........++++|.+++||+++
T Consensus 164 v~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l 243 (369)
T 3hgu_A 164 FFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTEL 243 (369)
T ss_dssp EECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCC
T ss_pred EECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccC
Confidence 666677887 888899999999999999999999887443334567899999999999
Q ss_pred CHHHHHHHH-HhCCCCcccccccccccccchhhccCCCCCCCCCCCCccccc------cCCceEEEeeCCCCCCCCCCCC
Q 039504 156 GKELEDALR-SRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTV------VRNAELKVIDPETGASLPHNQP 228 (240)
Q Consensus 156 ~~~~~~~~~-~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~------~~~~~v~i~d~~~~~~~~~g~~ 228 (240)
+++++++++ +.||++++++.||+||++.++..+. ..++|++ .|+++++|+|+++++++|.|+.
T Consensus 244 ~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~----------~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~ 313 (369)
T 3hgu_A 244 NLDEIKFIASEILPDCEFSASYGSTSALGVSRSLL----------ITSESQQVIYDSFSPFITYDVVDSITAQTVEYGER 313 (369)
T ss_dssp CHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECC----------BCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCE
T ss_pred CHHHHHHHHHHhCCCcEEEcccCchhhhcceeccc----------cccCCCcccccCCCCCeEEEEECCCCCcCCCCCCc
Confidence 999999999 9998899999999999986654331 1147888 9999999999878999999999
Q ss_pred ceEEEeCC
Q 039504 229 GEICIRGP 236 (240)
Q Consensus 229 Gel~v~~~ 236 (240)
|||+|++.
T Consensus 314 GEl~vt~l 321 (369)
T 3hgu_A 314 GNVIVTHL 321 (369)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEc
Confidence 99999974
No 18
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=9.3e-38 Score=260.52 Aligned_cols=220 Identities=22% Similarity=0.261 Sum_probs=183.5
Q ss_pred CCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCc
Q 039504 17 PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGA 96 (240)
Q Consensus 17 ~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~ 96 (240)
......++|+++++|||||||.||+|.++|.++........... .+++.++++++...|++|..++. .++.++..|+
T Consensus 138 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~G~ 214 (521)
T 3l8c_A 138 RTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA--AFDVPKQPQMLAQPPYSFDLSVM-YWAPTLALGG 214 (521)
T ss_dssp CSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT--TTCCCSSCEEECCSCTTSGGGHH-HHHHHHHTTC
T ss_pred cCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc--ccCCCCCCeEEecCCccHHHHHH-HHHHHHhcCC
Confidence 34567789999999999999999999999999988776654421 24678899999999999988876 6788899999
Q ss_pred eEEEccC---CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccc
Q 039504 97 GVLLMQK---FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILG 173 (240)
Q Consensus 97 ~~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~ 173 (240)
++++.+. .++..+++.+.+++++++.++|+++..+..........++++|.++++|+++++++.+++.+.|++++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~ 294 (521)
T 3l8c_A 215 TLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKII 294 (521)
T ss_dssp EEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEE
T ss_pred EEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEE
Confidence 9998875 4899999999999999999999999999888776677788999999999999999999999999899999
Q ss_pred ccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504 174 QGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240 (240)
Q Consensus 174 ~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~ 240 (240)
+.||+||++.++..+.............++|+|.|+++++|+| +++++++.|+.|||+|+||++++
T Consensus 295 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~ 360 (521)
T 3l8c_A 295 NAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSK 360 (521)
T ss_dssp EEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCS
T ss_pred eCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccCh
Confidence 9999999987665432111111123456799999999999999 67999999999999999999874
No 19
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=4.4e-38 Score=262.11 Aligned_cols=223 Identities=26% Similarity=0.447 Sum_probs=185.1
Q ss_pred hhHhhcCCCCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhH
Q 039504 6 TVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLN 85 (240)
Q Consensus 6 ~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~ 85 (240)
.++........+.....++|+++|+|||||||.||+|.++|.++......... .+++.++|+++..+|++|..++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~~ 227 (517)
T 3r44_A 152 AERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAS----TIDVRYRDRLLLPLPMFHVAALT 227 (517)
T ss_dssp HHHHHHCCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHH----HSCCCTTCEEEECSCTTSHHHHH
T ss_pred HHHhhccCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHH----hcCCCCCCEEEEeCchHHHHHHH
Confidence 33444444444556678899999999999999999999999999988877665 44688999999999999999988
Q ss_pred HHHHHHhhcCceEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHH
Q 039504 86 SVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRS 165 (240)
Q Consensus 86 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~ 165 (240)
..++..+ .|+++++.+.+++..+++.++++++|++.++|++++.|.+........++++|.+++||+++++++.+++.+
T Consensus 228 ~~~~~~~-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~ 306 (517)
T 3r44_A 228 TVIFSAM-RGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAA 306 (517)
T ss_dssp HHHHHHH-HTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHH
T ss_pred HHHHHHh-cCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHh
Confidence 5455555 999999999999999999999999999999999999998876555567789999999999999999999998
Q ss_pred hCCCCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504 166 RVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240 (240)
Q Consensus 166 ~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~ 240 (240)
. ++++++.||+||++..+..... .......+++|+|.++++++|+| +++++++.| .|||+|+||.+++
T Consensus 307 ~--~~~~~~~YG~TE~~~~~~~~~~---~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~ 374 (517)
T 3r44_A 307 K--NIEVVQGYALTESCGGGTLLLS---EDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLK 374 (517)
T ss_dssp T--TCEEEEEEECGGGTTCEEEECG---GGTTTTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCS
T ss_pred c--CCcEEEeecccccccceeecCC---ccccccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhh
Confidence 6 7899999999999876554321 12234567899999999999999 678999999 8999999999874
No 20
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.9e-37 Score=257.65 Aligned_cols=208 Identities=23% Similarity=0.325 Sum_probs=175.7
Q ss_pred CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccc--cCCcEEEEecchHHhhhhHHHHHHHhhcCc
Q 039504 19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYL--TNGDVVLCVLPLFHIYSLNSVLLCSLRAGA 96 (240)
Q Consensus 19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~--~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~ 96 (240)
....++|+++++|||||||.||+|.++|+++......... .+++ .++|++++.+|++|..++...++.++..|+
T Consensus 148 ~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~----~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~ 223 (504)
T 1t5h_X 148 PQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST----QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDG 223 (504)
T ss_dssp CCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHH----TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTC
T ss_pred CCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHH----hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCc
Confidence 4567899999999999999999999999999888776655 3345 788999999999999998656889999999
Q ss_pred eEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCC--CCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccc
Q 039504 97 GVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPM--VADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQ 174 (240)
Q Consensus 97 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~ 174 (240)
++++.+.+++..+++.++++++|++.++|++++.|.+... .....++++|.+++||+++++++.+++++.+ +.++++
T Consensus 224 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~ 302 (504)
T 1t5h_X 224 TYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVN 302 (504)
T ss_dssp EEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEE
T ss_pred eEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-Ccceee
Confidence 9999999999999999999999999999999999987642 2344678999999999999999999999999 688999
Q ss_pred cccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCC---CCCCCCCCceEEEe-CCCCCC
Q 039504 175 GYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETG---ASLPHNQPGEICIR-GPQIMK 240 (240)
Q Consensus 175 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~---~~~~~g~~Gel~v~-~~~~~~ 240 (240)
.||+||++ .+.... ....+++|+|.++++++|+|. .+ ++++.|+.|||+|+ ||.+++
T Consensus 303 ~YG~TE~~-~~~~~~-------~~~~~~~g~p~~~~~~~i~~~-~~~~~~~~~~g~~GEl~v~gg~~~~~ 363 (504)
T 1t5h_X 303 IYGTTEAM-NSLYMR-------QPKTGTEMAPGFFSEVRIVRI-GGGVDEIVANGEEGELIVAASDSAFV 363 (504)
T ss_dssp EEEETTTE-EEEEEE-------SCSSSSEEBCCTTCCEEEECT-TSCTTCBCCTTCCEEEEEECCTTSCC
T ss_pred eecccccc-cccccc-------CCCCCccccCCCCCceeEEec-cCCCCCcCCCCCcceEEEeCCceeec
Confidence 99999993 322221 234578899999999999994 45 89999999999999 888763
No 21
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=4.5e-38 Score=266.11 Aligned_cols=218 Identities=22% Similarity=0.331 Sum_probs=183.4
Q ss_pred CCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCc
Q 039504 17 PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGA 96 (240)
Q Consensus 17 ~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~ 96 (240)
.....+++|+++|+|||||||.||+|.++|.++......... .+++.++|++++.+|++|..|+...++.++..|+
T Consensus 160 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~ 235 (590)
T 3kxw_A 160 QPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT----SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGI 235 (590)
T ss_dssp CCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTC
T ss_pred CCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHH----hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCc
Confidence 345677899999999999999999999999999998877766 4567899999999999999999866889999999
Q ss_pred eEEEccCC----CHHHHHHHHHhccceeeeechHHHHHHHhCCC---CCCCCccchhhhhccCCCCCHHHHHHHHHhCC-
Q 039504 97 GVLLMQKF----EIGALLELIQRHRVSVAAVVPPLVLALAKNPM---VADYDLSSIRVVLSGAAPLGKELEDALRSRVP- 168 (240)
Q Consensus 97 ~~v~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~---~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~- 168 (240)
++++.+++ ++..+++.++++++|++.++|++++.+.+... .....++++|.+++||+++++++.+++.+.|+
T Consensus 236 ~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~ 315 (590)
T 3kxw_A 236 QAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKE 315 (590)
T ss_dssp EEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGG
T ss_pred eEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHH
Confidence 99998765 89999999999999999999999998877533 23456789999999999999999999999873
Q ss_pred ----CCcccccccccccccchhhccCCCC----------------------CCCCCCCCccccccCCceEEEeeCCCCCC
Q 039504 169 ----QAILGQGYGMTEAGPVLSMCLGFAK----------------------QPFPTKSGSCGTVVRNAELKVIDPETGAS 222 (240)
Q Consensus 169 ----~~~i~~~yG~tE~~~~~~~~~~~~~----------------------~~~~~~~~~~G~~~~~~~v~i~d~~~~~~ 222 (240)
+.++++.||+||++.+++....... ........++|+|.++ ++|+|++++++
T Consensus 316 ~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~ 393 (590)
T 3kxw_A 316 FGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIP 393 (590)
T ss_dssp GTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCB
T ss_pred cCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcC
Confidence 4579999999999877654321100 1112234578999998 88999888999
Q ss_pred CCCCCCceEEEeCCCCCC
Q 039504 223 LPHNQPGEICIRGPQIMK 240 (240)
Q Consensus 223 ~~~g~~Gel~v~~~~~~~ 240 (240)
++.|++|||+|+||++++
T Consensus 394 ~~~g~~GEl~v~g~~v~~ 411 (590)
T 3kxw_A 394 CDFDQVGEIWVQSNSVAK 411 (590)
T ss_dssp CCTTBCEEEEEESTTSCC
T ss_pred CCCCCEEEEEEeCCcccc
Confidence 999999999999999874
No 22
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=6.3e-37 Score=259.60 Aligned_cols=212 Identities=21% Similarity=0.226 Sum_probs=178.1
Q ss_pred CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceE
Q 039504 19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV 98 (240)
Q Consensus 19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~ 98 (240)
....++|+++|+|||||||.||+|.++|.++.+.+.. .. .+++.++|+++..+|++|..++. .++.++..|+++
T Consensus 159 ~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~----~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~ 232 (620)
T 4dg8_A 159 PCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QS----FLAFAPQMRFLVNSPLSFDAATL-EIWGALLNGGCC 232 (620)
T ss_dssp CCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CG----GGTTCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEE
T ss_pred CCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HH----hhCCCCCCEEEEECccCHHHHHH-HHHHHHhcCCEE
Confidence 3456899999999999999999999999998776543 22 45678999999999999999987 588899999999
Q ss_pred EEcc--CCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccc
Q 039504 99 LLMQ--KFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGY 176 (240)
Q Consensus 99 v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y 176 (240)
++.+ .+++..+++.++++++|++.++|++++.|.+.. ...++++|.+++|||++++++.+++.+.+++++++|.|
T Consensus 233 v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 309 (620)
T 4dg8_A 233 VLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGY 309 (620)
T ss_dssp EECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEE
T ss_pred EeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeE
Confidence 9864 589999999999999999999999999998743 23577899999999999999999998888889999999
Q ss_pred cccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504 177 GMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240 (240)
Q Consensus 177 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~ 240 (240)
|+||++.+++..... .........++|+|+++++++|+|++....+|.|++|||+|+||++++
T Consensus 310 G~TE~~~~~~~~~~~-~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~ 372 (620)
T 4dg8_A 310 GPTENTTFTCCHVVT-DDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQ 372 (620)
T ss_dssp CCGGGCSCSEEEECC-TGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCS
T ss_pred chhhhhhheEEEecc-ccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEecccccc
Confidence 999998765543221 122234557899999999999999554444899999999999999875
No 23
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=8.3e-37 Score=257.19 Aligned_cols=212 Identities=23% Similarity=0.286 Sum_probs=179.2
Q ss_pred CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504 18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG 97 (240)
Q Consensus 18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~ 97 (240)
.....++|+++|+|||||||.||+|.++|.++....... . ..++.++|+++..+|++|..+.. .++.++..|++
T Consensus 208 ~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~----~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~ 281 (570)
T 4gr5_A 208 ATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-D----YAGFGPDEVFLQCSPVSWDAFGL-ELFGALLFGAR 281 (570)
T ss_dssp CCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC-C----SSCCSTTCEEEECSCTTSSTHHH-HHHHHHTTTCE
T ss_pred CCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh-h----hcCCCCCCEEEEecCccHHHHHH-HHHHHHhcCCE
Confidence 345678999999999999999999999999987655431 2 45788999999999998876655 67889999999
Q ss_pred EEEcc--CCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccc
Q 039504 98 VLLMQ--KFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQG 175 (240)
Q Consensus 98 ~v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~ 175 (240)
+++.+ .+++..+++.++++++|++.++|++++.|.+... ..++++|.+++||++++.++.+++.+.++++++++.
T Consensus 282 ~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~ 358 (570)
T 4gr5_A 282 CVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNG 358 (570)
T ss_dssp EEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEE
T ss_pred EEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEe
Confidence 99876 4799999999999999999999999999987643 357889999999999999999999999988999999
Q ss_pred ccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504 176 YGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240 (240)
Q Consensus 176 yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~ 240 (240)
||+||++.++....... ........++|+|+++++++|+| +++++++.|++|||+|+||.+++
T Consensus 359 YG~TE~~~~~~~~~~~~-~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~ 421 (570)
T 4gr5_A 359 YGPAESMGFTTHHAVVA-GDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAH 421 (570)
T ss_dssp ECCGGGCSCSEEEECCG-GGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCC
T ss_pred echhhheeeeeeeeecc-cccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccch
Confidence 99999987655432211 11233456799999999999999 67999999999999999999874
No 24
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=5.8e-37 Score=256.66 Aligned_cols=216 Identities=29% Similarity=0.451 Sum_probs=176.1
Q ss_pred CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceE
Q 039504 19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV 98 (240)
Q Consensus 19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~ 98 (240)
...+++|+++|+|||||||.||+|.++|+++......... ...+++.++|++++.+|++|.+++. ..+.++..|+++
T Consensus 171 ~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~--~~~~~~~~~d~~l~~~p~~h~~~~~-~~~~~l~~G~~~ 247 (541)
T 1v25_A 171 VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASL--VDGTALSEKDVVLPVVPMFHVNAWC-LPYAATLVGAKQ 247 (541)
T ss_dssp CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTS--TTTTCCCTTCEEEECSCTTSHHHHT-HHHHHHHHTCEE
T ss_pred ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhh--cccccCCCCCEEEEeccchhhhHHH-HHHHHHhcCceE
Confidence 3456789999999999999999999999998776654211 1134678999999999999999986 567888999999
Q ss_pred EEccC-CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccc
Q 039504 99 LLMQK-FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYG 177 (240)
Q Consensus 99 v~~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG 177 (240)
++.+. +++..+++.++++++|++.++|++++.|.+........++++|.+++||+++++++.+++ +.+ ++++++.||
T Consensus 248 v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~~~YG 325 (541)
T 1v25_A 248 VLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVRQGYG 325 (541)
T ss_dssp EECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEEEEEE
T ss_pred EeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCceeeccc
Confidence 98864 799999999999999999999999999987655445567899999999999999999999 667 899999999
Q ss_pred ccccccchhhccCCCC-CCC-----CCCCCccccccCCceEEEeeCCCCCCCCC-C-CCceEEEeCCCCCC
Q 039504 178 MTEAGPVLSMCLGFAK-QPF-----PTKSGSCGTVVRNAELKVIDPETGASLPH-N-QPGEICIRGPQIMK 240 (240)
Q Consensus 178 ~tE~~~~~~~~~~~~~-~~~-----~~~~~~~G~~~~~~~v~i~d~~~~~~~~~-g-~~Gel~v~~~~~~~ 240 (240)
+||++.++..+..... ... .....++|+|+|+++++|+| +++++++. | +.|||+|+||.+++
T Consensus 326 ~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~ 395 (541)
T 1v25_A 326 LTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITG 395 (541)
T ss_dssp CGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBS
T ss_pred ccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhc
Confidence 9999876654321100 000 01246899999999999999 56888985 3 68999999999874
No 25
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=3.4e-37 Score=256.47 Aligned_cols=207 Identities=26% Similarity=0.422 Sum_probs=173.2
Q ss_pred CCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCc
Q 039504 17 PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGA 96 (240)
Q Consensus 17 ~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~ 96 (240)
......++|+++|+|||||||.||+|.++|.++......... .+++.++|+++..+|++|.+++...+...+..|.
T Consensus 153 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~ 228 (509)
T 3ivr_A 153 SAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVD----AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGA 228 (509)
T ss_dssp CCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCE
T ss_pred CcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHH----hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCc
Confidence 345677899999999999999999999999999988877666 4468999999999999999999854444555555
Q ss_pred eEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccc
Q 039504 97 GVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGY 176 (240)
Q Consensus 97 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y 176 (240)
.++. ..+++..+++.++++++|++.++|+++..+.+.. ....++++|.++.+|++ ++.+++.+.++++++++.|
T Consensus 229 ~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~Y 302 (509)
T 3ivr_A 229 SVIA-AKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATF 302 (509)
T ss_dssp EEEC-SSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEE
T ss_pred EEEe-cccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEccc
Confidence 5554 4899999999999999999999999999998876 34467789999999987 8899999999899999999
Q ss_pred cccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504 177 GMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240 (240)
Q Consensus 177 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~ 240 (240)
|+||++.++..+.. ......+|+|.++++++|+| +++++++.|+.|||+|+||++++
T Consensus 303 G~TE~~~~~~~~~~------~~~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~ 359 (509)
T 3ivr_A 303 GQSETSGLSTFAPY------RDRPKSAGRPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFK 359 (509)
T ss_dssp EEGGGTEEEEEEEG------GGSTTSCCEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCC
T ss_pred CccccccccccCcc------ccCCCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEecCCccc
Confidence 99999877655421 12234589999999999999 55999999999999999999874
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=2.1e-37 Score=257.24 Aligned_cols=211 Identities=27% Similarity=0.421 Sum_probs=178.0
Q ss_pred CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504 18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG 97 (240)
Q Consensus 18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~ 97 (240)
....+++|+++++|||||||.||+|.++|.++......... .+++.++|+++..+|++|..++...++.++..|++
T Consensus 149 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~ 224 (505)
T 3nyq_A 149 EDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALAD----AWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGS 224 (505)
T ss_dssp CCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHH----HHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCE
T ss_pred CCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHH----HhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCE
Confidence 34567889999999999999999999999999988877665 44678999999999999999987678899999999
Q ss_pred EEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCC---CCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccc
Q 039504 98 VLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVA---DYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQ 174 (240)
Q Consensus 98 ~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~---~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~ 174 (240)
+++.+++++..+++.+ ++++|++.++|+++..+.+..... ...++++|.+++||+++++++.+++.+.+ ++++++
T Consensus 225 ~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~ 302 (505)
T 3nyq_A 225 VRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRRVIE 302 (505)
T ss_dssp EEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEE
T ss_pred EEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCeeec
Confidence 9999999999999999 889999999999999998743322 23456789999999999999999999998 889999
Q ss_pred cccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCC---CCCceEEEeCCCCCC
Q 039504 175 GYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPH---NQPGEICIRGPQIMK 240 (240)
Q Consensus 175 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~---g~~Gel~v~~~~~~~ 240 (240)
.||+||++..+... ........++|+|.++++++|+| +++++++. |++|||+|+||++++
T Consensus 303 ~YG~TE~~~~~~~~-----~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~ 365 (505)
T 3nyq_A 303 RYGMTETLMNTSVR-----ADGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFT 365 (505)
T ss_dssp EEEETTTEEEEECC-----TTSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCC
T ss_pred ccchhhcccccccC-----CCCCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhh
Confidence 99999998665443 22234567899999999999999 56888876 899999999999874
No 27
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=7.3e-37 Score=259.66 Aligned_cols=223 Identities=26% Similarity=0.364 Sum_probs=184.1
Q ss_pred HhhcCCCCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHH-
Q 039504 8 LSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNS- 86 (240)
Q Consensus 8 l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~- 86 (240)
...............++|+++|+|||||||.||+|.++|.++...+..... .+++.++|++++.+|++|.+++..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~----~~~~~~~~~~l~~~p~~~~~~~~~~ 243 (617)
T 3rg2_A 168 AINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE----ICQFTQQTRYLCAIPAAHNYAMSSP 243 (617)
T ss_dssp HHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH----HHTCCTTCEEEECSCTTSHHHHHSS
T ss_pred hhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHH----hcCCCCcceEEEeccchhhhhhhHH
Confidence 333333333445567899999999999999999999999999988877665 456789999999999999888763
Q ss_pred HHHHHhhcCceEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCC--CCCccchhhhhccCCCCCHHHHHHHH
Q 039504 87 VLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVA--DYDLSSIRVVLSGAAPLGKELEDALR 164 (240)
Q Consensus 87 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~--~~~~~~lr~v~~~G~~~~~~~~~~~~ 164 (240)
.++.++..|+++++.+..++..+++.++++++|++.++|+++..+.+..... ...++++|.+++|||++++++.+++.
T Consensus 244 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~ 323 (617)
T 3rg2_A 244 GSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIP 323 (617)
T ss_dssp HHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHH
T ss_pred HHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHH
Confidence 5788999999999998899999999999999999999999999887743322 23678999999999999999999999
Q ss_pred HhCCCCcccccccccccccchhhccCCCCCCCCCCCCcccccc-CCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504 165 SRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVV-RNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240 (240)
Q Consensus 165 ~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~ 240 (240)
+.+ +++++|.||+||++..+... .........++|+|. ++.++.|+| ++++++|.|++|||+|+||++++
T Consensus 324 ~~~-~~~~~~~YG~tE~~~~~~~~----~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~ 394 (617)
T 3rg2_A 324 AEI-GCQLQQVFGMAEGLVNYTRL----DDSAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFR 394 (617)
T ss_dssp HHT-CSEEEEEEEETTEEEEECCT----TSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCS
T ss_pred HHh-CCcEEEEeccCcceeecccC----CCcccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccc
Confidence 998 89999999999987543322 011111234789997 788999999 77999999999999999999874
No 28
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=1e-36 Score=248.99 Aligned_cols=210 Identities=19% Similarity=0.162 Sum_probs=172.8
Q ss_pred CCCCC-CCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504 19 VAIEP-DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG 97 (240)
Q Consensus 19 ~~~~~-~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~ 97 (240)
..+.+ +|+++++|||||||.||+|.++|.++..........+. ..++.++|+++..+|+.|..+....++.++..|++
T Consensus 80 ~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 80 VAGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLY-MVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp CCSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHH-HTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred ccCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHH-HcCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 34556 88999999999999999999999998776554422111 23678999999999987766666577889999999
Q ss_pred EEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCC--ccchhhhhccCCCCCHHHHHHHHHhCCCCccccc
Q 039504 98 VLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYD--LSSIRVVLSGAAPLGKELEDALRSRVPQAILGQG 175 (240)
Q Consensus 98 ~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~--~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~ 175 (240)
+++.+.++++.+++.++++++|++.++|+++..|.+.....+.. ++++|.+++||+++++++++++++.| ++++++.
T Consensus 159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~ 237 (436)
T 3qov_A 159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNS 237 (436)
T ss_dssp EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEE
T ss_pred EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEec
Confidence 99998899999999999999999999999999998765443333 67899999999999999999999999 8999999
Q ss_pred ccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCC
Q 039504 176 YGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQ 237 (240)
Q Consensus 176 yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~ 237 (240)
||+||+++.+..... ......+.+.+++.++|+|+++++++++|+.|||+|+|+.
T Consensus 238 YG~TE~~~~~~~~~~-------~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~ 292 (436)
T 3qov_A 238 FGMTEMNGPGVAFEC-------QEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLD 292 (436)
T ss_dssp EEEGGGTEEEEEEEC-------TTCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESS
T ss_pred CcchhhcCCeeEEec-------CCCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccC
Confidence 999999544222211 1123367777899999999999999999999999999854
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=7.5e-36 Score=251.84 Aligned_cols=219 Identities=24% Similarity=0.383 Sum_probs=182.1
Q ss_pred CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504 18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG 97 (240)
Q Consensus 18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~ 97 (240)
.....++|+++|+|||||||.||+|.++|+++.......... .+++.++|+++..+|++|..++...++.++..|.+
T Consensus 170 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~ 246 (576)
T 3gqw_A 170 LQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHD---GIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLS 246 (576)
T ss_dssp CCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHT---TSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCC
T ss_pred cCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhc---ccCCCCcceEEEcCCccccccHHHHHHHHHhcCce
Confidence 345668999999999999999999999999998887765432 24688999999999999999998778888999999
Q ss_pred EEEccC----CCHHHHHHHHHhccceeeeechHHHHHHHhCCCC---CCCCccchhhhhccCCCCCHHHHHHHHHhCC--
Q 039504 98 VLLMQK----FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV---ADYDLSSIRVVLSGAAPLGKELEDALRSRVP-- 168 (240)
Q Consensus 98 ~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~---~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~-- 168 (240)
+++.+. +++..+++.++++++|++.++|++++.+.+.... ....++++|.+++||+++++++.+++.+.|+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~ 326 (576)
T 3gqw_A 247 VDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQV 326 (576)
T ss_dssp EEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGG
T ss_pred EEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHHHHHHHHhhc
Confidence 988764 6889999999999999999999999888765543 2356788999999999999999999999875
Q ss_pred ---CCcccccccccccccchhhccCCCCC------------------C-----CCCCCCccccccCCceEEEeeCCCCCC
Q 039504 169 ---QAILGQGYGMTEAGPVLSMCLGFAKQ------------------P-----FPTKSGSCGTVVRNAELKVIDPETGAS 222 (240)
Q Consensus 169 ---~~~i~~~yG~tE~~~~~~~~~~~~~~------------------~-----~~~~~~~~G~~~~~~~v~i~d~~~~~~ 222 (240)
+.++++.||+||++.++..+...... . ......++|+|+|+++++|+| +++++
T Consensus 327 ~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~ 405 (576)
T 3gqw_A 327 NFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGMP 405 (576)
T ss_dssp TCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSCB
T ss_pred CCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCCC
Confidence 67899999999998776554211000 0 000112789999999999999 88999
Q ss_pred CCCCCCceEEEeCCCCCC
Q 039504 223 LPHNQPGEICIRGPQIMK 240 (240)
Q Consensus 223 ~~~g~~Gel~v~~~~~~~ 240 (240)
++.|++|||+|+||.+++
T Consensus 406 ~~~g~~GEl~v~g~~~~~ 423 (576)
T 3gqw_A 406 VAERVVGHICISGPSLMS 423 (576)
T ss_dssp CCTTBCEEEEEESTTSCC
T ss_pred CCCCCeEEEEEeCccccc
Confidence 999999999999999874
No 30
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=7.6e-36 Score=250.79 Aligned_cols=204 Identities=21% Similarity=0.313 Sum_probs=168.7
Q ss_pred CCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504 20 AIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL 99 (240)
Q Consensus 20 ~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v 99 (240)
...++|+++++|||||||.||+|.++|+++......... .+++.++|+++..+|++|..++. .++.++..|++++
T Consensus 178 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v 252 (563)
T 1amu_A 178 PSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFEN----SLNVTEKDRIGQFASISFDASVW-EMFMALLTGASLY 252 (563)
T ss_dssp CCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHH----TSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEE
T ss_pred CCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHH----hcCCCCCCEEEEeCCccHHHHHH-HHHHHHHCCCEEE
Confidence 456789999999999999999999999999887766655 45678999999999999998886 6778999999999
Q ss_pred EccC---CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccc
Q 039504 100 LMQK---FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGY 176 (240)
Q Consensus 100 ~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y 176 (240)
+.+. +++..+++.++++++|++.++|+++..+... .++++|.+++||+++++++.+++++. +++++.|
T Consensus 253 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~~~~Y 323 (563)
T 1amu_A 253 IILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK---VTYINAY 323 (563)
T ss_dssp ECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT---SEEEEEE
T ss_pred EcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC---CeEEEEE
Confidence 8865 7899999999999999999999998877542 35789999999999999999999873 6899999
Q ss_pred cccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504 177 GMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240 (240)
Q Consensus 177 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~ 240 (240)
|+||++..+...... ........++|+|+|+++++|+| +++++++.|+.|||+|+||++++
T Consensus 324 G~TE~~~~~~~~~~~--~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~ 384 (563)
T 1amu_A 324 GPTETTICATTWVAT--KETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLAR 384 (563)
T ss_dssp CCGGGSSCSEEEECC--SSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCC
T ss_pred CcCHHhHhheeeecc--cccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhCh
Confidence 999998665543211 11123456899999999999999 67999999999999999999874
No 31
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=6.8e-36 Score=248.18 Aligned_cols=203 Identities=25% Similarity=0.413 Sum_probs=174.3
Q ss_pred CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceE
Q 039504 19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGV 98 (240)
Q Consensus 19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~ 98 (240)
...+++|+++++|||||||.||+|.++|.++......... .+++.++|++++.+|++|.+++. .++.++..|+++
T Consensus 158 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~g~~-~~~~~l~~G~~~ 232 (501)
T 3ipl_A 158 TSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE----SLGFDRDTNWLSVLPIYHISGLS-VLLRAVIEGFTV 232 (501)
T ss_dssp CCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH----HTCCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCEE
T ss_pred cCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH----hhCCCccCEEEEeCcHHHHHHHH-HHHHHHHcCceE
Confidence 3467899999999999999999999999999888877665 44678999999999999999997 578899999999
Q ss_pred EEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccccc
Q 039504 99 LLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGM 178 (240)
Q Consensus 99 v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~ 178 (240)
++.++++++.+++.++++++|++.++|++++.|.+....... ++|.+++||+++++++.+++.+ + ++++++.||+
T Consensus 233 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---~lr~i~~gG~~l~~~~~~~~~~-~-~~~~~~~YG~ 307 (501)
T 3ipl_A 233 RIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPY---NLQKILLGGAKLSATMIETALQ-Y-NLPIYNSFGM 307 (501)
T ss_dssp EECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCT---TCCEEEECSSCCCHHHHHHHHH-T-TCCEEEEEEE
T ss_pred EeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcC---cccEEEEeCCCCCHHHHHHHHH-h-CCCEeccccc
Confidence 999999999999999999999999999999999887654332 7899999999999999999988 4 8899999999
Q ss_pred cccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504 179 TEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240 (240)
Q Consensus 179 tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~ 240 (240)
||++..+..+.. ........++|+|.++++++|+|++ .|+.|||+|+|+.+++
T Consensus 308 TE~~~~~~~~~~---~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~ 360 (501)
T 3ipl_A 308 TETCSQFLTATP---EMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMN 360 (501)
T ss_dssp GGGTEEEEEECH---HHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCS
T ss_pred cccccceeecCc---cccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhh
Confidence 999865444311 1112356789999999999999954 5678999999999874
No 32
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=2.1e-35 Score=241.38 Aligned_cols=210 Identities=24% Similarity=0.237 Sum_probs=168.8
Q ss_pred CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecch-HHhhhhHHHHHHHhhcCc
Q 039504 18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPL-FHIYSLNSVLLCSLRAGA 96 (240)
Q Consensus 18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~~~~g~~~~~~~~l~~G~ 96 (240)
...+.++++++++|||||||.||+|.++|.++..........+. .++++++|+++..+|+ +|..++. ..+.++..|+
T Consensus 84 ~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~G~ 161 (437)
T 2y27_A 84 MFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIR-AAGARRGDKVHVSYGYGLFTGGLG-AHYGAERAGL 161 (437)
T ss_dssp TCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHH-HTTCCTTCEEEECSCCSSSHHHHH-HHHHHHHTTC
T ss_pred cccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHH-HcCCCCCCEEEEcccccccccchH-HHHHHHHcCC
Confidence 34567789999999999999999999999998766543322110 2467899999999998 5666665 5788899999
Q ss_pred eEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCC--ccchhhhhccCCCCCHHHHHHHHHhCCCCcccc
Q 039504 97 GVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYD--LSSIRVVLSGAAPLGKELEDALRSRVPQAILGQ 174 (240)
Q Consensus 97 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~--~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~ 174 (240)
++++.+.++++.+++.++++++|++.++|+++..|.+.....+.. ++++|.+++||+++++++++++++.| ++++++
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~ 240 (437)
T 2y27_A 162 TVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVD 240 (437)
T ss_dssp EEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEe
Confidence 999888889999999999999999999999999998764433332 46899999999999999999999998 899999
Q ss_pred cccccccccc-hhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCC
Q 039504 175 GYGMTEAGPV-LSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQ 237 (240)
Q Consensus 175 ~yG~tE~~~~-~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~ 237 (240)
.||+||+++. +.... .. .....+.+.+++.++|+|++++++++.|+.|||+|+|..
T Consensus 241 ~YG~TE~~g~~~~~~~----~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~t 297 (437)
T 2y27_A 241 IYGLSEVMGPGVASEC----VE---TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSLT 297 (437)
T ss_dssp EEEETTTTEEEEEECC----TT---TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESS
T ss_pred cCCchhhcCCeeEEec----CC---CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecCC
Confidence 9999998432 22211 10 111356677899999999888999999999999999843
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=3.1e-35 Score=240.72 Aligned_cols=209 Identities=22% Similarity=0.231 Sum_probs=167.5
Q ss_pred CCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecch-HHhhhhHHHHHHHhhcCce
Q 039504 19 VAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPL-FHIYSLNSVLLCSLRAGAG 97 (240)
Q Consensus 19 ~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~~~~g~~~~~~~~l~~G~~ 97 (240)
..+.++++++++|||||||.||+|.++|.++..........+. .+++.++|+++..+|+ +|..++. ..+.++..|++
T Consensus 87 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~-~~~~~~~d~~l~~~~~~~~~~~~~-~~~~~~~~G~~ 164 (443)
T 2y4o_A 87 FAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIR-AAGGRPGDTLHNAFGYGLFTGGLG-IHYGAERLGCM 164 (443)
T ss_dssp CSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHH-HTTCCTTCEEEECSCCSSSHHHHH-HHHHHHHHTCE
T ss_pred cCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHH-HcCCCCCCEEEEeccCcccccHHH-HHHHHHHcCCE
Confidence 4457789999999999999999999999998765543322110 2467899999999998 4555554 67888999999
Q ss_pred EEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCC--ccchhhhhccCCCCCHHHHHHHHHhCCCCccccc
Q 039504 98 VLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYD--LSSIRVVLSGAAPLGKELEDALRSRVPQAILGQG 175 (240)
Q Consensus 98 ~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~--~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~ 175 (240)
+++.+.++++.+++.++++++|++.++|+++..|++.....+.. ++++|.+++||+++++++++++++.| ++++++.
T Consensus 165 ~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~ 243 (443)
T 2y4o_A 165 VVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDI 243 (443)
T ss_dssp EECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEE
T ss_pred EEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEec
Confidence 99988889999999999999999999999999998764433332 47899999999999999999999999 8999999
Q ss_pred ccccccccc-hhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCC
Q 039504 176 YGMTEAGPV-LSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQ 237 (240)
Q Consensus 176 yG~tE~~~~-~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~ 237 (240)
||+||+++. +.... . ......+.+.+++.++|+|+++++++++|+.|||+|+|..
T Consensus 244 YG~TE~~g~~~~~~~----~---~~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~t 299 (443)
T 2y4o_A 244 YGLSEVMGPGVACEC----V---ETKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSLT 299 (443)
T ss_dssp EEETTTTEEEEEEEC----T---TTCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESS
T ss_pred cCchhhcCCeEEecc----C---CCCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCCC
Confidence 999997432 22211 1 0111245567899999999888999999999999999843
No 34
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.5e-34 Score=262.66 Aligned_cols=212 Identities=24% Similarity=0.313 Sum_probs=178.6
Q ss_pred CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504 18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG 97 (240)
Q Consensus 18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~ 97 (240)
.....|+|+++|+|||||||.||||.++|+++.+. ..... .+++.++|+++...|+.|..+.+ .++.++..|++
T Consensus 601 ~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~----~~~~~~~d~~l~~~~~~fd~~~~-~~~~~l~~G~~ 674 (1304)
T 2vsq_A 601 ATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVD----YMAFSDQDTFLSVSNYAFDAFTF-DFYASMLNAAR 674 (1304)
T ss_dssp CCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCC----SSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCE
T ss_pred CCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHH----hcCCCCCCEEEEECCccHHHHHH-HHHHHHHcCCE
Confidence 34567899999999999999999999999998765 33222 55788999999999998887776 67889999999
Q ss_pred EEEccC---CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccc
Q 039504 98 VLLMQK---FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQ 174 (240)
Q Consensus 98 ~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~ 174 (240)
+++.+. .++..+.+.++++++|++.++|++++.+.+.. ...++++|.+++|||++++++.+++.+.+++.+++|
T Consensus 675 l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n 751 (1304)
T 2vsq_A 675 LIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMKGLRCILFGGERASVPHVRKALRIMGPGKLIN 751 (1304)
T ss_dssp EEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEE
T ss_pred EEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEE
Confidence 999864 79999999999999999999999999998653 224578999999999999999999999887789999
Q ss_pred cccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504 175 GYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240 (240)
Q Consensus 175 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~ 240 (240)
.||+||++..+....... ........++|+|+++++++|+| ++++++|.|++|||+|+|++|++
T Consensus 752 ~YG~TE~~~~~~~~~~~~-~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~ 815 (1304)
T 2vsq_A 752 CYGPTEGTVFATAHVVHD-LPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSK 815 (1304)
T ss_dssp EECCGGGSSCSEEEECCC-CCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCC
T ss_pred eEChhHHhHHheeeeccC-ccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCc
Confidence 999999987665442211 11223456899999999999999 66999999999999999999975
No 35
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.7e-34 Score=242.91 Aligned_cols=213 Identities=18% Similarity=0.184 Sum_probs=171.9
Q ss_pred CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcC----CCCCccccCCcEEEEecchHHhhhhHHHHHHHhh
Q 039504 18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDG----ENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLR 93 (240)
Q Consensus 18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~----~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~ 93 (240)
.....++++++|+|||||||.||+|.++|.++......+... ....+.+...+++++..|+.|..++. .++.++.
T Consensus 169 ~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ 247 (562)
T 3ite_A 169 LNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIG-EMFLAWR 247 (562)
T ss_dssp CCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHH-HHHHHHH
T ss_pred ccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHH-HHHHHHh
Confidence 344567889999999999999999999999998776553321 11123467789999999998887776 5678889
Q ss_pred cCceEEEccCCC-HHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcc
Q 039504 94 AGAGVLLMQKFE-IGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAIL 172 (240)
Q Consensus 94 ~G~~~v~~~~~~-~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i 172 (240)
.|+++++.+.+. +..+++.++++++|++.++|++++.+... ...++++|.+++||+++++++.+++++.+ ++++
T Consensus 248 ~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~ 322 (562)
T 3ite_A 248 FGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQQIWSSSD-RVAL 322 (562)
T ss_dssp TTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHHHHHTTCS-SCEE
T ss_pred cccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHHHHHhhCC-CcEE
Confidence 999998876543 57788999999999999999999887443 34677899999999999999999999877 8999
Q ss_pred cccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504 173 GQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK 240 (240)
Q Consensus 173 ~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~ 240 (240)
++.||+||++..+..... .......++|+|.++++++|+|++++++++.|+.|||+|+||.+++
T Consensus 323 ~~~YG~TE~~~~~~~~~~----~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~ 386 (562)
T 3ite_A 323 VNVYGPTEVTIGCSAGRI----LPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVAN 386 (562)
T ss_dssp EEEECCGGGCSCSEEEEC----CTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCC
T ss_pred EEeeccchheeeeeeeee----cCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccch
Confidence 999999999876655421 1233457899999999999999888999999999999999999874
No 36
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=4.6e-33 Score=221.52 Aligned_cols=188 Identities=21% Similarity=0.230 Sum_probs=157.2
Q ss_pred CCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC
Q 039504 24 DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK 103 (240)
Q Consensus 24 ~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~ 103 (240)
+|+++|+|||||||.||+|.++|+++......... .++++++|++++.+|++|++|+. .++.++..|+++++.++
T Consensus 37 d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~gl~-~~~~~l~~g~~~~~~~~ 111 (358)
T 4gs5_A 37 GAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGK----ALSLGPGTRALVCLNVGYIAGLM-MLVRGMELDWELTVTEP 111 (358)
T ss_dssp TCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCEEEEECC
T ss_pred CCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHH----HhCCCCCCEEEEECChHHHHHHH-HHHHHHHhCcEEEecCc
Confidence 68999999999999999999999999988877666 45689999999999999999987 56777888888877654
Q ss_pred -CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccccccccc
Q 039504 104 -FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAG 182 (240)
Q Consensus 104 -~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~ 182 (240)
.+ .++.++++++|++.++|++++.|++.... ...++++|.+++||+++++++.+++++. ++++++.||+||++
T Consensus 112 ~~~---~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~ 185 (358)
T 4gs5_A 112 TAN---PLAGLDHADFDFVAMVPMQLQSILENSAT-SGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETV 185 (358)
T ss_dssp CSC---TTTTCSSCCCSEEEECHHHHHHHHHCTTT-GGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGS
T ss_pred ccc---HHHHHHHhCCeEEEcChHHHHHhhccccc-cccCCcceEEEEcccCCCchheeccccc--CceEEecccccccc
Confidence 33 36678899999999999999999987654 4478899999999999999999999874 78999999999998
Q ss_pred cchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCC
Q 039504 183 PVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQI 238 (240)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~ 238 (240)
..+..... .....+.+|.+.|++.+.+.+ .|||+++|+.+
T Consensus 186 ~~~~~~~~-----~~~~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~~ 225 (358)
T 4gs5_A 186 SHVALKAL-----NGPEASELYVFLPGIQYGVDE-----------RGCLHISGAVT 225 (358)
T ss_dssp SEEEEEEC-----SSTTCCSCEEECTTCEEEECT-----------TSEEEEESGGG
T ss_pred ceeecccc-----cccccceeeccCCCeEEEecC-----------cCceEEecccc
Confidence 76665422 233457889999999887744 39999998753
No 37
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=97.30 E-value=0.00033 Score=58.48 Aligned_cols=31 Identities=29% Similarity=0.287 Sum_probs=25.5
Q ss_pred CCCCCcEEEecCCCCC-CCCceeeeehHHHHH
Q 039504 21 IEPDDPVALPFSSGTT-GLPKGVVLTHKSLIT 51 (240)
Q Consensus 21 ~~~~~~~~i~~TSGtT-G~pk~v~~s~~~l~~ 51 (240)
..++.+.+...||||| |.+|.+++|...+..
T Consensus 90 L~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~ 121 (581)
T 4eql_A 90 ISARTITGFLLSSGTSGGAQKMMPWNNKYLDN 121 (581)
T ss_dssp TCSSCCCEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred cCCCCCCeEEeCCCCCCCCccccccCHHHHHH
Confidence 4566667888899999 679999999998755
No 38
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=97.13 E-value=0.0003 Score=58.94 Aligned_cols=32 Identities=22% Similarity=0.141 Sum_probs=26.5
Q ss_pred CCCCCCcEEEecCCCCC-CCCceeeeehHHHHH
Q 039504 20 AIEPDDPVALPFSSGTT-GLPKGVVLTHKSLIT 51 (240)
Q Consensus 20 ~~~~~~~~~i~~TSGtT-G~pk~v~~s~~~l~~ 51 (240)
.+.++.+.+...||||| |.||.+++|...+..
T Consensus 95 il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~ 127 (609)
T 4b2g_A 95 ILSAHPISEFLTSSGTSAGERKLMPTIQEELDR 127 (609)
T ss_dssp SSCSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred ccCCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence 34566777899999999 789999999998755
No 39
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=93.11 E-value=0.43 Score=39.58 Aligned_cols=98 Identities=16% Similarity=0.156 Sum_probs=71.8
Q ss_pred CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504 22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM 101 (240)
Q Consensus 22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 101 (240)
.|+.++.+....| -.+|...+......+...+. ..++.++|++..+++.... +...+++++..|+..+..
T Consensus 35 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~~--~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 35 HSSKPCLINGANG-------DVYTYADVELTARRVASGLN-KIGIQQGDVIMLFLPSSPE--FVLAFLGASHRGAIITAA 104 (536)
T ss_dssp STTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHH--HHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEECCCC-------CEEEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcHH--HHHHHHHHHHhCCEEecc
Confidence 3566666543222 35788888887766665443 3588999999998886543 334678999999998887
Q ss_pred cC-CCHHHHHHHHHhccceeeeechHHHH
Q 039504 102 QK-FEIGALLELIQRHRVSVAAVVPPLVL 129 (240)
Q Consensus 102 ~~-~~~~~~~~~i~~~~~t~l~~~p~~~~ 129 (240)
.+ ...+++...+++.++.++++......
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~ 133 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYYE 133 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGTH
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHHH
Confidence 64 78899999999999999988765443
No 40
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=92.83 E-value=0.79 Score=38.06 Aligned_cols=101 Identities=13% Similarity=0.050 Sum_probs=73.2
Q ss_pred CCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc
Q 039504 23 PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ 102 (240)
Q Consensus 23 ~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 102 (240)
|+.++.+....+ ....+|..++...+..+...+. ..++.++|++..+++.... +...+++++..|+..+...
T Consensus 32 p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpl~ 103 (541)
T 1v25_A 32 GRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLR-ALGVGVGDRVATLGFNHFR--HLEAYFAVPGMGAVLHTAN 103 (541)
T ss_dssp TTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECC
T ss_pred CCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcHH--HHHHHHHHHhcCcEEEecC
Confidence 455565543211 2346889998887766655443 4578999999998885543 3346789999999998876
Q ss_pred -CCCHHHHHHHHHhccceeeeechHHHHHH
Q 039504 103 -KFEIGALLELIQRHRVSVAAVVPPLVLAL 131 (240)
Q Consensus 103 -~~~~~~~~~~i~~~~~t~l~~~p~~~~~l 131 (240)
....+++...+++.++.++++.+.....+
T Consensus 104 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 104 PRLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred cccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 47889999999999999999887765444
No 41
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=92.79 E-value=0.78 Score=38.17 Aligned_cols=104 Identities=9% Similarity=0.068 Sum_probs=73.7
Q ss_pred CCCcEEEecCCC-CCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504 23 PDDPVALPFSSG-TTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM 101 (240)
Q Consensus 23 ~~~~~~i~~TSG-tTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 101 (240)
|+.++++....+ ..+. .-.+|...+......+...+. ..++.++|++..+++-... +...+++++..|+..+..
T Consensus 33 p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 33 GEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGIS-RKGVRKGEHVGVCIPNSID--YVMTIYALWRVAATPVPI 107 (549)
T ss_dssp TTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEEC
T ss_pred CCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHH--HHHHHHHHHHhCCEEEcc
Confidence 556666554321 1122 245788888877766655443 4578999999998886543 334678999999999888
Q ss_pred cC-CCHHHHHHHHHhccceeeeechHHHHHH
Q 039504 102 QK-FEIGALLELIQRHRVSVAAVVPPLVLAL 131 (240)
Q Consensus 102 ~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l 131 (240)
.+ ...+++..++++.+++.+++.......+
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~ 138 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLYENF 138 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 64 7788999999999999998887655544
No 42
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=92.77 E-value=0.53 Score=38.69 Aligned_cols=86 Identities=15% Similarity=0.071 Sum_probs=67.4
Q ss_pred eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC-CCHHHHHHHHHhcccee
Q 039504 42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK-FEIGALLELIQRHRVSV 120 (240)
Q Consensus 42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~ 120 (240)
..+|..++...+..+...+. ..++.++|++..+++.... +...+++++..|+..+..++ ...+++...+++.++.+
T Consensus 30 ~~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~ 106 (509)
T 3ivr_A 30 VRLTHRDYLARAERLASGLL-RDGVHTGDRVAILSQNCSE--MIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSV 106 (509)
T ss_dssp EEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSCHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEE
T ss_pred cEEcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHH--HHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceE
Confidence 46899999888776665443 3578999999998886543 33467899999999998864 78899999999999999
Q ss_pred eeechHHHHH
Q 039504 121 AAVVPPLVLA 130 (240)
Q Consensus 121 l~~~p~~~~~ 130 (240)
+++.......
T Consensus 107 vi~~~~~~~~ 116 (509)
T 3ivr_A 107 VVAGTDYRDI 116 (509)
T ss_dssp EEECSTTHHH
T ss_pred EEECcchhhh
Confidence 9988766554
No 43
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=91.94 E-value=0.27 Score=40.97 Aligned_cols=88 Identities=13% Similarity=0.053 Sum_probs=67.8
Q ss_pred eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhcccee
Q 039504 42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSV 120 (240)
Q Consensus 42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 120 (240)
..+|...+......+...+. ..++.++|++..+++.... +...+++++..|+..+... ....+++...+++.++++
T Consensus 49 ~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ 125 (550)
T 3rix_A 49 VNITYAEYFEMSVRLAEAMK-RYGLNTNHRIVVCSENSLQ--FFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTV 125 (550)
T ss_dssp CEEEHHHHHHHHHHHHHHHH-HHTCCTTCEEEEECSSCTT--THHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred cEeEHHHHHHHHHHHHHHHH-HhCCCCCCEEEEEcCCccc--HHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeE
Confidence 35889998887776665443 4578999999998885433 3346789999999998876 478899999999999999
Q ss_pred eeechHHHHHHH
Q 039504 121 AAVVPPLVLALA 132 (240)
Q Consensus 121 l~~~p~~~~~l~ 132 (240)
+++....+..+.
T Consensus 126 vi~~~~~~~~~~ 137 (550)
T 3rix_A 126 VFVSKKGLQKIL 137 (550)
T ss_dssp EEECGGGHHHHH
T ss_pred EEEcHHHHHHHH
Confidence 998876655443
No 44
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=91.91 E-value=1.2 Score=36.18 Aligned_cols=106 Identities=15% Similarity=0.092 Sum_probs=75.3
Q ss_pred CCCCcEEEecCC--CCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504 22 EPDDPVALPFSS--GTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL 99 (240)
Q Consensus 22 ~~~~~~~i~~TS--GtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v 99 (240)
.|+.++++.... +.+| ....+|..++...+..+...+. ..+. ++|++..+++.... +...+++++..|+..+
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~-~~g~-~gd~V~i~~~n~~e--~~~~~lA~~~~G~v~v 110 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELS-RCGS-TGDRVVISAPQGLE--YVVAFLGALQAGRIAV 110 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHT-TSSC-TTCEEEEECCSSHH--HHHHHHHHHHTTCEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHH-hcCC-CCCEEEEEcCCcHH--HHHHHHHHHHhCcEEE
Confidence 356666665432 2222 3357899999888877776655 3455 89999988875543 3346789999999988
Q ss_pred EccC----CCHHHHHHHHHhccceeeeechHHHHHHHh
Q 039504 100 LMQK----FEIGALLELIQRHRVSVAAVVPPLVLALAK 133 (240)
Q Consensus 100 ~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~ 133 (240)
.... ...+++..++++.++.+++........+..
T Consensus 111 pl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 111 PLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp EECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred eeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 8753 456788999999999999998876665544
No 45
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=91.69 E-value=0.71 Score=38.68 Aligned_cols=104 Identities=19% Similarity=0.194 Sum_probs=74.9
Q ss_pred CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504 22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM 101 (240)
Q Consensus 22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 101 (240)
.|+.++.+.... .| ....+|...+...+..+...+...+++.++|++..+++.... +...+++++..|+..+..
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Ga~~vpl 129 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPE--WWLVILGCIRAGLIFMPG 129 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHH--HHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCeEEEec
Confidence 456666655321 11 235689999888877666655433388999999998886543 334578999999998887
Q ss_pred cC-CCHHHHHHHHHhccceeeeechHHHHHH
Q 039504 102 QK-FEIGALLELIQRHRVSVAAVVPPLVLAL 131 (240)
Q Consensus 102 ~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l 131 (240)
.. ...+++...+++.++..+++.+.....+
T Consensus 130 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 160 (570)
T 3c5e_A 130 TIQMKSTDILYRLQMSKAKAIVAGDEVIQEV 160 (570)
T ss_dssp CTTCCHHHHHHHHHHHTCSEEEEETTTHHHH
T ss_pred CCCCCHHHHHHHHHhcCCeEEEechHHHHHH
Confidence 64 7788999999999999998877665544
No 46
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=91.53 E-value=1.1 Score=36.80 Aligned_cols=87 Identities=24% Similarity=0.195 Sum_probs=64.3
Q ss_pred eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC-CCHHHHHHHHHhcccee
Q 039504 42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK-FEIGALLELIQRHRVSV 120 (240)
Q Consensus 42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~ 120 (240)
..+|..++......+...+. ..++.++|++..+++.... +...+++++..|+..+..++ ...+++...+++.+++.
T Consensus 28 ~~~Ty~el~~~~~~~A~~L~-~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 104 (504)
T 1t5h_X 28 LRLTHAELRARVEAVAARLH-ADGLRPQQRVAVVAPNSAD--VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTA 104 (504)
T ss_dssp EEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSCHH--HHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSE
T ss_pred ceeEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHH--HHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcE
Confidence 46899998887766655443 3578999999998886543 33467899999999888764 77889999999999998
Q ss_pred eee--chHHHHHH
Q 039504 121 AAV--VPPLVLAL 131 (240)
Q Consensus 121 l~~--~p~~~~~l 131 (240)
++. .+.....+
T Consensus 105 ~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 105 AVIAVGRQVADAI 117 (504)
T ss_dssp EEECC--CHHHHH
T ss_pred EEEecchhhhhhh
Confidence 887 55544443
No 47
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=91.11 E-value=1.2 Score=38.14 Aligned_cols=100 Identities=21% Similarity=0.227 Sum_probs=71.7
Q ss_pred CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504 22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM 101 (240)
Q Consensus 22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 101 (240)
.|+.++++.... ..| ....+|..++...+..+...+....++.++|++..++|.... +...+++++..|+..+..
T Consensus 95 ~pd~~Al~~~~~-~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e--~v~a~lA~~~~Gav~vpl 169 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPE--AIITLLAISRIGAIHSVV 169 (663)
T ss_dssp CTTSEEEEEECS-STT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHH--HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCEEEee
Confidence 356666665422 112 234688999888877766544313478999999999986543 333578999999888887
Q ss_pred c-CCCHHHHHHHHHhccceeeeechH
Q 039504 102 Q-KFEIGALLELIQRHRVSVAAVVPP 126 (240)
Q Consensus 102 ~-~~~~~~~~~~i~~~~~t~l~~~p~ 126 (240)
. .+..+++...+++.++.++++...
T Consensus 170 ~~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 170 FAGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEccc
Confidence 5 588999999999999998887543
No 48
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=90.68 E-value=1.3 Score=37.03 Aligned_cols=86 Identities=14% Similarity=0.035 Sum_probs=65.5
Q ss_pred eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC-CCHHHHHHHHHhcccee
Q 039504 42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK-FEIGALLELIQRHRVSV 120 (240)
Q Consensus 42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~ 120 (240)
..+|...+...+..+...+. ..++.++|++..+++.... +...+++++..|+..+...+ ...+++..++++.++..
T Consensus 63 ~~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~ 139 (563)
T 1amu_A 63 EQLTYHELNVKANQLARIFI-EKGIGKDTLVGIMMEKSID--LFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARM 139 (563)
T ss_dssp EEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSE
T ss_pred ceecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCE
Confidence 35888888877766555433 3478999999988886543 33467899999999988764 77889999999999999
Q ss_pred eeechHHHHH
Q 039504 121 AAVVPPLVLA 130 (240)
Q Consensus 121 l~~~p~~~~~ 130 (240)
++..+.....
T Consensus 140 li~~~~~~~~ 149 (563)
T 1amu_A 140 LLTQKHLVHL 149 (563)
T ss_dssp EEECGGGHHH
T ss_pred EEEcCchhhh
Confidence 9887765443
No 49
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=90.56 E-value=0.66 Score=38.34 Aligned_cols=85 Identities=14% Similarity=0.087 Sum_probs=65.2
Q ss_pred eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC-CCHHHHHHHHHhccceee
Q 039504 43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK-FEIGALLELIQRHRVSVA 121 (240)
Q Consensus 43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l 121 (240)
.+|..++...+..+...+. ..++.++|++..+++.... +...+++++..|+..+.... ..++++...+++.++..+
T Consensus 48 ~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 124 (529)
T 2v7b_A 48 STTYGELEERARRFASALR-TLGVHPEERILLVMLDTVA--LPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAV 124 (529)
T ss_dssp EEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSTH--HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEE
T ss_pred CccHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcHH--HHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEE
Confidence 5888888887766655443 4578999999998886543 33457899999999888764 788999999999999998
Q ss_pred eechHHHHH
Q 039504 122 AVVPPLVLA 130 (240)
Q Consensus 122 ~~~p~~~~~ 130 (240)
++.+.....
T Consensus 125 i~~~~~~~~ 133 (529)
T 2v7b_A 125 IASGALVQN 133 (529)
T ss_dssp EEEGGGHHH
T ss_pred EechhhhhH
Confidence 887765443
No 50
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=90.51 E-value=1.3 Score=37.23 Aligned_cols=97 Identities=13% Similarity=0.093 Sum_probs=72.0
Q ss_pred CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504 22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM 101 (240)
Q Consensus 22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 101 (240)
.|+.++++..... | ....+|...+......+...+. ..++.++|++..+++.... +...+++++..|+..+..
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~-~~Gv~~Gd~V~l~~~~~~e--~~~~~lA~~~~Gav~vpl 141 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFV-KHGIGKGDYVMLTLKSRYD--FWYCMLGLHKLGAIAVPA 141 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECTTCTH--HHHHHHHHHHHTCEEEEC
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHH--HHHHHHHHHhCCEEEEeC
Confidence 4677777654321 1 2356888888887766665443 4588999999998885443 444678999999999887
Q ss_pred c-CCCHHHHHHHHHhccceeeeech
Q 039504 102 Q-KFEIGALLELIQRHRVSVAAVVP 125 (240)
Q Consensus 102 ~-~~~~~~~~~~i~~~~~t~l~~~p 125 (240)
. ....+++...+++.++..+++..
T Consensus 142 ~~~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 142 THMLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp CTTCCHHHHHHHHHHHTCCEEEEES
T ss_pred CccCCHHHHHHHHHhcCCCEEEEec
Confidence 6 47889999999999999888754
No 51
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=90.06 E-value=0.79 Score=41.14 Aligned_cols=96 Identities=17% Similarity=0.141 Sum_probs=70.7
Q ss_pred CCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc
Q 039504 23 PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ 102 (240)
Q Consensus 23 ~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 102 (240)
|+.++.+...+| ..+|..++......+...+. ..++.++|++..+++.... +...+++++..|+..+...
T Consensus 75 pd~~Al~~~~~~-------~~~TY~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~ns~e--~~v~~lA~~~~Ga~~vpl~ 144 (979)
T 3tsy_A 75 ATKPCLINGPTG-------HVYTYSDVHVISRQIAANFH-KLGVNQNDVVMLLLPNCPE--FVLSFLAASFRGATATAAN 144 (979)
T ss_dssp TTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECSSCHH--HHHHHHHHHHHTCEEEEEC
T ss_pred CCCeEEEECCCC-------cEEEHHHHHHHHHHHHHHHH-HcCCCCcCEEEEEeCCCHH--HHHHHHHHHHcCCEEEeeC
Confidence 566666543222 35788888887766655443 4578999999998886533 3346789999999988876
Q ss_pred -CCCHHHHHHHHHhccceeeeechHHH
Q 039504 103 -KFEIGALLELIQRHRVSVAAVVPPLV 128 (240)
Q Consensus 103 -~~~~~~~~~~i~~~~~t~l~~~p~~~ 128 (240)
...++++...+++.++.++++.....
T Consensus 145 ~~~~~~~l~~~l~~~~~~~vi~~~~~~ 171 (979)
T 3tsy_A 145 PFFTPAEIAKQAKASNTKLIITEARYV 171 (979)
T ss_dssp TTSCHHHHHHHHHHHTEEEEEECSTTT
T ss_pred CCCCHHHHHHHHHHcCCeEEEEChHHH
Confidence 47889999999999999998876543
No 52
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=89.70 E-value=1.7 Score=37.11 Aligned_cols=97 Identities=18% Similarity=0.166 Sum_probs=69.5
Q ss_pred CCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc
Q 039504 23 PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ 102 (240)
Q Consensus 23 ~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 102 (240)
|+.++++.... .+| ....+|...+...+..+...+. ..++.++|++..++|..... ...+++++..|+..+...
T Consensus 90 pd~~Al~~~~~-~~~--~~~~lTY~eL~~~v~~lA~~L~-~~Gv~~Gd~V~i~~~~~~e~--vva~lA~~~~Gav~vpl~ 163 (652)
T 1pg4_A 90 GDRTAIIWEGD-DTS--QSKHISYRELHRDVCRFANTLL-DLGIKKGDVVAIYMPMVPEA--AVAMLACARIGAVHSVIF 163 (652)
T ss_dssp TTSEEEEEECS-STT--CEEEEEHHHHHHHHHHHHHHHH-HHTCCTTCEEEEECCSSHHH--HHHHHHHHHHTCEEEECC
T ss_pred CCceEEEEEcC-CCC--ceeEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCHHH--HHHHHHHHHcCcEEEecC
Confidence 55566654321 112 2346889998887776665443 45789999999999865443 335788999998888875
Q ss_pred -CCCHHHHHHHHHhccceeeeech
Q 039504 103 -KFEIGALLELIQRHRVSVAAVVP 125 (240)
Q Consensus 103 -~~~~~~~~~~i~~~~~t~l~~~p 125 (240)
.+.++++...+++.++.++++..
T Consensus 164 ~~~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 164 GGFSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCCHHHHHHHHHhcCCCEEEEcC
Confidence 58889999999999999887753
No 53
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=89.39 E-value=1.7 Score=36.33 Aligned_cols=81 Identities=20% Similarity=0.193 Sum_probs=63.5
Q ss_pred eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC-CCHHHHHHHHHhccceee
Q 039504 43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK-FEIGALLELIQRHRVSVA 121 (240)
Q Consensus 43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l 121 (240)
.+|...+...+..+...+. ..++.++|++..+++.... +...+++++..|+..+...+ ...+++..++++.++.++
T Consensus 100 ~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~ 176 (570)
T 4gr5_A 100 ELTYGALNERANRLAHRLV-GLGVAPGTLVGVHLERGFD--MVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLL 176 (570)
T ss_dssp EEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred cEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCHH--HHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEE
Confidence 5889998887776665443 3578999999998886543 33467899999999988864 788999999999999988
Q ss_pred eechH
Q 039504 122 AVVPP 126 (240)
Q Consensus 122 ~~~p~ 126 (240)
++...
T Consensus 177 i~~~~ 181 (570)
T 4gr5_A 177 VTSRP 181 (570)
T ss_dssp EECTT
T ss_pred Eecch
Confidence 87654
No 54
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=89.36 E-value=0.68 Score=38.54 Aligned_cols=87 Identities=9% Similarity=0.010 Sum_probs=66.3
Q ss_pred eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhcccee
Q 039504 42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSV 120 (240)
Q Consensus 42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 120 (240)
..+|..++...+..+...+. ..++.++|++..+++.... +...+++++..|+..+... ....+++...+++.++.+
T Consensus 51 ~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~e--~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ 127 (548)
T 2d1s_A 51 VDYSYAEYLEKSCCLGKALQ-NYGLVVDGRIALCSENCEE--FFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTI 127 (548)
T ss_dssp CEEEHHHHHHHHHHHHHHHH-HHTCCTTCEEEEECSSCTT--THHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSE
T ss_pred CEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCchh--HHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeE
Confidence 35888888887766655443 3578999999998885543 3346789999999888876 478899999999999999
Q ss_pred eeechHHHHHH
Q 039504 121 AAVVPPLVLAL 131 (240)
Q Consensus 121 l~~~p~~~~~l 131 (240)
+++.+.....+
T Consensus 128 vi~~~~~~~~~ 138 (548)
T 2d1s_A 128 VFSSKKGLDKV 138 (548)
T ss_dssp EEECTTTHHHH
T ss_pred EEEcHHHHHHH
Confidence 99877655443
No 55
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=89.36 E-value=1.3 Score=36.53 Aligned_cols=96 Identities=14% Similarity=0.109 Sum_probs=70.3
Q ss_pred CCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc
Q 039504 23 PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ 102 (240)
Q Consensus 23 ~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 102 (240)
|+.++++.. + +...+|..++......+...+. ..++.++|++..+++.... +...+++++..|+..+..+
T Consensus 30 p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpl~ 99 (517)
T 3r44_A 30 PRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLT-ALGIAKGDRVALLMPNSVE--FCCLFYGAAKLGAVAVPIN 99 (517)
T ss_dssp TTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHH--HHHHHHHHHHHTCEEEECC
T ss_pred CCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHH-HcCCCCcCEEEEEcCCCHH--HHHHHHHHHHhCcEEEecC
Confidence 566666553 1 1246889998887766655443 4578999999999886543 3346789999999999886
Q ss_pred C-CCHHHHHHHHHhccceeeeechHHH
Q 039504 103 K-FEIGALLELIQRHRVSVAAVVPPLV 128 (240)
Q Consensus 103 ~-~~~~~~~~~i~~~~~t~l~~~p~~~ 128 (240)
+ ...+++..++++.++.++++.....
T Consensus 100 ~~~~~~~l~~~l~~~~~~~vi~~~~~~ 126 (517)
T 3r44_A 100 TRLAAPEVSFILSDSGSKVVIYGAPSA 126 (517)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGH
T ss_pred cccCHHHHHHHHHhcCceEEEECCchH
Confidence 4 7788999999999999888766543
No 56
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=89.22 E-value=4.3 Score=29.25 Aligned_cols=94 Identities=13% Similarity=0.112 Sum_probs=57.6
Q ss_pred CCcEEEEecch-HHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceeeee--c----hHH--HHHHHhCCCC
Q 039504 68 NGDVVLCVLPL-FHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVAAV--V----PPL--VLALAKNPMV 137 (240)
Q Consensus 68 ~~d~~l~~~p~-~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~--~----p~~--~~~l~~~~~~ 137 (240)
.+.+++.+.+- .|..|....-...-..|..++... ...++++.+.++++++.++.. + +++ +..+.+..+.
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~ 171 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNE 171 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHH
Confidence 34445544443 577787755556667788887765 578899999999999997666 2 221 2233332222
Q ss_pred CCCCccchhhhhccCCCCCHHHHHHH
Q 039504 138 ADYDLSSIRVVLSGAAPLGKELEDAL 163 (240)
Q Consensus 138 ~~~~~~~lr~v~~~G~~~~~~~~~~~ 163 (240)
.+.. +.++ +++||.+++++..+.+
T Consensus 172 ~~~~-~~v~-v~vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 172 EKLR-DSVK-CMFGGAPVSDKWIEEI 195 (215)
T ss_dssp TTCG-GGSE-EEEESSSCCHHHHHHH
T ss_pred cCCC-CCCE-EEEECCCCCHHHHHHh
Confidence 1110 1233 6789999997765543
No 57
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=88.46 E-value=0.14 Score=42.89 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=26.2
Q ss_pred CCCCCCcEEEecCCCCC-CCCceeeeehHHHHH
Q 039504 20 AIEPDDPVALPFSSGTT-GLPKGVVLTHKSLIT 51 (240)
Q Consensus 20 ~~~~~~~~~i~~TSGtT-G~pk~v~~s~~~l~~ 51 (240)
-+.++.+.+...||||| |.+|.+++|...+..
T Consensus 94 iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 94 ILTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp SSSSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred ccCCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 34566677888899999 779999999998755
No 58
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=88.23 E-value=1.8 Score=35.88 Aligned_cols=92 Identities=18% Similarity=0.088 Sum_probs=68.3
Q ss_pred CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504 22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM 101 (240)
Q Consensus 22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 101 (240)
.|+.++.+.. .-.+|..++......+...+. ..++.++|++..+++.... +...+++++..|+..+..
T Consensus 43 ~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~~--~~~~~lA~~~~Gav~vpl 110 (544)
T 3o83_A 43 HPHSLAIICG---------ERQLSYIELDRLSTNLATRLA-EKGLGKGDTALVQLPNVAE--FYIVFFALLKAGVVVLNA 110 (544)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEECCCSSHH--HHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEcC---------CCceeHHHHHHHHHHHHHHHH-HCCCCCCCEEEEECCCCHH--HHHHHHHHHHhCcEEecC
Confidence 3566666531 245889998887766665443 4578999999988875543 334678999999988877
Q ss_pred c-CCCHHHHHHHHHhccceeeeech
Q 039504 102 Q-KFEIGALLELIQRHRVSVAAVVP 125 (240)
Q Consensus 102 ~-~~~~~~~~~~i~~~~~t~l~~~p 125 (240)
. ....+++...+++.++.++++..
T Consensus 111 ~~~~~~~~l~~~l~~~~~~~li~~~ 135 (544)
T 3o83_A 111 LYSHRQYELNAFIKQIQPKLLIGSR 135 (544)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEEET
T ss_pred CCCCCHHHHHHHHHhcCeeEEEEcc
Confidence 5 47788999999999999888765
No 59
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=88.15 E-value=1.4 Score=36.20 Aligned_cols=82 Identities=16% Similarity=0.123 Sum_probs=63.6
Q ss_pred eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC-CCHHHHHHHHHhccceee
Q 039504 43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK-FEIGALLELIQRHRVSVA 121 (240)
Q Consensus 43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l 121 (240)
.+|..++......+...+. ..++.++|++..+++.... +...+++++..|+..+...+ ...+++..++++.++.++
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~v 104 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLV-ARGLQVGDRVAAQTEKSVE--ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIV 104 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSCHH--HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEE
T ss_pred EEEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHH--HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEE
Confidence 4888888887766655443 3478999999998886543 33467899999999988864 788999999999999998
Q ss_pred eechHH
Q 039504 122 AVVPPL 127 (240)
Q Consensus 122 ~~~p~~ 127 (240)
++.+..
T Consensus 105 i~~~~~ 110 (503)
T 4fuq_A 105 VCDPSK 110 (503)
T ss_dssp EECGGG
T ss_pred EECchh
Confidence 887643
No 60
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=87.44 E-value=3.2 Score=34.70 Aligned_cols=102 Identities=12% Similarity=0.061 Sum_probs=73.1
Q ss_pred CCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc
Q 039504 23 PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ 102 (240)
Q Consensus 23 ~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 102 (240)
|+.++++....+ ..-.+|...+...+..+...+. ..++.++|++..+++.... +...+++++..|+..+...
T Consensus 25 p~~~a~~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~-~~gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpl~ 96 (590)
T 3kxw_A 25 PNKKSCTFLNKE-----LEETMTYEQLDQHAKAIAATLQ-AEGAKPGDRVLLLFAPGLP--LIQAFLGCLYAGCIAVPIY 96 (590)
T ss_dssp TTSEEEEEEETT-----EEEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEEEC
T ss_pred CCCeEEEEEcCC-----eeEEEcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCchh--HHHHHHHHHHhCcEEEEec
Confidence 566666543311 2356899998887776655443 3478999999998886543 3346789999999998876
Q ss_pred CC----CHHHHHHHHHhccceeeeechHHHHHHH
Q 039504 103 KF----EIGALLELIQRHRVSVAAVVPPLVLALA 132 (240)
Q Consensus 103 ~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~ 132 (240)
+. ..+++...++..++.++.........+.
T Consensus 97 ~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 97 PPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp CCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred CCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 53 3467788899999999998888776654
No 61
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=84.85 E-value=1.7 Score=35.80 Aligned_cols=80 Identities=13% Similarity=0.046 Sum_probs=61.0
Q ss_pred eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceee
Q 039504 43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVA 121 (240)
Q Consensus 43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l 121 (240)
.+|..++...+..+...+. ..++.++|++..+++.... +...+++++..|+..+... ....+++..++++.++..+
T Consensus 29 ~~Ty~el~~~~~~lA~~L~-~~g~~~gd~V~i~~~n~~~--~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~i 105 (521)
T 3l8c_A 29 RRTYGQLKRDSDSIAAFID-SLALLAKSPVLVFGAQTYD--MLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLI 105 (521)
T ss_dssp EEEHHHHHHHHHHHHHHHH-HTCCCTTCCEEEEECSSHH--HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEE
T ss_pred eecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEE
Confidence 4788888887766655443 4578899999988875443 3346789999999888875 5788999999999999988
Q ss_pred eech
Q 039504 122 AVVP 125 (240)
Q Consensus 122 ~~~p 125 (240)
++..
T Consensus 106 i~~~ 109 (521)
T 3l8c_A 106 IAIE 109 (521)
T ss_dssp EESS
T ss_pred EecC
Confidence 7643
No 62
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=84.68 E-value=2.7 Score=34.49 Aligned_cols=79 Identities=9% Similarity=0.064 Sum_probs=59.6
Q ss_pred eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceee
Q 039504 43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVA 121 (240)
Q Consensus 43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l 121 (240)
.+|..++...+..+...+. ..++.++|++..+++.... +...+++++..|+..+... ....+++..++++.++..+
T Consensus 26 ~~Ty~el~~~~~~lA~~L~-~~g~~~gd~V~i~~~n~~e--~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~ 102 (512)
T 3fce_A 26 KITYKQLKEDSDALAHWIS-SEYPDDRSPIMVYGHMQPE--MIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLL 102 (512)
T ss_dssp EEEHHHHHHHHHHHHHHHH-HHSTTCCCCEEEEESSCHH--HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEE
T ss_pred eEEHHHHHHHHHHHHHHHH-HhCCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEE
Confidence 5788888887766655443 3477899999888775433 3346789999999888875 4788999999999998887
Q ss_pred eec
Q 039504 122 AVV 124 (240)
Q Consensus 122 ~~~ 124 (240)
+..
T Consensus 103 i~~ 105 (512)
T 3fce_A 103 LSA 105 (512)
T ss_dssp EES
T ss_pred Eec
Confidence 764
No 63
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=84.36 E-value=2.9 Score=34.33 Aligned_cols=81 Identities=11% Similarity=0.074 Sum_probs=60.8
Q ss_pred eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhcccee
Q 039504 42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSV 120 (240)
Q Consensus 42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 120 (240)
-.+|..++...+..+...+....+..+++++..+++.... +...+++++..|+..+... ....+++...+++.++++
T Consensus 25 ~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 102 (511)
T 3e7w_A 25 QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPH--MIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAEL 102 (511)
T ss_dssp EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHH--HHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCE
T ss_pred ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHH--HHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCE
Confidence 4589999988877766655434567788988877764432 3346789999999888875 578899999999999998
Q ss_pred eeec
Q 039504 121 AAVV 124 (240)
Q Consensus 121 l~~~ 124 (240)
++..
T Consensus 103 li~~ 106 (511)
T 3e7w_A 103 LIHA 106 (511)
T ss_dssp EEES
T ss_pred EEec
Confidence 8763
No 64
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=83.68 E-value=3.4 Score=34.39 Aligned_cols=87 Identities=13% Similarity=0.056 Sum_probs=64.7
Q ss_pred eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC-CC-------HHHHHHHH
Q 039504 42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK-FE-------IGALLELI 113 (240)
Q Consensus 42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~-------~~~~~~~i 113 (240)
-.+|...+...+..+...+. ..++.++|++..+++.... +...+++++..|+..+.... .. .+++...+
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l 124 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLL-SLNLKKGDRVALIAETSSE--FVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLL 124 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHH-HTCCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcHH--HHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHH
Confidence 46889998887776665443 3578999999999886543 33467899999999888753 33 57888889
Q ss_pred HhccceeeeechHHHHHH
Q 039504 114 QRHRVSVAAVVPPLVLAL 131 (240)
Q Consensus 114 ~~~~~t~l~~~p~~~~~l 131 (240)
++.++..++........+
T Consensus 125 ~~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 125 ASCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHHCCSEEEECGGGHHHH
T ss_pred HhcCCCEEEecHHHHHHH
Confidence 999999888876654433
No 65
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=82.85 E-value=2.4 Score=35.09 Aligned_cols=81 Identities=15% Similarity=0.139 Sum_probs=61.8
Q ss_pred eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhcccee
Q 039504 42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSV 120 (240)
Q Consensus 42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 120 (240)
..+|..++......+...+. ..++.++|++..+++.... +...+++++..|+..+... ....+++...+++.++..
T Consensus 49 ~~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~ 125 (539)
T 1mdb_A 49 THWSYRELDTRADRLAAGFQ-KLGIQQKDRVVVQLPNIKE--FFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAA 125 (539)
T ss_dssp EEEEHHHHHHHHHHHHHHHH-HHTCCTTCEEEECCCSSHH--HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSE
T ss_pred CcccHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcHH--HHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCE
Confidence 46889888887766655443 4578999999988885543 3346789999999888765 477889999999999998
Q ss_pred eeech
Q 039504 121 AAVVP 125 (240)
Q Consensus 121 l~~~p 125 (240)
++...
T Consensus 126 vi~~~ 130 (539)
T 1mdb_A 126 YIIPD 130 (539)
T ss_dssp EEEES
T ss_pred EEecc
Confidence 88754
No 66
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=79.80 E-value=6.1 Score=32.24 Aligned_cols=78 Identities=8% Similarity=-0.007 Sum_probs=60.3
Q ss_pred eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC-CCHHHHHHHHHhccceee
Q 039504 43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK-FEIGALLELIQRHRVSVA 121 (240)
Q Consensus 43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l 121 (240)
.+|..++...+..+...+.. .++|++..+++.... +...+++++..|+..+.... ...+++...+++.+++++
T Consensus 26 ~~Ty~eL~~~~~~lA~~L~~----~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~l 99 (501)
T 3ipl_A 26 SYTYQNLYCEASLLAKRLKA----YQQSRVGLYIDNSIQ--SIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLI 99 (501)
T ss_dssp EEEHHHHHHHHHHHHHHHHT----TCCSEEEEECCSSHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEE
T ss_pred EEEHHHHHHHHHHHHHHHHH----cCCCEEEEEcCCCHH--HHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEE
Confidence 58899998887776664432 289999988886543 33467899999999988864 788999999999999988
Q ss_pred eechH
Q 039504 122 AVVPP 126 (240)
Q Consensus 122 ~~~p~ 126 (240)
++...
T Consensus 100 i~~~~ 104 (501)
T 3ipl_A 100 FCTLP 104 (501)
T ss_dssp EESSC
T ss_pred EEccc
Confidence 87543
No 67
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=76.71 E-value=5.8 Score=33.46 Aligned_cols=91 Identities=13% Similarity=0.102 Sum_probs=66.3
Q ss_pred CCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc
Q 039504 23 PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ 102 (240)
Q Consensus 23 ~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 102 (240)
|+.++.+. | .-.+|...+......+...+. ..++.++|++..+++-... +...+++++..|+..+...
T Consensus 39 pd~~Av~~---~------~~~lTY~eL~~~a~~lA~~L~-~~Gv~~gd~V~l~~~~s~~--~vva~lA~l~aG~~~vpl~ 106 (617)
T 3rg2_A 39 SDSIAVID---G------ERQLSYRELNQAADNLACSLR-RQGIKPGETALVQLGNVAE--LYITFFALLKLGVAPVLAL 106 (617)
T ss_dssp CCSEEEEE---T------TEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHH--HHHHHHHHHHHTCEEEEEC
T ss_pred CCCeEEec---C------CceEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCcHH--HHHHHHHHHhcCeEEccCC
Confidence 66666653 1 135888998887776665443 3478999999988875433 3345789999999888765
Q ss_pred -CCCHHHHHHHHHhccceeeeech
Q 039504 103 -KFEIGALLELIQRHRVSVAAVVP 125 (240)
Q Consensus 103 -~~~~~~~~~~i~~~~~t~l~~~p 125 (240)
....+++...+++.++..+.+..
T Consensus 107 ~~~~~~~l~~~l~~~~~~~vl~~~ 130 (617)
T 3rg2_A 107 FSHQRSELNAYASQIEPALLIADR 130 (617)
T ss_dssp TTCCHHHHHHHHHHHCCSEEEEET
T ss_pred ccccHHHHHHHHhhcCceEEEecc
Confidence 46778889999999998887754
No 68
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=76.63 E-value=6.6 Score=32.60 Aligned_cols=99 Identities=16% Similarity=0.109 Sum_probs=66.8
Q ss_pred CCCCcEEEecCCCCCCCC--ceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEE
Q 039504 22 EPDDPVALPFSSGTTGLP--KGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVL 99 (240)
Q Consensus 22 ~~~~~~~i~~TSGtTG~p--k~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v 99 (240)
.|+.++++... +..+.. ..-.+|...+......+...+. ..++ ++|++..+++.... +...+++++..|+..+
T Consensus 33 ~p~~~A~~~~~-~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~-~~g~-~gd~V~i~~~n~~~--~~~~~lA~~~~Gav~v 107 (562)
T 3ite_A 33 HPEWKAVEVAT-GFLGSQKIVTEDWTYKKLNETANQVANLII-HASL-HGRAIAVSLDRSLI--AFAIIVGIMKSGNTYV 107 (562)
T ss_dssp CTTSEEEEEEE-CC-----CEEEEEEHHHHHHHHHHHHHHHH-HTTC-SSCEEEEECCSCHH--HHHHHHHHHHTTCEEE
T ss_pred CCCchhhhccc-ccccccccccCCCCHHHHHHHHHHHHHHHH-hcCC-CCCEEEEEeCCCHH--HHHHHHHHHHhCCEEE
Confidence 35666665432 222222 2356889998887766655433 2356 69999988886543 3346789999999998
Q ss_pred Ecc-CCCHHHHHHHHHhccceeeeech
Q 039504 100 LMQ-KFEIGALLELIQRHRVSVAAVVP 125 (240)
Q Consensus 100 ~~~-~~~~~~~~~~i~~~~~t~l~~~p 125 (240)
... ....+++...+++.++..++...
T Consensus 108 pl~~~~~~~~l~~~l~~~~~~~~i~~~ 134 (562)
T 3ite_A 108 PIEAGLPNDRKSFLLRDSRAAMAFVCD 134 (562)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECT
T ss_pred ecCCcCHHHHHHHHHHhcCCCEEEEcc
Confidence 876 47888999999999988776643
No 69
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=74.84 E-value=7.3 Score=32.96 Aligned_cols=79 Identities=16% Similarity=0.032 Sum_probs=59.8
Q ss_pred eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC-CCHHHHHHHHHhccceee
Q 039504 43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK-FEIGALLELIQRHRVSVA 121 (240)
Q Consensus 43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l 121 (240)
.+|...+......+...+. ..++.++|++..+++-... +...+++++..|+..+..++ ...+++..++++.++.++
T Consensus 52 ~lTY~eL~~~a~~lA~~L~-~~Gv~~g~~V~i~~~~s~~--~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~v 128 (620)
T 4dg8_A 52 SVDYRQLLDSAEQLSDYLL-EHYPQPGVCLGVYGEYSRE--SITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLI 128 (620)
T ss_dssp EEEHHHHHHHHHHHHHHHH-HHCCSSCCEEEEESSSCHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEE
T ss_pred cCcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEE
Confidence 5888888877766655443 4578999999988875443 33467899999999988865 667888889999999887
Q ss_pred eec
Q 039504 122 AVV 124 (240)
Q Consensus 122 ~~~ 124 (240)
...
T Consensus 129 l~~ 131 (620)
T 4dg8_A 129 LDC 131 (620)
T ss_dssp EEC
T ss_pred Eec
Confidence 743
No 70
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=70.69 E-value=18 Score=29.60 Aligned_cols=77 Identities=14% Similarity=0.078 Sum_probs=56.8
Q ss_pred eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhcccee
Q 039504 42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSV 120 (240)
Q Consensus 42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 120 (240)
-.+|...+......+...+ ..++++..+++.... +...+++++..|+..+..+ ....+++..++++.++.+
T Consensus 47 ~~~Ty~eL~~~~~~~A~~L------~~~~~V~i~~~~~~~--~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~ 118 (505)
T 3nyq_A 47 RSLTYAELAAAAGATAGRI------GGAGRVAVWATPAME--TGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSL 118 (505)
T ss_dssp EEEEHHHHHHHHHHHHTTC------C---CEEEECCSSHH--HHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSE
T ss_pred eeeeHHHHHHHHHHHHhhc------cCCCEEEEEcCCCHH--HHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCE
Confidence 4689999988888777633 347888888775433 3346788999999888875 477889999999999999
Q ss_pred eeechH
Q 039504 121 AAVVPP 126 (240)
Q Consensus 121 l~~~p~ 126 (240)
+++.+.
T Consensus 119 vi~~~~ 124 (505)
T 3nyq_A 119 VLAPPD 124 (505)
T ss_dssp EEECTT
T ss_pred EEECCc
Confidence 887653
No 71
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=66.40 E-value=5.9 Score=33.29 Aligned_cols=70 Identities=14% Similarity=0.084 Sum_probs=37.8
Q ss_pred HHHHHHhCCCCccc-ccccccccccchhhccCCCCCCCCCCCCcccc-ccCC-ceEEEeeCCCC----------CCCCCC
Q 039504 160 EDALRSRVPQAILG-QGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGT-VVRN-AELKVIDPETG----------ASLPHN 226 (240)
Q Consensus 160 ~~~~~~~~~~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~-~~v~i~d~~~~----------~~~~~g 226 (240)
++.++..+++.++. ..|+++|+.. .... . ....++..+. .+|+ .-++.+..++. ..|+.|
T Consensus 319 ~~~l~~~~g~~p~~~~~Y~ASEg~~-gi~~-----~-p~~~~~~~~~~L~p~~~ffEFiP~~~~~~~~~~~v~l~eve~G 391 (581)
T 4epl_A 319 VPKLRHYAGDLPLVSHDYGSSEGWI-AANV-----T-PRLSPEEATFAVIPNLGYFEFLPVSETGEGEEKPVGLTQVKIG 391 (581)
T ss_dssp HHHHHHHHTTSCEEECCEEETTEEE-EECC-----C-TTSCTTTCCEEECTTSCEEEEEEC-------CCCEEGGGCCTT
T ss_pred HHHHHHHcCCCccccCceeccceee-eeec-----C-CCCCccccceeecCCcEEEEEEecccccCCCCceeeHHHcCCC
Confidence 35555555667776 8999999742 2221 1 1111222222 2333 33455542221 357899
Q ss_pred CCceEEEeCC
Q 039504 227 QPGEICIRGP 236 (240)
Q Consensus 227 ~~Gel~v~~~ 236 (240)
+.+||+|+..
T Consensus 392 ~~YelviTt~ 401 (581)
T 4epl_A 392 EEYEVVITNY 401 (581)
T ss_dssp CEEEEEEEST
T ss_pred CeEEEEEeec
Confidence 9999999863
No 72
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=64.36 E-value=22 Score=33.06 Aligned_cols=82 Identities=15% Similarity=0.066 Sum_probs=61.6
Q ss_pred eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC-CCHHHHHHHHHhccceee
Q 039504 43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK-FEIGALLELIQRHRVSVA 121 (240)
Q Consensus 43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l 121 (240)
.+|...+......+...+. ..++.+++++..+++-... +...+++++..|+..+..++ ...+++..++++.++..+
T Consensus 489 ~lTY~eL~~~a~~lA~~L~-~~Gv~~g~~V~i~~~~s~~--~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~v 565 (1304)
T 2vsq_A 489 TLSYRELDEEANRIARRLQ-KHGAGKGSVVALYTKRSLE--LVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACL 565 (1304)
T ss_dssp EEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEECCCSSHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEE
T ss_pred eEcHHHHHHHHHHHHHHHH-hcCcCCcCEEEEEeCCCHH--HHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEE
Confidence 5788888777766555433 3578999999988875433 33467899999999988865 667888899999999988
Q ss_pred eechHH
Q 039504 122 AVVPPL 127 (240)
Q Consensus 122 ~~~p~~ 127 (240)
.+....
T Consensus 566 l~~~~~ 571 (1304)
T 2vsq_A 566 LTHQEM 571 (1304)
T ss_dssp EECSTT
T ss_pred EECcch
Confidence 876543
No 73
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=63.24 E-value=17 Score=26.93 Aligned_cols=87 Identities=14% Similarity=0.092 Sum_probs=52.5
Q ss_pred CcEEEEecch-HHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceeeeech------HHHHHHHhCCCCCCC
Q 039504 69 GDVVLCVLPL-FHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVAAVVP------PLVLALAKNPMVADY 140 (240)
Q Consensus 69 ~d~~l~~~p~-~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p------~~~~~l~~~~~~~~~ 140 (240)
+.+++.+.+- .|..|....-...-..|..++... ...++++.+.++++++.++..+. ..+..+.+..++.+.
T Consensus 124 ~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~~~~~ 203 (258)
T 2i2x_B 124 GTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLENGI 203 (258)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHTTTC
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHHhcCC
Confidence 3444444432 666777644445557788876554 57889999999999998776533 223334333322221
Q ss_pred CccchhhhhccCCCCCHHH
Q 039504 141 DLSSIRVVLSGAAPLGKEL 159 (240)
Q Consensus 141 ~~~~lr~v~~~G~~~~~~~ 159 (240)
. -.+++||...+++.
T Consensus 204 ---~-~~v~vGG~~~~~~~ 218 (258)
T 2i2x_B 204 ---K-IPFACGGGAVNQDF 218 (258)
T ss_dssp ---C-CCEEEESTTCCHHH
T ss_pred ---C-CcEEEECccCCHHH
Confidence 1 23678888887654
No 74
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=61.11 E-value=41 Score=23.77 Aligned_cols=90 Identities=19% Similarity=0.292 Sum_probs=52.8
Q ss_pred CcEEEEecch-HHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceeeeech------HHHHHHHhCCCCCCC
Q 039504 69 GDVVLCVLPL-FHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVAAVVP------PLVLALAKNPMVADY 140 (240)
Q Consensus 69 ~d~~l~~~p~-~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p------~~~~~l~~~~~~~~~ 140 (240)
+.+++.+.+- .|..|....-...-..|..++... ...++++.+.++++++.++..+. ..++.+.+..++.+.
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~~~ 168 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDALIAAGL 168 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHhcCC
Confidence 3444444442 566677644444456788888665 47789999999999988766532 233444333222111
Q ss_pred CccchhhhhccCCCCCHHHH
Q 039504 141 DLSSIRVVLSGAAPLGKELE 160 (240)
Q Consensus 141 ~~~~lr~v~~~G~~~~~~~~ 160 (240)
.+.++ +++||...+++..
T Consensus 169 -~~~~~-v~vGG~~~~~~~~ 186 (210)
T 1y80_A 169 -RDRVK-VIVGGAPLSQDFA 186 (210)
T ss_dssp -GGGCE-EEEESTTCCHHHH
T ss_pred -CCCCe-EEEECCCCCHHHH
Confidence 11233 6778888886554
No 75
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=48.57 E-value=65 Score=27.10 Aligned_cols=89 Identities=16% Similarity=0.153 Sum_probs=53.4
Q ss_pred CCcEEEEecch-HHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceeeeech------HHHHHHHhCCCCCC
Q 039504 68 NGDVVLCVLPL-FHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVAAVVP------PLVLALAKNPMVAD 139 (240)
Q Consensus 68 ~~d~~l~~~p~-~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p------~~~~~l~~~~~~~~ 139 (240)
.+.+++.+.+- .|..|....-...-..|..++... ...++.+.+.++++++.++..+. ..+..+.+..++.+
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~~~diVgLS~l~t~~~~~m~~~i~~Lr~~g 177 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQG 177 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEecCCCCHHHHHHHHHHHHHcC
Confidence 34445444443 566777644455557788877664 58899999999999998776542 12223333222222
Q ss_pred CCccchhhhhccCCCCCHHHH
Q 039504 140 YDLSSIRVVLSGAAPLGKELE 160 (240)
Q Consensus 140 ~~~~~lr~v~~~G~~~~~~~~ 160 (240)
. .++ |++||..++.+..
T Consensus 178 ~---~i~-ViVGGa~~~~~~a 194 (579)
T 3bul_A 178 F---TIP-LLIGGATTSKAHT 194 (579)
T ss_dssp C---CSC-EEEESTTCCHHHH
T ss_pred C---CCe-EEEEccccchhhh
Confidence 1 222 5778887777544
No 76
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=37.13 E-value=94 Score=20.89 Aligned_cols=95 Identities=19% Similarity=0.079 Sum_probs=53.2
Q ss_pred CCcEEEEecch-HHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceeeeechH------HHHHHHhCCCCCC
Q 039504 68 NGDVVLCVLPL-FHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVAAVVPP------LVLALAKNPMVAD 139 (240)
Q Consensus 68 ~~d~~l~~~p~-~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~------~~~~l~~~~~~~~ 139 (240)
...+++.+.+. .|..|....-...-..|..++... ...++++.+.+.++++.++..+.. .+..+.+..+..+
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~g 97 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELG 97 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHhcC
Confidence 34455544443 566676633344445678887765 478899999999999987765432 2333333222211
Q ss_pred CCccchhhhhccCCCCCHHHHHHHHHh
Q 039504 140 YDLSSIRVVLSGAAPLGKELEDALRSR 166 (240)
Q Consensus 140 ~~~~~lr~v~~~G~~~~~~~~~~~~~~ 166 (240)
.+.++ +++||. ...+..+.+++.
T Consensus 98 --~~~i~-v~vGG~-~~~~~~~~l~~~ 120 (161)
T 2yxb_A 98 --ADDIP-VVLGGT-IPIPDLEPLRSL 120 (161)
T ss_dssp --CTTSC-EEEEEC-CCHHHHHHHHHT
T ss_pred --CCCCE-EEEeCC-CchhcHHHHHHC
Confidence 12222 566774 455555555553
No 77
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Probab=36.44 E-value=18 Score=27.67 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHhccceeeeech-----------------HHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHh
Q 039504 104 FEIGALLELIQRHRVSVAAVVP-----------------PLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSR 166 (240)
Q Consensus 104 ~~~~~~~~~i~~~~~t~l~~~p-----------------~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~ 166 (240)
.+|++..+++++.+++.+...- ..++.+. .+..+-+++-||..++.+..+.+.+.
T Consensus 155 T~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~Ld~~~L~~I~--------~~~~~PLVlHGgS~vp~~~~~~~~~~ 226 (307)
T 3n9r_A 155 VNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVK--------RLTNIPLVLHGASAIPDNVRKSYLDA 226 (307)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSSBCCSSSCCCCHHHHHHHH--------HHHCSCEEESSCCCCCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHCCCEEEEecCCcccccCCCCCCccCHHHHHHHH--------hcCCCCeEEeCCCCcchHHHHHHHHh
Confidence 5788899999888877654321 1222221 11234577889998999999988885
Q ss_pred CCCCccccccccccc
Q 039504 167 VPQAILGQGYGMTEA 181 (240)
Q Consensus 167 ~~~~~i~~~yG~tE~ 181 (240)
+-.+-..||.++-
T Consensus 227 --gg~~~~~~G~p~e 239 (307)
T 3n9r_A 227 --GGDLKGSKGVPFE 239 (307)
T ss_dssp --TCCCTTCBCCCHH
T ss_pred --cCccCCCCCCCHH
Confidence 6678888887763
No 78
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=36.27 E-value=18 Score=27.64 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHhccceeeeec-----------------hHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHh
Q 039504 104 FEIGALLELIQRHRVSVAAVV-----------------PPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSR 166 (240)
Q Consensus 104 ~~~~~~~~~i~~~~~t~l~~~-----------------p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~ 166 (240)
.+|++..+++++.+++.+... +..++.+.+.. ++-+++-||..++++..+.+.+.
T Consensus 153 T~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~~g~p~L~~~~L~~I~~~~--------~vpLVlHGgSsv~~~~~~~~~~~ 224 (305)
T 1rvg_A 153 TNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLV--------PAPLVLHGASAVPPELVERFRAS 224 (305)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHC--------CSCEEECSCCCCCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHCCCEEEEecCccccccCCCCCCccCHHHHHHHHHhc--------CCCEEEeCCCCCcHHHHHHHHhh
Confidence 678899999988777755442 12222222211 25678889998899988888886
Q ss_pred CCCCccccccccccc
Q 039504 167 VPQAILGQGYGMTEA 181 (240)
Q Consensus 167 ~~~~~i~~~yG~tE~ 181 (240)
+-++-+.||.++-
T Consensus 225 --gg~~~~~~G~p~e 237 (305)
T 1rvg_A 225 --GGEIGEAAGIHPE 237 (305)
T ss_dssp --TCCCCSCBCCCHH
T ss_pred --ccccccCCCCCHH
Confidence 6677788887653
No 79
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=34.00 E-value=21 Score=27.49 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCC--CCcc---------chhhhhccCCCCCHHHHHHHHHhCCCCcc
Q 039504 104 FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVAD--YDLS---------SIRVVLSGAAPLGKELEDALRSRVPQAIL 172 (240)
Q Consensus 104 ~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~--~~~~---------~lr~v~~~G~~~~~~~~~~~~~~~~~~~i 172 (240)
.+|++..+++++.+++.+...--...-..+...... .++. .+-+++-||..++++..+.+.+. +-.+
T Consensus 153 TdPeea~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~L~~~~L~~I~~~~~vpLVlHGgSsvp~~~~~~~~~~--gg~~ 230 (323)
T 2isw_A 153 TEPQDAKKFVELTGVDALAVAIGTSHGAYKFKSESDIRLAIDRVKTISDLTGIPLVMHGSSSVPKDVKDMINKY--GGKM 230 (323)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSSBCCCC----CCCCHHHHHHHHHHCSCEEECSCCCCCHHHHHHHHHT--TCCC
T ss_pred CCHHHHHHHHHHHCCCEEEEecCccccccCCCCCcccccCHHHHHHHHHHhCCCeEEECCCCCCHHHHHHHHHh--cccc
Confidence 678888888888777655432111110001000011 1111 34567789998888888888885 5667
Q ss_pred cccccccc
Q 039504 173 GQGYGMTE 180 (240)
Q Consensus 173 ~~~yG~tE 180 (240)
-+.||.++
T Consensus 231 ~~~~Gvp~ 238 (323)
T 2isw_A 231 PDAVGVPI 238 (323)
T ss_dssp TTCBCCCH
T ss_pred ccCCCCCH
Confidence 78888765
No 80
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=33.69 E-value=96 Score=20.12 Aligned_cols=56 Identities=14% Similarity=0.069 Sum_probs=38.7
Q ss_pred cEEEEecch-HHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceeeeech
Q 039504 70 DVVLCVLPL-FHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVAAVVP 125 (240)
Q Consensus 70 d~~l~~~p~-~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p 125 (240)
.+++.+.+. .|..|....-...-..|..++... ...++++.+.+.++++.++..+.
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~lS~ 62 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSS 62 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEE
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEe
Confidence 344444433 677777644455556788888654 57899999999999998776643
No 81
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=32.40 E-value=24 Score=21.65 Aligned_cols=31 Identities=23% Similarity=0.608 Sum_probs=22.0
Q ss_pred cCCceEEEeeCCCCCCCC----CCC-CceEEEeCCC
Q 039504 207 VRNAELKVIDPETGASLP----HNQ-PGEICIRGPQ 237 (240)
Q Consensus 207 ~~~~~v~i~d~~~~~~~~----~g~-~Gel~v~~~~ 237 (240)
+|+-+|.|+|-++|+-.. .|+ .|+|++.|+.
T Consensus 14 l~~E~V~IvNvnNG~RfeTYvI~GerSG~I~lNGAA 49 (97)
T 1uhe_A 14 REGMKVEIVDVNNGERFSTYVILGKKRGEICVNGAA 49 (97)
T ss_dssp CTTCEEEEEETTTCCEEEEECEEECSTTCEEEEGGG
T ss_pred CCCCEEEEEECCCCceEEEEEEeeccCCeEEEchHH
Confidence 567789999977776432 233 5999998864
No 82
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=30.24 E-value=55 Score=20.02 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=21.7
Q ss_pred cCCceEEEeeCCCCCCCC----CCC--CceEEEeCCC
Q 039504 207 VRNAELKVIDPETGASLP----HNQ--PGEICIRGPQ 237 (240)
Q Consensus 207 ~~~~~v~i~d~~~~~~~~----~g~--~Gel~v~~~~ 237 (240)
+|+-+|.|+|-++|+-.. .|+ .|+|++.|+.
T Consensus 15 ~~~E~V~IvNvnNG~Rf~TYvI~GerGSG~I~lNGAA 51 (96)
T 1vc3_B 15 LPFEQVDIYDITNGARLTTYALPGERGSGVIGINGAA 51 (96)
T ss_dssp CTTCEEEEEETTTCCEEEEECEEECTTTTCEEEEGGG
T ss_pred CCCCEEEEEECCCCceEEEEEEEccCCCCeEEEchHH
Confidence 567789999977776432 243 3889998864
No 83
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=22.79 E-value=99 Score=20.31 Aligned_cols=32 Identities=25% Similarity=0.526 Sum_probs=22.4
Q ss_pred ccCCceEEEeeCCCCCCCC----CCC--CceEEEeCCC
Q 039504 206 VVRNAELKVIDPETGASLP----HNQ--PGEICIRGPQ 237 (240)
Q Consensus 206 ~~~~~~v~i~d~~~~~~~~----~g~--~Gel~v~~~~ 237 (240)
-+|+-+|.|+|-++|+-.. .|+ .|+|++.|+.
T Consensus 38 Il~~EkV~IvNvnNG~RfeTYvI~GerGSG~I~lNGAA 75 (139)
T 2c45_A 38 LLEGEQVTIVDIDNGARLVTYAITGERGSGVIGINGAA 75 (139)
T ss_dssp CCSSCCEEEEETTTCCEEEECEEEECTTTTCEEEESST
T ss_pred CCCCCEEEEEECCCCceEEEEEEEccCCCCEEEEchHH
Confidence 4567789999977776442 233 3889999865
No 84
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=22.69 E-value=1.9e+02 Score=23.39 Aligned_cols=44 Identities=16% Similarity=0.305 Sum_probs=21.2
Q ss_pred cCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-------CCCHHHHHHHHHh
Q 039504 67 TNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-------KFEIGALLELIQR 115 (240)
Q Consensus 67 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-------~~~~~~~~~~i~~ 115 (240)
.++|.++...|.+..+. ......|..++..+ ..|++.+.+.+++
T Consensus 180 ~~gd~Vlv~~p~y~~~~-----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~ 230 (500)
T 3tcm_A 180 NEKDGILVPIPQYPLYS-----ASIALHGGALVPYYLNESTGWGLETSDVKKQLED 230 (500)
T ss_dssp STTEEEEEEESCCTHHH-----HHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHhHH-----HHHHHcCCEEEEEecccccCCCCCHHHHHHHHHH
Confidence 35666665555433211 12223455554432 3456666666654
No 85
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=20.17 E-value=60 Score=19.24 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=11.6
Q ss_pred ceEEEeeCCCCCCCCC
Q 039504 210 AELKVIDPETGASLPH 225 (240)
Q Consensus 210 ~~v~i~d~~~~~~~~~ 225 (240)
+.+.|+| .+|+|++.
T Consensus 3 ~~v~V~d-~~GkPV~g 17 (82)
T 3e8v_A 3 GSVLVTD-AEGQPVAD 17 (82)
T ss_dssp EEEEEEC-TTSCBCTT
T ss_pred EEEEEEc-CCCCCCCC
Confidence 5688888 66888875
Done!