Query         039504
Match_columns 240
No_of_seqs    130 out of 1219
Neff          11.0
Searched_HMMs 13730
Date          Mon Mar 25 17:46:42 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039504.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039504hhsearch_scop -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1pg4a_ e.23.1.1 (A:) Acetyl-C 100.0 2.4E-38 1.8E-42  267.5  19.2  225    6-237   234-466 (643)
  2 d1lcia_ e.23.1.1 (A:) Lucifera 100.0   2E-34 1.4E-38  239.2  23.6  216   18-240   181-396 (541)
  3 d1ry2a_ e.23.1.1 (A:) Acetyl-C 100.0 1.2E-33 8.8E-38  239.0  19.1  220   15-239   230-460 (640)
  4 d1v25a_ e.23.1.1 (A:) Long cha 100.0 4.3E-32 3.2E-36  224.9  17.8  219   17-240   162-388 (534)
  5 d1mdba_ e.23.1.1 (A:) Dihydrox 100.0 6.8E-29   5E-33  205.4  14.8  215   17-240   175-390 (536)
  6 d1amua_ e.23.1.1 (A:) Phenylal  99.9 9.1E-27 6.6E-31  191.8  19.3  206   18-240   160-368 (514)
  7 d3cw9a1 e.23.1.1 (A:1-503) 4-c  99.9 1.9E-22 1.4E-26  164.8  16.9  213   17-238   146-360 (503)
  8 d1v25a_ e.23.1.1 (A:) Long cha  94.1    0.17 1.2E-05   39.8   9.7  103   23-133    25-128 (534)
  9 d1amua_ e.23.1.1 (A:) Phenylal  93.9    0.17 1.2E-05   39.5   9.3  100   22-133    36-136 (514)
 10 d3cw9a1 e.23.1.1 (A:1-503) 4-c  93.7   0.088 6.4E-06   40.8   7.1   94   23-126    16-110 (503)
 11 d1lcia_ e.23.1.1 (A:) Lucifera  93.7   0.047 3.4E-06   43.1   5.5   89   42-133    46-135 (541)
 12 d1pg4a_ e.23.1.1 (A:) Acetyl-C  93.4    0.18 1.3E-05   41.0   8.8   97   22-124    85-182 (643)
 13 d1ry2a_ e.23.1.1 (A:) Acetyl-C  93.2    0.21 1.5E-05   40.4   8.9   99   22-125    72-171 (640)
 14 d1mdba_ e.23.1.1 (A:) Dihydrox  90.6    0.42   3E-05   37.3   7.7   79   43-124    50-129 (536)
 15 d3bula2 c.23.6.1 (A:741-896) M  88.5     1.2 8.4E-05   28.8   7.3   91   67-161     5-103 (156)
 16 d1xrsb1 c.23.6.1 (B:102-261) D  59.2      13 0.00092   23.7   5.7   88   70-160    21-129 (160)
 17 d7reqa2 c.23.6.1 (A:561-728) M  56.3      10 0.00075   24.4   4.9   94   69-166    38-139 (168)
 18 d1ccwa_ c.23.6.1 (A:) Glutamat  52.4      16  0.0011   22.5   5.2   96   68-166     3-111 (137)
 19 d1iqoa_ d.214.1.1 (A:) Hypothe  36.3      13 0.00092   20.8   2.4   40    2-41      9-54  (88)
 20 d1rvga_ c.1.10.2 (A:) Fructose  34.7     8.9 0.00065   27.5   2.0   75  104-180   153-236 (305)
 21 d1uhra_ a.42.1.1 (A:) SWI/SNF   32.5      11 0.00081   21.5   1.8   16   32-47      2-17  (93)
 22 d1v31a_ a.42.1.1 (A:) Hypothet  28.9      13 0.00096   21.2   1.7   16   32-47      2-17  (93)
 23 d1ygya2 c.23.12.1 (A:3-98,A:28  27.2      19  0.0014   21.8   2.4   71   96-175    23-93  (130)

No 1  
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}
Probab=100.00  E-value=2.4e-38  Score=267.51  Aligned_cols=225  Identities=20%  Similarity=0.273  Sum_probs=186.1

Q ss_pred             hhHhhcCCCCCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhH
Q 039504            6 TVLSEADEDQIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLN   85 (240)
Q Consensus         6 ~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~   85 (240)
                      ++..+.......+..++++|+++|+|||||||.||+|.++|.+++.........   .++++++|++++.+|++|+.++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~  310 (643)
T d1pg4a_         234 RDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKY---VFDYHPGDIYWCTADVGWVTGHS  310 (643)
T ss_dssp             HHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHH
T ss_pred             hhhhcccCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHH---hhCCCCCCEEEEeCChHHHHHHH
Confidence            344444555556667789999999999999999999999999976554433221   34678999999999999999987


Q ss_pred             HHHHHHhhcCceEEEccC----CCHHHHHHHHHhccceeeeechHHHHHHHhCCCC--CCCCccchhhhhccCCCCCHHH
Q 039504           86 SVLLCSLRAGAGVLLMQK----FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV--ADYDLSSIRVVLSGAAPLGKEL  159 (240)
Q Consensus        86 ~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~~~lr~v~~~G~~~~~~~  159 (240)
                      ..++.++..|+++++.++    .++..++++++++++|++.++|++++.|++....  ...++++||.++++|+++++++
T Consensus       311 ~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~  390 (643)
T d1pg4a_         311 YLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEA  390 (643)
T ss_dssp             HTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHH
T ss_pred             HHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCCCCHHH
Confidence            677889999999998653    5889999999999999999999999999887543  3456789999999999999999


Q ss_pred             HHHHHHhCC--CCcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCC
Q 039504          160 EDALRSRVP--QAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQ  237 (240)
Q Consensus       160 ~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~  237 (240)
                      .+++.+.++  ++++++.||+||++..+...   .........+++|+|+++++++|+| +++++++.|+.|||+|+|+.
T Consensus       391 ~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~---~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~~~~g~~Gel~v~~~~  466 (643)
T d1pg4a_         391 WEWYWKKIGKEKCPVVDTWWQTETGGFMITP---LPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSW  466 (643)
T ss_dssp             HHHHHHHTTTTCSCEEEEBCCGGGSSCSBCC---CTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECSCC
T ss_pred             HHHHHHHhCCCCceEEEeechhhccceEEec---CCCccCCCCCccccccCCCEEEEEC-CCCCCCCCCceEEEEEecCC
Confidence            999999984  47799999999998765442   1122345678999999999999999 66999999999999999953


No 2  
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}
Probab=100.00  E-value=2e-34  Score=239.22  Aligned_cols=216  Identities=35%  Similarity=0.514  Sum_probs=181.5

Q ss_pred             CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504           18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~   97 (240)
                      .....++++++++|||||||.||+|.++|+++............ ...+.+.++++..+|++|..+.. ..+..+..++.
T Consensus       181 ~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~  258 (541)
T d1lcia_         181 ESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF-GNQIIPDTAILSVVPFHHGFGMF-TTLGYLICGFR  258 (541)
T ss_dssp             CCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTT-SCCCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCE
T ss_pred             cccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcc-ccccccccccccccccccccccc-ccccccccccc
Confidence            34456688999999999999999999999999877665544332 44678899999999999998887 56677778888


Q ss_pred             EEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccccc
Q 039504           98 VLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYG  177 (240)
Q Consensus        98 ~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG  177 (240)
                      .+.....+.......+.+++++.+..+|.++..+..........++++|.+++||++++++..+++.+.++..++++.||
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG  338 (541)
T d1lcia_         259 VVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYG  338 (541)
T ss_dssp             EEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEEC
T ss_pred             cccccccccchhHHHHhhhhccccccCccccccccccccccccccccceEEEecccccccccccccccccCCceeeecCC
Confidence            88888899999999999999999999999999999988888888899999999999999999999999996678999999


Q ss_pred             ccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          178 MTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       178 ~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      +||++..++..     .......+++|+|+|+++++|+|+|++++++.|++|||+|+|+++++
T Consensus       339 ~TE~~~~~~~~-----~~~~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~Gel~v~g~~~~~  396 (541)
T d1lcia_         339 LTETTSAILIT-----PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMS  396 (541)
T ss_dssp             CGGGSSCSEEC-----CCC---CCCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCS
T ss_pred             ccccCceEEec-----CcccCCCCccccccCCCEEEEEECCCCcCCCCCCeEEEEEccCccCC
Confidence            99998876664     23345667899999999999999999999999999999999999874


No 3  
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00  E-value=1.2e-33  Score=239.05  Aligned_cols=220  Identities=22%  Similarity=0.318  Sum_probs=179.6

Q ss_pred             CCCCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhc
Q 039504           15 QIPEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRA   94 (240)
Q Consensus        15 ~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~   94 (240)
                      .......+++|+++|+|||||||.||+|+++|.++..........   .+.+.++|++++.+|++|+.+....++.++..
T Consensus       230 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~---~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~  306 (640)
T d1ry2a_         230 YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRY---TFDTHQEDVFFTAGDIGWITGHTYVVYGPLLY  306 (640)
T ss_dssp             CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHH---HSCCCSSCEEEECSCTTSHHHHHHTTHHHHHH
T ss_pred             ccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHh---hcCCCcccceeeccchhhhhhHHHHHHHHHHh
Confidence            334556778999999999999999999999999987765443321   23578999999999999999987678889999


Q ss_pred             CceEEEccC----CCHHHHHHHHHhccceeeeechHHHHHHHhCCCC--CCCCccchhhhhccCCCCCHHHHHHHHHhCC
Q 039504           95 GAGVLLMQK----FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMV--ADYDLSSIRVVLSGAAPLGKELEDALRSRVP  168 (240)
Q Consensus        95 G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~  168 (240)
                      |+++++.+.    .++..+++.++++++|++.++|++++.|.+....  ...++++||.++++|+++++++.+++.+.++
T Consensus       307 G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g  386 (640)
T d1ry2a_         307 GCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIG  386 (640)
T ss_dssp             TSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTS
T ss_pred             CCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEecccCcHHHHHHHHHhcC
Confidence            998888654    4889999999999999999999999999876543  4567889999999999999999999999985


Q ss_pred             C--CcccccccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCC-CCCCCceEEEeC--CCCC
Q 039504          169 Q--AILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASL-PHNQPGEICIRG--PQIM  239 (240)
Q Consensus       169 ~--~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~-~~g~~Gel~v~~--~~~~  239 (240)
                      .  ..+++.||+||++..+.....  .......++++|+|+|+++++|+|+++++.+ +.++.|||+|++  |+++
T Consensus       387 ~~~~~i~~~yg~te~~~~~~~~~~--~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~  460 (640)
T d1ry2a_         387 KNEIPIVDTYWQTESGSHLVTPLA--GGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFA  460 (640)
T ss_dssp             CSSSCEEECBCCTTTCSCSEECCT--TTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSC
T ss_pred             CCcceEEeeecccccccccccccC--CCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCcc
Confidence            3  568999999999876554321  1223456789999999999999997766655 456679999998  4554


No 4  
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}
Probab=99.98  E-value=4.3e-32  Score=224.91  Aligned_cols=219  Identities=28%  Similarity=0.411  Sum_probs=175.4

Q ss_pred             CCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCc
Q 039504           17 PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGA   96 (240)
Q Consensus        17 ~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~   96 (240)
                      ......++++++++|||||||.||+|.++|.++..........  ........|+++..+|++|..++...+...+..|.
T Consensus       162 ~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~--~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~~  239 (534)
T d1v25a_         162 DPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLV--DGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAK  239 (534)
T ss_dssp             CCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTST--TTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCE
T ss_pred             cccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhh--cccccccccccccccchhhhccccccceeeeecce
Confidence            3456678899999999999999999999999997665443332  14467889999999999999888854544444444


Q ss_pred             eEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccccc
Q 039504           97 GVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGY  176 (240)
Q Consensus        97 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  176 (240)
                      .+...+.+++..+..++.++++|++.++|+++..+..........++++|.+++||+++++++.+++++.  +.++++.|
T Consensus       240 ~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~--~~~i~~~y  317 (534)
T d1v25a_         240 QVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERM--GVEVRQGY  317 (534)
T ss_dssp             EEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHHHHT--TCEEEEEE
T ss_pred             eeeccccccccccchhhhhccccccccCchhhhhhhhhhccccccccceeEEEEecCCCCHHHHHHHHHh--CCeeeeec
Confidence            4444566999999999999999999999999999988766667788999999999999999999998865  78999999


Q ss_pred             cccccccchhhccCCCCCCC------CCCCCccccccCCceEEEeeCCCCCCCCC--CCCceEEEeCCCCCC
Q 039504          177 GMTEAGPVLSMCLGFAKQPF------PTKSGSCGTVVRNAELKVIDPETGASLPH--NQPGEICIRGPQIMK  240 (240)
Q Consensus       177 G~tE~~~~~~~~~~~~~~~~------~~~~~~~G~~~~~~~v~i~d~~~~~~~~~--g~~Gel~v~~~~~~~  240 (240)
                      |+||++.++...........      ....+++|+|+|+++++|+| +++++++.  |+.|||+|+||++++
T Consensus       318 G~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~  388 (534)
T d1v25a_         318 GLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITG  388 (534)
T ss_dssp             ECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBS
T ss_pred             cccccccceeecccCccccccCccccccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccc
Confidence            99999987765421110000      01235899999999999999 56888876  679999999999874


No 5  
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}
Probab=99.96  E-value=6.8e-29  Score=205.40  Aligned_cols=215  Identities=26%  Similarity=0.364  Sum_probs=177.6

Q ss_pred             CCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHH-HHHHhhcC
Q 039504           17 PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSV-LLCSLRAG   95 (240)
Q Consensus        17 ~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~-~~~~l~~G   95 (240)
                      ......++|+++++|||||||.||+|.++|.++.........    .+.+.++|++++..|+.|.+++... ....+..|
T Consensus       175 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g  250 (536)
T d1mdba_         175 KLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE----VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAG  250 (536)
T ss_dssp             CCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH----HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTT
T ss_pred             CCCccCccchHHhhhcccccccceeccccccccccccccccc----ccccccccccccccccccccceeecccccccccc
Confidence            445677899999999999999999999999999998877666    4568999999999999999887633 44445557


Q ss_pred             ceEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccc
Q 039504           96 AGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQG  175 (240)
Q Consensus        96 ~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~  175 (240)
                      .+++..+.+++..+++.+++++++.+..+|..+..+..........++++|.+++||+++++.+.+++.+.+ +......
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~  329 (536)
T d1mdba_         251 GRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQV  329 (536)
T ss_dssp             CEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEE
T ss_pred             ccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccccCcceeEEEeccccccccccchhhcc-Cceeeec
Confidence            888888889999999999999999999999999988887666667788999999999999999999999999 6778888


Q ss_pred             ccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          176 YGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       176 yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      |+.+|....+....    .......+++|.|.++....+++.+++++++.++.|||+|+|+.+++
T Consensus       330 ~~~~~~~~~~~~~~----~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~g~~~~~  390 (536)
T d1mdba_         330 FGMAEGLVNYTRLD----DPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIR  390 (536)
T ss_dssp             EECTTSCEEECCTT----SCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCS
T ss_pred             cccccccccccccc----cccccccCCcccCCCCcceEEEEcCCCCeecccccceeecCCCcccc
Confidence            88888765444321    11223346889998766655555588999999999999999999874


No 6  
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}
Probab=99.95  E-value=9.1e-27  Score=191.79  Aligned_cols=206  Identities=20%  Similarity=0.305  Sum_probs=165.6

Q ss_pred             CCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCce
Q 039504           18 EVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAG   97 (240)
Q Consensus        18 ~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~   97 (240)
                      ..+..++|+++++|||||||.||++.++|.++.........    .+.....|+++...|++|..++. .++.++..|+.
T Consensus       160 ~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~~~~  234 (514)
T d1amua_         160 HVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFEN----SLNVTEKDRIGQFASISFDASVW-EMFMALLTGAS  234 (514)
T ss_dssp             CCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHH----TSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCE
T ss_pred             CCCCCcccceEEEEccCCCCCcccccccccccccccccccc----cccccccccccceeccccccccc-ccccccccccc
Confidence            34566889999999999999999999999999988877776    55689999999999999999887 56777777878


Q ss_pred             EEEccC---CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccc
Q 039504           98 VLLMQK---FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQ  174 (240)
Q Consensus        98 ~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~  174 (240)
                      ++....   .+....++.+..+..+.+...|.....      .....+.++|.++++|+++++++.+++.+   +..+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~G~~~~~~~~~~~~~---~~~~~~  305 (514)
T d1amua_         235 LYIILKDTINDFVKFEQYINQKEITVITLPPTYVVH------LDPERILSIQTLITAGSATSPSLVNKWKE---KVTYIN  305 (514)
T ss_dssp             EEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTT------SCTTTCCSCSEEEEESSCCCHHHHHHHTT---TSEEEE
T ss_pred             ccccccccccchhhhhhhhhhhhcccccceeeeccc------ccccccccccEEEEecccCCHHHhhhhcc---ceeEEE
Confidence            877653   677888999999999999998876553      23346788999999999999999887766   678999


Q ss_pred             cccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCCCC
Q 039504          175 GYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK  240 (240)
Q Consensus       175 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~  240 (240)
                      .||+||++.++......  ........+.|.+.+...+.+.| +++++++.|+.|||+|+||.+++
T Consensus       306 ~yG~tE~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~d-~~~~~~~~g~~GEl~v~~~~~~~  368 (514)
T d1amua_         306 AYGPTETTICATTWVAT--KETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLAR  368 (514)
T ss_dssp             EECCGGGSSCSEEEECC--SSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCC
T ss_pred             eeccccCceeeeecccc--ccccCcccccccceeeeeEeeec-ccceecCCCCeeEEEEccCcccc
Confidence            99999999876554322  22233456789999999999999 78999999999999999999874


No 7  
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}
Probab=99.89  E-value=1.9e-22  Score=164.83  Aligned_cols=213  Identities=22%  Similarity=0.294  Sum_probs=166.1

Q ss_pred             CCCCCCCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCc
Q 039504           17 PEVAIEPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGA   96 (240)
Q Consensus        17 ~~~~~~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~   96 (240)
                      .....+++++++++|||||||.||++.++|.++...........  .......++++..+|+.+..+.....+.+...+.
T Consensus       146 ~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  223 (503)
T d3cw9a1         146 EDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV--GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDG  223 (503)
T ss_dssp             CCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTS--CCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTC
T ss_pred             ccccchhhhhhhhcccccccccccccccccchhhhhhhhccccc--cccccccccccccCcccccccccccccccccccc
Confidence            34567789999999999999999999999999988876665432  2245667889999999888777766777888888


Q ss_pred             eEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCC--CCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCcccc
Q 039504           97 GVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPM--VADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQ  174 (240)
Q Consensus        97 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~  174 (240)
                      .++..+.+++..++..+.+++++.+..+|..+..+.....  .....++++|.+++||++++++...++...+ +..+.+
T Consensus       224 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~-~~~~~~  302 (503)
T d3cw9a1         224 TYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVN  302 (503)
T ss_dssp             EEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHC-CSEEEE
T ss_pred             ccccccccChHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEeccccccccccccccccc-cccccc
Confidence            8999999999999999999999999999998887655322  2344567899999999999999999999998 678999


Q ss_pred             cccccccccchhhccCCCCCCCCCCCCccccccCCceEEEeeCCCCCCCCCCCCceEEEeCCCC
Q 039504          175 GYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQI  238 (240)
Q Consensus       175 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~  238 (240)
                      .||++|++..+.....     ........+.+.+...+.+.+ +.++.++.|+.|++.+.+...
T Consensus       303 ~yg~~e~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~g~~~~~~~~~  360 (503)
T d3cw9a1         303 IYGTTEAMNSLYMRQP-----KTGTEMAPGFFSEVRIVRIGG-GVDEIVANGEEGELIVAASDS  360 (503)
T ss_dssp             EEEETTTEEEEEEESC-----SSSSEEBCCTTCCEEEECTTS-CTTCBCCTTCCEEEEEECCTT
T ss_pred             cccccccceeeeeccc-----cccccccccccccceeeeeec-ccCcccCCCcccccccccccc
Confidence            9999999876655421     122222333333444444444 778999999999999887654


No 8  
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}
Probab=94.13  E-value=0.17  Score=39.83  Aligned_cols=103  Identities=13%  Similarity=0.044  Sum_probs=76.5

Q ss_pred             CCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc
Q 039504           23 PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ  102 (240)
Q Consensus        23 ~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~  102 (240)
                      |+.++++...+|.     .-.+|..++...+..+...+. ..+++++|++..+++....  +...+++++..|+..+...
T Consensus        25 pd~~av~~~~~g~-----~~~~Ty~el~~~~~~~A~~L~-~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~G~v~vpl~   96 (534)
T d1v25a_          25 GRKEVVSRLHTGE-----VHRTTYAEVYQRARRLMGGLR-ALGVGVGDRVATLGFNHFR--HLEAYFAVPGMGAVLHTAN   96 (534)
T ss_dssp             TTCEEEEECTTSC-----EEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECC
T ss_pred             CCCeEEEEecCCc-----eEEEcHHHHHHHHHHHHHHHH-HCCcCCCCEEEEEeCCCHH--HHHHHHHHHHhCcEEEecC
Confidence            5666766655542     234788888888776665544 4578999999988886543  3346889999999998876


Q ss_pred             -CCCHHHHHHHHHhccceeeeechHHHHHHHh
Q 039504          103 -KFEIGALLELIQRHRVSVAAVVPPLVLALAK  133 (240)
Q Consensus       103 -~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~  133 (240)
                       ....+++...++..++..+.........+..
T Consensus        97 ~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~  128 (534)
T d1v25a_          97 PRLSPKEIAYILNHAEDKVLLFDPNLLPLVEA  128 (534)
T ss_dssp             TTSCHHHHHHHHHHHTCSEEEECGGGHHHHHH
T ss_pred             CCCCHHHHHHHHHhhccccccccchhhhhHHH
Confidence             4788999999999999998887766655443


No 9  
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}
Probab=93.92  E-value=0.17  Score=39.54  Aligned_cols=100  Identities=12%  Similarity=0.054  Sum_probs=76.8

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .|+.+|++..  |       -.+|..++...+..+...+. ..++.++|++..+++....+  ....++++..|+..+..
T Consensus        36 ~Pd~~Al~~~--~-------~~~Ty~eL~~~v~~lA~~L~-~~Gv~~gd~Vai~~~n~~~~--v~~~la~~~~G~v~v~l  103 (514)
T d1amua_          36 RPNNVAIVCE--N-------EQLTYHELNVKANQLARIFI-EKGIGKDTLVGIMMEKSIDL--FIGILAVLKAGGAYVPI  103 (514)
T ss_dssp             CTTSEEEEET--T-------EEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEEC
T ss_pred             CCCCeEEEEC--C-------eeEcHHHHHHHHHHHHHHHH-HcCcCCcCEEEEEeCCCHHH--HHHHHHHHHhCcEEEEe
Confidence            4677777641  1       35899999888877665443 45889999999888865543  34678999999999887


Q ss_pred             c-CCCHHHHHHHHHhccceeeeechHHHHHHHh
Q 039504          102 Q-KFEIGALLELIQRHRVSVAAVVPPLVLALAK  133 (240)
Q Consensus       102 ~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~  133 (240)
                      . ....+.+...+++.+++.++........+..
T Consensus       104 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~  136 (514)
T d1amua_         104 DIEYPKERIQYILDDSQARMLLTQKHLVHLIHN  136 (514)
T ss_dssp             CTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTT
T ss_pred             CCCCCHHHHHHHHhccCCcEEEEehhhhhhhhh
Confidence            5 5888999999999999999988877776654


No 10 
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}
Probab=93.66  E-value=0.088  Score=40.81  Aligned_cols=94  Identities=24%  Similarity=0.207  Sum_probs=68.6

Q ss_pred             CCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc
Q 039504           23 PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ  102 (240)
Q Consensus        23 ~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~  102 (240)
                      |+.++.+.-.+|.       .+|...+...+..+...+. ..++.++|++..+++....  +...+++++..|+..+..+
T Consensus        16 pd~~al~~~~~~~-------~~Ty~el~~~~~~~a~~L~-~~Gv~~gd~V~i~~~n~~~--~~~~~lA~~~~G~v~vpi~   85 (503)
T d3cw9a1          16 PDHCALAVPARGL-------RLTHAELRARVEAVAARLH-ADGLRPQQRVAVVAPNSAD--VVIAILALHRLGAVPALLN   85 (503)
T ss_dssp             TTSEEEEEGGGTE-------EEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSCHH--HHHHHHHHHHHTCEEEEEC
T ss_pred             CCCeEEEECCCCc-------EEeHHHHHHHHHHHHHHHH-HcCcCCCCEEEEEeCCCHH--HHHHHHHHHHhCcEEEEeC
Confidence            4666666654442       4788888877766655443 4578999999988875443  3345788999999888875


Q ss_pred             -CCCHHHHHHHHHhccceeeeechH
Q 039504          103 -KFEIGALLELIQRHRVSVAAVVPP  126 (240)
Q Consensus       103 -~~~~~~~~~~i~~~~~t~l~~~p~  126 (240)
                       ...++++..++++.++..++....
T Consensus        86 ~~~~~~~i~~~l~~~~~~~~i~~~~  110 (503)
T d3cw9a1          86 PRLKSAELAELIKRGEMTAAVIAVG  110 (503)
T ss_dssp             TTSCHHHHHHHHHHTTCSEEEESSC
T ss_pred             CCCCHHHHHHHHHhcCCcEEEeecc
Confidence             578899999999999998876543


No 11 
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}
Probab=93.65  E-value=0.047  Score=43.12  Aligned_cols=89  Identities=12%  Similarity=0.063  Sum_probs=69.3

Q ss_pred             eeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhcccee
Q 039504           42 VVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSV  120 (240)
Q Consensus        42 v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~  120 (240)
                      ..+|...+...+..+...+. ..++.++|++..+++...  .+...+++++..|+..+... ....+++...++..++++
T Consensus        46 ~~lTy~el~~~~~~lA~~L~-~~Gi~~Gd~Vai~~~ns~--e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~  122 (541)
T d1lcia_          46 VNITYAEYFEMSVRLAEAMK-RYGLNTNHRIVVCSENSL--QFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTV  122 (541)
T ss_dssp             CEEEHHHHHHHHHHHHHHHH-HHTCCTTCEEEEECSSCS--STHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred             eEeeHHHHHHHHHHHHHHHH-HcCcCCCCEEEEEeCCCH--HHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceE
Confidence            35788998888877665544 568899999998887543  33346788999999888875 588899999999999999


Q ss_pred             eeechHHHHHHHh
Q 039504          121 AAVVPPLVLALAK  133 (240)
Q Consensus       121 l~~~p~~~~~l~~  133 (240)
                      ++.....+..+.+
T Consensus       123 vi~~~~~~~~~~~  135 (541)
T d1lcia_         123 VFVSKKGLQKILN  135 (541)
T ss_dssp             EEECGGGHHHHHH
T ss_pred             Eeeeccccccchh
Confidence            9998877665544


No 12 
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}
Probab=93.41  E-value=0.18  Score=41.03  Aligned_cols=97  Identities=18%  Similarity=0.165  Sum_probs=71.5

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .++.+|.|.... .++.  ...+|..+|...+..+...+. ..++.+||++..++|....+-  ..+++++..|+..+..
T Consensus        85 ~~d~~Ali~~~~-~~~~--~~~~TY~eL~~~v~~~A~~L~-~~Gv~~Gd~V~i~~~n~~e~i--v~~lA~~~~Gav~v~l  158 (643)
T d1pg4a_          85 NGDRTAIIWEGD-DTSQ--SKHISYRELHRDVCRFANTLL-DLGIKKGDVVAIYMPMVPEAA--VAMLACARIGAVHSVI  158 (643)
T ss_dssp             HTTSEEEEEECS-STTC--EEEEEHHHHHHHHHHHHHHHH-HHTCCTTCEEEEECCSSHHHH--HHHHHHHHHTCEEEEC
T ss_pred             CCCCEEEEEEec-CCCC--ceEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEecccchHHH--HHHHHHHHhCeEEEec
Confidence            356666665432 2232  235788888888877666544 568999999999998655433  3578899999988887


Q ss_pred             c-CCCHHHHHHHHHhccceeeeec
Q 039504          102 Q-KFEIGALLELIQRHRVSVAAVV  124 (240)
Q Consensus       102 ~-~~~~~~~~~~i~~~~~t~l~~~  124 (240)
                      . .+.++.+...+++.++.++++.
T Consensus       159 ~~~~~~~~l~~~l~~~~~~~li~~  182 (643)
T d1pg4a_         159 FGGFSPEAVAGCIIDSSSRLVITA  182 (643)
T ss_dssp             CTTSCHHHHHHHHHHHTCSEEEEE
T ss_pred             CCCCCHHHHHHHHHhcCCCEEEEc
Confidence            5 5899999999999999988864


No 13 
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=93.20  E-value=0.21  Score=40.40  Aligned_cols=99  Identities=20%  Similarity=0.192  Sum_probs=72.1

Q ss_pred             CCCCcEEEecCCCCCCCCceeeeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEc
Q 039504           22 EPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLM  101 (240)
Q Consensus        22 ~~~~~~~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  101 (240)
                      .|+.+|.+... ..+|.-  ..+|..++...+..+...+...+++.+||++..++|....  +...+++++..|+..+..
T Consensus        72 ~pd~~Ali~~~-~~~g~~--~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpi  146 (640)
T d1ry2a_          72 TPNKKAIIFEG-DEPGQG--YSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPE--AIITLLAISRIGAIHSVV  146 (640)
T ss_dssp             CTTSEEEEEEC-SSTTCC--EEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHH--HHHHHHHHHHTTCEEEEC
T ss_pred             CCCCEEEEEEe-cCCCCe--eEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHH--HHHHHHHhccCceEeecC
Confidence            56777776543 223322  4678888888877766554324689999999999885443  334678999999998887


Q ss_pred             c-CCCHHHHHHHHHhccceeeeech
Q 039504          102 Q-KFEIGALLELIQRHRVSVAAVVP  125 (240)
Q Consensus       102 ~-~~~~~~~~~~i~~~~~t~l~~~p  125 (240)
                      . .+.++++...+++.++..+++..
T Consensus       147 ~~~~~~~~l~~~~~~~~~~~~~~~~  171 (640)
T d1ry2a_         147 FAGFSSNSLRDRINDGDSKVVITTD  171 (640)
T ss_dssp             CTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred             CCCCCHHHHHHHHHhhhccccccch
Confidence            5 58889999999999998887754


No 14 
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}
Probab=90.58  E-value=0.42  Score=37.28  Aligned_cols=79  Identities=15%  Similarity=0.142  Sum_probs=61.8

Q ss_pred             eeehHHHHHHHHhhhcCCCCCccccCCcEEEEecchHHhhhhHHHHHHHhhcCceEEEccC-CCHHHHHHHHHhccceee
Q 039504           43 VLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK-FEIGALLELIQRHRVSVA  121 (240)
Q Consensus        43 ~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l  121 (240)
                      .+|..++...+..+...+. ..+++++|++..++|....  +...+++++..|+..+...+ ...+++...+++.++..+
T Consensus        50 ~~Ty~el~~~v~~~A~~L~-~~Gv~~gd~V~i~~~n~~~--~~v~~lA~~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~  126 (536)
T d1mdba_          50 HWSYRELDTRADRLAAGFQ-KLGIQQKDRVVVQLPNIKE--FFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAY  126 (536)
T ss_dssp             EEEHHHHHHHHHHHHHHHH-HHTCCTTCEEEECCCSSHH--HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEE
T ss_pred             eEcHHHHHHHHHHHHHHHH-HcCcCCcCEEEEEeCCCHH--HHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccceE
Confidence            5899999888877665443 4578999999988886543  33467899999999988754 788899999999998877


Q ss_pred             eec
Q 039504          122 AVV  124 (240)
Q Consensus       122 ~~~  124 (240)
                      +..
T Consensus       127 ~~~  129 (536)
T d1mdba_         127 IIP  129 (536)
T ss_dssp             EEE
T ss_pred             ecc
Confidence            664


No 15 
>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=88.52  E-value=1.2  Score=28.81  Aligned_cols=91  Identities=16%  Similarity=0.149  Sum_probs=57.7

Q ss_pred             cCCcEEEEecch-HHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceeeeechH------HHHHHHhCCCCC
Q 039504           67 TNGDVVLCVLPL-FHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVAAVVPP------LVLALAKNPMVA  138 (240)
Q Consensus        67 ~~~d~~l~~~p~-~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~------~~~~l~~~~~~~  138 (240)
                      +.+.+++.+.+- .|..|....-...-..|..++... ...++++++.++++++.++..+..      .++.+.+..+..
T Consensus         5 ~~gkivi~tv~gD~HdiG~~iv~~~l~~~G~~Vi~LG~~~p~e~~~~~~~~~~~d~i~lS~l~~~~~~~~~~~~~~l~~~   84 (156)
T d3bula2           5 TNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQ   84 (156)
T ss_dssp             CSCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHHHHHHHHHHHHHT
T ss_pred             cCCEEEEEeeCCChhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhhCCCEEEEecccccchHHHHHHHHHHHhc
Confidence            456666655553 677777644445556788877765 588999999999999998776432      222333322222


Q ss_pred             CCCccchhhhhccCCCCCHHHHH
Q 039504          139 DYDLSSIRVVLSGAAPLGKELED  161 (240)
Q Consensus       139 ~~~~~~lr~v~~~G~~~~~~~~~  161 (240)
                      +.   +. .+++||.+++.+...
T Consensus        85 g~---~~-~vivGG~~~~~~~~~  103 (156)
T d3bula2          85 GF---TI-PLLIGGATTSKAHTA  103 (156)
T ss_dssp             TC---CS-CEEEESTTCCHHHHH
T ss_pred             cc---cc-eEEEecccccchHHH
Confidence            21   12 367889888876544


No 16 
>d1xrsb1 c.23.6.1 (B:102-261) D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain {Clostridium sticklandii [TaxId: 1511]}
Probab=59.17  E-value=13  Score=23.73  Aligned_cols=88  Identities=15%  Similarity=0.109  Sum_probs=50.8

Q ss_pred             cEEEEecc-hHHhhhhHHHHHHHhh-cC---------ceEEEc-cCCCHHHHHHHHHhccceeeeechH---------HH
Q 039504           70 DVVLCVLP-LFHIYSLNSVLLCSLR-AG---------AGVLLM-QKFEIGALLELIQRHRVSVAAVVPP---------LV  128 (240)
Q Consensus        70 d~~l~~~p-~~~~~g~~~~~~~~l~-~G---------~~~v~~-~~~~~~~~~~~i~~~~~t~l~~~p~---------~~  128 (240)
                      .+++.+.. =.|..|.. .+...+. .|         ..++.. ....++.+.+.+.++++.++..+..         .+
T Consensus        21 ~vv~~~~g~D~HdiG~~-iv~~~l~~~G~~~~~~~~~~eVi~LG~~vp~e~~v~~a~e~~~d~VglS~l~t~~~~h~~~~   99 (160)
T d1xrsb1          21 VVVGASTGTDAHTVGID-AIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELEADVLLVSQTVTQKNVHIQNM   99 (160)
T ss_dssp             EEEEEEBTTCCCCHHHH-HHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTTCSEEEEECCCCTTSHHHHHH
T ss_pred             EEEEEEeCCcHHHHHHH-HHHHHHHHcCCcccccccceEEEeCCCCCCHHHHHHHHHhcCCCEEEEeecccccchhHHHH
Confidence            34444544 36777776 3444443 33         345554 4578999999999999987766531         23


Q ss_pred             HHHHhCCCCCCCCccchhhhhccCCCCCHHHH
Q 039504          129 LALAKNPMVADYDLSSIRVVLSGAAPLGKELE  160 (240)
Q Consensus       129 ~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~  160 (240)
                      ..+.+.....+  +..--.+++||.+++++..
T Consensus       100 ~~~i~~l~~~g--~~d~v~vivGG~~~~~~~a  129 (160)
T d1xrsb1         100 THLIELLEAEG--LRDRFVLLCGGPRINNEIA  129 (160)
T ss_dssp             HHHHHHHHHTT--CGGGSEEEEECTTCCHHHH
T ss_pred             HHHHHHHHHcC--CCCceEEEEcCCCCCHHHH
Confidence            33333322221  1111247788888887654


No 17 
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=56.33  E-value=10  Score=24.41  Aligned_cols=94  Identities=16%  Similarity=0.037  Sum_probs=56.0

Q ss_pred             CcEEEEecc-hHHhhhhHHHHHHHhhcCceEEEccC-CCHHHHHHHHHhccceeeeech------HHHHHHHhCCCCCCC
Q 039504           69 GDVVLCVLP-LFHIYSLNSVLLCSLRAGAGVLLMQK-FEIGALLELIQRHRVSVAAVVP------PLVLALAKNPMVADY  140 (240)
Q Consensus        69 ~d~~l~~~p-~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l~~~p------~~~~~l~~~~~~~~~  140 (240)
                      ..+++.... -.|..|....-...-..|.-++.... ..++++.+...+.++.++..+.      ..+..+.+.....+ 
T Consensus        38 pkVlla~~g~D~Hd~G~~~va~~l~~~G~eVi~lg~~~~~e~iv~aa~~~~advI~iSs~~~~~~~~~~~l~~~L~~~g-  116 (168)
T d7reqa2          38 PRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLG-  116 (168)
T ss_dssp             CEEEEECBTTCCCCHHHHHHHHHHHHTTCEEEECCTTBCHHHHHHHHHHHTCSEEEEEECSSCHHHHHHHHHHHHHHTT-
T ss_pred             CeEEEEeCCccHHHHHHHHHHHHHHhCCcceecCCCcCcHHHHHHHHHccCCCEEEEecCcccchHHHHHHHHHHHhcC-
Confidence            355554443 35777776333333456777766654 6899999999999998776643      23444444333222 


Q ss_pred             CccchhhhhccCCCCCHHHHHHHHHh
Q 039504          141 DLSSIRVVLSGAAPLGKELEDALRSR  166 (240)
Q Consensus       141 ~~~~lr~v~~~G~~~~~~~~~~~~~~  166 (240)
                       .+  +..++.|+.++++..+.+++.
T Consensus       117 -~~--~v~VivGG~ip~~d~~~l~~~  139 (168)
T d7reqa2         117 -RP--DILITVGGVIPEQDFDELRKD  139 (168)
T ss_dssp             -CT--TSEEEEEESCCGGGHHHHHHH
T ss_pred             -CC--CeEEEEeCCCCHHHHHHHHhC
Confidence             11  233344446777777877775


No 18 
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}
Probab=52.45  E-value=16  Score=22.53  Aligned_cols=96  Identities=15%  Similarity=0.097  Sum_probs=56.6

Q ss_pred             CCcEEEEecch-HHhhhhHHHHHHHhhcCceEEEcc-CCCHHHHHHHHHhccceeeeechHH------HHHHHhCCCCCC
Q 039504           68 NGDVVLCVLPL-FHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSVAAVVPPL------VLALAKNPMVAD  139 (240)
Q Consensus        68 ~~d~~l~~~p~-~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~------~~~l~~~~~~~~  139 (240)
                      ...+++.+.+- .|..|..+.-...-..|..++... ...++++.+++.++++..+..+..+      ++.+.+..+.. 
T Consensus         3 k~kVvi~~~~gD~H~lG~~mva~~l~~~G~~V~~LG~~~p~e~iv~a~~~~~~d~v~lS~~~~~~~~~~~~~~~~l~~~-   81 (137)
T d1ccwa_           3 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEA-   81 (137)
T ss_dssp             CCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHT-
T ss_pred             CCEEEEEecCCChhHHHHHHHHHHHHHCCCeEEecccccCHHHHHHHHHhcCCCEEEEeeccccchHHHHHHHHHHHHh-
Confidence            34555555543 666777644444456788888775 4788999999999999987764321      11121111111 


Q ss_pred             CCccchhhhhccCCCC-----CHHHHHHHHHh
Q 039504          140 YDLSSIRVVLSGAAPL-----GKELEDALRSR  166 (240)
Q Consensus       140 ~~~~~lr~v~~~G~~~-----~~~~~~~~~~~  166 (240)
                       ....+. +++||...     .++..+++++.
T Consensus        82 -~~~~i~-iivGG~~~~~~~~~~~~~~~l~~~  111 (137)
T d1ccwa_          82 -GLEGIL-LYVGGNIVVGKQHWPDVEKRFKDM  111 (137)
T ss_dssp             -TCTTCE-EEEEESCSSSSCCHHHHHHHHHHT
T ss_pred             -ccCCCE-EEEeCCcCCCccccHHHHHHHHHc
Confidence             122233 66777654     36677777664


No 19 
>d1iqoa_ d.214.1.1 (A:) Hypothetical protein MTH1880 {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}
Probab=36.34  E-value=13  Score=20.83  Aligned_cols=40  Identities=18%  Similarity=0.115  Sum_probs=27.1

Q ss_pred             CcchhhHhhcCCCC------CCCCCCCCCCcEEEecCCCCCCCCce
Q 039504            2 CLHFTVLSEADEDQ------IPEVAIEPDDPVALPFSSGTTGLPKG   41 (240)
Q Consensus         2 ~~~~~~l~~~~~~~------~~~~~~~~~~~~~i~~TSGtTG~pk~   41 (240)
                      ++++.||.++.++.      .....+++++...|+.-+|||..--.
T Consensus         9 i~~~~eL~ee~~~~v~~kA~~~~~~L~d~~~vAIlnI~gTtSy~v~   54 (88)
T d1iqoa_           9 IFTLKDLPEEFRPFVDYKAGLEKKKLSDDDEIAIISIKGTQSNHVL   54 (88)
T ss_dssp             EECSTTCSTTTCCSTHHHHTTTTCCCSSCCCEEEEECTTTTCCEEE
T ss_pred             EEEHHHcchhhhhheEeeeecchhcCCCCCcEEEEEecCCceEEEE
Confidence            45566655444432      34566788999999999999986543


No 20 
>d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]}
Probab=34.71  E-value=8.9  Score=27.47  Aligned_cols=75  Identities=19%  Similarity=0.161  Sum_probs=39.3

Q ss_pred             CCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCcc---------chhhhhccCCCCCHHHHHHHHHhCCCCcccc
Q 039504          104 FEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLS---------SIRVVLSGAAPLGKELEDALRSRVPQAILGQ  174 (240)
Q Consensus       104 ~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~---------~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~  174 (240)
                      .+|++..+++++.+++.+...--...-+.+.......++.         .+.+++-||..+++++..++...  +..++.
T Consensus       153 T~peea~~Fv~~TgvD~LAvaiGn~HG~Yk~~~~~~l~~~~l~~I~~~~~~PLVlHGgS~vp~~~~~~~~~~--g~~lhg  230 (305)
T d1rvga_         153 TNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLVPAPLVLHGASAVPPELVERFRAS--GGEIGE  230 (305)
T ss_dssp             CCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHCCSCEEECSCCCCCHHHHHHHHHT--TCCCCS
T ss_pred             CCHHHHHHHHHHhCccHhhhhhhhhhcccCCCCcccchHHHHHHHHhccCCCeeccCCccccHHHHhhhccc--CcccCC
Confidence            4688888888888877665432211111111111111221         24456667776676666666554  445555


Q ss_pred             cccccc
Q 039504          175 GYGMTE  180 (240)
Q Consensus       175 ~yG~tE  180 (240)
                      .+|.++
T Consensus       231 ~sG~~~  236 (305)
T d1rvga_         231 AAGIHP  236 (305)
T ss_dssp             CBCCCH
T ss_pred             CCCCCH
Confidence            555544


No 21 
>d1uhra_ a.42.1.1 (A:) SWI/SNF related regulator of chromatin (BRG1-associated factor 60a) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.55  E-value=11  Score=21.54  Aligned_cols=16  Identities=38%  Similarity=0.605  Sum_probs=12.8

Q ss_pred             CCCCCCCCceeeeehH
Q 039504           32 SSGTTGLPKGVVLTHK   47 (240)
Q Consensus        32 TSGtTG~pk~v~~s~~   47 (240)
                      +||+||.|+...++..
T Consensus         2 ~~~~sg~p~~~~lS~~   17 (93)
T d1uhra_           2 SSGSSGQPPQFKLDPR   17 (93)
T ss_dssp             CCCCSSSCCEEEECTT
T ss_pred             CCCCCCCCCCCCCCHH
Confidence            6899999988877653


No 22 
>d1v31a_ a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl11-05-p19) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=28.88  E-value=13  Score=21.17  Aligned_cols=16  Identities=38%  Similarity=0.694  Sum_probs=13.2

Q ss_pred             CCCCCCCCceeeeehH
Q 039504           32 SSGTTGLPKGVVLTHK   47 (240)
Q Consensus        32 TSGtTG~pk~v~~s~~   47 (240)
                      +||+||.|+...++-.
T Consensus         2 ~~~~~G~~~~~~lS~~   17 (93)
T d1v31a_           2 SSGSSGVPEKFKLSTA   17 (93)
T ss_dssp             CSSCCSSCCCEECCHH
T ss_pred             CCCCCCCcCCccCCHH
Confidence            6899999998887754


No 23 
>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=27.22  E-value=19  Score=21.80  Aligned_cols=71  Identities=11%  Similarity=0.106  Sum_probs=43.9

Q ss_pred             ceEEEccCCCHHHHHHHHHhccceeeeechHHHHHHHhCCCCCCCCccchhhhhccCCCCCHHHHHHHHHhCCCCccccc
Q 039504           96 AGVLLMQKFEIGALLELIQRHRVSVAAVVPPLVLALAKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQG  175 (240)
Q Consensus        96 ~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~  175 (240)
                      ..+.+.+..+.+++.+.+++..+-++...+.+=+.+++.       .++||.|...|...+.=..+.+.+.  +..+.|.
T Consensus        23 ~~v~~~~~~~~~el~~~~~~~d~ii~~~~~~i~~~~l~~-------~p~Lk~I~~~g~G~d~IDl~~~~~~--gI~V~n~   93 (130)
T d1ygya2          23 VEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAA-------APKLKIVARAGVGLDNVDVDAATAR--GVLVVNA   93 (130)
T ss_dssp             SEEEECCTTSHHHHHHHGGGCSEEEECSSSCBCHHHHHT-------CTTCCEEEESSSCCTTBCHHHHHHT--TCEEECC
T ss_pred             cEEEECCCCCHHHHHHHcCCCEEEEEcCcccchHHHHhh-------cccceEEeeecccccchhHHHHHHC--CceEEec
Confidence            355555666778888888776654333222223334433       2467888888877776666777776  7777665


Done!