BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039506
         (424 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EGJ|A Chain A, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
           Cholerae.
 pdb|3EGJ|B Chain B, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
           Cholerae.
 pdb|3IV8|A Chain A, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
           Cholerae Complexed With Fructose 6-Phosphate
 pdb|3IV8|B Chain B, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
           Cholerae Complexed With Fructose 6-Phosphate
 pdb|3IV8|C Chain C, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
           Cholerae Complexed With Fructose 6-Phosphate
 pdb|3IV8|D Chain D, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
           Cholerae Complexed With Fructose 6-Phosphate
          Length = 381

 Score = 34.3 bits (77), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 308 IYAGIIASA--VNYGLITWSNKILGPALVALYNPLQPAASAFLSKIFLGSPIY 358
           +YAGIIA    V+Y  I  ++KI G  LV + +   PA +     IF+G  +Y
Sbjct: 241 VYAGIIADGFHVDYANIRIAHKIKGEKLVLVTDATAPAGAEMDYFIFVGKKVY 293


>pdb|2P53|A Chain A, Crystal Structure Of N-acetyl-d-glucosamine-6-phosphate
           Deacetylase D273n Mutant Complexed With N-acetyl
           Phosphonamidate-d-glucosamine-6- Phosphate
 pdb|2P53|B Chain B, Crystal Structure Of N-acetyl-d-glucosamine-6-phosphate
           Deacetylase D273n Mutant Complexed With N-acetyl
           Phosphonamidate-d-glucosamine-6- Phosphate
          Length = 382

 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 306 AVIYAGIIASA--VNYGLITWSNKILGPALVALYNPLQPAASAFLSKIFLGSPIY 358
           A IY GIIA    V+Y  I  + ++ G  L  + N   PA +     IF G  IY
Sbjct: 239 ADIYCGIIADGLHVDYANIRNAKRLKGDKLCLVTNATAPAGANIEQFIFAGKTIY 293


>pdb|1Q44|A Chain A, Crystal Structure Of An Arabidopsis Thaliana Putative
           Steroid Sulfotransferase
 pdb|2Q3M|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of An
           Arabidopsis Thaliana Putative Steroid Sulphotransferase
          Length = 326

 Score = 30.4 bits (67), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 203 GNEDFVGENEVRVRGQPEPVGWLLSNFIDI-GLDQWHLGVLCLIGNCMCMAAFIAIQAPI 261
           G+ED   E    +   P+  GWL+S   +  GL  WH   + L G  +C   F A  + I
Sbjct: 12  GDEDLTQETRALISSLPKEKGWLVSEIYEFQGL--WHTQAI-LQGILICQKRFEAKDSDI 68

Query: 262 L 262
           +
Sbjct: 69  I 69


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.141    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,342,572
Number of Sequences: 62578
Number of extensions: 448697
Number of successful extensions: 817
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 816
Number of HSP's gapped (non-prelim): 4
length of query: 424
length of database: 14,973,337
effective HSP length: 101
effective length of query: 323
effective length of database: 8,652,959
effective search space: 2794905757
effective search space used: 2794905757
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)