Query 039506
Match_columns 424
No_of_seqs 183 out of 1513
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 17:48:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039506.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039506hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.8 2.1E-09 7E-14 90.5 5.1 71 309-379 34-105 (137)
2 3b5d_A Multidrug transporter E 98.6 5.4E-07 1.9E-11 72.9 11.8 70 309-378 34-104 (110)
3 3b5d_A Multidrug transporter E 98.4 3.4E-06 1.2E-10 68.2 11.4 69 119-193 34-103 (110)
4 2i68_A Protein EMRE; transmemb 98.3 7.3E-07 2.5E-11 74.8 5.8 70 119-194 34-104 (137)
5 3b9w_A Ammonium transporter fa 63.2 1.1E+02 0.0039 29.6 24.5 61 308-369 263-330 (407)
6 1pw4_A Glycerol-3-phosphate tr 26.8 3.9E+02 0.013 24.8 21.2 17 152-168 196-212 (451)
7 2xq2_A Sodium/glucose cotransp 23.4 5.2E+02 0.018 26.0 11.3 30 344-373 533-562 (593)
8 3hd6_A Ammonium transporter RH 22.9 5.6E+02 0.019 25.3 23.6 53 139-192 181-234 (490)
9 3rko_J NADH-quinone oxidoreduc 20.5 3.9E+02 0.013 22.6 8.9 32 346-377 127-160 (184)
10 4djk_A Probable glutamate/gamm 20.2 2E+02 0.0067 28.1 7.2 14 363-376 450-463 (511)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.84 E-value=2.1e-09 Score=90.47 Aligned_cols=71 Identities=20% Similarity=0.282 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhhHhhh-cchhHHHHHHHHHHHcCCCcchhhHHHHHHHHHhhheeeeec
Q 039506 309 YAGIIASAVNYGLITWSNKILGPALVALY-NPLQPAASAFLSKIFLGSPIYLGSVLGGCLIIAGLYMVTWVS 379 (424)
Q Consensus 309 ~~g~~~~~~~~~l~~~a~~~~~~~~~s~~-~~~~pi~~~l~~~l~~~e~~~~~~~lG~~lii~g~~l~~~~~ 379 (424)
.++++++++++.++.+++++.+++.+..+ ..+.|+++++++++++||++++.+++|+++|++|+++....+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 35677889999999999999999999998 899999999999999999999999999999999999887543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.59 E-value=5.4e-07 Score=72.90 Aligned_cols=70 Identities=19% Similarity=0.275 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhhHhhh-cchhHHHHHHHHHHHcCCCcchhhHHHHHHHHHhhheeeee
Q 039506 309 YAGIIASAVNYGLITWSNKILGPALVALY-NPLQPAASAFLSKIFLGSPIYLGSVLGGCLIIAGLYMVTWV 378 (424)
Q Consensus 309 ~~g~~~~~~~~~l~~~a~~~~~~~~~s~~-~~~~pi~~~l~~~l~~~e~~~~~~~lG~~lii~g~~l~~~~ 378 (424)
..++++..+++.++.+++|+.+.+.+..+ ..+.|+.+.+++++++||++++.+++|+.++++|+++....
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35566778899999999999999999888 89999999999999999999999999999999999987653
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.38 E-value=3.4e-06 Score=68.18 Aligned_cols=69 Identities=20% Similarity=0.190 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccCcchhhhc-ccchHHHHHHHHHHHhhcccccccccccchhhHHHHHHHhHhhhhh
Q 039506 119 FLGLTGIFGNQLLFLLGLSYTNPTYAAAI-QPSIPVFTFLLAVMMGTERVNLLTTEGQAKVGGTFICVSGAILMVL 193 (424)
Q Consensus 119 ~~g~lg~~~~~~~~~~al~~~~~~~a~ii-~~l~Pi~~~lla~l~l~e~~~~~~~~~~~~~~g~~l~i~Gv~li~~ 193 (424)
..+.++..+++.++..++++.|.+.+..+ ..+.|+++.+++++++||+++..+ ++|+.+.+.|++++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~------~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence 45566688999999999999999999998 799999999999999999999999 9999999999999864
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.30 E-value=7.3e-07 Score=74.83 Aligned_cols=70 Identities=20% Similarity=0.197 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccCcchhhhc-ccchHHHHHHHHHHHhhcccccccccccchhhHHHHHHHhHhhhhhc
Q 039506 119 FLGLTGIFGNQLLFLLGLSYTNPTYAAAI-QPSIPVFTFLLAVMMGTERVNLLTTEGQAKVGGTFICVSGAILMVLF 194 (424)
Q Consensus 119 ~~g~lg~~~~~~~~~~al~~~~~~~a~ii-~~l~Pi~~~lla~l~l~e~~~~~~~~~~~~~~g~~l~i~Gv~li~~~ 194 (424)
+.++++..++++++..++++.|++.+..+ .++.|+++.++++++++|+++..+ ++|+++.++|++++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~------~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------C------HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhcC
Confidence 45666689999999999999999999999 799999999999999999999999 99999999999999753
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=63.21 E-value=1.1e+02 Score=29.61 Aligned_cols=61 Identities=13% Similarity=0.122 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHH-------HHhhccChhhHhhhcchhHHHHHHHHHHHcCCCcchhhHHHHHHHH
Q 039506 308 IYAGIIASAVNYGLIT-------WSNKILGPALVALYNPLQPAASAFLSKIFLGSPIYLGSVLGGCLII 369 (424)
Q Consensus 308 ~~~g~~~~~~~~~l~~-------~a~~~~~~~~~s~~~~~~pi~~~l~~~l~~~e~~~~~~~lG~~lii 369 (424)
+.+|+++..+++.... +-++.-++..+-.+=-.-=+++.+..-++ ....+..|++|.+.++
T Consensus 263 ~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glf-a~~~~~~Ql~g~~~~~ 330 (407)
T 3b9w_A 263 FVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHGLPGLLGGFSAILI-VPGIAVAQLTGIGITL 330 (407)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHTTHHHHHHHHHHHHH-STTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecchHHHHHHHHHHHHH-ccCCcHHHHHHHHHHH
Confidence 4445555555554332 11355566666555555666666665443 3333557888887763
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=26.81 E-value=3.9e+02 Score=24.80 Aligned_cols=17 Identities=18% Similarity=0.254 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhhcccc
Q 039506 152 PVFTFLLAVMMGTERVN 168 (424)
Q Consensus 152 Pi~~~lla~l~l~e~~~ 168 (424)
.+...++.+++.+|++.
T Consensus 196 ~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 196 AILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHhhccCCHh
Confidence 33444555566666554
No 7
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=23.40 E-value=5.2e+02 Score=26.00 Aligned_cols=30 Identities=10% Similarity=-0.132 Sum_probs=20.3
Q ss_pred HHHHHHHHHcCCCcchhhHHHHHHHHHhhh
Q 039506 344 ASAFLSKIFLGSPIYLGSVLGGCLIIAGLY 373 (424)
Q Consensus 344 ~~~l~~~l~~~e~~~~~~~lG~~lii~g~~ 373 (424)
..++.-++++.+.....-.++..++++|++
T Consensus 533 ~~~~~~~~~f~~~~~~~i~l~v~~~~~~~~ 562 (593)
T 2xq2_A 533 IVLAVLYTLFWVNADAEITLIIFGVMAGVI 562 (593)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 333444455677777777788888888876
No 8
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=22.89 E-value=5.6e+02 Score=25.34 Aligned_cols=53 Identities=8% Similarity=0.083 Sum_probs=23.4
Q ss_pred cCcchhhhcccchHHHHHHHHHHHhhcccccc-cccccchhhHHHHHHHhHhhhh
Q 039506 139 TNPTYAAAIQPSIPVFTFLLAVMMGTERVNLL-TTEGQAKVGGTFICVSGAILMV 192 (424)
Q Consensus 139 ~~~~~a~ii~~l~Pi~~~lla~l~l~e~~~~~-~~~~~~~~~g~~l~i~Gv~li~ 192 (424)
.+.+-...+-...-......++++. +|-... +......--...++.+|..++-
T Consensus 181 ~DFAGs~vVH~~gG~aaLa~a~vLG-~R~~~~~~~~~~~~~hn~~~a~LGt~lLW 234 (490)
T 3hd6_A 181 KDAGGSMTIHTFGAYFGLTVTRILY-RRNLEQSKERQNSVYQSDLFAMIGTLFLW 234 (490)
T ss_dssp CCTTCTTTTHHHHHHHHHHHHHHTC-CTTGGGGTTTSSCCHHHHHHHHHHHHHHH
T ss_pred eeecCceeeeHHHHHHHHHHHHhcC-CcccccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 3444444554445555555554443 331100 0001111345666777777765
No 9
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=20.50 E-value=3.9e+02 Score=22.63 Aligned_cols=32 Identities=9% Similarity=0.061 Sum_probs=23.6
Q ss_pred HHHHHHHcCCCcchhhHHHHHHHH--Hhhheeee
Q 039506 346 AFLSKIFLGSPIYLGSVLGGCLII--AGLYMVTW 377 (424)
Q Consensus 346 ~l~~~l~~~e~~~~~~~lG~~lii--~g~~l~~~ 377 (424)
--+|..++++..-+-+.++.+|.+ +|.+...+
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLar 160 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVGR 160 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888999999999999988864 45454443
No 10
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=20.16 E-value=2e+02 Score=28.08 Aligned_cols=14 Identities=14% Similarity=0.285 Sum_probs=6.5
Q ss_pred HHHHHHHHhhheee
Q 039506 363 LGGCLIIAGLYMVT 376 (424)
Q Consensus 363 lG~~lii~g~~l~~ 376 (424)
.+..+++.++..+.
T Consensus 450 ~~~~~~~~~i~~~~ 463 (511)
T 4djk_A 450 VVSFLVVLALPFIL 463 (511)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
Done!