Query 039506
Match_columns 424
No_of_seqs 183 out of 1513
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 17:48:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039506.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039506hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 47.5 83 0.0061 27.1 20.8 18 149-166 190-207 (447)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 17.0 66 0.0048 16.4 2.7 17 239-255 3-19 (27)
3 d1iwga8 f.35.1.1 (A:513-566,A: 8.7 4.2E+02 0.031 20.6 11.2 31 343-373 95-125 (222)
4 d1iwga7 f.35.1.1 (A:7-37,A:331 4.9 5.5E+02 0.04 19.4 5.8 47 327-373 61-107 (199)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 4.7 7.9E+02 0.057 19.9 22.5 11 74-84 53-63 (447)
6 d2axtt1 f.23.34.1 (T:1-30) Pho 4.4 2.8E+02 0.021 14.2 2.8 13 345-357 15-27 (30)
7 d1rzhh2 f.23.10.1 (H:11-35) Ph 3.7 2.2E+02 0.016 14.3 1.3 17 5-21 4-20 (26)
8 d2axtl1 f.23.31.1 (L:1-37) Pho 3.4 4.1E+02 0.03 14.5 3.7 24 232-255 12-35 (37)
9 d2nr9a1 f.51.1.1 (A:4-192) Glp 3.1 8.6E+02 0.063 17.7 10.5 130 84-264 60-189 (189)
10 d2axti1 f.23.37.1 (I:1-35) Pho 2.8 2.3E+02 0.017 15.5 0.9 30 9-38 6-35 (35)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=47.50 E-value=83 Score=27.05 Aligned_cols=18 Identities=17% Similarity=0.194 Sum_probs=8.8
Q ss_pred cchHHHHHHHHHHHhhcc
Q 039506 149 PSIPVFTFLLAVMMGTER 166 (424)
Q Consensus 149 ~l~Pi~~~lla~l~l~e~ 166 (424)
....+...++.+.+.+|+
T Consensus 190 ~~~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 190 AFCAILVALFAFAMMRDT 207 (447)
T ss_dssp HHHHHHHHHHHHHHCCCS
T ss_pred hhhHHHHHHHHHHhcccc
Confidence 334444455555555543
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=16.95 E-value=66 Score=16.42 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039506 239 LGVLCLIGNCMCMAAFI 255 (424)
Q Consensus 239 ~G~l~~l~a~l~~a~~~ 255 (424)
.|.+.+-+++++|+.|.
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 67788888999998875
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=8.71 E-value=4.2e+02 Score=20.60 Aligned_cols=31 Identities=19% Similarity=0.023 Sum_probs=22.4
Q ss_pred HHHHHHHHHHcCCCcchhhHHHHHHHHHhhh
Q 039506 343 AASAFLSKIFLGSPIYLGSVLGGCLIIAGLY 373 (424)
Q Consensus 343 i~~~l~~~l~~~e~~~~~~~lG~~lii~g~~ 373 (424)
+.+.+.+..+.+.+++....+|+++.+.-.+
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v 125 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGLSA 125 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhhhh
Confidence 3445566777899999999888888654443
No 4
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=4.90 E-value=5.5e+02 Score=19.42 Aligned_cols=47 Identities=17% Similarity=0.101 Sum_probs=27.0
Q ss_pred hccChhhHhhhcchhHHHHHHHHHHHcCCCcchhhHHHHHHHHHhhh
Q 039506 327 KILGPALVALYNPLQPAASAFLSKIFLGSPIYLGSVLGGCLIIAGLY 373 (424)
Q Consensus 327 ~~~~~~~~s~~~~~~pi~~~l~~~l~~~e~~~~~~~lG~~lii~g~~ 373 (424)
+...+.....+...-.+...+....++|..++.....+..+.++..+
T Consensus 61 rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~v 107 (199)
T d1iwga7 61 QNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLV 107 (199)
T ss_dssp CCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHH
T ss_pred hhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhc
Confidence 33333444444444444444555567788888887777776665544
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.74 E-value=7.9e+02 Score=19.86 Aligned_cols=11 Identities=9% Similarity=0.042 Sum_probs=5.3
Q ss_pred hcCCChHHHHH
Q 039506 74 NVGVNQLVFCV 84 (424)
Q Consensus 74 ~~~~~~~~~~~ 84 (424)
+.|+++.++..
T Consensus 53 ~~g~s~~~~g~ 63 (447)
T d1pw4a_ 53 EQGFSRGDLGF 63 (447)
T ss_dssp SSTTCSSCHHH
T ss_pred HhCcCHHHHHH
Confidence 44565554433
No 6
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.39 E-value=2.8e+02 Score=14.16 Aligned_cols=13 Identities=31% Similarity=0.588 Sum_probs=6.2
Q ss_pred HHHHHHHHcCCCc
Q 039506 345 SAFLSKIFLGSPI 357 (424)
Q Consensus 345 ~~l~~~l~~~e~~ 357 (424)
+..+=.++++|+|
T Consensus 15 ~lfffaiffrepp 27 (30)
T d2axtt1 15 ALFFFAIFFREPP 27 (30)
T ss_dssp HHHHHHHHTSCCC
T ss_pred HHHHHHHHhcCCC
Confidence 3333344556655
No 7
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.70 E-value=2.2e+02 Score=14.33 Aligned_cols=17 Identities=29% Similarity=0.716 Sum_probs=10.1
Q ss_pred cchhHHHHHhhhhhhhh
Q 039506 5 SSSILHIYIYFGFLVYF 21 (424)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (424)
|-+|--.++||..++|.
T Consensus 4 slaiw~fw~ffalli~y 20 (26)
T d1rzhh2 4 SLAIYSFWIFLAGLIYY 20 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555566666666654
No 8
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.36 E-value=4.1e+02 Score=14.45 Aligned_cols=24 Identities=13% Similarity=0.337 Sum_probs=17.0
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHH
Q 039506 232 IGLDQWHLGVLCLIGNCMCMAAFI 255 (424)
Q Consensus 232 ~~~~~~~~G~l~~l~a~l~~a~~~ 255 (424)
+...+.-+|.++.+.-++.++-|.
T Consensus 12 LNrtsLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 12 LNRTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHh
Confidence 344566788888888777777664
No 9
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=3.10 E-value=8.6e+02 Score=17.72 Aligned_cols=130 Identities=9% Similarity=-0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchhhhcccchHHHHHHHHHHHh
Q 039506 84 VFRDLLALSILAPIAYFREKRTRLPMTRRLLMSFFFLGLTGIFGNQLLFLLGLSYTNPTYAAAIQPSIPVFTFLLAVMMG 163 (424)
Q Consensus 84 ~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~lg~~~~~~~~~~al~~~~~~~a~ii~~l~Pi~~~lla~l~l 163 (424)
....+..++.+..+...-+++.. +++....++..++++..+..... ...........-.+++....
T Consensus 60 ~~Hl~~N~~~l~~~g~~~E~~~G---~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~vGaSG~v~gl~~~~~~ 125 (189)
T d2nr9a1 60 NLHILFNLSWFFIFGGMIERTFG---SVKLLMLYVVASAITGYVQNYVS-----------GPAFFGLSGVVYAVLGYVFI 125 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHH-----------CSCCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHhcC-----------CCCcccchHHHHHHHHHHHH
Q ss_pred hcccccccccccchhhHHHHHHHhHhhhhhccCCcccCCCCCCCccccccccCCCCCCcccccccccccCchhhHHHHHH
Q 039506 164 TERVNLLTTEGQAKVGGTFICVSGAILMVLFRGPALFGCGNEDFVGENEVRVRGQPEPVGWLLSNFIDIGLDQWHLGVLC 243 (424)
Q Consensus 164 ~e~~~~~~~~~~~~~~g~~l~i~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~l~ 243 (424)
.++.++.............+.......+....++. ....+.+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------v~~~aHl~ 168 (189)
T d2nr9a1 126 RDKLNHHLFDLPEGFFTMLLVGIALGFISPLFGVE-------------------------------------MGNAAHIS 168 (189)
T ss_dssp HHHSSTTSCCCCCSSTTTTTTTTTHHHHSCSSCCT-------------------------------------TCHHHHHH
T ss_pred HHHHhhhHhccHHHHHHHHHHHHHHHHHHhccCCC-------------------------------------hHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 039506 244 LIGNCMCMAAFIAIQAPILRK 264 (424)
Q Consensus 244 ~l~a~l~~a~~~v~~k~~~~~ 264 (424)
++++++.++...--.||-..+
T Consensus 169 G~l~G~~~g~~~~~~~k~~~~ 189 (189)
T d2nr9a1 169 GLIVGLIWGFIDSKLRKNSLE 189 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcccccccC
No 10
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.78 E-value=2.3e+02 Score=15.46 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhhheeecccccccccccccc
Q 039506 9 LHIYIYFGFLVYFFIEAKQRTLHDETKNFK 38 (424)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (424)
.+.|.-+.|+|..|+-.--.+.-.+..+.|
T Consensus 6 i~Vy~vV~fFv~lFiFGFLSnDP~RnP~rk 35 (35)
T d2axti1 6 ITVYIVVTFFVLLFVFGFLSGDPARNPKRK 35 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTCSSCCC
T ss_pred EehhhHHHHHHHHHHHhhccCCCCCCCCCC
Done!