BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039507
(108 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y7C|A Chain A, Atomic Model Of The Ocr-Bound Methylase Complex From The
Type I Restriction-Modification Enzyme Ecoki (M2s1).
Based On Fitting Into Em Map 1534.
pdb|2Y7H|A Chain A, Atomic Model Of The Dna-Bound Methylase Complex From The
Type I Restriction-Modification Enzyme Ecoki (M2s1).
Based On Fitting Into Em Map 1534
Length = 464
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 61 EDCAQLVKANSIQGNKVNNIDVVYTPWANLKKTA 94
+D L++AN+IQ K + D+V+ P NL K +
Sbjct: 38 DDYLPLIRANNIQNGKFDTTDLVFVP-KNLVKES 70
>pdb|4GTW|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Amp
pdb|4GTW|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Amp
Length = 823
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 63 CAQLVKANSIQGNKVNNIDVVYTPWANLKKT 93
C + V N G+ VNN+ VVY P A L+ T
Sbjct: 331 CKKYVYLNKYLGD-VNNVKVVYGPAARLRPT 360
>pdb|4GTX|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Tmp
pdb|4GTX|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Tmp
pdb|4GTY|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Gmp
pdb|4GTY|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Gmp
pdb|4GTZ|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Cmp
pdb|4GTZ|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Cmp
Length = 823
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 63 CAQLVKANSIQGNKVNNIDVVYTPWANLKKT 93
C + V N G+ VNN+ VVY P A L+ T
Sbjct: 331 CKKYVYLNKYLGD-VNNVKVVYGPAARLRPT 360
>pdb|4B56|A Chain A, Structure Of Ectonucleotide
Pyrophosphatase-Phosphodiesterase-1 (Npp1)
pdb|4B56|B Chain B, Structure Of Ectonucleotide
Pyrophosphatase-Phosphodiesterase-1 (Npp1)
Length = 820
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 63 CAQLVKANSIQGNKVNNIDVVYTPWANLKKT 93
C + V N G+ VNN+ VVY P A L+ T
Sbjct: 327 CKKYVYLNKYLGD-VNNVKVVYGPAARLRPT 356
>pdb|3TU6|A Chain A, The Structure Of A Pseudoazurin From Sinorhizobium
Meliltoi
Length = 127
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 1 RPEAGDYTIFMGLDKYENEELIKYGFPE 28
R + GD F+ DK N L+K G PE
Sbjct: 26 RAQPGDTVTFVAKDKGHNSALMKGGAPE 53
>pdb|2P9J|A Chain A, Crystal Structure Of Aq2171 From Aquifex Aeolicus
pdb|2P9J|B Chain B, Crystal Structure Of Aq2171 From Aquifex Aeolicus
pdb|2P9J|C Chain C, Crystal Structure Of Aq2171 From Aquifex Aeolicus
pdb|2P9J|D Chain D, Crystal Structure Of Aq2171 From Aquifex Aeolicus
pdb|2P9J|E Chain E, Crystal Structure Of Aq2171 From Aquifex Aeolicus
pdb|2P9J|F Chain F, Crystal Structure Of Aq2171 From Aquifex Aeolicus
pdb|2P9J|G Chain G, Crystal Structure Of Aq2171 From Aquifex Aeolicus
pdb|2P9J|H Chain H, Crystal Structure Of Aq2171 From Aquifex Aeolicus
Length = 162
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 10 FMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLV 67
F+G D + E K GFP + V+++ VY+ G EG L + A+L+
Sbjct: 105 FIGDDVVDIEVXKKVGFPVAVRNAVEEVRKVAVYITQRNG------GEGALREVAELI 156
>pdb|1ADW|A Chain A, Pseudoazurin
pdb|1ADW|B Chain B, Pseudoazurin
pdb|3ERX|A Chain A, High-Resolution Structure Of Paracoccus Pantotrophus
Pseudoazurin
pdb|3ERX|B Chain B, High-Resolution Structure Of Paracoccus Pantotrophus
Pseudoazurin
Length = 123
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 1 RPEAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKG 49
R E GD F+ DK N E IK PE + K++ ++ G
Sbjct: 24 RAEPGDVINFVPTDKSHNVEAIKEILPEGVESFKSKINESYTLTVTEPG 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,490,309
Number of Sequences: 62578
Number of extensions: 129274
Number of successful extensions: 353
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 11
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)