BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039507
(108 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6GLE1|CCD25_XENTR Coiled-coil domain-containing protein 25 OS=Xenopus tropicalis
GN=ccdc25 PE=2 SV=1
Length = 206
Score = 175 bits (443), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 80/101 (79%), Positives = 91/101 (90%)
Query: 7 YTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQL 66
YT++MG DKYENE+LIKYG+PEDIWFHVDK+SSAHVYLRL K QTI+DI + VL DCAQL
Sbjct: 14 YTMYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLQKDQTIEDIPKEVLLDCAQL 73
Query: 67 VKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPK 107
VKANSIQG K+NNI+VVYTPWANLKKTA MD+GQ+GFH K
Sbjct: 74 VKANSIQGCKMNNINVVYTPWANLKKTADMDIGQIGFHRQK 114
>sp|Q3SZX8|CCD25_BOVIN Coiled-coil domain-containing protein 25 OS=Bos taurus GN=CCDC25
PE=2 SV=1
Length = 208
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 79/104 (75%), Positives = 92/104 (88%)
Query: 4 AGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDC 63
+ YTI+MG DKYENE+LIKYG+PEDIWFHVDK+SSAHVYLRLHKG+ I+DI + VL DC
Sbjct: 12 SSAYTIYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLHKGEKIEDIPKEVLMDC 71
Query: 64 AQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPK 107
A LVKANSIQG K+NN++VVYTPW+NLKKTA MDVGQ+GFH K
Sbjct: 72 AHLVKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQK 115
>sp|Q5R9S1|CCD25_PONAB Coiled-coil domain-containing protein 25 OS=Pongo abelii GN=CCDC25
PE=2 SV=2
Length = 208
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 78/101 (77%), Positives = 91/101 (90%)
Query: 7 YTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQL 66
YTI+MG DKYENE+LIK+G+PEDIWFHVDK+SSAHVYLRLHKG+ I+DI + VL DCA L
Sbjct: 15 YTIYMGKDKYENEDLIKHGWPEDIWFHVDKLSSAHVYLRLHKGENIEDIPKEVLMDCAHL 74
Query: 67 VKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPK 107
VKANSIQG K+NN++VVYTPW+NLKKTA MDVGQ+GFH K
Sbjct: 75 VKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQK 115
>sp|Q86WR0|CCD25_HUMAN Coiled-coil domain-containing protein 25 OS=Homo sapiens GN=CCDC25
PE=1 SV=2
Length = 208
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 78/101 (77%), Positives = 91/101 (90%)
Query: 7 YTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQL 66
YTI+MG DKYENE+LIK+G+PEDIWFHVDK+SSAHVYLRLHKG+ I+DI + VL DCA L
Sbjct: 15 YTIYMGKDKYENEDLIKHGWPEDIWFHVDKLSSAHVYLRLHKGENIEDIPKEVLMDCAHL 74
Query: 67 VKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPK 107
VKANSIQG K+NN++VVYTPW+NLKKTA MDVGQ+GFH K
Sbjct: 75 VKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQK 115
>sp|Q78PG9|CCD25_MOUSE Coiled-coil domain-containing protein 25 OS=Mus musculus GN=Ccdc25
PE=1 SV=1
Length = 208
Score = 172 bits (437), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 78/104 (75%), Positives = 91/104 (87%)
Query: 4 AGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDC 63
+ YTI+MG DKYENE+LIKYG+PEDIWFHVDK+SSAHVYLRL KG+ I+DI + VL DC
Sbjct: 12 SSTYTIYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLQKGEKIEDIPKEVLMDC 71
Query: 64 AQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPK 107
A LVKANSIQG K+NN++VVYTPW+NLKKTA MDVGQ+GFH K
Sbjct: 72 AHLVKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQK 115
>sp|Q7T312|CCD25_DANRE Coiled-coil domain-containing protein 25 OS=Danio rerio GN=ccdc25
PE=1 SV=1
Length = 207
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 76/101 (75%), Positives = 89/101 (88%)
Query: 7 YTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQL 66
+TI+MG DKYENE+LIKYG+PEDIWFHVDK+SSAHVYLR+ KG TIDDI + VL DC QL
Sbjct: 14 HTIYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRMPKGTTIDDIPKEVLIDCVQL 73
Query: 67 VKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPK 107
VK NSIQG K+NNI++VYTPW+NLKKTA MD+GQ+GFH K
Sbjct: 74 VKNNSIQGCKMNNINIVYTPWSNLKKTADMDIGQIGFHRQK 114
>sp|Q55D55|CCD25_DICDI Coiled-coil domain-containing protein 25 homolog OS=Dictyostelium
discoideum GN=ccdc25 PE=3 SV=1
Length = 206
Score = 153 bits (386), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 66/102 (64%), Positives = 85/102 (83%)
Query: 6 DYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQ 65
+Y +MG+DK+ENE+LIKYG+PED+WFHV+ +SSAHVYLRL KG+T +DI +LE+C Q
Sbjct: 11 EYICYMGIDKFENEDLIKYGWPEDVWFHVNDLSSAHVYLRLRKGETWNDIPANILEECCQ 70
Query: 66 LVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPK 107
LVK NSIQG K ++D+VYTPWANLKKTA M+ GQV +HN +
Sbjct: 71 LVKQNSIQGCKEASVDIVYTPWANLKKTAGMEAGQVLYHNER 112
>sp|P40206|JLP2_YEAST Protein JLP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=JLP2 PE=1 SV=2
Length = 208
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 67/100 (67%), Gaps = 3/100 (3%)
Query: 7 YTIFMGLDKYENEELIKYGFPE--DIWFHVDKMSSAHVYLRLHKGQ-TIDDISEGVLEDC 63
Y I MG DK+EN+ LIK+ + E +WFH DK SS HVYL+L + TIDDI + V+ DC
Sbjct: 16 YQIVMGKDKFENDLLIKWSYRELNYVWFHADKYSSGHVYLKLRPNEKTIDDIPQEVICDC 75
Query: 64 AQLVKANSIQGNKVNNIDVVYTPWANLKKTASMDVGQVGF 103
QL K+ SIQGNK+ ++ TPW NL+K M+ G+V F
Sbjct: 76 LQLCKSESIQGNKMPQCTILITPWHNLRKNRYMNPGEVSF 115
>sp|B8DBU2|LEUC_LISMH 3-isopropylmalate dehydratase large subunit OS=Listeria
monocytogenes serotype 4a (strain HCC23) GN=leuC PE=3
SV=1
Length = 462
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 17/73 (23%)
Query: 40 AHVYLRLHKGQTIDDISEGV-------------LEDCAQLVKANSIQGNKVNNIDVVYTP 86
A+ Y+ L GQT ++I G LE+ A++VK N ++ NNI + P
Sbjct: 312 AYEYMGLKPGQTAEEIELGYVFIGSCTNARLSDLEEAARIVKGNKVK----NNIRALVVP 367
Query: 87 WANLKKTASMDVG 99
+ + A+ +G
Sbjct: 368 GSRQVRNAAESIG 380
>sp|Q71Y33|LEUC_LISMF 3-isopropylmalate dehydratase large subunit OS=Listeria
monocytogenes serotype 4b (strain F2365) GN=leuC PE=3
SV=1
Length = 462
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 17/73 (23%)
Query: 40 AHVYLRLHKGQTIDDISEGV-------------LEDCAQLVKANSIQGNKVNNIDVVYTP 86
A+ Y+ L GQT ++I G LE+ A++VK N ++ NNI + P
Sbjct: 312 AYEYMGLKPGQTAEEIELGYVFIGSCTNARLSDLEEAARIVKGNKVK----NNIRALVVP 367
Query: 87 WANLKKTASMDVG 99
+ + A+ +G
Sbjct: 368 GSRQVRNAAESIG 380
>sp|C1KWT3|LEUC_LISMC 3-isopropylmalate dehydratase large subunit OS=Listeria
monocytogenes serotype 4b (strain CLIP80459) GN=leuC
PE=3 SV=1
Length = 462
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 17/73 (23%)
Query: 40 AHVYLRLHKGQTIDDISEGV-------------LEDCAQLVKANSIQGNKVNNIDVVYTP 86
A+ Y+ L GQT ++I G LE+ A++VK N ++ NNI + P
Sbjct: 312 AYEYMGLKPGQTAEEIELGYVFIGSCTNARLSDLEEAARIVKGNKVK----NNIRALVVP 367
Query: 87 WANLKKTASMDVG 99
+ + A+ +G
Sbjct: 368 GSRQVRNAAESIG 380
>sp|Q92A26|LEUC_LISIN 3-isopropylmalate dehydratase large subunit OS=Listeria innocua
serovar 6a (strain CLIP 11262) GN=leuC PE=3 SV=1
Length = 462
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 17/73 (23%)
Query: 40 AHVYLRLHKGQTIDDISEGV-------------LEDCAQLVKANSIQGNKVNNIDVVYTP 86
A+ Y+ L GQT ++I G LE+ A++VK N ++ NNI + P
Sbjct: 312 AYEYMGLKPGQTAEEIELGYVFIGSCTNARLSDLEEAARIVKGNKVK----NNIRALVVP 367
Query: 87 WANLKKTASMDVG 99
+ + A+ +G
Sbjct: 368 GSRQVRNAAEAIG 380
>sp|B8CWW2|PLSX_HALOH Phosphate acyltransferase OS=Halothermothrix orenii (strain H 168
/ OCM 544 / DSM 9562) GN=plsX PE=3 SV=1
Length = 334
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 9 IFMGLDKYENEELIKYGFPED 29
I G++K+ N EL KY FPED
Sbjct: 34 IITGIEKHLNRELNKYNFPED 54
>sp|Q8Y5R7|LEUC_LISMO 3-isopropylmalate dehydratase large subunit OS=Listeria
monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
GN=leuC PE=3 SV=1
Length = 462
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 17/73 (23%)
Query: 40 AHVYLRLHKGQTIDDISEGV-------------LEDCAQLVKANSIQGNKVNNIDVVYTP 86
A+ Y+ L GQT + I G LE+ A++VK N ++ NNI + P
Sbjct: 312 AYEYMGLKPGQTAEQIELGYVFIGSCTNARLSDLEEAARIVKGNKVK----NNIRALVVP 367
Query: 87 WANLKKTASMDVG 99
+ + A+ +G
Sbjct: 368 GSRQVRNAAESIG 380
>sp|Q95KJ2|TRM5_MACFA tRNA (guanine(37)-N1)-methyltransferase OS=Macaca fascicularis
GN=TRMT5 PE=2 SV=1
Length = 509
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 21/93 (22%)
Query: 2 PEAGDYTIFMGLDKYENEELIKYGFPE--DIWFHVDKMSS-AHVYLRLHK-------GQT 51
P+ Y + + + +++EE+++ PE D+ ++ AH+ LR H+ GQ
Sbjct: 166 PQISKYNLELTYENFKSEEILRAVLPEGQDVTSGFSRVGHIAHLNLRDHQLPFKQLIGQV 225
Query: 52 IDDISEGVLEDCAQLVKANSIQGNKVNNIDVVY 84
+ D + G+ NK+NNID +Y
Sbjct: 226 MIDKNPGITSAV-----------NKINNIDNMY 247
>sp|F7GSQ4|TRM5_MACMU tRNA (guanine(37)-N1)-methyltransferase OS=Macaca mulatta GN=TRMT5
PE=3 SV=1
Length = 509
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 21/93 (22%)
Query: 2 PEAGDYTIFMGLDKYENEELIKYGFPE--DIWFHVDKMSS-AHVYLRLHK-------GQT 51
P+ Y + + + +++EE+++ PE D+ ++ AH+ LR H+ GQ
Sbjct: 166 PQISKYNLELTYENFKSEEILRAVLPEGQDVTSGFSRVGHIAHLNLRDHQLPFKQLIGQV 225
Query: 52 IDDISEGVLEDCAQLVKANSIQGNKVNNIDVVY 84
+ D + G+ NK+NNID +Y
Sbjct: 226 MIDKNPGITSAV-----------NKINNIDNMY 247
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,662,032
Number of Sequences: 539616
Number of extensions: 1575004
Number of successful extensions: 3497
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3482
Number of HSP's gapped (non-prelim): 28
length of query: 108
length of database: 191,569,459
effective HSP length: 76
effective length of query: 32
effective length of database: 150,558,643
effective search space: 4817876576
effective search space used: 4817876576
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)