Query 039507
Match_columns 108
No_of_seqs 101 out of 986
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 17:49:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039507.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039507hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o71_B Peptide of deleted in c 49.2 7.3 0.00025 19.3 1.1 13 24-36 8-20 (27)
2 3gz2_P Invasin IPAB, 62 kDa an 30.8 36 0.0012 20.3 2.4 23 39-67 18-40 (78)
3 3tqk_A Phospho-2-dehydro-3-deo 28.9 1.6E+02 0.0055 22.8 6.4 48 31-84 217-264 (346)
4 1dv8_A Asialoglycoprotein rece 28.3 61 0.0021 19.7 3.4 39 6-44 33-71 (128)
5 2yhf_A C-type lectin domain fa 27.6 44 0.0015 20.2 2.6 32 6-37 34-65 (118)
6 3rs1_A C-type lectin domain fa 27.4 65 0.0022 19.5 3.4 33 6-38 40-72 (122)
7 3g8k_A Lectin-related NK cell 24.0 64 0.0022 19.7 2.9 32 6-37 39-70 (130)
8 3hup_A Early activation antige 23.9 55 0.0019 20.2 2.6 31 7-37 49-79 (130)
9 1u9d_A Hypothetical protein VC 22.0 9.1 0.00031 25.4 -1.6 55 28-90 7-61 (122)
10 3ff7_C Killer cell lectin-like 21.9 69 0.0024 19.1 2.7 33 7-40 34-66 (112)
11 1hfo_A Migration inhibitory fa 20.1 55 0.0019 20.1 1.9 32 10-41 64-105 (113)
No 1
>3o71_B Peptide of deleted in colorectal cancer; protein-peptide complex, kinase, DCC, transferase-protein BI complex; 1.95A {Rattus norvegicus}
Probab=49.23 E-value=7.3 Score=19.28 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=10.2
Q ss_pred hcCCCceEEeecC
Q 039507 24 YGFPEDIWFHVDK 36 (108)
Q Consensus 24 ~~~~~D~w~H~~~ 36 (108)
-.+|-|+|.|-+.
T Consensus 8 Dlkppdlwihhe~ 20 (27)
T 3o71_B 8 DLRPPDLWIHHEE 20 (27)
T ss_pred CCCCcceeeehhh
Confidence 4688999999754
No 2
>3gz2_P Invasin IPAB, 62 kDa antigen; tetratricopeptide repeat, TPR, chaperone, chaperone binding virulence, secreted, transmembrane; 2.65A {Shigella flexneri}
Probab=30.81 E-value=36 Score=20.29 Aligned_cols=23 Identities=9% Similarity=0.335 Sum_probs=16.9
Q ss_pred ccEEEEEcCCCCCCCCCCHHHHHHHHHHH
Q 039507 39 SAHVYLRLHKGQTIDDISEGVLEDCAQLV 67 (108)
Q Consensus 39 G~hviir~~~~~~~~~~~~~~l~~AA~la 67 (108)
|+|+|+... ++.+.+|+.|-.-|
T Consensus 18 gshmiltst------elgdntiqaandaa 40 (78)
T 3gz2_P 18 GSHMILTST------ELGDNTIQAANDAA 40 (78)
T ss_pred CceEEEeee------ccCccHHHHHHHHh
Confidence 899999875 77788886554433
No 3
>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A {Francisella tularensis}
Probab=28.91 E-value=1.6e+02 Score=22.82 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=31.6
Q ss_pred EEeecCCCccEEEEEcCCCCCCCCCCHHHHHHHHHHHHhhccccCCccceEEEE
Q 039507 31 WFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVY 84 (108)
Q Consensus 31 w~H~~~~pG~hviir~~~~~~~~~~~~~~l~~AA~laa~ySkk~~~~~~v~V~y 84 (108)
.+++.+=|-.|+|+|+.... .+.+.+.+..|+..... +.-...+=||.
T Consensus 217 iv~T~GN~~~HvILRGg~~g--pNY~~~~v~~a~~~l~k----~~l~~~imVDc 264 (346)
T 3tqk_A 217 IFATKGNQNGHVILRGGASG--PNFSKEHVDDCIAKLKK----ADINTKVMIDC 264 (346)
T ss_dssp EEECCCCSCEEEEECCCTTC--CCCSHHHHHHHHHHHHH----TTCCCCEEEES
T ss_pred EEECCCCCCEEEEecCCCCC--CCCCHHHHHHHHHHHHh----CCCCCeEEEec
Confidence 46677888899999976431 16788888888765542 32334555553
No 4
>1dv8_A Asialoglycoprotein receptor 1; C-type lectin CRD, signaling protein; 2.30A {Homo sapiens} SCOP: d.169.1.1
Probab=28.27 E-value=61 Score=19.66 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=29.6
Q ss_pred CeEEEEeCChHHHHHHHHhcCCCceEEeecCCCccEEEE
Q 039507 6 DYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYL 44 (108)
Q Consensus 6 g~~i~vGrn~~eNe~L~k~~~~~D~w~H~~~~pG~hvii 44 (108)
|..+..=.++.||+.|..++....+|+=+.+..|....+
T Consensus 33 g~~La~i~s~~e~~~l~~~~~~~~~WIGl~~~~~~~~W~ 71 (128)
T 1dv8_A 33 DAHLVVVTSWEEQKFVQHHIGPVNTWMGLHDQNGPWKWV 71 (128)
T ss_dssp TCEECCCCSHHHHHHHHHHHCSSCEEEEEECTTSSCEET
T ss_pred CCEEcccCCHHHHHHHHHhhCCCCEEeeEEcCCCcEEeC
Confidence 334555578999999988888889999998876665553
No 5
>2yhf_A C-type lectin domain family 5 member A; immune system; 1.90A {Homo sapiens}
Probab=27.61 E-value=44 Score=20.17 Aligned_cols=32 Identities=9% Similarity=-0.128 Sum_probs=24.6
Q ss_pred CeEEEEeCChHHHHHHHHhcCCCceEEeecCC
Q 039507 6 DYTIFMGLDKYENEELIKYGFPEDIWFHVDKM 37 (108)
Q Consensus 6 g~~i~vGrn~~eNe~L~k~~~~~D~w~H~~~~ 37 (108)
|..+..=.|+.||+.|.+++....+|+=+.+.
T Consensus 34 g~~La~i~s~~e~~~l~~~~~~~~~WIGl~~~ 65 (118)
T 2yhf_A 34 GSTLAIVNTPEKLKFLQDITDAEKYFIGLIYH 65 (118)
T ss_dssp TCEECCCCSHHHHHHHHHHHCSSCEEEEEEEE
T ss_pred CCEEEEeCCHHHHHHHHHhhCCCcEEEecccc
Confidence 34455568999999998788888999988643
No 6
>3rs1_A C-type lectin domain family 2 member I; C-type lectin-like, ligand of NK receptor, natural killer CE receptors, surface of activated T lymphocytes; 1.94A {Mus musculus}
Probab=27.35 E-value=65 Score=19.52 Aligned_cols=33 Identities=15% Similarity=0.057 Sum_probs=25.8
Q ss_pred CeEEEEeCChHHHHHHHHhcCCCceEEeecCCC
Q 039507 6 DYTIFMGLDKYENEELIKYGFPEDIWFHVDKMS 38 (108)
Q Consensus 6 g~~i~vGrn~~eNe~L~k~~~~~D~w~H~~~~p 38 (108)
|..+..=.|+.||+.|..+....++|+=+.+..
T Consensus 40 g~~La~i~s~~e~~~l~~~~~~~~~WIGl~~~~ 72 (122)
T 3rs1_A 40 EAQLARFDNEEELIFLKRFKGDFDSWIGLHRES 72 (122)
T ss_dssp TCEECCCSSHHHHHHHHHHTTTSCEEEEEECSS
T ss_pred CCEEeeeCCHHHHHHHHHhcCCCCEEEEEEecC
Confidence 344555689999999988888889999887663
No 7
>3g8k_A Lectin-related NK cell receptor LY49L1; natural killer cell receptor, immune system; 2.00A {Mus musculus} SCOP: d.169.1.1 PDB: 1qo3_C 3cad_A
Probab=23.97 E-value=64 Score=19.70 Aligned_cols=32 Identities=9% Similarity=0.023 Sum_probs=24.9
Q ss_pred CeEEEEeCChHHHHHHHHhcCCCceEEeecCC
Q 039507 6 DYTIFMGLDKYENEELIKYGFPEDIWFHVDKM 37 (108)
Q Consensus 6 g~~i~vGrn~~eNe~L~k~~~~~D~w~H~~~~ 37 (108)
|..+..=.|+.||+.|.+++....+|+=+.+.
T Consensus 39 g~~La~i~s~~e~~fl~~~~~~~~~WIGl~~~ 70 (130)
T 3g8k_A 39 SLSLLKIDNEDELKFLKLLVPSDSYWIGLSYD 70 (130)
T ss_dssp TCEECCCCSHHHHHHHHHHSCSSEEEEEEEEE
T ss_pred CCeEcccCCHHHHHHHHHhcCCCCEEEeeecc
Confidence 34455558999999998888888999987654
No 8
>3hup_A Early activation antigen CD69; C-type lectin-like domain, disulfide bond, glycoprotein, LEC membrane, phosphoprotein, signal-anchor, transmembrane; 1.37A {Homo sapiens} SCOP: d.169.1.1 PDB: 1e87_A 1e8i_A 3cck_A
Probab=23.89 E-value=55 Score=20.16 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=24.1
Q ss_pred eEEEEeCChHHHHHHHHhcCCCceEEeecCC
Q 039507 7 YTIFMGLDKYENEELIKYGFPEDIWFHVDKM 37 (108)
Q Consensus 7 ~~i~vGrn~~eNe~L~k~~~~~D~w~H~~~~ 37 (108)
..+..=.|+.||+.|.+++...++|+=+.+.
T Consensus 49 ~~La~i~s~~e~~~l~~~~~~~~~WIGl~~~ 79 (130)
T 3hup_A 49 ATLAVIDSEKDMNFLKRYAGREEHWVGLKKE 79 (130)
T ss_dssp CEECCCCSHHHHHHHHHHHTTSCEEEEEEEC
T ss_pred CEEeecCCHHHHHHHHHhhCCCCEEEEEEeC
Confidence 3444558999999998888788999987764
No 9
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=21.95 E-value=9.1 Score=25.42 Aligned_cols=55 Identities=15% Similarity=0.333 Sum_probs=31.8
Q ss_pred CceEEeecCCCccEEEEEcCCCCCCCCCCHHHHHHHHHHHHhhccccCCccceEEEEEecCce
Q 039507 28 EDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYTPWANL 90 (108)
Q Consensus 28 ~D~w~H~~~~pG~hviir~~~~~~~~~~~~~~l~~AA~laa~ySkk~~~~~~v~V~yt~~k~V 90 (108)
+.+||....+| |+.+|+-+.+.+.+++++.+.+-|.|+.. ..+.+.+.|-+.-++
T Consensus 7 ~~~~~~~~~MP--hlr~rgi~~e~v~~lS~~Lid~La~i~~~------~~e~fTle~i~s~~i 61 (122)
T 1u9d_A 7 ENLYFSSNAMP--HLRFRAVEAHIVESLVPTLLNELSSLLST------ARNAFTFELINTQYF 61 (122)
T ss_dssp TTTTBTTCCCC--EEEEESSCHHHHHHHHHHHHHHHHHHHTC------CGGGCEEEECCCCCC
T ss_pred ceeeeccCCCc--eEEECCCCHHHHHHHhHHHHHHHHHHHCC------CcccEEEEEeeeEEE
Confidence 45777776666 99999754332234555556666666542 233456665554444
No 10
>3ff7_C Killer cell lectin-like receptor subfamily G member 1; KLRG1-cadherin complex, calcium, cell adhesion, cell junction, cell membrane; 1.80A {Homo sapiens} SCOP: d.169.1.0
Probab=21.92 E-value=69 Score=19.12 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=25.1
Q ss_pred eEEEEeCChHHHHHHHHhcCCCceEEeecCCCcc
Q 039507 7 YTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSA 40 (108)
Q Consensus 7 ~~i~vGrn~~eNe~L~k~~~~~D~w~H~~~~pG~ 40 (108)
..+..=.|..||+.|..++....+|+-+.+ .|.
T Consensus 34 ~~La~i~s~~e~~~l~~~~~~~~~WiGl~~-~~~ 66 (112)
T 3ff7_C 34 SHLLVITDNQEMSLLQVFLSEAFSWIGLRN-NSG 66 (112)
T ss_dssp CEECCCCSHHHHHHHHTTCCSSCEEEEEEE-SSS
T ss_pred CeEeeECCHHHHHHHHHhccCCCEEEeeec-CCc
Confidence 344555899999999888888889998876 344
No 11
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=20.09 E-value=55 Score=20.07 Aligned_cols=32 Identities=13% Similarity=0.217 Sum_probs=22.5
Q ss_pred EEeCChHHHHHHH-Hhc---------CCCceEEeecCCCccE
Q 039507 10 FMGLDKYENEELI-KYG---------FPEDIWFHVDKMSSAH 41 (108)
Q Consensus 10 ~vGrn~~eNe~L~-k~~---------~~~D~w~H~~~~pG~h 41 (108)
+-||+.++|..|. .+. .+++++....+.|..+
T Consensus 64 ~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~~~~ 105 (113)
T 1hfo_A 64 IGGIEPSRNRDHSAKLFDHLNTKLGIPKNRMYIHFVNLNGDD 105 (113)
T ss_dssp SSSCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGGG
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEECCHHH
Confidence 3479999999883 221 5678888888777654
Done!