Query 039507
Match_columns 108
No_of_seqs 101 out of 986
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 17:49:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039507.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039507hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1n8fa_ c.1.10.4 (A:) 3-deoxy- 58.4 24 0.0018 25.6 7.9 48 32-86 214-261 (343)
2 d2akja1 d.58.36.1 (A:346-430) 54.0 14 0.00099 21.1 4.9 55 32-91 11-70 (85)
3 d1xsza2 d.129.9.1 (A:198-354) 50.3 5.3 0.00039 25.7 2.7 17 56-72 104-120 (157)
4 d1of8a_ c.1.10.4 (A:) 3-deoxy- 47.1 27 0.002 25.4 6.5 46 32-85 214-259 (346)
5 d1dv8a_ d.169.1.1 (A:) H1 subu 38.7 15 0.0011 21.1 3.4 39 5-44 33-71 (128)
6 d2v4jb2 d.58.36.2 (B:2-135) Di 27.7 40 0.0029 21.1 4.2 59 29-91 49-111 (134)
7 d1mwwa_ d.80.1.4 (A:) Hypothet 27.6 14 0.001 21.9 1.9 35 10-44 67-111 (120)
8 d1js3a_ c.67.1.6 (A:) DOPA dec 26.6 9.2 0.00067 28.4 0.9 22 19-40 255-276 (476)
9 d1e87a_ d.169.1.1 (A:) CD69 {H 25.2 36 0.0026 19.2 3.4 31 9-39 38-68 (117)
10 d2ifaa1 d.90.1.1 (A:2-200) Hyp 22.1 34 0.0025 21.2 3.1 36 54-89 21-56 (199)
11 d2gkea2 d.21.1.1 (A:131-274) D 21.9 77 0.0056 19.5 4.8 37 26-68 14-50 (144)
12 d1mjca_ b.40.4.5 (A:) Major co 21.5 18 0.0013 19.8 1.3 13 27-39 26-38 (69)
13 d1wk1a_ d.169.1.1 (A:) Hypothe 20.5 36 0.0026 20.4 2.8 37 8-44 33-70 (150)
14 d2bh1x1 d.52.10.1 (X:14-81) Ge 20.1 49 0.0036 17.8 3.1 41 22-69 6-47 (68)
No 1
>d1n8fa_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Escherichia coli, phenylalanine-regulated isozyme [TaxId: 562]}
Probab=58.39 E-value=24 Score=25.58 Aligned_cols=48 Identities=10% Similarity=0.147 Sum_probs=34.5
Q ss_pred EeecCCCccEEEEEcCCCCCCCCCCHHHHHHHHHHHHhhccccCCccceEEEEEe
Q 039507 32 FHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYTP 86 (108)
Q Consensus 32 ~H~~~~pG~hviir~~~~~~~~~~~~~~l~~AA~laa~ySkk~~~~~~v~V~yt~ 86 (108)
+++.+=|-+|+|||+.... +.+.+.+..|..+... +.-...+=||...
T Consensus 214 v~T~GN~~~HiILRGG~~P---NY~~~~V~~a~~~L~~----~~l~~~imVDcSH 261 (343)
T d1n8fa_ 214 VNTSGNGDCHIILRGGKEP---NYSAKHVAEVKEGLNK----AGLPAQVMIDFSH 261 (343)
T ss_dssp EEECCCSCEEEEECCSSSC---CCSHHHHHHHHHHHHH----TTCCCCEEEECSG
T ss_pred eeccCCCceeEEEEcCCCC---CCCHHHHHHHHHHHHH----CCCCHHHhhhccC
Confidence 7888889999999986442 7889999998876653 3334456565443
No 2
>d2akja1 d.58.36.1 (A:346-430) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=53.95 E-value=14 Score=21.08 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=37.7
Q ss_pred EeecCCCcc-EEEEEcCCCCCCCCCCHHHHHHHHHHHHhhccccC----CccceEEEEEecCcee
Q 039507 32 FHVDKMSSA-HVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGN----KVNNIDVVYTPWANLK 91 (108)
Q Consensus 32 ~H~~~~pG~-hviir~~~~~~~~~~~~~~l~~AA~laa~ySkk~~----~~~~v~V~yt~~k~V~ 91 (108)
+|.+.-+|- .|-|+.+.| .++.+.+...|.||-.|+ .+. ....+.+.....++|-
T Consensus 11 v~~Qk~~g~~~vri~~p~G----~lt~~ql~~la~ia~~yg-~g~irlTtrQni~l~~i~~~~l~ 70 (85)
T d2akja1 11 VHPQKQQGLSFVGLHIPVG----RLQADEMEELARIADVYG-SGELRLTVEQNIIIPNVENSKID 70 (85)
T ss_dssp EEECSSTTEEEEEECCGGG----EECHHHHHHHHHHHHHHS-SSEEEEETTTEEEEEEEETTTHH
T ss_pred EeecCCCCeEEEEEEcCCc----EeCHHHHHHHHHHHHHHC-CCcEEECCCCcEEECCCCHHHHH
Confidence 567666775 455665544 699999999999999998 332 3455655566555543
No 3
>d1xsza2 d.129.9.1 (A:198-354) RalF, C-terminal domain {Legionella pneumophila [TaxId: 446]}
Probab=50.29 E-value=5.3 Score=25.67 Aligned_cols=17 Identities=12% Similarity=0.048 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHhhcc
Q 039507 56 SEGVLEDCAQLVKANSI 72 (108)
Q Consensus 56 ~~~~l~~AA~laa~ySk 72 (108)
+++.|..||++||.|+-
T Consensus 104 seqSl~LAaqiaA~Fet 120 (157)
T d1xsza2 104 TKESIDLAAKAAADFSS 120 (157)
T ss_dssp STTHHHHHHHHHHTSSS
T ss_pred chhhHHHHHHHhccccc
Confidence 78999999999999993
No 4
>d1of8a_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Baker's yeast (Saccharomyces cerevisiae), tyrosine-regulated isozyme [TaxId: 4932]}
Probab=47.12 E-value=27 Score=25.36 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=31.0
Q ss_pred EeecCCCccEEEEEcCCCCCCCCCCHHHHHHHHHHHHhhccccCCccceEEEEE
Q 039507 32 FHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYT 85 (108)
Q Consensus 32 ~H~~~~pG~hviir~~~~~~~~~~~~~~l~~AA~laa~ySkk~~~~~~v~V~yt 85 (108)
+++.+=|-+|+|||+.... .+.+.+.+..|..+. . ++ ...+=||..
T Consensus 214 v~T~GN~~~HiILRGG~~g--pNyd~~~v~~a~~~l---~-~~--~~~imIDcS 259 (346)
T d1of8a_ 214 TTTKGNEHCFVILRGGKKG--TNYDAKSVAEAKAQL---P-AG--SNGLMIDYS 259 (346)
T ss_dssp EEECCCSCEEEEECCCTTC--CCCSHHHHHHHHHHC---C-TT--CCCEEEESS
T ss_pred EEeCCCCcceEEEEccCCC--CCcCHHHHHHHHHHh---h-hc--CCceEEecc
Confidence 8888999999999987432 267788887776543 2 22 245655543
No 5
>d1dv8a_ d.169.1.1 (A:) H1 subunit of the asialoglycoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.67 E-value=15 Score=21.11 Aligned_cols=39 Identities=8% Similarity=0.091 Sum_probs=30.0
Q ss_pred CCeEEEEeCChHHHHHHHHhcCCCceEEeecCCCccEEEE
Q 039507 5 GDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYL 44 (108)
Q Consensus 5 ~g~~i~vGrn~~eNe~L~k~~~~~D~w~H~~~~pG~hvii 44 (108)
.|. +..=.|..+|+.|..++...++|+-+.+..|.-..+
T Consensus 33 g~~-La~i~~~~e~~~i~~~~~~~~~WiG~~~~~~~~~W~ 71 (128)
T d1dv8a_ 33 DAH-LVVVTSWEEQKFVQHHIGPVNTWMGLHDQNGPWKWV 71 (128)
T ss_dssp TCE-ECCCCSHHHHHHHHHHHCSSCEEEEEECTTSSCEET
T ss_pred CCE-EeeecccchhhhhhccccceeeeeeccccCCceEEe
Confidence 344 444489999999988888999999888877765553
No 6
>d2v4jb2 d.58.36.2 (B:2-135) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]}
Probab=27.67 E-value=40 Score=21.08 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=37.5
Q ss_pred ceEEeecCCCccEEEEEcCCCCCCCCCCHHHHHHHHHHHHhhccccC----CccceEEEEEecCcee
Q 039507 29 DIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGN----KVNNIDVVYTPWANLK 91 (108)
Q Consensus 29 D~w~H~~~~pG~hviir~~~~~~~~~~~~~~l~~AA~laa~ySkk~~----~~~~v~V~yt~~k~V~ 91 (108)
-++.|+.+-.---.-+|....- -++.+.|+.-|.||-.|+ .+. ..+.+++.++...+|.
T Consensus 49 Gvl~hv~esGd~~~tVRv~~~R---llS~~~lR~iadIAdkYg-~G~lrfTtRqnIEf~~v~~~~v~ 111 (134)
T d2v4jb2 49 GVLMHVAESGDKVYTVRVGAAR---LMSITHIREMCDIADKYC-GGHLRFTTRNNVEFMVADEASLK 111 (134)
T ss_dssp TEEEEEETTSCEEEEEEECCCS---EEEHHHHHHHHHHHHHHS-TTEEEECTTSCEEEEESSHHHHH
T ss_pred cEEEEecCCCCEEEEEECCCCc---ccCHHHHHHHHHHHHHHC-CCceeecCCCceeEecCCHHHHH
Confidence 4566665543334455654221 258899999999999999 443 3456666666655553
No 7
>d1mwwa_ d.80.1.4 (A:) Hypothetical protein HI1388.1 {Haemophilus influenzae [TaxId: 727]}
Probab=27.60 E-value=14 Score=21.93 Aligned_cols=35 Identities=14% Similarity=0.079 Sum_probs=25.3
Q ss_pred EEeCChHHHHHHHH-hc---------CCCceEEeecCCCccEEEE
Q 039507 10 FMGLDKYENEELIK-YG---------FPEDIWFHVDKMSSAHVYL 44 (108)
Q Consensus 10 ~vGrn~~eNe~L~k-~~---------~~~D~w~H~~~~pG~hvii 44 (108)
+-||+.+++..|.+ +. .++|++++..+.|..+.=+
T Consensus 67 ~~grs~eqK~~l~~~lt~~l~~~lgi~~~~v~I~i~e~~~~~W~~ 111 (120)
T d1mwwa_ 67 MAGRMEGTKKRLIKMLFSELEYKLGIRAHDVEITIKEQPAHCWGF 111 (120)
T ss_dssp ETTCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEECGGGEEE
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEECCHHHeEE
Confidence 34899999998832 21 6688999888888765533
No 8
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=26.56 E-value=9.2 Score=28.36 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=16.5
Q ss_pred HHHHHhcCCCceEEeecCCCcc
Q 039507 19 EELIKYGFPEDIWFHVDKMSSA 40 (108)
Q Consensus 19 e~L~k~~~~~D~w~H~~~~pG~ 40 (108)
+.|-++++..++|||++..=|.
T Consensus 255 ~~I~~i~~~~~~wlHVDAA~Gg 276 (476)
T d1js3a_ 255 LEVGPICHEEDIWLHVDAAYAG 276 (476)
T ss_dssp HHHHHHHHHTTCEEEEECTTGG
T ss_pred HHHHHHHHhcCcEEEEecccch
Confidence 4456778889999999865443
No 9
>d1e87a_ d.169.1.1 (A:) CD69 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.25 E-value=36 Score=19.18 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=24.1
Q ss_pred EEEeCChHHHHHHHHhcCCCceEEeecCCCc
Q 039507 9 IFMGLDKYENEELIKYGFPEDIWFHVDKMSS 39 (108)
Q Consensus 9 i~vGrn~~eNe~L~k~~~~~D~w~H~~~~pG 39 (108)
+..=.|+.+++.|..+....++|+=+.+.++
T Consensus 38 L~~i~s~~e~~~l~~~~~~~~~WiGl~~~~~ 68 (117)
T d1e87a_ 38 LAVIDSEKDMNFLKRYAGREEHWVGLKKEPG 68 (117)
T ss_dssp ECCCCSHHHHHHHHHHHCSSCEEEEEECCTT
T ss_pred EeeecCHHHHHHHhhhhccceeecccccccc
Confidence 4444899999999878888899998876544
No 10
>d2ifaa1 d.90.1.1 (A:2-200) Hypothetical protein Smu.260 {Streptococcus mutans [TaxId: 1309]}
Probab=22.07 E-value=34 Score=21.22 Aligned_cols=36 Identities=11% Similarity=-0.037 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHHHhhccccCCccceEEEEEecCc
Q 039507 54 DISEGVLEDCAQLVKANSIQGNKVNNIDVVYTPWAN 89 (108)
Q Consensus 54 ~~~~~~l~~AA~laa~ySkk~~~~~~v~V~yt~~k~ 89 (108)
++|+++|++.-..|.++++.+.+..-+.+.....+.
T Consensus 21 pV~~e~l~~il~~A~r~APS~~N~Qpwrfvvv~~~~ 56 (199)
T d2ifaa1 21 DLSKAELVALIQNAIKQAPSAFNSQTSRALVLFGQD 56 (199)
T ss_dssp SSCHHHHHHHHHHHHHTSCCGGGCCCEEEEEEEHHH
T ss_pred CCCHHHHHHHHHHHHhhCCCcCCCcceEEEEEECHH
Confidence 589999999888888877656567778777765443
No 11
>d2gkea2 d.21.1.1 (A:131-274) Diaminopimelate epimerase {Haemophilus influenzae [TaxId: 727]}
Probab=21.93 E-value=77 Score=19.48 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=24.8
Q ss_pred CCCceEEeecCCCccEEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q 039507 26 FPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVK 68 (108)
Q Consensus 26 ~~~D~w~H~~~~pG~hviir~~~~~~~~~~~~~~l~~AA~laa 68 (108)
..+.+++++-+++-||.|+... +++.-.+..-+...-
T Consensus 14 ~~~~~~~~~V~vGNPH~Vi~v~------~l~~~~~~~~g~~i~ 50 (144)
T d2gkea2 14 DIQTVLCGAVSMGNPHCVVQVD------DIQTANVEQLGPLLE 50 (144)
T ss_dssp SSCEEEEEEEESSSEEEEEECS------CTTTSCHHHHHHHHH
T ss_pred CCeEEEEEEEECCCCeEEEEEC------CcccCchhHhcceec
Confidence 3456889988999999999864 444444444444443
No 12
>d1mjca_ b.40.4.5 (A:) Major cold shock protein {Escherichia coli [TaxId: 562]}
Probab=21.51 E-value=18 Score=19.81 Aligned_cols=13 Identities=15% Similarity=0.588 Sum_probs=10.6
Q ss_pred CCceEEeecCCCc
Q 039507 27 PEDIWFHVDKMSS 39 (108)
Q Consensus 27 ~~D~w~H~~~~pG 39 (108)
..|+|||...+++
T Consensus 26 ~~diFvH~s~l~~ 38 (69)
T d1mjca_ 26 SKDVFVHFSAIQN 38 (69)
T ss_dssp CCCEEEEGGGBCC
T ss_pred CccEEEEhHHhcc
Confidence 5799999988764
No 13
>d1wk1a_ d.169.1.1 (A:) Hypothetical protein F28B4.3 {Caenorhabditis elegans [TaxId: 6239]}
Probab=20.54 E-value=36 Score=20.35 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=26.3
Q ss_pred EEEEeCChHHHHHHHHhcCCCceEEeecC-CCccEEEE
Q 039507 8 TIFMGLDKYENEELIKYGFPEDIWFHVDK-MSSAHVYL 44 (108)
Q Consensus 8 ~i~vGrn~~eNe~L~k~~~~~D~w~H~~~-~pG~hvii 44 (108)
.+..=+|+.+|+.|..+....++|+-+.+ ..|.-..+
T Consensus 33 ~La~i~~~~e~~fi~~~~~~~~~WiGl~~~~~g~w~W~ 70 (150)
T d1wk1a_ 33 YLADDLGDDKNNFYSSIAANTQFWIGLFKNSDGQFYWD 70 (150)
T ss_dssp EECCCCSHHHHHHHHHHTTTCEEEEEEEECSSSCEEEC
T ss_pred EEeeeCCHHHHHHhhhcccccceeEeeeeccccccccc
Confidence 34445899999999888888999987643 34444443
No 14
>d2bh1x1 d.52.10.1 (X:14-81) General secretion pathway protein E, EpsE {Vibrio cholerae [TaxId: 666]}
Probab=20.10 E-value=49 Score=17.77 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=29.0
Q ss_pred HHhcCCCceEEeecCCC-ccEEEEEcCCCCCCCCCCHHHHHHHHHHHHh
Q 039507 22 IKYGFPEDIWFHVDKMS-SAHVYLRLHKGQTIDDISEGVLEDCAQLVKA 69 (108)
Q Consensus 22 ~k~~~~~D~w~H~~~~p-G~hviir~~~~~~~~~~~~~~l~~AA~laa~ 69 (108)
+-+|+.+.+.+...+-. |++++.+. +.+.+.|.++-+++..
T Consensus 6 fsFAr~~gVll~~~~~~~~~~l~~~~-------~~~~~al~E~rR~~g~ 47 (68)
T d2bh1x1 6 FSFANRFKLVLDWNEDFSQASIYYLA-------PLSMEALVETKRVVKH 47 (68)
T ss_dssp HHHHHHHTEEEEECSSSCCEEEEECS-------SCCHHHHHHHHHHHCS
T ss_pred HHHHhhCCEEEEecCCCCcEEEEECC-------CCCHHHHHHHHHHcCC
Confidence 56777888877654433 45666564 6889999999888763
Done!