BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039511
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HJ3|A Chain A, Structure Of The Arabidopsis Thaliana Erv1 Thiol Oxidase
pdb|2HJ3|B Chain B, Structure Of The Arabidopsis Thaliana Erv1 Thiol Oxidase
Length = 125
Score = 228 bits (581), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 101/117 (86%), Positives = 110/117 (94%)
Query: 77 SAPVTKDELGRATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVL 136
+ PVTK++LGRATWTFLHTLAAQYPE PTRQQKKDVKELM ILSRMYPC+ECADHFKE+L
Sbjct: 5 TGPVTKEDLGRATWTFLHTLAAQYPEKPTRQQKKDVKELMTILSRMYPCRECADHFKEIL 64
Query: 137 RANPVQAGSHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLECEQRACDLQGT 193
R+NP QAGS +EFSQWLCHVHN VNRSLGKLVFPCERVDARWGKLECEQ++CDL GT
Sbjct: 65 RSNPAQAGSQEEFSQWLCHVHNTVNRSLGKLVFPCERVDARWGKLECEQKSCDLHGT 121
>pdb|3R7C|A Chain A, The Structure Of A Hexahestidine-Tagged Form Of Augmenter
Of Liver Regeneration Reveals A Novel Cd(2)cl(4)o(6)
Cluster That Aids In Crystal Packing
pdb|3R7C|B Chain B, The Structure Of A Hexahestidine-Tagged Form Of Augmenter
Of Liver Regeneration Reveals A Novel Cd(2)cl(4)o(6)
Cluster That Aids In Crystal Packing
pdb|3R7C|C Chain C, The Structure Of A Hexahestidine-Tagged Form Of Augmenter
Of Liver Regeneration Reveals A Novel Cd(2)cl(4)o(6)
Cluster That Aids In Crystal Packing
pdb|3R7C|D Chain D, The Structure Of A Hexahestidine-Tagged Form Of Augmenter
Of Liver Regeneration Reveals A Novel Cd(2)cl(4)o(6)
Cluster That Aids In Crystal Packing
Length = 139
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 67/100 (67%)
Query: 79 PVTKDELGRATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLRA 138
P ++ELGR TW FLHTLAA YP+ PT +Q++D+ + + I S+ YPC+ECA+ ++ +
Sbjct: 30 PQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRIDR 89
Query: 139 NPVQAGSHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 178
+ + FSQWLC +HN VNR LGK F C RVD RW
Sbjct: 90 SQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERW 129
>pdb|1OQC|A Chain A, The Crystal Structure Of Augmenter Of Liver Regeneration:
A Mammalian Fad Dependent Sulfhydryl Oxidase
pdb|1OQC|B Chain B, The Crystal Structure Of Augmenter Of Liver Regeneration:
A Mammalian Fad Dependent Sulfhydryl Oxidase
pdb|1OQC|C Chain C, The Crystal Structure Of Augmenter Of Liver Regeneration:
A Mammalian Fad Dependent Sulfhydryl Oxidase
pdb|1OQC|D Chain D, The Crystal Structure Of Augmenter Of Liver Regeneration:
A Mammalian Fad Dependent Sulfhydryl Oxidase
Length = 125
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 67/100 (67%)
Query: 79 PVTKDELGRATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLRA 138
P ++ELGR TW FLHTLAA YP+ PT +Q++D+ + + I S+ YPC+ECA+ ++ +
Sbjct: 16 PQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRIDR 75
Query: 139 NPVQAGSHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 178
+ + FSQWLC +HN VNR LGK F C RVD RW
Sbjct: 76 SQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERW 115
>pdb|3MBG|A Chain A, Crystal Structure Of Human Augmenter Of Liver Regeneration
(Alr)
pdb|3MBG|B Chain B, Crystal Structure Of Human Augmenter Of Liver Regeneration
(Alr)
pdb|3MBG|C Chain C, Crystal Structure Of Human Augmenter Of Liver Regeneration
(Alr)
Length = 139
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 67/100 (67%)
Query: 79 PVTKDELGRATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLRA 138
P ++ELGR +W LHTLAA YP+ PT +Q++D+ + + + S+ YPC+ECA+ ++ L
Sbjct: 30 PPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEECAEDLRKRLAR 89
Query: 139 NPVQAGSHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 178
N + F+QWLCH+HN VNR LGK F C +VD RW
Sbjct: 90 NHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERW 129
>pdb|3O55|A Chain A, Crystal Structure Of Human Fad-Linked Augmenter Of Liver
Regeneration (Alr)
Length = 125
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 67/100 (67%)
Query: 79 PVTKDELGRATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLRA 138
P ++ELGR +W LHTLAA YP+ PT +Q++D+ + + + S+ YPC+ECA+ ++ L
Sbjct: 16 PPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEECAEDLRKRLAR 75
Query: 139 NPVQAGSHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 178
N + F+QWLCH+HN VNR LGK F C +VD RW
Sbjct: 76 NHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERW 115
>pdb|3TK0|A Chain A, Mutation Of Sfalr
Length = 126
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 66/100 (66%)
Query: 79 PVTKDELGRATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLRA 138
P ++ELGR +W LHTLAA YP+ PT +Q++D+ + + + S+ YP +ECA+ ++ L
Sbjct: 17 PPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPSEECAEDLRKRLAR 76
Query: 139 NPVQAGSHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 178
N + F+QWLCH+HN VNR LGK F C +VD RW
Sbjct: 77 NHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERW 116
>pdb|3U2L|A Chain A, Crystal Structure Of Human Alr Mutant C142s
Length = 115
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 66/100 (66%)
Query: 79 PVTKDELGRATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLRA 138
P ++ELGR +W LHTLAA YP+ PT +Q++D+ + + + S+ YP +ECA+ ++ L
Sbjct: 6 PPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPSEECAEDLRKRLAR 65
Query: 139 NPVQAGSHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 178
N + F+QWLCH+HN VNR LGK F C +VD RW
Sbjct: 66 NHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERW 105
>pdb|3U2M|A Chain A, Crystal Structure Of Human Alr Mutant C142145S
Length = 115
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 65/100 (65%)
Query: 79 PVTKDELGRATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLRA 138
P ++ELGR +W LHTLAA YP+ PT +Q++D+ + + + S+ YP +E A+ ++ L
Sbjct: 6 PPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPSEESAEDLRKRLAR 65
Query: 139 NPVQAGSHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 178
N + F+QWLCH+HN VNR LGK F C +VD RW
Sbjct: 66 NHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERW 105
>pdb|4E0H|A Chain A, Crystal Structure Of Fad Binding Domain Of Erv1 From
Saccharomyces Cerevisiae
Length = 106
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 61/96 (63%)
Query: 83 DELGRATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLRANPVQ 142
++LGR++WT LH++AA YP PT QQK ++K+ + I S +YPC CA F++ +R N Q
Sbjct: 5 EQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNWCAKDFEKYIRENAPQ 64
Query: 143 AGSHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 178
S +E +W+C HN VN+ L K F C + RW
Sbjct: 65 VESREELGRWMCEAHNKVNKKLRKPKFDCNFWEKRW 100
>pdb|4E0I|A Chain A, Crystal Structure Of The C30s/c133s Mutant Of Erv1 From
Saccharomyces Cerevisiae
pdb|4E0I|B Chain B, Crystal Structure Of The C30s/c133s Mutant Of Erv1 From
Saccharomyces Cerevisiae
pdb|4E0I|C Chain C, Crystal Structure Of The C30s/c133s Mutant Of Erv1 From
Saccharomyces Cerevisiae
Length = 189
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 61/100 (61%)
Query: 79 PVTKDELGRATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLRA 138
P ++LGR++WT LH++AA YP PT QQK ++K+ + I S +YPC A F++ +R
Sbjct: 84 PPDVEQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNWSAKDFEKYIRE 143
Query: 139 NPVQAGSHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 178
N Q S +E +W+C HN VN+ L K F C + RW
Sbjct: 144 NAPQVESREELGRWMCEAHNKVNKKLRKPKFDCNFWEKRW 183
>pdb|3U5S|A Chain A, Selenium Substituted Human Augmenter Of Liver Regeneration
Length = 126
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 62/100 (62%)
Query: 79 PVTKDELGRATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLRA 138
P ++ELGR +W LHTLAA YP+ PT +Q++D + + + S+ YP +E A+ ++ L
Sbjct: 17 PPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDXAQFIHLFSKFYPXEEXAEDLRKRLAR 76
Query: 139 NPVQAGSHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 178
N + F+QWL H+HN VNR LGK F +VD RW
Sbjct: 77 NHPDTRTRAAFTQWLXHLHNEVNRKLGKPDFDXSKVDERW 116
>pdb|1JR8|A Chain A, Crystal Structure Of Erv2p
pdb|1JR8|B Chain B, Crystal Structure Of Erv2p
pdb|1JRA|A Chain A, Crystal Structure Of Erv2p
pdb|1JRA|B Chain B, Crystal Structure Of Erv2p
pdb|1JRA|C Chain C, Crystal Structure Of Erv2p
pdb|1JRA|D Chain D, Crystal Structure Of Erv2p
Length = 117
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 58/94 (61%)
Query: 81 TKDELGRATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLRANP 140
K E+GRA+W + HTL A++P+ PT ++++ + + + + +YPC EC+ HF +++ P
Sbjct: 7 VKKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEKYP 66
Query: 141 VQAGSHDEFSQWLCHVHNVVNRSLGKLVFPCERV 174
VQ S + W CH+HN VN L K ++ C +
Sbjct: 67 VQTSSRTAAAMWGCHIHNKVNEYLKKDIYDCATI 100
>pdb|3GWN|A Chain A, Crystal Structure Of The Fad Binding Domain From Mimivirus
Sulfhydryl Oxidase R596
pdb|3GWN|B Chain B, Crystal Structure Of The Fad Binding Domain From Mimivirus
Sulfhydryl Oxidase R596
Length = 114
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 86 GRATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLR------AN 139
G A WTF H + YP NPT K+ K L + PC+ C + +K+ + N
Sbjct: 10 GTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTGKTALTN 69
Query: 140 PVQAGSHDEFSQWLCHVHNVVNRSL 164
V H ++W VHN VN L
Sbjct: 70 EVLRNRH-TLTKWFYDVHNAVNNKL 93
>pdb|3TD7|A Chain A, Crysal Structure Of The Mimivirus Sulfhydryl Oxidase R596
Length = 295
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 86 GRATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLR------AN 139
G A WTF H + YP NPT K+ K L + PC+ C + +K+ + N
Sbjct: 44 GTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTGKTALTN 103
Query: 140 PVQAGSHDEFSQWLCHVHNVVNRSL 164
V H ++W VHN VN L
Sbjct: 104 EVLRNRH-TLTKWFYDVHNAVNNKL 127
>pdb|3GWL|A Chain A, Crystal Structure Of Asfv Pb119l, A Viral Sulfhydryl
Oxidase
pdb|3GWL|B Chain B, Crystal Structure Of Asfv Pb119l, A Viral Sulfhydryl
Oxidase
Length = 106
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%)
Query: 86 GRATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLRANPVQAGS 145
G W LH A + + P+ ++K + + + PC C H L NP+ +
Sbjct: 8 GPKYWRSLHLYAIFFSDAPSWKEKYEAIQWILNFIESLPCTRCQHHAFSYLTKNPLTLNN 67
Query: 146 HDEFSQWLCHVHNVVNRSLGKLV 168
++F W HN VN L K +
Sbjct: 68 SEDFQYWTFAFHNNVNNRLNKKI 90
>pdb|3LLI|A Chain A, Sulfhydryl Oxidase Fragment Of Human Qsox1
pdb|3LLK|A Chain A, Sulfhydryl Oxidase Fragment Of Human Qsox1
pdb|3LLK|B Chain B, Sulfhydryl Oxidase Fragment Of Human Qsox1
pdb|3LLK|C Chain C, Sulfhydryl Oxidase Fragment Of Human Qsox1
Length = 261
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 88 ATWTFLHTLAAQYPENPT--RQQKKDVKELM----AILSRMYPCKECADHFKEVLRANPV 141
+ W H L Q Q+ KE++ + + C++CA HF+++ A+
Sbjct: 121 SLWVLFHFLTVQAARQNVDHSQEAAKAKEVLPAIRGYVHYFFGCRDCASHFEQMAAASMH 180
Query: 142 QAGSHDEFSQWLCHVHNVVNRSLG 165
+ GS + WL HN VN L
Sbjct: 181 RVGSPNAAVLWLWSSHNRVNARLA 204
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 90 WTFLHTLAAQ-------YPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLRANPVQ 142
W H L Q +P+ P Q+ ++ + + + + C++ ADHF+++ A+ Q
Sbjct: 380 WVLFHFLTVQANRYSEAHPQEPADGQEV-LQAMRSYVQFFFGCRDSADHFEQMAAASMHQ 438
Query: 143 AGSHDEFSQWLCHVHNVVNRSL 164
S WL HN VN L
Sbjct: 439 VRSPSNAILWLWTSHNRVNARL 460
>pdb|3QCP|A Chain A, Qsox From Trypanosoma Brucei
Length = 470
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 88 ATWTFLHTLAAQYPENPTRQQKKDVKELMAILSR-MYPCKECADHF 132
W LH L P + ++V E++ R + CKEC DHF
Sbjct: 303 GMWLLLHALTVNTPAD------RNVLEVIQNYIRYFFSCKECRDHF 342
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
Length = 720
Score = 28.9 bits (63), Expect = 1.8, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 142 QAGSHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLECEQRACDLQGTPDL 196
+ GS D FS W V++ + + G L+F R A LE ++ L P++
Sbjct: 216 EDGSIDRFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEI 270
>pdb|2V1R|A Chain A, Yeast Pex13 Sh3 Domain Complexed With A Peptide From Pex14
At 2.1 A Resolution
pdb|2V1R|B Chain B, Yeast Pex13 Sh3 Domain Complexed With A Peptide From Pex14
At 2.1 A Resolution
Length = 80
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 77 SAPV--TKDELGRATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFK 133
S P+ +K E RA + F+ PENP + +LMAILS+ P +D +K
Sbjct: 6 SEPIDPSKLEFARALYDFV-------PENPEMEVALKKGDLMAILSKKDPLGRDSDWWK 57
>pdb|1JQQ|A Chain A, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|B Chain B, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|C Chain C, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|D Chain D, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1N5Z|A Chain A, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
pdb|1N5Z|B Chain B, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
Length = 92
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 77 SAPV--TKDELGRATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFK 133
S P+ +K E RA + F+ PENP + +LMAILS+ P +D +K
Sbjct: 6 SEPIDPSKLEFARALYDFV-------PENPEMEVALKKGDLMAILSKKDPLGRDSDWWK 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,931,824
Number of Sequences: 62578
Number of extensions: 219952
Number of successful extensions: 351
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 330
Number of HSP's gapped (non-prelim): 22
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)