Query 039511
Match_columns 198
No_of_seqs 115 out of 534
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 10:24:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039511.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039511hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3355 Mitochondrial sulfhydr 100.0 4.2E-45 9.1E-50 302.0 10.7 173 9-190 3-177 (177)
2 COG5054 ERV1 Mitochondrial sul 100.0 4.4E-36 9.6E-41 248.1 9.6 107 76-182 73-179 (181)
3 PF04777 Evr1_Alr: Erv1 / Alr 100.0 1.5E-32 3.3E-37 205.5 8.1 93 87-179 1-94 (95)
4 KOG1731 FAD-dependent sulfhydr 99.7 4E-18 8.8E-23 162.3 7.4 92 74-165 394-490 (606)
5 PHA03005 sulfhydryl oxidase; P 98.8 9.3E-09 2E-13 78.4 6.8 77 81-160 2-79 (96)
6 PF04805 Pox_E10: E10-like pro 94.6 0.1 2.2E-06 38.1 5.3 50 111-160 4-54 (70)
7 PF14424 Toxin-deaminase: The 32.9 16 0.00034 29.4 0.2 49 88-141 76-124 (133)
8 PF11571 Med27: Mediator compl 29.3 89 0.0019 23.2 3.7 25 108-132 38-64 (90)
9 KOG4167 Predicted DNA-binding 25.1 39 0.00084 34.9 1.4 19 121-139 791-809 (907)
10 KOG3354 Gluconate kinase [Carb 24.8 57 0.0012 28.0 2.2 48 134-184 54-104 (191)
11 PF05214 Baculo_p33: Baculovir 23.7 77 0.0017 28.5 2.9 49 87-135 106-164 (250)
No 1
>KOG3355 consensus Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-45 Score=301.96 Aligned_cols=173 Identities=38% Similarity=0.711 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccCCCCCC--CCCCCCCeeeecCCCCCCCCCCCCCCCchhHhhhhccCCCCCCccccc
Q 039511 9 ALFVNFQKVTNCIQTHLSNFIDRRSSSSSS--QPANGKPLLFLSPSINKQNNPSSSNADPAAHQILRKETSAPVTKDELG 86 (198)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~sk~~lG 86 (198)
.+++ +++-.+|.++++|.+|.+....... -+.+..-.+-+. .++-.....+..-| ..--..||++++++|
T Consensus 3 i~~d-~gk~~~~~~~~~sl~~~~~i~~~~~~~~V~~~~~~~~~~--~~~~~~~~~~~~~P-----~~~~~~~~~~~eeLG 74 (177)
T KOG3355|consen 3 IILD-MGKPRRICRICLSLLIFSKITRKSGSSMVQNDKSNFMLE--SKSLTTGEGQTRKP-----ISSRKGDPPDKEELG 74 (177)
T ss_pred cccc-cccchHHHHHhHHHHHHHHHhccccchhccchHhhcccc--cccccCccccccCC-----chhhcCCCchHHHHh
Confidence 4566 7788899999999988765542222 222322211111 11111111111111 222389999999999
Q ss_pred cchhHHHHHhhhcCCCCCCHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhHHHHhhhCC
Q 039511 87 RATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLRANPVQAGSHDEFSQWLCHVHNVVNRSLGK 166 (198)
Q Consensus 87 ralW~LLHTlAa~yPd~PT~~qk~~~~~fI~sf~~fyPC~~Cr~hF~~~l~~~P~~vsSR~~l~lWLw~~HN~VN~rLgK 166 (198)
|++|+|||||||+||+.||.+|+.+|+.||.+|+++|||.+|++||+++++++||+|+||++|.+|+|++||.||++|||
T Consensus 75 RstWtllHT~aA~yP~~PT~eqk~~~~sFi~~~s~~yPC~eCa~dl~K~l~~nppq~~SRe~~~~W~C~vHN~VNekLgK 154 (177)
T KOG3355|consen 75 RSTWTLLHTLAANYPDRPTPEQKDDMRSFIHLFSKFYPCGECAKDLRKILRKNPPQTSSREAFTQWLCHVHNKVNEKLGK 154 (177)
T ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHhhCcCCCCCCCCCC
Q 039511 167 LVFPCERVDARWGKLECEQRACDL 190 (198)
Q Consensus 167 p~f~c~~v~eRw~~~~~~~~~~~~ 190 (198)
|.|+|+.|+|||+.|+.+ |+||.
T Consensus 155 p~fdC~~v~erw~~g~~~-~~~d~ 177 (177)
T KOG3355|consen 155 PKFDCRTVDERWRDGWKD-GSCDR 177 (177)
T ss_pred CCCchhHHHHHHhchhhh-cCCCC
Confidence 999999999999999555 99984
No 2
>COG5054 ERV1 Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-36 Score=248.06 Aligned_cols=107 Identities=40% Similarity=0.797 Sum_probs=103.0
Q ss_pred CCCCCCccccccchhHHHHHhhhcCCCCCCHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 039511 76 TSAPVTKDELGRATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLRANPVQAGSHDEFSQWLCH 155 (198)
Q Consensus 76 ~~cp~sk~~lGralW~LLHTlAa~yPd~PT~~qk~~~~~fI~sf~~fyPC~~Cr~hF~~~l~~~P~~vsSR~~l~lWLw~ 155 (198)
...+++++++||++|+|||||+|+||..||.+|+.+++.||.+|+.+|||.+|+.||+++++.+||+|+||+++..|+|+
T Consensus 73 k~d~~~~~elGRssWtllHtv~A~yP~~PT~~qr~~l~sFl~~~s~~yPCgeCs~~f~K~l~~~ppqv~SRea~~~W~Ce 152 (181)
T COG5054 73 KHDNPDVEELGRSSWTLLHTVAANYPARPTPQQRDDLRSFLFLFSITYPCGECSKHFQKLLDVYPPQVSSREAATTWACE 152 (181)
T ss_pred ccCchHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhheeecHHHHHHHHHHHhhCCCCcccHHHHHHHHHH
Confidence 56678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhhhCCCCCChhhHHHhhCcCC
Q 039511 156 VHNVVNRSLGKLVFPCERVDARWGKLE 182 (198)
Q Consensus 156 ~HN~VN~rLgKp~f~c~~v~eRw~~~~ 182 (198)
+||.||++||||.|||..+.|||--|+
T Consensus 153 vHN~VNekL~Kp~~dC~~~~e~~~~G~ 179 (181)
T COG5054 153 VHNKVNEKLGKPKFDCDTWNERYDCGC 179 (181)
T ss_pred HHHHHHHHhCCCCcccchhHHHhhccC
Confidence 999999999999999999999986543
No 3
>PF04777 Evr1_Alr: Erv1 / Alr family; InterPro: IPR006863 Biogenesis of Fe/S clusters involves a number of essential mitochondrial proteins. Erv1p of Saccharomyces cerevisiae (Baker's yeast) mitochondria is required for the maturation of Fe/S proteins in the cytosol. The ALR (augmenter of liver regeneration) represents a mammalian ortholog of yeast Erv1p. Both Erv1p and full-length ALR are located in the mitochondrial intermembrane and it is thought to operate downstream of the mitochondrial ABC transporter [].; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process; PDB: 3MBG_C 3U2L_A 3U2M_A 3QD9_D 3QCP_A 3O55_A 2HJ3_B 3GWN_A 3T58_D 3T59_B ....
Probab=99.97 E-value=1.5e-32 Score=205.54 Aligned_cols=93 Identities=39% Similarity=0.828 Sum_probs=90.1
Q ss_pred cchhHHHHHhhhcCCCCCCHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhHHHHhhhCC
Q 039511 87 RATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLRANPVQAGSHDEFSQWLCHVHNVVNRSLGK 166 (198)
Q Consensus 87 ralW~LLHTlAa~yPd~PT~~qk~~~~~fI~sf~~fyPC~~Cr~hF~~~l~~~P~~vsSR~~l~lWLw~~HN~VN~rLgK 166 (198)
+|+|+|||++|++||+.|+..+++.+..|+..|..||||.+|+.||.++++++|++++||+++++|||++||.||+||||
T Consensus 1 c~~W~llH~~a~~~p~~p~~~~~~~~~~~~~~~~~~~pC~~C~~hf~~~~~~~~~~v~sr~~l~~Wl~~~HN~VN~rL~k 80 (95)
T PF04777_consen 1 CGLWTLLHTLAAYYPENPTEEEKQVMEAFFRSFPHFFPCEECRNHFSKYIKKNPPQVSSREDLVLWLWRAHNKVNERLGK 80 (95)
T ss_dssp HHHHHHHHHHHHTSHSSHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHSGGGGSSHHHHHHHHHHHHHHHHHHTTT
T ss_pred CchHHHHHHHHhcCccCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-ChhhHHHhhC
Q 039511 167 LVF-PCERVDARWG 179 (198)
Q Consensus 167 p~f-~c~~v~eRw~ 179 (198)
|.+ ++..+.++|.
T Consensus 81 ~~~~~~~~~~~~~~ 94 (95)
T PF04777_consen 81 PIFCDDPKFKEQWP 94 (95)
T ss_dssp STTTSGTTHHHHHT
T ss_pred CCCCCcHHHHhHcC
Confidence 997 8889999996
No 4
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=4e-18 Score=162.33 Aligned_cols=92 Identities=18% Similarity=0.411 Sum_probs=75.4
Q ss_pred ccCCCCCCcccccc---chhHHHHHhhhcCCCCCCHHhHHHHHHHHHHHh-hccCChhHHHHHHHHHHhC-CCCCCCHHH
Q 039511 74 KETSAPVTKDELGR---ATWTFLHTLAAQYPENPTRQQKKDVKELMAILS-RMYPCKECADHFKEVLRAN-PVQAGSHDE 148 (198)
Q Consensus 74 ~~~~cp~sk~~lGr---alW~LLHTlAa~yPd~PT~~qk~~~~~fI~sf~-~fyPC~~Cr~hF~~~l~~~-P~~vsSR~~ 148 (198)
.+.+|-+|++.+++ |+|+|||++++..-.+....+-..+..-+..|. .||.|.+|+.||.+|..+. +..|.++++
T Consensus 394 ~w~gC~GS~P~~RGftCgLWTLFH~lTV~Aa~~~~~~~~~~~l~~l~~~vk~FFgC~dC~~HF~~Ma~~~~~~~V~~ped 473 (606)
T KOG1731|consen 394 TWVGCAGSKPHLRGFTCGLWTLFHALTVEAAKQEVHFAFTPILDVLHGFVKNFFGCTDCREHFQKMATRRKLHRVRRPED 473 (606)
T ss_pred eeEeecCCCCccCCcchHHHHHHHHhhhhhcccccccchhccchhhHHHHHHccCchHHHHHHHHHHHhhcccccCChhh
Confidence 34999999999997 999999999998654433344344445444444 6999999999999998864 578999999
Q ss_pred HHHHHHHHhHHHHhhhC
Q 039511 149 FSQWLCHVHNVVNRSLG 165 (198)
Q Consensus 149 l~lWLw~~HN~VN~rLg 165 (198)
.++|||.+||+||+||.
T Consensus 474 ~vLWLW~aHN~VN~RLa 490 (606)
T KOG1731|consen 474 VVLWLWSAHNEVNARLA 490 (606)
T ss_pred hhhHHHHHhhHHHHHhc
Confidence 99999999999999996
No 5
>PHA03005 sulfhydryl oxidase; Provisional
Probab=98.84 E-value=9.3e-09 Score=78.41 Aligned_cols=77 Identities=18% Similarity=0.385 Sum_probs=61.7
Q ss_pred CccccccchhHHHHHhhhcCCCCCCHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHH-HHhHH
Q 039511 81 TKDELGRATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLRANPVQAGSHDEFSQWLC-HVHNV 159 (198)
Q Consensus 81 sk~~lGralW~LLHTlAa~yPd~PT~~qk~~~~~fI~sf~~fyPC~~Cr~hF~~~l~~~P~~vsSR~~l~lWLw-~~HN~ 159 (198)
++..||||.|+.+|.++.+|+..++- +..+..+.++...+||.+|+.|..+.+.++-..-++.-..+.+.. .++|.
T Consensus 2 dPk~WGra~W~vIFivi~k~~~~~~i---E~cK~~lytI~~tLPC~~Cr~HA~~ai~knnimSs~diNyi~~FfI~l~Nn 78 (96)
T PHA03005 2 NPKYWGRAIWTVIFIVISKAKLDGNI---EACKRKLYTICSTLPCPACRRHAKEAIEKNNIMSSNDLNYIYFFFISLFNN 78 (96)
T ss_pred CcchhhhhHHHHHHHHHHhccCCCcH---HHHHHHHHHhhhcCCCHHHHHHHHHHHhhcCccccCCccchhHHHHHHHHH
Confidence 67899999999999999999987644 557778889999999999999999999987765444445554444 66665
Q ss_pred H
Q 039511 160 V 160 (198)
Q Consensus 160 V 160 (198)
.
T Consensus 79 l 79 (96)
T PHA03005 79 L 79 (96)
T ss_pred h
Confidence 4
No 6
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=94.64 E-value=0.1 Score=38.09 Aligned_cols=50 Identities=20% Similarity=0.428 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHH-HHhHHH
Q 039511 111 DVKELMAILSRMYPCKECADHFKEVLRANPVQAGSHDEFSQWLC-HVHNVV 160 (198)
Q Consensus 111 ~~~~fI~sf~~fyPC~~Cr~hF~~~l~~~P~~vsSR~~l~lWLw-~~HN~V 160 (198)
..+.-+..+...+||..||.|..+.+.++-..-++--..+.++. .++|..
T Consensus 4 ~cKr~ly~I~~tLPC~~Cr~HA~~ai~kNNiMSs~DiNyIy~FFI~lfNnl 54 (70)
T PF04805_consen 4 KCKRKLYTICSTLPCPECRIHAKEAIQKNNIMSSNDINYIYFFFISLFNNL 54 (70)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCccccCCccchHHHHHHHHHHh
Confidence 44566777889999999999999999988766444445554444 666643
No 7
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=32.88 E-value=16 Score=29.35 Aligned_cols=49 Identities=16% Similarity=0.505 Sum_probs=35.1
Q ss_pred chhHHHHHhhhcCCCCCCHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhCCC
Q 039511 88 ATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLRANPV 141 (198)
Q Consensus 88 alW~LLHTlAa~yPd~PT~~qk~~~~~fI~sf~~fyPC~~Cr~hF~~~l~~~P~ 141 (198)
+==++|..+|..+..++.... .=|..|.+.-||..|..-+.++.+++|-
T Consensus 76 sE~KiL~~ia~~l~~~~~~~~-----G~i~l~te~~pC~SC~~vi~qF~~~~pn 124 (133)
T PF14424_consen 76 SEYKILEDIAKKLGDNPDPSG-----GTIDLFTELPPCESCSNVIEQFKKDFPN 124 (133)
T ss_pred HHHHHHHHHHHHhccccccCC-----ceEEEEecCCcChhHHHHHHHHHHHCCC
Confidence 555777777777765544321 2244567889999999999999998874
No 8
>PF11571 Med27: Mediator complex subunit 27; InterPro: IPR021627 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Mediator exists in two major forms in human cells: a smaller form that interacts strongly with pol II and activates transcription, and a large form that does not interact strongly with pol II and does not directly activate transcription. The ubiquitous expression of Med27 mRNA suggests a universal requirement for Med27 in transcriptional initiation. Loss of Crsp34/Med27 decreases amacrine cell number, but increases the number of rod photoreceptor cells [].
Probab=29.29 E-value=89 Score=23.17 Aligned_cols=25 Identities=16% Similarity=0.573 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHhhc--cCChhHHHHH
Q 039511 108 QKKDVKELMAILSRM--YPCKECADHF 132 (198)
Q Consensus 108 qk~~~~~fI~sf~~f--yPC~~Cr~hF 132 (198)
.-..+..||.++..+ =||..|.++.
T Consensus 38 ~l~~ll~~l~sY~~lfs~pC~~C~klL 64 (90)
T PF11571_consen 38 DLRSLLDWLSSYRNLFSTPCKKCGKLL 64 (90)
T ss_pred HHHHHHHHHHHHhhhccchhhHHHhHh
Confidence 445677788887754 5999999988
No 9
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=25.07 E-value=39 Score=34.91 Aligned_cols=19 Identities=32% Similarity=0.901 Sum_probs=16.0
Q ss_pred hccCChhHHHHHHHHHHhC
Q 039511 121 RMYPCKECADHFKEVLRAN 139 (198)
Q Consensus 121 ~fyPC~~Cr~hF~~~l~~~ 139 (198)
-||||++|.+.|.++-.++
T Consensus 791 giFpCreC~kvF~KiKSrN 809 (907)
T KOG4167|consen 791 GIFPCRECGKVFFKIKSRN 809 (907)
T ss_pred ceeehHHHHHHHHHHhhhh
Confidence 3899999999999886554
No 10
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=24.80 E-value=57 Score=28.02 Aligned_cols=48 Identities=13% Similarity=0.352 Sum_probs=33.5
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHhHHHHhhhCCCC---CChhhHHHhhCcCCCC
Q 039511 134 EVLRANPVQAGSHDEFSQWLCHVHNVVNRSLGKLV---FPCERVDARWGKLECE 184 (198)
Q Consensus 134 ~~l~~~P~~vsSR~~l~lWLw~~HN~VN~rLgKp~---f~c~~v~eRw~~~~~~ 184 (198)
+|-+-.|.. -+|=.-||+.+|+..-++|.+-+ ..|+.+.++||.--|+
T Consensus 54 KM~~GipLn---D~DR~pWL~~i~~~~~~~l~~~q~vVlACSaLKk~YRdILr~ 104 (191)
T KOG3354|consen 54 KMTQGIPLN---DDDRWPWLKKIAVELRKALASGQGVVLACSALKKKYRDILRH 104 (191)
T ss_pred HHhcCCCCC---cccccHHHHHHHHHHHHHhhcCCeEEEEhHHHHHHHHHHHHh
Confidence 333334544 33446799999999999986543 3899999999764443
No 11
>PF05214 Baculo_p33: Baculovirus P33; InterPro: IPR007879 This family consists of a series of baculoviral 33 kDa early protein homologues.; PDB: 3QZY_B 3P0K_A.
Probab=23.69 E-value=77 Score=28.49 Aligned_cols=49 Identities=24% Similarity=0.359 Sum_probs=29.1
Q ss_pred cchhHHHHHhhhcCC------CCCCH----HhHHHHHHHHHHHhhccCChhHHHHHHHH
Q 039511 87 RATWTFLHTLAAQYP------ENPTR----QQKKDVKELMAILSRMYPCKECADHFKEV 135 (198)
Q Consensus 87 ralW~LLHTlAa~yP------d~PT~----~qk~~~~~fI~sf~~fyPC~~Cr~hF~~~ 135 (198)
+-.|=.+|.++.-.. +.-+- .+-+.++..+.++-..+-|.-||+||...
T Consensus 106 ~tIWD~IH~l~li~DdmV~nR~~~~~d~v~~~l~n~K~lfYNiF~~L~C~mC~~HYl~V 164 (250)
T PF05214_consen 106 TTIWDSIHFLCLIIDDMVDNRHKLSYDFVSNQLKNMKWLFYNIFFKLFCPMCRDHYLTV 164 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHT---SSS-HHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhHhheeCChHHhHHHeee
Confidence 478999999975432 21111 12345666666666678999999999643
Done!