Query 039511
Match_columns 198
No_of_seqs 115 out of 534
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 17:54:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039511.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039511hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hj3_A Sulfhydryl oxidase ERV1 100.0 1.4E-48 4.7E-53 308.0 10.8 121 76-196 4-125 (125)
2 3u5s_A FAD-linked sulfhydryl o 100.0 1E-44 3.5E-49 286.1 13.0 117 72-189 9-126 (126)
3 1jr8_A ERV2 protein, mitochond 100.0 4E-41 1.4E-45 262.6 9.6 108 77-184 3-110 (117)
4 4e0h_A Mitochondrial FAD-linke 100.0 2.2E-40 7.5E-45 253.4 11.8 105 80-184 2-106 (106)
5 4e0i_A Mitochondrial FAD-linke 100.0 1.7E-39 5.9E-44 272.0 11.7 111 74-184 79-189 (189)
6 3gwl_A P14, FAD-linked sulfhyd 100.0 5.2E-39 1.8E-43 246.7 11.1 98 83-180 5-102 (106)
7 3gwn_A Probable FAD-linked sul 100.0 1.5E-38 5.1E-43 246.8 8.2 104 78-181 2-111 (114)
8 3td7_A FAD-linked sulfhydryl o 100.0 2.5E-29 8.6E-34 221.7 9.3 112 76-187 34-151 (295)
9 3t58_A Sulfhydryl oxidase 1; o 99.9 4.5E-26 1.5E-30 213.0 4.0 103 73-175 360-476 (519)
10 3llk_A Sulfhydryl oxidase 1; d 99.9 7.3E-24 2.5E-28 184.9 8.3 98 74-174 104-218 (261)
11 3qcp_A QSOX from trypanosoma b 99.9 1.8E-23 6.1E-28 194.7 4.5 93 74-177 286-387 (470)
12 3p0k_A Sulfhydryl oxidase; 4-h 39.6 32 0.0011 29.8 4.5 49 87-135 108-166 (266)
13 2lvu_A Zinc finger and BTB dom 37.1 10 0.00036 18.8 0.0 14 122-135 2-15 (26)
14 2lvt_A Zinc finger and BTB dom 29.8 16 0.00056 18.4 0.0 14 122-135 2-15 (29)
15 2lvr_A Zinc finger and BTB dom 27.6 19 0.00065 18.1 0.0 14 122-135 3-16 (30)
16 3vow_A Probable DNA DC->DU-edi 21.6 50 0.0017 27.2 2.5 57 122-182 94-161 (190)
17 3v4k_A DNA DC->DU-editing enzy 20.3 48 0.0016 27.6 2.1 60 122-184 108-176 (203)
No 1
>2hj3_A Sulfhydryl oxidase ERV1P; four-helix bundle, flavin adenine dinucleotide, oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana}
Probab=100.00 E-value=1.4e-48 Score=308.04 Aligned_cols=121 Identities=84% Similarity=1.463 Sum_probs=100.4
Q ss_pred CCCCCCccccccchhHHHHHhhhcCCCCCCHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 039511 76 TSAPVTKDELGRATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLRANPVQAGSHDEFSQWLCH 155 (198)
Q Consensus 76 ~~cp~sk~~lGralW~LLHTlAa~yPd~PT~~qk~~~~~fI~sf~~fyPC~~Cr~hF~~~l~~~P~~vsSR~~l~lWLw~ 155 (198)
..||+++++||+++|+||||||++||+.|+.++++++..||+.|.+||||.+||.||.++++++|++|+||+++++|||+
T Consensus 4 ~~~p~~~~~lG~slW~llHtlaa~yp~~pt~~~~~~~~~f~~~~~~fypC~~Ca~hF~~~~~~~p~~v~sr~~~~lWLw~ 83 (125)
T 2hj3_A 4 MTGPVTKEDLGRATWTFLHTLAAQYPEKPTRQQKKDVKELMTILSRMYPCRECADHFKEILRSNPAQAGSQEEFSQWLCH 83 (125)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHHHH
T ss_pred CCCCCCccccCcchhHHHHHHHhhCcCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhhhCCCCCChhhHHHhhCcCCCCCCCCCCCCC-CCC
Q 039511 156 VHNVVNRSLGKLVFPCERVDARWGKLECEQRACDLQGT-PDL 196 (198)
Q Consensus 156 ~HN~VN~rLgKp~f~c~~v~eRw~~~~~~~~~~~~~~~-~~~ 196 (198)
+||.||+|||||+|||+.|+|||+.||||+|+|||+|+ +||
T Consensus 84 ~HN~VN~rL~Kp~f~c~~~~~rw~~g~~d~~~c~~~~~~~~~ 125 (125)
T 2hj3_A 84 VHNTVNRSLGKLVFPCERVDARWGKLECEQKSCDLHGTSMDF 125 (125)
T ss_dssp HHHHHHHHTTCCCCCTTSHHHHCC------------------
T ss_pred HHHHHHHhhCCCCCCHHHHHHHhccCCCCCCCcCCCCCCCCC
Confidence 99999999999999999999999999999999999999 776
No 2
>3u5s_A FAD-linked sulfhydryl oxidase ALR; flavin, liver, oxidoreductase; HET: FAD; 1.50A {Homo sapiens} PDB: 3mbg_A* 3tk0_A* 3o55_A* 3u2m_A* 3u2l_A* 3r7c_A* 1oqc_A*
Probab=100.00 E-value=1e-44 Score=286.08 Aligned_cols=117 Identities=38% Similarity=0.702 Sum_probs=113.0
Q ss_pred hhcc-CCCCCCccccccchhHHHHHhhhcCCCCCCHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhCCCCCCCHHHHH
Q 039511 72 LRKE-TSAPVTKDELGRATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLRANPVQAGSHDEFS 150 (198)
Q Consensus 72 ~~~~-~~cp~sk~~lGralW~LLHTlAa~yPd~PT~~qk~~~~~fI~sf~~fyPC~~Cr~hF~~~l~~~P~~vsSR~~l~ 150 (198)
..+. ..||+++++||+++|+||||||++||++||.+++.+|+.||.+|..+|||.+|+.||.++++++|++++||++|+
T Consensus 9 ~~~~~~~~P~d~~elG~atW~~LHtia~~yP~~Pt~~~k~~~~~fi~~l~~~lPC~~C~~hf~~~l~~~pp~l~SR~~l~ 88 (126)
T 3u5s_A 9 DTKFREDXPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPXEEXAEDLRKRLARNHPDTRTRAAFT 88 (126)
T ss_dssp GTCCCSSSCCCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHH
T ss_pred cccccCCCCCCHHHcCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHCccccCCHHHHH
Confidence 3444 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHhhhCCCCCChhhHHHhhCcCCCCCCCCC
Q 039511 151 QWLCHVHNVVNRSLGKLVFPCERVDARWGKLECEQRACD 189 (198)
Q Consensus 151 lWLw~~HN~VN~rLgKp~f~c~~v~eRw~~~~~~~~~~~ 189 (198)
+|||.+||.||+|||||+|+|+.|.|||+.|+.| ||||
T Consensus 89 ~Wl~~~HN~VN~rLgKp~fd~~~~~ery~~g~~d-g~~d 126 (126)
T 3u5s_A 89 QWLXHLHNEVNRKLGKPDFDXSKVDERWRDGWKD-GSXD 126 (126)
T ss_dssp HHHHHHHHHHHHHTTCCCCCGGGHHHHHTTCCTT-STTC
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHccCCCC-CCCC
Confidence 9999999999999999999999999999999877 9998
No 3
>1jr8_A ERV2 protein, mitochondrial; FAD, sulfhydryl oxidase, helical bundle, CXXC, oxidoreductase; HET: FAD; 1.50A {Saccharomyces cerevisiae} SCOP: a.24.15.1 PDB: 1jra_A*
Probab=100.00 E-value=4e-41 Score=262.58 Aligned_cols=108 Identities=31% Similarity=0.732 Sum_probs=103.4
Q ss_pred CCCCCccccccchhHHHHHhhhcCCCCCCHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 039511 77 SAPVTKDELGRATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLRANPVQAGSHDEFSQWLCHV 156 (198)
Q Consensus 77 ~cp~sk~~lGralW~LLHTlAa~yPd~PT~~qk~~~~~fI~sf~~fyPC~~Cr~hF~~~l~~~P~~vsSR~~l~lWLw~~ 156 (198)
+||+++++||+|+|+||||||++||++|+.+++..+..|+..|.+||||.+||.||.++++++|++|+||+++++|||++
T Consensus 3 ~~~~~~~~lG~s~W~llHtlaa~~p~~pt~~~~~~l~~f~~~~~~fypC~~Ca~hF~~~~~~~p~~v~sr~~~~lWLw~~ 82 (117)
T 1jr8_A 3 GDDKVKKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEKYPVQTSSRTAAAMWGCHI 82 (117)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHH
T ss_pred CCCcchhhccccHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhCCCCCChhhHHHhhCcCCCC
Q 039511 157 HNVVNRSLGKLVFPCERVDARWGKLECE 184 (198)
Q Consensus 157 HN~VN~rLgKp~f~c~~v~eRw~~~~~~ 184 (198)
||.||+|||||+|||+.|+|||+.|+-|
T Consensus 83 HN~VN~rL~kp~f~c~~~~er~~~g~~~ 110 (117)
T 1jr8_A 83 HNKVNEYLKKDIYDCATILEDYDCGCSD 110 (117)
T ss_dssp HHHHHHHTTCCCCCCTTHHHHTCCCC--
T ss_pred HHHHHHHhCCCCcCHHHHHHHHhcCCCC
Confidence 9999999999999999999999987766
No 4
>4e0h_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; four-helix bundle, flavin-linked sulfhydryl oxidase, FAD BIN oxidation; HET: FAD; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-40 Score=253.42 Aligned_cols=105 Identities=41% Similarity=0.836 Sum_probs=101.8
Q ss_pred CCccccccchhHHHHHhhhcCCCCCCHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhHH
Q 039511 80 VTKDELGRATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLRANPVQAGSHDEFSQWLCHVHNV 159 (198)
Q Consensus 80 ~sk~~lGralW~LLHTlAa~yPd~PT~~qk~~~~~fI~sf~~fyPC~~Cr~hF~~~l~~~P~~vsSR~~l~lWLw~~HN~ 159 (198)
.|+++||+++|++|||+|++||++|+.+++..++.||.+|..+|||++||.||.++++++|+.++||++|++|||.+||.
T Consensus 2 ~d~e~lGp~~W~~lHtia~~yP~~pt~~~k~~~~~fi~~l~~~lPC~~C~~hf~~~l~~~p~~~~sr~~l~~Wl~~~HN~ 81 (106)
T 4e0h_A 2 MDVEQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNWCAKDFEKYIRENAPQVESREELGRWMCEAHNK 81 (106)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHHHHH
T ss_pred CCHHHccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHCCCccCCHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCChhhHHHhhCcCCCC
Q 039511 160 VNRSLGKLVFPCERVDARWGKLECE 184 (198)
Q Consensus 160 VN~rLgKp~f~c~~v~eRw~~~~~~ 184 (198)
||+|||||+|+|+.+.+||+.|+.|
T Consensus 82 VN~rLgKp~f~~~~~~~ry~~g~~d 106 (106)
T 4e0h_A 82 VNKKLRKPKFDCNFWEKRWKDGWDE 106 (106)
T ss_dssp HHHHTTCCCCCGGGHHHHHTSCCC-
T ss_pred HHHHcCCCCCCHHHHHHHHHhcCCC
Confidence 9999999999999999999998754
No 5
>4e0i_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; flavin-linked sulfhydryl oxidase, MIA40, oxidation, mitochon intermembrane space; HET: FAD; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-39 Score=271.97 Aligned_cols=111 Identities=39% Similarity=0.761 Sum_probs=107.1
Q ss_pred ccCCCCCCccccccchhHHHHHhhhcCCCCCCHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 039511 74 KETSAPVTKDELGRATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLRANPVQAGSHDEFSQWL 153 (198)
Q Consensus 74 ~~~~cp~sk~~lGralW~LLHTlAa~yPd~PT~~qk~~~~~fI~sf~~fyPC~~Cr~hF~~~l~~~P~~vsSR~~l~lWL 153 (198)
....||+++++||+++|+||||||++||++|+.+++.+++.||.+|..+|||.+|+.||.++++++|+.++||++|++||
T Consensus 79 ~~~~~P~d~~elGp~~W~~LHTiA~~YP~~Pt~~~k~~~~~Fi~~l~~~lPC~~C~~hf~~~lk~~pp~l~SR~~l~~Wl 158 (189)
T 4e0i_A 79 YRKVDPPDVEQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNWSAKDFEKYIRENAPQVESREELGRWM 158 (189)
T ss_dssp CBCCCCCCHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHSCCCCSSHHHHHHHH
T ss_pred CcCCCCCChhhcCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHCccccCCHHHHHHHH
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHhhhCCCCCChhhHHHhhCcCCCC
Q 039511 154 CHVHNVVNRSLGKLVFPCERVDARWGKLECE 184 (198)
Q Consensus 154 w~~HN~VN~rLgKp~f~c~~v~eRw~~~~~~ 184 (198)
|++||.||+|||||+|+|+.+.|||+.||.|
T Consensus 159 ~~~HN~VN~rLgKp~fdc~~~~erw~~G~~d 189 (189)
T 4e0i_A 159 CEAHNKVNKKLRKPKFDCNFWEKRWKDGWDE 189 (189)
T ss_dssp HHHHHHHHHHTTCCCCCGGGHHHHHTSCCC-
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHhcCCC
Confidence 9999999999999999999999999998754
No 6
>3gwl_A P14, FAD-linked sulfhydryl oxidase; homodimer, five-helix bundle, cytoplasm, disulfide bond, flavoprotein, late protein; HET: FAD; 2.10A {African swine fever virus BA71V}
Probab=100.00 E-value=5.2e-39 Score=246.71 Aligned_cols=98 Identities=22% Similarity=0.452 Sum_probs=95.7
Q ss_pred cccccchhHHHHHhhhcCCCCCCHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhHHHHh
Q 039511 83 DELGRATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLRANPVQAGSHDEFSQWLCHVHNVVNR 162 (198)
Q Consensus 83 ~~lGralW~LLHTlAa~yPd~PT~~qk~~~~~fI~sf~~fyPC~~Cr~hF~~~l~~~P~~vsSR~~l~lWLw~~HN~VN~ 162 (198)
.+|||++|+||||||++||++||.+++.+++.||+.|.++|||.+|++||.++++++|+++.+++++++|||++||.||+
T Consensus 5 ~~~Gra~W~llHt~aa~yP~~Pt~~~~~~~~~~i~~f~~~yPC~~Ca~hf~~~~~~~p~~~~s~~~~~lWlc~~HN~VN~ 84 (106)
T 3gwl_A 5 LHWGPKYWRSLHLYAIFFSDAPSWKEKYEAIQWILNFIESLPCTRCQHHAFSYLTKNPLTLNNSEDFQYWTFAFHNNVNN 84 (106)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCccChHHHHHHHHHHHhHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCChhhHHHhhCc
Q 039511 163 SLGKLVFPCERVDARWGK 180 (198)
Q Consensus 163 rLgKp~f~c~~v~eRw~~ 180 (198)
|||||+|||+.|+|||+.
T Consensus 85 rLgKp~fdc~~~~e~y~~ 102 (106)
T 3gwl_A 85 RLNKKIISWSEYKNIYEQ 102 (106)
T ss_dssp HTTCCCCCHHHHHHHHTT
T ss_pred hhCCCCCCHHHHHHHHHH
Confidence 999999999999999986
No 7
>3gwn_A Probable FAD-linked sulfhydryl oxidase R596; five helix bundle, homodimer, disulfide bond, flavoprot oxidoreductase, virion; HET: FAD; 1.78A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=1.5e-38 Score=246.78 Aligned_cols=104 Identities=26% Similarity=0.539 Sum_probs=99.5
Q ss_pred CCCCccccccchhHHHHHhhhcCCCCCCHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhCC----CC-CCCHHHHHHH
Q 039511 78 APVTKDELGRATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLRANP----VQ-AGSHDEFSQW 152 (198)
Q Consensus 78 cp~sk~~lGralW~LLHTlAa~yPd~PT~~qk~~~~~fI~sf~~fyPC~~Cr~hF~~~l~~~P----~~-vsSR~~l~lW 152 (198)
.+.++++|||++|+||||+|++||++||.+++++++.||++|.+||||.+|++||.++++++| ++ |+||+++++|
T Consensus 2 ~g~~p~~~Grs~W~llHt~aa~~p~~pt~~~~~~~~~fi~~~~~~yPC~~Ca~hf~~~~~~~p~~~~~~~v~sr~~~~~W 81 (114)
T 3gwn_A 2 NGLITKIWGTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTGKTALTNEVLRNRHTLTKW 81 (114)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHTTSGGGCCCGGGGSSHHHHHHH
T ss_pred CCCchhhhcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCcCCccccCCHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999 88 9999999999
Q ss_pred HHHHhHHHHhhhCCCC-CChhhHHHhhCcC
Q 039511 153 LCHVHNVVNRSLGKLV-FPCERVDARWGKL 181 (198)
Q Consensus 153 Lw~~HN~VN~rLgKp~-f~c~~v~eRw~~~ 181 (198)
||++||.||+|||||+ ++|+.|.|||+..
T Consensus 82 lc~~HN~VN~rLgKp~~~~~~~v~ery~~~ 111 (114)
T 3gwn_A 82 FYDVHNAVNNKLEVDYGLSYEDVVNKYESF 111 (114)
T ss_dssp HHHHHHHHHHHTTCCCCCCHHHHHHHHHTT
T ss_pred HHHHHhHHHHHhCCCCcCCHHHHHHHHHHH
Confidence 9999999999999997 5789999999874
No 8
>3td7_A FAD-linked sulfhydryl oxidase R596; four helix-bundle, orfan domain, oxidoreductase; HET: FAD; 2.21A {Acanthamoeba polyphaga mimivirus}
Probab=99.96 E-value=2.5e-29 Score=221.66 Aligned_cols=112 Identities=24% Similarity=0.492 Sum_probs=102.5
Q ss_pred CCCCCCccccccchhHHHHHhhhcCCCCCCHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhCCC-----CCCCHHHHH
Q 039511 76 TSAPVTKDELGRATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLRANPV-----QAGSHDEFS 150 (198)
Q Consensus 76 ~~cp~sk~~lGralW~LLHTlAa~yPd~PT~~qk~~~~~fI~sf~~fyPC~~Cr~hF~~~l~~~P~-----~vsSR~~l~ 150 (198)
++.......||+++|++|||+|++||++|+..++.++..||.+|..+|||.+|+.||.++++++|+ .++||++|+
T Consensus 34 s~dGM~TkVWGPstW~fLHTIAa~YPenPT~~dKk~y~~FI~nL~~vLPC~~Cr~HF~k~Lkk~Pv~~~~p~L~SRdsLs 113 (295)
T 3td7_A 34 QHNGLITKIWGTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTGKTALTNEVLRNRHTLT 113 (295)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHTTSGGGCCCTTGGGSHHHHH
T ss_pred CCCCCccCcCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccccccccccCCHHHHH
Confidence 455677789999999999999999999999999999999999999999999999999999998874 478999999
Q ss_pred HHHHHHhHHHHhhhCCCC-CChhhHHHhhCcCCCCCCC
Q 039511 151 QWLCHVHNVVNRSLGKLV-FPCERVDARWGKLECEQRA 187 (198)
Q Consensus 151 lWLw~~HN~VN~rLgKp~-f~c~~v~eRw~~~~~~~~~ 187 (198)
.|+|++||.||++||||. +.++.+.++|....|.|+.
T Consensus 114 kWL~~iHN~VNkrLGKP~~lSYedv~kkYE~yrakC~k 151 (295)
T 3td7_A 114 KWFYDVHNAVNNKLEVDYGLSYEDVVNKYESFRAKCGK 151 (295)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhccCCCC
Confidence 999999999999999996 7889999999988887553
No 9
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=99.92 E-value=4.5e-26 Score=212.99 Aligned_cols=103 Identities=20% Similarity=0.333 Sum_probs=87.9
Q ss_pred hccCCCCCCcccccc---chhHHHHHhhhcCCCCCCH------HhHHHHHHHHHHHhhccCChhHHHHHHHHHHhCCCCC
Q 039511 73 RKETSAPVTKDELGR---ATWTFLHTLAAQYPENPTR------QQKKDVKELMAILSRMYPCKECADHFKEVLRANPVQA 143 (198)
Q Consensus 73 ~~~~~cp~sk~~lGr---alW~LLHTlAa~yPd~PT~------~qk~~~~~fI~sf~~fyPC~~Cr~hF~~~l~~~P~~v 143 (198)
.+|.+|.++++++++ |+|+||||||++||+.|+. .++..+..+...+..||||.+||+||.+++++++++|
T Consensus 360 ~~w~~C~gs~~~~rg~~C~lW~l~Htltv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ff~C~~Ca~hF~~~~~~~~~~v 439 (519)
T 3t58_A 360 VNWVGCQGSEPHFRGFPCSLWVLFHFLTVQANRYSEAHPQEPADGQEVLQAMRSYVQFFFGCRDSADHFEQMAAASMHQV 439 (519)
T ss_dssp CCCSTTBCSSTTSBSHHHHHHHHHHHHHHHHHHHHHTSTTSCCCSCHHHHHHHHHHHHHCSBHHHHHHHHHHHHHHGGGC
T ss_pred CCcccCCCCCcccCCcCcHHHHHHHHHHccCccCCccccccccchHHHHHHHHHHHHHCCCchHHHHHHHHHHhhCCCcC
Confidence 356999999999997 9999999999999987754 3445555555556789999999999999999999999
Q ss_pred CCHHHHHHHHHHHhHHHHhhh-----CCCCCChhhHH
Q 039511 144 GSHDEFSQWLCHVHNVVNRSL-----GKLVFPCERVD 175 (198)
Q Consensus 144 sSR~~l~lWLw~~HN~VN~rL-----gKp~f~c~~v~ 175 (198)
+||+++++|||++||.||+|| ++|.|++..+-
T Consensus 440 ~s~~~~~~Wlw~~HN~VN~rL~~~~~~dp~f~k~q~P 476 (519)
T 3t58_A 440 RSPSNAILWLWTSHNRVNARLSGALSEDPHFPKVQWP 476 (519)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHTTCTTCCTTSCCCSSS
T ss_pred CCHHHHHHHHHHhhCHHHhhcCCCCCCCCCCCccCCC
Confidence 999999999999999999999 56666665443
No 10
>3llk_A Sulfhydryl oxidase 1; disulfide, flavin adenine dinucleotide, alternative splicing, FAD, flavoprotein, glycoprotein, GOLG apparatus, membrane; HET: FAD FLC; 2.00A {Homo sapiens} PDB: 3lli_A*
Probab=99.89 E-value=7.3e-24 Score=184.94 Aligned_cols=98 Identities=21% Similarity=0.426 Sum_probs=80.1
Q ss_pred ccCCCCCCcccccc---chhHHHHHhhhcCCCCCCH--------Hh-HHHHHHHHHHHhhccCChhHHHHHHHHHHhCCC
Q 039511 74 KETSAPVTKDELGR---ATWTFLHTLAAQYPENPTR--------QQ-KKDVKELMAILSRMYPCKECADHFKEVLRANPV 141 (198)
Q Consensus 74 ~~~~cp~sk~~lGr---alW~LLHTlAa~yPd~PT~--------~q-k~~~~~fI~sf~~fyPC~~Cr~hF~~~l~~~P~ 141 (198)
++.+|.+|++++++ |+|+|||+||+++++.|.. .+ ...++.||+ .||||.+|++||.++++++|+
T Consensus 104 ~WvgC~GS~p~~RGy~CgLW~LFH~LTV~a~~~~~~~~~~~~~~~~vl~ai~~fv~---~FypC~~Ca~hF~~~~~~~~~ 180 (261)
T 3llk_A 104 NWIGCQGSEPHFRGFPCSLWVLFHFLTVQAARQNVDHSQEAAKAKEVLPAIRGYVH---YFFGCRDCASHFEQMAAASMH 180 (261)
T ss_dssp CCSTTCCSSTTSSSHHHHHHHHHHHHHHHHHCC---------CGGGHHHHHHHHHH---HHCSCHHHHHHHHHHHHHHGG
T ss_pred cccccCCCCCccCCcCcHHHHHHHHHHhhhhcccccccccccCHHHHHHHHHHHHH---HcCCcHHHHHHHHHHHhhCCC
Confidence 56999999999997 9999999999998776532 11 234455554 569999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhHHHHhhhC-----CCCCChhhH
Q 039511 142 QAGSHDEFSQWLCHVHNVVNRSLG-----KLVFPCERV 174 (198)
Q Consensus 142 ~vsSR~~l~lWLw~~HN~VN~rLg-----Kp~f~c~~v 174 (198)
+++|++++++|||++||.||+||+ .|.||+..+
T Consensus 181 ~v~sr~~~~lWLw~~HN~VN~rLag~~seDP~fpK~qw 218 (261)
T 3llk_A 181 RVGSPNAAVLWLWSSHNRVNARLAGAPSEDPQFPKVQW 218 (261)
T ss_dssp GCCSHHHHHHHHHHHHHHHHHHHTTCTTSCTTSCCCSS
T ss_pred ccCCHHHHHHHHHHhcCHHhhhcCCCCCCCCCCCccCC
Confidence 999999999999999999999993 566666444
No 11
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*
Probab=99.87 E-value=1.8e-23 Score=194.70 Aligned_cols=93 Identities=20% Similarity=0.399 Sum_probs=79.9
Q ss_pred ccCCCCCCcccccc---chhHHHHHhhhcCCCCCCHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhCCCCCCCHHHHH
Q 039511 74 KETSAPVTKDELGR---ATWTFLHTLAAQYPENPTRQQKKDVKELMAILSRMYPCKECADHFKEVLRANPVQAGSHDEFS 150 (198)
Q Consensus 74 ~~~~cp~sk~~lGr---alW~LLHTlAa~yPd~PT~~qk~~~~~fI~sf~~fyPC~~Cr~hF~~~l~~~P~~vsSR~~l~ 150 (198)
+|.+|.++++++++ |+|+||||||++||+ ++..+..|...+.+||||.+|+.||.+++ ++|+++++
T Consensus 286 ~w~~C~gs~~~~rg~~CslW~l~Htlt~~~~~-----~~~~~~~~~~~~~~ffpC~~Ca~hF~~~~------~~s~~~~~ 354 (470)
T 3qcp_A 286 RWRTCRGSSPQYRGFPCGMWLLLHALTVNTPA-----DRNVLEVIQNYIRYFFSCKECRDHFIQFN------FSPNEDPV 354 (470)
T ss_dssp CCSTTCCSSTTSSSHHHHHHHHHHHHHHHCCT-----TCCHHHHHHHHHHHHCSCHHHHHHHTTCC------CCSSSCHH
T ss_pred cccccCCCCCccCCcCchHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHccCcHHHHHHHHHHh------ccCHHHHH
Confidence 57999999999997 999999999999998 23445566666678999999999999876 78999999
Q ss_pred HHHHHHhHHHHhhhCC------CCCChhhHHHh
Q 039511 151 QWLCHVHNVVNRSLGK------LVFPCERVDAR 177 (198)
Q Consensus 151 lWLw~~HN~VN~rLgK------p~f~c~~v~eR 177 (198)
+|||++||.||+||+| |.|||..+.-.
T Consensus 355 lWlw~~HN~VN~rL~~~~~~~dp~fpk~~~P~~ 387 (470)
T 3qcp_A 355 LQLWRAHNNVNARLANVKDGADPLVPKRQFPTL 387 (470)
T ss_dssp HHHHHHHHHHHHHHTTCCTTSCTTSCCCCSSCT
T ss_pred HHHHHHhCHHHHhcCCCCCCCCCCCCccCCCCc
Confidence 9999999999999997 77888665443
No 12
>3p0k_A Sulfhydryl oxidase; 4-helix bundle, 5-helix bundle, flavin adenine dinucleotide, oxidoreductase, viral protein; HET: FAD; 1.47A {Autographa californica nucleopolyhedro} PDB: 3qzy_A* 3ust_A*
Probab=39.56 E-value=32 Score=29.83 Aligned_cols=49 Identities=24% Similarity=0.457 Sum_probs=32.2
Q ss_pred cchhHHHHHhhhcC------CCCCCHH----hHHHHHHHHHHHhhccCChhHHHHHHHH
Q 039511 87 RATWTFLHTLAAQY------PENPTRQ----QKKDVKELMAILSRMYPCKECADHFKEV 135 (198)
Q Consensus 87 ralW~LLHTlAa~y------Pd~PT~~----qk~~~~~fI~sf~~fyPC~~Cr~hF~~~ 135 (198)
+-.|=.+|.++.-. .+.-+.+ +-+.++..+.++-..+-|.-||+||...
T Consensus 108 ~TIWD~IHfL~li~DDmV~nR~k~~~d~v~~~l~n~K~lfYNiF~~L~C~mC~~HYl~V 166 (266)
T 3p0k_A 108 TTIWDTMHFLSLIIDDMVYTRDKSSLDFVMQQLKTMKVLFYNVFFILQCAMCRDHYMNV 166 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHCCCCSSCCHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHHHHHHHhhHhheeCChHHhHHHEee
Confidence 47899999997532 2232322 2345666666655678999999999643
No 13
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=37.07 E-value=10 Score=18.81 Aligned_cols=14 Identities=29% Similarity=0.852 Sum_probs=10.9
Q ss_pred ccCChhHHHHHHHH
Q 039511 122 MYPCKECADHFKEV 135 (198)
Q Consensus 122 fyPC~~Cr~hF~~~ 135 (198)
-|.|..|...|...
T Consensus 2 p~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 2 PYVCERCGKRFVQS 15 (26)
Confidence 37899999988653
No 14
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=29.78 E-value=16 Score=18.38 Aligned_cols=14 Identities=21% Similarity=0.603 Sum_probs=10.8
Q ss_pred ccCChhHHHHHHHH
Q 039511 122 MYPCKECADHFKEV 135 (198)
Q Consensus 122 fyPC~~Cr~hF~~~ 135 (198)
-|.|..|...|...
T Consensus 2 ~~~C~~C~k~f~~~ 15 (29)
T 2lvt_A 2 PCQCVMCGKAFTQA 15 (29)
Confidence 37899999888643
No 15
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=27.65 E-value=19 Score=18.06 Aligned_cols=14 Identities=29% Similarity=0.788 Sum_probs=10.9
Q ss_pred ccCChhHHHHHHHH
Q 039511 122 MYPCKECADHFKEV 135 (198)
Q Consensus 122 fyPC~~Cr~hF~~~ 135 (198)
-|.|..|...|...
T Consensus 3 ~~~C~~C~k~f~~~ 16 (30)
T 2lvr_A 3 PYVCIHCQRQFADP 16 (30)
Confidence 47899999888643
No 16
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A
Probab=21.58 E-value=50 Score=27.20 Aligned_cols=57 Identities=16% Similarity=0.296 Sum_probs=33.2
Q ss_pred ccCChhHHHHHHHHHHhCCCC-----------CCCHHHHHHHHHHHhHHHHhhhCCCCCChhhHHHhhCcCC
Q 039511 122 MYPCKECADHFKEVLRANPVQ-----------AGSHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLE 182 (198)
Q Consensus 122 fyPC~~Cr~hF~~~l~~~P~~-----------vsSR~~l~lWLw~~HN~VN~rLgKp~f~c~~v~eRw~~~~ 182 (198)
-=||.+|+....+++.+++.. ...+ +...=|+.++ .+-....+.+.+++...|.+.=
T Consensus 94 wSPC~~CA~~va~FL~~~~~v~L~If~aRLY~~~~~-~~q~gLr~L~---~~G~~v~iM~~~eF~~CW~~FV 161 (190)
T 3vow_A 94 WSPCPDCAGEVAEFLARHSNVNLTIFTARLYYFQYP-CYQEGLRSLS---QEGVAVEIMDYEDFKYCWENFV 161 (190)
T ss_dssp ECCCHHHHHHHHHHHHHCTTEEEEEEEEECTTTTSH-HHHHHHHHHH---HHTCEEEECCHHHHHHHHHHHB
T ss_pred CCchHHHHHHHHHHHHhCCCeEEEEEEEecccccCc-hHHHHHHHHH---HCCCcEEEeChHHHHHHHHHhc
Confidence 459999999999999987641 1111 2222233332 2333344556677777775533
No 17
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=20.27 E-value=48 Score=27.56 Aligned_cols=60 Identities=12% Similarity=0.247 Sum_probs=34.5
Q ss_pred ccCChhHHHHHHHHHHhCCCCC----CC-----HHHHHHHHHHHhHHHHhhhCCCCCChhhHHHhhCcCCCC
Q 039511 122 MYPCKECADHFKEVLRANPVQA----GS-----HDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLECE 184 (198)
Q Consensus 122 fyPC~~Cr~hF~~~l~~~P~~v----sS-----R~~l~lWLw~~HN~VN~rLgKp~f~c~~v~eRw~~~~~~ 184 (198)
-=||.+|+....+++.++|... .+ ..+...-|+.++.. .....+.+..++...|.+.=..
T Consensus 108 WSPC~~CA~~v~~FL~~~~~v~L~If~aRLY~~~~~~~~gLr~L~~a---G~~v~iM~~~ef~~CW~~FV~n 176 (203)
T 3v4k_A 108 WSPCFSCAQEMAKFISKNKHVSLCIKTARIYDDQGRCQEGLRTLAEA---GAKISIMTYSEFKHCWDTFVDH 176 (203)
T ss_pred CCChHHHHHHHHHHHhhCCCeEEEEEEEeecccCchHHHHHHHHHHC---CCeEEecCHHHHHHHHHHHccC
Confidence 4599999999999999876410 01 22334445554432 2223344556666666554433
Done!