BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039512
(154 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q91YJ3|THYN1_MOUSE Thymocyte nuclear protein 1 OS=Mus musculus GN=Thyn1 PE=1 SV=1
Length = 226
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 33/164 (20%)
Query: 7 YWLLKTEPG---------EWSWEDQAANGGVTK-WDGVKNKQAQKNMKAMRLNELCFFYH 56
YWL+K+EP ++S ED A T WDGV+N QA+ ++AM+L + FFYH
Sbjct: 57 YWLMKSEPESRLEKGIDMKFSIEDLKAQPKQTACWDGVRNYQARNFLRAMKLEDEAFFYH 116
Query: 57 SGARSRRVVGVVSVLREWY------EESGDGAGAGA---------VDVKEVGMMRRAVDL 101
S + +VG++ +++E Y E+S + VDV+ V MM+R + L
Sbjct: 117 SNCKQPGIVGLMKIVKEAYPDHTQFEKSNPHYDPSSKEDDPKWSMVDVQFVRMMKRFIPL 176
Query: 102 KEMKRDQE--------LKGWALFRQPRLSVVNVEKKVWDRVCDL 137
+E+K + LK LF + RLSV + ++ +D + L
Sbjct: 177 EELKTYHQAHKATGGPLKSMTLFTRQRLSVQPLTQEEFDFILSL 220
>sp|Q6P3E0|THYN1_RAT Thymocyte nuclear protein 1 OS=Rattus norvegicus GN=Thyn1 PE=2 SV=1
Length = 226
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 80/164 (48%), Gaps = 33/164 (20%)
Query: 7 YWLLKTEPG---------EWSWED-QAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYH 56
YWL+K+EP ++S ED QA T WDGV+N QA ++AM+L + FFYH
Sbjct: 57 YWLMKSEPESRLEKGIDMKFSIEDLQAQPKQTTCWDGVRNYQAWNFLRAMKLEDEAFFYH 116
Query: 57 SGARSRRVVGVVSVLREWYEESG---------------DGAGAGAVDVKEVGMMRRAVDL 101
S + +VG++ +++E Y + D VDV+ V MM+R + L
Sbjct: 117 SNCKQPGIVGLMKIVKEAYPDHTQFEKNDPHYDPSSKEDNPKWSMVDVQFVRMMKRFISL 176
Query: 102 KEMKRDQE--------LKGWALFRQPRLSVVNVEKKVWDRVCDL 137
E+K + LK LF + RLSV + ++ +D + L
Sbjct: 177 DELKTYHQAHKATGGPLKSMTLFTRQRLSVQPLTQEEFDFILSL 220
>sp|Q9P016|THYN1_HUMAN Thymocyte nuclear protein 1 OS=Homo sapiens GN=THYN1 PE=1 SV=1
Length = 225
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 33/164 (20%)
Query: 7 YWLLKTEPG---------EWSWED-QAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYH 56
+WL+K+EP ++S ED +A T WDGV+N QA+ ++AM+L E FFYH
Sbjct: 56 HWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYH 115
Query: 57 SGARSRRVVGVVSVLREWYEESG---------------DGAGAGAVDVKEVGMMRRAVDL 101
S + + G++ +++E Y + D VDV+ V MM+R + L
Sbjct: 116 SNCKEPGIAGLMKIVKEAYPDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPL 175
Query: 102 KEMKRDQE--------LKGWALFRQPRLSVVNVEKKVWDRVCDL 137
E+K + LK LF + RLS+ + ++ +D V L
Sbjct: 176 AELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEFDFVLSL 219
>sp|Q90679|THYN1_CHICK Thymocyte nuclear protein 1 OS=Gallus gallus GN=THYN1 PE=1 SV=1
Length = 242
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 33/164 (20%)
Query: 7 YWLLKTEPG---------EWSWED-QAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYH 56
+WLLK+EP ++S ED +A T W+GV+N QA+ ++AM+L + FFYH
Sbjct: 73 HWLLKSEPESRLEKGVDVKFSIEDLKAQPNQTTFWEGVRNYQARNFLRAMKLGQQAFFYH 132
Query: 57 SGARSRRVVGVVSVLREWYEESG---------------DGAGAGAVDVKEVGMMRRAVDL 101
S + +VG+V +++E Y + + VDV+ V M +R + L
Sbjct: 133 SNCKEPGIVGIVKIVKEAYPDHTQFDQKDPHYDSSSRKENPKWSMVDVQFVRMTKRFIPL 192
Query: 102 KEMKRDQ--------ELKGWALFRQPRLSVVNVEKKVWDRVCDL 137
E+K LK LF + RLS+ + ++ +D V L
Sbjct: 193 SEIKTHHLAHKADGGPLKNMMLFSRQRLSIQPLTQEEFDFVLSL 236
>sp|Q6PFL8|THYN1_DANRE Thymocyte nuclear protein 1 OS=Danio rerio GN=thyn1 PE=2 SV=1
Length = 231
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 33/163 (20%)
Query: 8 WLLKTEPG---------EWSWEDQAANGGVT-KWDGVKNKQAQKNMKAMRLNELCFFYHS 57
WL+K+EP ++ ED A T WDGV+N QA+ M+ M++ + FFYHS
Sbjct: 63 WLMKSEPESRIENGVDVKFGIEDLKALPNQTGCWDGVRNYQARNFMREMKVGQQAFFYHS 122
Query: 58 GARSRRVVGVVSVLREWY---------------EESGDGAGAGAVDVKEVGMMRRAVDLK 102
+ + G++ +++E Y D VDV+ M++R + L
Sbjct: 123 NCKEPGIAGLMKIVKEAYVDHTQFDKKDVHYDPSSKADNPKWHMVDVQFERMVKRFIPLA 182
Query: 103 EMKRDQ--------ELKGWALFRQPRLSVVNVEKKVWDRVCDL 137
E+K+ LK ALF + RLSV + + ++ V L
Sbjct: 183 ELKKYHLEHRVKGGPLKDMALFTRARLSVQPLTAEEFEFVLSL 225
>sp|O94645|YBV3_SCHPO Uncharacterized protein C21.03c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC21.03c PE=4 SV=3
Length = 239
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 74/168 (44%), Gaps = 32/168 (19%)
Query: 2 GKERQYWLLKTEPGEWSW-------------EDQAANGGVTKWDGVKNKQAQKNMK-AMR 47
++R+YWL+K E GE + E+ +G + W GV+N +A+ ++ ++
Sbjct: 5 AEKRRYWLMKAE-GEPRYVKGINVAFTFEMLEEITEDGKMESWSGVRNYEARNMIRDEIK 63
Query: 48 LNELCFFYHSGARSRRVVGVVSVLR-------------EWYEESGDGAGAG--AVDVKEV 92
+ + F Y S + + GV+ + +Y+ +V V+
Sbjct: 64 IGDYAFLYCSNCKFPHIKGVMRICSNSHPDDSAWNSNDPYYDPKSTPQNPRWYSVGVQSE 123
Query: 93 GMMRRAVDLKEMK--RDQELKGWALFRQPRLSVVNVEKKVWDRVCDLG 138
+ R V L+E+K ++ +LK L + RLS+ V+ + W + +L
Sbjct: 124 YKLDRPVTLRELKMHKENQLKSMELLNRSRLSISRVKPEEWKFIHELS 171
>sp|P45632|EXOC_AZOBR Phosphomannomutase OS=Azospirillum brasilense GN=exoC PE=3 SV=2
Length = 469
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 122 SVVNVEKKVWDRVCDLGGGFDGDGEK 147
++V+++ V + CD+G GFDGDG++
Sbjct: 220 NLVDLKAAVAEHGCDIGIGFDGDGDR 245
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.135 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,555,972
Number of Sequences: 539616
Number of extensions: 2521102
Number of successful extensions: 6122
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6109
Number of HSP's gapped (non-prelim): 10
length of query: 154
length of database: 191,569,459
effective HSP length: 107
effective length of query: 47
effective length of database: 133,830,547
effective search space: 6290035709
effective search space used: 6290035709
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 56 (26.2 bits)