Query 039512
Match_columns 154
No_of_seqs 143 out of 669
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 17:55:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039512.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039512hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eve_A Hypothetical protein ps 100.0 2.7E-70 9.2E-75 428.6 13.1 134 5-139 1-150 (157)
2 3eop_A Thymocyte nuclear prote 100.0 3.4E-70 1.2E-74 433.9 11.6 135 5-139 1-168 (176)
3 2gbs_A Hypothetical protein RP 100.0 2E-69 7E-74 419.4 14.1 134 5-140 1-137 (145)
4 1zce_A Hypothetical protein AT 100.0 1.8E-68 6.2E-73 417.8 14.1 134 4-139 1-138 (155)
5 2ar1_A Hypothetical protein; s 100.0 1.2E-68 4.2E-73 424.5 12.6 136 3-139 17-167 (172)
6 2p5d_A UPF0310 protein mjecl36 100.0 1.7E-45 6E-50 284.2 9.8 123 4-137 3-147 (147)
7 2hd9_A UPF0310 protein PH1033; 100.0 2.7E-40 9.3E-45 254.7 9.0 119 5-137 1-143 (145)
8 2kku_A Uncharacterized protein 96.6 0.0012 4.1E-08 51.6 3.0 58 42-100 54-147 (161)
9 2yud_A YTH domain-containing p 85.1 10 0.00034 29.5 10.2 128 4-139 25-164 (180)
10 2yu6_A YTH domain-containing p 83.2 5.3 0.00018 29.8 7.6 126 4-137 7-137 (141)
11 2k1g_A Lipoprotein SPR; soluti 76.1 1.9 6.4E-05 32.0 3.0 23 44-68 66-88 (135)
12 2dp9_A Hypothetical protein TT 68.7 11 0.00038 27.2 5.7 52 48-103 37-109 (124)
13 2jyx_A Lipoprotein SPR; soluti 62.6 5.3 0.00018 29.1 2.9 22 45-68 67-88 (136)
14 3gt2_A Putative uncharacterize 52.9 6.4 0.00022 28.8 1.9 22 44-68 88-109 (142)
15 2hbw_A NLP/P60 protein; NLP/P6 47.4 14 0.00046 29.6 3.2 23 44-68 159-181 (235)
16 3bij_A Uncharacterized protein 46.6 13 0.00045 29.9 3.0 20 40-59 65-84 (285)
17 3npf_A Putative dipeptidyl-pep 43.1 17 0.00057 29.5 3.1 13 44-56 219-231 (306)
18 1y71_A Kinase-associated prote 42.3 52 0.0018 24.5 5.4 50 41-103 2-53 (130)
19 4dot_A Group XVI phospholipase 39.2 10 0.00034 28.4 1.1 14 45-58 7-20 (140)
20 4fdy_A Similar to lipoprotein, 38.8 16 0.00055 30.5 2.4 24 45-68 252-277 (313)
21 4af8_A Metacaspase MCA2; hydro 38.3 20 0.00068 30.7 3.0 19 41-59 160-178 (367)
22 4dpz_X HRAS-like suppressor 2; 38.2 12 0.0004 27.9 1.4 13 45-57 7-19 (137)
23 4f6o_A Metacaspase-1; rossmann 38.0 19 0.00064 30.7 2.8 19 41-59 120-138 (350)
24 1lpl_A Hypothetical 25.4 kDa p 37.8 99 0.0034 21.4 6.3 62 41-117 7-68 (95)
25 1wid_A DNA-binding protein RAV 34.7 40 0.0014 24.1 3.8 19 40-58 84-104 (130)
26 3h41_A NLP/P60 family protein; 33.9 20 0.00069 29.3 2.3 25 44-68 248-273 (311)
27 4hpe_A Putative cell WALL hydr 33.3 31 0.001 28.4 3.3 24 45-68 248-273 (308)
28 3ne0_A Resuscitation promoting 31.8 21 0.0007 28.4 1.9 22 44-68 157-178 (214)
29 3pbi_A Invasion protein; pepti 31.8 26 0.00089 27.7 2.5 22 44-68 157-178 (214)
30 1yel_A AT1G16640; CESG, protei 27.9 44 0.0015 22.7 2.9 20 40-59 70-91 (104)
31 3iez_A RAS GTPase-activating-l 23.7 78 0.0027 22.8 3.6 49 10-68 17-65 (114)
32 1at0_A 17-hedgehog; developmen 23.1 59 0.002 23.6 2.9 32 42-73 88-122 (145)
33 2if6_A Hypothetical protein YI 22.0 33 0.0011 25.7 1.3 12 45-56 4-15 (186)
34 1pcq_O Groes protein; chaperon 21.8 35 0.0012 24.0 1.4 12 45-56 58-69 (97)
35 1p3h_A 10 kDa chaperonin; beta 21.6 35 0.0012 24.0 1.4 12 45-56 61-72 (99)
36 1we3_O CPN10(groes); chaperoni 21.4 36 0.0012 24.1 1.4 12 45-56 63-74 (100)
37 1te7_A Hypothetical UPF0267 pr 21.3 1.1E+02 0.0038 20.9 4.0 26 46-73 33-58 (103)
38 1xvs_A Protein APAG; MCSG APC2 21.3 36 0.0012 24.9 1.4 25 46-71 75-103 (126)
39 3nx6_A 10KDA chaperonin; bacte 20.4 39 0.0013 23.6 1.4 12 45-56 58-69 (95)
40 1xq4_A Protein APAG; all beta 20.3 38 0.0013 25.2 1.4 26 46-72 80-109 (139)
No 1
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=100.00 E-value=2.7e-70 Score=428.59 Aligned_cols=134 Identities=29% Similarity=0.543 Sum_probs=128.5
Q ss_pred ceeEEeecCCCceehhcchhcCCceeecccccHHHHHHHHhccCCCEEEEEEeCCCCCeEEEEEEEeeecccCCCC----
Q 039512 5 RQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVVSVLREWYEESGD---- 80 (154)
Q Consensus 5 m~YWLlKsEP~~fsiddl~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~gIvGiaeVv~~aypD~t~---- 80 (154)
|+||||||||++||||||.+ ++++.||||||||||||||+||+||+||||||||++|||||||+|++++|||||+
T Consensus 1 M~YWL~KsEP~~~Siddl~~-~~~~~WdGVRNyqArN~mr~Mk~GD~~ffYHS~c~~pgIvGi~eVv~e~ypD~t~fdp~ 79 (157)
T 2eve_A 1 MAYWLMKSEPDEFSISDLQR-LGKARWDGVRNYQARNFLRTMAEGDEFFFYHSSCPEPGIAGIGKIVKTAYPDPTALDPD 79 (157)
T ss_dssp -CEEEEEECTTTSCHHHHHH-HSEEEECCCCCHHHHHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEEECGGGGCTT
T ss_pred CceeeEecCCCeeeHHHHhc-CCcEecCCcccHHHHHHHHhcCCCCEEEEEecCCCCCEEEEEEEEeEccCCCccccccc
Confidence 78999999999999999998 4789999999999999999999999999999999999999999999999999983
Q ss_pred -----------CCCeeEEEEEEeeeeCCccChhhHhcCccccCceeccc-CCCcceecCHHHHHHHHHhcC
Q 039512 81 -----------GAGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQ-PRLSVVNVEKKVWDRVCDLGG 139 (154)
Q Consensus 81 -----------~prw~~Vdv~~~~~l~~pv~L~~Lk~~p~L~~m~llr~-~RLSV~pVt~eew~~I~~l~~ 139 (154)
+|||++|||+|+++|++||||++||++|+|++|.|||+ +||||+|||++||++|++|+-
T Consensus 80 s~YyDpks~~~~prw~~VdV~~v~~~~~pv~L~elK~~~~L~~m~Lv~~g~RLSV~PVt~~ew~~I~~l~~ 150 (157)
T 2eve_A 80 SHYHDAKATTEKNPWSALDIGFVDIFKNVLGLGYLKQQSQLEQLPLVQKGSRLSVMPVTAEQWAAILALRL 150 (157)
T ss_dssp STTCCTTCCSSCCCCEEEEEEEEEEEEEEEEHHHHHTCGGGTTCGGGSTTCCCSEEEECHHHHHHHHHHHC
T ss_pred CcCcCcccCCCCCCEEEEEEEEeeecCCccCHHHHhcCcccccCceeeccCCcCceecCHHHHHHHHHHhh
Confidence 67899999999999999999999999999999999999 799999999999999999873
No 2
>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0
Probab=100.00 E-value=3.4e-70 Score=433.87 Aligned_cols=135 Identities=36% Similarity=0.596 Sum_probs=128.0
Q ss_pred ceeEEeecCCCc---------eehhcchhc-CCceeecccccHHHHHHHHhccCCCEEEEEEeCCCCCeEEEEEEEeeec
Q 039512 5 RQYWLLKTEPGE---------WSWEDQAAN-GGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVVSVLREW 74 (154)
Q Consensus 5 m~YWLlKsEP~~---------fsiddl~~~-~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~gIvGiaeVv~~a 74 (154)
|+||||||||++ ||||||.+. +++++||||||||||||||+||+||+||||||||++|||||||+||+++
T Consensus 1 m~yWLmKSEP~~r~e~g~dv~fSidDl~~~~~~~~~WdGVRNyqARN~mR~Mk~GD~~fFYHSnck~pgIvGi~eVv~e~ 80 (176)
T 3eop_A 1 MSHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYHSNCKEPGIAGLMKIVKEA 80 (176)
T ss_dssp -CEEEEEEBSSCCBSSSSBCBCCSHHHHTSGGGEEECCCCCCHHHHHHHHHCCTTCEEEEEECCSSSCEEEEEEEEEEEE
T ss_pred CceeeeeeCCCcccccCccceEeHHHHHhccCCCCcccCcccHHHHHHHHhcCCCCEEEEEecCCCCCeEEEEEEEeecc
Confidence 789999999995 999999874 4578999999999999999999999999999999999999999999999
Q ss_pred ccCCCC---------------CCCeeEEEEEEeeeeCCccChhhHhcCc--------cccCceecccCCCcceecCHHHH
Q 039512 75 YEESGD---------------GAGAGAVDVKEVGMMRRAVDLKEMKRDQ--------ELKGWALFRQPRLSVVNVEKKVW 131 (154)
Q Consensus 75 ypD~t~---------------~prw~~Vdv~~~~~l~~pv~L~~Lk~~p--------~L~~m~llr~~RLSV~pVt~eew 131 (154)
|||||+ +|||++|||+|+++|++||||++||++| .|++|.|||++||||+|||++||
T Consensus 81 ypD~T~fDp~s~YyDpkS~~~~prW~~VdV~~v~~~~~~vtL~eLK~~~~~~~~~~~~L~~m~Lvr~~RLSV~PVt~~ew 160 (176)
T 3eop_A 81 YPDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEF 160 (176)
T ss_dssp EECGGGTCTTSTTCCTTCCTTSCSCEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHTCTTSSCHHHHCTTCSEEEECHHHH
T ss_pred ccCCcccCCCCCCCCccCcCCCCCEEEEEEEEeeecCCcccHHHHhcCcccccccccccccCceeccCccCceecCHHHH
Confidence 999983 6899999999999999999999999997 99999999999999999999999
Q ss_pred HHHHHhcC
Q 039512 132 DRVCDLGG 139 (154)
Q Consensus 132 ~~I~~l~~ 139 (154)
++|++|+.
T Consensus 161 ~~I~~l~~ 168 (176)
T 3eop_A 161 DFVLSLEE 168 (176)
T ss_dssp HHHHHGGG
T ss_pred HHHHHHHh
Confidence 99999984
No 3
>2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG, structural genomics, COG294 protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: b.122.1.8
Probab=100.00 E-value=2e-69 Score=419.38 Aligned_cols=134 Identities=37% Similarity=0.736 Sum_probs=129.8
Q ss_pred ceeEEeecCCCceehhcchhcCCc--eeecccccHHHHHHHHhccCCCEEEEEEeCCCCCeEEEEEEEeeecccCCCC-C
Q 039512 5 RQYWLLKTEPGEWSWEDQAANGGV--TKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVVSVLREWYEESGD-G 81 (154)
Q Consensus 5 m~YWLlKsEP~~fsiddl~~~~~~--~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~gIvGiaeVv~~aypD~t~-~ 81 (154)
|+||||||||+.||||||.+. ++ +.||||||||||||||+||+||+||||||| ++|||||||+|++++|||||+ +
T Consensus 1 M~YWL~KsEP~~~Siddl~~~-~~~~~~WdGVRNyqArn~mr~Mk~GD~~ffYHS~-~~~gIvGi~eVv~e~ypD~t~~~ 78 (145)
T 2gbs_A 1 VAYWLVKSEPSVWSWDQQVAK-GAAGEAWTGVRNHSAKLHMVAMRRGDRAFYYHSN-EGKEIVGIAEIIREAYPDPTDAS 78 (145)
T ss_dssp CCEEEEEECTTTSCHHHHHTT-TTTCEECCCCCCHHHHHHHHHCCTTCEEEEEETT-TTCEEEEEEEEEEEEEECTTCTT
T ss_pred CceEEEEcCCCcCCHHHHHhc-CcccceeCCcccHHHHHHHHhcCCCCEEEEEEeC-CCCceEEEEEEEEeccCCCCCCC
Confidence 789999999999999999984 54 899999999999999999999999999999 899999999999999999998 8
Q ss_pred CCeeEEEEEEeeeeCCccChhhHhcCccccCceecccCCCcceecCHHHHHHHHHhcCC
Q 039512 82 AGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQPRLSVVNVEKKVWDRVCDLGGG 140 (154)
Q Consensus 82 prw~~Vdv~~~~~l~~pv~L~~Lk~~p~L~~m~llr~~RLSV~pVt~eew~~I~~l~~~ 140 (154)
|||++|||+|+++|++||||++||++|+|++|.|||++||||+|||++||++|++|++.
T Consensus 79 prw~~VdV~~v~~~~~pvtL~elK~~~~L~~m~lvr~~RLSV~pVt~~ew~~I~~l~~~ 137 (145)
T 2gbs_A 79 GKFVCVDIKADKPLKTPVTLAAVKAEPRLADMALMKYSRLSVQPVTAEEWKLVCKMGGL 137 (145)
T ss_dssp SCSEEEEEEEEEEEEEEEEHHHHHHCTTGGGSHHHHCTTCSSEEECHHHHHHHHHHTTC
T ss_pred CCEEEEEEEEceecCCcccHHHHhcCcCcccCeeeeccCCCceeeCHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999964
No 4
>1zce_A Hypothetical protein ATU2648; alpha-beta protein., structural genomics, PSI, protein struc initiative; 1.30A {Agrobacterium tumefaciens str} SCOP: b.122.1.8
Probab=100.00 E-value=1.8e-68 Score=417.76 Aligned_cols=134 Identities=40% Similarity=0.666 Sum_probs=129.0
Q ss_pred CceeEEeecCCCceehhcchhcCCc--eeecccccHHHHHHHHhccCCCEEEEEEeCCCCCeEEEEEEEeeecccCCCC-
Q 039512 4 ERQYWLLKTEPGEWSWEDQAANGGV--TKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVVSVLREWYEESGD- 80 (154)
Q Consensus 4 ~m~YWLlKsEP~~fsiddl~~~~~~--~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~gIvGiaeVv~~aypD~t~- 80 (154)
.|+||||||||+.||||||.+. ++ +.||||||||||||||+||+||+||||||| ++|||||||||++++|||||+
T Consensus 1 mM~YWL~KSEP~~~Siddl~~~-~~~~~~WdGVRNyqArN~mr~Mk~GD~~fFYHS~-~~~gIvGi~eVv~e~ypD~t~~ 78 (155)
T 1zce_A 1 MANYWLYKSEPFKWSWEMQKAK-GETGEEWTGVRNYQARNNMRAMKIGDKGFFYHSN-EGLDVVGIVEVCALSHPDSTAE 78 (155)
T ss_dssp -CCEEEEEECTTTSCHHHHHHH-GGGCEECCCCCCHHHHHHHHTCCTTCEEEEEETT-TTCEEEEEEEEEEEEEECTTST
T ss_pred CcceEEEEcCCCcCCHHHHHhc-CcccceecCcccHHHHHHHHhccCCCEEEEEEeC-CCCceEEEEEEeeeccCCCCcC
Confidence 3899999999999999999884 44 899999999999999999999999999999 899999999999999999997
Q ss_pred -CCCeeEEEEEEeeeeCCccChhhHhcCccccCceecccCCCcceecCHHHHHHHHHhcC
Q 039512 81 -GAGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQPRLSVVNVEKKVWDRVCDLGG 139 (154)
Q Consensus 81 -~prw~~Vdv~~~~~l~~pv~L~~Lk~~p~L~~m~llr~~RLSV~pVt~eew~~I~~l~~ 139 (154)
+|||++|||+|+++|++||||++||++|+|++|.|||++||||+|||++||++|++|++
T Consensus 79 d~Prw~~VdV~~v~~~~~pvtL~eLK~~~~L~~m~Lvr~~RLSV~PVt~~ew~~I~~l~~ 138 (155)
T 1zce_A 79 GDLKWDCVDIRAVCDMPQPVSLKDVKANPKLEKMSLVTSMRLSVQPVTEEEYLEVCRMGG 138 (155)
T ss_dssp TCSSCEEEEEEEEEEEEEEEEHHHHHHCGGGTTCHHHHCSSCSEEEECHHHHHHHHHHTT
T ss_pred CCCCeEEEEEEEccccCCcccHHHHhcCCCcccCeeeeccCCCceeeCHHHHHHHHHhhC
Confidence 67999999999999999999999999999999999999999999999999999999996
No 5
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=100.00 E-value=1.2e-68 Score=424.53 Aligned_cols=136 Identities=35% Similarity=0.564 Sum_probs=130.8
Q ss_pred CCceeEEeecCCCceehhcchhcCCceeecccccHHHHHHHHhccCCCEEEEEEeCCCCCeEEEEEEEeeecccCCCC--
Q 039512 3 KERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVVSVLREWYEESGD-- 80 (154)
Q Consensus 3 ~~m~YWLlKsEP~~fsiddl~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~gIvGiaeVv~~aypD~t~-- 80 (154)
..|+||||||||++||||||.+ ++++.||||||||||||||+||+||+||||||||++|||||||+|++++|||||+
T Consensus 17 ~~M~YWL~KSEP~~~Siddl~~-~~~~~WdGVRNyqARN~mr~Mk~GD~vfFYHS~c~~pgIvGi~eVv~e~ypD~t~fd 95 (172)
T 2ar1_A 17 EDIHYWLLKSEPHKFSIDDLAK-QKTSPWDGVRNYAARNNMRAMSVGDKVLFYHSNTKEPGVAGLAEVVRLAYDDFTALD 95 (172)
T ss_dssp TSCCEEEEEECTTTSCHHHHHH-HSEEECCCCCCHHHHHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEEECGGGGC
T ss_pred CccceEEEEcCCCccCHHHHHh-cCceeccCcCcHHHHHHHHhcCCCCEEEEEecCCCCCEEEEEEEEeeeccCCccccc
Confidence 3699999999999999999998 4779999999999999999999999999999999999999999999999999983
Q ss_pred -------------CCCeeEEEEEEeeeeCCccChhhHhcCccccCceecccCCCcceecCHHHHHHHHHhcC
Q 039512 81 -------------GAGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQPRLSVVNVEKKVWDRVCDLGG 139 (154)
Q Consensus 81 -------------~prw~~Vdv~~~~~l~~pv~L~~Lk~~p~L~~m~llr~~RLSV~pVt~eew~~I~~l~~ 139 (154)
+|||++|||+|+++|++||||++||++|+|++|.|||++||||+|||++||++|++|++
T Consensus 96 p~s~YyDpks~~~~prw~~VdV~~v~~~~~pvtL~eLK~~~~L~~m~Lvr~~RLSV~PVt~~ew~~I~~l~~ 167 (172)
T 2ar1_A 96 KTSEYFDPKATKEKNPWKMVDVKFVARWDTVLTLHELKSRRELQKMALFTQRRLSVQPVSASEYAYILRMNE 167 (172)
T ss_dssp TTSTTCCTTCCSSCCCCEEEEEEEEEEEEEEEEHHHHTTCGGGTTCHHHHCSSCSEEEECHHHHHHHHHHHH
T ss_pred ccCcccCcccCCCCCCeEEEEEEEeeecCCcccHHHHhcCcccccCeeeeccCCCceecCHHHHHHHHHhhh
Confidence 57899999999999999999999999999999999999999999999999999999983
No 6
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.7e-45 Score=284.24 Aligned_cols=123 Identities=18% Similarity=0.391 Sum_probs=112.3
Q ss_pred CceeEEeecCCCceehhcchhcCCceeecccccHHHHHHHHhccCCCEEEEE-----EeCCCCCeEEEEEEEeeecccCC
Q 039512 4 ERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFY-----HSGARSRRVVGVVSVLREWYEES 78 (154)
Q Consensus 4 ~m~YWLlKsEP~~fsiddl~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fY-----HS~~~~~gIvGiaeVv~~aypD~ 78 (154)
.|+|||+||||+. |+++.+. + .| || ||||||+||+||+||++||| ||||+.++||||++|++++|||+
T Consensus 3 ~m~YWL~~se~~~--~~~~~~~-g--~w-GV-n~~arn~lr~Mk~GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e~y~D~ 75 (147)
T 2p5d_A 3 LMAYWLCITNEDN--WKVIKEK-K--IW-GV-AERYKNTINKVKVGDKLIIYEIQRSGKDYKPPYIRGVYEVVSEVYKDS 75 (147)
T ss_dssp CCCEEEEEECHHH--HHHHHHH-C--EE-EE-CGGGHHHHTTCCTTCEEEEEECCBCSTTCBCCEEEEEEEECSCCEECC
T ss_pred cccceeeecCHHH--HHHHHHc-C--ee-ec-CHHHHHHHHhCCCCCEEEEEEecccCCCCCCCEEEEEEEEecccccCC
Confidence 4899999999999 5556553 3 67 99 99999999999999999999 99999999999999999999999
Q ss_pred CC----------CCCeeEEEEEEeeeeCCccChhhHh-------cCccccCceecccCCCcceecCHHHHHHHHHh
Q 039512 79 GD----------GAGAGAVDVKEVGMMRRAVDLKEMK-------RDQELKGWALFRQPRLSVVNVEKKVWDRVCDL 137 (154)
Q Consensus 79 t~----------~prw~~Vdv~~~~~l~~pv~L~~Lk-------~~p~L~~m~llr~~RLSV~pVt~eew~~I~~l 137 (154)
|+ +|+|++|||+++++|++||||++|| +.+.|++ .|+|++ |+|||+++|++|+++
T Consensus 76 t~~dp~~~y~~~~~~w~~VdV~~v~~~~~~v~L~~Lk~~L~fi~~~~~~~~-~L~r~g---v~pV~~~~~~~I~~~ 147 (147)
T 2p5d_A 76 SKIFKPTPRNPNEKFPYRVKLKEIKVFEPPINFKELIPKLKFITNKKRWSG-HLMGKA---MREIPEEDYKLIVGN 147 (147)
T ss_dssp CCCSCCBTTBTTCCCCEEEEEEEEEEEEEEEEHHHHGGGCTTCCCSSSCCC---CCCS---EEEECHHHHHHHHTC
T ss_pred cccCcCccCcCCCCCceEEEEEEEeecCCccCHHHHHhhhhhcccchhhHH-HHhcCC---ceECCHHHHHHHHhC
Confidence 85 6799999999999999999999999 8899999 889988 999999999999864
No 7
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=100.00 E-value=2.7e-40 Score=254.67 Aligned_cols=119 Identities=15% Similarity=0.274 Sum_probs=101.6
Q ss_pred ceeEEeecCCCceehhcchhcCCceeecccccHHHHHHHHhccCCCEEEEEEeCC-------CCCeEEEEEEEeeecccC
Q 039512 5 RQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGA-------RSRRVVGVVSVLREWYEE 77 (154)
Q Consensus 5 m~YWLlKsEP~~fsiddl~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~-------~~~gIvGiaeVv~~aypD 77 (154)
|+|||+||+|+.| ++..+ ..|.|| ||||||+||+||+||++||||||| +.++||||++|++++|||
T Consensus 1 M~YWL~kss~d~~--~~~~~----~g~~GV-n~~arn~lr~mk~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~D 73 (145)
T 2hd9_A 1 MTYWICITNRENW--EVIKR----HNVWGV-PKKHKNTLSRVKPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYVD 73 (145)
T ss_dssp CCEEEEEECHHHH--HHHHH----HCEEEE-CGGGHHHHTTCCTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEEC
T ss_pred CceEEEeCCHHHH--HHHHH----cCcccc-CHHHHHHHHhCCCCCEEEEEEccccccCCCCCCceEEEEEEEcCCcEeC
Confidence 7899999977765 33222 336699 999999999999999999999998 679999999999999999
Q ss_pred CCC---------CCCeeEEEEEEeeeeCCccChhhHhcCccccCceeccc--------CCCcceecCHHHHHHHHHh
Q 039512 78 SGD---------GAGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQ--------PRLSVVNVEKKVWDRVCDL 137 (154)
Q Consensus 78 ~t~---------~prw~~Vdv~~~~~l~~pv~L~~Lk~~p~L~~m~llr~--------~RLSV~pVt~eew~~I~~l 137 (154)
+|+ +++|++|+|+++.. ++|++++|++ +|.++++ .|+||+|||+++|+.|++.
T Consensus 74 ~t~~~~~~~~~~~~~p~rv~v~~v~~--~~i~~~~l~~-----~l~fi~~k~~w~~~l~r~gv~pV~~~d~~~I~~~ 143 (145)
T 2hd9_A 74 FSRIFKPHRGGKETYPYRVKIKPIKI--GEINFKPLIN-----DLKFIKNKKRWSMHFFGKAMRELPEEDYKLIEKL 143 (145)
T ss_dssp CCCCSCCTTSSCCCCCEEEEEEEEEE--EEEESGGGGG-----GCTTCCCSTTGGGGTTTCSEEEECHHHHHHHHHH
T ss_pred CCccCCCcccccCCeeEEEeCEEEee--ccCcHHHHHh-----hhhhhcccccccceecccCceEcCHHHHHHHHHh
Confidence 985 35899999999976 7899988884 5666665 6889999999999999864
No 8
>2kku_A Uncharacterized protein; alpha/beta protein, structural genomics, PSI-2, protein STRU initiative; NMR {Archaeoglobus fulgidus}
Probab=96.57 E-value=0.0012 Score=51.57 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=47.3
Q ss_pred HHH-hccCCCEEEEEEeCCCCCeEEEEEEEeeecc-cCCCC----------------------CCC------------ee
Q 039512 42 NMK-AMRLNELCFFYHSGARSRRVVGVVSVLREWY-EESGD----------------------GAG------------AG 85 (154)
Q Consensus 42 ~lr-~Mk~GD~~~fYHS~~~~~gIvGiaeVv~~ay-pD~t~----------------------~pr------------w~ 85 (154)
.++ .+++||.|+||.|. +..+|||.++|-+--. .+|.+ ..+ |+
T Consensus 54 ~v~~~l~~Gd~vviYaS~-P~~~iVGea~I~~Ii~~~~P~~lWe~~~d~~gITkeef~~Yy~g~~~w~~~~~~~~~~~~~ 132 (161)
T 2kku_A 54 TVWKELKPGMKFVFYQSH-EDTGFVGEARIKRVVLSENPMQFFETFGDRVFLTKDELKEYMKSQERWGRRRESKKKKLWM 132 (161)
T ss_dssp CSCTTCCTTEEEEECCCS-TTCBCCEEEEEEEEEEESCTHHHHHHTSTTBSSCHHHHHHHHHHHHHTSSCCCCSSCCCEE
T ss_pred CcccccCCCCEEEEEEcC-CCcEEEEEEEEEEEEecCCHHHHHHHhCcccCcCHHHHHHHhcccccccccccccccccEE
Confidence 354 58999999999999 8999999999988763 45541 013 99
Q ss_pred EEEEEEeeeeCCccC
Q 039512 86 AVDVKEVGMMRRAVD 100 (154)
Q Consensus 86 ~Vdv~~~~~l~~pv~ 100 (154)
++.++-+++|++||.
T Consensus 133 aI~L~~Vrky~~pvk 147 (161)
T 2kku_A 133 AIELEDVKKYDKPIK 147 (161)
T ss_dssp EEEEEEEEECCSCBC
T ss_pred EEEecceEeCCCCCC
Confidence 999999999999987
No 9
>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.10 E-value=10 Score=29.53 Aligned_cols=128 Identities=13% Similarity=0.139 Sum_probs=81.3
Q ss_pred CceeEEeecCCCceehhcchhcCCceeecccccHHHHHHHHhccCCCEEEEEEeCCCCCeEEEEEEEeeecccCCCC---
Q 039512 4 ERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVVSVLREWYEESGD--- 80 (154)
Q Consensus 4 ~m~YWLlKsEP~~fsiddl~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~gIvGiaeVv~~aypD~t~--- 80 (154)
.-+|.++|| ++.+|+...-....|.--++ .-+.+-.+.+.++.|++.=|-.+.....|+|+.++..-++.+.
T Consensus 25 ~arfFIIKS----~s~~ni~~Sik~gvWatt~~-n~~kL~~Af~~~~~V~L~FSVn~Sg~F~G~A~M~s~~~~~~~~~~W 99 (180)
T 2yud_A 25 DARFFLIKS----NNHENVSLAKAKGVWSTLPV-NEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHW 99 (180)
T ss_dssp TCEEEEEEE----SCHHHHHHHHHHTEECCCHH-HHHHHHHHHHHSSCEEEEEEETTTSEEEEEEEEEEEEECSSCCCCC
T ss_pred ceEEEEEEe----CCHHHHHHHHHcCEeecccc-cHHHHHHHHhhCCeEEEEEEeCCCCcEEEEEEEccCCCCCCCCccc
Confidence 457999998 57788765434578964442 2233444555555565555655789999999999986443221
Q ss_pred -------CCCe-eEEEEEEeeeeCCccChhhHhcCc-cccCceecccCCCcceecCHHHHHHHHHhcC
Q 039512 81 -------GAGA-GAVDVKEVGMMRRAVDLKEMKRDQ-ELKGWALFRQPRLSVVNVEKKVWDRVCDLGG 139 (154)
Q Consensus 81 -------~prw-~~Vdv~~~~~l~~pv~L~~Lk~~p-~L~~m~llr~~RLSV~pVt~eew~~I~~l~~ 139 (154)
..+| ....|+-+.. ..||...++..- .+-+...|+.+| --+.|.++.=..+|+|-.
T Consensus 100 ~~~~~~~~~~~~g~F~V~Wi~~--~dvPf~~~~hl~n~~NenkpV~~sR-DgqEI~~~~G~~L~~lf~ 164 (180)
T 2yud_A 100 VLPAGMSAKMLGGVFKIDWICR--RELPFTKSAHLTNPWNEHKPVKIGR-DGQEIELECGTQLCLLFP 164 (180)
T ss_dssp CCCSSCCGGGGCSEEEEEEEEC--SCEEHHHHTTCCBTTTTSBCTTSCC-TTEEECHHHHHHHHHHSC
T ss_pred cccCccchhhcCCceEEEEEEe--ecCCchhhhhccccccCCCeeeeCC-CCEEcCHHHHHHHHHhcc
Confidence 1124 4555666655 578888877542 243444455555 348888888888888764
No 10
>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.22 E-value=5.3 Score=29.84 Aligned_cols=126 Identities=14% Similarity=0.173 Sum_probs=72.0
Q ss_pred CceeEEeecCCCceehhcchhcCCceeecccccHHHHHHHHhccCCCEEEEEEeCCCCCeEEEEEEEeeecccCCCC---
Q 039512 4 ERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVVSVLREWYEESGD--- 80 (154)
Q Consensus 4 ~m~YWLlKsEP~~fsiddl~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~gIvGiaeVv~~aypD~t~--- 80 (154)
.-+|.++|| ++.+|+...-....|.=.++-. +.+-.+-+.++.|++.=|-.+.....|+|+.++..-..++.
T Consensus 7 ~~rfFIiKS----~s~~ni~~S~k~gvW~tt~~~~-~~L~~Af~~~~~V~L~FSvn~Sg~F~G~A~M~s~~~~~~~~~W~ 81 (141)
T 2yu6_A 7 GVRYFIMKS----SNLRNLEISQQKGIWSTTPSNE-RKLNRAFWESSIVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWG 81 (141)
T ss_dssp CCEEEEEEE----SSSHHHHHHHHTCEEECCTTSH-HHHHHHHHHSSCEEEEEEESSSSEECEEEEECSCSSSCCCCCCS
T ss_pred CcEEEEEEe----CCHHHHHHHHHcCEeeccCccH-HHHHHHHhcCCcEEEEEEECCCCeEEEEEEEcccCCCCCCcccc
Confidence 467999998 4667765543457896444322 33444555555666666654789999999999986332221
Q ss_pred CCCe-eEEEEEEeeeeCCccChhhHhcCc-cccCceecccCCCcceecCHHHHHHHHHh
Q 039512 81 GAGA-GAVDVKEVGMMRRAVDLKEMKRDQ-ELKGWALFRQPRLSVVNVEKKVWDRVCDL 137 (154)
Q Consensus 81 ~prw-~~Vdv~~~~~l~~pv~L~~Lk~~p-~L~~m~llr~~RLSV~pVt~eew~~I~~l 137 (154)
..+| ....|+-+.. ..||...++..- .+-+...++.+|= -+.|.++.=..++++
T Consensus 82 ~~~~~g~F~V~Wi~~--~~vpf~~~~hl~n~~N~nk~V~~~RD-gqEi~~~~G~~l~~i 137 (141)
T 2yu6_A 82 SAGLGGVFKVEWIRK--ESLPFQFAHHLLNPWNDNKKVQISRD-GQELEPQVGEQLLQL 137 (141)
T ss_dssp CSCCCCEEEEEEEEC--SCEEHHHHTSCEETTSTTEETTCCCT-TEEECTTHHHHHHGG
T ss_pred ccccCCcEEEEEEEe--ecCChHHhhhcccccCCCCeEEeCCC-CEEcCHHHHHHHHHH
Confidence 2234 3445555554 678888887542 2333334444432 244554444444443
No 11
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=76.14 E-value=1.9 Score=31.99 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=16.3
Q ss_pred HhccCCCEEEEEEeCCCCCeEEEEE
Q 039512 44 KAMRLNELCFFYHSGARSRRVVGVV 68 (154)
Q Consensus 44 r~Mk~GD~~~fYHS~~~~~gIvGia 68 (154)
.++|+||+|||.- + ....=|||+
T Consensus 66 ~~l~pGDLvFf~~-~-~~~~HVGIy 88 (135)
T 2k1g_A 66 SNLRTGDLVLFRA-G-STGRHVGIY 88 (135)
T ss_dssp GGCCTTEEEEEEE-T-TTEEEEEEE
T ss_pred HHccCCcEEEECC-C-CCCeEEEEE
Confidence 3699999999854 3 245567775
No 12
>2dp9_A Hypothetical protein TTHA0113; jellyroll, structural genomics, NPPSFA, national project on structural and functional analyses; 1.90A {Thermus thermophilus} SCOP: b.122.1.5 PDB: 1wk2_A
Probab=68.75 E-value=11 Score=27.18 Aligned_cols=52 Identities=8% Similarity=-0.041 Sum_probs=32.7
Q ss_pred CCCEEEEEEeCCCCCeEEEEEEEeeec-ccCC------------C--------CCCCeeEEEEEEeeeeCCccChhh
Q 039512 48 LNELCFFYHSGARSRRVVGVVSVLREW-YEES------------G--------DGAGAGAVDVKEVGMMRRAVDLKE 103 (154)
Q Consensus 48 ~GD~~~fYHS~~~~~gIvGiaeVv~~a-ypD~------------t--------~~prw~~Vdv~~~~~l~~pv~L~~ 103 (154)
..+.+++|-|| .|||+++|+.-- .-.| + ++..-++..++-++.|+.||+++.
T Consensus 37 ~rg~v~IhatG----~ivG~~~i~d~~g~~~~eel~~~~~~~~~~~~~~~~y~~g~~~ya~~l~~~~~l~~Pi~~~g 109 (124)
T 2dp9_A 37 HRGPLGIVSGG----RLIGQADLVGVEGPFSVEELLAHQEKHLAEEAFLRAYAKDEPLYAWVLENAFRYEKPLHVPR 109 (124)
T ss_dssp CCEEEEEEETT----EEEEEEEEEEEEEEECHHHHGGGHHHHCCCHHHHHHHHTTSCEEEEEEEEEEEEEEEEECCC
T ss_pred CCCEEEEEECC----CEEEEEEEEEEecCCCHHHHHHHhhhcCCCHHHhhhhhcCCceEEEEECCcEEcCCCccccc
Confidence 34556666653 789999987654 1000 0 112237777888889999998754
No 13
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=62.56 E-value=5.3 Score=29.07 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=16.4
Q ss_pred hccCCCEEEEEEeCCCCCeEEEEE
Q 039512 45 AMRLNELCFFYHSGARSRRVVGVV 68 (154)
Q Consensus 45 ~Mk~GD~~~fYHS~~~~~gIvGia 68 (154)
++++||++||..++ .+.=|||+
T Consensus 67 ~l~pGDLvff~~~~--~~~HVgIy 88 (136)
T 2jyx_A 67 NLRTGDLVLFRAGS--TGRHVGIY 88 (136)
T ss_dssp TCCTTEEEEEECSS--SSEEEEEE
T ss_pred hCCCCCEEEECCCC--CCCEEEEE
Confidence 58999999997655 25566664
No 14
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Probab=52.87 E-value=6.4 Score=28.82 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=14.6
Q ss_pred HhccCCCEEEEEEeCCCCCeEEEEE
Q 039512 44 KAMRLNELCFFYHSGARSRRVVGVV 68 (154)
Q Consensus 44 r~Mk~GD~~~fYHS~~~~~gIvGia 68 (154)
.++++||++||..++ .+=|||+
T Consensus 88 ~~~~pGDlvff~~~~---~~HVgIy 109 (142)
T 3gt2_A 88 QQARKGDLIFYGPEG---TQSVAMY 109 (142)
T ss_dssp GGCCTTCEEEESGGG---CSEEEEE
T ss_pred hhCCCCCEEEeCCCC---CCEEEEE
Confidence 369999999884332 3455664
No 15
>2hbw_A NLP/P60 protein; NLP/P60 family protein, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; HET: UNL; 1.05A {Anabaena variabilis} PDB: 2evr_A 2fg0_A
Probab=47.40 E-value=14 Score=29.60 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=16.3
Q ss_pred HhccCCCEEEEEEeCCCCCeEEEEE
Q 039512 44 KAMRLNELCFFYHSGARSRRVVGVV 68 (154)
Q Consensus 44 r~Mk~GD~~~fYHS~~~~~gIvGia 68 (154)
.++++||++||-..+ .++=|||+
T Consensus 159 ~~l~pGDLvff~~~~--~~~HVgIy 181 (235)
T 2hbw_A 159 DELAPGDLVFFGTPV--KATHVGLY 181 (235)
T ss_dssp GGCCTTCEEEEECSS--CEEEEEEE
T ss_pred hhCCCCCEEEECCCC--CCCEEEEE
Confidence 359999999885433 45667775
No 16
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}
Probab=46.61 E-value=13 Score=29.93 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=16.4
Q ss_pred HHHHHhccCCCEEEEEEeCC
Q 039512 40 QKNMKAMRLNELCFFYHSGA 59 (154)
Q Consensus 40 rn~lr~Mk~GD~~~fYHS~~ 59 (154)
+.+.+..++||.+|||-||-
T Consensus 65 ~~l~~~~~~~D~~~~yfSGH 84 (285)
T 3bij_A 65 GKAAKALGKGDIFMLSYSGH 84 (285)
T ss_dssp HHHHHHCCTTCEEEEEEESC
T ss_pred HHHHHhCCCCCEEEEEEcCC
Confidence 34556689999999999994
No 17
>3npf_A Putative dipeptidyl-peptidase VI; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CSA GOL; 1.72A {Bacteroides ovatus} PDB: 3pvq_A
Probab=43.14 E-value=17 Score=29.46 Aligned_cols=13 Identities=23% Similarity=0.503 Sum_probs=11.4
Q ss_pred HhccCCCEEEEEE
Q 039512 44 KAMRLNELCFFYH 56 (154)
Q Consensus 44 r~Mk~GD~~~fYH 56 (154)
.++++||++||-.
T Consensus 219 ~~~~pGDLvff~~ 231 (306)
T 3npf_A 219 SNVKRGDLVFFGR 231 (306)
T ss_dssp TTCCTTCEEEEEE
T ss_pred ccCCCccEEEECC
Confidence 4699999999987
No 18
>1y71_A Kinase-associated protein B; structural genomics, midwest CE structural genomics, MCSG, protein structure initiative, PS unknown function; 1.95A {Bacillus cereus} SCOP: b.34.16.1
Probab=42.34 E-value=52 Score=24.53 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=26.3
Q ss_pred HHHHh-ccCCCEEE-EEEeCCCCCeEEEEEEEeeecccCCCCCCCeeEEEEEEeeeeCCccChhh
Q 039512 41 KNMKA-MRLNELCF-FYHSGARSRRVVGVVSVLREWYEESGDGAGAGAVDVKEVGMMRRAVDLKE 103 (154)
Q Consensus 41 n~lr~-Mk~GD~~~-fYHS~~~~~gIvGiaeVv~~aypD~t~~prw~~Vdv~~~~~l~~pv~L~~ 103 (154)
+.|++ |.+||.|- ||.|| + =|++|+.+ .|.-+.|.|..|-+-+.-=+|..
T Consensus 2 ~~m~~~~~~g~~v~~~yKTG-----~-YigeI~e~-------~~~~~lVkVlaVlKHP~QGDLHn 53 (130)
T 1y71_A 2 NAMRETFEIGEIVTGIYKTG-----K-YIGEVTNS-------RPGSYVVKVLAVLKHPVQGDLHN 53 (130)
T ss_dssp -----CCCTTCEEEEEETTE-----E-EEEEEEEE-------ETTEEEEEEEEEEECCCC-----
T ss_pred cchhhcCCccceeEEEEecc-----e-eEEEEEee-------cCCeEEEEEEEEecCCCccCCCC
Confidence 35776 99999994 55555 2 34566654 23466777888777655545543
No 19
>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens}
Probab=39.15 E-value=10 Score=28.40 Aligned_cols=14 Identities=7% Similarity=0.050 Sum_probs=11.6
Q ss_pred hccCCCEEEEEEeC
Q 039512 45 AMRLNELCFFYHSG 58 (154)
Q Consensus 45 ~Mk~GD~~~fYHS~ 58 (154)
++++||++||+..+
T Consensus 7 ~~~pGDlv~~~~~~ 20 (140)
T 4dot_A 7 EPKPGDLIEIFRPF 20 (140)
T ss_dssp CCCTTCEEEEEETT
T ss_pred CCCCCCEEEEeCCC
Confidence 58999999998643
No 20
>4fdy_A Similar to lipoprotein, NLP/P60 family; SLT/lysozyme-like muramidase, NLPC/P60 LD endopeptidase, STR genomics; 2.23A {Staphylococcus aureus subsp}
Probab=38.81 E-value=16 Score=30.53 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=16.0
Q ss_pred hccCCCEEEEEEeCC--CCCeEEEEE
Q 039512 45 AMRLNELCFFYHSGA--RSRRVVGVV 68 (154)
Q Consensus 45 ~Mk~GD~~~fYHS~~--~~~gIvGia 68 (154)
++++||+|||-.+.. ..+.=|||+
T Consensus 252 ~lqpGDLvff~~~~~~g~~~~HVGIY 277 (313)
T 4fdy_A 252 EAQAGDLIFFHSTYNAGTYVTHVAIY 277 (313)
T ss_dssp TCCTTCEEEESSSSCCSSSCCEEEEE
T ss_pred hCCCCCEEEEecCCCCCCCCcEEEEE
Confidence 589999999964321 235567764
No 21
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A
Probab=38.29 E-value=20 Score=30.74 Aligned_cols=19 Identities=26% Similarity=0.329 Sum_probs=15.7
Q ss_pred HHHHhccCCCEEEEEEeCC
Q 039512 41 KNMKAMRLNELCFFYHSGA 59 (154)
Q Consensus 41 n~lr~Mk~GD~~~fYHS~~ 59 (154)
.+.++.++||.+|||-||-
T Consensus 160 ~L~~~a~pgD~l~fyFSGH 178 (367)
T 4af8_A 160 WLVKDAKPGDVLFFHYSGH 178 (367)
T ss_dssp HHHHTCCTTCEEEEEEESC
T ss_pred HHHHhCCCCCEEEEEEcCC
Confidence 3455688999999999994
No 22
>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A
Probab=38.17 E-value=12 Score=27.89 Aligned_cols=13 Identities=23% Similarity=0.122 Sum_probs=11.1
Q ss_pred hccCCCEEEEEEe
Q 039512 45 AMRLNELCFFYHS 57 (154)
Q Consensus 45 ~Mk~GD~~~fYHS 57 (154)
++++||+|||+..
T Consensus 7 ~~~pGDlv~~~~~ 19 (137)
T 4dpz_X 7 RPRLGDLIEISRF 19 (137)
T ss_dssp CCCTTCEEEEECS
T ss_pred cCCCCCEEEEeCC
Confidence 5899999999843
No 23
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=37.99 E-value=19 Score=30.66 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=15.6
Q ss_pred HHHHhccCCCEEEEEEeCC
Q 039512 41 KNMKAMRLNELCFFYHSGA 59 (154)
Q Consensus 41 n~lr~Mk~GD~~~fYHS~~ 59 (154)
.+.+..++||.+|||-||-
T Consensus 120 ~L~~~a~pgD~llfYFSGH 138 (350)
T 4f6o_A 120 WLVKDAQPNDSLFLHYSGH 138 (350)
T ss_dssp HHHTTCCTTCEEEEEEESC
T ss_pred HHHHhCCCCCEEEEEEcCC
Confidence 3455688999999999994
No 24
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=37.82 E-value=99 Score=21.36 Aligned_cols=62 Identities=18% Similarity=0.097 Sum_probs=42.0
Q ss_pred HHHHhccCCCEEEEEEeCCCCCeEEEEEEEeeecccCCCCCCCeeEEEEEEeeeeCCccChhhHhcCccccCceecc
Q 039512 41 KNMKAMRLNELCFFYHSGARSRRVVGVVSVLREWYEESGDGAGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFR 117 (154)
Q Consensus 41 n~lr~Mk~GD~~~fYHS~~~~~gIvGiaeVv~~aypD~t~~prw~~Vdv~~~~~l~~pv~L~~Lk~~p~L~~m~llr 117 (154)
.-++.+++||+|.+..++ .++-.|+.+-+..-- ..+..|+=| + |..|+ =|.+...++...|+
T Consensus 7 ~~~~~~~vG~rv~V~~~g--~~~~~GtVryvG~~~---~~~G~wvGV--E----lDep~----GKnDGsv~G~rYF~ 68 (95)
T 1lpl_A 7 EAAKNIMVGNRCEVTVGA--QMARRGEVAYVGATK---FKEGVWVGV--K----YDEPV----GKNDGSVAGVRYFD 68 (95)
T ss_dssp HHHHTCCTTCEEEECCTT--SCCEEEEEEEEECCS---SSSSCEEEE--E----ESSSC----SSBSSEETTEECSC
T ss_pred hhhhcCCCCCEEEEccCC--CCceEEEEEEecccC---CCCCEEEEE--E----ccCCC----CccCCEECCEEEeE
Confidence 345679999999998766 256778888887641 124568665 3 33453 36777777777775
No 25
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=34.72 E-value=40 Score=24.15 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=16.4
Q ss_pred HHHHHh--ccCCCEEEEEEeC
Q 039512 40 QKNMKA--MRLNELCFFYHSG 58 (154)
Q Consensus 40 rn~lr~--Mk~GD~~~fYHS~ 58 (154)
.+|.++ ++.||.|+||...
T Consensus 84 ~~FV~~~~L~~GD~~~F~~~~ 104 (130)
T 1wid_A 84 SRFVKEKNLRAGDVVSFSRSN 104 (130)
T ss_dssp HHHHHHTTCCTTCEEEEEECC
T ss_pred HHHHHHcCCCCCCEEEEEEec
Confidence 568886 9999999999875
No 26
>3h41_A NLP/P60 family protein; NLPC/P60 family protein, structural genomics, joint center F structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987}
Probab=33.91 E-value=20 Score=29.32 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=16.6
Q ss_pred HhccCCCEEEEEEeCC-CCCeEEEEE
Q 039512 44 KAMRLNELCFFYHSGA-RSRRVVGVV 68 (154)
Q Consensus 44 r~Mk~GD~~~fYHS~~-~~~gIvGia 68 (154)
.++++||++||-..+. ...+=|||+
T Consensus 248 ~~~~pGDlvff~~~~~~~~~~HVgiy 273 (311)
T 3h41_A 248 EHLQKGDLIFFAHDQGKGSVHHVAMY 273 (311)
T ss_dssp GGCCTTCEEEEEHHHHTSCEEEEEEE
T ss_pred HHCCCCCEEEEecCCCCCCCcEEEEE
Confidence 3699999999975421 134566665
No 27
>4hpe_A Putative cell WALL hydrolase TN916-like,CTN1-ORF1; two domains protein, SLT/lysozyme-like muramidase, NLPC/P60 endopeptidase; 2.38A {Clostridium difficile}
Probab=33.26 E-value=31 Score=28.44 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=15.8
Q ss_pred hccCCCEEEEEEeCC--CCCeEEEEE
Q 039512 45 AMRLNELCFFYHSGA--RSRRVVGVV 68 (154)
Q Consensus 45 ~Mk~GD~~~fYHS~~--~~~gIvGia 68 (154)
++++||+|||-.+.. ....=|||+
T Consensus 248 ~l~pGDLvff~~~~~~~~~~~HVgIy 273 (308)
T 4hpe_A 248 QAKAGDLVFFHSTYNAGSYVTHVGIY 273 (308)
T ss_dssp GCCTTCEEEEECSSSCSSSEEEEEEE
T ss_pred hCCCCCEEEEcCCCCCCCCccEEEEE
Confidence 699999999976431 223456664
No 28
>3ne0_A Resuscitation promoting factor interacting protei; cell WALL, peptidoglycan, hydrolase; 1.00A {Mycobacterium tuberculosis} PDB: 3pbc_A 3s0q_A 2xiv_A*
Probab=31.85 E-value=21 Score=28.38 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=14.3
Q ss_pred HhccCCCEEEEEEeCCCCCeEEEEE
Q 039512 44 KAMRLNELCFFYHSGARSRRVVGVV 68 (154)
Q Consensus 44 r~Mk~GD~~~fYHS~~~~~gIvGia 68 (154)
.++++||++||- ++ ...=|||+
T Consensus 157 ~~lqpGDLvFf~-~g--~~~HVgIY 178 (214)
T 3ne0_A 157 SQMRRGDVIFYG-PN--GSQHVTIY 178 (214)
T ss_dssp GGCCTTCEEEES-GG--GCSEEEEE
T ss_pred hhCCCCCEEEec-CC--CCCEEEEE
Confidence 369999999873 22 23455654
No 29
>3pbi_A Invasion protein; peptidoglycan hydrolase, extracellular, invasion related Pro cell WALL, NLPC-like module, hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 3i86_A
Probab=31.82 E-value=26 Score=27.71 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=13.9
Q ss_pred HhccCCCEEEEEEeCCCCCeEEEEE
Q 039512 44 KAMRLNELCFFYHSGARSRRVVGVV 68 (154)
Q Consensus 44 r~Mk~GD~~~fYHS~~~~~gIvGia 68 (154)
.++++||++||- ++ ...=|||+
T Consensus 157 ~~lqpGDLVff~-~g--~~~HVgIY 178 (214)
T 3pbi_A 157 AEAKRGDLIFYG-PG--GGQHVTLY 178 (214)
T ss_dssp GGCCTTCEEEES-GG--GCSEEEEE
T ss_pred hhCCCCCEEEec-CC--CCCEEEEE
Confidence 369999999873 22 13445554
No 30
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=27.90 E-value=44 Score=22.70 Aligned_cols=20 Identities=10% Similarity=0.067 Sum_probs=16.7
Q ss_pred HHHHHh--ccCCCEEEEEEeCC
Q 039512 40 QKNMKA--MRLNELCFFYHSGA 59 (154)
Q Consensus 40 rn~lr~--Mk~GD~~~fYHS~~ 59 (154)
+.|.++ ++.||.+.|.+.+.
T Consensus 70 ~~Fv~~~~L~~GD~lvF~~~~~ 91 (104)
T 1yel_A 70 ENFVKDNNLEDGKYLQFIYDRD 91 (104)
T ss_dssp HHHHHHHTCCTTCEEEEEECSS
T ss_pred HHHHHHcCCCCCCEEEEEEcCC
Confidence 567775 99999999999873
No 31
>3iez_A RAS GTPase-activating-like protein iqgap2; structural genomics consortium, SGC, alternative splicing, calmodulin-binding, phosphoprotein; 1.50A {Homo sapiens} PDB: 4eza_A
Probab=23.67 E-value=78 Score=22.80 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=34.0
Q ss_pred eecCCCceehhcchhcCCceeecccccHHHHHHHHhccCCCEEEEEEeCCCCCeEEEEE
Q 039512 10 LKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVV 68 (154)
Q Consensus 10 lKsEP~~fsiddl~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~gIvGia 68 (154)
-|--|=.||-.+|...+-...|+|+...|-. .+.|+-|+|.++|+--|.
T Consensus 17 ~k~~syKYSA~kL~eKGVLv~i~g~~~~~~~----------~i~f~IsS~~e~GvF~Ie 65 (114)
T 3iez_A 17 QGAKPVKYTAAKLHEKGVLLDIDDLQTNQFK----------NVTFDIIATEDVGIFDVR 65 (114)
T ss_dssp ---CCEEEEHHHHHHHTSEEEETTCCGGGGG----------GEEEEEEECSSTTEEEEE
T ss_pred eecCceeEcHHHHhhCCeEEEccCCChhhcc----------eEEEEEEeCCCCeEEEEE
Confidence 3666778999999886556779999742211 277888889999987654
No 32
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=23.10 E-value=59 Score=23.56 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=20.9
Q ss_pred HHHhccCCCEEEEEEe--CC-CCCeEEEEEEEeee
Q 039512 42 NMKAMRLNELCFFYHS--GA-RSRRVVGVVSVLRE 73 (154)
Q Consensus 42 ~lr~Mk~GD~~~fYHS--~~-~~~gIvGiaeVv~~ 73 (154)
+-+++++||.++.+.. ++ .+..|+.|-.+.+.
T Consensus 88 ~A~~l~~GD~v~~~~~~~~~~~~~~V~~v~~~~~~ 122 (145)
T 1at0_A 88 FADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSK 122 (145)
T ss_dssp EGGGCCTTCEEEEECTTTCCEEEEEEEEEEEEEEE
T ss_pred EHHHCcCCCEEEEecCCCCCEEEEEEEEEEEEEEe
Confidence 5567999999999976 32 12345555555443
No 33
>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein, PSI-2, PR structure initiative, NEW YORK SGX research center for STRU genomics; 1.80A {Escherichia coli} SCOP: d.3.1.21
Probab=21.95 E-value=33 Score=25.68 Aligned_cols=12 Identities=8% Similarity=0.166 Sum_probs=10.1
Q ss_pred hccCCCEEEEEE
Q 039512 45 AMRLNELCFFYH 56 (154)
Q Consensus 45 ~Mk~GD~~~fYH 56 (154)
++++||++||--
T Consensus 4 ~l~~GDlvf~~~ 15 (186)
T 2if6_A 4 QPQTGDIIFQIS 15 (186)
T ss_dssp CCCTTCEEEECC
T ss_pred cCCCCCEEEEEc
Confidence 589999999854
No 34
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O
Probab=21.85 E-value=35 Score=23.97 Aligned_cols=12 Identities=8% Similarity=0.520 Sum_probs=10.3
Q ss_pred hccCCCEEEEEE
Q 039512 45 AMRLNELCFFYH 56 (154)
Q Consensus 45 ~Mk~GD~~~fYH 56 (154)
++|+||.|+|=.
T Consensus 58 ~VkvGD~Vlf~k 69 (97)
T 1pcq_O 58 DVKVGDIVIFND 69 (97)
T ss_dssp SCCTTCEEEECC
T ss_pred ccCCCCEEEECC
Confidence 599999999954
No 35
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A
Probab=21.58 E-value=35 Score=24.01 Aligned_cols=12 Identities=0% Similarity=0.127 Sum_probs=10.3
Q ss_pred hccCCCEEEEEE
Q 039512 45 AMRLNELCFFYH 56 (154)
Q Consensus 45 ~Mk~GD~~~fYH 56 (154)
++|+||.|+|=.
T Consensus 61 ~VkvGD~Vlf~k 72 (99)
T 1p3h_A 61 DVAEGDTVIYSK 72 (99)
T ss_dssp SCCTTCEEEEEC
T ss_pred ccCCCCEEEECC
Confidence 599999999954
No 36
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A
Probab=21.38 E-value=36 Score=24.05 Aligned_cols=12 Identities=8% Similarity=0.360 Sum_probs=10.1
Q ss_pred hccCCCEEEEEE
Q 039512 45 AMRLNELCFFYH 56 (154)
Q Consensus 45 ~Mk~GD~~~fYH 56 (154)
++|+||.|+|=.
T Consensus 63 ~VkvGD~Vlf~k 74 (100)
T 1we3_O 63 EVKEGDIVVFAK 74 (100)
T ss_dssp SCCTTCEEEECT
T ss_pred ecCCCCEEEECC
Confidence 599999999843
No 37
>1te7_A Hypothetical UPF0267 protein YQFB; alpha + beta, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: b.122.1.7
Probab=21.34 E-value=1.1e+02 Score=20.92 Aligned_cols=26 Identities=4% Similarity=-0.033 Sum_probs=18.2
Q ss_pred ccCCCEEEEEEeCCCCCeEEEEEEEeee
Q 039512 46 MRLNELCFFYHSGARSRRVVGVVSVLRE 73 (154)
Q Consensus 46 Mk~GD~~~fYHS~~~~~gIvGiaeVv~~ 73 (154)
-++||.+.+|-.+ ....+++++|++.
T Consensus 33 ~~~Gd~~~v~~~~--~~~~~~~i~vt~V 58 (103)
T 1te7_A 33 FKTGDVLRVGRFE--DDGYFCTIEVTAT 58 (103)
T ss_dssp CCTTSEEEEEETT--TEEEEEEEEEEEE
T ss_pred CCCCCEEEEEECC--CCcEEEEEEEEEE
Confidence 7899999887544 2345777777655
No 38
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=21.29 E-value=36 Score=24.89 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=17.6
Q ss_pred ccCCCEEEEEEeCCCCCe----EEEEEEEe
Q 039512 46 MRLNELCFFYHSGARSRR----VVGVVSVL 71 (154)
Q Consensus 46 Mk~GD~~~fYHS~~~~~g----IvGiaeVv 71 (154)
+++|+ .|-|.|+|.-+. +-|-...+
T Consensus 75 L~PGe-~f~YtSg~~L~tp~G~M~G~y~m~ 103 (126)
T 1xvs_A 75 IKAND-EYTYSSGTALDTPVGVMQGQYLMI 103 (126)
T ss_dssp ECTTC-EEEEEEEEEESSSEEEEEEEEEEE
T ss_pred CCCCC-ceEEeCCcCcCCCcEEEEEEEEEE
Confidence 89999 999999994333 44444554
No 39
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0
Probab=20.36 E-value=39 Score=23.61 Aligned_cols=12 Identities=0% Similarity=0.293 Sum_probs=10.1
Q ss_pred hccCCCEEEEEE
Q 039512 45 AMRLNELCFFYH 56 (154)
Q Consensus 45 ~Mk~GD~~~fYH 56 (154)
++|+||.|+|=.
T Consensus 58 ~VkvGD~Vl~~k 69 (95)
T 3nx6_A 58 VVKVGDKVIYGQ 69 (95)
T ss_dssp SCCTTCEEEECT
T ss_pred ccCCCCEEEECC
Confidence 699999999843
No 40
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=20.35 E-value=38 Score=25.24 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=18.5
Q ss_pred ccCCCEEEEEEeCCCCC----eEEEEEEEee
Q 039512 46 MRLNELCFFYHSGARSR----RVVGVVSVLR 72 (154)
Q Consensus 46 Mk~GD~~~fYHS~~~~~----gIvGiaeVv~ 72 (154)
+++|+ .|-|.|+|.-+ .+-|-...+.
T Consensus 80 L~PGe-~F~YtSg~~L~Tp~G~M~G~y~m~~ 109 (139)
T 1xq4_A 80 LAPGE-TFEYTSGCPLPTPIGTMRGTYHCVG 109 (139)
T ss_dssp ECTTC-EEEEEEEEEESSSEEEEEEEEEEEE
T ss_pred CCCCC-ceEEcCCcCcCCCceEEEEEEEEEe
Confidence 89999 99999999433 3445555653
Done!