BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039513
         (690 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EZK|A Chain A, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal
           Structures And Cryo-Em Reconstructions
 pdb|3EZK|B Chain B, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal
           Structures And Cryo-Em Reconstructions
 pdb|3EZK|C Chain C, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal
           Structures And Cryo-Em Reconstructions
 pdb|3EZK|D Chain D, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal
           Structures And Cryo-Em Reconstructions
 pdb|3EZK|E Chain E, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal
           Structures And Cryo-Em Reconstructions
          Length = 577

 Score = 33.5 bits (75), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 426 SSPNSVDTIEEFMQVFVDQCAFMDYFKSQWLPHIELWVTGIRSLPVTTPEP 476
           SSP++V     F  +++D+CAF+  F   WL    +  +G RS  + T  P
Sbjct: 239 SSPDAVRG-NSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTP 288


>pdb|2O0H|A Chain A, T4 Gp17 Atpase Domain Mutant Complexed With Atp
 pdb|2O0J|A Chain A, T4 Gp17 Atpase Domain Mutant Complexed With Adp
 pdb|2O0K|A Chain A, T4 Gp17 Atpase Domain Mutant
          Length = 385

 Score = 30.8 bits (68), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 426 SSPNSVDTIEEFMQVFVDQCAFMDYFKSQWLPHIELWVTGIRSLPVTTPEP 476
           SSP++V     F  ++++ CAF+  F   WL    +  +G RS  + T  P
Sbjct: 264 SSPDAVRG-NSFAMIYIEDCAFIPNFHDSWLAIQPVISSGRRSKIIITTTP 313


>pdb|3CPE|A Chain A, Crystal Structure Of T4 Gp17
          Length = 592

 Score = 30.8 bits (68), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 426 SSPNSVDTIEEFMQVFVDQCAFMDYFKSQWLPHIELWVTGIRSLPVTTPEP 476
           SSP++V     F  ++++ CAF+  F   WL    +  +G RS  + T  P
Sbjct: 264 SSPDAVRG-NSFAMIYIEDCAFIPNFHDSWLAIQPVISSGRRSKIIITTTP 313


>pdb|3DWB|A Chain A, Structure Of Human Ece-1 Complexed With Phosphoramidon
          Length = 670

 Score = 30.4 bits (67), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 12/132 (9%)

Query: 334 TSSFVGQFVH----KWIGLLAERIRTKDPRWRLSAFLVDN-------PSFDISTIRENFQ 382
           TSSF+ Q       K++ ++    +T  PRW+      +N       P F  +T  E+ +
Sbjct: 302 TSSFLDQRFQDADEKFMEVMYGTKKTSLPRWKFCVSDTENNLGFALGPMFVKATFAEDSK 361

Query: 383 CRILLCVWHVRRAWIKNLLKKCYNVEVQQEMFKQLSWILYSSRSSPNSVDTIEEFMQVFV 442
                 +  +++A+ ++L    +  E  ++  K+ +  +Y+    PN +   +E  +VF 
Sbjct: 362 SIATEIILEIKKAFEESLSTLKWMDEETRKSAKEKADAIYNMIGYPNFIMDPKELDKVFN 421

Query: 443 DQCAFMD-YFKS 453
           D  A  D YF++
Sbjct: 422 DYTAVPDLYFEN 433


>pdb|2Z01|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
           Synthetase From Geobacillus Kaustophilus
          Length = 348

 Score = 29.6 bits (65), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 12/80 (15%)

Query: 623 VYRQALLSL--LQNPPDDPLVLE-------YA-IVHATRLQQDIKGLEELSNSGLLQPLP 672
           V+ QA LSL  +  P D PL  E       YA ++ + R +  IKG+  ++  GL++ +P
Sbjct: 200 VFEQAKLSLDEIYEPLDVPLGEELLKPTRIYAKLLRSVRERFTIKGMAHITGGGLIENIP 259

Query: 673 LEVNPHMALNHQL--FPRLP 690
             + P +    QL  +P LP
Sbjct: 260 RMLPPGIGARIQLGSWPILP 279


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,834,050
Number of Sequences: 62578
Number of extensions: 913685
Number of successful extensions: 1584
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1582
Number of HSP's gapped (non-prelim): 8
length of query: 690
length of database: 14,973,337
effective HSP length: 106
effective length of query: 584
effective length of database: 8,340,069
effective search space: 4870600296
effective search space used: 4870600296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)