BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039513
         (690 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P24040|NIRS_PSEST Nitrite reductase OS=Pseudomonas stutzeri GN=nirS PE=1 SV=1
          Length = 560

 Score = 37.0 bits (84), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 7/81 (8%)

Query: 164 APCHGILDRDAVGTR-AMYAPRISEDLRQKVMSMLYVGIS-LDNIIQHHIEAVQGHGGPH 221
           A CHG+L + A G     +  +   D ++     L +G   L+NII +  E     GG  
Sbjct: 48  AGCHGVLRKGATGKNLEPHWSKTEADGKKTEGGTLNLGTKRLENIIAYGTE-----GGMV 102

Query: 222 NRDDFLTRNDVRNMERVIRNS 242
           N DD LT+ ++  M R I+++
Sbjct: 103 NYDDILTKEEINMMARYIQHT 123


>sp|Q757M0|MED2_ASHGO Mediator of RNA polymerase II transcription subunit 2 OS=Ashbya
           gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
           NRRL Y-1056) GN=MED2 PE=3 SV=1
          Length = 343

 Score = 34.7 bits (78), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 32/65 (49%)

Query: 171 DRDAVGTRAMYAPRISEDLRQKVMSMLYVGISLDNIIQHHIEAVQGHGGPHNRDDFLTRN 230
           +R+  GT     PRIS +    V     +G+ +D   Q+  ++ Q  G   N DD+LT N
Sbjct: 260 NRNNDGTGGASNPRISSNYNSAVADHESIGLRVDANGQNTKQSGQQSGAGLNPDDYLTLN 319

Query: 231 DVRNM 235
           D  ++
Sbjct: 320 DFNDL 324


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.137    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 268,272,824
Number of Sequences: 539616
Number of extensions: 11347353
Number of successful extensions: 22884
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 22880
Number of HSP's gapped (non-prelim): 17
length of query: 690
length of database: 191,569,459
effective HSP length: 124
effective length of query: 566
effective length of database: 124,657,075
effective search space: 70555904450
effective search space used: 70555904450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 65 (29.6 bits)