Query 039513
Match_columns 690
No_of_seqs 299 out of 577
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 17:57:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039513.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039513hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kks_A Integrase, IN; beta-str 81.1 6.3 0.00022 35.0 9.0 66 297-376 3-68 (152)
2 1cxq_A Avian sarcoma virus int 72.8 18 0.00063 32.7 9.8 70 297-375 12-81 (162)
3 1c0m_A Protein (integrase); HI 72.6 15 0.0005 36.0 9.6 70 297-375 11-80 (238)
4 2ayd_A WRKY transcription fact 71.6 4.8 0.00016 32.7 4.6 29 131-159 43-72 (76)
5 1wj2_A Probable WRKY transcrip 71.0 4.1 0.00014 33.2 4.1 29 131-159 46-75 (78)
6 3hph_A Integrase, IN; protein- 60.0 33 0.0011 32.7 9.1 65 298-376 62-126 (219)
7 3l3u_A POL polyprotein; DNA in 60.0 27 0.00093 31.3 8.1 65 297-375 10-74 (163)
8 1bco_A MUA domain II, bacterio 51.7 43 0.0015 34.3 8.9 72 296-374 16-95 (327)
9 2x78_A Integrase; viral protei 37.0 94 0.0032 28.7 8.1 69 297-375 14-83 (200)
10 3hot_A Transposable element ma 35.0 3.6E+02 0.012 27.0 15.1 57 313-372 190-253 (345)
11 1g2y_A Hepatocyte nuclear fact 34.7 19 0.00065 23.8 1.7 27 184-210 4-30 (32)
12 1tc3_C Protein (TC3 transposas 31.8 62 0.0021 22.0 4.5 27 183-209 4-30 (51)
13 3av9_A Integrase, IN; protein- 26.9 1.7E+02 0.006 26.6 8.0 65 297-375 30-94 (183)
14 1c6v_A Protein (SIV integrase) 24.4 2E+02 0.0068 25.0 7.6 64 297-374 10-73 (164)
15 2l7n_A Talin-1; integrin, bund 23.5 60 0.002 30.3 3.7 41 637-677 6-46 (168)
16 2xv9_A ABA-1A1 repeat UNIT; li 22.7 1.2E+02 0.004 27.2 5.4 34 182-215 18-51 (134)
No 1
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=81.09 E-value=6.3 Score=35.00 Aligned_cols=66 Identities=17% Similarity=0.085 Sum_probs=45.2
Q ss_pred cEEEEeecccccccCCceEEEEEEcCCCCeeEEEEEEeeccchHHHHHHHHHHHHHHhccCCCcceeEEEecCChhHHHH
Q 039513 297 GLMSFHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRWRLSAFLVDNPSFDIST 376 (690)
Q Consensus 297 ~vv~~DsT~~tn~~~~pL~~~~v~d~~g~~~pva~~i~~~et~~~~~~~l~~l~~~~~~~~p~~~P~~~mtD~d~a~~~A 376 (690)
.++.+|.|+.-+ .+.++++|.+-+.+ +++.+. +++.+.+..+|..++... | |+.|.+|......+.
T Consensus 3 ~~w~~D~t~~~~-----~y~~~~iD~~sr~~-~~~~~~-~~~~~~~~~~l~~~~~~~----g---p~~i~sDnG~~f~s~ 68 (152)
T 3kks_A 3 HLWQMDNTHWNK-----TIIWVAVETNSGLV-EAQVIP-EETALQVALCILQLIQRY----T---VLHLHSDNGPCFTAH 68 (152)
T ss_dssp CEEEEEEEEETT-----EEEEEEEETTTCCE-EEEEES-SSCHHHHHHHHHHHHHHS----C---CSEEEECSCHHHHSH
T ss_pred cEEEEeeeeeCC-----EEEEEEEEcCCCcE-EEEEeC-CcCHHHHHHHHHHHHHHh----C---CcEEecCCchHhhHH
Confidence 389999998732 26778889876655 666665 666666655554443332 3 999999998877653
No 2
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=72.81 E-value=18 Score=32.65 Aligned_cols=70 Identities=14% Similarity=-0.013 Sum_probs=48.1
Q ss_pred cEEEEeecccccccCCceEEEEEEcCCCCeeEEEEEEeeccchHHHHHHHHHHHHHHhccCCCcceeEEEecCChhHHH
Q 039513 297 GLMSFHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRWRLSAFLVDNPSFDIS 375 (690)
Q Consensus 297 ~vv~~DsT~~tn~~~~pL~~~~v~d~~g~~~pva~~i~~~et~~~~~~~l~~l~~~~~~~~p~~~P~~~mtD~d~a~~~ 375 (690)
.++.+|.|+.....+. .|.++++|.+-+. .+++.+. +.+.+.+..+|..++...+ .|..|.+|......+
T Consensus 12 ~~~~~D~~~~~~~~g~-~yl~~~iD~~Sr~-i~~~~~~-~~~~~~v~~~l~~~~~~~g------~p~~i~sDnG~~f~s 81 (162)
T 1cxq_A 12 QIWQTDFTLEPRMAPR-SWLAVTVDTASSA-IVVTQHG-RVTSVAAQHHWATAIAVLG------RPKAIKTDNGSCFTS 81 (162)
T ss_dssp CEEEEEEEECGGGTTS-CEEEEEEETTTCC-EEEEEES-SCCHHHHHHHHHHHHHHHC------CCSEEECCSCHHHHS
T ss_pred CEEEeeeeecccCCCC-EEEEEEEEcCCCe-EEEEECC-CccHHHHHHHHHHHHHHHC------CCeEEEeCCchhhhh
Confidence 4899999986544443 5667888887554 4677776 6777766666655554432 388999999887654
No 3
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=72.58 E-value=15 Score=36.00 Aligned_cols=70 Identities=14% Similarity=-0.012 Sum_probs=48.6
Q ss_pred cEEEEeecccccccCCceEEEEEEcCCCCeeEEEEEEeeccchHHHHHHHHHHHHHHhccCCCcceeEEEecCChhHHH
Q 039513 297 GLMSFHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRWRLSAFLVDNPSFDIS 375 (690)
Q Consensus 297 ~vv~~DsT~~tn~~~~pL~~~~v~d~~g~~~pva~~i~~~et~~~~~~~l~~l~~~~~~~~p~~~P~~~mtD~d~a~~~ 375 (690)
.++.+|.|+.....+. .+.++++|.+-+ ..+|+.+. +.+.+.+..+|..++...+ .|..|.||......+
T Consensus 11 ~~w~~D~~~~~~~~g~-~yl~~~iD~~Sr-~i~~~~~~-~~~~~~v~~~l~~~~~~~g------~p~~i~sDnG~~f~s 80 (238)
T 1c0m_A 11 QIWQTDFTLEPRMAPR-SWLAVTVDTASS-AIVVTQHG-RVTSVAVQHHWATAIAVLG------RPKAIKTDNGSCFTS 80 (238)
T ss_dssp SEEEEEEEECGGGCSS-CEEEEEEETTTC-CEEEEEES-SCCHHHHHHHHHHHHHHHC------CCSEEEECSCHHHHS
T ss_pred CEEEEeeccccccCCC-EEEEEEEECCCC-CEEEEEcc-CCCHHHHHHHHHHHHHHhC------CCcEEEECCCCcccc
Confidence 3899999986544443 566777887654 45677776 7787777666665555442 388999999876543
No 4
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=71.62 E-value=4.8 Score=32.67 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=24.2
Q ss_pred cCcceEEEEEEeeeCCcEEEEEE-eccCCC
Q 039513 131 RGCLCHFTVKRLYTRPLLALIIY-NQRKHV 159 (690)
Q Consensus 131 ~gC~a~~~vk~~~~~~~~~v~~~-~eHnH~ 159 (690)
.||+|+=.|.+...++.+.++.| .+|||.
T Consensus 43 ~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~ 72 (76)
T 2ayd_A 43 PGCPVKKHVERSSHDTKLLITTYEGKHDHD 72 (76)
T ss_dssp TTCCCEEEEEECSSSTTEEEEEEESCCSSC
T ss_pred CCCCceeeEEEECCCCCEEEEEEccCcCCC
Confidence 59999999988667888777777 899994
No 5
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=70.96 E-value=4.1 Score=33.20 Aligned_cols=29 Identities=28% Similarity=0.427 Sum_probs=24.2
Q ss_pred cCcceEEEEEEeeeCCcEEEEEE-eccCCC
Q 039513 131 RGCLCHFTVKRLYTRPLLALIIY-NQRKHV 159 (690)
Q Consensus 131 ~gC~a~~~vk~~~~~~~~~v~~~-~eHnH~ 159 (690)
.||+|+=.|.+...++.+.++.| .+|||.
T Consensus 46 ~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~ 75 (78)
T 1wj2_A 46 PGCGVRKHVERAATDPKAVVTTYEGKHNHD 75 (78)
T ss_dssp SSCEEEEEEEEETTTTSEEEEEEESCCSSC
T ss_pred CCCCcEeeEEEEcCCCCEEEEEEeeEcCCC
Confidence 69999999988767888777777 899994
No 6
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=60.01 E-value=33 Score=32.65 Aligned_cols=65 Identities=14% Similarity=-0.015 Sum_probs=44.2
Q ss_pred EEEEeecccccccCCceEEEEEEcCCCCeeEEEEEEeeccchHHHHHHHHHHHHHHhccCCCcceeEEEecCChhHHHH
Q 039513 298 LMSFHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRWRLSAFLVDNPSFDIST 376 (690)
Q Consensus 298 vv~~DsT~~tn~~~~pL~~~~v~d~~g~~~pva~~i~~~et~~~~~~~l~~l~~~~~~~~p~~~P~~~mtD~d~a~~~A 376 (690)
++.+|.|+..++ +.++++|.+-+.+ .++.+ .+.+...+..+|..++... | |+.|.||......++
T Consensus 62 ~w~~D~t~~~~~-----y~~~~iD~~Sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~----g---p~~i~sDnG~~F~s~ 126 (219)
T 3hph_A 62 HWQVDYTHYEDK-----IILVWVETNSGLI-YAERV-KGETGQEFRVQTMKWYAMF----A---PKSLQSDNGPAFVAE 126 (219)
T ss_dssp EEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SCCCHHHHHHHHHHHHHHH----C---CCEEEECCCHHHHSH
T ss_pred eEEEEEecCCCE-----EEEEEEeCCCCcE-EEEEe-CCCCHHHHHHHHHHHHHHh----C---CcEEEeCCCchhhhH
Confidence 899999975432 6788889877666 66655 4556665555554444433 2 899999999877644
No 7
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=59.95 E-value=27 Score=31.34 Aligned_cols=65 Identities=25% Similarity=0.186 Sum_probs=43.9
Q ss_pred cEEEEeecccccccCCceEEEEEEcCCCCeeEEEEEEeeccchHHHHHHHHHHHHHHhccCCCcceeEEEecCChhHHH
Q 039513 297 GLMSFHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRWRLSAFLVDNPSFDIS 375 (690)
Q Consensus 297 ~vv~~DsT~~tn~~~~pL~~~~v~d~~g~~~pva~~i~~~et~~~~~~~l~~l~~~~~~~~p~~~P~~~mtD~d~a~~~ 375 (690)
+++.+|.|+..+ .|.++++|.+.+.+ +++.+. +++.+....++..++... | |+.|.+|......+
T Consensus 10 ~~w~~D~t~~~g-----~y~~~~iD~~sr~~-~~~~~~-~~~~~~~~~~l~~~~~~~----~---~~~i~sD~G~~f~s 74 (163)
T 3l3u_A 10 GIWQLDCTHLEG-----KVILVAVHVASGYI-EAEVIP-AETGQETAYFLLKLAGRW----P---VKTVHTDNGSNFTS 74 (163)
T ss_dssp TEEEEEEEEETT-----EEEEEEEETTTCCE-EEEEES-SCCHHHHHHHHHHHHHHS----C---CCEEEECCCGGGGS
T ss_pred CEEEEEecccCC-----cEEEEEEecCCCcE-EEEEeC-CCcHHHHHHHHHHHHHHc----C---CcEEeecChHhhhh
Confidence 489999999643 36788889876655 666664 456666555554444332 2 47899999876543
No 8
>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A
Probab=51.71 E-value=43 Score=34.35 Aligned_cols=72 Identities=10% Similarity=-0.111 Sum_probs=48.8
Q ss_pred CcEEEEeecccccc----cCC--ceEEEEEEcCCCCeeEEEEEEeeccchHHHHHHHHHHHHHHhccCCCccee--EEEe
Q 039513 296 NGLMSFHSTFGSKK----LKY--PLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRWRLS--AFLV 367 (690)
Q Consensus 296 ~~vv~~DsT~~tn~----~~~--pL~~~~v~d~~g~~~pva~~i~~~et~~~~~~~l~~l~~~~~~~~p~~~P~--~~mt 367 (690)
..++.+|.|+---. .+- ..+..+++|.+-+ ..+||.+..+++.+.+...|+..+...+ .|. .|.+
T Consensus 16 ~~~w~~D~t~~d~~~~~~~g~~~r~~l~~~iD~~SR-~ivg~~~~~~~~~~~v~~aL~~a~~~~G------~P~~~~i~s 88 (327)
T 1bco_A 16 MQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTR-KILGWRCDVSENIDSIRLSFMDVVTRYG------IPEDFHITI 88 (327)
T ss_dssp TTEEEEEEEECSBCEECTTSCEECCEEEEEEETTTC-CEEEEEEESSCCHHHHHHHHHHHHHHHC------EESSCEEEC
T ss_pred CcEEEecCCEEEEEEECCCCccceeEEEEEEECCCC-cEEEEEEECCCCHHHHHHHHHHHHHhcC------CCCCcEEEe
Confidence 34999999963221 132 3466777887644 4589999988988887766665544432 588 9999
Q ss_pred cCChhHH
Q 039513 368 DNPSFDI 374 (690)
Q Consensus 368 D~d~a~~ 374 (690)
|.-....
T Consensus 89 DnG~~f~ 95 (327)
T 1bco_A 89 DNTRGAA 95 (327)
T ss_dssp CCTTSTT
T ss_pred eCchhhc
Confidence 9976543
No 9
>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Probab=36.98 E-value=94 Score=28.67 Aligned_cols=69 Identities=12% Similarity=-0.104 Sum_probs=43.3
Q ss_pred cEEEEee-cccccccCCceEEEEEEcCCCCeeEEEEEEeeccchHHHHHHHHHHHHHHhccCCCcceeEEEecCChhHHH
Q 039513 297 GLMSFHS-TFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRWRLSAFLVDNPSFDIS 375 (690)
Q Consensus 297 ~vv~~Ds-T~~tn~~~~pL~~~~v~d~~g~~~pva~~i~~~et~~~~~~~l~~l~~~~~~~~p~~~P~~~mtD~d~a~~~ 375 (690)
.++.+|. ++-....+ ..+.++++|.+-+. .+++.+ .+.+.+.+...|..+ +. . -.|+.|.+|......+
T Consensus 14 ~~~~~D~~~~~~~~~g-~~y~~~~iD~~Sr~-~~~~~~-~~~~~~~~~~~l~~~---~~-~---g~p~~i~sDnG~~f~s 83 (200)
T 2x78_A 14 DKFFIDYIGPLPPSQG-YLYVLVVVDGMTGF-TWLYPT-KAPSTSATVKSLNVL---TS-I---AIPRVIHSDQGAAFTS 83 (200)
T ss_dssp SEEEEEEECCCSCBTT-BCEEEEEEETTTCC-EEEEEE-SSSCHHHHHHHHHHH---TT-T---CCCSEEEECSCHHHHS
T ss_pred cEEEEEEeCCCccCCC-CeEEEEEEeCCCCc-EEEEEC-CCCCHHHHHHHHHHH---HH-h---CCCcEEEecCCcceeh
Confidence 4899998 54333333 56778888886554 466666 556665544444322 21 1 2589999999887654
No 10
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=35.02 E-value=3.6e+02 Score=27.03 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=36.9
Q ss_pred ceEEEEEEcCCCCeeEEEEEEee---ccchHHHHHHHHHHHHHHhccCCCc----ceeEEEecCChh
Q 039513 313 PLSTLLVFDSSHNAIPVAWIITS---SFVGQFVHKWIGLLAERIRTKDPRW----RLSAFLVDNPSF 372 (690)
Q Consensus 313 pL~~~~v~d~~g~~~pva~~i~~---~et~~~~~~~l~~l~~~~~~~~p~~----~P~~~mtD~d~a 372 (690)
.++...+.+..| .+++.++. .-+.+.|..+|..+...+....|.. .+..|+.|.+..
T Consensus 190 ~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~~ 253 (345)
T 3hot_A 190 KTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAPS 253 (345)
T ss_dssp EEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCTT
T ss_pred cEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCCc
Confidence 445555566555 46666655 5677888888877777766555543 255788998654
No 11
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=34.67 E-value=19 Score=23.80 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 039513 184 RISEDLRQKVMSMLYVGISLDNIIQHH 210 (690)
Q Consensus 184 ~is~~~r~~i~~ll~~Gi~~~~Il~~~ 210 (690)
++|.-+++.+.+++.+|++.+..++.+
T Consensus 4 kLs~LQ~eLL~aLL~SGlsKe~LiqaL 30 (32)
T 1g2y_A 4 KLSQLQTEMLAALLESGLSKEALIQAL 30 (32)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHHHHh
Confidence 567888999999999999998877654
No 12
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=31.80 E-value=62 Score=22.04 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 039513 183 PRISEDLRQKVMSMLYVGISLDNIIQH 209 (690)
Q Consensus 183 ~~is~~~r~~i~~ll~~Gi~~~~Il~~ 209 (690)
+.++++++..|..+...|++..+|-..
T Consensus 4 ~~l~~~~~~~i~~~~~~g~s~~~IA~~ 30 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLNVSLHEMSRK 30 (51)
T ss_dssp CCCCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHH
Confidence 357899999999999999998888654
No 13
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=26.91 E-value=1.7e+02 Score=26.56 Aligned_cols=65 Identities=25% Similarity=0.194 Sum_probs=39.4
Q ss_pred cEEEEeecccccccCCceEEEEEEcCCCCeeEEEEEEeeccchHHHHHHHHHHHHHHhccCCCcceeEEEecCChhHHH
Q 039513 297 GLMSFHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRWRLSAFLVDNPSFDIS 375 (690)
Q Consensus 297 ~vv~~DsT~~tn~~~~pL~~~~v~d~~g~~~pva~~i~~~et~~~~~~~l~~l~~~~~~~~p~~~P~~~mtD~d~a~~~ 375 (690)
.++.+|.|+... . +.++++|.+-+.+ +++.+.+ .+......++..+.... | ++.|.+|......+
T Consensus 30 ~~w~~D~~~~~g----~-~~l~~vD~~Sr~~-~~~~~~~-~~~~~~~~~~~~~~~~~----~---~~~i~sDnG~ef~s 94 (183)
T 3av9_A 30 GIWQLDCTHLEG----K-VILVAVHVASGYI-EAEVIPA-ETGQETAYFLLKLAGRW----P---VKTVHTDNGSNFTS 94 (183)
T ss_dssp TEEEEEEEEETT----E-EEEEEEETTTTEE-EEEEESS-CCHHHHHHHHHHHHHHS----C---CCEEECSSHHHHHC
T ss_pred CEEEEeccccCC----c-EEEEEEECCCCCE-EEEEeCC-ccchHHHHHHHHHHHHc----C---CcEEEecCchhcch
Confidence 489999998722 2 2345558766555 7776654 45544444443333222 2 48999999877654
No 14
>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2
Probab=24.36 E-value=2e+02 Score=25.05 Aligned_cols=64 Identities=11% Similarity=0.058 Sum_probs=38.5
Q ss_pred cEEEEeecccccccCCceEEEEEEcCCCCeeEEEEEEeeccchHHHHHHHHHHHHHHhccCCCcceeEEEecCChhHH
Q 039513 297 GLMSFHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRWRLSAFLVDNPSFDI 374 (690)
Q Consensus 297 ~vv~~DsT~~tn~~~~pL~~~~v~d~~g~~~pva~~i~~~et~~~~~~~l~~l~~~~~~~~p~~~P~~~mtD~d~a~~ 374 (690)
+++.+|.|+. + + . +.++++|.+-+ ..+++.+.+ .+.+.+..++ .+.+. .. .|+.|.+|......
T Consensus 10 ~~w~~D~~~~-~--g-~-~~l~~iD~~Sr-~~~~~~~~~-~~~~~~~~~~---~~~~~-~~---~~~~i~sDnG~~f~ 73 (164)
T 1c6v_A 10 GTWQMDCTHL-E--G-K-IVIVAVHVASG-FIEAEVIPQ-ETGRQTALFL---LKLAG-RW---PITHLHTDNGANFA 73 (164)
T ss_dssp TEEEEEEEEE-T--T-E-EEEEEECTTSC-CEEEEECSS-CSHHHHHHHH---HHHHT-TS---CCCEEECCCCSSTT
T ss_pred CEEEEeeccc-C--C-E-EEEEEEEccCC-EEEEEEcCC-CchHHHHHHH---HHHHH-hc---CCCEEEeCCchhhh
Confidence 3899999998 2 2 2 44555887654 446776654 5554443333 33332 22 37899999976653
No 15
>2l7n_A Talin-1; integrin, bundle, focal adhesion, structural protein; NMR {Mus musculus}
Probab=23.55 E-value=60 Score=30.33 Aligned_cols=41 Identities=27% Similarity=0.503 Sum_probs=37.4
Q ss_pred CCchhhhHHHHHHHHHHHHHhHhHhhccCCccccCCCcccc
Q 039513 637 DDPLVLEYAIVHATRLQQDIKGLEELSNSGLLQPLPLEVNP 677 (690)
Q Consensus 637 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (690)
-.++.+|+|...+.++.++|.........+.+.|||-++..
T Consensus 6 Cg~~eld~Ale~V~~L~~eL~~~~~aa~~g~L~plPget~e 46 (168)
T 2l7n_A 6 TGPLEMDSALSVVQNLEKDLQEIKAAARDGKLKPLPGETME 46 (168)
T ss_dssp CSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCTTSCHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCcHH
Confidence 35678999999999999999999999999999999998764
No 16
>2xv9_A ABA-1A1 repeat UNIT; lipid binding protein, fatty acid binding, retinol binding,; NMR {Ascaris suum}
Probab=22.71 E-value=1.2e+02 Score=27.22 Aligned_cols=34 Identities=9% Similarity=0.150 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 039513 182 APRISEDLRQKVMSMLYVGISLDNIIQHHIEAVQ 215 (690)
Q Consensus 182 ~~~is~~~r~~i~~ll~~Gi~~~~Il~~~~~~~~ 215 (690)
..=|+++++..|..|...|-+...|+..+.+.++
T Consensus 18 LsWLt~eQk~EI~kMk~~gksk~~v~~KI~efye 51 (134)
T 2xv9_A 18 LKWLSQEQKDELLKMKKDGKAKKELEAKILHYYD 51 (134)
T ss_dssp TTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3457899999999999999999999999888764
Done!