BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039518
(617 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
Length = 260
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPS 290
+VLD+G G +S FL + + P + ++ A E+G+ ++ A + LP+PS
Sbjct: 57 RVLDLGGGTGKWSLFLQERGFEVVLVDP---SKEXLEVAREKGVKNVVEA-KAEDLPFPS 112
Query: 291 SSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAY 334
+FE V + + N E+ RVL P+G + + Y
Sbjct: 113 GAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFY 156
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALST--KQLPY 288
+VLDVGCG + L + + D E IQ ERG G +S + LP+
Sbjct: 56 EVLDVGCGDGYGTYKLSRTGYKAVGV---DISEVXIQKGKERGEGPDLSFIKGDLSSLPF 112
Query: 289 PSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYS--APPAYRKDKDYPLIWDK 346
+ FE + ++W L E+ RVL+ +GY + P A ++ YP ++ K
Sbjct: 113 ENEQFEAIXAINS-LEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGK 171
Query: 347 LVNLTTAMCWKL 358
V T W+
Sbjct: 172 DVVCNTXXPWEF 183
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 231 QVLDVGCGVASFSAFLLPLDIQTMSF-APKDGHENQIQFALERGI-GAMISALSTKQLPY 288
+VLD+G G + P + + A K+ E FA E+G+ + + LP+
Sbjct: 24 RVLDIGAGAGHTALAFSPYVQECIGVDATKEXVEVASSFAQEKGVENVRFQQGTAESLPF 83
Query: 289 PSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFV 327
P SF+++ C R ++ ++EV RVL+ +G F+
Sbjct: 84 PDDSFDIITC-RYAAHHFSDVRKAVREVARVLKQDGRFL 121
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 231 QVLDVGCGVASFSAFLLPLDIQTMSF-APKDGHENQIQFALERGIGAMISALSTKQLPYP 289
+VLD+ CGV FS L + + +D ++A R ++L +
Sbjct: 41 KVLDLACGVGGFSFLLEDYGFEVVGVDISEDXIRKAREYAKSRESNVEFIVGDARKLSFE 100
Query: 290 SSSFEMVHCSRCRVDWHAND-GILLKEVDRVLRPNGYFV 327
+F+ V V + + + KEV RVL+P+G F+
Sbjct: 101 DKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFI 139
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 17/114 (14%)
Query: 224 LRSAGVFQVLDVGCGVASF--------SAFLLPLDIQTMSFAPKDGHENQIQFALERGIG 275
L G +++D+GCG F ++++L LD+ A ER
Sbjct: 39 LPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKXLARARAAGPDTGITYERA-- 96
Query: 276 AMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYS 329
+L P SF++ + S + + + L + V + L P G+FV+S
Sbjct: 97 ------DLDKLHLPQDSFDLAYSSLA-LHYVEDVARLFRTVHQALSPGGHFVFS 143
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 46/111 (41%), Gaps = 12/111 (10%)
Query: 231 QVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQF-ALERGIGAMI--SALSTKQL 286
+VLDVGCG+ + L D++ + NQ A G+ + S L
Sbjct: 64 RVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAXDL 123
Query: 287 PYPSSSFEMVHCSRCRVDWHAND-GILLKEVDRVLRPNGY-----FVYSAP 331
P+ +SF+ V H D G L+E RVLRP G FV AP
Sbjct: 124 PFEDASFDAVWALESL--HHXPDRGRALREXARVLRPGGTVAIADFVLLAP 172
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 311 ILLKEVDRVLRPNGYFVYSAPP-----------AYRKDKDYPLIWDKLV--NLTTAMCWK 357
+L+KE D V+ NG F++S P + + +D + + + NL T+ +
Sbjct: 124 VLIKEEDAVIYKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTR 183
Query: 358 LIARKIQTAIWIKEENQSC 376
LI R+ + W E N C
Sbjct: 184 LIVRRCEAQKWGPECNHLC 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,700,562
Number of Sequences: 62578
Number of extensions: 811840
Number of successful extensions: 1546
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1543
Number of HSP's gapped (non-prelim): 8
length of query: 617
length of database: 14,973,337
effective HSP length: 105
effective length of query: 512
effective length of database: 8,402,647
effective search space: 4302155264
effective search space used: 4302155264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)