Query 039518
Match_columns 617
No_of_seqs 685 out of 3403
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 10:30:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039518.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039518hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 4E-154 8E-159 1236.8 30.6 495 107-611 1-506 (506)
2 PF03141 Methyltransf_29: Puta 100.0 5.9E-35 1.3E-39 315.4 8.6 196 401-613 32-262 (506)
3 PLN02336 phosphoethanolamine N 99.8 2E-18 4.3E-23 191.7 17.5 306 228-572 37-369 (475)
4 COG2226 UbiE Methylase involve 99.7 2.3E-16 5.1E-21 159.8 10.5 102 227-330 50-156 (238)
5 PF01209 Ubie_methyltran: ubiE 99.6 9.2E-16 2E-20 155.7 10.9 104 226-330 45-153 (233)
6 PLN02396 hexaprenyldihydroxybe 99.6 4.8E-15 1E-19 157.1 14.5 134 227-364 130-290 (322)
7 PLN02233 ubiquinone biosynthes 99.6 5.1E-15 1.1E-19 152.6 14.4 104 226-331 71-183 (261)
8 PF08241 Methyltransf_11: Meth 99.6 1.5E-15 3.1E-20 129.5 8.5 93 233-328 1-95 (95)
9 PLN02244 tocopherol O-methyltr 99.5 8.4E-14 1.8E-18 148.9 15.8 102 227-331 117-224 (340)
10 PTZ00098 phosphoethanolamine N 99.5 1.2E-13 2.6E-18 142.6 15.1 142 225-368 49-207 (263)
11 COG2227 UbiG 2-polyprenyl-3-me 99.5 1.6E-14 3.4E-19 145.0 7.3 103 228-334 59-165 (243)
12 PF13489 Methyltransf_23: Meth 99.5 1.4E-13 2.9E-18 129.1 10.5 124 228-360 22-160 (161)
13 TIGR02752 MenG_heptapren 2-hep 99.5 4.3E-13 9.2E-18 134.8 14.2 106 225-331 42-152 (231)
14 PRK14103 trans-aconitate 2-met 99.5 4.2E-13 9.2E-18 137.4 14.4 100 227-331 28-127 (255)
15 PRK10258 biotin biosynthesis p 99.5 2.1E-13 4.6E-18 139.0 11.9 101 228-332 42-142 (251)
16 PRK11036 putative S-adenosyl-L 99.5 5.9E-13 1.3E-17 136.5 13.4 132 228-363 44-207 (255)
17 PLN02336 phosphoethanolamine N 99.4 1E-12 2.2E-17 146.2 15.5 133 226-361 264-412 (475)
18 PRK11207 tellurite resistance 99.4 1.5E-12 3.3E-17 128.7 14.0 138 228-371 30-178 (197)
19 PLN02490 MPBQ/MSBQ methyltrans 99.4 9.8E-13 2.1E-17 140.3 13.0 134 228-363 113-256 (340)
20 PF12847 Methyltransf_18: Meth 99.4 7.5E-13 1.6E-17 117.4 10.0 99 228-330 1-111 (112)
21 PRK15068 tRNA mo(5)U34 methylt 99.4 1.9E-12 4.1E-17 137.5 14.3 130 228-361 122-272 (322)
22 PRK01683 trans-aconitate 2-met 99.4 2.1E-12 4.6E-17 132.1 13.1 103 226-331 29-131 (258)
23 PRK08317 hypothetical protein; 99.4 3.7E-12 8.1E-17 126.8 14.4 106 226-332 17-126 (241)
24 TIGR00477 tehB tellurite resis 99.4 3.1E-12 6.8E-17 126.3 13.6 138 229-372 31-178 (195)
25 TIGR00452 methyltransferase, p 99.4 3.9E-12 8.6E-17 134.5 14.6 131 228-362 121-272 (314)
26 PRK11873 arsM arsenite S-adeno 99.4 4.9E-12 1.1E-16 130.6 14.6 134 226-361 75-228 (272)
27 TIGR00740 methyltransferase, p 99.4 5.6E-12 1.2E-16 127.8 13.8 102 228-331 53-162 (239)
28 PRK05785 hypothetical protein; 99.4 2.6E-12 5.6E-17 129.9 10.9 90 229-324 52-141 (226)
29 PF13847 Methyltransf_31: Meth 99.4 2.2E-12 4.7E-17 121.8 9.7 102 228-332 3-112 (152)
30 PRK15451 tRNA cmo(5)U34 methyl 99.4 4E-12 8.7E-17 129.9 12.0 103 227-331 55-165 (247)
31 COG4106 Tam Trans-aconitate me 99.4 4E-12 8.7E-17 125.3 11.3 201 227-462 29-231 (257)
32 smart00138 MeTrc Methyltransfe 99.4 3.7E-12 7.9E-17 131.8 11.6 132 200-331 71-243 (264)
33 KOG1540 Ubiquinone biosynthesi 99.4 3.3E-12 7.3E-17 128.6 10.9 107 223-330 95-214 (296)
34 PRK11088 rrmA 23S rRNA methylt 99.3 3.8E-12 8.3E-17 131.8 10.9 96 229-332 86-183 (272)
35 TIGR02072 BioC biotin biosynth 99.3 7.5E-12 1.6E-16 124.9 12.1 101 229-331 35-136 (240)
36 smart00828 PKS_MT Methyltransf 99.3 1.7E-11 3.7E-16 122.6 13.8 129 231-362 2-143 (224)
37 PF13649 Methyltransf_25: Meth 99.3 2.1E-12 4.6E-17 113.5 5.5 93 232-324 1-101 (101)
38 KOG1270 Methyltransferases [Co 99.3 3.4E-12 7.3E-17 129.3 7.3 97 229-332 90-197 (282)
39 PF02353 CMAS: Mycolic acid cy 99.3 1.4E-11 3E-16 128.0 12.1 105 220-330 54-166 (273)
40 PRK12335 tellurite resistance 99.3 2.1E-11 4.5E-16 127.4 13.2 97 230-330 122-223 (287)
41 PRK00107 gidB 16S rRNA methylt 99.3 3.8E-11 8.2E-16 118.2 14.0 118 228-361 45-167 (187)
42 PRK01544 bifunctional N5-gluta 99.3 6.3E-11 1.4E-15 133.1 17.2 291 229-584 139-475 (506)
43 PRK00216 ubiE ubiquinone/menaq 99.3 9E-11 1.9E-15 117.4 15.7 103 228-331 51-159 (239)
44 PF07021 MetW: Methionine bios 99.3 2.3E-11 5E-16 119.0 10.8 125 227-360 12-164 (193)
45 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 8E-11 1.7E-15 116.6 14.7 103 228-331 39-144 (223)
46 TIGR03587 Pse_Me-ase pseudamin 99.2 3.7E-11 8E-16 119.8 10.9 99 228-330 43-142 (204)
47 KOG4300 Predicted methyltransf 99.2 5.4E-11 1.2E-15 116.6 11.3 122 231-360 79-207 (252)
48 PRK06922 hypothetical protein; 99.2 3.4E-11 7.3E-16 136.4 10.6 103 228-331 418-538 (677)
49 PF08242 Methyltransf_12: Meth 99.2 2.8E-12 6.2E-17 111.9 1.1 92 233-326 1-99 (99)
50 COG2230 Cfa Cyclopropane fatty 99.2 1.9E-10 4E-15 119.2 14.1 105 221-331 65-177 (283)
51 TIGR02021 BchM-ChlM magnesium 99.2 2.2E-10 4.9E-15 114.5 13.5 130 227-362 54-205 (219)
52 PF03848 TehB: Tellurite resis 99.2 4.3E-10 9.3E-15 110.9 13.8 99 228-330 30-133 (192)
53 PRK00121 trmB tRNA (guanine-N( 99.2 1.4E-10 2.9E-15 115.3 10.3 122 228-359 40-177 (202)
54 TIGR00138 gidB 16S rRNA methyl 99.2 3.4E-10 7.5E-15 110.8 12.9 120 229-361 43-167 (181)
55 TIGR03840 TMPT_Se_Te thiopurin 99.2 2E-10 4.3E-15 115.3 11.4 100 228-330 34-152 (213)
56 TIGR00537 hemK_rel_arch HemK-r 99.2 6.9E-10 1.5E-14 107.7 14.8 121 229-362 20-164 (179)
57 PRK11705 cyclopropane fatty ac 99.1 1.6E-10 3.5E-15 125.6 10.8 102 224-331 163-268 (383)
58 TIGR02081 metW methionine bios 99.1 7.4E-10 1.6E-14 109.0 13.6 126 228-361 13-165 (194)
59 PRK05134 bifunctional 3-demeth 99.1 8.3E-10 1.8E-14 111.2 14.1 131 228-362 48-204 (233)
60 TIGR01983 UbiG ubiquinone bios 99.1 1.1E-09 2.4E-14 109.3 14.2 132 228-363 45-203 (224)
61 PRK06202 hypothetical protein; 99.1 4.4E-10 9.6E-15 113.5 11.3 101 227-330 59-166 (232)
62 PRK04266 fibrillarin; Provisio 99.1 1.5E-09 3.3E-14 109.9 14.6 133 224-362 68-209 (226)
63 COG4976 Predicted methyltransf 99.1 7.2E-11 1.6E-15 117.4 4.8 135 226-364 123-266 (287)
64 PLN02585 magnesium protoporphy 99.1 2.2E-09 4.8E-14 113.8 16.4 125 228-360 144-296 (315)
65 TIGR02716 C20_methyl_CrtF C-20 99.1 1.3E-09 2.9E-14 114.6 14.0 102 226-331 147-255 (306)
66 TIGR00091 tRNA (guanine-N(7)-) 99.1 7.8E-10 1.7E-14 109.1 11.0 121 230-360 18-155 (194)
67 PF08003 Methyltransf_9: Prote 99.1 9.8E-10 2.1E-14 114.3 11.7 129 228-360 115-264 (315)
68 TIGR02469 CbiT precorrin-6Y C5 99.1 1.2E-09 2.5E-14 98.0 10.8 99 227-330 18-122 (124)
69 PF05175 MTS: Methyltransferas 99.0 2.2E-10 4.9E-15 110.6 6.1 101 229-331 32-141 (170)
70 PF05401 NodS: Nodulation prot 99.0 7.3E-10 1.6E-14 108.9 9.5 98 230-331 45-147 (201)
71 PRK13255 thiopurine S-methyltr 99.0 1.3E-09 2.7E-14 109.9 11.5 131 228-362 37-189 (218)
72 PRK07580 Mg-protoporphyrin IX 99.0 2.8E-09 6.2E-14 106.6 13.8 128 227-361 62-212 (230)
73 PRK08287 cobalt-precorrin-6Y C 99.0 2.9E-09 6.3E-14 104.1 13.3 120 227-361 30-154 (187)
74 PRK09489 rsmC 16S ribosomal RN 99.0 6.9E-10 1.5E-14 118.9 9.5 99 230-331 198-304 (342)
75 PRK14967 putative methyltransf 99.0 4.4E-09 9.5E-14 105.9 14.6 123 227-360 35-181 (223)
76 PRK00517 prmA ribosomal protei 99.0 8.2E-09 1.8E-13 105.8 16.4 120 228-363 119-238 (250)
77 TIGR00406 prmA ribosomal prote 99.0 3.2E-09 7E-14 111.1 13.6 117 228-361 159-281 (288)
78 KOG3010 Methyltransferase [Gen 99.0 3.7E-10 8.1E-15 113.3 5.8 116 231-357 36-158 (261)
79 PRK11188 rrmJ 23S rRNA methylt 99.0 1.9E-09 4E-14 107.9 10.6 97 227-330 50-165 (209)
80 PRK13944 protein-L-isoaspartat 99.0 2E-09 4.4E-14 107.1 10.6 97 227-330 71-173 (205)
81 PRK14968 putative methyltransf 99.0 1.1E-08 2.5E-13 98.7 15.2 122 228-361 23-171 (188)
82 PRK15001 SAM-dependent 23S rib 99.0 1.8E-09 4E-14 116.8 10.5 99 230-330 230-340 (378)
83 PTZ00146 fibrillarin; Provisio 99.0 8.1E-09 1.8E-13 107.8 14.7 136 222-361 126-269 (293)
84 PF13659 Methyltransf_26: Meth 99.0 8.1E-10 1.8E-14 98.8 6.3 101 229-331 1-116 (117)
85 PRK00377 cbiT cobalt-precorrin 99.0 5.1E-09 1.1E-13 103.5 12.5 124 224-359 36-166 (198)
86 PF06325 PrmA: Ribosomal prote 99.0 8.1E-09 1.8E-13 108.4 14.2 143 200-364 138-284 (295)
87 COG2264 PrmA Ribosomal protein 99.0 7.9E-09 1.7E-13 108.0 14.0 122 228-363 162-288 (300)
88 COG2813 RsmC 16S RNA G1207 met 99.0 1.6E-09 3.4E-14 112.8 8.5 98 231-331 161-267 (300)
89 TIGR03534 RF_mod_PrmC protein- 99.0 1.8E-08 3.8E-13 102.1 16.0 121 230-361 89-239 (251)
90 KOG1541 Predicted protein carb 99.0 5.2E-09 1.1E-13 103.8 11.5 116 232-357 54-181 (270)
91 TIGR01177 conserved hypothetic 98.9 4.6E-09 1E-13 111.9 12.1 120 227-361 181-313 (329)
92 PF05219 DREV: DREV methyltran 98.9 1.6E-08 3.4E-13 103.3 15.2 155 195-360 64-237 (265)
93 KOG1271 Methyltransferases [Ge 98.9 9.3E-09 2E-13 99.3 11.9 126 226-361 64-203 (227)
94 PRK13942 protein-L-isoaspartat 98.9 4.5E-09 9.7E-14 105.3 10.2 98 226-330 74-176 (212)
95 PLN02232 ubiquinone biosynthes 98.9 6.9E-09 1.5E-13 99.4 11.0 74 257-331 1-82 (160)
96 COG4123 Predicted O-methyltran 98.9 1.1E-08 2.4E-13 104.4 11.5 131 229-372 45-200 (248)
97 PLN03075 nicotianamine synthas 98.9 7.7E-09 1.7E-13 108.3 10.6 102 228-330 123-233 (296)
98 TIGR00080 pimt protein-L-isoas 98.9 8.7E-09 1.9E-13 103.1 10.6 98 226-330 75-177 (215)
99 TIGR03438 probable methyltrans 98.8 1.1E-08 2.3E-13 107.9 10.0 104 228-331 63-178 (301)
100 PRK14121 tRNA (guanine-N(7)-)- 98.8 2.2E-08 4.7E-13 108.5 12.4 99 230-330 124-235 (390)
101 cd02440 AdoMet_MTases S-adenos 98.8 2E-08 4.2E-13 84.7 9.6 97 231-329 1-103 (107)
102 PRK14966 unknown domain/N5-glu 98.8 5.9E-08 1.3E-12 105.9 14.1 125 229-363 252-405 (423)
103 PRK09328 N5-glutamine S-adenos 98.8 6.4E-08 1.4E-12 99.7 13.1 123 228-361 108-260 (275)
104 TIGR00438 rrmJ cell division p 98.8 2.4E-08 5.1E-13 97.8 9.1 98 227-330 31-146 (188)
105 PRK13256 thiopurine S-methyltr 98.8 4.7E-08 1E-12 98.9 11.1 101 228-331 43-164 (226)
106 TIGR03533 L3_gln_methyl protei 98.8 1.1E-07 2.5E-12 99.4 14.3 120 229-360 122-271 (284)
107 PRK10901 16S rRNA methyltransf 98.7 6.5E-08 1.4E-12 106.8 12.5 128 226-359 242-397 (427)
108 TIGR00536 hemK_fam HemK family 98.7 1.2E-07 2.5E-12 99.2 13.5 121 230-361 116-267 (284)
109 PF06080 DUF938: Protein of un 98.7 1.5E-07 3.3E-12 93.5 13.3 147 206-361 11-190 (204)
110 PRK00312 pcm protein-L-isoaspa 98.7 8.1E-08 1.8E-12 95.7 11.2 95 226-330 76-175 (212)
111 PHA03411 putative methyltransf 98.7 1.4E-07 3E-12 97.8 13.0 126 229-360 65-211 (279)
112 PF05148 Methyltransf_8: Hypot 98.7 5.9E-08 1.3E-12 96.3 9.7 111 230-362 74-184 (219)
113 PF03291 Pox_MCEL: mRNA cappin 98.7 4.8E-08 1E-12 104.3 9.7 102 228-331 62-187 (331)
114 PF05891 Methyltransf_PK: AdoM 98.7 1.2E-07 2.5E-12 94.9 11.2 135 228-364 55-202 (218)
115 PRK07402 precorrin-6B methylas 98.7 1.1E-07 2.3E-12 93.8 11.0 99 227-331 39-143 (196)
116 PRK14901 16S rRNA methyltransf 98.7 1.2E-07 2.5E-12 105.0 11.7 127 226-357 250-407 (434)
117 PRK14904 16S rRNA methyltransf 98.7 9.5E-08 2.1E-12 106.0 10.7 127 226-358 248-401 (445)
118 TIGR00563 rsmB ribosomal RNA s 98.6 1.7E-07 3.6E-12 103.5 11.9 122 227-354 237-387 (426)
119 KOG2940 Predicted methyltransf 98.6 3.7E-08 8E-13 98.2 5.8 130 232-364 76-228 (325)
120 PRK11805 N5-glutamine S-adenos 98.6 3E-07 6.6E-12 97.3 12.3 119 230-360 135-283 (307)
121 KOG1975 mRNA cap methyltransfe 98.6 7.4E-08 1.6E-12 100.3 7.2 103 228-332 117-239 (389)
122 TIGR00446 nop2p NOL1/NOP2/sun 98.6 1E-07 2.2E-12 98.6 7.9 109 226-334 69-203 (264)
123 PF01739 CheR: CheR methyltran 98.6 2.3E-07 4.9E-12 92.2 10.0 104 228-331 31-176 (196)
124 PF05724 TPMT: Thiopurine S-me 98.6 4.7E-07 1E-11 91.4 12.3 133 227-363 36-190 (218)
125 PF01135 PCMT: Protein-L-isoas 98.6 1.1E-07 2.5E-12 95.2 7.3 99 226-331 70-173 (209)
126 PRK14903 16S rRNA methyltransf 98.6 2.9E-07 6.2E-12 101.8 10.8 129 226-359 235-391 (431)
127 TIGR03704 PrmC_rel_meth putati 98.5 8.8E-07 1.9E-11 91.2 13.2 122 229-360 87-237 (251)
128 smart00650 rADc Ribosomal RNA 98.5 2.9E-07 6.3E-12 88.7 8.8 96 227-329 12-112 (169)
129 KOG2361 Predicted methyltransf 98.5 4.5E-07 9.7E-12 91.4 10.1 101 231-331 74-184 (264)
130 PRK13943 protein-L-isoaspartat 98.5 4.2E-07 9.2E-12 96.8 10.4 97 227-330 79-180 (322)
131 COG2519 GCD14 tRNA(1-methylade 98.5 6E-07 1.3E-11 91.4 10.8 121 224-360 90-217 (256)
132 PRK14902 16S rRNA methyltransf 98.5 4E-07 8.7E-12 101.0 10.3 128 226-359 248-404 (444)
133 KOG3045 Predicted RNA methylas 98.5 9E-07 2E-11 89.9 11.6 112 229-364 181-292 (325)
134 COG2242 CobL Precorrin-6B meth 98.5 2.9E-06 6.4E-11 83.0 14.8 121 222-357 28-154 (187)
135 PRK00811 spermidine synthase; 98.5 5.9E-07 1.3E-11 94.0 10.5 101 229-331 77-192 (283)
136 PHA03412 putative methyltransf 98.5 5.4E-07 1.2E-11 91.5 9.5 96 229-325 50-158 (241)
137 COG2518 Pcm Protein-L-isoaspar 98.5 8.7E-07 1.9E-11 88.3 10.2 95 225-330 69-169 (209)
138 PF00891 Methyltransf_2: O-met 98.4 5.9E-07 1.3E-11 91.2 9.0 100 227-332 99-201 (241)
139 COG2890 HemK Methylase of poly 98.4 2.9E-06 6.3E-11 88.8 14.2 119 231-361 113-261 (280)
140 PRK04457 spermidine synthase; 98.4 7.6E-07 1.6E-11 92.2 8.9 101 228-330 66-177 (262)
141 PF02390 Methyltransf_4: Putat 98.4 2E-06 4.4E-11 85.3 11.3 119 232-360 21-157 (195)
142 PF07942 N2227: N2227-like pro 98.4 5.7E-06 1.2E-10 85.8 14.7 133 227-363 55-242 (270)
143 PRK11783 rlmL 23S rRNA m(2)G24 98.4 1.1E-06 2.3E-11 102.9 9.6 123 228-361 538-678 (702)
144 PF08241 Methyltransf_11: Meth 98.3 2E-07 4.3E-12 79.1 2.0 91 472-570 1-95 (95)
145 PRK01581 speE spermidine synth 98.3 5.7E-06 1.2E-10 89.0 13.5 126 229-360 151-294 (374)
146 PF08704 GCD14: tRNA methyltra 98.3 2.6E-06 5.6E-11 87.5 10.1 122 224-360 36-168 (247)
147 PRK03612 spermidine synthase; 98.3 4.8E-06 1.1E-10 94.3 13.2 124 228-357 297-438 (521)
148 PRK10611 chemotaxis methyltran 98.3 3.7E-06 7.9E-11 88.2 11.0 101 230-330 117-262 (287)
149 PRK13168 rumA 23S rRNA m(5)U19 98.3 7.1E-06 1.5E-10 91.1 13.3 118 227-361 296-422 (443)
150 PLN02781 Probable caffeoyl-CoA 98.3 3.3E-06 7.1E-11 86.1 9.0 98 229-330 69-178 (234)
151 PLN02366 spermidine synthase 98.2 4.5E-06 9.8E-11 88.5 10.3 101 228-330 91-206 (308)
152 PRK15128 23S rRNA m(5)C1962 me 98.2 9.8E-06 2.1E-10 88.8 12.0 102 228-331 220-340 (396)
153 TIGR00417 speE spermidine synt 98.2 5.6E-06 1.2E-10 86.0 9.3 100 229-330 73-186 (270)
154 PLN02672 methionine S-methyltr 98.2 1.1E-05 2.3E-10 97.4 12.5 122 229-360 119-300 (1082)
155 KOG2899 Predicted methyltransf 98.2 1.1E-05 2.4E-10 81.5 10.6 100 229-329 59-208 (288)
156 COG1352 CheR Methylase of chem 98.2 1.2E-05 2.6E-10 83.5 11.3 103 229-331 97-242 (268)
157 COG0220 Predicted S-adenosylme 98.2 4.8E-06 1E-10 84.6 8.1 97 232-330 52-164 (227)
158 PRK03522 rumB 23S rRNA methylu 98.1 1.5E-05 3.2E-10 84.7 10.5 97 229-332 174-276 (315)
159 TIGR00479 rumA 23S rRNA (uraci 98.1 2.8E-05 6E-10 86.0 12.9 97 227-330 291-396 (431)
160 COG0500 SmtA SAM-dependent met 98.1 2.7E-05 5.9E-10 67.8 10.3 96 232-332 52-157 (257)
161 KOG3987 Uncharacterized conser 98.1 5E-06 1.1E-10 82.1 6.1 157 191-360 80-257 (288)
162 PRK11727 23S rRNA mA1618 methy 98.1 6.5E-05 1.4E-09 80.1 14.3 98 205-303 90-200 (321)
163 PRK00107 gidB 16S rRNA methylt 98.1 3.5E-05 7.6E-10 76.0 11.3 149 448-612 27-187 (187)
164 TIGR00478 tly hemolysin TlyA f 98.0 3.1E-05 6.7E-10 78.8 11.2 91 228-330 75-171 (228)
165 PF13489 Methyltransf_23: Meth 98.0 2.2E-06 4.8E-11 80.2 2.1 110 448-574 7-117 (161)
166 PRK10909 rsmD 16S rRNA m(2)G96 98.0 3E-05 6.5E-10 77.3 10.2 98 229-331 54-160 (199)
167 COG2521 Predicted archaeal met 98.0 1.3E-05 2.8E-10 80.7 7.4 134 223-362 129-276 (287)
168 COG1041 Predicted DNA modifica 98.0 3.8E-05 8.3E-10 81.8 11.2 120 226-361 195-328 (347)
169 COG3963 Phospholipid N-methylt 98.0 2.4E-05 5.2E-10 75.2 8.5 103 228-330 48-156 (194)
170 COG4122 Predicted O-methyltran 98.0 2E-05 4.4E-10 79.5 7.7 99 228-330 59-166 (219)
171 PLN02476 O-methyltransferase 97.9 1.7E-05 3.6E-10 82.8 7.0 98 229-330 119-228 (278)
172 PF10294 Methyltransf_16: Puta 97.9 4E-05 8.7E-10 74.5 8.6 102 227-332 44-158 (173)
173 PRK00274 ksgA 16S ribosomal RN 97.9 2.2E-05 4.7E-10 81.7 6.7 71 227-300 41-113 (272)
174 PF11968 DUF3321: Putative met 97.9 0.00014 3.1E-09 72.8 11.7 120 230-364 53-182 (219)
175 PRK14896 ksgA 16S ribosomal RN 97.8 4.3E-05 9.3E-10 78.9 8.0 70 227-301 28-100 (258)
176 PF01596 Methyltransf_3: O-met 97.8 4E-05 8.7E-10 76.7 7.4 97 230-330 47-155 (205)
177 KOG1499 Protein arginine N-met 97.8 3.2E-05 6.9E-10 82.1 6.9 102 228-329 60-166 (346)
178 PRK01544 bifunctional N5-gluta 97.8 0.00011 2.4E-09 83.1 11.6 101 228-330 347-462 (506)
179 PF02353 CMAS: Mycolic acid cy 97.8 1.1E-05 2.4E-10 84.2 3.3 111 453-571 50-165 (273)
180 KOG2904 Predicted methyltransf 97.8 0.00017 3.8E-09 74.2 11.7 121 206-331 130-286 (328)
181 KOG1661 Protein-L-isoaspartate 97.8 4.8E-05 1E-09 75.6 7.4 98 226-330 80-193 (237)
182 TIGR02085 meth_trns_rumB 23S r 97.8 0.0001 2.2E-09 80.3 10.0 96 229-331 234-335 (374)
183 PF05185 PRMT5: PRMT5 arginine 97.8 7.5E-05 1.6E-09 83.1 9.2 119 207-327 164-294 (448)
184 KOG3178 Hydroxyindole-O-methyl 97.8 0.00031 6.8E-09 74.8 12.9 96 229-331 178-276 (342)
185 PLN02233 ubiquinone biosynthes 97.7 4.4E-05 9.5E-10 79.0 6.3 111 448-572 59-182 (261)
186 KOG1269 SAM-dependent methyltr 97.7 5E-05 1.1E-09 82.2 6.9 101 227-330 109-215 (364)
187 PF01170 UPF0020: Putative RNA 97.7 5.5E-05 1.2E-09 74.0 6.4 121 227-360 27-168 (179)
188 PRK10258 biotin biosynthesis p 97.7 4.9E-05 1.1E-09 77.6 6.3 96 466-571 41-139 (251)
189 KOG1331 Predicted methyltransf 97.7 2.2E-05 4.9E-10 81.1 3.7 99 229-333 46-146 (293)
190 PLN02244 tocopherol O-methyltr 97.7 4.6E-05 9.9E-10 81.9 5.7 94 467-572 118-223 (340)
191 TIGR00755 ksgA dimethyladenosi 97.7 0.0002 4.4E-09 73.6 9.9 68 227-299 28-101 (253)
192 TIGR02752 MenG_heptapren 2-hep 97.7 0.00012 2.6E-09 73.5 8.0 111 448-572 31-151 (231)
193 PRK12335 tellurite resistance 97.7 5.2E-05 1.1E-09 79.4 5.4 115 470-595 123-258 (287)
194 PRK09489 rsmC 16S ribosomal RN 97.7 0.00073 1.6E-08 72.8 14.3 97 470-571 199-302 (342)
195 COG2263 Predicted RNA methylas 97.7 0.00013 2.8E-09 71.7 7.6 117 228-361 45-166 (198)
196 PRK04148 hypothetical protein; 97.7 0.00012 2.5E-09 68.5 7.0 90 229-329 17-108 (134)
197 PRK11933 yebU rRNA (cytosine-C 97.6 0.00012 2.6E-09 81.9 8.1 123 226-354 111-261 (470)
198 smart00828 PKS_MT Methyltransf 97.6 3.7E-05 7.9E-10 76.9 3.3 95 469-573 1-105 (224)
199 PRK14103 trans-aconitate 2-met 97.6 8.5E-05 1.8E-09 76.2 5.5 93 468-571 30-125 (255)
200 PRK11705 cyclopropane fatty ac 97.6 8.4E-05 1.8E-09 81.2 5.4 102 459-571 161-266 (383)
201 PTZ00098 phosphoethanolamine N 97.6 8.3E-05 1.8E-09 77.0 5.0 104 458-573 45-157 (263)
202 TIGR00477 tehB tellurite resis 97.5 0.00012 2.7E-09 72.3 5.6 93 469-570 32-131 (195)
203 PLN02589 caffeoyl-CoA O-methyl 97.5 0.0002 4.3E-09 73.7 7.1 96 230-329 81-189 (247)
204 TIGR00095 RNA methyltransferas 97.5 0.00061 1.3E-08 67.3 9.6 98 229-331 50-160 (189)
205 PLN02823 spermine synthase 97.5 0.00069 1.5E-08 72.8 10.6 100 229-330 104-220 (336)
206 PF12147 Methyltransf_20: Puta 97.4 0.00089 1.9E-08 69.9 10.9 134 229-362 136-297 (311)
207 PF12847 Methyltransf_18: Meth 97.4 5.4E-05 1.2E-09 66.8 1.7 99 469-572 3-111 (112)
208 PTZ00338 dimethyladenosine tra 97.4 0.00024 5.2E-09 75.0 6.6 69 227-300 35-109 (294)
209 PRK04338 N(2),N(2)-dimethylgua 97.4 0.0003 6.6E-09 76.8 7.6 96 230-331 59-159 (382)
210 TIGR00452 methyltransferase, p 97.4 0.00021 4.5E-09 76.1 5.8 96 469-571 123-224 (314)
211 PRK08287 cobalt-precorrin-6Y C 97.4 0.00035 7.6E-09 68.2 6.9 118 459-590 25-150 (187)
212 PRK00377 cbiT cobalt-precorrin 97.4 0.00064 1.4E-08 67.2 8.7 145 435-594 7-168 (198)
213 KOG3191 Predicted N6-DNA-methy 97.4 0.002 4.3E-08 63.0 11.6 121 231-360 46-190 (209)
214 PRK11036 putative S-adenosyl-L 97.4 0.00014 3E-09 74.7 4.0 93 469-571 46-148 (255)
215 TIGR00537 hemK_rel_arch HemK-r 97.4 0.00051 1.1E-08 66.6 7.5 121 469-595 21-164 (179)
216 PRK15068 tRNA mo(5)U34 methylt 97.4 0.0002 4.4E-09 76.5 5.0 95 469-571 124-225 (322)
217 PRK11207 tellurite resistance 97.3 0.00014 3.1E-09 71.9 3.5 93 469-570 32-132 (197)
218 PRK08317 hypothetical protein; 97.3 0.00022 4.8E-09 70.9 4.9 100 461-572 15-124 (241)
219 TIGR00406 prmA ribosomal prote 97.3 0.00028 6E-09 74.1 5.8 114 469-594 161-281 (288)
220 TIGR00138 gidB 16S rRNA methyl 97.3 0.0002 4.4E-09 70.2 4.5 130 448-594 25-165 (181)
221 PF09243 Rsm22: Mitochondrial 97.3 0.0017 3.8E-08 67.8 11.6 125 228-360 33-165 (274)
222 PF01209 Ubie_methyltran: ubiE 97.3 0.00017 3.7E-09 73.6 4.0 113 448-572 33-153 (233)
223 PRK11088 rrmA 23S rRNA methylt 97.3 0.00029 6.3E-09 73.2 5.2 90 468-572 86-181 (272)
224 PLN02396 hexaprenyldihydroxybe 97.2 0.00028 6E-09 75.4 4.5 95 469-572 133-235 (322)
225 PRK14968 putative methyltransf 97.2 0.00054 1.2E-08 66.0 6.2 138 469-611 25-188 (188)
226 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.2 0.00047 1E-08 71.3 5.8 133 228-362 56-238 (256)
227 PRK00121 trmB tRNA (guanine-N( 97.2 0.00032 6.9E-09 69.8 4.3 123 468-594 41-179 (202)
228 PTZ00146 fibrillarin; Provisio 97.2 0.0012 2.6E-08 69.5 8.7 99 462-571 129-236 (293)
229 KOG3201 Uncharacterized conser 97.2 0.00019 4.1E-09 68.7 2.5 136 229-372 30-176 (201)
230 PRK00517 prmA ribosomal protei 97.2 0.00081 1.8E-08 69.1 7.2 121 469-611 121-249 (250)
231 COG2226 UbiE Methylase involve 97.2 0.00049 1.1E-08 70.4 5.1 111 448-571 37-155 (238)
232 PRK01683 trans-aconitate 2-met 97.1 0.00047 1E-08 70.6 4.9 114 466-591 30-153 (258)
233 KOG1500 Protein arginine N-met 97.1 0.0023 5E-08 67.6 9.7 98 229-330 178-282 (517)
234 TIGR02072 BioC biotin biosynth 97.1 0.00034 7.4E-09 69.7 3.2 96 469-572 36-135 (240)
235 PF02527 GidB: rRNA small subu 97.1 0.003 6.4E-08 62.4 9.6 93 231-330 51-148 (184)
236 PRK11760 putative 23S rRNA C24 97.1 0.0034 7.5E-08 67.2 10.5 96 225-330 208-305 (357)
237 PRK00536 speE spermidine synth 97.0 0.0041 8.8E-08 64.7 10.6 92 228-331 72-172 (262)
238 COG1092 Predicted SAM-dependen 97.0 0.004 8.7E-08 68.2 10.9 102 229-332 218-338 (393)
239 KOG2798 Putative trehalase [Ca 97.0 0.0056 1.2E-07 64.4 11.4 148 208-362 133-336 (369)
240 PF02475 Met_10: Met-10+ like- 97.0 0.0042 9.1E-08 62.1 9.6 94 227-327 100-199 (200)
241 PRK04266 fibrillarin; Provisio 97.0 0.0034 7.3E-08 63.9 9.0 97 460-570 67-174 (226)
242 PF02384 N6_Mtase: N-6 DNA Met 96.9 0.0029 6.4E-08 66.7 8.6 106 227-332 45-185 (311)
243 COG0421 SpeE Spermidine syntha 96.9 0.0085 1.8E-07 63.0 11.8 99 230-330 78-190 (282)
244 TIGR00740 methyltransferase, p 96.9 0.00043 9.4E-09 70.2 2.2 99 469-573 55-162 (239)
245 KOG2352 Predicted spermine/spe 96.9 0.0044 9.6E-08 68.7 9.8 98 231-330 51-161 (482)
246 PF03602 Cons_hypoth95: Conser 96.9 0.0017 3.6E-08 64.0 5.7 115 207-331 26-154 (183)
247 PRK05785 hypothetical protein; 96.9 0.0019 4E-08 65.6 6.2 105 448-566 35-141 (226)
248 TIGR02143 trmA_only tRNA (urac 96.8 0.0027 5.7E-08 68.8 7.5 92 231-331 200-312 (353)
249 PRK15001 SAM-dependent 23S rib 96.8 0.0033 7.2E-08 68.6 8.2 91 231-330 47-142 (378)
250 TIGR02987 met_A_Alw26 type II 96.8 0.0079 1.7E-07 68.4 11.3 109 228-336 31-202 (524)
251 COG4627 Uncharacterized protei 96.7 0.00056 1.2E-08 65.1 1.3 53 283-335 38-91 (185)
252 TIGR01934 MenG_MenH_UbiE ubiqu 96.7 0.0014 3.1E-08 64.7 4.2 93 469-572 41-143 (223)
253 KOG2915 tRNA(1-methyladenosine 96.7 0.0088 1.9E-07 61.9 9.7 129 224-370 101-239 (314)
254 COG0144 Sun tRNA and rRNA cyto 96.7 0.018 3.8E-07 62.5 12.7 132 224-360 152-314 (355)
255 PRK15451 tRNA cmo(5)U34 methyl 96.7 0.0011 2.4E-08 68.0 3.1 98 469-572 58-164 (247)
256 PF05401 NodS: Nodulation prot 96.7 0.0018 3.9E-08 64.3 4.4 151 449-609 24-192 (201)
257 PRK05031 tRNA (uracil-5-)-meth 96.7 0.0061 1.3E-07 66.2 9.0 93 230-331 208-321 (362)
258 PF08242 Methyltransf_12: Meth 96.7 0.0013 2.8E-08 57.1 3.1 89 472-568 1-99 (99)
259 PRK11873 arsM arsenite S-adeno 96.7 0.0014 3E-08 67.8 3.6 96 463-572 75-183 (272)
260 TIGR01983 UbiG ubiquinone bios 96.7 0.0019 4.2E-08 64.3 4.5 122 443-572 19-149 (224)
261 PF01564 Spermine_synth: Sperm 96.7 0.0071 1.5E-07 62.3 8.7 123 228-356 76-213 (246)
262 PRK09328 N5-glutamine S-adenos 96.6 0.0041 9E-08 64.0 7.0 136 469-611 110-275 (275)
263 TIGR00438 rrmJ cell division p 96.6 0.003 6.6E-08 61.8 5.6 134 463-610 30-186 (188)
264 PRK11188 rrmJ 23S rRNA methylt 96.6 0.0053 1.2E-07 61.5 7.3 126 469-610 53-205 (209)
265 PF01728 FtsJ: FtsJ-like methy 96.6 0.0012 2.6E-08 64.1 2.5 96 228-330 23-139 (181)
266 KOG1663 O-methyltransferase [S 96.6 0.011 2.4E-07 59.8 9.4 97 230-330 75-183 (237)
267 PRK05134 bifunctional 3-demeth 96.6 0.0016 3.4E-08 65.6 3.4 95 469-572 50-151 (233)
268 PF10672 Methyltrans_SAM: S-ad 96.6 0.0034 7.4E-08 66.0 5.9 101 229-331 124-239 (286)
269 COG0030 KsgA Dimethyladenosine 96.5 0.0057 1.2E-07 63.3 7.2 70 227-299 29-102 (259)
270 TIGR00080 pimt protein-L-isoas 96.5 0.0026 5.6E-08 63.7 4.5 103 454-571 66-176 (215)
271 TIGR03534 RF_mod_PrmC protein- 96.5 0.0031 6.6E-08 63.9 5.1 120 469-592 89-237 (251)
272 TIGR03439 methyl_EasF probable 96.5 0.013 2.9E-07 62.6 10.0 102 228-330 76-197 (319)
273 COG0357 GidB Predicted S-adeno 96.5 0.024 5.3E-07 57.2 11.2 121 229-361 68-193 (215)
274 PRK13942 protein-L-isoaspartat 96.5 0.0031 6.8E-08 63.2 4.8 99 455-571 66-175 (212)
275 COG2520 Predicted methyltransf 96.5 0.027 5.7E-07 60.7 12.0 122 228-358 188-315 (341)
276 KOG3420 Predicted RNA methylas 96.5 0.0039 8.4E-08 59.0 4.9 71 228-300 48-122 (185)
277 KOG0820 Ribosomal RNA adenine 96.5 0.013 2.7E-07 60.8 9.0 70 225-299 55-130 (315)
278 TIGR00308 TRM1 tRNA(guanine-26 96.5 0.0063 1.4E-07 66.4 7.3 94 230-330 46-147 (374)
279 smart00138 MeTrc Methyltransfe 96.5 0.0035 7.7E-08 65.1 5.2 133 438-576 68-246 (264)
280 TIGR00091 tRNA (guanine-N(7)-) 96.5 0.0031 6.7E-08 62.2 4.4 120 469-591 18-153 (194)
281 PF01269 Fibrillarin: Fibrilla 96.4 0.02 4.4E-07 57.9 10.2 143 213-361 58-210 (229)
282 PRK13944 protein-L-isoaspartat 96.4 0.0049 1.1E-07 61.4 5.7 101 456-571 63-172 (205)
283 PF13847 Methyltransf_31: Meth 96.4 0.0033 7.1E-08 59.2 4.1 97 469-574 5-112 (152)
284 cd02440 AdoMet_MTases S-adenos 96.4 0.0033 7.2E-08 52.4 3.7 95 470-571 1-103 (107)
285 COG2265 TrmA SAM-dependent met 96.4 0.018 3.9E-07 64.0 10.4 129 193-331 261-397 (432)
286 PF03848 TehB: Tellurite resis 96.4 0.0021 4.5E-08 63.8 2.7 95 470-570 33-131 (192)
287 COG3897 Predicted methyltransf 96.4 0.013 2.7E-07 58.2 7.9 97 227-330 78-178 (218)
288 PRK06922 hypothetical protein; 96.3 0.0016 3.4E-08 75.0 1.8 103 469-573 420-538 (677)
289 COG1189 Predicted rRNA methyla 96.3 0.022 4.9E-07 58.0 9.7 127 228-361 79-222 (245)
290 COG0742 N6-adenine-specific me 96.2 0.024 5.2E-07 56.0 8.9 102 228-331 43-155 (187)
291 PRK14967 putative methyltransf 96.2 0.0094 2E-07 60.0 6.2 126 462-593 33-181 (223)
292 KOG3010 Methyltransferase [Gen 96.2 0.0034 7.3E-08 64.0 2.9 114 466-590 32-158 (261)
293 TIGR03704 PrmC_rel_meth putati 96.2 0.0086 1.9E-07 61.8 6.0 129 469-599 88-243 (251)
294 KOG1709 Guanidinoacetate methy 96.1 0.032 7E-07 56.1 9.1 111 208-329 89-205 (271)
295 PRK14121 tRNA (guanine-N(7)-)- 96.1 0.007 1.5E-07 66.2 5.0 119 469-591 124-256 (390)
296 PRK11783 rlmL 23S rRNA m(2)G24 96.0 0.02 4.3E-07 67.5 9.0 121 469-595 540-679 (702)
297 PRK00216 ubiE ubiquinone/menaq 96.0 0.0061 1.3E-07 60.8 3.9 93 469-572 53-158 (239)
298 PRK06202 hypothetical protein; 96.0 0.011 2.3E-07 59.8 5.5 101 466-572 59-166 (232)
299 PF06325 PrmA: Ribosomal prote 95.9 0.015 3.3E-07 61.5 6.7 145 445-612 146-295 (295)
300 PRK00050 16S rRNA m(4)C1402 me 95.9 0.011 2.3E-07 62.6 5.5 47 227-273 18-64 (296)
301 TIGR02469 CbiT precorrin-6Y C5 95.9 0.019 4.1E-07 51.1 6.1 95 462-571 16-121 (124)
302 PF01728 FtsJ: FtsJ-like methy 95.8 0.016 3.4E-07 56.2 5.8 143 463-611 19-180 (181)
303 PRK07402 precorrin-6B methylas 95.8 0.075 1.6E-06 52.3 10.6 123 451-587 25-158 (196)
304 COG2230 Cfa Cyclopropane fatty 95.8 0.013 2.8E-07 61.4 5.3 101 459-571 66-175 (283)
305 PLN02490 MPBQ/MSBQ methyltrans 95.7 0.0074 1.6E-07 65.0 3.5 117 469-593 115-253 (340)
306 PRK00312 pcm protein-L-isoaspa 95.7 0.018 4E-07 57.3 6.0 96 457-571 70-174 (212)
307 COG2890 HemK Methylase of poly 95.7 0.048 1E-06 57.2 9.3 157 443-611 92-276 (280)
308 PF08123 DOT1: Histone methyla 95.7 0.026 5.7E-07 56.6 6.8 100 226-330 40-157 (205)
309 COG4798 Predicted methyltransf 95.7 0.096 2.1E-06 52.0 10.4 135 225-361 45-203 (238)
310 PF03059 NAS: Nicotianamine sy 95.6 0.048 1E-06 57.1 8.6 102 229-330 121-230 (276)
311 TIGR03587 Pse_Me-ase pseudamin 95.5 0.017 3.7E-07 57.7 4.8 94 468-571 44-141 (204)
312 COG4976 Predicted methyltransf 95.5 0.0049 1.1E-07 62.4 0.9 141 463-612 121-286 (287)
313 COG4262 Predicted spermidine s 95.5 0.08 1.7E-06 57.0 9.8 126 228-361 289-434 (508)
314 PF07021 MetW: Methionine bios 95.5 0.01 2.2E-07 58.8 3.0 96 463-571 11-108 (193)
315 TIGR00536 hemK_fam HemK family 95.4 0.037 7.9E-07 58.0 7.2 137 469-612 116-283 (284)
316 TIGR02081 metW methionine bios 95.4 0.01 2.3E-07 58.3 2.9 86 470-564 16-104 (194)
317 TIGR02716 C20_methyl_CrtF C-20 95.4 0.01 2.2E-07 62.7 2.8 102 464-572 146-254 (306)
318 PRK04457 spermidine synthase; 95.4 0.039 8.5E-07 57.3 7.1 139 466-611 65-216 (262)
319 PF05148 Methyltransf_8: Hypot 95.3 0.034 7.4E-07 55.9 6.1 108 469-596 74-185 (219)
320 COG0293 FtsJ 23S rRNA methylas 95.2 0.05 1.1E-06 54.5 6.8 99 226-330 43-159 (205)
321 PRK11805 N5-glutamine S-adenos 95.1 0.032 7E-07 59.3 5.8 116 469-589 135-281 (307)
322 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.0 0.014 3.1E-07 61.3 2.7 129 225-359 82-244 (283)
323 PRK07580 Mg-protoporphyrin IX 94.9 0.056 1.2E-06 53.9 6.4 99 468-573 64-167 (230)
324 KOG3045 Predicted RNA methylas 94.9 0.026 5.7E-07 58.1 3.9 107 470-597 183-292 (325)
325 TIGR02021 BchM-ChlM magnesium 94.8 0.057 1.2E-06 54.0 6.3 99 468-573 56-159 (219)
326 PF00398 RrnaAD: Ribosomal RNA 94.8 0.081 1.7E-06 54.8 7.4 102 207-322 16-123 (262)
327 TIGR03533 L3_gln_methyl protei 94.7 0.059 1.3E-06 56.6 6.4 119 469-592 123-270 (284)
328 PF05958 tRNA_U5-meth_tr: tRNA 94.7 0.08 1.7E-06 57.4 7.5 51 231-284 199-254 (352)
329 PF05175 MTS: Methyltransferas 94.5 0.052 1.1E-06 52.4 5.0 129 443-585 16-155 (170)
330 COG5459 Predicted rRNA methyla 94.5 0.1 2.2E-06 56.0 7.2 102 230-331 115-226 (484)
331 PF04816 DUF633: Family of unk 94.4 0.32 7E-06 48.8 10.5 115 232-361 1-122 (205)
332 PRK14966 unknown domain/N5-glu 94.4 0.11 2.4E-06 57.4 7.7 156 445-612 236-419 (423)
333 PF05219 DREV: DREV methyltran 94.4 0.049 1.1E-06 56.3 4.6 90 467-571 94-187 (265)
334 COG1064 AdhP Zn-dependent alco 94.3 0.18 4E-06 54.3 8.9 97 225-332 163-261 (339)
335 COG0116 Predicted N6-adenine-s 93.8 0.3 6.4E-06 53.3 9.3 102 230-331 193-345 (381)
336 COG2813 RsmC 16S RNA G1207 met 93.8 0.92 2E-05 48.1 12.7 107 470-585 161-281 (300)
337 COG0500 SmtA SAM-dependent met 93.7 0.17 3.8E-06 43.6 6.3 94 471-574 52-157 (257)
338 TIGR01177 conserved hypothetic 93.7 0.076 1.7E-06 56.8 4.7 121 459-589 176-309 (329)
339 KOG1122 tRNA and rRNA cytosine 93.7 0.39 8.5E-06 52.8 9.9 132 223-360 236-397 (460)
340 PF13578 Methyltransf_24: Meth 93.5 0.019 4.1E-07 50.6 -0.2 95 233-329 1-104 (106)
341 PRK13699 putative methylase; P 93.5 0.23 5E-06 50.6 7.6 83 278-373 4-102 (227)
342 COG2227 UbiG 2-polyprenyl-3-me 93.3 0.061 1.3E-06 55.0 2.9 94 470-572 62-161 (243)
343 PRK13255 thiopurine S-methyltr 93.2 0.11 2.4E-06 52.5 4.6 107 456-570 28-153 (218)
344 PF00891 Methyltransf_2: O-met 93.1 0.066 1.4E-06 54.3 2.9 97 463-572 96-199 (241)
345 PF13679 Methyltransf_32: Meth 93.0 0.14 3.1E-06 47.8 4.9 95 227-331 24-132 (141)
346 COG4123 Predicted O-methyltran 93.0 0.28 6E-06 50.7 7.2 127 466-594 43-192 (248)
347 COG3129 Predicted SAM-dependen 93.0 0.47 1E-05 48.5 8.5 111 191-303 41-164 (292)
348 PF05971 Methyltransf_10: Prot 93.0 0.29 6.4E-06 51.9 7.5 95 205-302 81-187 (299)
349 PF13649 Methyltransf_25: Meth 92.9 0.011 2.4E-07 51.7 -2.7 92 471-566 1-101 (101)
350 KOG3115 Methyltransferase-like 92.8 0.31 6.6E-06 48.9 6.9 37 232-269 64-100 (249)
351 PF02390 Methyltransf_4: Putat 92.8 0.051 1.1E-06 54.0 1.5 122 469-592 19-156 (195)
352 PF09445 Methyltransf_15: RNA 92.6 0.2 4.3E-06 48.6 5.3 66 231-299 2-76 (163)
353 TIGR03840 TMPT_Se_Te thiopurin 92.6 0.19 4.1E-06 50.7 5.4 29 469-497 36-66 (213)
354 PLN02781 Probable caffeoyl-CoA 92.6 0.16 3.5E-06 51.8 4.9 130 468-612 69-233 (234)
355 TIGR00478 tly hemolysin TlyA f 92.3 0.19 4.2E-06 51.3 5.0 108 469-594 77-215 (228)
356 KOG1540 Ubiquinone biosynthesi 92.2 0.27 5.7E-06 50.9 5.8 109 464-584 97-227 (296)
357 TIGR00563 rsmB ribosomal RNA s 92.2 0.29 6.3E-06 54.3 6.6 113 461-580 234-383 (426)
358 TIGR01444 fkbM_fam methyltrans 92.1 0.18 4E-06 46.4 4.2 40 232-272 2-41 (143)
359 COG1889 NOP1 Fibrillarin-like 91.9 2.9 6.3E-05 42.1 12.4 134 222-361 70-212 (231)
360 PF07091 FmrO: Ribosomal RNA m 91.9 0.81 1.7E-05 47.3 8.9 129 228-360 105-241 (251)
361 TIGR03438 probable methyltrans 91.8 0.098 2.1E-06 55.3 2.3 98 469-571 65-176 (301)
362 PF01861 DUF43: Protein of unk 91.7 4.8 0.0001 41.5 14.2 132 228-369 44-184 (243)
363 TIGR00417 speE spermidine synt 91.7 0.47 1E-05 49.3 7.2 103 465-571 70-185 (270)
364 COG4076 Predicted RNA methylas 91.5 0.3 6.6E-06 48.3 5.1 93 231-328 35-133 (252)
365 PLN03075 nicotianamine synthas 91.5 0.57 1.2E-05 49.7 7.6 140 467-613 123-276 (296)
366 KOG4300 Predicted methyltransf 91.5 0.52 1.1E-05 47.5 6.8 123 448-580 51-194 (252)
367 PRK13943 protein-L-isoaspartat 91.5 0.2 4.3E-06 53.8 4.2 99 457-572 72-180 (322)
368 PLN02668 indole-3-acetate carb 91.4 1.3 2.9E-05 48.6 10.6 45 288-333 158-240 (386)
369 KOG2793 Putative N2,N2-dimethy 91.3 1.1 2.3E-05 46.5 9.1 100 229-331 87-200 (248)
370 cd00315 Cyt_C5_DNA_methylase C 91.2 3.2 7E-05 43.4 12.8 126 231-361 2-141 (275)
371 PF08003 Methyltransf_9: Prote 91.1 0.35 7.6E-06 51.3 5.5 96 468-571 116-218 (315)
372 PF13659 Methyltransf_26: Meth 90.9 0.044 9.5E-07 48.6 -1.2 96 470-570 3-113 (117)
373 COG2264 PrmA Ribosomal protein 90.6 0.57 1.2E-05 49.7 6.6 116 467-595 162-287 (300)
374 PF03269 DUF268: Caenorhabditi 90.6 0.19 4.1E-06 48.6 2.7 72 290-361 61-143 (177)
375 PRK00811 spermidine synthase; 90.6 0.71 1.5E-05 48.5 7.3 103 466-571 75-190 (283)
376 PF10354 DUF2431: Domain of un 90.5 2.6 5.5E-05 41.0 10.5 119 234-361 2-150 (166)
377 PRK14902 16S rRNA methyltransf 90.0 0.46 1E-05 53.0 5.6 103 462-571 247-378 (444)
378 PRK10901 16S rRNA methyltransf 90.0 0.42 9E-06 53.1 5.2 106 461-571 240-371 (427)
379 PF06962 rRNA_methylase: Putat 89.6 1.4 3.1E-05 41.7 7.6 97 256-355 2-114 (140)
380 PF03492 Methyltransf_7: SAM d 89.3 0.75 1.6E-05 49.6 6.4 67 287-354 102-210 (334)
381 KOG2187 tRNA uracil-5-methyltr 89.3 0.65 1.4E-05 52.2 5.9 80 200-285 358-442 (534)
382 cd08283 FDH_like_1 Glutathione 89.3 2 4.4E-05 46.6 9.8 104 225-331 181-307 (386)
383 PRK11524 putative methyltransf 89.2 0.86 1.9E-05 47.8 6.6 82 277-372 10-108 (284)
384 PF02005 TRM: N2,N2-dimethylgu 89.2 1.2 2.5E-05 49.0 7.8 131 194-331 13-155 (377)
385 TIGR00446 nop2p NOL1/NOP2/sun 88.9 0.66 1.4E-05 48.2 5.4 104 462-571 68-198 (264)
386 KOG4589 Cell division protein 88.9 2.3 5E-05 42.3 8.7 97 226-330 67-184 (232)
387 PF10294 Methyltransf_16: Puta 88.8 0.4 8.6E-06 46.6 3.5 130 446-582 17-172 (173)
388 PHA01634 hypothetical protein 88.1 2.5 5.4E-05 39.6 7.8 68 229-298 29-98 (156)
389 KOG2198 tRNA cytosine-5-methyl 87.7 2.1 4.6E-05 46.5 8.3 124 211-336 140-302 (375)
390 PF05185 PRMT5: PRMT5 arginine 87.6 0.93 2E-05 50.8 5.9 141 437-583 150-317 (448)
391 PRK13168 rumA 23S rRNA m(5)U19 87.0 3.5 7.6E-05 46.0 10.0 133 462-610 294-441 (443)
392 PRK14901 16S rRNA methyltransf 86.6 1.1 2.3E-05 50.0 5.7 35 552-586 364-402 (434)
393 PRK09880 L-idonate 5-dehydroge 86.6 2.6 5.7E-05 44.8 8.5 95 228-331 169-267 (343)
394 PRK01581 speE spermidine synth 86.6 1.6 3.5E-05 47.7 6.8 107 465-573 148-269 (374)
395 PF04672 Methyltransf_19: S-ad 86.6 1.9 4.1E-05 45.1 7.0 100 230-331 70-191 (267)
396 PLN02232 ubiquinone biosynthes 86.5 0.53 1.1E-05 45.0 2.8 48 520-573 35-82 (160)
397 KOG1541 Predicted protein carb 86.3 3.3 7.2E-05 42.3 8.2 118 457-584 40-175 (270)
398 cd08254 hydroxyacyl_CoA_DH 6-h 86.1 4 8.6E-05 42.5 9.4 94 226-330 163-263 (338)
399 KOG0822 Protein kinase inhibit 86.1 2.1 4.7E-05 48.4 7.5 99 230-329 369-477 (649)
400 KOG1562 Spermidine synthase [A 85.8 2.1 4.5E-05 45.3 6.8 102 227-330 120-236 (337)
401 PRK14903 16S rRNA methyltransf 85.7 0.93 2E-05 50.5 4.6 123 443-571 214-365 (431)
402 PF06859 Bin3: Bicoid-interact 85.7 0.49 1.1E-05 42.9 1.9 38 292-330 1-44 (110)
403 cd08230 glucose_DH Glucose deh 84.9 3.6 7.9E-05 43.9 8.6 97 226-331 170-270 (355)
404 KOG3115 Methyltransferase-like 84.6 1.3 2.7E-05 44.6 4.4 22 553-574 164-185 (249)
405 PF03514 GRAS: GRAS domain fam 84.2 10 0.00022 41.5 11.8 108 231-339 113-252 (374)
406 PF02527 GidB: rRNA small subu 84.1 5.7 0.00012 39.2 8.8 137 445-594 26-173 (184)
407 PRK09424 pntA NAD(P) transhydr 83.4 6.3 0.00014 45.0 9.9 100 226-331 162-286 (509)
408 KOG2361 Predicted methyltransf 82.4 2.6 5.7E-05 43.4 5.7 129 436-573 43-184 (264)
409 PRK03612 spermidine synthase; 82.1 1.7 3.7E-05 49.7 4.9 123 467-591 297-439 (521)
410 KOG2920 Predicted methyltransf 82.1 0.75 1.6E-05 48.3 1.8 101 228-331 116-235 (282)
411 PRK14904 16S rRNA methyltransf 81.9 3 6.4E-05 46.7 6.6 101 462-571 247-376 (445)
412 PRK15128 23S rRNA m(5)C1962 me 81.5 2.3 5.1E-05 46.9 5.5 120 469-594 222-367 (396)
413 PLN02585 magnesium protoporphy 81.4 1.9 4.2E-05 46.1 4.6 94 469-571 146-248 (315)
414 PLN02366 spermidine synthase 80.9 1.3 2.7E-05 47.4 3.0 101 466-571 90-205 (308)
415 KOG0024 Sorbitol dehydrogenase 80.7 6.4 0.00014 42.3 8.1 98 226-330 167-273 (354)
416 KOG1271 Methyltransferases [Ge 80.4 2.5 5.5E-05 41.9 4.6 107 470-582 70-191 (227)
417 COG0220 Predicted S-adenosylme 80.2 2.1 4.6E-05 43.7 4.2 116 469-586 50-180 (227)
418 PLN02476 O-methyltransferase 79.9 2.2 4.7E-05 45.0 4.3 131 467-612 118-278 (278)
419 COG1867 TRM1 N2,N2-dimethylgua 79.7 7.6 0.00016 42.4 8.4 97 229-331 53-155 (380)
420 PRK01747 mnmC bifunctional tRN 79.4 7.3 0.00016 45.7 9.0 57 291-361 165-225 (662)
421 PF01135 PCMT: Protein-L-isoas 79.3 2.2 4.7E-05 43.0 4.0 101 455-570 62-170 (209)
422 TIGR02822 adh_fam_2 zinc-bindi 78.8 12 0.00025 39.8 9.6 92 225-331 162-255 (329)
423 COG2933 Predicted SAM-dependen 78.5 9.4 0.0002 40.0 8.2 120 192-323 177-296 (358)
424 PRK10742 putative methyltransf 78.4 3.7 8.1E-05 42.5 5.4 67 231-300 91-172 (250)
425 TIGR00006 S-adenosyl-methyltra 78.4 4.9 0.00011 42.9 6.5 45 227-272 19-63 (305)
426 KOG1596 Fibrillarin and relate 77.9 29 0.00062 36.1 11.3 115 212-331 140-262 (317)
427 TIGR00479 rumA 23S rRNA (uraci 77.1 6.3 0.00014 43.8 7.2 112 469-593 294-417 (431)
428 PF03291 Pox_MCEL: mRNA cappin 76.9 1.3 2.9E-05 47.6 1.8 111 467-582 62-198 (331)
429 cd08234 threonine_DH_like L-th 76.8 16 0.00034 38.1 9.8 97 225-331 156-258 (334)
430 PF04989 CmcI: Cephalosporin h 76.4 4 8.6E-05 41.2 4.8 97 231-330 35-147 (206)
431 KOG2904 Predicted methyltransf 76.3 16 0.00034 38.6 9.2 158 446-611 129-327 (328)
432 KOG1253 tRNA methyltransferase 76.1 2.1 4.6E-05 48.0 3.1 99 228-331 109-217 (525)
433 PHA03411 putative methyltransf 75.9 2.2 4.7E-05 45.0 2.9 99 469-571 66-182 (279)
434 COG0286 HsdM Type I restrictio 75.8 11 0.00023 42.9 8.7 119 208-333 173-329 (489)
435 COG2384 Predicted SAM-dependen 75.7 58 0.0013 33.3 12.8 116 231-361 19-141 (226)
436 PF07757 AdoMet_MTase: Predict 75.2 2.4 5.1E-05 38.5 2.6 29 228-256 58-86 (112)
437 cd08245 CAD Cinnamyl alcohol d 74.3 16 0.00035 38.1 9.1 96 225-330 159-256 (330)
438 smart00650 rADc Ribosomal RNA 74.3 3.3 7.2E-05 39.7 3.6 93 469-573 15-114 (169)
439 COG2242 CobL Precorrin-6B meth 73.7 39 0.00084 33.7 10.8 142 437-594 3-159 (187)
440 PHA03412 putative methyltransf 73.0 4.5 9.7E-05 41.7 4.3 97 469-570 51-160 (241)
441 TIGR03451 mycoS_dep_FDH mycoth 73.0 15 0.00032 39.3 8.5 96 226-331 174-277 (358)
442 cd08237 ribitol-5-phosphate_DH 72.9 9.9 0.00022 40.5 7.2 93 226-330 161-256 (341)
443 TIGR02825 B4_12hDH leukotriene 72.7 21 0.00045 37.4 9.5 94 226-330 136-237 (325)
444 PF01596 Methyltransf_3: O-met 72.7 1.8 3.9E-05 43.4 1.4 131 467-612 45-205 (205)
445 cd08232 idonate-5-DH L-idonate 72.7 16 0.00036 38.2 8.7 94 228-330 165-262 (339)
446 cd05188 MDR Medium chain reduc 72.6 15 0.00033 36.4 8.1 92 227-331 133-233 (271)
447 COG4301 Uncharacterized conser 71.8 26 0.00057 36.5 9.3 99 229-330 79-193 (321)
448 PRK11933 yebU rRNA (cytosine-C 71.7 5.9 0.00013 44.8 5.3 106 463-571 111-241 (470)
449 PF00107 ADH_zinc_N: Zinc-bind 71.7 4.6 0.0001 36.2 3.7 84 238-331 1-90 (130)
450 TIGR01202 bchC 2-desacetyl-2-h 70.3 17 0.00036 38.2 8.1 87 228-331 144-232 (308)
451 TIGR00675 dcm DNA-methyltransf 70.2 24 0.00052 37.6 9.3 124 232-360 1-137 (315)
452 COG1568 Predicted methyltransf 70.2 23 0.0005 37.4 8.7 122 228-360 152-285 (354)
453 KOG1501 Arginine N-methyltrans 69.9 7.2 0.00016 43.4 5.2 61 208-271 47-107 (636)
454 KOG2730 Methylase [General fun 69.6 7.3 0.00016 39.8 4.8 87 232-324 98-196 (263)
455 cd08281 liver_ADH_like1 Zinc-d 69.5 15 0.00032 39.6 7.7 96 225-330 188-290 (371)
456 COG4627 Uncharacterized protei 69.1 1.5 3.2E-05 42.3 -0.1 47 519-571 39-85 (185)
457 PF01555 N6_N4_Mtase: DNA meth 68.7 8.4 0.00018 37.7 5.1 53 309-372 35-88 (231)
458 cd08239 THR_DH_like L-threonin 67.8 23 0.0005 37.2 8.6 97 226-331 161-263 (339)
459 COG4106 Tam Trans-aconitate me 67.8 13 0.00027 38.1 6.0 124 459-595 21-156 (257)
460 TIGR03366 HpnZ_proposed putati 67.7 19 0.00041 37.1 7.7 94 227-330 119-218 (280)
461 cd08255 2-desacetyl-2-hydroxye 66.5 28 0.00062 35.2 8.7 96 225-331 94-191 (277)
462 PF00145 DNA_methylase: C-5 cy 65.8 29 0.00062 36.1 8.8 124 231-361 2-140 (335)
463 PLN03154 putative allyl alcoho 65.5 30 0.00066 37.0 9.0 95 226-331 156-259 (348)
464 KOG2539 Mitochondrial/chloropl 65.4 21 0.00045 40.2 7.7 100 231-331 203-316 (491)
465 PF01269 Fibrillarin: Fibrilla 65.0 26 0.00057 35.9 7.7 134 463-608 71-223 (229)
466 COG1565 Uncharacterized conser 64.7 7.7 0.00017 42.3 4.2 78 188-272 44-128 (370)
467 TIGR00561 pntA NAD(P) transhyd 64.1 14 0.0003 42.4 6.2 96 227-328 162-282 (511)
468 COG2521 Predicted archaeal met 63.9 9.1 0.0002 39.5 4.2 165 431-612 102-287 (287)
469 COG0604 Qor NADPH:quinone redu 63.7 22 0.00047 38.2 7.4 98 224-332 138-243 (326)
470 PF07942 N2227: N2227-like pro 63.7 6.7 0.00015 41.2 3.4 46 550-595 180-241 (270)
471 PLN02740 Alcohol dehydrogenase 63.5 27 0.00058 37.8 8.2 97 225-330 195-300 (381)
472 PRK10458 DNA cytosine methylas 63.2 1.3E+02 0.0027 34.3 13.6 144 211-359 71-255 (467)
473 COG1063 Tdh Threonine dehydrog 63.2 34 0.00073 37.0 8.9 94 229-331 169-270 (350)
474 PF05891 Methyltransf_PK: AdoM 62.5 8.2 0.00018 39.3 3.7 103 466-574 54-163 (218)
475 KOG1099 SAM-dependent methyltr 62.1 8.4 0.00018 39.6 3.6 111 230-350 43-179 (294)
476 TIGR02819 fdhA_non_GSH formald 61.7 48 0.001 36.3 9.9 102 226-331 183-300 (393)
477 PLN02827 Alcohol dehydrogenase 61.1 32 0.00069 37.3 8.3 96 226-330 191-295 (378)
478 cd08285 NADP_ADH NADP(H)-depen 60.7 37 0.00079 36.0 8.5 96 225-330 163-266 (351)
479 PRK04148 hypothetical protein; 59.7 9.9 0.00021 35.8 3.5 92 469-597 18-111 (134)
480 cd08261 Zn_ADH7 Alcohol dehydr 59.6 48 0.001 34.7 9.1 96 225-330 156-258 (337)
481 cd05278 FDH_like Formaldehyde 59.4 35 0.00076 35.8 8.0 95 226-330 165-267 (347)
482 COG0421 SpeE Spermidine syntha 59.4 13 0.00028 39.3 4.7 96 463-571 72-189 (282)
483 PRK00274 ksgA 16S ribosomal RN 58.7 7.2 0.00016 40.6 2.6 31 457-489 34-64 (272)
484 TIGR03201 dearomat_had 6-hydro 58.5 39 0.00084 35.9 8.3 97 225-331 163-273 (349)
485 COG0287 TyrA Prephenate dehydr 58.0 33 0.00071 36.2 7.4 89 231-327 5-95 (279)
486 PF04445 SAM_MT: Putative SAM- 58.0 18 0.00039 37.2 5.3 67 231-300 78-159 (234)
487 cd08294 leukotriene_B4_DH_like 57.4 54 0.0012 34.0 9.0 93 226-330 141-241 (329)
488 PRK03522 rumB 23S rRNA methylu 56.8 37 0.0008 36.1 7.7 127 469-611 175-314 (315)
489 KOG2651 rRNA adenine N-6-methy 56.8 20 0.00044 39.4 5.6 38 230-270 155-193 (476)
490 cd08295 double_bond_reductase_ 56.1 53 0.0012 34.6 8.8 95 225-330 148-251 (338)
491 COG4122 Predicted O-methyltran 55.4 10 0.00023 38.6 3.1 142 455-612 48-218 (219)
492 COG0270 Dcm Site-specific DNA 55.1 82 0.0018 33.7 10.0 123 230-357 4-141 (328)
493 PLN02823 spermine synthase 54.6 30 0.00065 37.5 6.6 100 466-571 102-219 (336)
494 PRK11524 putative methyltransf 54.5 25 0.00053 36.9 5.8 44 227-273 207-250 (284)
495 PLN02586 probable cinnamyl alc 54.5 34 0.00073 36.8 7.0 95 227-331 182-279 (360)
496 PF01555 N6_N4_Mtase: DNA meth 53.7 23 0.0005 34.5 5.2 42 227-271 190-231 (231)
497 TIGR00755 ksgA dimethyladenosi 52.3 15 0.00033 37.7 3.7 22 468-489 30-51 (253)
498 cd05285 sorbitol_DH Sorbitol d 51.7 68 0.0015 33.8 8.7 97 225-330 159-265 (343)
499 PRK14896 ksgA 16S ribosomal RN 51.4 16 0.00034 37.8 3.7 28 461-490 25-52 (258)
500 cd08236 sugar_DH NAD(P)-depend 51.0 78 0.0017 33.2 9.0 96 226-331 157-259 (343)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=3.9e-154 Score=1236.82 Aligned_cols=495 Identities=53% Similarity=0.985 Sum_probs=475.2
Q ss_pred CccCCCCchhhhhccccccccccccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccccccccCcchhhhhccCCCce
Q 039518 107 EYIPCHDPSYVKKLLPSLDLSRKEELERHCPPLEKRLFCLVPPPKDYKIPIRWPTSRDYVWQSNVNHTRLAEVKGGQNWV 186 (617)
Q Consensus 107 ~y~pc~d~~~~~~~~~~~~~~~~~~~er~Cp~~~~r~~Clvp~P~~Y~~P~~wP~s~d~~W~~n~~~~~L~~~k~~q~W~ 186 (617)
|||||+|+.++.++. +...+.||+|||||+.+++++||||+|++|+.||+||+|||++|++|+||++|+++|+.|||+
T Consensus 1 dy~PC~D~~~~~~~~--~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv 78 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFL--LSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWV 78 (506)
T ss_pred CCcCCCCHHHHHhhc--cCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccce
Confidence 799999999987763 445566899999999999999999999999999999999999999999999999999999999
Q ss_pred eccCcceecCCCCCcccCChhHHHHHHHhhhhh--ccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHH
Q 039518 187 HEKGQLWWFPGGGTHFKHGAPEYIQRLGNMMTN--ETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHEN 264 (617)
Q Consensus 187 ~~e~d~~~Fpgggt~F~~~a~~Y~~~L~~~L~~--~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~ 264 (617)
+.+|+++.|||||++|.+|+.+|++.|.++++. ..+.+|+ +||||||+|+|+++|+++++.++++++.|.+++
T Consensus 79 ~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~-----~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~ 153 (506)
T PF03141_consen 79 RVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRT-----ALDVGCGVASFGAYLLERNVTTMSFAPNDEHEA 153 (506)
T ss_pred eecCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEE-----EEeccceeehhHHHHhhCCceEEEcccccCCch
Confidence 999999999999999999999999999999988 6777887 999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeCCCC-CCCCCChhh
Q 039518 265 QIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAY-RKDKDYPLI 343 (617)
Q Consensus 265 ~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~-~~~~~~~~~ 343 (617)
++|+|.|||+++.+.+...++|||++++||+|||++|+..|..+.+.+|.|++|+|||||+|+++.|+.+ ....+....
T Consensus 154 qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~ 233 (506)
T PF03141_consen 154 QVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEE 233 (506)
T ss_pred hhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHH
Confidence 9999999999999998889999999999999999999999998888999999999999999999999999 444566788
Q ss_pred HHHHHHHHHHcCceEEEEeeeeEEEeeccchhhhhhcccCccCCccccCCCCCCccccccccccccccc---ccCCCCCC
Q 039518 344 WDKLVNLTTAMCWKLIARKIQTAIWIKEENQSCLLHNADLKLIDVCDAVDEFKPSWNTPLGNCVQISSA---QTNSQKLP 420 (617)
Q Consensus 344 W~~le~La~~~gw~~v~~~~~~~IwqKp~~~~C~~~r~~~~~p~lC~~~~d~~~~WY~~L~~c~~~~~~---~~~~~~~~ 420 (617)
|++|+++++++||+++.++++++|||||.+++||.+|+..+.|++|++.+|+|++||++|++||+++++ +.++++++
T Consensus 234 ~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~ 313 (506)
T PF03141_consen 234 WNAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLP 313 (506)
T ss_pred HHHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCC
Confidence 999999999999999999999999999999999999988889999998899999999999999998865 47889999
Q ss_pred CCCCccccCCccccc---cccCccccccchhhHHHHHHHHHHhcc--CCCCCeeeEEeccccccchhhhccCCCeEEEEe
Q 039518 421 PRPERLSVYSESLSR---IGITQEEFTTDTSFWQDQVRHYWQLMN--VNETEIRNAMDMNAYCGGFAVALNSLPVWVMNI 495 (617)
Q Consensus 421 ~wp~rl~~~p~~~~~---~~~~~~~f~~d~~~w~~~v~~y~~~~~--~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv 495 (617)
+||+||+++|+|+.. .|+++|.|++|+++|+++|++|+++++ +++++||||||||||+|||||||.++|||||||
T Consensus 314 ~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNV 393 (506)
T PF03141_consen 314 KWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNV 393 (506)
T ss_pred CChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEEe
Confidence 999999999999764 899999999999999999999999888 999999999999999999999999999999999
Q ss_pred ccCCCCchhHHHHhhcccccccccCCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecChH
Q 039518 496 VPISMKNTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEKS 575 (617)
Q Consensus 496 ~p~~~~~~l~~~~~RGlig~~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~~ 575 (617)
||..++|||++||||||||+||||||+|||||||||||||++|||+| .+||+|++|||||||||||||++||||+.+
T Consensus 394 VP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~---~~rC~~~~illEmDRILRP~G~~iiRD~~~ 470 (506)
T PF03141_consen 394 VPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLY---KDRCEMEDILLEMDRILRPGGWVIIRDTVD 470 (506)
T ss_pred cccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhh---cccccHHHHHHHhHhhcCCCceEEEeccHH
Confidence 99999999999999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCceEEEeeccccCCCceeEEEEEe
Q 039518 576 LITRIRDLAPKFLWDVELHSLENREKKMESVLICRK 611 (617)
Q Consensus 576 ~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~k 611 (617)
++++|++|+++|||+++++++|+|++++||||||||
T Consensus 471 vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 471 VLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred HHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 999999999999999999999999999999999998
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=5.9e-35 Score=315.37 Aligned_cols=196 Identities=18% Similarity=0.326 Sum_probs=157.7
Q ss_pred ccccccccccccccCCCCCCCCCCccc------cCCcccccccc---------CccccccchhhHHHHHHHHHHhcc---
Q 039518 401 TPLGNCVQISSAQTNSQKLPPRPERLS------VYSESLSRIGI---------TQEEFTTDTSFWQDQVRHYWQLMN--- 462 (617)
Q Consensus 401 ~~L~~c~~~~~~~~~~~~~~~wp~rl~------~~p~~~~~~~~---------~~~~f~~d~~~w~~~v~~y~~~~~--- 462 (617)
.+...|+.|.+.. ...+.+||+.-. .+-++|+.... ..=.|..+..+++++|++|++.|.
T Consensus 32 ~~~~~CLVp~P~g--Yk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~ 109 (506)
T PF03141_consen 32 EERLRCLVPPPKG--YKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPHGADHYIDQIAEMI 109 (506)
T ss_pred CCCCccccCCCcc--CCCCCCCCcccceeeecccCchHHhhhcccccceeecCCEEEeCCCCccccCCHHHHHHHHHHHh
Confidence 3556899888754 455899999653 33334432221 233477888888999999997766
Q ss_pred -C--CCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhcc---cccccccCCCCCCCCCccchhhc
Q 039518 463 -V--NETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGI---LGAFHDWCEPFSTYPRTYDLLHA 535 (617)
Q Consensus 463 -~--~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGl---ig~~~~~~~~f~typrtyDl~H~ 535 (617)
+ ..|.||++||+|||+|||||+|++++|.+|+++|.+.| +|+||++|||+ ||++.+...||+. |+||||||
T Consensus 110 ~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~--~~fDmvHc 187 (506)
T PF03141_consen 110 PLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPS--NAFDMVHC 187 (506)
T ss_pred hccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCc--cchhhhhc
Confidence 3 56899999999999999999999999999999999999 99999999996 5666666777765 99999997
Q ss_pred cccccccccCCCCCChhhHHhhhhhcccCCceEEEe----------cChHHHHHHHhhhhcCCceEEEeeccccCCCcee
Q 039518 536 NHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR----------DEKSLITRIRDLAPKFLWDVELHSLENREKKMES 605 (617)
Q Consensus 536 ~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~----------d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~ 605 (617)
++|...|.... ..+|+|+|||||||||||++ |..+++++|+++|++|||+..+.+ ..
T Consensus 188 src~i~W~~~~-----g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~~--------~~ 254 (506)
T PF03141_consen 188 SRCLIPWHPND-----GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAEK--------GD 254 (506)
T ss_pred ccccccchhcc-----cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHheee--------CC
Confidence 77777663211 37999999999999999997 346899999999999999999876 55
Q ss_pred EEEEEecc
Q 039518 606 VLICRKKF 613 (617)
Q Consensus 606 ~l~~~k~~ 613 (617)
+.||||+.
T Consensus 255 ~aIwqKp~ 262 (506)
T PF03141_consen 255 TAIWQKPT 262 (506)
T ss_pred EEEEeccC
Confidence 99999984
No 3
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.79 E-value=2e-18 Score=191.75 Aligned_cols=306 Identities=13% Similarity=0.140 Sum_probs=174.0
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCC--CCCCCCCCeeEEEecccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---IGAMISALSTK--QLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~--~Lpf~d~sFDlV~~s~~l 302 (617)
++.+|||||||+|.++..|++.+. .++++|+++.+++.+++.. .++.+...|+. .+++++++||+|+|+.++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l 113 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLL 113 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence 345799999999999999998754 6788899999998876542 24677777774 567888999999999888
Q ss_pred cccccc-hHHHHHHHHHhccCCeEEEEEeCCCCCC-------CCCChhhHHHHHHHHHHcCceEEEEeee--eEEEeecc
Q 039518 303 VDWHAN-DGILLKEVDRVLRPNGYFVYSAPPAYRK-------DKDYPLIWDKLVNLTTAMCWKLIARKIQ--TAIWIKEE 372 (617)
Q Consensus 303 ~h~~~d-~~~~L~el~RvLrPGG~Liis~p~~~~~-------~~~~~~~W~~le~La~~~gw~~v~~~~~--~~IwqKp~ 372 (617)
+|+..+ ...++.++.|+|||||++++.+...... ++.+-..-..+.++..+.++........ ...+.+..
T Consensus 114 ~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 193 (475)
T PLN02336 114 MYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGNSFELSLVGCKCI 193 (475)
T ss_pred HhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCCEEEEEEEEeech
Confidence 777632 5789999999999999999986533222 1122111234666777777776643322 11222222
Q ss_pred chhhhhhcccCccCCccccCCCCCCcccccccccccccccccCCCCCCCCCCccccCCccccccccCccccccchhhHHH
Q 039518 373 NQSCLLHNADLKLIDVCDAVDEFKPSWNTPLGNCVQISSAQTNSQKLPPRPERLSVYSESLSRIGITQEEFTTDTSFWQD 452 (617)
Q Consensus 373 ~~~C~~~r~~~~~p~lC~~~~d~~~~WY~~L~~c~~~~~~~~~~~~~~~wp~rl~~~p~~~~~~~~~~~~f~~d~~~w~~ 452 (617)
.-|..++ .....++.....-+..-...+..++. |+...++.+. ..+.|-...-.+..
T Consensus 194 --~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~y~~~~i~----~~~~f~g~~~~v~~ 250 (475)
T PLN02336 194 --GAYVKNK-KNQNQICWLWQKVSSTNDKGFQRFLD----------------NVQYKSSGIL----RYERVFGEGFVSTG 250 (475)
T ss_pred --hhhhhcc-CCcceEEEEEEeecCCcchhHHHHhh----------------hhccccccHH----HHHHHhCCCCCCCc
Confidence 2222211 11111222111111111122222221 1111111100 00001000000111
Q ss_pred H---HHHHHHhccCCCCCeeeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhh--cc---cc-cccccCC
Q 039518 453 Q---VRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNR--GI---LG-AFHDWCE 521 (617)
Q Consensus 453 ~---v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~R--Gl---ig-~~~~~~~ 521 (617)
. .....+.+.++. -..|||+|||.|+++..|.+. +. +|+=.|-. ..+..+-++ |+ +- ...|+.+
T Consensus 251 ~v~~te~l~~~~~~~~--~~~vLDiGcG~G~~~~~la~~~~~---~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~ 325 (475)
T PLN02336 251 GLETTKEFVDKLDLKP--GQKVLDVGCGIGGGDFYMAENFDV---HVVGIDLSVNMISFALERAIGRKCSVEFEVADCTK 325 (475)
T ss_pred hHHHHHHHHHhcCCCC--CCEEEEEeccCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHhhcCCCceEEEEcCccc
Confidence 1 122233333433 368999999999988877653 22 22223333 555555443 22 11 1234433
Q ss_pred CCCCCC-CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 522 PFSTYP-RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 522 ~f~typ-rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
. .+| .+||+|.+.+.+.+. . +.+.+|-|+-|+|+|||.+++.|
T Consensus 326 ~--~~~~~~fD~I~s~~~l~h~---~---d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 326 K--TYPDNSFDVIYSRDTILHI---Q---DKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred C--CCCCCCEEEEEECCccccc---C---CHHHHHHHHHHHcCCCeEEEEEE
Confidence 1 233 789999998888765 2 24578999999999999999974
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.66 E-value=2.3e-16 Score=159.78 Aligned_cols=102 Identities=26% Similarity=0.284 Sum_probs=92.0
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCC-----cEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIG-----AMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~-----~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
.+|.+|||||||||.++..+++... ...++++|+|+.|++.|+++..+ +.+.++|++.|||+|++||+|.+++.
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg 128 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG 128 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeeh
Confidence 3788999999999999999998754 45899999999999999998543 77899999999999999999999998
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+.++. |+..+|+|++|||||||.+++..
T Consensus 129 lrnv~-d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 129 LRNVT-DIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred hhcCC-CHHHHHHHHHHhhcCCeEEEEEE
Confidence 87776 99999999999999999998865
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.63 E-value=9.2e-16 Score=155.71 Aligned_cols=104 Identities=24% Similarity=0.293 Sum_probs=78.5
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh-----CCCcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER-----GIGAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er-----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
..+|.+|||+|||||.++..++++......+.++|+|+.|++.|+++ ..++.+.++|++++|+++++||+|+|++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 45677899999999999999987633333888999999999999876 2368899999999999999999999999
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.++++. |+..+|+|++|+|||||.+++.+
T Consensus 125 glrn~~-d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 125 GLRNFP-DRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp -GGG-S-SHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHHhhC-CHHHHHHHHHHHcCCCeEEEEee
Confidence 887766 89999999999999999999875
No 6
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.62 E-value=4.8e-15 Score=157.08 Aligned_cols=134 Identities=14% Similarity=0.097 Sum_probs=107.4
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC------CCcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG------IGAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg------~~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||||||+|.++..|++.+. .++++|+++.+++.|+++. ..+.+..++++++++++++||+|+|..
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~ 206 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLE 206 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhh
Confidence 4677899999999999999988765 6788899999999998652 256788888889998888999999999
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEeCCCCCC---------------CCCChh------hHHHHHHHHHHcCceEE
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRK---------------DKDYPL------IWDKLVNLTTAMCWKLI 359 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~---------------~~~~~~------~W~~le~La~~~gw~~v 359 (617)
+++|+. ++..+|.++.++|||||.+++++++.... .+.... .-+++.+++++.||+++
T Consensus 207 vLeHv~-d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~ 285 (322)
T PLN02396 207 VIEHVA-NPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVK 285 (322)
T ss_pred HHHhcC-CHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEE
Confidence 888877 89999999999999999999997643210 111111 13459999999999998
Q ss_pred EEeee
Q 039518 360 ARKIQ 364 (617)
Q Consensus 360 ~~~~~ 364 (617)
...+-
T Consensus 286 ~~~G~ 290 (322)
T PLN02396 286 EMAGF 290 (322)
T ss_pred EEeee
Confidence 76544
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.61 E-value=5.1e-15 Score=152.62 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=89.0
Q ss_pred cCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhC--------CCcEEEEecCCCCCCCCCCeeEE
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERG--------IGAMISALSTKQLPYPSSSFEMV 296 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg--------~~~~~~~~d~~~Lpf~d~sFDlV 296 (617)
+.++.+|||+|||+|.++..++++ +.. ..++++|+|++|++.|+++. .++.+..+|++++|+++++||+|
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V 149 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAI 149 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEE
Confidence 356778999999999999988876 332 26889999999999998652 25778889999999999999999
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+++.+++++. ++..+++|+.|+|||||++++.+.
T Consensus 150 ~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 150 TMGYGLRNVV-DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred EEecccccCC-CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 9998877765 899999999999999999999864
No 8
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.61 E-value=1.5e-15 Score=129.54 Aligned_cols=93 Identities=29% Similarity=0.454 Sum_probs=79.1
Q ss_pred EEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCC--cEEEEecCCCCCCCCCCeeEEEecccccccccchH
Q 039518 233 LDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIG--AMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDG 310 (617)
Q Consensus 233 LDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~--~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d~~ 310 (617)
||+|||+|..+..|++++ ...++++|+++++++.++++..+ +.+...+.+++|+++++||+|++..+++|+ +++.
T Consensus 1 LdiG~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRG--GASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHTT--TCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-SHHH
T ss_pred CEecCcCCHHHHHHHhcc--CCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-cCHH
Confidence 899999999999999982 23788889999999999998543 458889999999999999999999888777 6899
Q ss_pred HHHHHHHHhccCCeEEEE
Q 039518 311 ILLKEVDRVLRPNGYFVY 328 (617)
Q Consensus 311 ~~L~el~RvLrPGG~Lii 328 (617)
.+++|+.|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
No 9
>PLN02244 tocopherol O-methyltransferase
Probab=99.54 E-value=8.4e-14 Score=148.87 Aligned_cols=102 Identities=18% Similarity=0.251 Sum_probs=88.4
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||||||+|.++..|+++. ...++++|+++.+++.|+++ +. ++.+.++|+..+|+++++||+|++..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSME 194 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECC
Confidence 567789999999999999998863 12678889999999888764 33 47888899999999999999999998
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+++|+. +...+++++.|+|||||.+++++.
T Consensus 195 ~~~h~~-d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 195 SGEHMP-DKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred chhccC-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 888876 789999999999999999999864
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.53 E-value=1.2e-13 Score=142.58 Aligned_cols=142 Identities=16% Similarity=0.204 Sum_probs=107.3
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC---CcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI---GAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~---~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
.+.++.+|||||||+|..+..|++.. ...++++|+++.+++.|+++.. ++.+..+|+...|+++++||+|++..+
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~ 126 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDA 126 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhh
Confidence 44567789999999999999887642 2378889999999999998742 477788888888999999999999888
Q ss_pred ccccc-cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCCh-------------hhHHHHHHHHHHcCceEEEEeeeeEE
Q 039518 302 RVDWH-ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYP-------------LIWDKLVNLTTAMCWKLIARKIQTAI 367 (617)
Q Consensus 302 l~h~~-~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~-------------~~W~~le~La~~~gw~~v~~~~~~~I 367 (617)
++|+. .++..++++++++|||||+++++++.......... ..-..+.++++.+||+.+...+....
T Consensus 127 l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d~~~~ 206 (263)
T PTZ00098 127 ILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAKDISDY 206 (263)
T ss_pred HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEEeCcHH
Confidence 88876 47889999999999999999998753221111000 01234777888888888876554433
Q ss_pred E
Q 039518 368 W 368 (617)
Q Consensus 368 w 368 (617)
|
T Consensus 207 ~ 207 (263)
T PTZ00098 207 W 207 (263)
T ss_pred H
Confidence 3
No 11
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.52 E-value=1.6e-14 Score=144.99 Aligned_cols=103 Identities=23% Similarity=0.357 Sum_probs=91.2
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
+|.+|||||||.|.++..|++.|. .|+++|+++.+++.|+.+ ++.+.+....++++....++||+|+|..+++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 677899999999999999999995 788999999999999855 6666677777788876668999999999999
Q ss_pred ccccchHHHHHHHHHhccCCeEEEEEeCCCC
Q 039518 304 DWHANDGILLKEVDRVLRPNGYFVYSAPPAY 334 (617)
Q Consensus 304 h~~~d~~~~L~el~RvLrPGG~Liis~p~~~ 334 (617)
|.+ ++..+++++.+++||||.+++++++.+
T Consensus 136 Hv~-dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 136 HVP-DPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred ccC-CHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 987 899999999999999999999998644
No 12
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.49 E-value=1.4e-13 Score=129.10 Aligned_cols=124 Identities=24% Similarity=0.412 Sum_probs=95.5
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEeccccccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHA 307 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~ 307 (617)
++.+|||||||+|.++..|++.+. .++++|+++.+++. ........+....+.++++||+|+|+.+++|..
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~- 92 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLP- 92 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSS-
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHHHhhcc-
Confidence 455799999999999999988876 67888999999877 333444444445556788999999999888876
Q ss_pred chHHHHHHHHHhccCCeEEEEEeCCCC---------CCCCC----Ch--hhHHHHHHHHHHcCceEEE
Q 039518 308 NDGILLKEVDRVLRPNGYFVYSAPPAY---------RKDKD----YP--LIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 308 d~~~~L~el~RvLrPGG~Liis~p~~~---------~~~~~----~~--~~W~~le~La~~~gw~~v~ 360 (617)
++..+|+++.++|||||+++++++... +.... +. ..-+.+.+++++.||+++.
T Consensus 93 d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 93 DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 899999999999999999999998642 11100 00 1123489999999999875
No 13
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.48 E-value=4.3e-13 Score=134.77 Aligned_cols=106 Identities=22% Similarity=0.236 Sum_probs=86.8
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC----C-CcEEEEecCCCCCCCCCCeeEEEec
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG----I-GAMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg----~-~~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
.+.++.+|||+|||+|.++..+++.......++++|+++.+++.|+++. . ++.+..+|...+++++++||+|+++
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 121 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIG 121 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEe
Confidence 3456778999999999999999876322237888999999999888652 2 4677888888888888999999998
Q ss_pred ccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 300 RCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 300 ~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.++++. +++..+++++.++|+|||++++..+
T Consensus 122 ~~l~~~-~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 122 FGLRNV-PDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred cccccC-CCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 766554 4888999999999999999998765
No 14
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.48 E-value=4.2e-13 Score=137.43 Aligned_cols=100 Identities=18% Similarity=0.227 Sum_probs=84.2
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~ 306 (617)
.++.+|||||||+|.++..|+++... ..++++|+++.|++.|++++ +.+..+|++.++ ++++||+|+|+.+++++
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~-~~v~gvD~s~~~~~~a~~~~--~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~- 102 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPG-AVIEALDSSPEMVAAARERG--VDARTGDVRDWK-PKPDTDVVVSNAALQWV- 102 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHhcC--CcEEEcChhhCC-CCCCceEEEEehhhhhC-
Confidence 45678999999999999999887432 36889999999999998875 567778887775 56799999999877655
Q ss_pred cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 307 ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 307 ~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.++..+++++.++|||||++++..+
T Consensus 103 ~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 103 PEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred CCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 4899999999999999999999865
No 15
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.48 E-value=2.1e-13 Score=139.02 Aligned_cols=101 Identities=23% Similarity=0.369 Sum_probs=88.3
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEeccccccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHA 307 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~ 307 (617)
++.+|||+|||+|.++..|++.+. .+.++|+++.+++.|+++.....+..+|++.+|+++++||+|+++.+ ++|..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~-l~~~~ 117 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLA-VQWCG 117 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECch-hhhcC
Confidence 456799999999999999987764 67888999999999999876667888999999999999999998865 45667
Q ss_pred chHHHHHHHHHhccCCeEEEEEeCC
Q 039518 308 NDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 308 d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
++..+|.++.|+|+|||.++++.+.
T Consensus 118 d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 118 NLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred CHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 8999999999999999999998753
No 16
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.45 E-value=5.9e-13 Score=136.47 Aligned_cols=132 Identities=18% Similarity=0.198 Sum_probs=100.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCC-CCCCCeeEEEecc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLP-YPSSSFEMVHCSR 300 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lp-f~d~sFDlV~~s~ 300 (617)
++.+|||+|||+|.++..|++++. .++++|+++.+++.|+++ +. ++.+..+++.+++ +++++||+|+|..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 346799999999999999999865 677889999999999876 32 3577777877664 5678999999998
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEeCCCCC-------------------------CCCCChhhHHHHHHHHHHcC
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYR-------------------------KDKDYPLIWDKLVNLTTAMC 355 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~-------------------------~~~~~~~~W~~le~La~~~g 355 (617)
+++++. ++..++.++.++|||||++++...+... ..+.....-+++.+++++.|
T Consensus 121 vl~~~~-~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aG 199 (255)
T PRK11036 121 VLEWVA-DPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAG 199 (255)
T ss_pred HHHhhC-CHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCC
Confidence 776654 8899999999999999999987543211 00111122356888899999
Q ss_pred ceEEEEee
Q 039518 356 WKLIARKI 363 (617)
Q Consensus 356 w~~v~~~~ 363 (617)
|+++...+
T Consensus 200 f~~~~~~g 207 (255)
T PRK11036 200 WQIMGKTG 207 (255)
T ss_pred CeEeeeee
Confidence 99887554
No 17
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.45 E-value=1e-12 Score=146.25 Aligned_cols=133 Identities=18% Similarity=0.208 Sum_probs=101.9
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC----CCcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG----IGAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg----~~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
+.++.+|||||||+|.++..|++.. ...++++|+|+.+++.|+++. ..+.+..+|...+++++++||+|+|..+
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~ 341 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDT 341 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCc
Confidence 4567899999999999999888753 226888999999999998752 2467888898888888899999999988
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCCh------------hhHHHHHHHHHHcCceEEEE
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYP------------LIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~------------~~W~~le~La~~~gw~~v~~ 361 (617)
++|+. ++..++.+++|+|||||.++++++......+... ..-..+.+++++.||+.+..
T Consensus 342 l~h~~-d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~ 412 (475)
T PLN02336 342 ILHIQ-DKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIA 412 (475)
T ss_pred ccccC-CHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeee
Confidence 88876 8999999999999999999998754322111111 01122667777778877653
No 18
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.43 E-value=1.5e-12 Score=128.71 Aligned_cols=138 Identities=13% Similarity=0.184 Sum_probs=95.3
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
++.+|||+|||+|.++.+|++++. .++++|+|+.+++.++++ +. ++.+.+.|+..++++ ++||+|+|+.++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~ 105 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVL 105 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecch
Confidence 345799999999999999999865 678889999999887754 33 366777788777764 579999999877
Q ss_pred cccc-cchHHHHHHHHHhccCCeEEEEEe-CCC-CC---CCCCChhhHHHHHHHHHHcCceEEEEeeeeEEEeec
Q 039518 303 VDWH-ANDGILLKEVDRVLRPNGYFVYSA-PPA-YR---KDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKE 371 (617)
Q Consensus 303 ~h~~-~d~~~~L~el~RvLrPGG~Liis~-p~~-~~---~~~~~~~~W~~le~La~~~gw~~v~~~~~~~IwqKp 371 (617)
+++. ++...++.++.++|+|||++++.. ... .. ..+.....-+++.+..+ ||+.+........+.++
T Consensus 106 ~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~~~~~~~~~~ 178 (197)
T PRK11207 106 MFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYNEDVGELHRT 178 (197)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEeeCCHHhhccc
Confidence 6554 356789999999999999965543 110 00 01111111223555544 89888765555555543
No 19
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.43 E-value=9.8e-13 Score=140.26 Aligned_cols=134 Identities=17% Similarity=0.163 Sum_probs=103.2
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC--CCcEEEEecCCCCCCCCCCeeEEEeccccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG--IGAMISALSTKQLPYPSSSFEMVHCSRCRVDW 305 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg--~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~ 305 (617)
++.+|||||||+|.++..+++... ...++++|+++.+++.|+++. .++.+..+|++++++++++||+|+++.+++++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 566899999999999988876521 136788999999999998863 34677888999999999999999999887776
Q ss_pred ccchHHHHHHHHHhccCCeEEEEEeCCC--CCCCCCCh------hhHHHHHHHHHHcCceEEEEee
Q 039518 306 HANDGILLKEVDRVLRPNGYFVYSAPPA--YRKDKDYP------LIWDKLVNLTTAMCWKLIARKI 363 (617)
Q Consensus 306 ~~d~~~~L~el~RvLrPGG~Liis~p~~--~~~~~~~~------~~W~~le~La~~~gw~~v~~~~ 363 (617)
. ++..+|+++.|+|+|||.+++..+.. .+...... ..-+++.+++++.||+.+..+.
T Consensus 192 ~-d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 192 P-DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred C-CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 6 78899999999999999999876422 11110000 0135588899999999887543
No 20
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.42 E-value=7.5e-13 Score=117.41 Aligned_cols=99 Identities=22% Similarity=0.282 Sum_probs=79.8
Q ss_pred CCCeEEEECCCCcHHHHHhcc--CCCcEEEeeecCCcHHHHHHHHHhC------CCcEEEEecC-CCCCCCCCCeeEEEe
Q 039518 228 GVFQVLDVGCGVASFSAFLLP--LDIQTMSFAPKDGHENQIQFALERG------IGAMISALST-KQLPYPSSSFEMVHC 298 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~--~gv~~v~v~~iDis~~~lq~A~erg------~~~~~~~~d~-~~Lpf~d~sFDlV~~ 298 (617)
|+.+|||+|||+|.++..+++ .+. .++++|+++.+++.|+++. .++.+...|+ ..... .+.||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGA---RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEE
Confidence 567899999999999999999 444 5788899999999998873 4688888888 33333 345999999
Q ss_pred cc-cccccc--cchHHHHHHHHHhccCCeEEEEEe
Q 039518 299 SR-CRVDWH--ANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 299 s~-~l~h~~--~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.. +++++. ++...+++++.+.|+|||++++..
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 87 444333 356789999999999999999975
No 21
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.42 E-value=1.9e-12 Score=137.55 Aligned_cols=130 Identities=19% Similarity=0.126 Sum_probs=97.8
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHH--Hh----CCCcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFAL--ER----GIGAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~--er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
.+.+|||||||+|.++..+++.+.. .+.++|+++.++..++ ++ ..++.+..++++.+|+ +++||+|+|..+
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~v 198 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGV 198 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECCh
Confidence 3467999999999999999988754 4788899998876433 22 2357788889999998 788999999988
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCC-----CC----------ChhhHHHHHHHHHHcCceEEEE
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKD-----KD----------YPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~-----~~----------~~~~W~~le~La~~~gw~~v~~ 361 (617)
++|.. ++..+|++++++|+|||.+++.+....... +. ....-..+..+++++||+.+..
T Consensus 199 l~H~~-dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~ 272 (322)
T PRK15068 199 LYHRR-SPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRI 272 (322)
T ss_pred hhccC-CHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEE
Confidence 87765 899999999999999999998743111110 00 0001235888899999998764
No 22
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.40 E-value=2.1e-12 Score=132.07 Aligned_cols=103 Identities=16% Similarity=0.241 Sum_probs=86.4
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEeccccccc
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDW 305 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~ 305 (617)
..++.+|||||||+|.++..++++... ..+.++|+++.+++.|+++..++.+..+|+..+. ++++||+|+++.+++ |
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~-~ 105 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPA-ARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQ-W 105 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChh-h
Confidence 356678999999999999999876422 3788899999999999998777888888887665 456899999998665 4
Q ss_pred ccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 306 HANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 306 ~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
..+...+++++.++|||||.+++..+
T Consensus 106 ~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 106 LPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 55889999999999999999999865
No 23
>PRK08317 hypothetical protein; Provisional
Probab=99.40 E-value=3.7e-12 Score=126.81 Aligned_cols=106 Identities=28% Similarity=0.329 Sum_probs=88.9
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
+.++.+|||+|||+|.++..+++.......+.++|+++.+++.|+++ ..++.+...|+..+++++++||+|++..+
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 96 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRV 96 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEech
Confidence 34566799999999999999987642223788899999999999876 34567788888888888899999999988
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
++|+. ++..+++++.++|+|||++++..+.
T Consensus 97 ~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 97 LQHLE-DPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred hhccC-CHHHHHHHHHHHhcCCcEEEEEecC
Confidence 87776 8999999999999999999998753
No 24
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.40 E-value=3.1e-12 Score=126.27 Aligned_cols=138 Identities=15% Similarity=0.220 Sum_probs=96.2
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEecccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h 304 (617)
+.+|||+|||+|.++.+|++++. .++++|+++.+++.++++ ++++.....+....+++ ++||+|+++.++++
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMF 106 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEeccccc
Confidence 34699999999999999998875 678889999999877643 55666777777666654 57999999987776
Q ss_pred cc-cchHHHHHHHHHhccCCeEEEEEeCCC---CCC--CCCChhhHHHHHHHHHHcCceEEEEeeeeEEEeecc
Q 039518 305 WH-ANDGILLKEVDRVLRPNGYFVYSAPPA---YRK--DKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEE 372 (617)
Q Consensus 305 ~~-~d~~~~L~el~RvLrPGG~Liis~p~~---~~~--~~~~~~~W~~le~La~~~gw~~v~~~~~~~IwqKp~ 372 (617)
+. ++...+++++.|+|+|||++++..-.. ... ........+++.++.. +|+.+........|.+..
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e~~~~~~~~~ 178 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNEAVGELHATD 178 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeecccccccccc
Confidence 65 346789999999999999966543110 000 0111222344555543 588888765555555543
No 25
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.39 E-value=3.9e-12 Score=134.47 Aligned_cols=131 Identities=17% Similarity=0.057 Sum_probs=96.5
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHH--h----CCCcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALE--R----GIGAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~e--r----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
++++|||||||+|.++..++..+.. .+.++|.++.++..+.. + ...+.+..++++++|.. .+||+|+|+.+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv 197 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGV 197 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcch
Confidence 4567999999999999999888764 57888999988765432 1 22456677788888764 47999999998
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCC-----CCC----------hhhHHHHHHHHHHcCceEEEEe
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKD-----KDY----------PLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~-----~~~----------~~~W~~le~La~~~gw~~v~~~ 362 (617)
++|+. ++..+|++++|+|||||.|++.+....... +.. ...-..+...++++||+.+...
T Consensus 198 L~H~~-dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~ 272 (314)
T TIGR00452 198 LYHRK-SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRIL 272 (314)
T ss_pred hhccC-CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEE
Confidence 88875 899999999999999999999753221111 000 0012347888999999988643
No 26
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.38 E-value=4.9e-12 Score=130.59 Aligned_cols=134 Identities=16% Similarity=0.084 Sum_probs=99.7
Q ss_pred cCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEec
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
+.++.+|||+|||+|..+..+++. +.. ..++++|+++.+++.|+++ +. ++.+..++++.+++++++||+|+++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~-~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPT-GKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence 456778999999999887766654 332 2678899999999999875 33 4677788899999988999999988
Q ss_pred ccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCC--------------ChhhHHHHHHHHHHcCceEEEE
Q 039518 300 RCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKD--------------YPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 300 ~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~--------------~~~~W~~le~La~~~gw~~v~~ 361 (617)
.++++ ..+...+++++.|+|||||.|++++.......+. ......++.++++..||..+..
T Consensus 154 ~v~~~-~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 154 CVINL-SPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred CcccC-CCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEE
Confidence 65544 4578899999999999999999986422111110 0012345778888889987753
No 27
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.37 E-value=5.6e-12 Score=127.83 Aligned_cols=102 Identities=17% Similarity=0.111 Sum_probs=83.2
Q ss_pred CCCeEEEECCCCcHHHHHhccCC-CcEEEeeecCCcHHHHHHHHHh------CCCcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLD-IQTMSFAPKDGHENQIQFALER------GIGAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~g-v~~v~v~~iDis~~~lq~A~er------g~~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
++.+|||+|||+|.++..++++. .....++++|+++.|++.|+++ ..++.+..+|+..++++ .+|+|+++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 55679999999999999888752 1234788999999999999876 23467888898888865 489999988
Q ss_pred cccccc-cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 301 CRVDWH-ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 301 ~l~h~~-~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+++++. ++...++++++|+|+|||.++++++
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 777765 3467899999999999999999875
No 28
>PRK05785 hypothetical protein; Provisional
Probab=99.37 E-value=2.6e-12 Score=129.93 Aligned_cols=90 Identities=24% Similarity=0.202 Sum_probs=77.5
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHAN 308 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d 308 (617)
+.+|||||||||.++..++++. ...++++|+|++|++.|+++. ...+++++.+|+++++||+|+++.+++|+. +
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~-d 125 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHASD-N 125 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecChhhccC-C
Confidence 4579999999999999998874 127889999999999998763 356788999999999999999999876654 8
Q ss_pred hHHHHHHHHHhccCCe
Q 039518 309 DGILLKEVDRVLRPNG 324 (617)
Q Consensus 309 ~~~~L~el~RvLrPGG 324 (617)
+..+++|+.|+|||.+
T Consensus 126 ~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 126 IEKVIAEFTRVSRKQV 141 (226)
T ss_pred HHHHHHHHHHHhcCce
Confidence 9999999999999953
No 29
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.36 E-value=2.2e-12 Score=121.75 Aligned_cols=102 Identities=24% Similarity=0.419 Sum_probs=84.5
Q ss_pred CCCeEEEECCCCcHHHHHhcc-CCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCC--CCCCCeeEEEec
Q 039518 228 GVFQVLDVGCGVASFSAFLLP-LDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLP--YPSSSFEMVHCS 299 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~-~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lp--f~d~sFDlV~~s 299 (617)
.+.+|||+|||+|.++..|++ .+.. ..++++|+++.+++.|+++ +. ++.+.++|+.+++ ++ +.||+|++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~-~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPG-AKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTT-SEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCC-CEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 456799999999999999994 4332 3688999999999999884 44 4889999998887 66 789999998
Q ss_pred ccccccccchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 300 RCRVDWHANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 300 ~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
.+++++. ++..+++++.++|++||.++++.+.
T Consensus 81 ~~l~~~~-~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFP-DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTS-HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhhcc-CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 7775554 8889999999999999999998753
No 30
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.36 E-value=4e-12 Score=129.92 Aligned_cols=103 Identities=16% Similarity=0.128 Sum_probs=82.4
Q ss_pred CCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEec
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
.++.+|||||||+|..+..+++. ......++++|+++.|++.|+++ +. ++.+..+++..+|++ .+|+|+++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~ 132 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLN 132 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehh
Confidence 46678999999999999888763 11223788999999999999876 22 577888888888764 48999998
Q ss_pred cccccccc-chHHHHHHHHHhccCCeEEEEEeC
Q 039518 300 RCRVDWHA-NDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 300 ~~l~h~~~-d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.+++++.. +...++++++++|||||.|++++.
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 87777652 346799999999999999999874
No 31
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.36 E-value=4e-12 Score=125.31 Aligned_cols=201 Identities=15% Similarity=0.161 Sum_probs=145.1
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~ 306 (617)
....+|.|+|||+|..+..|+++-..+ .|+++|.|.+|++.|+++.+++.+..+|+.... ++..+|+++++ ..+||.
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A-~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaN-AvlqWl 105 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDA-VITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFAN-AVLQWL 105 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCC-eEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhh-hhhhhc
Confidence 344569999999999999999986654 789999999999999999999999999988775 56789999976 577899
Q ss_pred cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEeeeeEEEeeccc--hhhhhhcccCc
Q 039518 307 ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEEN--QSCLLHNADLK 384 (617)
Q Consensus 307 ~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~~~~~IwqKp~~--~~C~~~r~~~~ 384 (617)
+|...+|..+...|.|||.|.+..|. +...+.+. -|.+.+++.-|......... ..++.- ...|....
T Consensus 106 pdH~~ll~rL~~~L~Pgg~LAVQmPd-N~depsH~----~mr~~A~~~p~~~~l~~~~~--~r~~v~s~a~Yy~lLa--- 175 (257)
T COG4106 106 PDHPELLPRLVSQLAPGGVLAVQMPD-NLDEPSHR----LMRETADEAPFAQELGGRGL--TRAPLPSPAAYYELLA--- 175 (257)
T ss_pred cccHHHHHHHHHhhCCCceEEEECCC-ccCchhHH----HHHHHHhcCchhhhhCcccc--ccCCCCCHHHHHHHhC---
Confidence 89999999999999999999998873 33323222 37777777666654432222 234433 34444332
Q ss_pred cCCccccCCCCCCcccccccccccccccccCCCCCCCCCCccccCCccccccccCccccccchhhHHHHHHHHHHhcc
Q 039518 385 LIDVCDAVDEFKPSWNTPLGNCVQISSAQTNSQKLPPRPERLSVYSESLSRIGITQEEFTTDTSFWQDQVRHYWQLMN 462 (617)
Q Consensus 385 ~p~lC~~~~d~~~~WY~~L~~c~~~~~~~~~~~~~~~wp~rl~~~p~~~~~~~~~~~~f~~d~~~w~~~v~~y~~~~~ 462 (617)
+.-|. -+-..+.+|++|..-- +..+++.+..+.+|=+|| |.+.|+.-.+.|...|.
T Consensus 176 -~~~~r-vDiW~T~Y~h~l~~a~-aIvdWvkgTgLrP~L~~L-------------------~e~~~~~FL~~Y~~~l~ 231 (257)
T COG4106 176 -PLACR-VDIWHTTYYHQLPGAD-AIVDWVKGTGLRPYLDRL-------------------DEEERQRFLDRYLALLA 231 (257)
T ss_pred -cccce-eeeeeeeccccCCCcc-chhhheeccccceecccc-------------------CHHHHHHHHHHHHHHHH
Confidence 22343 3455577888775543 234566666677665555 45678888889998876
No 32
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.36 E-value=3.7e-12 Score=131.76 Aligned_cols=132 Identities=13% Similarity=0.213 Sum_probs=93.9
Q ss_pred CcccCChhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcH----HHHHhccCCC----cEEEeeecCCcHHHHHHHHH
Q 039518 200 THFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVAS----FSAFLLPLDI----QTMSFAPKDGHENQIQFALE 271 (617)
Q Consensus 200 t~F~~~a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~----~a~~La~~gv----~~v~v~~iDis~~~lq~A~e 271 (617)
|.|.+....+......+++.........++.+|||+|||+|. ++..|++... ....|.++|+++.+++.|++
T Consensus 71 T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~ 150 (264)
T smart00138 71 TRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARA 150 (264)
T ss_pred CcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHc
Confidence 445455554443333334322222223345789999999995 5656655432 13589999999999999987
Q ss_pred hC--------------------------------CCcEEEEecCCCCCCCCCCeeEEEecccccccc-cchHHHHHHHHH
Q 039518 272 RG--------------------------------IGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH-ANDGILLKEVDR 318 (617)
Q Consensus 272 rg--------------------------------~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~-~d~~~~L~el~R 318 (617)
.- ..+.+.+.|+...++++++||+|+|.++++++. ++...+++++++
T Consensus 151 ~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~ 230 (264)
T smart00138 151 GIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAE 230 (264)
T ss_pred CCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHH
Confidence 42 136777888888887788999999999888886 345679999999
Q ss_pred hccCCeEEEEEeC
Q 039518 319 VLRPNGYFVYSAP 331 (617)
Q Consensus 319 vLrPGG~Liis~p 331 (617)
+|+|||+|++...
T Consensus 231 ~L~pGG~L~lg~~ 243 (264)
T smart00138 231 ALKPGGYLFLGHS 243 (264)
T ss_pred HhCCCeEEEEECc
Confidence 9999999999653
No 33
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.36 E-value=3.3e-12 Score=128.60 Aligned_cols=107 Identities=20% Similarity=0.218 Sum_probs=90.3
Q ss_pred CcccCCCCeEEEECCCCcHHHHHhccCCCc-----EEEeeecCCcHHHHHHHHHhC----C----CcEEEEecCCCCCCC
Q 039518 223 NLRSAGVFQVLDVGCGVASFSAFLLPLDIQ-----TMSFAPKDGHENQIQFALERG----I----GAMISALSTKQLPYP 289 (617)
Q Consensus 223 ~lr~~~g~rVLDIGCGtG~~a~~La~~gv~-----~v~v~~iDis~~~lq~A~erg----~----~~~~~~~d~~~Lpf~ 289 (617)
.+....++++||++||||-++..+.+.-.. ...++..|+++.|+..+++|. . .+.+..+|+++|||+
T Consensus 95 ~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFd 174 (296)
T KOG1540|consen 95 KLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFD 174 (296)
T ss_pred ccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCC
Confidence 455567789999999999999988875221 246778899999999888763 2 267788899999999
Q ss_pred CCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 290 SSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 290 d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+.+||+.+.++.+-.++ ++.+.|+|++|||||||+|.+-.
T Consensus 175 d~s~D~yTiafGIRN~t-h~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIRNVT-HIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred CCcceeEEEecceecCC-CHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999999999888887 89999999999999999999865
No 34
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.34 E-value=3.8e-12 Score=131.83 Aligned_cols=96 Identities=23% Similarity=0.359 Sum_probs=80.5
Q ss_pred CCeEEEECCCCcHHHHHhccCCCc--EEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQ--TMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~--~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~ 306 (617)
..+|||+|||+|.++..|++.... ...+.++|+|+.+++.|.++..++.+.++|+.++|+++++||+|++..+ .
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~----~ 161 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA----P 161 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----C
Confidence 456999999999999998765321 2367899999999999998887888999999999999999999997642 1
Q ss_pred cchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 307 ANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 307 ~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
..+.++.|+|||||+|++..|.
T Consensus 162 ----~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 162 ----CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred ----CCHHHHHhhccCCCEEEEEeCC
Confidence 2468999999999999998874
No 35
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.34 E-value=7.5e-12 Score=124.94 Aligned_cols=101 Identities=25% Similarity=0.315 Sum_probs=86.8
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC-CcEEEEecCCCCCCCCCCeeEEEeccccccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI-GAMISALSTKQLPYPSSSFEMVHCSRCRVDWHA 307 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~ 307 (617)
+.+|||+|||+|.++..+++.+... .++++|+++.+++.++++.. ++.+..+|+..+++++++||+|+++.++++. .
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~-~ 112 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQA-EFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWC-D 112 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCC-cEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhc-c
Confidence 4679999999999999998876533 67889999999998888743 4678888999999888999999999876554 5
Q ss_pred chHHHHHHHHHhccCCeEEEEEeC
Q 039518 308 NDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 308 d~~~~L~el~RvLrPGG~Liis~p 331 (617)
++..++.++.++|+|||.++++++
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeC
Confidence 899999999999999999999875
No 36
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.32 E-value=1.7e-11 Score=122.62 Aligned_cols=129 Identities=19% Similarity=0.226 Sum_probs=96.3
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEecccccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h 304 (617)
+|||||||+|.++..+++.... ..++++|+++.+++.|+++ +. .+.+...|....|++ ++||+|++..+++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~-~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPH-LQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 5999999999999999876432 3678889999999988875 22 357777787666664 57999999888877
Q ss_pred cccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCC-------ChhhHHHHHHHHHHcCceEEEEe
Q 039518 305 WHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKD-------YPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 305 ~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~-------~~~~W~~le~La~~~gw~~v~~~ 362 (617)
+. ++..+++++.++|+|||++++.++........ ....-.++.+++++.||+++...
T Consensus 80 ~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 80 IK-DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred CC-CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 65 78999999999999999999987532111100 00112347778888999987643
No 37
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.31 E-value=2.1e-12 Score=113.49 Aligned_cols=93 Identities=24% Similarity=0.384 Sum_probs=74.7
Q ss_pred EEEECCCCcHHHHHhccCCC--cEEEeeecCCcHHHHHHHHHhC----CCcEEEEecCCCCCCCCCCeeEEEeccc-ccc
Q 039518 232 VLDVGCGVASFSAFLLPLDI--QTMSFAPKDGHENQIQFALERG----IGAMISALSTKQLPYPSSSFEMVHCSRC-RVD 304 (617)
Q Consensus 232 VLDIGCGtG~~a~~La~~gv--~~v~v~~iDis~~~lq~A~erg----~~~~~~~~d~~~Lpf~d~sFDlV~~s~~-l~h 304 (617)
|||+|||+|..+..+++... ....+.++|+++.+++.++++. .++.+.+.|+.++++.+++||+|+|+.. ++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 79999999999999987631 1147889999999999998874 6889999999999988899999999655 666
Q ss_pred cc-cchHHHHHHHHHhccCCe
Q 039518 305 WH-ANDGILLKEVDRVLRPNG 324 (617)
Q Consensus 305 ~~-~d~~~~L~el~RvLrPGG 324 (617)
+. ++...+++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 54 345779999999999998
No 38
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.30 E-value=3.4e-12 Score=129.28 Aligned_cols=97 Identities=23% Similarity=0.340 Sum_probs=79.4
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC--C---------cEEEEecCCCCCCCCCCeeEEE
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI--G---------AMISALSTKQLPYPSSSFEMVH 297 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~--~---------~~~~~~d~~~Lpf~d~sFDlV~ 297 (617)
|++|||+|||+|.++..|++.|. .|+++|+++.+++.|+++.. | +.+...+.+.+ .+.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceee
Confidence 57899999999999999999986 67888999999999998721 1 12223333333 24599999
Q ss_pred ecccccccccchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 298 CSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 298 ~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
|+.+++|.. |+..++..+.++|||||.++|++-+
T Consensus 164 csevleHV~-dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 164 CSEVLEHVK-DPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred eHHHHHHHh-CHHHHHHHHHHHhCCCCceEeeehh
Confidence 999999876 8999999999999999999999753
No 39
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.30 E-value=1.4e-11 Score=128.02 Aligned_cols=105 Identities=21% Similarity=0.317 Sum_probs=78.8
Q ss_pred ccCCcccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecCCCCCCCCCC
Q 039518 220 ETGNLRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----GIG--AMISALSTKQLPYPSSS 292 (617)
Q Consensus 220 ~~~~lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~~~Lpf~d~s 292 (617)
...++++++|.+|||||||.|.++.+++++ |+ .++++.+|+++.+.|+++ |+. +.+...|..+++. +
T Consensus 54 ~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~---~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~ 127 (273)
T PF02353_consen 54 LCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC---HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---K 127 (273)
T ss_dssp HHTTTT--TT-EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---C
Confidence 345678899999999999999999999998 65 567778999999988765 543 6777777776653 8
Q ss_pred eeEEEecccccccc-cchHHHHHHHHHhccCCeEEEEEe
Q 039518 293 FEMVHCSRCRVDWH-ANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 293 FDlV~~s~~l~h~~-~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
||.|++..++.|+. ++...+++++.++|+|||.+++..
T Consensus 128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp -SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 99999999999986 567899999999999999998753
No 40
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.30 E-value=2.1e-11 Score=127.44 Aligned_cols=97 Identities=14% Similarity=0.247 Sum_probs=79.1
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEeccccccc
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCRVDW 305 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~ 305 (617)
.+|||+|||+|.++.+|++++. .++++|+++.+++.++++ ++++.+...|+...++ +++||+|+++.++++.
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 4699999999999999998875 678889999999877654 5667777777766655 6789999998877665
Q ss_pred c-cchHHHHHHHHHhccCCeEEEEEe
Q 039518 306 H-ANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 306 ~-~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
. ++...+++++.++|+|||++++..
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 4 356789999999999999977754
No 41
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.29 E-value=3.8e-11 Score=118.17 Aligned_cols=118 Identities=20% Similarity=0.201 Sum_probs=93.2
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
++.+|||+|||+|.++..++.+.. ...++++|+++.+++.|+++ +. ++.+..++++.++. +++||+|++..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-- 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-- 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc--
Confidence 367899999999999998886533 23788899999999888764 44 37788888888776 77999999863
Q ss_pred cccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 303 VDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 303 ~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
+ .+...++.+++++|||||.+++..+... -.+++.+++..||.+...
T Consensus 121 --~-~~~~~~l~~~~~~LkpGG~lv~~~~~~~---------~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 121 --V-ASLSDLVELCLPLLKPGGRFLALKGRDP---------EEEIAELPKALGGKVEEV 167 (187)
T ss_pred --c-cCHHHHHHHHHHhcCCCeEEEEEeCCCh---------HHHHHHHHHhcCceEeee
Confidence 2 3678899999999999999999864211 345888999999997763
No 42
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.29 E-value=6.3e-11 Score=133.09 Aligned_cols=291 Identities=11% Similarity=0.089 Sum_probs=158.6
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
+.+|||+|||+|.++..++..... ..++++|+|+.+++.|+++ ++ .+.+..+|... ++++++||+|+|+--.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~-~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPN-ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 457999999999999988865322 3678899999999999876 33 35566666432 2345689999986321
Q ss_pred cccc---------------------cc----hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCce
Q 039518 303 VDWH---------------------AN----DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWK 357 (617)
Q Consensus 303 ~h~~---------------------~d----~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~ 357 (617)
+... ++ ...++.++.++|+|||.+++.... .. -+.+.+++.+.||.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~------~q---~~~v~~~~~~~g~~ 287 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF------KQ---EEAVTQIFLDHGYN 287 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC------ch---HHHHHHHHHhcCCC
Confidence 1100 00 133677889999999999986531 11 34577888888887
Q ss_pred EEEEeeeeEEEeeccchhhhhhcccCccCCccccCCCCCCcccccccccccccccccCCCCCCCCCCcc-ccCCcccccc
Q 039518 358 LIARKIQTAIWIKEENQSCLLHNADLKLIDVCDAVDEFKPSWNTPLGNCVQISSAQTNSQKLPPRPERL-SVYSESLSRI 436 (617)
Q Consensus 358 ~v~~~~~~~IwqKp~~~~C~~~r~~~~~p~lC~~~~d~~~~WY~~L~~c~~~~~~~~~~~~~~~wp~rl-~~~p~~~~~~ 436 (617)
.+....+.. +. + ..-...+.++........+..+.+=.+++ ...-|. .
T Consensus 288 ~~~~~~D~~------g~-----------~-----------R~v~~~~~~~~rs~~rr~g~~~~~~q~~~~e~~~p~---~ 336 (506)
T PRK01544 288 IESVYKDLQ------GH-----------S-----------RVILISPINLNRSYARRIGKSLSGVQQNLLDNELPK---Y 336 (506)
T ss_pred ceEEEecCC------CC-----------c-----------eEEEeccccCCcceeccCCCCCCHHHHHHHHhhhhh---h
Confidence 654322210 00 0 00011111121110000000000000000 000011 1
Q ss_pred ccCccccccchhhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccC----CCeEEEEeccCCCCchhHHHHhhcc
Q 039518 437 GITQEEFTTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNS----LPVWVMNIVPISMKNTLSAIYNRGI 512 (617)
Q Consensus 437 ~~~~~~f~~d~~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~----~~v~vmnv~p~~~~~~l~~~~~RGl 512 (617)
+++.+. +-...-..++|+|||.|.|.+.+.. .+++-|=+-.......+..+.++||
T Consensus 337 ~i~~ek--------------------lf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l 396 (506)
T PRK01544 337 LFSKEK--------------------LVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI 396 (506)
T ss_pred CCCHHH--------------------hCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC
Confidence 111110 1122358899999999999998853 2344443333222245566677776
Q ss_pred cccccccCCCC----CCCC-Cccchhhcccccc-cc-c--cCCCCCChhhHHhhhhhcccCCceEEEe-cChHHHHHHHh
Q 039518 513 LGAFHDWCEPF----STYP-RTYDLLHANHLFS-HY-K--NRGEVCSLEDIMLEMDLIIRPQGFIIIR-DEKSLITRIRD 582 (617)
Q Consensus 513 ig~~~~~~~~f----~typ-rtyDl~H~~~~~s-~~-~--~~~~~c~~~~~l~e~dRilRP~G~~i~~-d~~~~~~~~~~ 582 (617)
-.+ .-.|..+ .-+| .+.|-|| -.|. -| | ..+.|=--...|-++-|+|+|||.+.++ |..+..+.+.+
T Consensus 397 ~N~-~~~~~~~~~~~~~~~~~sv~~i~--i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~ 473 (506)
T PRK01544 397 TNF-LLFPNNLDLILNDLPNNSLDGIY--ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIE 473 (506)
T ss_pred CeE-EEEcCCHHHHHHhcCcccccEEE--EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH
Confidence 222 1122221 2244 7777777 2333 22 1 1233333358899999999999998886 66655555444
Q ss_pred hh
Q 039518 583 LA 584 (617)
Q Consensus 583 ~~ 584 (617)
..
T Consensus 474 ~~ 475 (506)
T PRK01544 474 LI 475 (506)
T ss_pred HH
Confidence 43
No 43
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.27 E-value=9e-11 Score=117.42 Aligned_cols=103 Identities=23% Similarity=0.238 Sum_probs=85.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC------CCcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG------IGAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg------~~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
++.+|||+|||+|.++..+++.......+.++|+++.+++.++++. .++.+...|+..+++++++||+|+++.+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 4568999999999999999887632347889999999999988762 3467778888888887889999999887
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
++++. ++..++.++.++|+|||.+++.+.
T Consensus 131 l~~~~-~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 131 LRNVP-DIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred cccCC-CHHHHHHHHHHhccCCcEEEEEEe
Confidence 76655 789999999999999999988754
No 44
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.27 E-value=2.3e-11 Score=119.03 Aligned_cols=125 Identities=19% Similarity=0.254 Sum_probs=94.5
Q ss_pred CCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecC-CCCC-CCCCCeeEEEeccccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALST-KQLP-YPSSSFEMVHCSRCRV 303 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~-~~Lp-f~d~sFDlV~~s~~l~ 303 (617)
.+|.||||+|||.|.+..+|.+. ++ ...++|++++.+..+.++|+++ .++|+ +.|+ |++++||.|+++.++.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v---~g~GvEid~~~v~~cv~rGv~V--iq~Dld~gL~~f~d~sFD~VIlsqtLQ 86 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQV---DGYGVEIDPDNVAACVARGVSV--IQGDLDEGLADFPDQSFDYVILSQTLQ 86 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCC---eEEEEecCHHHHHHHHHcCCCE--EECCHHHhHhhCCCCCccEEehHhHHH
Confidence 45678999999999999999874 44 5567799999999999999874 45554 3454 8999999999999887
Q ss_pred ccccchHHHHHHHHHhccCCeEEEEEeCCCC-CCC----------C---CChh-----------hHHHHHHHHHHcCceE
Q 039518 304 DWHANDGILLKEVDRVLRPNGYFVYSAPPAY-RKD----------K---DYPL-----------IWDKLVNLTTAMCWKL 358 (617)
Q Consensus 304 h~~~d~~~~L~el~RvLrPGG~Liis~p~~~-~~~----------~---~~~~-----------~W~~le~La~~~gw~~ 358 (617)
+.. +|..+|.|+.|+ |...+++-|+.. |.. | ..+. ....++.++++.|+++
T Consensus 87 ~~~-~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I 162 (193)
T PF07021_consen 87 AVR-RPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRI 162 (193)
T ss_pred hHh-HHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEE
Confidence 776 899999999776 668888887642 111 0 0111 1233888888888887
Q ss_pred EE
Q 039518 359 IA 360 (617)
Q Consensus 359 v~ 360 (617)
+.
T Consensus 163 ~~ 164 (193)
T PF07021_consen 163 EE 164 (193)
T ss_pred EE
Confidence 76
No 45
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.26 E-value=8e-11 Score=116.56 Aligned_cols=103 Identities=21% Similarity=0.261 Sum_probs=86.7
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCCCCCCCCCCeeEEEecccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---IGAMISALSTKQLPYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h 304 (617)
++.+|||+|||+|.++..+++.......+.++|+++.+++.++++. .++.+..+++.++++++++||+|+++..+++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~ 118 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRN 118 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCC
Confidence 5678999999999999999887653247888999999999988864 2467888888888888889999999877666
Q ss_pred cccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 305 WHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 305 ~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.. ++..+++++.++|+|||++++.+.
T Consensus 119 ~~-~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 119 VT-DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred cc-cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 54 789999999999999999998764
No 46
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.24 E-value=3.7e-11 Score=119.76 Aligned_cols=99 Identities=17% Similarity=0.123 Sum_probs=81.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccc-
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH- 306 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~- 306 (617)
++.+|||||||+|.++..|++... ...++++|+++.+++.|+++...+.+..+++.. |+++++||+|+++.+++|+.
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCCH
Confidence 455699999999999999987622 237889999999999999876667778888777 88899999999999888876
Q ss_pred cchHHHHHHHHHhccCCeEEEEEe
Q 039518 307 ANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 307 ~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
++...+++++.|++ +++++++.
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEE
Confidence 34578999999998 56787765
No 47
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.23 E-value=5.4e-11 Score=116.64 Aligned_cols=122 Identities=23% Similarity=0.373 Sum_probs=89.8
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh-----CCCcE-EEEecCCCCC-CCCCCeeEEEeccccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER-----GIGAM-ISALSTKQLP-YPSSSFEMVHCSRCRV 303 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er-----g~~~~-~~~~d~~~Lp-f~d~sFDlV~~s~~l~ 303 (617)
.|||||||||..-.++--. ...+++.+|.++.|-++|.++ ..++. +++++.+++| ++++++|.|+|..++.
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC 156 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC 156 (252)
T ss_pred ceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence 4899999999776555422 223788899999998887654 23344 7888999998 8999999999999887
Q ss_pred ccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 304 DWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 304 h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
... ++.+.|+|+.|+|||||.+++..... .+.. .|..+-+-...--|+.+.
T Consensus 157 Sve-~~~k~L~e~~rlLRpgG~iifiEHva---~~y~--~~n~i~q~v~ep~~~~~~ 207 (252)
T KOG4300|consen 157 SVE-DPVKQLNEVRRLLRPGGRIIFIEHVA---GEYG--FWNRILQQVAEPLWHLES 207 (252)
T ss_pred ccC-CHHHHHHHHHHhcCCCcEEEEEeccc---ccch--HHHHHHHHHhchhhheec
Confidence 754 99999999999999999999975321 1222 366644443333455554
No 48
>PRK06922 hypothetical protein; Provisional
Probab=99.22 E-value=3.4e-11 Score=136.38 Aligned_cols=103 Identities=17% Similarity=0.110 Sum_probs=85.2
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCC--CCCCCeeEEEeccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLP--YPSSSFEMVHCSRC 301 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lp--f~d~sFDlV~~s~~ 301 (617)
++.+|||+|||+|.++..+++... ...+.++|+++.|++.|+++ +.++.+..+|..++| +++++||+|+++.+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 567899999999999988887643 23788999999999998875 345667778888887 78899999999887
Q ss_pred ccccc------------cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 302 RVDWH------------ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 302 l~h~~------------~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
++++. ++...+|+++.|+|||||.+++.+.
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 77652 2467899999999999999999874
No 49
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.21 E-value=2.8e-12 Score=111.90 Aligned_cols=92 Identities=26% Similarity=0.387 Sum_probs=58.2
Q ss_pred EEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----C-CCcEEEEecCCCCC-C-CCCCeeEEEeccccccc
Q 039518 233 LDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----G-IGAMISALSTKQLP-Y-PSSSFEMVHCSRCRVDW 305 (617)
Q Consensus 233 LDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g-~~~~~~~~d~~~Lp-f-~d~sFDlV~~s~~l~h~ 305 (617)
||||||+|.++..+++.. ....++++|+|+.+++.|+++ . ...........+.. . ..++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999998875 445889999999999766655 2 12222222222221 1 23599999999988887
Q ss_pred ccchHHHHHHHHHhccCCeEE
Q 039518 306 HANDGILLKEVDRVLRPNGYF 326 (617)
Q Consensus 306 ~~d~~~~L~el~RvLrPGG~L 326 (617)
+++..+++.+.++|+|||.|
T Consensus 80 -~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred -hhHHHHHHHHHHHcCCCCCC
Confidence 68999999999999999986
No 50
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.20 E-value=1.9e-10 Score=119.22 Aligned_cols=105 Identities=17% Similarity=0.286 Sum_probs=86.2
Q ss_pred cCCcccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecCCCCCCCCCCe
Q 039518 221 TGNLRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----GIG--AMISALSTKQLPYPSSSF 293 (617)
Q Consensus 221 ~~~lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~~~Lpf~d~sF 293 (617)
..++.+.+|++|||||||.|.++.+++++ ++ .++++++|++|.+.++++ |.+ +.+...|..++ .+.|
T Consensus 65 ~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v---~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~---~e~f 138 (283)
T COG2230 65 LEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGV---TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF---EEPF 138 (283)
T ss_pred HHhcCCCCCCEEEEeCCChhHHHHHHHHHcCC---EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc---cccc
Confidence 35678899999999999999999999998 45 567779999999888875 554 55555555444 3559
Q ss_pred eEEEecccccccc-cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 294 EMVHCSRCRVDWH-ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 294 DlV~~s~~l~h~~-~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
|-|++..+++|+. ++...++..++++|+|||.+++-+-
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I 177 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSI 177 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEe
Confidence 9999999999987 4578899999999999999998654
No 51
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.19 E-value=2.2e-10 Score=114.54 Aligned_cols=130 Identities=18% Similarity=0.261 Sum_probs=95.7
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC----C--CcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG----I--GAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg----~--~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||+|||+|.++..+++.+. .++++|+++.+++.|+++. . ++.+.+.|+..++ ++||+|++..
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~ 127 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMD 127 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhh
Confidence 3467899999999999999998754 6788899999999998762 2 5677888877765 7899999998
Q ss_pred cccccc-cchHHHHHHHHHhccCCeEEEEEeCCC----------CCCCC-----CChhhHHHHHHHHHHcCceEEEEe
Q 039518 301 CRVDWH-ANDGILLKEVDRVLRPNGYFVYSAPPA----------YRKDK-----DYPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 301 ~l~h~~-~d~~~~L~el~RvLrPGG~Liis~p~~----------~~~~~-----~~~~~W~~le~La~~~gw~~v~~~ 362 (617)
+++|+. ++...++.++.+++++++++.+..... .+... .....-++++++++.+||+++..+
T Consensus 128 ~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 128 VLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREG 205 (219)
T ss_pred HHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeee
Confidence 888876 346789999999999887776642110 00000 011123458889999999988754
No 52
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.16 E-value=4.3e-10 Score=110.94 Aligned_cols=99 Identities=13% Similarity=0.266 Sum_probs=75.5
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHH----HHhCCCcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFA----LERGIGAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A----~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
++.++||+|||.|..+.+|+++|. +|+++|.|+..++.+ .++++++.....|+....++ +.||+|++..++.
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~ 105 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFM 105 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGG
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEec
Confidence 345799999999999999999998 567779998877654 44688888899998887765 6799999876666
Q ss_pred ccc-cchHHHHHHHHHhccCCeEEEEEe
Q 039518 304 DWH-ANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 304 h~~-~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+.. +....++..+...++|||++++.+
T Consensus 106 fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 106 FLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp GS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 655 335678999999999999998854
No 53
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.16 E-value=1.4e-10 Score=115.31 Aligned_cols=122 Identities=17% Similarity=0.218 Sum_probs=91.0
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----C-CCcEEEEecC-CCCC--CCCCCeeEEEec
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----G-IGAMISALST-KQLP--YPSSSFEMVHCS 299 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g-~~~~~~~~d~-~~Lp--f~d~sFDlV~~s 299 (617)
++.+|||+|||+|.++..+++.... ..++++|+++.+++.|+++ + .++.+..+|+ +.++ +++++||+|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~-~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPD-INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCC-ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 3456999999999999999876433 3788999999999988764 3 3577888888 7776 778899999987
Q ss_pred cccccccc--------chHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEE
Q 039518 300 RCRVDWHA--------NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLI 359 (617)
Q Consensus 300 ~~l~h~~~--------d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v 359 (617)
... +|.. ....+++++.++|||||.|+++.+. ......+.+.++..||+..
T Consensus 119 ~~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~--------~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 119 FPD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW--------EGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC--------HHHHHHHHHHHHhCccccc
Confidence 532 3321 1467899999999999999998642 1123346666777787655
No 54
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.16 E-value=3.4e-10 Score=110.76 Aligned_cols=120 Identities=14% Similarity=0.189 Sum_probs=84.1
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
+.+|||+|||+|.++..++..... ..++++|.++.+++.++++ +. ++.+..+|+++++ .+++||+|++.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~-~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~- 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPE-LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L- 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h-
Confidence 567999999999999988765432 3688899999988776543 44 4778888887764 367899999753 2
Q ss_pred ccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 304 DWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 304 h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
. +...+++.+.++|+|||.+++.... .....+..+.+-+...|++.+..
T Consensus 119 --~-~~~~~~~~~~~~LkpgG~lvi~~~~------~~~~~~~~~~e~~~~~~~~~~~~ 167 (181)
T TIGR00138 119 --A-SLNVLLELTLNLLKVGGYFLAYKGK------KYLDEIEEAKRKCQVLGVEPLEV 167 (181)
T ss_pred --h-CHHHHHHHHHHhcCCCCEEEEEcCC------CcHHHHHHHHHhhhhcCceEeec
Confidence 2 5667889999999999999986431 11111222333333467776653
No 55
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.15 E-value=2e-10 Score=115.35 Aligned_cols=100 Identities=12% Similarity=-0.009 Sum_probs=79.3
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHH-hC----------------CCcEEEEecCCCCCCC-
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALE-RG----------------IGAMISALSTKQLPYP- 289 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~e-rg----------------~~~~~~~~d~~~Lpf~- 289 (617)
++.+|||+|||.|..+.+|+++|. +|+++|+|+.+++.+.+ ++ ..+.+.++|+..++..
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 445799999999999999999987 57788999999997533 33 3467788888777642
Q ss_pred CCCeeEEEecccccccccc-hHHHHHHHHHhccCCeEEEEEe
Q 039518 290 SSSFEMVHCSRCRVDWHAN-DGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 290 d~sFDlV~~s~~l~h~~~d-~~~~L~el~RvLrPGG~Liis~ 330 (617)
.+.||.|+-..+++|++.+ ...++..+.++|||||++++.+
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 4579999988778887733 4669999999999999866653
No 56
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.15 E-value=6.9e-10 Score=107.70 Aligned_cols=121 Identities=11% Similarity=0.064 Sum_probs=90.6
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEecccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h 304 (617)
+.+|||+|||+|.++..+++++. .+.++|+++.+++.++++ +..+.+..+|....+ .++||+|+++...++
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCC
Confidence 34699999999999999998865 678889999999988775 455666777765543 458999999866554
Q ss_pred cccc--------------------hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEe
Q 039518 305 WHAN--------------------DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 305 ~~~d--------------------~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~ 362 (617)
.... ...++.++.++|+|||.+++..+... . -..+..++++.||......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~------~--~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN------G--EPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC------C--hHHHHHHHHhCCCeEEEEE
Confidence 4311 24579999999999999999864221 0 2347778888899877644
No 57
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.14 E-value=1.6e-10 Score=125.61 Aligned_cols=102 Identities=22% Similarity=0.314 Sum_probs=82.7
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhC--CCcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERG--IGAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg--~~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
+.+.++.+|||||||+|.++..+++. +. .++++|+|+.+++.|+++. ..+.+...|...+ +++||.|++..
T Consensus 163 l~l~~g~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~ 236 (383)
T PRK11705 163 LQLKPGMRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVG 236 (383)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeC
Confidence 44567889999999999999999875 43 6788899999999999874 3456666666554 47899999988
Q ss_pred cccccc-cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 301 CRVDWH-ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 301 ~l~h~~-~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+++|.. .+...+++++.++|||||++++...
T Consensus 237 ~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 237 MFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred chhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 777764 3467899999999999999999764
No 58
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.12 E-value=7.4e-10 Score=108.96 Aligned_cols=126 Identities=21% Similarity=0.210 Sum_probs=89.1
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCC-C-CCCCCCeeEEEeccccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQ-L-PYPSSSFEMVHCSRCRVDW 305 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~-L-pf~d~sFDlV~~s~~l~h~ 305 (617)
++.+|||+|||+|.++..+++... ..+.++|+++++++.|+++++ .+..+++.. + ++++++||+|+|+.+++|.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~~~~--~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~ 88 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVARGV--NVIQGDLDEGLEAFPDKSFDYVILSQTLQAT 88 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHHcCC--eEEEEEhhhcccccCCCCcCEEEEhhHhHcC
Confidence 345699999999999999876532 145788999999999987664 566677654 4 4778899999999887766
Q ss_pred ccchHHHHHHHHHhccCCeEEEEEeCCCC-----------------------CCCC--CChhhHHHHHHHHHHcCceEEE
Q 039518 306 HANDGILLKEVDRVLRPNGYFVYSAPPAY-----------------------RKDK--DYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 306 ~~d~~~~L~el~RvLrPGG~Liis~p~~~-----------------------~~~~--~~~~~W~~le~La~~~gw~~v~ 360 (617)
. ++..+|+++.|++++ .+++.|... +.+. ......+++.+++++.||+++.
T Consensus 89 ~-d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~ 164 (194)
T TIGR02081 89 R-NPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILD 164 (194)
T ss_pred c-CHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEE
Confidence 5 899999999887664 444433210 0000 0111245588899999999887
Q ss_pred E
Q 039518 361 R 361 (617)
Q Consensus 361 ~ 361 (617)
.
T Consensus 165 ~ 165 (194)
T TIGR02081 165 R 165 (194)
T ss_pred E
Confidence 3
No 59
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.12 E-value=8.3e-10 Score=111.20 Aligned_cols=131 Identities=18% Similarity=0.242 Sum_probs=97.4
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCC-CCCCCeeEEEecccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLP-YPSSSFEMVHCSRCR 302 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lp-f~d~sFDlV~~s~~l 302 (617)
++.+|||||||+|.++..+++.+. .++++|+++.+++.|+++ +..+.+...+...++ ..+++||+|+++.++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 466799999999999999988764 577889999999888765 444566666665554 345789999999877
Q ss_pred cccccchHHHHHHHHHhccCCeEEEEEeCCCCCCC---------------CCChhhH------HHHHHHHHHcCceEEEE
Q 039518 303 VDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKD---------------KDYPLIW------DKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 303 ~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~---------------~~~~~~W------~~le~La~~~gw~~v~~ 361 (617)
.+.. ++..+|.++.++|+|||.++++.+...... +.....| .++.++++..||+++..
T Consensus 125 ~~~~-~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~ 203 (233)
T PRK05134 125 EHVP-DPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDI 203 (233)
T ss_pred hccC-CHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeee
Confidence 7765 788999999999999999999875321100 0000011 24788899999998865
Q ss_pred e
Q 039518 362 K 362 (617)
Q Consensus 362 ~ 362 (617)
.
T Consensus 204 ~ 204 (233)
T PRK05134 204 T 204 (233)
T ss_pred e
Confidence 4
No 60
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.10 E-value=1.1e-09 Score=109.26 Aligned_cols=132 Identities=20% Similarity=0.242 Sum_probs=98.3
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCC-CCCeeEEEeccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYP-SSSFEMVHCSRC 301 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~-d~sFDlV~~s~~ 301 (617)
.+.+|||+|||+|.++..+++.+. .+.++|+++.+++.++++ +. ++.+...++..++.. .++||+|+++.+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 356799999999999999987764 477889999999888774 33 466777777666544 378999999887
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCC---------------CCChh------hHHHHHHHHHHcCceEEE
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKD---------------KDYPL------IWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~---------------~~~~~------~W~~le~La~~~gw~~v~ 360 (617)
+++.. ++..++.++.++|+|||.++++.+...... +.... ...++.+++++.||+++.
T Consensus 122 l~~~~-~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~ 200 (224)
T TIGR01983 122 LEHVP-DPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKD 200 (224)
T ss_pred HHhCC-CHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeee
Confidence 76654 889999999999999999999875321100 00000 123588889999999987
Q ss_pred Eee
Q 039518 361 RKI 363 (617)
Q Consensus 361 ~~~ 363 (617)
..+
T Consensus 201 ~~~ 203 (224)
T TIGR01983 201 VKG 203 (224)
T ss_pred eee
Confidence 654
No 61
>PRK06202 hypothetical protein; Provisional
Probab=99.10 E-value=4.4e-10 Score=113.49 Aligned_cols=101 Identities=16% Similarity=0.241 Sum_probs=78.5
Q ss_pred CCCCeEEEECCCCcHHHHHhccC----CCcEEEeeecCCcHHHHHHHHHhC--CCcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPL----DIQTMSFAPKDGHENQIQFALERG--IGAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~----gv~~v~v~~iDis~~~lq~A~erg--~~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||+|||+|.++..|++. +.. ..++++|+++.+++.|+++. .++.+.+.+...+++++++||+|+|+.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLR-LEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCC-cEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence 34567999999999998888642 332 37889999999999998873 245666677777777788999999999
Q ss_pred cccccccc-hHHHHHHHHHhccCCeEEEEEe
Q 039518 301 CRVDWHAN-DGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 301 ~l~h~~~d-~~~~L~el~RvLrPGG~Liis~ 330 (617)
+++|+.++ ...+++++.|+++ |.+++.+
T Consensus 138 ~lhh~~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 138 FLHHLDDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred eeecCChHHHHHHHHHHHHhcC--eeEEEec
Confidence 88887632 3579999999998 5555543
No 62
>PRK04266 fibrillarin; Provisional
Probab=99.09 E-value=1.5e-09 Score=109.94 Aligned_cols=133 Identities=8% Similarity=0.038 Sum_probs=89.6
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh---CCCcEEEEecCCCC----CCCCCCeeEE
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER---GIGAMISALSTKQL----PYPSSSFEMV 296 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er---g~~~~~~~~d~~~L----pf~d~sFDlV 296 (617)
+.+.++.+|||+|||+|.++..|++... ...+.++|+++.|++.+.++ ..++.+..+|+... +++ ++||+|
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i 145 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVI 145 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEE
Confidence 4566788999999999999999988632 22688889999888755433 13466667776531 223 569999
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEEeCC--CCCCCCCChhhHHHHHHHHHHcCceEEEEe
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPP--AYRKDKDYPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~--~~~~~~~~~~~W~~le~La~~~gw~~v~~~ 362 (617)
++... .+.....++.++.|+|||||.++++.+- ..+..+. ....+...+.++..||+.+...
T Consensus 146 ~~d~~---~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~-~~~~~~~~~~l~~aGF~~i~~~ 209 (226)
T PRK04266 146 YQDVA---QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDP-KEIFKEEIRKLEEGGFEILEVV 209 (226)
T ss_pred EECCC---ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCH-HHHHHHHHHHHHHcCCeEEEEE
Confidence 85421 1112245689999999999999997542 2222222 2233445688889999988754
No 63
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.09 E-value=7.2e-11 Score=117.36 Aligned_cols=135 Identities=17% Similarity=0.163 Sum_probs=98.9
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCC-C-CCCCCeeEEEeccccc
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQL-P-YPSSSFEMVHCSRCRV 303 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~L-p-f~d~sFDlV~~s~~l~ 303 (617)
..+-.++||+|||||..+..|..+-- .++++|+|++|++.|.++|.--.+.+++...+ + ..++.||+|++..++.
T Consensus 123 ~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~ 199 (287)
T COG4976 123 LGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLP 199 (287)
T ss_pred CCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHH
Confidence 33446799999999999999977632 68899999999999999988666666655433 2 3567899999988765
Q ss_pred ccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhh---H----HHHHHHHHHcCceEEEEeee
Q 039518 304 DWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLI---W----DKLVNLTTAMCWKLIARKIQ 364 (617)
Q Consensus 304 h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~---W----~~le~La~~~gw~~v~~~~~ 364 (617)
.. .+.+.++.-+...|+|||.|.+|+....-.......+ + .-+..+++..|++++..++.
T Consensus 200 Yl-G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 200 YL-GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred hh-cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecc
Confidence 54 4889999999999999999999964221111000000 1 11788899999999986543
No 64
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.09 E-value=2.2e-09 Score=113.79 Aligned_cols=125 Identities=17% Similarity=0.223 Sum_probs=84.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC----------CCcEEEEecCCCCCCCCCCeeEEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG----------IGAMISALSTKQLPYPSSSFEMVH 297 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg----------~~~~~~~~d~~~Lpf~d~sFDlV~ 297 (617)
++.+|||+|||+|.++..|++++. .++++|+++.|++.|+++. ..+.+...|++.+ +++||+|+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv 217 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVT 217 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEE
Confidence 356899999999999999998864 6788899999999998763 1245556665443 57899999
Q ss_pred ecccccccccch-HHHHHHHHHhccCCeEEEEEeCCCCCC------------CCC-----ChhhHHHHHHHHHHcCceEE
Q 039518 298 CSRCRVDWHAND-GILLKEVDRVLRPNGYFVYSAPPAYRK------------DKD-----YPLIWDKLVNLTTAMCWKLI 359 (617)
Q Consensus 298 ~s~~l~h~~~d~-~~~L~el~RvLrPGG~Liis~p~~~~~------------~~~-----~~~~W~~le~La~~~gw~~v 359 (617)
|..+++|+..+. ..+++.+.+ +.+||.++ +..+..+. .+. ....-++++++++..||++.
T Consensus 218 ~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI-s~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~ 295 (315)
T PLN02585 218 CLDVLIHYPQDKADGMIAHLAS-LAEKRLII-SFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVA 295 (315)
T ss_pred EcCEEEecCHHHHHHHHHHHHh-hcCCEEEE-EeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEE
Confidence 999988877433 345666665 45665544 43322110 000 00012458888888999876
Q ss_pred E
Q 039518 360 A 360 (617)
Q Consensus 360 ~ 360 (617)
.
T Consensus 296 ~ 296 (315)
T PLN02585 296 R 296 (315)
T ss_pred E
Confidence 5
No 65
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.08 E-value=1.3e-09 Score=114.62 Aligned_cols=102 Identities=21% Similarity=0.216 Sum_probs=79.4
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEec
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
..++.+|||||||+|.++..++++.... .++.+|. +.+++.++++ +. .+.+..+|+.+.++++ +|+|+++
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~ 222 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPEL-DSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFC 222 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCC-EEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeE
Confidence 4566789999999999999999886543 5677787 5777777654 33 3667788876666553 6999989
Q ss_pred ccccccccc-hHHHHHHHHHhccCCeEEEEEeC
Q 039518 300 RCRVDWHAN-DGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 300 ~~l~h~~~d-~~~~L~el~RvLrPGG~Liis~p 331 (617)
+++|+|.++ ...+|+++++.|+|||.+++.+.
T Consensus 223 ~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 223 RILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 888888643 36799999999999999999864
No 66
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.07 E-value=7.8e-10 Score=109.10 Aligned_cols=121 Identities=17% Similarity=0.286 Sum_probs=86.5
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCC---CCCCCeeEEEeccc
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLP---YPSSSFEMVHCSRC 301 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lp---f~d~sFDlV~~s~~ 301 (617)
.+|||||||+|.++..++++.... .+.++|+++.+++.|+++ +. ++.+..+|+..++ +++++||.|+++..
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~-~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDK-NFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCC-CEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 359999999999999999876543 788899999999888654 33 5778888876553 45679999997642
Q ss_pred ccccccch--------HHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHc-CceEEE
Q 039518 302 RVDWHAND--------GILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAM-CWKLIA 360 (617)
Q Consensus 302 l~h~~~d~--------~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~-gw~~v~ 360 (617)
.+|.... ..+++++.|+|||||.|++.+.. ......+.+.+... +|+.+.
T Consensus 97 -dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~--------~~~~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 97 -DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN--------EPLFEDMLKVLSENDLFENTS 155 (194)
T ss_pred -CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC--------HHHHHHHHHHHHhCCCeEecc
Confidence 3444221 56899999999999999997632 21233344444444 476654
No 67
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.06 E-value=9.8e-10 Score=114.32 Aligned_cols=129 Identities=19% Similarity=0.160 Sum_probs=90.5
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHH---HHHHHh-CCCcEEEE--ecCCCCCCCCCCeeEEEeccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQI---QFALER-GIGAMISA--LSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~l---q~A~er-g~~~~~~~--~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
.|++|||||||.|.++..|+.+|.. .|.++|.+.... +++++- |....+.. ..++.+|. .++||+|+|..+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~--~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGV 191 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAK--SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGV 191 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCC--EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeee
Confidence 3456999999999999999999875 455556554443 333332 33332222 46788887 789999999998
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCC-----CC-------Ch---hhHHHHHHHHHHcCceEEE
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKD-----KD-------YP---LIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~-----~~-------~~---~~W~~le~La~~~gw~~v~ 360 (617)
+.|.. +|-..|.++...|+|||.+++.+-...... |. +. -.-..+...++++||+.+.
T Consensus 192 LYHrr-~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~ 264 (315)
T PF08003_consen 192 LYHRR-SPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVR 264 (315)
T ss_pred hhccC-CHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEE
Confidence 88866 899999999999999999998643111110 00 00 0123488899999999886
No 68
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.06 E-value=1.2e-09 Score=98.04 Aligned_cols=99 Identities=17% Similarity=0.131 Sum_probs=75.1
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCC-CCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQ-LPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~-Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||+|||+|.++..++++... ..++++|+++.+++.++++ +. ++.+...+... ++...++||.|++..
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence 34557999999999999999887433 4788999999999988754 22 45666666544 333346899999865
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
... ....+++++.++|+|||++++..
T Consensus 97 ~~~----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 97 SGG----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred cch----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 322 34689999999999999999975
No 69
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.05 E-value=2.2e-10 Score=110.61 Aligned_cols=101 Identities=17% Similarity=0.230 Sum_probs=75.2
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC-cEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG-AMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~-~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
+.+|||+|||+|.++..+++++... .++.+|+++.+++.++++ +.. +.+...|... +.++++||+|+|+--++
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~-~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDA-KVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCE-EEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---SB
T ss_pred CCeEEEecCChHHHHHHHHHhCCCC-EEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccchh
Confidence 3459999999999999999987654 588899999999998774 444 6666666533 23468999999985433
Q ss_pred cccc----chHHHHHHHHHhccCCeEEEEEeC
Q 039518 304 DWHA----NDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 304 h~~~----d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.-.. -...++.+..+.|+|||.+++...
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 2221 146689999999999999988653
No 70
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.04 E-value=7.3e-10 Score=108.86 Aligned_cols=98 Identities=18% Similarity=0.246 Sum_probs=74.7
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCCCCCCCCCCeeEEEecccccccc
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---IGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~ 306 (617)
.++||+|||.|.++..|+.+. -.+..+|+++.+++.|++|- ..+.+.+.++... .|+++||+||++.++..+.
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~ 120 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLD 120 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGSS
T ss_pred ceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHcCC
Confidence 349999999999999999884 37788899999999999983 3478888877554 4788999999999777765
Q ss_pred c--chHHHHHHHHHhccCCeEEEEEeC
Q 039518 307 A--NDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 307 ~--d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+ +...++..+...|+|||.+++...
T Consensus 121 ~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 121 DAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 2 356789999999999999999763
No 71
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.04 E-value=1.3e-09 Score=109.92 Aligned_cols=131 Identities=11% Similarity=0.057 Sum_probs=90.0
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHH-HhCC----------------CcEEEEecCCCCCCC-
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFAL-ERGI----------------GAMISALSTKQLPYP- 289 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~-erg~----------------~~~~~~~d~~~Lpf~- 289 (617)
++.+|||+|||.|..+.+|+++|. .|+++|+++.+++.+. ++++ .+.+.++|+..++..
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 456799999999999999999987 5778899999999763 3433 356677888777533
Q ss_pred CCCeeEEEeccccccccc-chHHHHHHHHHhccCCeEEEEEe---CCCCCCCCCChhhHHHHHHHHHHcCceEEEEe
Q 039518 290 SSSFEMVHCSRCRVDWHA-NDGILLKEVDRVLRPNGYFVYSA---PPAYRKDKDYPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 290 d~sFDlV~~s~~l~h~~~-d~~~~L~el~RvLrPGG~Liis~---p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~ 362 (617)
...||+|+-..+++|++. ....++..+.++|+|||.+++.+ ++.....+.....-+++.++.. -+|++....
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~-~~~~i~~~~ 189 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYA-GCFEIELLE 189 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhc-CCceEEEee
Confidence 258999998877788763 35779999999999999755432 1111122222222344665553 236666543
No 72
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.04 E-value=2.8e-09 Score=106.63 Aligned_cols=128 Identities=21% Similarity=0.301 Sum_probs=87.6
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||||||+|.++..|++.+. .++++|+++.+++.|+++ +. .+.+..+| ++..+++||+|++..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~ 135 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLD 135 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcc
Confidence 3456799999999999999998765 478899999999999876 22 35566665 444568899999998
Q ss_pred cccccc-cchHHHHHHHHHhccCCeEEEEEeCCC-----------CCCCCC-----ChhhHHHHHHHHHHcCceEEEE
Q 039518 301 CRVDWH-ANDGILLKEVDRVLRPNGYFVYSAPPA-----------YRKDKD-----YPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 301 ~l~h~~-~d~~~~L~el~RvLrPGG~Liis~p~~-----------~~~~~~-----~~~~W~~le~La~~~gw~~v~~ 361 (617)
+++|+. ++...+++++.+++++++.+.+ .+.. .+.... ....-..+.++++..||++...
T Consensus 136 ~l~~~~~~~~~~~l~~l~~~~~~~~~i~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 212 (230)
T PRK07580 136 VLIHYPQEDAARMLAHLASLTRGSLIFTF-APYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRT 212 (230)
T ss_pred hhhcCCHHHHHHHHHHHHhhcCCeEEEEE-CCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEee
Confidence 888876 3456788899888765554433 2210 000000 0001234777888888887764
No 73
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.03 E-value=2.9e-09 Score=104.06 Aligned_cols=120 Identities=12% Similarity=0.053 Sum_probs=88.1
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
.++.+|||+|||+|.++..++++... ..++++|+++.+++.|+++ +. ++.+..++.. .++ .++||+|++...
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~ 106 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPS-LQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGGS 106 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECCC
Confidence 35667999999999999999887543 3788899999999988764 32 3566666553 233 357999998753
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
. .....++.++.++|+|||++++..... ....++.+++++.||+.+..
T Consensus 107 ~----~~~~~~l~~~~~~Lk~gG~lv~~~~~~--------~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 107 G----GNLTAIIDWSLAHLHPGGRLVLTFILL--------ENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred c----cCHHHHHHHHHHhcCCCeEEEEEEecH--------hhHHHHHHHHHHCCCCcceE
Confidence 2 245678999999999999999865311 11456778899999986653
No 74
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.03 E-value=6.9e-10 Score=118.93 Aligned_cols=99 Identities=21% Similarity=0.226 Sum_probs=76.8
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEeccccccc
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCRVDW 305 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~ 305 (617)
.+|||+|||+|.++..++++... ..++++|+++.+++.|+++ ++...+...|... ..++.||+|+|+..+|..
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~-~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPK-IRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS--DIKGRFDMIISNPPFHDG 274 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc--ccCCCccEEEECCCccCC
Confidence 36999999999999999987543 3688999999999988764 4555565555433 235789999998765542
Q ss_pred c----cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 306 H----ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 306 ~----~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
. .....++.++.+.|+|||.|+++..
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 2 2357899999999999999999875
No 75
>PRK14967 putative methyltransferase; Provisional
Probab=99.02 E-value=4.4e-09 Score=105.87 Aligned_cols=123 Identities=12% Similarity=0.048 Sum_probs=87.2
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
.++.+|||+|||+|.++..+++.+. ..++++|+++.+++.++++ +.++.+...|+.. .+++++||+|+++.-.
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy 111 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPY 111 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCC
Confidence 4567899999999999999987653 2678899999999877764 4556677777654 2456789999987422
Q ss_pred ccccc--------------------chHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 303 VDWHA--------------------NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 303 ~h~~~--------------------d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
.+-.. ....++.++.++|||||.+++...... . ..++.+.++..||....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~------~--~~~~~~~l~~~g~~~~~ 181 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS------G--VERTLTRLSEAGLDAEV 181 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc------C--HHHHHHHHHHCCCCeEE
Confidence 21111 134578889999999999998754321 1 34566667778886444
No 76
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.01 E-value=8.2e-09 Score=105.83 Aligned_cols=120 Identities=18% Similarity=0.134 Sum_probs=83.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEeccccccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHA 307 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~ 307 (617)
++.+|||+|||+|.++..+++.+.. .+.++|+++.+++.|+++.....+. +...++..+.+||+|+++... .
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~--~~~~~~~~~~~fD~Vvani~~----~ 190 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVE--LNVYLPQGDLKADVIVANILA----N 190 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCC--ceEEEccCCCCcCEEEEcCcH----H
Confidence 5667999999999999988877654 4788999999999988762111110 001112222379999986421 2
Q ss_pred chHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEee
Q 039518 308 NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKI 363 (617)
Q Consensus 308 d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~~ 363 (617)
....++.++.++|||||++++++.... ..+.+...++..||+++....
T Consensus 191 ~~~~l~~~~~~~LkpgG~lilsgi~~~--------~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 191 PLLELAPDLARLLKPGGRLILSGILEE--------QADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECcHh--------hHHHHHHHHHHCCCEEEEEEE
Confidence 345789999999999999999874211 134577888899999876443
No 77
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.01 E-value=3.2e-09 Score=111.14 Aligned_cols=117 Identities=14% Similarity=0.154 Sum_probs=82.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
++.+|||+|||+|.++..+++.+.. .+.++|+++.+++.|+++ ++. +.+...+ ..+..+++||+|+++..
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~--~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~--~~~~~~~~fDlVvan~~ 234 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAA--KVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY--LEQPIEGKADVIVANIL 234 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc--cccccCCCceEEEEecC
Confidence 4567999999999999988877643 688899999999999876 332 2222222 23345678999998742
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
. .....++.++.++|||||++++++... .....+.+.+++. |+.+..
T Consensus 235 ~----~~l~~ll~~~~~~LkpgG~li~sgi~~--------~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 235 A----EVIKELYPQFSRLVKPGGWLILSGILE--------TQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred H----HHHHHHHHHHHHHcCCCcEEEEEeCcH--------hHHHHHHHHHHcc-CceeeE
Confidence 2 234578999999999999999987421 1134466666665 776653
No 78
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.00 E-value=3.7e-10 Score=113.29 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=80.9
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEE------ecCCCCCCCCCCeeEEEecccccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISA------LSTKQLPYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~------~d~~~Lpf~d~sFDlV~~s~~l~h 304 (617)
.++|+|||+|.-+..+++..- .|.++|++++|++.|++......... .+...|--.++|.|+|+|..|+ |
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~-H 111 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV-H 111 (261)
T ss_pred eEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH-H
Confidence 399999999966666666532 66788999999999987643222211 1223333348999999999875 6
Q ss_pred cccchHHHHHHHHHhccCCe-EEEEEeCCCCCCCCCChhhHHHHHHHHHHcCce
Q 039518 305 WHANDGILLKEVDRVLRPNG-YFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWK 357 (617)
Q Consensus 305 ~~~d~~~~L~el~RvLrPGG-~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~ 357 (617)
|- |.+.+++++.|+||+.| .+.+-.- .+....|.+...+..+.+++
T Consensus 112 WF-dle~fy~~~~rvLRk~Gg~iavW~Y------~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 112 WF-DLERFYKEAYRVLRKDGGLIAVWNY------NDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hh-chHHHHHHHHHHcCCCCCEEEEEEc------cCCCcCCHHHHHHHHHHhhc
Confidence 77 79999999999999877 5555331 11223366777777777766
No 79
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.00 E-value=1.9e-09 Score=107.93 Aligned_cols=97 Identities=15% Similarity=0.137 Sum_probs=71.9
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC--------CCCCCeeEEEe
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP--------YPSSSFEMVHC 298 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp--------f~d~sFDlV~~ 298 (617)
.++.+|||+|||+|.++..++++......+.++|+++ + ....++.+..+|+.+.+ +.+++||+|+|
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-----~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S 123 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-----DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMS 123 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-----cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEec
Confidence 4567899999999999999988743223677888876 2 11234778888887753 56789999998
Q ss_pred cccccccccch-----------HHHHHHHHHhccCCeEEEEEe
Q 039518 299 SRCRVDWHAND-----------GILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 299 s~~l~h~~~d~-----------~~~L~el~RvLrPGG~Liis~ 330 (617)
+.+. ++..++ ..+|.++.++|+|||.|++..
T Consensus 124 ~~~~-~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 124 DMAP-NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred CCCC-ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 7533 333221 458999999999999999965
No 80
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.99 E-value=2e-09 Score=107.09 Aligned_cols=97 Identities=13% Similarity=0.091 Sum_probs=72.8
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||+|||+|..+..+++.......+.++|+++.+++.|+++ +. .+.+..+|........++||+|++..
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~ 150 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTA 150 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEcc
Confidence 4567899999999999988876521112678889999999888764 33 26777788765544567899999886
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+..+.. .++.+.|+|||.+++..
T Consensus 151 ~~~~~~-------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 151 AASTIP-------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred Ccchhh-------HHHHHhcCcCcEEEEEE
Confidence 554432 47889999999999864
No 81
>PRK14968 putative methyltransferase; Provisional
Probab=98.98 E-value=1.1e-08 Score=98.74 Aligned_cols=122 Identities=15% Similarity=0.142 Sum_probs=88.0
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC---cEEEEecCCCCCCCCCCeeEEEecc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG---AMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~---~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
++.+|||+|||+|.++..+++++. .++++|+++.+++.++++ +.. +.+...|... ++.+++||+|+++.
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~ 98 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNP 98 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECC
Confidence 456799999999999999998843 677889999999888664 332 5666666543 34556899999875
Q ss_pred cccccc--------------------cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 301 CRVDWH--------------------ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 301 ~l~h~~--------------------~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
...+.. .....+++++.++|+|||.+++..+... . -+.+.+++.+.||++..
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~------~--~~~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT------G--EDEVLEYLEKLGFEAEV 170 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC------C--HHHHHHHHHHCCCeeee
Confidence 432210 0134579999999999999998765321 1 24578888899998765
Q ss_pred E
Q 039518 361 R 361 (617)
Q Consensus 361 ~ 361 (617)
.
T Consensus 171 ~ 171 (188)
T PRK14968 171 V 171 (188)
T ss_pred e
Confidence 3
No 82
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.98 E-value=1.8e-09 Score=116.84 Aligned_cols=99 Identities=17% Similarity=0.135 Sum_probs=74.4
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC----CcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI----GAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~----~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
.+|||+|||+|.++..+++++... .++++|+++.+++.|+++ +. .+.+...|... .+++++||+|+|+-.
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~-~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPP 307 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQA-KVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP 307 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcC
Confidence 469999999999999999886543 788999999999999875 22 34555555422 124568999999865
Q ss_pred ccccc----cchHHHHHHHHHhccCCeEEEEEe
Q 039518 302 RVDWH----ANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 302 l~h~~----~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
++.-. ....+++.++.++|+|||.|+++.
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 54321 123568999999999999999986
No 83
>PTZ00146 fibrillarin; Provisional
Probab=98.98 E-value=8.1e-09 Score=107.81 Aligned_cols=136 Identities=10% Similarity=0.030 Sum_probs=88.6
Q ss_pred CCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHH----HHHHHHHhCCCcEEEEecCCC---CCCCCCCee
Q 039518 222 GNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHEN----QIQFALERGIGAMISALSTKQ---LPYPSSSFE 294 (617)
Q Consensus 222 ~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~----~lq~A~erg~~~~~~~~d~~~---Lpf~d~sFD 294 (617)
..+.+.++.+|||+|||+|.++.++++.--..-.|.++|+++. +++.|.++ .++.....|+.. +..+..+||
T Consensus 126 ~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vD 204 (293)
T PTZ00146 126 ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVD 204 (293)
T ss_pred ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCC
Confidence 3456788899999999999999999987311125777899975 44555544 456677777643 222345899
Q ss_pred EEEecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCC-CCChhhHHHHHHHHHHcCceEEEE
Q 039518 295 MVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKD-KDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 295 lV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~-~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
+|++... .+++...++.++.++|||||+|+|......-+. +.....+.+-.+.+++.||+.+..
T Consensus 205 vV~~Dva---~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~ 269 (293)
T PTZ00146 205 VIFADVA---QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQ 269 (293)
T ss_pred EEEEeCC---CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 9998752 233455677899999999999999643221111 111111222136678889997764
No 84
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.97 E-value=8.1e-10 Score=98.80 Aligned_cols=101 Identities=22% Similarity=0.345 Sum_probs=78.8
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----C--CCcEEEEecCCCCC--CCCCCeeEEEecc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----G--IGAMISALSTKQLP--YPSSSFEMVHCSR 300 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g--~~~~~~~~d~~~Lp--f~d~sFDlV~~s~ 300 (617)
|.+|||+|||+|.++..+++.+ ...+.++|+++..++.|+.+ + .++.+.++|...+. +++++||+|+++-
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence 4579999999999999999887 34788999999999999876 2 24788888876664 6789999999985
Q ss_pred ccccccc-------chHHHHHHHHHhccCCeEEEEEeC
Q 039518 301 CRVDWHA-------NDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 301 ~l~h~~~-------d~~~~L~el~RvLrPGG~Liis~p 331 (617)
-...... ....+++++.++|||||.+++..|
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 4443211 135689999999999999999765
No 85
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.97 E-value=5.1e-09 Score=103.51 Aligned_cols=124 Identities=16% Similarity=0.169 Sum_probs=88.2
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCC-CCCCCCCeeEE
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQ-LPYPSSSFEMV 296 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~-Lpf~d~sFDlV 296 (617)
+.+.++.+|||+|||+|.++..++........+.++|+++.+++.|+++ ++ ++.+..+|..+ ++..++.||.|
T Consensus 36 l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V 115 (198)
T PRK00377 36 LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRI 115 (198)
T ss_pred cCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEE
Confidence 3456778899999999999998876421122678889999999988765 42 45666677654 33334689999
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEE
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLI 359 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v 359 (617)
++.. . ..++..++.++.++|+|||++++..... ....++...+++.||...
T Consensus 116 ~~~~---~-~~~~~~~l~~~~~~LkpgG~lv~~~~~~--------~~~~~~~~~l~~~g~~~~ 166 (198)
T PRK00377 116 FIGG---G-SEKLKEIISASWEIIKKGGRIVIDAILL--------ETVNNALSALENIGFNLE 166 (198)
T ss_pred EECC---C-cccHHHHHHHHHHHcCCCcEEEEEeecH--------HHHHHHHHHHHHcCCCeE
Confidence 9753 1 2367889999999999999999865311 114557777788898543
No 86
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.96 E-value=8.1e-09 Score=108.43 Aligned_cols=143 Identities=17% Similarity=0.224 Sum_probs=93.9
Q ss_pred CcccCChhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC
Q 039518 200 THFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG 275 (617)
Q Consensus 200 t~F~~~a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~ 275 (617)
..|..|...-.....+++... ..++.+|||+|||+|.++...++.|.. .+.++|+++.+++.|+++ ++.
T Consensus 138 ~AFGTG~H~TT~lcl~~l~~~-----~~~g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~N~~~ 210 (295)
T PF06325_consen 138 MAFGTGHHPTTRLCLELLEKY-----VKPGKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAELNGVE 210 (295)
T ss_dssp SSS-SSHCHHHHHHHHHHHHH-----SSTTSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHHTT-T
T ss_pred CcccCCCCHHHHHHHHHHHHh-----ccCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHHcCCC
Confidence 445555543333333343221 234567999999999999999988875 578889999999988876 555
Q ss_pred cEEEEecCCCCCCCCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcC
Q 039518 276 AMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMC 355 (617)
Q Consensus 276 ~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~g 355 (617)
..+.+.... ....+.||+|+++-.. .-...++..+.++|+|||++++|+-.. . ..+.+.+.+++ |
T Consensus 211 ~~~~v~~~~--~~~~~~~dlvvANI~~----~vL~~l~~~~~~~l~~~G~lIlSGIl~------~--~~~~v~~a~~~-g 275 (295)
T PF06325_consen 211 DRIEVSLSE--DLVEGKFDLVVANILA----DVLLELAPDIASLLKPGGYLILSGILE------E--QEDEVIEAYKQ-G 275 (295)
T ss_dssp TCEEESCTS--CTCCS-EEEEEEES-H----HHHHHHHHHCHHHEEEEEEEEEEEEEG------G--GHHHHHHHHHT-T
T ss_pred eeEEEEEec--ccccccCCEEEECCCH----HHHHHHHHHHHHhhCCCCEEEEccccH------H--HHHHHHHHHHC-C
Confidence 555443222 2345889999987421 124568888999999999999998411 1 14557777766 9
Q ss_pred ceEEEEeee
Q 039518 356 WKLIARKIQ 364 (617)
Q Consensus 356 w~~v~~~~~ 364 (617)
|+++....+
T Consensus 276 ~~~~~~~~~ 284 (295)
T PF06325_consen 276 FELVEEREE 284 (295)
T ss_dssp EEEEEEEEE
T ss_pred CEEEEEEEE
Confidence 998875543
No 87
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=7.9e-09 Score=108.03 Aligned_cols=122 Identities=19% Similarity=0.251 Sum_probs=86.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCC-CCeeEEEecccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPS-SSFEMVHCSRCR 302 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d-~sFDlV~~s~~l 302 (617)
++.+|||+|||+|.++...++.|.. .+.++|+++.+++.|+++ +++..........+..+. +.||+|+++- +
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-L 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-L 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-h
Confidence 5667999999999999999999875 678889999999999876 443211111112222333 5899999874 1
Q ss_pred cccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEee
Q 039518 303 VDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKI 363 (617)
Q Consensus 303 ~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~~ 363 (617)
.+-...+..++.+.|||||++++|+--. ++ -+.+.+.+.+.||+++....
T Consensus 239 ---A~vl~~La~~~~~~lkpgg~lIlSGIl~-----~q---~~~V~~a~~~~gf~v~~~~~ 288 (300)
T COG2264 239 ---AEVLVELAPDIKRLLKPGGRLILSGILE-----DQ---AESVAEAYEQAGFEVVEVLE 288 (300)
T ss_pred ---HHHHHHHHHHHHHHcCCCceEEEEeehH-----hH---HHHHHHHHHhCCCeEeEEEe
Confidence 2224578999999999999999998411 11 23466677788999887543
No 88
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=1.6e-09 Score=112.84 Aligned_cols=98 Identities=20% Similarity=0.253 Sum_probs=74.7
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCc-EEEEecCCCCCCCCCCeeEEEeccccccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGA-MISALSTKQLPYPSSSFEMVHCSRCRVDW 305 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~-~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~ 305 (617)
+|||+|||.|.++..|++.... ..++-+|++..+++.|+++ ++.. .+...+. -.+..+ +||+|+|+--+|.-
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~-~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~-~~~v~~-kfd~IisNPPfh~G 237 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQ-AKLTLVDVNARAVESARKNLAANGVENTEVWASNL-YEPVEG-KFDLIISNPPFHAG 237 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCC-CeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecc-cccccc-cccEEEeCCCccCC
Confidence 6999999999999999999874 3888899999999999875 4444 3444333 223334 89999998655433
Q ss_pred ccch----HHHHHHHHHhccCCeEEEEEeC
Q 039518 306 HAND----GILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 306 ~~d~----~~~L~el~RvLrPGG~Liis~p 331 (617)
..-. .+++.+..+.|++||.|+|+..
T Consensus 238 ~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 238 KAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 2222 3789999999999999999874
No 89
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.96 E-value=1.8e-08 Score=102.14 Aligned_cols=121 Identities=15% Similarity=0.232 Sum_probs=87.8
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC-cEEEEecCCCCCCCCCCeeEEEecccccc
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG-AMISALSTKQLPYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~-~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h 304 (617)
.+|||+|||+|.++..+++.... ..+.++|+++.+++.|+++ +.. +.+..+|+.. ++++++||+|+++.....
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCc
Confidence 46999999999999999886432 2788899999999988765 443 6777777654 456789999998632221
Q ss_pred ------ccc-------------------chHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEE
Q 039518 305 ------WHA-------------------NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLI 359 (617)
Q Consensus 305 ------~~~-------------------d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v 359 (617)
+.. ....++.++.++|+|||.+++.... .. -+.+.+++++.||+.+
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~-------~~--~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY-------DQ--GEAVRALFEAAGFADV 237 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc-------cH--HHHHHHHHHhCCCCce
Confidence 110 0135789999999999999997531 11 2447888888999876
Q ss_pred EE
Q 039518 360 AR 361 (617)
Q Consensus 360 ~~ 361 (617)
..
T Consensus 238 ~~ 239 (251)
T TIGR03534 238 ET 239 (251)
T ss_pred EE
Confidence 64
No 90
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.95 E-value=5.2e-09 Score=103.78 Aligned_cols=116 Identities=17% Similarity=0.262 Sum_probs=88.8
Q ss_pred EEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecC-CCCCCCCCCeeEEEecccccccc----
Q 039518 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALST-KQLPYPSSSFEMVHCSRCRVDWH---- 306 (617)
Q Consensus 232 VLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~-~~Lpf~d~sFDlV~~s~~l~h~~---- 306 (617)
|||||||+|..+..|.+.|. -..++|+|+.|++.|.++-+...+..+|+ +.+||..++||.|++.. .+.|.
T Consensus 54 iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISIS-AvQWLcnA~ 129 (270)
T KOG1541|consen 54 ILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISIS-AVQWLCNAD 129 (270)
T ss_pred EEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEee-eeeeecccC
Confidence 99999999999999988884 46678999999999998766666666665 88999999999999764 33554
Q ss_pred ---cch----HHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCce
Q 039518 307 ---AND----GILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWK 357 (617)
Q Consensus 307 ---~d~----~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~ 357 (617)
.+| ..++..++.+|++|+..++.--+ ..+.. -+.+.+-+..+||.
T Consensus 130 ~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp----en~~q--~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 130 KSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP----ENEAQ--IDMIMQQAMKAGFG 181 (270)
T ss_pred ccccChHHHHHHHhhhhhhhhccCceeEEEecc----cchHH--HHHHHHHHHhhccC
Confidence 123 23678899999999999996422 12222 45577777788875
No 91
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.95 E-value=4.6e-09 Score=111.91 Aligned_cols=120 Identities=22% Similarity=0.209 Sum_probs=90.9
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC-cEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG-AMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~-~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
.++.+|||+|||+|.++..++..+. .+.++|+++.+++.|+++ +.. +.+..+|+.++|+++++||+|+++.-
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 5667899999999999888776654 577889999999887765 433 57788899999988889999998621
Q ss_pred cc-------ccc-cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 302 RV-------DWH-ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 302 l~-------h~~-~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
.. +.. +....++.++.|+|+|||++++..|... .+..+++..|| ++..
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~-----------~~~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI-----------DLESLAEDAFR-VVKR 313 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC-----------CHHHHHhhcCc-chhe
Confidence 11 001 1146799999999999999999886321 25567889999 6653
No 92
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.95 E-value=1.6e-08 Score=103.26 Aligned_cols=155 Identities=17% Similarity=0.220 Sum_probs=105.8
Q ss_pred cCCCCCcccCChhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC
Q 039518 195 FPGGGTHFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI 274 (617)
Q Consensus 195 Fpgggt~F~~~a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~ 274 (617)
+-|.|.+|--..+++.+.+..--..... -....++||||+|.|..+..|+...- .+...+.|..|...-+++|.
T Consensus 64 ~LgRG~MFvfS~~Q~~~LL~~~~~~~~~---~~~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~~kg~ 137 (265)
T PF05219_consen 64 ILGRGSMFVFSEEQFRKLLRISGFSWNP---DWKDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLSKKGF 137 (265)
T ss_pred hhcCCcEEEecHHHHHHHhhhhccCCCC---cccCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHHhCCC
Confidence 4578888877777665543311000011 11345699999999999999987533 56778999999888888886
Q ss_pred CcEEEEecCCCCCCCCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEe--CC-------C-CCCCC-----C
Q 039518 275 GAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA--PP-------A-YRKDK-----D 339 (617)
Q Consensus 275 ~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~--p~-------~-~~~~~-----~ 339 (617)
.+ .+..+..-.+.+||+|.|.+++-.. .+|..+|+++++.|+|+|.++++. |- . .+..| -
T Consensus 138 ~v----l~~~~w~~~~~~fDvIscLNvLDRc-~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~ 212 (265)
T PF05219_consen 138 TV----LDIDDWQQTDFKFDVISCLNVLDRC-DRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPV 212 (265)
T ss_pred eE----EehhhhhccCCceEEEeehhhhhcc-CCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCC
Confidence 43 2333333335689999999877654 489999999999999999999874 10 0 11111 1
Q ss_pred ChhhHHH----HHHHHHHcCceEEE
Q 039518 340 YPLIWDK----LVNLTTAMCWKLIA 360 (617)
Q Consensus 340 ~~~~W~~----le~La~~~gw~~v~ 360 (617)
.+..|++ +.++++.+||+++.
T Consensus 213 ~g~~~E~~v~~l~~v~~p~GF~v~~ 237 (265)
T PF05219_consen 213 KGATFEEQVSSLVNVFEPAGFEVER 237 (265)
T ss_pred CCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 1234555 44888999999887
No 93
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.93 E-value=9.3e-09 Score=99.34 Aligned_cols=126 Identities=20% Similarity=0.253 Sum_probs=93.2
Q ss_pred cCCCC-eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHH----hCCC--cEEEEecCCCCCCCCCCeeEEEe
Q 039518 226 SAGVF-QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALE----RGIG--AMISALSTKQLPYPSSSFEMVHC 298 (617)
Q Consensus 226 ~~~g~-rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~e----rg~~--~~~~~~d~~~Lpf~d~sFDlV~~ 298 (617)
+...+ +|||+|||.|.+...|++.+... .++++|.++.+++.|+. ++.+ +.+.+.|+..-.+..+.||+|+-
T Consensus 64 v~~~A~~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlD 142 (227)
T KOG1271|consen 64 VSKQADRVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLD 142 (227)
T ss_pred hcccccceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEee
Confidence 33333 89999999999999999998764 48999999999988764 3555 78889998776777788888874
Q ss_pred ccccccc-------ccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 299 SRCRVDW-------HANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 299 s~~l~h~-------~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
-..+-.+ ...+..++..+.++|+|||.|+|+.-+.. -+++....+..+|+.+..
T Consensus 143 KGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T---------~dELv~~f~~~~f~~~~t 203 (227)
T KOG1271|consen 143 KGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT---------KDELVEEFENFNFEYLST 203 (227)
T ss_pred cCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc---------HHHHHHHHhcCCeEEEEe
Confidence 3222111 12235689999999999999999875321 455777777778877663
No 94
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.93 E-value=4.5e-09 Score=105.30 Aligned_cols=98 Identities=12% Similarity=0.113 Sum_probs=74.2
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
+.++.+|||||||+|.++..+++.......++++|+++.+++.|+++ +. ++.+..+|......+.++||+|++..
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence 34667899999999999988887632223678889999999998875 33 47788888766555678899999875
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
...+ ....+.+.|||||.+++..
T Consensus 154 ~~~~-------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 154 AGPD-------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred Cccc-------chHHHHHhhCCCcEEEEEE
Confidence 4432 2346677899999999854
No 95
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.92 E-value=6.9e-09 Score=99.39 Aligned_cols=74 Identities=19% Similarity=0.115 Sum_probs=64.1
Q ss_pred eecCCcHHHHHHHHHhC--------CCcEEEEecCCCCCCCCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEE
Q 039518 257 APKDGHENQIQFALERG--------IGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVY 328 (617)
Q Consensus 257 ~~iDis~~~lq~A~erg--------~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Lii 328 (617)
+++|+|+.|++.|+++. .++.+.++|++++|+++++||+|+++.+++++. |+..+|+|++|+|||||.+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV-DRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC-CHHHHHHHHHHHcCcCeEEEE
Confidence 36799999999997652 247889999999999999999999998776665 899999999999999999998
Q ss_pred EeC
Q 039518 329 SAP 331 (617)
Q Consensus 329 s~p 331 (617)
.+.
T Consensus 80 ~d~ 82 (160)
T PLN02232 80 LDF 82 (160)
T ss_pred EEC
Confidence 764
No 96
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.89 E-value=1.1e-08 Score=104.41 Aligned_cols=131 Identities=14% Similarity=0.214 Sum_probs=94.9
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----C--CCcEEEEecCCCCC--CCCCCeeEEEecc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----G--IGAMISALSTKQLP--YPSSSFEMVHCSR 300 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g--~~~~~~~~d~~~Lp--f~d~sFDlV~~s~ 300 (617)
..+|||+|||+|..+..++++... ..++++|+.+.+.+.|++. + ..+.+...|+.++. ....+||+|+|+-
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 567999999999999999998443 4888999999999999876 1 24677788876664 3345799999983
Q ss_pred cccc-----------------cccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEee
Q 039518 301 CRVD-----------------WHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKI 363 (617)
Q Consensus 301 ~l~h-----------------~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~~ 363 (617)
-... ...+.+.+++...++|||||++.++.++. ...++..++++.+|....
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e---------rl~ei~~~l~~~~~~~k~--- 191 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE---------RLAEIIELLKSYNLEPKR--- 191 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH---------HHHHHHHHHHhcCCCceE---
Confidence 2211 11235678999999999999999987632 144567778887877554
Q ss_pred eeEEEeecc
Q 039518 364 QTAIWIKEE 372 (617)
Q Consensus 364 ~~~IwqKp~ 372 (617)
...|+.++.
T Consensus 192 i~~V~p~~~ 200 (248)
T COG4123 192 IQFVYPKIG 200 (248)
T ss_pred EEEecCCCC
Confidence 334444443
No 97
>PLN03075 nicotianamine synthase; Provisional
Probab=98.89 E-value=7.7e-09 Score=108.28 Aligned_cols=102 Identities=13% Similarity=0.147 Sum_probs=79.4
Q ss_pred CCCeEEEECCCCcHHHHH-hccCCCcEEEeeecCCcHHHHHHHHHhC-------CCcEEEEecCCCCCCCCCCeeEEEec
Q 039518 228 GVFQVLDVGCGVASFSAF-LLPLDIQTMSFAPKDGHENQIQFALERG-------IGAMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~-La~~gv~~v~v~~iDis~~~lq~A~erg-------~~~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
++.+|||||||.|.++.. ++........++++|+++++++.|++.. ..+.|..+|+.+++...+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 557799999997755443 3333222337889999999999998753 24788888876654335789999998
Q ss_pred ccccccc-cchHHHHHHHHHhccCCeEEEEEe
Q 039518 300 RCRVDWH-ANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 300 ~~l~h~~-~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
++++|. +++..++..+.+.|+|||++++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 888885 688999999999999999999975
No 98
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.88 E-value=8.7e-09 Score=103.13 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=73.6
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
+.++.+|||||||+|.++..|++.......+.++|+++.+++.|+++ +. ++.+..+|........++||+|++..
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~ 154 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTA 154 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcC
Confidence 34667899999999999999988743222577889999999988875 33 46777778765444456899999775
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
...+ +...+.+.|+|||++++..
T Consensus 155 ~~~~-------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 155 AGPK-------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred Cccc-------ccHHHHHhcCcCcEEEEEE
Confidence 4322 3456789999999999864
No 99
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.84 E-value=1.1e-08 Score=107.91 Aligned_cols=104 Identities=13% Similarity=0.176 Sum_probs=74.6
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh------CCCcEEEEecCCC-CCCCCC----CeeEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER------GIGAMISALSTKQ-LPYPSS----SFEMV 296 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er------g~~~~~~~~d~~~-Lpf~d~----sFDlV 296 (617)
++.+|||+|||+|..+..|++.......++++|+|++|++.|.++ ++++....+|+.+ ++++.. ...++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 345699999999999999988743234788999999999988775 2345566788765 444433 23344
Q ss_pred Eecccccccc-cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 297 HCSRCRVDWH-ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 297 ~~s~~l~h~~-~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
++...+.++. ++...+|++++++|+|||.|++...
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 4444445544 3456789999999999999999753
No 100
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.84 E-value=2.2e-08 Score=108.52 Aligned_cols=99 Identities=21% Similarity=0.332 Sum_probs=78.2
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCC--CCCCCCeeEEEecccc
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQL--PYPSSSFEMVHCSRCR 302 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~L--pf~d~sFDlV~~s~~l 302 (617)
..+||||||+|.++..++.+.... .+.++|++..+++.|.++ ++ ++.+..+|+..+ .+++++||.|++++ -
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~-~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF-P 201 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNK-LFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF-P 201 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCC-CEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC-C
Confidence 359999999999999999886543 788889999998777654 43 467777887554 47889999999764 3
Q ss_pred cccccch------HHHHHHHHHhccCCeEEEEEe
Q 039518 303 VDWHAND------GILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 303 ~h~~~d~------~~~L~el~RvLrPGG~Liis~ 330 (617)
.+|.... ..++.++.|+|+|||.+.+.+
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 4555332 578999999999999999976
No 101
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.83 E-value=2e-08 Score=84.71 Aligned_cols=97 Identities=21% Similarity=0.308 Sum_probs=75.1
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh-----CCCcEEEEecCCCCCC-CCCCeeEEEecccccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER-----GIGAMISALSTKQLPY-PSSSFEMVHCSRCRVD 304 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er-----g~~~~~~~~d~~~Lpf-~d~sFDlV~~s~~l~h 304 (617)
++||+|||+|.++..+++.. ...+.++|+++.+++.+++. ..+..+...+..+... ..++||+|+++.++.+
T Consensus 1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 38999999999999998732 33778889999998887721 2245666667655543 5678999999886655
Q ss_pred cccchHHHHHHHHHhccCCeEEEEE
Q 039518 305 WHANDGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 305 ~~~d~~~~L~el~RvLrPGG~Liis 329 (617)
+......++..+.+.|+|||.++++
T Consensus 79 ~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 LVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3557888999999999999999985
No 102
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.80 E-value=5.9e-08 Score=105.89 Aligned_cols=125 Identities=10% Similarity=0.057 Sum_probs=87.7
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCC-CCCeeEEEeccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYP-SSSFEMVHCSRCRV 303 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~-d~sFDlV~~s~~l~ 303 (617)
+.+|||+|||+|.++..++..... ..++++|+|+.+++.|+++ +.++.+..+|.....++ .++||+|+|+--.+
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~-a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPD-AFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 347999999999999998865332 2678899999999998875 45677778886443332 45799999974322
Q ss_pred ccc--------------------cc----hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEE
Q 039518 304 DWH--------------------AN----DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLI 359 (617)
Q Consensus 304 h~~--------------------~d----~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v 359 (617)
.-. ++ ...++.++.+.|+|||.+++.... .. -+.+.++++..||..+
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~------~Q---~e~V~~ll~~~Gf~~v 401 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF------DQ---GAAVRGVLAENGFSGV 401 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc------cH---HHHHHHHHHHCCCcEE
Confidence 110 01 134677778899999999886531 11 3458888888999876
Q ss_pred EEee
Q 039518 360 ARKI 363 (617)
Q Consensus 360 ~~~~ 363 (617)
....
T Consensus 402 ~v~k 405 (423)
T PRK14966 402 ETLP 405 (423)
T ss_pred EEEE
Confidence 6443
No 103
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.78 E-value=6.4e-08 Score=99.70 Aligned_cols=123 Identities=15% Similarity=0.192 Sum_probs=86.1
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC-----CCcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG-----IGAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg-----~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
++.+|||+|||+|.++..++..... ..++++|+++.+++.|+++. .++.+..+|... ++++++||+|+++.-.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~-~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPD-AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPY 185 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCc
Confidence 4567999999999999999887532 37888999999999998762 246677777633 2335789999986322
Q ss_pred ccc------c-------------------cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCce
Q 039518 303 VDW------H-------------------ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWK 357 (617)
Q Consensus 303 ~h~------~-------------------~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~ 357 (617)
... . +....++.++.++|+|||++++... + .. -+.+.++++..||.
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g---~---~~---~~~~~~~l~~~gf~ 256 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG---Y---DQ---GEAVRALLAAAGFA 256 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC---c---hH---HHHHHHHHHhCCCc
Confidence 110 0 1124578888899999999999652 1 11 23477788888987
Q ss_pred EEEE
Q 039518 358 LIAR 361 (617)
Q Consensus 358 ~v~~ 361 (617)
.+..
T Consensus 257 ~v~~ 260 (275)
T PRK09328 257 DVET 260 (275)
T ss_pred eeEE
Confidence 5543
No 104
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.77 E-value=2.4e-08 Score=97.79 Aligned_cols=98 Identities=15% Similarity=0.087 Sum_probs=69.3
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC--------CCCCCeeEEEe
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP--------YPSSSFEMVHC 298 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp--------f~d~sFDlV~~ 298 (617)
.++.+|||+|||+|.++..++++......+.++|+++.+ ...++.+..+|+.+.+ +++++||+|++
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~ 104 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMS 104 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEc
Confidence 567789999999999999888764322357788888754 1234566677765542 45678999998
Q ss_pred ccccc---cccc-------chHHHHHHHHHhccCCeEEEEEe
Q 039518 299 SRCRV---DWHA-------NDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 299 s~~l~---h~~~-------d~~~~L~el~RvLrPGG~Liis~ 330 (617)
..+.+ +|.. +...++.++.++|+|||.+++..
T Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 53211 1111 13678999999999999999965
No 105
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.76 E-value=4.7e-08 Score=98.94 Aligned_cols=101 Identities=14% Similarity=0.052 Sum_probs=83.2
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHH-----------------hCCCcEEEEecCCCCCCC-
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALE-----------------RGIGAMISALSTKQLPYP- 289 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~e-----------------rg~~~~~~~~d~~~Lpf~- 289 (617)
++.+||+.|||.|.-+.+|+++|. +|+++|+|+.+++.+.+ ++..+.+.++|+.+++..
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 456899999999999999999998 46778999999998755 245678899999888642
Q ss_pred --CCCeeEEEecccccccccc-hHHHHHHHHHhccCCeEEEEEeC
Q 039518 290 --SSSFEMVHCSRCRVDWHAN-DGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 290 --d~sFDlV~~s~~l~h~~~d-~~~~L~el~RvLrPGG~Liis~p 331 (617)
.+.||+|+-..++++++++ ...+.+.+.++|+|||.+++..-
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 2679999987778887744 56799999999999999888753
No 106
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.76 E-value=1.1e-07 Score=99.44 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=85.2
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
+.+|||+|||+|.++..++++... ..++++|+++.+++.|+++ +. ++.+..+|+.. ++++++||+|+++--.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~-~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPE-AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 356999999999999999986432 2678899999999988875 44 36677777632 2345689999986211
Q ss_pred c-------------ccc-----------cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceE
Q 039518 303 V-------------DWH-----------ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKL 358 (617)
Q Consensus 303 ~-------------h~~-----------~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~ 358 (617)
. +.+ .....++.++.++|+|||++++.... . ++.+.++....+|..
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~--------~--~~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN--------S--MEALEEAYPDVPFTW 269 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc--------C--HHHHHHHHHhCCCce
Confidence 1 000 01245789999999999999997641 1 446778888877765
Q ss_pred EE
Q 039518 359 IA 360 (617)
Q Consensus 359 v~ 360 (617)
+.
T Consensus 270 ~~ 271 (284)
T TIGR03533 270 LE 271 (284)
T ss_pred ee
Confidence 54
No 107
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.74 E-value=6.5e-08 Score=106.79 Aligned_cols=128 Identities=16% Similarity=0.262 Sum_probs=87.8
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCC--CCCCCeeEEEe-
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLP--YPSSSFEMVHC- 298 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lp--f~d~sFDlV~~- 298 (617)
..++.+|||+|||+|..+..++++... ..++++|+++.+++.++++ |..+.+..+|+..++ ++.++||.|++
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D 320 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLD 320 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEEC
Confidence 356778999999999999999887532 3688899999999888765 556677788877654 34678999994
Q ss_pred ---cccc-------cccccc----------hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHc-Cce
Q 039518 299 ---SRCR-------VDWHAN----------DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAM-CWK 357 (617)
Q Consensus 299 ---s~~l-------~h~~~d----------~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~-gw~ 357 (617)
+... ..|... ...+|.++.++|||||.+++++-.......+ ..+..++++. +++
T Consensus 321 ~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene-----~~v~~~l~~~~~~~ 395 (427)
T PRK10901 321 APCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENE-----QQIKAFLARHPDAE 395 (427)
T ss_pred CCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCH-----HHHHHHHHhCCCCE
Confidence 3211 011111 1368999999999999999998543332222 2355555543 454
Q ss_pred EE
Q 039518 358 LI 359 (617)
Q Consensus 358 ~v 359 (617)
.+
T Consensus 396 ~~ 397 (427)
T PRK10901 396 LL 397 (427)
T ss_pred Ee
Confidence 43
No 108
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.73 E-value=1.2e-07 Score=99.16 Aligned_cols=121 Identities=14% Similarity=0.137 Sum_probs=84.1
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecCCCCCCCCCCeeEEEecccc-
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMISALSTKQLPYPSSSFEMVHCSRCR- 302 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~~~Lpf~d~sFDlV~~s~~l- 302 (617)
.+|||+|||+|.++..++..... ..++++|+++.+++.|+++ +.. +.+..+|... ++++++||+|+++--.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~-~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPN-AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 47999999999999999886532 2688899999999988875 432 6777777643 3445589999986211
Q ss_pred ------------cccc-----------cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHH-HcCceE
Q 039518 303 ------------VDWH-----------ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTT-AMCWKL 358 (617)
Q Consensus 303 ------------~h~~-----------~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~-~~gw~~ 358 (617)
.|.+ .....++.++.+.|+|||++++.... .. -..+.++.. ..+|..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~------~q---~~~~~~~~~~~~~~~~ 264 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN------WQ---QKSLKELLRIKFTWYD 264 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc------cH---HHHHHHHHHhcCCCce
Confidence 1111 02346789999999999999997641 11 224666666 467865
Q ss_pred EEE
Q 039518 359 IAR 361 (617)
Q Consensus 359 v~~ 361 (617)
+..
T Consensus 265 ~~~ 267 (284)
T TIGR00536 265 VEN 267 (284)
T ss_pred eEE
Confidence 543
No 109
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.73 E-value=1.5e-07 Score=93.49 Aligned_cols=147 Identities=16% Similarity=0.224 Sum_probs=95.2
Q ss_pred hhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHH----HHhCCCcE--EE
Q 039518 206 APEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFA----LERGIGAM--IS 279 (617)
Q Consensus 206 a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A----~erg~~~~--~~ 279 (617)
.+.+.+.|.++++.... +|||||||||..+.+++++-.. +...+.|.++....-. .+.+.+.. -.
T Consensus 11 k~pIl~vL~~~l~~~~~--------~vLEiaSGtGqHa~~FA~~lP~-l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~ 81 (204)
T PF06080_consen 11 KDPILEVLKQYLPDSGT--------RVLEIASGTGQHAVYFAQALPH-LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPL 81 (204)
T ss_pred HhHHHHHHHHHhCccCc--------eEEEEcCCccHHHHHHHHHCCC-CEEcCCCCChHHHhhHHHHHHhcCCcccCCCe
Confidence 34555666666643222 4999999999999999987654 3678888887774322 23232210 11
Q ss_pred EecCCCC--CC------CCCCeeEEEecccccccc-cchHHHHHHHHHhccCCeEEEEEeCCCCCCC-------------
Q 039518 280 ALSTKQL--PY------PSSSFEMVHCSRCRVDWH-ANDGILLKEVDRVLRPNGYFVYSAPPAYRKD------------- 337 (617)
Q Consensus 280 ~~d~~~L--pf------~d~sFDlV~~s~~l~h~~-~d~~~~L~el~RvLrPGG~Liis~p~~~~~~------------- 337 (617)
..|+..- |. ..++||+|+|.+++|-.+ +.-+.+++.+.++|+|||.|++-+|-.+.-.
T Consensus 82 ~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sL 161 (204)
T PF06080_consen 82 ALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASL 161 (204)
T ss_pred EeecCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHH
Confidence 2333332 22 356899999998654333 2346689999999999999999988432211
Q ss_pred -----CCChhhHHHHHHHHHHcCceEEEE
Q 039518 338 -----KDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 338 -----~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
...-+..+.+.+++++.|++....
T Consensus 162 r~rdp~~GiRD~e~v~~lA~~~GL~l~~~ 190 (204)
T PF06080_consen 162 RSRDPEWGIRDIEDVEALAAAHGLELEED 190 (204)
T ss_pred hcCCCCcCccCHHHHHHHHHHCCCccCcc
Confidence 111123445999999999987764
No 110
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.72 E-value=8.1e-08 Score=95.72 Aligned_cols=95 Identities=15% Similarity=0.091 Sum_probs=70.8
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
..++.+|||+|||+|.++..|++... .+.++|+++.+++.|+++ +. ++.+..+|......+.++||+|++..
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~ 152 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTA 152 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEcc
Confidence 35667899999999999988877643 577889999999888775 33 36777777543222347899999875
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
...+ +..++.+.|+|||.+++..
T Consensus 153 ~~~~-------~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 153 AAPE-------IPRALLEQLKEGGILVAPV 175 (212)
T ss_pred Cchh-------hhHHHHHhcCCCcEEEEEE
Confidence 4332 3456789999999999975
No 111
>PHA03411 putative methyltransferase; Provisional
Probab=98.71 E-value=1.4e-07 Score=97.79 Aligned_cols=126 Identities=13% Similarity=0.073 Sum_probs=91.1
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHAN 308 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d 308 (617)
+.+|||+|||+|.++..++.+... ..++++|+++.+++.|+++..++.+..+|+..+. .+++||+|+++-.+.+....
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~-~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKP-EKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINTT 142 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccCch
Confidence 346999999999999888775321 3788899999999999987666888888887765 34689999998766653311
Q ss_pred -------------------hHHHHHHHHHhccCCeEEEEEe--CCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 309 -------------------DGILLKEVDRVLRPNGYFVYSA--PPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 309 -------------------~~~~L~el~RvLrPGG~Liis~--p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
....+..+.++|+|+|.+.+.- -+.| +..-. -++..++++..||....
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y-~~sl~---~~~y~~~l~~~g~~~~~ 211 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYY-DGTMK---SNKYLKWSKQTGLVTYA 211 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccc-cccCC---HHHHHHHHHhcCcEecC
Confidence 2456788889999999776642 1222 22222 34588899999997654
No 112
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.71 E-value=5.9e-08 Score=96.26 Aligned_cols=111 Identities=18% Similarity=0.280 Sum_probs=70.8
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccccch
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHAND 309 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d~ 309 (617)
..|-|+|||.+.++..+. .+..+.++ |+... +-.+...|+..+|+++++.|++++...++ ..|.
T Consensus 74 ~viaD~GCGdA~la~~~~-~~~~V~Sf---DLva~----------n~~Vtacdia~vPL~~~svDv~VfcLSLM--GTn~ 137 (219)
T PF05148_consen 74 LVIADFGCGDAKLAKAVP-NKHKVHSF---DLVAP----------NPRVTACDIANVPLEDESVDVAVFCLSLM--GTNW 137 (219)
T ss_dssp S-EEEES-TT-HHHHH---S---EEEE---ESS-S----------STTEEES-TTS-S--TT-EEEEEEES-----SS-H
T ss_pred EEEEECCCchHHHHHhcc-cCceEEEe---eccCC----------CCCEEEecCccCcCCCCceeEEEEEhhhh--CCCc
Confidence 459999999999997764 34444455 43221 23467789999999999999999865543 3588
Q ss_pred HHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEe
Q 039518 310 GILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 310 ~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~ 362 (617)
..+|.|+.|+|||||.|+|+....... .-+.+.+.++.+||+.....
T Consensus 138 ~~fi~EA~RvLK~~G~L~IAEV~SRf~------~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 138 PDFIREANRVLKPGGILKIAEVKSRFE------NVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEGGG-S-------HHHHHHHHHCTTEEEEEEE
T ss_pred HHHHHHHHheeccCcEEEEEEecccCc------CHHHHHHHHHHCCCeEEecc
Confidence 999999999999999999987422221 13557888999999998754
No 113
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.71 E-value=4.8e-08 Score=104.30 Aligned_cols=102 Identities=28% Similarity=0.355 Sum_probs=74.3
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---------------CCcEEEEecCCC------C
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---------------IGAMISALSTKQ------L 286 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---------------~~~~~~~~d~~~------L 286 (617)
++.+|||+|||-|....-....++. .+.++|++...++.|++|- ..+.+..+|... +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~--~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIK--HYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCC--EEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 6788999999998877766666655 6788999999999999874 234556665422 2
Q ss_pred CCCCCCeeEEEecccccccccch---HHHHHHHHHhccCCeEEEEEeC
Q 039518 287 PYPSSSFEMVHCSRCRVDWHAND---GILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 287 pf~d~sFDlV~~s~~l~h~~~d~---~~~L~el~RvLrPGG~Liis~p 331 (617)
+.....||+|-|.+++|+.-++. ..+|..+...|+|||+|+.++|
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 22335999999999887766443 4589999999999999999987
No 114
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.69 E-value=1.2e-07 Score=94.87 Aligned_cols=135 Identities=16% Similarity=0.163 Sum_probs=91.4
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC-----CcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI-----GAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~-----~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
...++||.|+|.|.++..|+-.-.. .|.-+|..+..++.|++.-. ...+....++++..+.+.||+|.+..|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~--~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFD--EVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-S--EEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcC--EeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 4567999999999999988766555 45557999999999996522 2456666777776556799999999999
Q ss_pred cccc-cchHHHHHHHHHhccCCeEEEEEeCCCC-----CCCCCC--hhhHHHHHHHHHHcCceEEEEeee
Q 039518 303 VDWH-ANDGILLKEVDRVLRPNGYFVYSAPPAY-----RKDKDY--PLIWDKLVNLTTAMCWKLIARKIQ 364 (617)
Q Consensus 303 ~h~~-~d~~~~L~el~RvLrPGG~Liis~p~~~-----~~~~~~--~~~W~~le~La~~~gw~~v~~~~~ 364 (617)
.|.+ ++...+|+.+...|+|||.+++-..... +...+. .+.-+.+.++.+++|++++..+.|
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 9998 4567899999999999999999653211 111121 133455999999999999987655
No 115
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.69 E-value=1.1e-07 Score=93.76 Aligned_cols=99 Identities=16% Similarity=0.128 Sum_probs=71.5
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCC-CCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQ-LPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~-Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||+|||+|.++..+++.... ..++++|+++.+++.++++ +. ++.+..+|+.. ++.....+|.|+..
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~-~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~- 116 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPK-GRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE- 116 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE-
Confidence 45667999999999999988765322 3788899999999988764 33 35666666533 22222346766532
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
...+...++.++.++|+|||++++..+
T Consensus 117 ----~~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 117 ----GGRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred ----CCcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 123567899999999999999999874
No 116
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.67 E-value=1.2e-07 Score=104.99 Aligned_cols=127 Identities=15% Similarity=0.180 Sum_probs=87.0
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCC----CCCCCeeEE
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLP----YPSSSFEMV 296 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lp----f~d~sFDlV 296 (617)
..+|.+|||+|||+|..+..+++.......++++|+++.+++.++++ |. ++.+...|+..++ +..++||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 45677899999999999999987622222678889999999888765 54 4677778877765 446789999
Q ss_pred Eec----c--ccccccc--------c-------hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHc-
Q 039518 297 HCS----R--CRVDWHA--------N-------DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAM- 354 (617)
Q Consensus 297 ~~s----~--~l~h~~~--------d-------~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~- 354 (617)
++. . ++.+.++ + ...+|.++.++|||||+++.++-..+....+ ..+..++++.
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene-----~~v~~~l~~~~ 404 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENE-----AQIEQFLARHP 404 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHH-----HHHHHHHHhCC
Confidence 952 1 1111110 0 2467999999999999999987544322221 2366666654
Q ss_pred Cce
Q 039518 355 CWK 357 (617)
Q Consensus 355 gw~ 357 (617)
+|+
T Consensus 405 ~~~ 407 (434)
T PRK14901 405 DWK 407 (434)
T ss_pred CcE
Confidence 455
No 117
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.66 E-value=9.5e-08 Score=106.02 Aligned_cols=127 Identities=15% Similarity=0.203 Sum_probs=85.2
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEe--
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHC-- 298 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~-- 298 (617)
..+|.+|||+|||+|..+..+++.......++++|+++.+++.++++ |+ ++.+..+|+..++ ++++||+|++
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~ 326 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDA 326 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcC
Confidence 45677899999999999888876421122678889999999888765 54 3677777877665 5678999994
Q ss_pred --ccccc-------ccccc----------hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHc-CceE
Q 039518 299 --SRCRV-------DWHAN----------DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAM-CWKL 358 (617)
Q Consensus 299 --s~~l~-------h~~~d----------~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~-gw~~ 358 (617)
+.... .|..+ ...+|.++.++|||||.+++++-.......+ ..+..+++.. +|+.
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene-----~~v~~~l~~~~~~~~ 401 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENE-----LQIEAFLQRHPEFSA 401 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHH-----HHHHHHHHhCCCCEE
Confidence 21110 11111 2358999999999999999998644332221 2256666654 3443
No 118
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.64 E-value=1.7e-07 Score=103.51 Aligned_cols=122 Identities=13% Similarity=0.167 Sum_probs=81.9
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEE--EEecCCCCCC--CCCCeeEEEe
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMI--SALSTKQLPY--PSSSFEMVHC 298 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~--~~~d~~~Lpf--~d~sFDlV~~ 298 (617)
.++.+|||+|||+|..+..+++... ...+.++|+++.+++.++++ |..+.+ ..+|....++ ++++||.|++
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 4567899999999999999887632 23788899999999888765 554433 3444444443 4678999984
Q ss_pred ----cc--ccccccc-----c----------hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHc
Q 039518 299 ----SR--CRVDWHA-----N----------DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAM 354 (617)
Q Consensus 299 ----s~--~l~h~~~-----d----------~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~ 354 (617)
+. .+.+.++ + ...+|.++.++|||||.+++++-.......+. .++.++++.
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~-----~v~~~l~~~ 387 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSE-----QIKAFLQEH 387 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHH-----HHHHHHHhC
Confidence 21 1111110 1 25689999999999999999986544332222 255565554
No 119
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.63 E-value=3.7e-08 Score=98.18 Aligned_cols=130 Identities=15% Similarity=0.199 Sum_probs=100.3
Q ss_pred EEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh---CCCcEEEEecCCCCCCCCCCeeEEEecccccccccc
Q 039518 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER---GIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHAN 308 (617)
Q Consensus 232 VLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er---g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d 308 (617)
++|||||.|.+...|...++. .+.-.|.|..|++.++.. ++.....++|-+.|+|.+++||+|+++. ..||..+
T Consensus 76 a~diGcs~G~v~rhl~~e~ve--kli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSl-slHW~Nd 152 (325)
T KOG2940|consen 76 AFDIGCSLGAVKRHLRGEGVE--KLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSL-SLHWTND 152 (325)
T ss_pred eeecccchhhhhHHHHhcchh--heeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhh-hhhhhcc
Confidence 999999999999999998865 677789999999988865 4456677889999999999999999886 5689989
Q ss_pred hHHHHHHHHHhccCCeEEEEEeCCCCC-----------------CCCCChhh---HHHHHHHHHHcCceEEEEeee
Q 039518 309 DGILLKEVDRVLRPNGYFVYSAPPAYR-----------------KDKDYPLI---WDKLVNLTTAMCWKLIARKIQ 364 (617)
Q Consensus 309 ~~~~L~el~RvLrPGG~Liis~p~~~~-----------------~~~~~~~~---W~~le~La~~~gw~~v~~~~~ 364 (617)
....+..+...|||+|.|+-+.-.... -...+-.+ -+.+-.++.++||..+....+
T Consensus 153 LPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDtD 228 (325)
T KOG2940|consen 153 LPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDTD 228 (325)
T ss_pred CchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceeccc
Confidence 999999999999999999876310000 00000011 223777888999988876544
No 120
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.61 E-value=3e-07 Score=97.31 Aligned_cols=119 Identities=12% Similarity=0.085 Sum_probs=82.9
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
.+|||+|||+|.++..++..... ..++++|+++.+++.|+++ +. ++.+..+|+.. ++++++||+|+|+--..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~-~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD-AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 46999999999999999876432 3688899999999988876 43 36777777633 23456899999872111
Q ss_pred -------------ccc-----------cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEE
Q 039518 304 -------------DWH-----------ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLI 359 (617)
Q Consensus 304 -------------h~~-----------~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v 359 (617)
+.+ +....++.++.++|+|||.+++.... . ...+.++....++..+
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~--------~--~~~~~~~~~~~~~~~~ 282 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN--------S--RVHLEEAYPDVPFTWL 282 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc--------C--HHHHHHHHhhCCCEEE
Confidence 111 01246789999999999999996531 1 2346666666666444
Q ss_pred E
Q 039518 360 A 360 (617)
Q Consensus 360 ~ 360 (617)
.
T Consensus 283 ~ 283 (307)
T PRK11805 283 E 283 (307)
T ss_pred E
Confidence 3
No 121
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.60 E-value=7.4e-08 Score=100.33 Aligned_cols=103 Identities=25% Similarity=0.308 Sum_probs=80.2
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh-----------CCCcEEEEecC------CCCCCCC
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER-----------GIGAMISALST------KQLPYPS 290 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er-----------g~~~~~~~~d~------~~Lpf~d 290 (617)
++..+||+|||-|.-+...-+.++. .+.++||++..++.|++| ..++.+..+|. ..+++++
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~--~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIG--EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred cccccceeccCCcccHhHhhhhccc--ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 4455999999999888777666665 678889999999999887 12466777763 3456666
Q ss_pred CCeeEEEecccccccccc---hHHHHHHHHHhccCCeEEEEEeCC
Q 039518 291 SSFEMVHCSRCRVDWHAN---DGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 291 ~sFDlV~~s~~l~h~~~d---~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
.+||+|-|.+|+|.--+. ...+|.++.+.|+|||+|+-+.|.
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 679999999887654332 456899999999999999999874
No 122
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.59 E-value=1e-07 Score=98.63 Aligned_cols=109 Identities=13% Similarity=0.206 Sum_probs=77.1
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEec-
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCS- 299 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s- 299 (617)
..++.+|||+|||+|..+..+++.......+.++|+++.+++.++++ ++ ++.+...|...++...+.||.|++.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 35677899999999999998877522112678889999999888765 43 3566777776666555679999852
Q ss_pred ---cc--cc-------cccc--------chHHHHHHHHHhccCCeEEEEEeCCCC
Q 039518 300 ---RC--RV-------DWHA--------NDGILLKEVDRVLRPNGYFVYSAPPAY 334 (617)
Q Consensus 300 ---~~--l~-------h~~~--------d~~~~L~el~RvLrPGG~Liis~p~~~ 334 (617)
.. +. .+.+ ....+|.++.++|||||+++.++-...
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 10 00 0110 123489999999999999999975433
No 123
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.59 E-value=2.3e-07 Score=92.17 Aligned_cols=104 Identities=17% Similarity=0.339 Sum_probs=67.8
Q ss_pred CCCeEEEECCCCc----HHHHHhccC----CCcEEEeeecCCcHHHHHHHHHh--------CC-----------------
Q 039518 228 GVFQVLDVGCGVA----SFSAFLLPL----DIQTMSFAPKDGHENQIQFALER--------GI----------------- 274 (617)
Q Consensus 228 ~g~rVLDIGCGtG----~~a~~La~~----gv~~v~v~~iDis~~~lq~A~er--------g~----------------- 274 (617)
+..+|+..||++| +++..|.+. ...-+.|.+.|+++.+++.|++- ++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4568999999999 455555551 12246899999999999999753 11
Q ss_pred --------CcEEEEecCCCCCCCCCCeeEEEeccccccccc-chHHHHHHHHHhccCCeEEEEEeC
Q 039518 275 --------GAMISALSTKQLPYPSSSFEMVHCSRCRVDWHA-NDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 275 --------~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~-d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.+.+...|+.+.+.+.+.||+|+|.++++.+.+ ....++..+++.|+|||+|++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 245566666553345678999999999999873 346799999999999999999753
No 124
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.58 E-value=4.7e-07 Score=91.38 Aligned_cols=133 Identities=14% Similarity=0.104 Sum_probs=89.5
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHH-hCC----------------CcEEEEecCCCCCCC
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALE-RGI----------------GAMISALSTKQLPYP 289 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~e-rg~----------------~~~~~~~d~~~Lpf~ 289 (617)
.++.+||+.|||.|....+|+++|. +|+++|+|+.+++.+.+ ++. .+.+.++|+..++..
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 4566899999999999999999986 67888999999999844 332 245677888777643
Q ss_pred C-CCeeEEEecccccccc-cchHHHHHHHHHhccCCeEEEEEeCC---CCCCCCCChhhHHHHHHHHHHcCceEEEEee
Q 039518 290 S-SSFEMVHCSRCRVDWH-ANDGILLKEVDRVLRPNGYFVYSAPP---AYRKDKDYPLIWDKLVNLTTAMCWKLIARKI 363 (617)
Q Consensus 290 d-~sFDlV~~s~~l~h~~-~d~~~~L~el~RvLrPGG~Liis~p~---~~~~~~~~~~~W~~le~La~~~gw~~v~~~~ 363 (617)
. ++||+|+=..+++-++ +....+.+.+.++|+|||.+++.+-. .....|.....-++++++.. .+|++...+.
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEEE
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 3 4799999766666555 44678999999999999994443321 11112222223345777776 6777766443
No 125
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.57 E-value=1.1e-07 Score=95.23 Aligned_cols=99 Identities=15% Similarity=0.106 Sum_probs=68.2
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
+++|.+|||||||+|.+++.|+...-..-.+..+|..+..++.|+++ +. ++.+..+|...---....||.|++..
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~ 149 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTA 149 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESS
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEee
Confidence 56788999999999999999987622222566789999999988876 44 57788887643322456899999876
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
..... | ..+.+.|++||++++-..
T Consensus 150 a~~~i---p----~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 150 AVPEI---P----EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp BBSS---------HHHHHTEEEEEEEEEEES
T ss_pred ccchH---H----HHHHHhcCCCcEEEEEEc
Confidence 54322 2 346677999999999653
No 126
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.56 E-value=2.9e-07 Score=101.83 Aligned_cols=129 Identities=13% Similarity=0.176 Sum_probs=86.8
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC-cEEEEecCCCCC-CCCCCeeEEEec
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG-AMISALSTKQLP-YPSSSFEMVHCS 299 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~-~~~~~~d~~~Lp-f~d~sFDlV~~s 299 (617)
..+|.+|||+|||+|..+.++++.......++++|+++.+++.++++ |+. +.+...|...++ +.+++||.|++.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 45677899999999999988887521123688889999999888765 443 567777877765 456789999962
Q ss_pred c-c--ccccccc------------------hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHH-cCce
Q 039518 300 R-C--RVDWHAN------------------DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTA-MCWK 357 (617)
Q Consensus 300 ~-~--l~h~~~d------------------~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~-~gw~ 357 (617)
- | ...+..+ ..++|.++.++|||||.+++++-.......+ +.+..++++ -+|+
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne-----~vv~~fl~~~~~~~ 389 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENT-----EVVKRFVYEQKDAE 389 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCH-----HHHHHHHHhCCCcE
Confidence 1 1 1111111 2456999999999999999998654332222 225555553 3454
Q ss_pred EE
Q 039518 358 LI 359 (617)
Q Consensus 358 ~v 359 (617)
.+
T Consensus 390 ~~ 391 (431)
T PRK14903 390 VI 391 (431)
T ss_pred Ee
Confidence 43
No 127
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.54 E-value=8.8e-07 Score=91.15 Aligned_cols=122 Identities=14% Similarity=0.090 Sum_probs=82.6
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC--CCcEEEEecCCC-CCC-CCCCeeEEEecccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG--IGAMISALSTKQ-LPY-PSSSFEMVHCSRCRVD 304 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg--~~~~~~~~d~~~-Lpf-~d~sFDlV~~s~~l~h 304 (617)
+.+|||+|||+|.++..+++.... ..++++|+++.+++.|+++- ....+..+|..+ ++- ..++||+|+++--...
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~-~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDG-IELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 346999999999999998865322 26788999999999988762 124667777643 221 1357999998742221
Q ss_pred c------c---------------cc----hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEE
Q 039518 305 W------H---------------AN----DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLI 359 (617)
Q Consensus 305 ~------~---------------~d----~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v 359 (617)
. . .+ ...++..+.++|+|||.+++..... . -..+..++++.||+..
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~-------~--~~~v~~~l~~~g~~~~ 236 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER-------Q--APLAVEAFARAGLIAR 236 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc-------h--HHHHHHHHHHCCCCce
Confidence 0 0 01 1357778889999999999976411 1 3457777788887655
Q ss_pred E
Q 039518 360 A 360 (617)
Q Consensus 360 ~ 360 (617)
.
T Consensus 237 ~ 237 (251)
T TIGR03704 237 V 237 (251)
T ss_pred e
Confidence 4
No 128
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.53 E-value=2.9e-07 Score=88.68 Aligned_cols=96 Identities=10% Similarity=-0.043 Sum_probs=71.5
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---IGAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
.++.+|||+|||+|.++..+++++. .++++|+++.+++.++++. .++.+..+|+.++++++..||.|+++.- .
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~P-y 87 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLP-Y 87 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCC-c
Confidence 4556799999999999999998843 6788899999999998773 2577888999988888778999997642 2
Q ss_pred ccccchHHHHHHHHHh--ccCCeEEEEE
Q 039518 304 DWHANDGILLKEVDRV--LRPNGYFVYS 329 (617)
Q Consensus 304 h~~~d~~~~L~el~Rv--LrPGG~Liis 329 (617)
+.. ...+..+.+. +.++|.+++.
T Consensus 88 ~~~---~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 88 NIS---TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred ccH---HHHHHHHHhcCCCcceEEEEEE
Confidence 322 2333333332 4578888775
No 129
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.52 E-value=4.5e-07 Score=91.42 Aligned_cols=101 Identities=19% Similarity=0.282 Sum_probs=76.6
Q ss_pred eEEEECCCCcHHHHHhccCCCc-EEEeeecCCcHHHHHHHHHhCC------CcEEEEecCCC--CCCCCCCeeEEEeccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQ-TMSFAPKDGHENQIQFALERGI------GAMISALSTKQ--LPYPSSSFEMVHCSRC 301 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~-~v~v~~iDis~~~lq~A~erg~------~~~~~~~d~~~--Lpf~d~sFDlV~~s~~ 301 (617)
+||+||||.|.....+++-... .+.+.+.|.|+.+++..+++.. .+.+...+... -|...+++|+|++.++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 5999999999988888876432 2578889999999999887622 12222222222 2456789999999988
Q ss_pred cccccc-chHHHHHHHHHhccCCeEEEEEeC
Q 039518 302 RVDWHA-NDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 302 l~h~~~-d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+...++ ....++.++.++|||||.+++-+-
T Consensus 154 LSAi~pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred EeccChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 877763 356799999999999999999763
No 130
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.52 E-value=4.2e-07 Score=96.77 Aligned_cols=97 Identities=10% Similarity=0.066 Sum_probs=70.4
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
.++.+|||+|||+|.++..+++.......+.++|+++.+++.|+++ +. ++.+..+|....+...++||+|++...
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g 158 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVG 158 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCc
Confidence 4566799999999999999987532212467889999999888764 43 366677776655545568999998643
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
..+ ....+.+.|+|||.+++..
T Consensus 159 ~~~-------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 159 VDE-------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hHH-------hHHHHHHhcCCCCEEEEEe
Confidence 322 2345678999999998865
No 131
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=6e-07 Score=91.42 Aligned_cols=121 Identities=19% Similarity=0.211 Sum_probs=90.3
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEE
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMV 296 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV 296 (617)
+.+.+|++|||.|.|+|.++.+|+.. +... .+...|+.++..+.|+++ ++ .+.+...|+.+.-+++ .||.|
T Consensus 90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G-~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav 167 (256)
T COG2519 90 LGISPGSRVLEAGTGSGALTAYLARAVGPEG-HVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAV 167 (256)
T ss_pred cCCCCCCEEEEcccCchHHHHHHHHhhCCCc-eEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEE
Confidence 45678999999999999999999963 3333 666779999999999887 22 2666677776665555 89999
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
+. ..+ +|-.++..+.++|+|||.+++-.|.... -++....+++.||..+.
T Consensus 168 ~L-----Dmp-~PW~~le~~~~~Lkpgg~~~~y~P~veQ--------v~kt~~~l~~~g~~~ie 217 (256)
T COG2519 168 FL-----DLP-DPWNVLEHVSDALKPGGVVVVYSPTVEQ--------VEKTVEALRERGFVDIE 217 (256)
T ss_pred EE-----cCC-ChHHHHHHHHHHhCCCcEEEEEcCCHHH--------HHHHHHHHHhcCccchh
Confidence 83 334 8999999999999999999998874321 23344445555887554
No 132
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.51 E-value=4e-07 Score=101.00 Aligned_cols=128 Identities=17% Similarity=0.250 Sum_probs=84.1
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCC--CCCCCeeEEEe
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLP--YPSSSFEMVHC 298 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lp--f~d~sFDlV~~ 298 (617)
..++.+|||+|||+|..+..+++.......++++|+++.+++.++++ |+ ++.+..+|+..++ ++ ++||+|++
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~ 326 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILV 326 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence 34567899999999999999987631123788899999999888765 43 3677777876653 33 68999996
Q ss_pred ccc------ccc-----ccc---c-------hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHc-Cc
Q 039518 299 SRC------RVD-----WHA---N-------DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAM-CW 356 (617)
Q Consensus 299 s~~------l~h-----~~~---d-------~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~-gw 356 (617)
.-- +.+ |.. + ...+|.++.++|||||.+++++-...... . -..+..++++. .|
T Consensus 327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~E--n---e~vv~~~l~~~~~~ 401 (444)
T PRK14902 327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEE--N---EEVIEAFLEEHPEF 401 (444)
T ss_pred cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhh--h---HHHHHHHHHhCCCc
Confidence 421 000 110 0 13579999999999999998875433221 1 12355555554 35
Q ss_pred eEE
Q 039518 357 KLI 359 (617)
Q Consensus 357 ~~v 359 (617)
+.+
T Consensus 402 ~~~ 404 (444)
T PRK14902 402 ELV 404 (444)
T ss_pred EEe
Confidence 543
No 133
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.50 E-value=9e-07 Score=89.91 Aligned_cols=112 Identities=16% Similarity=0.304 Sum_probs=79.5
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHAN 308 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d 308 (617)
...|-|+|||.+.++..- ...+..+++.+ ++-.+...|+.++|+++++.|++++.. --+..|
T Consensus 181 ~~vIaD~GCGEakiA~~~-~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d~svDvaV~CL--SLMgtn 242 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIASSE-RHKVHSFDLVA---------------VNERVIACDMRNVPLEDESVDVAVFCL--SLMGTN 242 (325)
T ss_pred ceEEEecccchhhhhhcc-ccceeeeeeec---------------CCCceeeccccCCcCccCcccEEEeeH--hhhccc
Confidence 456999999999887621 11333333322 224567889999999999999999753 333468
Q ss_pred hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEeee
Q 039518 309 DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQ 364 (617)
Q Consensus 309 ~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~~~ 364 (617)
...++.|++|+|+|||.|+|..... ...+ -..+.+.+..+||.+......
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAEv~S--Rf~d----v~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAEVKS--RFSD----VKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEehhh--hccc----HHHHHHHHHHcCCeeeehhhh
Confidence 9999999999999999999986422 2222 234788889999998775443
No 134
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.50 E-value=2.9e-06 Score=83.00 Aligned_cols=121 Identities=16% Similarity=0.149 Sum_probs=85.2
Q ss_pred CCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCC-CCCCCCCCeeE
Q 039518 222 GNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTK-QLPYPSSSFEM 295 (617)
Q Consensus 222 ~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~-~Lpf~d~sFDl 295 (617)
.++++.++++++|||||+|+++..++..+.. ..++++|-++++++..+++ +. ++.+..+++. .|+-.+ +||.
T Consensus 28 s~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~-~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~da 105 (187)
T COG2242 28 SKLRPRPGDRLWDIGAGTGSITIEWALAGPS-GRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDA 105 (187)
T ss_pred HhhCCCCCCEEEEeCCCccHHHHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCE
Confidence 4567788899999999999999999944443 3677888888887766554 43 4566777653 333222 7999
Q ss_pred EEecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCce
Q 039518 296 VHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWK 357 (617)
Q Consensus 296 V~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~ 357 (617)
|+.... .+.+..|+.+...|||||.+++..-. .+. -....+..++.|+.
T Consensus 106 iFIGGg-----~~i~~ile~~~~~l~~ggrlV~nait-----lE~---~~~a~~~~~~~g~~ 154 (187)
T COG2242 106 IFIGGG-----GNIEEILEAAWERLKPGGRLVANAIT-----LET---LAKALEALEQLGGR 154 (187)
T ss_pred EEECCC-----CCHHHHHHHHHHHcCcCCeEEEEeec-----HHH---HHHHHHHHHHcCCc
Confidence 996642 36778999999999999999996521 111 22355556677773
No 135
>PRK00811 spermidine synthase; Provisional
Probab=98.49 E-value=5.9e-07 Score=94.03 Aligned_cols=101 Identities=13% Similarity=0.089 Sum_probs=74.0
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC----------CCcEEEEecCCC-CCCCCCCeeEEE
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG----------IGAMISALSTKQ-LPYPSSSFEMVH 297 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg----------~~~~~~~~d~~~-Lpf~d~sFDlV~ 297 (617)
+.+||+||||+|..+..++++. .+..++.+|+++.+++.|++.. .++.+..+|... +...+++||+|+
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4579999999999999998762 2237888999999999998752 235677777543 233467899999
Q ss_pred ecccccccccc----hHHHHHHHHHhccCCeEEEEEeC
Q 039518 298 CSRCRVDWHAN----DGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 298 ~s~~l~h~~~d----~~~~L~el~RvLrPGG~Liis~p 331 (617)
+.. ..++... ..++++.+.+.|+|||.+++...
T Consensus 156 ~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 156 VDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred ECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 753 2232211 25678999999999999998643
No 136
>PHA03412 putative methyltransferase; Provisional
Probab=98.48 E-value=5.4e-07 Score=91.54 Aligned_cols=96 Identities=8% Similarity=0.064 Sum_probs=71.9
Q ss_pred CCeEEEECCCCcHHHHHhccCC--CcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLD--IQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~g--v~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~ 306 (617)
+.+|||+|||+|.++..++++. .....++++|+++.+++.|+++...+.+...|+...++ +++||+|+++--.....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCcc
Confidence 4579999999999999887641 11247899999999999999887678888888876654 56899999984333111
Q ss_pred -----------cchHHHHHHHHHhccCCeE
Q 039518 307 -----------ANDGILLKEVDRVLRPNGY 325 (617)
Q Consensus 307 -----------~d~~~~L~el~RvLrPGG~ 325 (617)
.-...++..+.+++++|+.
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1134578888897777775
No 137
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=8.7e-07 Score=88.30 Aligned_cols=95 Identities=17% Similarity=0.188 Sum_probs=70.7
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecC-CCCCCCCCCeeEEEe
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALST-KQLPYPSSSFEMVHC 298 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~-~~Lpf~d~sFDlV~~ 298 (617)
.+.++.+|||||||+|..++.|++..- .|..+|..+...+.|+++ |. ++.+.++|. ..+| +...||.|+.
T Consensus 69 ~~~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~-~~aPyD~I~V 144 (209)
T COG2518 69 ELKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP-EEAPYDRIIV 144 (209)
T ss_pred CCCCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC-CCCCcCEEEE
Confidence 345677899999999999999998755 455568888998999875 44 577777775 3333 3478999998
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
..+....+ ..+.+-|+|||.+++-.
T Consensus 145 taaa~~vP-------~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 145 TAAAPEVP-------EALLDQLKPGGRLVIPV 169 (209)
T ss_pred eeccCCCC-------HHHHHhcccCCEEEEEE
Confidence 76554433 34556789999999965
No 138
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.45 E-value=5.9e-07 Score=91.20 Aligned_cols=100 Identities=20% Similarity=0.178 Sum_probs=77.6
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~ 306 (617)
.+..+|||||+|+|.++..++++.+.. .++-.|. +..++.+++ ...+.+..+|+. -++|. +|+++..+++|+|.
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l-~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~ 172 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNL-RATVFDL-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWS 172 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTS-EEEEEE--HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCC-cceeecc-Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhhhcc
Confidence 445679999999999999999886544 5566786 556677777 667889999986 55665 99999999999998
Q ss_pred cc-hHHHHHHHHHhccCC--eEEEEEeCC
Q 039518 307 AN-DGILLKEVDRVLRPN--GYFVYSAPP 332 (617)
Q Consensus 307 ~d-~~~~L~el~RvLrPG--G~Liis~p~ 332 (617)
++ -..+|+++++.|+|| |.++|.+..
T Consensus 173 d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 173 DEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 33 466899999999999 999998763
No 139
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=2.9e-06 Score=88.80 Aligned_cols=119 Identities=13% Similarity=0.225 Sum_probs=81.8
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEeccccccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSRCRVDW 305 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~ 305 (617)
+|||+|||+|.++..++..... ..|+++|+|+.+++.|+++ ++ ++.+...|. ++--.++||+|+||--.+.-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dl--f~~~~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRVLVVQSDL--FEPLRGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeec--ccccCCceeEEEeCCCCCCC
Confidence 5999999999999999998765 3788999999999999876 43 222222221 22123489999998432221
Q ss_pred c----------cch--------------HHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcC-ceEEE
Q 039518 306 H----------AND--------------GILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMC-WKLIA 360 (617)
Q Consensus 306 ~----------~d~--------------~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~g-w~~v~ 360 (617)
. -+| ..++.++.+.|+|||.+++..-. .. -+.+.++..+.| |..+.
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~-------~q--~~~v~~~~~~~~~~~~v~ 260 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL-------TQ--GEAVKALFEDTGFFEIVE 260 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC-------Cc--HHHHHHHHHhcCCceEEE
Confidence 1 011 34688899999999999997531 11 345888889999 55444
Q ss_pred E
Q 039518 361 R 361 (617)
Q Consensus 361 ~ 361 (617)
.
T Consensus 261 ~ 261 (280)
T COG2890 261 T 261 (280)
T ss_pred E
Confidence 3
No 140
>PRK04457 spermidine synthase; Provisional
Probab=98.41 E-value=7.6e-07 Score=92.24 Aligned_cols=101 Identities=12% Similarity=0.093 Sum_probs=73.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC------CCcEEEEecCCCC-CCCCCCeeEEEecc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG------IGAMISALSTKQL-PYPSSSFEMVHCSR 300 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg------~~~~~~~~d~~~L-pf~d~sFDlV~~s~ 300 (617)
++.+|||||||+|.++..+++.... ..++.+|+++++++.|++.. .++.+..+|.... .-..++||+|++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPD-TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 3457999999999999999876533 37888999999999999862 2356777775332 22236799999752
Q ss_pred cccc--ccc--chHHHHHHHHHhccCCeEEEEEe
Q 039518 301 CRVD--WHA--NDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 301 ~l~h--~~~--d~~~~L~el~RvLrPGG~Liis~ 330 (617)
... .+. ....+++++.++|+|||.+++..
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 111 111 13689999999999999999953
No 141
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.40 E-value=2e-06 Score=85.29 Aligned_cols=119 Identities=18% Similarity=0.343 Sum_probs=81.6
Q ss_pred EEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCC-CC--CCCCCeeEEEeccccc
Q 039518 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQ-LP--YPSSSFEMVHCSRCRV 303 (617)
Q Consensus 232 VLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~-Lp--f~d~sFDlV~~s~~l~ 303 (617)
+||||||.|.+...+|...... .+.++|+....+..|.++ ++ ++.+..+|+.. ++ ++++++|.|+..+ --
T Consensus 21 ~lEIG~G~G~~l~~~A~~~Pd~-n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F-PD 98 (195)
T PF02390_consen 21 ILEIGCGKGEFLIELAKRNPDI-NFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF-PD 98 (195)
T ss_dssp EEEET-TTSHHHHHHHHHSTTS-EEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred EEEecCCCCHHHHHHHHHCCCC-CEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC-CC
Confidence 9999999999999999887654 777889988888766554 44 57777777765 32 4678999999654 33
Q ss_pred ccccc--------hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHH--cCceEEE
Q 039518 304 DWHAN--------DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTA--MCWKLIA 360 (617)
Q Consensus 304 h~~~d--------~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~--~gw~~v~ 360 (617)
+|+.. -..+|..+.++|+|||.+.+.+ +.....+.+.+.++. .+|+.+.
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T--------D~~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT--------DVEEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE--------S-HHHHHHHHHHHHHHSTTEEEE-
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe--------CCHHHHHHHHHHHHhcCcCeEEcc
Confidence 44421 1568999999999999999987 333344556666665 4777664
No 142
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.39 E-value=5.7e-06 Score=85.83 Aligned_cols=133 Identities=17% Similarity=0.223 Sum_probs=94.2
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHH---HHHHh---CC--------------------------
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQ---FALER---GI-------------------------- 274 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq---~A~er---g~-------------------------- 274 (617)
+...+||--|||.|.++-.++.+|. .+.+.|.|--|+- +.... ..
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~---~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGY---AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccc---eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence 3456799999999999999999977 5677888888742 22221 00
Q ss_pred -------------CcEEEEecCCCCCCCC---CCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCC
Q 039518 275 -------------GAMISALSTKQLPYPS---SSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDK 338 (617)
Q Consensus 275 -------------~~~~~~~d~~~Lpf~d---~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~ 338 (617)
+.....+|+..+..++ ++||+|++.+ ++.-..+.-.+|..+.++|||||+++=.+|..+...+
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~ 210 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEP 210 (270)
T ss_pred CCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhccCCEEEecCCccccCCC
Confidence 0112223333332233 6899999875 4444567888999999999999998888886554444
Q ss_pred C-------ChhhHHHHHHHHHHcCceEEEEee
Q 039518 339 D-------YPLIWDKLVNLTTAMCWKLIARKI 363 (617)
Q Consensus 339 ~-------~~~~W~~le~La~~~gw~~v~~~~ 363 (617)
. -...|+++..+++..||+.+..+.
T Consensus 211 ~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 211 MSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 3 344599999999999999987554
No 143
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.36 E-value=1.1e-06 Score=102.90 Aligned_cols=123 Identities=13% Similarity=0.094 Sum_probs=85.5
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC---CcEEEEecCCCC-CCCCCCeeEEEec
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI---GAMISALSTKQL-PYPSSSFEMVHCS 299 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~---~~~~~~~d~~~L-pf~d~sFDlV~~s 299 (617)
.+.+|||+|||+|.++..++..|.. .++++|+++.+++.|+++ +. .+.+..+|+.+. .-..++||+|++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 3567999999999999999987654 578889999999999875 33 367777775332 1114689999985
Q ss_pred ccccc----------cccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 300 RCRVD----------WHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 300 ~~l~h----------~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
--... ...+...++..+.++|+|||.++++..... .....+.+...|+.+...
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~---------~~~~~~~~~~~g~~~~~i 678 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG---------FKMDEEGLAKLGLKAEEI 678 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc---------CChhHHHHHhCCCeEEEE
Confidence 32111 112345678889999999999988764221 112355667778776653
No 144
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.34 E-value=2e-07 Score=79.10 Aligned_cols=91 Identities=21% Similarity=0.241 Sum_probs=60.2
Q ss_pred EeccccccchhhhccCC-CeEEEEeccCCCCchhHHHHhhcccc---cccccCCCCCCCCCccchhhccccccccccCCC
Q 039518 472 MDMNAYCGGFAVALNSL-PVWVMNIVPISMKNTLSAIYNRGILG---AFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGE 547 (617)
Q Consensus 472 mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~~~l~~~~~RGlig---~~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~ 547 (617)
||+|||.|-+++.|.++ +.=|..+-+.. ..++.+-++.--. ..+.=-+.++.-+.+||+|++.++|.++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~--~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~----- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISE--EMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL----- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-H--HHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-----
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCH--HHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-----
Confidence 79999999999999887 54333333222 4555555554321 2211123333324999999999999853
Q ss_pred CCChhhHHhhhhhcccCCceEEE
Q 039518 548 VCSLEDIMLEMDLIIRPQGFIII 570 (617)
Q Consensus 548 ~c~~~~~l~e~dRilRP~G~~i~ 570 (617)
-....++-|+-|+|||||+++|
T Consensus 74 -~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 -EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -SHHHHHHHHHHHHEEEEEEEEE
T ss_pred -cCHHHHHHHHHHHcCcCeEEeC
Confidence 4567899999999999999986
No 145
>PRK01581 speE spermidine synthase; Validated
Probab=98.34 E-value=5.7e-06 Score=89.03 Aligned_cols=126 Identities=17% Similarity=0.161 Sum_probs=85.4
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh------------CCCcEEEEecCCC-CCCCCCCeeE
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER------------GIGAMISALSTKQ-LPYPSSSFEM 295 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er------------g~~~~~~~~d~~~-Lpf~d~sFDl 295 (617)
..+||+||||+|..+..+++.. .+..++.+|+++++++.|++. ..++.+.++|+.+ +...++.||+
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 3579999999999988888753 234788899999999999962 2356777777644 3334568999
Q ss_pred EEecccccccc-----cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 296 VHCSRCRVDWH-----ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 296 V~~s~~l~h~~-----~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
|++.. ..+.. ..-..+++.+.+.|+|||.+++...... ........+.+.+++.++.+..
T Consensus 230 IIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~----~~~~~~~~i~~tL~~af~~v~~ 294 (374)
T PRK01581 230 IIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPA----DAPLVYWSIGNTIEHAGLTVKS 294 (374)
T ss_pred EEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChh----hhHHHHHHHHHHHHHhCCceEE
Confidence 99762 11111 0125689999999999999988643211 1111222366677777776654
No 146
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.32 E-value=2.6e-06 Score=87.48 Aligned_cols=122 Identities=18% Similarity=0.177 Sum_probs=85.5
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCC---CCCe
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYP---SSSF 293 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~---d~sF 293 (617)
+.+.||++|||.|.|+|+++..|+.. +... .+...|+++...+.|+++ |+ .+.+...|+..-.|. ++.|
T Consensus 36 l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G-~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~ 114 (247)
T PF08704_consen 36 LDIRPGSRVLEAGTGSGSLTHALARAVGPTG-HVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDF 114 (247)
T ss_dssp TT--TT-EEEEE--TTSHHHHHHHHHHTTTS-EEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSE
T ss_pred cCCCCCCEEEEecCCcHHHHHHHHHHhCCCe-EEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcc
Confidence 56688999999999999999999864 3333 556668999999999876 44 467888887543332 3679
Q ss_pred eEEEecccccccccchHHHHHHHHHhc-cCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 294 EMVHCSRCRVDWHANDGILLKEVDRVL-RPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 294 DlV~~s~~l~h~~~d~~~~L~el~RvL-rPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
|.|+. .++ +|-.++..+.++| ||||.++.-.|... .-.+..+.+++.||..+.
T Consensus 115 DavfL-----Dlp-~Pw~~i~~~~~~L~~~gG~i~~fsP~ie--------Qv~~~~~~L~~~gf~~i~ 168 (247)
T PF08704_consen 115 DAVFL-----DLP-DPWEAIPHAKRALKKPGGRICCFSPCIE--------QVQKTVEALREHGFTDIE 168 (247)
T ss_dssp EEEEE-----ESS-SGGGGHHHHHHHE-EEEEEEEEEESSHH--------HHHHHHHHHHHTTEEEEE
T ss_pred cEEEE-----eCC-CHHHHHHHHHHHHhcCCceEEEECCCHH--------HHHHHHHHHHHCCCeeeE
Confidence 99973 344 7888999999999 99999999888532 123455566678998774
No 147
>PRK03612 spermidine synthase; Provisional
Probab=98.32 E-value=4.8e-06 Score=94.29 Aligned_cols=124 Identities=14% Similarity=0.064 Sum_probs=86.4
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh------------CCCcEEEEecCCC-CCCCCCCee
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER------------GIGAMISALSTKQ-LPYPSSSFE 294 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er------------g~~~~~~~~d~~~-Lpf~d~sFD 294 (617)
+.++|||||||+|..+..++++.. +..++.+|+++++++.|+++ ..++++...|..+ +...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 346799999999999999987632 23788899999999999983 1346677777644 222346899
Q ss_pred EEEecccccccccc-----hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCce
Q 039518 295 MVHCSRCRVDWHAN-----DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWK 357 (617)
Q Consensus 295 lV~~s~~l~h~~~d-----~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~ 357 (617)
+|++.. ..+.... ..++++.+.+.|+|||.+++...+... .......+.+.+++.||.
T Consensus 376 vIi~D~-~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~----~~~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 376 VIIVDL-PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYF----APKAFWSIEATLEAAGLA 438 (521)
T ss_pred EEEEeC-CCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCccc----chHHHHHHHHHHHHcCCE
Confidence 999863 2222111 245889999999999999986532221 122234577777888883
No 148
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.30 E-value=3.7e-06 Score=88.22 Aligned_cols=101 Identities=12% Similarity=0.200 Sum_probs=74.9
Q ss_pred CeEEEECCCCc----HHHHHhccCC---CcEEEeeecCCcHHHHHHHHHh--------CC--------------------
Q 039518 230 FQVLDVGCGVA----SFSAFLLPLD---IQTMSFAPKDGHENQIQFALER--------GI-------------------- 274 (617)
Q Consensus 230 ~rVLDIGCGtG----~~a~~La~~g---v~~v~v~~iDis~~~lq~A~er--------g~-------------------- 274 (617)
.||+..||+|| +++..|.+.. ..-+.|.+.|++..+++.|++- ++
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 58999999999 4555555531 1135799999999999999863 11
Q ss_pred --------CcEEEEecCCCCCCC-CCCeeEEEecccccccc-cchHHHHHHHHHhccCCeEEEEEe
Q 039518 275 --------GAMISALSTKQLPYP-SSSFEMVHCSRCRVDWH-ANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 275 --------~~~~~~~d~~~Lpf~-d~sFDlV~~s~~l~h~~-~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.+.+...|+.+.+++ .+.||+|+|.++++++. +....++..+.+.|+|||+|++..
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 123444555444443 57899999999999886 346779999999999999998864
No 149
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.28 E-value=7.1e-06 Score=91.12 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=82.2
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCC----CCCCCCCeeEEE
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQ----LPYPSSSFEMVH 297 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~----Lpf~d~sFDlV~ 297 (617)
.++.+|||+|||+|.++..|++.+. .+.++|+++.+++.|+++ +. ++.+..+|+.+ +++.+++||+|+
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence 4567899999999999999998753 678889999999998875 33 47788888643 345567899999
Q ss_pred ecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 298 CSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 298 ~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
+.--. . .....+..+.+ ++|++.++++..+... -..+..+ ...||++...
T Consensus 373 ~dPPr---~-g~~~~~~~l~~-~~~~~ivyvSCnp~tl--------aRDl~~L-~~~gY~l~~i 422 (443)
T PRK13168 373 LDPPR---A-GAAEVMQALAK-LGPKRIVYVSCNPATL--------ARDAGVL-VEAGYRLKRA 422 (443)
T ss_pred ECcCC---c-ChHHHHHHHHh-cCCCeEEEEEeChHHh--------hccHHHH-hhCCcEEEEE
Confidence 75322 2 23345555555 6999999999753321 1124444 3567887754
No 150
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.25 E-value=3.3e-06 Score=86.08 Aligned_cols=98 Identities=10% Similarity=0.074 Sum_probs=70.5
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCC-C-----CCCCCeeEE
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQL-P-----YPSSSFEMV 296 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~L-p-----f~d~sFDlV 296 (617)
.++|||+|||+|..+..++..-.....++.+|+++.+++.|+++ |+ .+.+..+++.+. + .++++||+|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 44699999999998887776422223678889999999988875 43 366777776432 2 124689999
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+.-. .......++..+.++|||||.+++..
T Consensus 149 fiDa----~k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 149 FVDA----DKPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EECC----CHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 8542 22345678999999999999988754
No 151
>PLN02366 spermidine synthase
Probab=98.25 E-value=4.5e-06 Score=88.48 Aligned_cols=101 Identities=14% Similarity=0.090 Sum_probs=72.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---------CCcEEEEecCCCC--CCCCCCeeEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---------IGAMISALSTKQL--PYPSSSFEMV 296 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---------~~~~~~~~d~~~L--pf~d~sFDlV 296 (617)
..++||+||||.|..+..+++. ..+..++.+|+++.+++.|++.. .++.+..+|.... ..+++.||+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 3567999999999999999876 23346777899999999998852 2467777775322 1235689999
Q ss_pred Eecccccccccc----hHHHHHHHHHhccCCeEEEEEe
Q 039518 297 HCSRCRVDWHAN----DGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 297 ~~s~~l~h~~~d----~~~~L~el~RvLrPGG~Liis~ 330 (617)
++-. ..++... ...+++.+.+.|+|||.++...
T Consensus 170 i~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDS-SDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 9743 2222211 2468999999999999998754
No 152
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.20 E-value=9.8e-06 Score=88.76 Aligned_cols=102 Identities=12% Similarity=0.031 Sum_probs=71.6
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC---CcEEEEecCCCCC----CCCCCeeEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI---GAMISALSTKQLP----YPSSSFEMV 296 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~---~~~~~~~d~~~Lp----f~d~sFDlV 296 (617)
++.+|||+|||+|.++..++..+. ..++++|+++.+++.|+++ ++ ++.+..+|+.+.- ...++||+|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 356799999999999987766553 2678889999999988875 44 3567777764431 134689999
Q ss_pred Eecccccccc--------cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 297 HCSRCRVDWH--------ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 297 ~~s~~l~h~~--------~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
++.--...-. .+...++..+.++|+|||.++...-
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9873221111 1233456678899999999998653
No 153
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.19 E-value=5.6e-06 Score=86.02 Aligned_cols=100 Identities=14% Similarity=0.090 Sum_probs=70.9
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---------CCcEEEEecCCC-CCCCCCCeeEEEe
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---------IGAMISALSTKQ-LPYPSSSFEMVHC 298 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---------~~~~~~~~d~~~-Lpf~d~sFDlV~~ 298 (617)
+.+||+||||+|.++..+++... ...++.+|+++.+++.|++.. ..+.+...|... +...+++||+|++
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 34799999999999988887642 336888899999999988752 234555555422 1222568999997
Q ss_pred ccccccccc--c--hHHHHHHHHHhccCCeEEEEEe
Q 039518 299 SRCRVDWHA--N--DGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 299 s~~l~h~~~--d--~~~~L~el~RvLrPGG~Liis~ 330 (617)
... .+... + ..++++.+.+.|+|||.+++..
T Consensus 152 D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 542 22221 1 3578899999999999999864
No 154
>PLN02672 methionine S-methyltransferase
Probab=98.17 E-value=1.1e-05 Score=97.37 Aligned_cols=122 Identities=10% Similarity=0.027 Sum_probs=84.2
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC----C-----------------CcEEEEecCCCCC
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG----I-----------------GAMISALSTKQLP 287 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg----~-----------------~~~~~~~d~~~Lp 287 (617)
+.+|||+|||+|.++..+++..... .++++|+++.+++.|+++. . ++.+..+|.....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~-~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPS-KVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 4579999999999999998875432 7889999999999987652 1 3567777764322
Q ss_pred CC-CCCeeEEEeccccccc-------------------------c--------cc----hHHHHHHHHHhccCCeEEEEE
Q 039518 288 YP-SSSFEMVHCSRCRVDW-------------------------H--------AN----DGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 288 f~-d~sFDlV~~s~~l~h~-------------------------~--------~d----~~~~L~el~RvLrPGG~Liis 329 (617)
-. ...||+|+|+--.+.- . +| ...++.++.++|+|||.+++.
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 11 2369999997321110 0 01 145788889999999999996
Q ss_pred eCCCCCCCCCChhhHHHHH-HHHHHcCceEEE
Q 039518 330 APPAYRKDKDYPLIWDKLV-NLTTAMCWKLIA 360 (617)
Q Consensus 330 ~p~~~~~~~~~~~~W~~le-~La~~~gw~~v~ 360 (617)
.-. .. -+.+. +++++.||+.+.
T Consensus 278 iG~------~q---~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 278 MGG------RP---GQAVCERLFERRGFRITK 300 (1082)
T ss_pred ECc------cH---HHHHHHHHHHHCCCCeeE
Confidence 521 11 23476 588889988754
No 155
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.17 E-value=1.1e-05 Score=81.52 Aligned_cols=100 Identities=18% Similarity=0.236 Sum_probs=66.9
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC---CcEEEE-------------------------
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI---GAMISA------------------------- 280 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~---~~~~~~------------------------- 280 (617)
+..+|||||..|.++..+++..- .-.+-++||++..++.|++... .....+
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 44599999999999999988622 2257788999999999987611 000000
Q ss_pred ----------------ecCC-CCCCCCCCeeEEEecccc----ccccc-chHHHHHHHHHhccCCeEEEEE
Q 039518 281 ----------------LSTK-QLPYPSSSFEMVHCSRCR----VDWHA-NDGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 281 ----------------~d~~-~Lpf~d~sFDlV~~s~~l----~h~~~-d~~~~L~el~RvLrPGG~Liis 329 (617)
.+.. -|.+....||+|+|-... +.|.+ -...+++.+.++|.|||+|++.
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0000 011234579999985322 22332 2467999999999999999993
No 156
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.17 E-value=1.2e-05 Score=83.50 Aligned_cols=103 Identities=13% Similarity=0.222 Sum_probs=75.5
Q ss_pred CCeEEEECCCCc----HHHHHhccCCC----cEEEeeecCCcHHHHHHHHHh---------CCC----------------
Q 039518 229 VFQVLDVGCGVA----SFSAFLLPLDI----QTMSFAPKDGHENQIQFALER---------GIG---------------- 275 (617)
Q Consensus 229 g~rVLDIGCGtG----~~a~~La~~gv----~~v~v~~iDis~~~lq~A~er---------g~~---------------- 275 (617)
.-+|.-.||+|| +++..|.+... ..+.|.+.|++...++.|+.- +++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 457999999999 66666666543 256999999999999999742 111
Q ss_pred ---------cEEEEecCCCCCCCCCCeeEEEecccccccccc-hHHHHHHHHHhccCCeEEEEEeC
Q 039518 276 ---------AMISALSTKQLPYPSSSFEMVHCSRCRVDWHAN-DGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 276 ---------~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d-~~~~L~el~RvLrPGG~Liis~p 331 (617)
+.+...|+..-++..+.||+|+|-++++.+... ..+++..++..|+|||+|++...
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 222333332223245669999999999988733 46799999999999999999643
No 157
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.17 E-value=4.8e-06 Score=84.55 Aligned_cols=97 Identities=20% Similarity=0.313 Sum_probs=75.8
Q ss_pred EEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHH----HhCC-CcEEEEecCCCC-C--CCCCCeeEEEeccccc
Q 039518 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFAL----ERGI-GAMISALSTKQL-P--YPSSSFEMVHCSRCRV 303 (617)
Q Consensus 232 VLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~----erg~-~~~~~~~d~~~L-p--f~d~sFDlV~~s~~l~ 303 (617)
+||||||.|.+...+|++++.. .+.|+|+....+..|. +.++ ++.+...|+..+ + +++++.|-|+.++ --
T Consensus 52 ~lEIGfG~G~~l~~~A~~nP~~-nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F-PD 129 (227)
T COG0220 52 VLEIGFGMGEFLVEMAKKNPEK-NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF-PD 129 (227)
T ss_pred EEEECCCCCHHHHHHHHHCCCC-CEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC-CC
Confidence 9999999999999999998765 6777787777665554 4588 888888886443 2 3566999999765 34
Q ss_pred ccccch--------HHHHHHHHHhccCCeEEEEEe
Q 039518 304 DWHAND--------GILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 304 h~~~d~--------~~~L~el~RvLrPGG~Liis~ 330 (617)
+|+... ..+++.+.++|+|||.|.+.+
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 565322 468999999999999999987
No 158
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.10 E-value=1.5e-05 Score=84.72 Aligned_cols=97 Identities=18% Similarity=0.185 Sum_probs=69.9
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCC-CCCCeeEEEecccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPY-PSSSFEMVHCSRCR 302 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf-~d~sFDlV~~s~~l 302 (617)
+.+|||+|||+|.++..+++.+. .+.++|+++.+++.|+++ ++ ++.+..+|+.++.. ..+.||+|++.--.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr 250 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPR 250 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCC
Confidence 45799999999999999998764 678889999999988765 44 47788888766532 34579999976321
Q ss_pred cccccchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 303 VDWHANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 303 ~h~~~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
. .....+.++..-++|++.++++..+
T Consensus 251 ---~-G~~~~~~~~l~~~~~~~ivyvsc~p 276 (315)
T PRK03522 251 ---R-GIGKELCDYLSQMAPRFILYSSCNA 276 (315)
T ss_pred ---C-CccHHHHHHHHHcCCCeEEEEECCc
Confidence 1 1122333444457899999988754
No 159
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.09 E-value=2.8e-05 Score=86.04 Aligned_cols=97 Identities=20% Similarity=0.222 Sum_probs=69.7
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCC----CCCCCCCeeEEE
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQ----LPYPSSSFEMVH 297 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~----Lpf~d~sFDlV~ 297 (617)
.++.+|||+|||+|.++..|++... .+.++|+++.+++.|+++ ++ ++.+..+|+.+ +++.+++||+|+
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 4556799999999999999987643 577889999999988875 33 46778887644 234456799999
Q ss_pred ecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 298 CSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 298 ~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
..-.... -...++..+.+ |+|++.++++.
T Consensus 368 ~dPPr~G---~~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 368 LDPPRKG---CAAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred ECcCCCC---CCHHHHHHHHh-cCCCEEEEEcC
Confidence 6532111 12455665554 89999888875
No 160
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.09 E-value=2.7e-05 Score=67.80 Aligned_cols=96 Identities=28% Similarity=0.370 Sum_probs=69.4
Q ss_pred EEEECCCCcHHH--HHhccCCCcEEEeeecCCcHHHHHHHHHhCC--C---cEEEEecCCC--CCCCC-CCeeEEEeccc
Q 039518 232 VLDVGCGVASFS--AFLLPLDIQTMSFAPKDGHENQIQFALERGI--G---AMISALSTKQ--LPYPS-SSFEMVHCSRC 301 (617)
Q Consensus 232 VLDIGCGtG~~a--~~La~~gv~~v~v~~iDis~~~lq~A~erg~--~---~~~~~~d~~~--Lpf~d-~sFDlV~~s~~ 301 (617)
+||+|||+|... ..+...+ ..+.++|++..++..+..... . +.+...+... +++.+ ..||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRG---AYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCC---ceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 999999999854 3333222 244558999988887554431 1 3566666654 78777 489999 6666
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
..++.. ....+.++.++|+|+|.+++....
T Consensus 128 ~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLLP-PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcCC-HHHHHHHHHHhcCCCcEEEEEecc
Confidence 666654 788999999999999999998753
No 161
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.09 E-value=5e-06 Score=82.06 Aligned_cols=157 Identities=13% Similarity=0.187 Sum_probs=100.2
Q ss_pred cceecCCCCCcccCChhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHH
Q 039518 191 QLWWFPGGGTHFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFAL 270 (617)
Q Consensus 191 d~~~Fpgggt~F~~~a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~ 270 (617)
+.--|-|.|.+|--..+++.. ++...... -.+...++||+|+|.|.++..++... -.+.+.+.|..|....+
T Consensus 80 dING~lgrGsMFifSe~QF~k----lL~i~~p~-w~~~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~ 151 (288)
T KOG3987|consen 80 DINGFLGRGSMFIFSEEQFRK----LLVIGGPA-WGQEPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLK 151 (288)
T ss_pred ccccccccCceEEecHHHHHH----HHhcCCCc-cCCCCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHh
Confidence 333466788888666665543 33222111 11234579999999999999987653 25677899999988888
Q ss_pred HhCCCcEEEEecCCCCCCCCCCeeEEEecccccccccchHHHHHHHHHhccC-CeEEEEEe--CC---------CCCCCC
Q 039518 271 ERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRP-NGYFVYSA--PP---------AYRKDK 338 (617)
Q Consensus 271 erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrP-GG~Liis~--p~---------~~~~~~ 338 (617)
+++.++.-.. +..-.+-.||+|.|.+.+... .++..+|++++.+|+| +|..+++. |- ..+..|
T Consensus 152 kk~ynVl~~~----ew~~t~~k~dli~clNlLDRc-~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rP 226 (288)
T KOG3987|consen 152 KKNYNVLTEI----EWLQTDVKLDLILCLNLLDRC-FDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRP 226 (288)
T ss_pred hcCCceeeeh----hhhhcCceeehHHHHHHHHhh-cChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCc
Confidence 7776543221 111123469999998765544 3799999999999999 88887762 21 111112
Q ss_pred C-----ChhhHHH----HHHHHHHcCceEEE
Q 039518 339 D-----YPLIWDK----LVNLTTAMCWKLIA 360 (617)
Q Consensus 339 ~-----~~~~W~~----le~La~~~gw~~v~ 360 (617)
+ .++.|++ +.+++++.||.+.+
T Consensus 227 dn~Le~~Gr~~ee~v~~~~e~lr~~g~~vea 257 (288)
T KOG3987|consen 227 DNLLENNGRSFEEEVARFMELLRNCGYRVEA 257 (288)
T ss_pred hHHHHhcCccHHHHHHHHHHHHHhcCchhhh
Confidence 1 1233443 66678888887665
No 162
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.06 E-value=6.5e-05 Score=80.05 Aligned_cols=98 Identities=16% Similarity=0.303 Sum_probs=65.6
Q ss_pred ChhHHHHHHHhhhhhcc-CCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh---C--CC--c
Q 039518 205 GAPEYIQRLGNMMTNET-GNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER---G--IG--A 276 (617)
Q Consensus 205 ~a~~Y~~~L~~~L~~~~-~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er---g--~~--~ 276 (617)
++..|+..+.+++.... +.+....+.+|||||||+|.+...|+.+.. ...++++|+++.+++.|+++ . +. +
T Consensus 90 ~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 90 GRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred cHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 46789988888875422 233334567899999999988888876533 23788999999999999865 2 22 3
Q ss_pred EEEE-ecCCCC----CCCCCCeeEEEeccccc
Q 039518 277 MISA-LSTKQL----PYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 277 ~~~~-~d~~~L----pf~d~sFDlV~~s~~l~ 303 (617)
.+.. .+...+ ..+.+.||+|+|+--++
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~ 200 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNPPFH 200 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCCCCc
Confidence 3322 122221 12466899999985443
No 163
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.05 E-value=3.5e-05 Score=76.05 Aligned_cols=149 Identities=15% Similarity=0.219 Sum_probs=94.5
Q ss_pred hhHHHHHHHHHHhcc-CCCCCeeeEEeccccccchhhhccC--CCeEEEEeccCCCC-chh----HHHHhhcc--ccccc
Q 039518 448 SFWQDQVRHYWQLMN-VNETEIRNAMDMNAYCGGFAVALNS--LPVWVMNIVPISMK-NTL----SAIYNRGI--LGAFH 517 (617)
Q Consensus 448 ~~w~~~v~~y~~~~~-~~~~~~Rn~mDm~~~~g~faa~l~~--~~v~vmnv~p~~~~-~~l----~~~~~RGl--ig~~~ 517 (617)
+.|++++-.=..+.+ +..+ ..|+|+|||.|.++.++.. ...=| +-.|.. ..+ +.+-+.|+ +-+++
T Consensus 27 ~~~~~~~~d~l~l~~~l~~g--~~VLDiGcGtG~~al~la~~~~~~~V---~giD~s~~~l~~A~~~~~~~~l~~i~~~~ 101 (187)
T PRK00107 27 ELWERHILDSLAIAPYLPGG--ERVLDVGSGAGFPGIPLAIARPELKV---TLVDSLGKKIAFLREVAAELGLKNVTVVH 101 (187)
T ss_pred HHHHHHHHHHHHHHhhcCCC--CeEEEEcCCCCHHHHHHHHHCCCCeE---EEEeCcHHHHHHHHHHHHHcCCCCEEEEe
Confidence 378877733222222 4443 5799999999988776642 22223 333333 222 22334454 33344
Q ss_pred ccCCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecChHHHHHHHhhhhcCCceEEEe--e
Q 039518 518 DWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELH--S 595 (617)
Q Consensus 518 ~~~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~--~ 595 (617)
.-.+.+.. ..+||+|-+..+ ..+++++-++-|+|||||.+++-+.......+.++++.+-|.+..+ -
T Consensus 102 ~d~~~~~~-~~~fDlV~~~~~----------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 170 (187)
T PRK00107 102 GRAEEFGQ-EEKFDVVTSRAV----------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIEL 170 (187)
T ss_pred ccHhhCCC-CCCccEEEEccc----------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEE
Confidence 43444443 568999986431 2457889999999999999999988888999999999999986443 2
Q ss_pred ccccCCCceeEEEEEec
Q 039518 596 LENREKKMESVLICRKK 612 (617)
Q Consensus 596 ~e~~~~~~~~~l~~~k~ 612 (617)
+-+|-+++..+.|.+|+
T Consensus 171 ~~~~~~~~~~~~~~~~~ 187 (187)
T PRK00107 171 TLPGLDGERHLVIIRKK 187 (187)
T ss_pred ecCCCCCcEEEEEEecC
Confidence 22344444566777764
No 164
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.05 E-value=3.1e-05 Score=78.77 Aligned_cols=91 Identities=20% Similarity=0.189 Sum_probs=62.1
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcE-EEEecCCCCC-----CCCCCeeEEEeccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAM-ISALSTKQLP-----YPSSSFEMVHCSRC 301 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~-~~~~d~~~Lp-----f~d~sFDlV~~s~~ 301 (617)
.+.+|||+|||+|.|+..+++++.. .++++|++..|+....+....+. +...++..+. ..-..||+++++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~--~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~ 152 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAK--EVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI 152 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCC--EEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH
Confidence 4567999999999999999998753 68889999988876544444332 3333443322 11236777776532
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
..|..+.++|+| |.+++-.
T Consensus 153 ---------~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 153 ---------SILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred ---------hHHHHHHHHhCc-CeEEEEc
Confidence 248889999999 7766543
No 165
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.02 E-value=2.2e-06 Score=80.16 Aligned_cols=110 Identities=17% Similarity=0.337 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhcccccccccCCCCCCC
Q 039518 448 SFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGILGAFHDWCEPFSTY 526 (617)
Q Consensus 448 ~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGlig~~~~~~~~f~ty 526 (617)
+.|.+.+..+... ...-.+|||+|||.|.|+..|.+.+. +++-.|.. ..+.. +-.....++-.++.. -
T Consensus 7 ~~~~~~~~~~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~~~~~~~-~ 75 (161)
T PF13489_consen 7 RAYADLLERLLPR----LKPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFDAQDPPF-P 75 (161)
T ss_dssp HCHHHHHHHHHTC----TTTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEECHTHHC-H
T ss_pred HHHHHHHHHHhcc----cCCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhhhhhhhc-c
Confidence 3445555444431 23346999999999999999988766 34444444 22222 222222221111111 2
Q ss_pred CCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh
Q 039518 527 PRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK 574 (617)
Q Consensus 527 prtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~ 574 (617)
+++||+|.+..+|.+. . +...+|-+|=|+|+|||++++.+..
T Consensus 76 ~~~fD~i~~~~~l~~~---~---d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 76 DGSFDLIICNDVLEHL---P---DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp SSSEEEEEEESSGGGS---S---HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred ccchhhHhhHHHHhhc---c---cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 4899999999999975 3 4789999999999999999998654
No 166
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.01 E-value=3e-05 Score=77.27 Aligned_cols=98 Identities=10% Similarity=0.043 Sum_probs=67.9
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCC-CCCCCCCeeEEEecccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQ-LPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~-Lpf~d~sFDlV~~s~~l 302 (617)
+.+|||+|||+|.++..++.++. ..++++|.++.+++.++++ +. ++.+...|+.. ++...++||+|++.--
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP- 130 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP- 130 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC-
Confidence 45799999999999987666654 2788889999999888765 33 46677777543 3223457999998742
Q ss_pred cccccc-hHHHHHHHHH--hccCCeEEEEEeC
Q 039518 303 VDWHAN-DGILLKEVDR--VLRPNGYFVYSAP 331 (617)
Q Consensus 303 ~h~~~d-~~~~L~el~R--vLrPGG~Liis~p 331 (617)
+... ...++..+.. +|+|+|.+++..+
T Consensus 131 --y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 131 --FRKGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred --CCCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 2222 3344555544 3799999999865
No 167
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.01 E-value=1.3e-05 Score=80.69 Aligned_cols=134 Identities=13% Similarity=0.156 Sum_probs=90.1
Q ss_pred CcccCCCCeEEEECCCCcHHHHHhccCCC-cEEEeeecCCcHHHHHHHHHh-------CCCcEEEEecCCCC--CCCCCC
Q 039518 223 NLRSAGVFQVLDVGCGVASFSAFLLPLDI-QTMSFAPKDGHENQIQFALER-------GIGAMISALSTKQL--PYPSSS 292 (617)
Q Consensus 223 ~lr~~~g~rVLDIGCGtG~~a~~La~~gv-~~v~v~~iDis~~~lq~A~er-------g~~~~~~~~d~~~L--pf~d~s 292 (617)
.++...|.+|||...|-|.++...+++|. .++++ +.+++.++.|.-+ ...+.+..+|+.++ .|+|.+
T Consensus 129 ~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~Vitv---Ekdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~s 205 (287)
T COG2521 129 LVKVKRGERVLDTCTGLGYTAIEALERGAIHVITV---EKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDES 205 (287)
T ss_pred eeccccCCEeeeeccCccHHHHHHHHcCCcEEEEE---eeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccc
Confidence 45556788999999999999999999987 44444 5566777777644 12356777776444 377999
Q ss_pred eeEEEecccccccc--cchHHHHHHHHHhccCCeEEEEEe--CCCCCCCCCChhhHHHHHHHHHHcCceEEEEe
Q 039518 293 FEMVHCSRCRVDWH--ANDGILLKEVDRVLRPNGYFVYSA--PPAYRKDKDYPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 293 FDlV~~s~~l~h~~--~d~~~~L~el~RvLrPGG~Liis~--p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~ 362 (617)
||+|+----.+... -.-.++.+|++|+|||||.++--+ |...+...+- ...+.+.+++.||.++...
T Consensus 206 fDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~---~~gVa~RLr~vGF~~v~~~ 276 (287)
T COG2521 206 FDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDL---PKGVAERLRRVGFEVVKKV 276 (287)
T ss_pred cceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCCh---hHHHHHHHHhcCceeeeee
Confidence 99997321111111 113568999999999999988654 2222222222 3457778899999977643
No 168
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.00 E-value=3.8e-05 Score=81.81 Aligned_cols=120 Identities=21% Similarity=0.225 Sum_probs=86.5
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC-cEEEE-ecCCCCCCCCCCeeEEEec
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG-AMISA-LSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~-~~~~~-~d~~~Lpf~d~sFDlV~~s 299 (617)
..+|..|||-=||||++.....-.|. .+.+.|++..|++-|+.+ ++. ..+.. .|+..+|+++++||.|++-
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~G~---~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatD 271 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLMGA---RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATD 271 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhcCc---eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEec
Confidence 45677899999999999887765565 566789999999998876 332 32344 4999999999999999973
Q ss_pred ccc-----cccc---cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 300 RCR-----VDWH---ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 300 ~~l-----~h~~---~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
--. ..-. +-...+|..+.++|++||++++..|- .. + ..+...+|+++..
T Consensus 272 PPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~-------~~--~----~~~~~~~f~v~~~ 328 (347)
T COG1041 272 PPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR-------DP--R----HELEELGFKVLGR 328 (347)
T ss_pred CCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC-------cc--h----hhHhhcCceEEEE
Confidence 100 0100 11356899999999999999998871 11 2 2256678988864
No 169
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.00 E-value=2.4e-05 Score=75.18 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=85.4
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC-----CCCCCeeEEEecccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP-----YPSSSFEMVHCSRCR 302 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp-----f~d~sFDlV~~s~~l 302 (617)
.|.-|||+|.|||.++..++++++.-.+++.++.+.+.+....++...+.+..+|+..+. +.+..||.|+|..-+
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPl 127 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPL 127 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecccc
Confidence 344599999999999999999998888899999999999988888777778888876664 456789999998666
Q ss_pred cccccc-hHHHHHHHHHhccCCeEEEEEe
Q 039518 303 VDWHAN-DGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 303 ~h~~~d-~~~~L~el~RvLrPGG~Liis~ 330 (617)
..++.. .-+.|+++...|++||.++...
T Consensus 128 l~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 128 LNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred ccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 666522 3568999999999999998765
No 170
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.96 E-value=2e-05 Score=79.45 Aligned_cols=99 Identities=18% Similarity=0.232 Sum_probs=73.4
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEE-ecC-CCCC-CCCCCeeEEEe
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMISA-LST-KQLP-YPSSSFEMVHC 298 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~-~d~-~~Lp-f~d~sFDlV~~ 298 (617)
+.++|||||.+.|..+..|+..-..-..++.+|.++++.+.|+++ |+. +.+.. +|. +.+. ...++||+|+.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 445699999999999999987633122688889999999999886 443 34444 343 2222 45689999983
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
-+...+...++..+.++|||||.+++..
T Consensus 139 ----DadK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 139 ----DADKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred ----eCChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 3445566789999999999999999864
No 171
>PLN02476 O-methyltransferase
Probab=97.93 E-value=1.7e-05 Score=82.84 Aligned_cols=98 Identities=12% Similarity=0.102 Sum_probs=70.4
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCC-CC-C----CCCCeeEE
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQ-LP-Y----PSSSFEMV 296 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~-Lp-f----~d~sFDlV 296 (617)
.++|||||+|+|..+..++..-.....++.+|.++...+.|++. |. .+.+..+++.+ |+ + .+++||+|
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 45699999999999999986411112467779999998888765 54 36777776522 22 1 13689999
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+.- ....+...++..+.++|+|||.+++..
T Consensus 199 FID----a~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 199 FVD----ADKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EEC----CCHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 843 233456778999999999999998853
No 172
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.90 E-value=4e-05 Score=74.51 Aligned_cols=102 Identities=20% Similarity=0.226 Sum_probs=62.3
Q ss_pred CCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----C----CCcEEEEecCCC-C--C-CCCCCe
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----G----IGAMISALSTKQ-L--P-YPSSSF 293 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g----~~~~~~~~d~~~-L--p-f~d~sF 293 (617)
..+.+|||+|||+|..+..++.. +.. .+...|.++ .++..+.+ + ..+.+...+=.+ . . ...++|
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~--~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAA--RVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-S--EEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred cCCceEEEECCccchhHHHHHhccCCc--eEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 45678999999999999998887 332 455567776 55554433 2 223444433111 1 1 234689
Q ss_pred eEEEecccccccccchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 294 EMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 294 DlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
|+|+++.++.. .+....++.-+.++|+|+|.++++.+.
T Consensus 121 D~IlasDv~Y~-~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 121 DVILASDVLYD-EELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp SEEEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred CEEEEecccch-HHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 99999997765 456788999999999999998887753
No 173
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.88 E-value=2.2e-05 Score=81.75 Aligned_cols=71 Identities=13% Similarity=0.012 Sum_probs=57.4
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC--CCcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG--IGAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg--~~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||||||+|.++..|++++. .++++|+++.+++.++++. .++.+..+|+..+++++-.+|.|+++.
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVANL 113 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEeC
Confidence 4556799999999999999999864 6788899999999998764 467888899888876543358888763
No 174
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.86 E-value=0.00014 Score=72.80 Aligned_cols=120 Identities=16% Similarity=0.226 Sum_probs=80.7
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCC---CCCeeEEEecccccccc
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYP---SSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~---d~sFDlV~~s~~l~h~~ 306 (617)
.++|||||=+...... . ....+++.+|+++.- ..+...|+...|.| ++.||+|+||.++...+
T Consensus 53 lrlLEVGals~~N~~s--~--~~~fdvt~IDLns~~----------~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP 118 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--T--SGWFDVTRIDLNSQH----------PGILQQDFMERPLPKNESEKFDVISLSLVLNFVP 118 (219)
T ss_pred ceEEeecccCCCCccc--c--cCceeeEEeecCCCC----------CCceeeccccCCCCCCcccceeEEEEEEEEeeCC
Confidence 6899999875543221 1 123468888987622 33556677666653 67899999998665444
Q ss_pred --cchHHHHHHHHHhccCCeE-----EEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEeee
Q 039518 307 --ANDGILLKEVDRVLRPNGY-----FVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQ 364 (617)
Q Consensus 307 --~d~~~~L~el~RvLrPGG~-----Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~~~ 364 (617)
....+++..+.+.|+|+|. |+|+.|..--.+..+- .-+.+..+.+.+||..+..+..
T Consensus 119 ~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~-~~~~l~~im~~LGf~~~~~~~~ 182 (219)
T PF11968_consen 119 DPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYM-TEERLREIMESLGFTRVKYKKS 182 (219)
T ss_pred CHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhccccc-CHHHHHHHHHhCCcEEEEEEec
Confidence 2346799999999999999 9998873321111111 1245888999999999986543
No 175
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.84 E-value=4.3e-05 Score=78.91 Aligned_cols=70 Identities=14% Similarity=0.082 Sum_probs=56.9
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---IGAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
.++.+|||||||+|.++..|++++. .++++|+++.+++.++++. .++.+..+|+..++++ .||.|+++..
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv~NlP 100 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVVSNLP 100 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceEEEEcCC
Confidence 3456799999999999999998854 6788899999999998763 3477888898887765 4899998753
No 176
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.83 E-value=4e-05 Score=76.73 Aligned_cols=97 Identities=16% Similarity=0.173 Sum_probs=70.6
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCC-CC-----CCCCCeeEEE
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQ-LP-----YPSSSFEMVH 297 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~-Lp-----f~d~sFDlV~ 297 (617)
.+|||||+++|.-+..|++.-.....++.+|+++...+.|++. |. .+.+..+++.+ ++ .+.++||+|+
T Consensus 47 k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VF 126 (205)
T PF01596_consen 47 KRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVF 126 (205)
T ss_dssp SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEE
T ss_pred ceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEE
Confidence 3599999999999999997522223677779999999988764 43 46777776532 22 1246899998
Q ss_pred ecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 298 CSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 298 ~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.- +...+...++..+.++|+|||.+++..
T Consensus 127 iD----a~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 127 ID----ADKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EE----STGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred Ec----ccccchhhHHHHHhhhccCCeEEEEcc
Confidence 43 334456778999999999999999964
No 177
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.83 E-value=3.2e-05 Score=82.12 Aligned_cols=102 Identities=15% Similarity=0.182 Sum_probs=66.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCc-EEEeeecCCcHHHHHHHHHhCCC--cEEEEecCCCCCCCCCCeeEEEecccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQ-TMSFAPKDGHENQIQFALERGIG--AMISALSTKQLPYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~-~v~v~~iDis~~~lq~A~erg~~--~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h 304 (617)
.++.|||||||+|.++..-++.|.. ++.+...++..-..+.++.++.. +.+..+.++++.+|....|+|++-....-
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~ 139 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYF 139 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHH
Confidence 4567999999999999999988743 23343334444444455556654 45556667777667788999997432111
Q ss_pred cc-c-chHHHHHHHHHhccCCeEEEEE
Q 039518 305 WH-A-NDGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 305 ~~-~-d~~~~L~el~RvLrPGG~Liis 329 (617)
.. + -....|..=.+.|+|||.++=+
T Consensus 140 Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 140 LLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred HHHhhhhhhhhhhhhhccCCCceEccc
Confidence 11 1 2355677778999999987643
No 178
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.83 E-value=0.00011 Score=83.13 Aligned_cols=101 Identities=17% Similarity=0.200 Sum_probs=73.6
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCC--CCCCCCeeEEEecc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQL--PYPSSSFEMVHCSR 300 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~L--pf~d~sFDlV~~s~ 300 (617)
.+..+||||||.|.+...+|...+.. .+.++|++...+..|.++ ++ ++.+...++..+ -++++++|.|+.++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~-~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDA-LFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCC-CEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 34559999999999999999987654 667778888776655443 44 344554454322 26789999999764
Q ss_pred cccccccch--------HHHHHHHHHhccCCeEEEEEe
Q 039518 301 CRVDWHAND--------GILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 301 ~l~h~~~d~--------~~~L~el~RvLrPGG~Liis~ 330 (617)
--+|+... ..++..+.++|+|||.+.+.+
T Consensus 426 -PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 426 -PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred -CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 34555221 568999999999999999976
No 179
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.82 E-value=1.1e-05 Score=84.16 Aligned_cols=111 Identities=13% Similarity=0.275 Sum_probs=71.2
Q ss_pred HHHHHHHhccCCCCCeeeEEeccccccchhhhccCC-CeEEEEeccCCCCchhHH----HHhhcccccccccCCCCCCCC
Q 039518 453 QVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMKNTLSA----IYNRGILGAFHDWCEPFSTYP 527 (617)
Q Consensus 453 ~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~~~l~~----~~~RGlig~~~~~~~~f~typ 527 (617)
.++.+.+.++|++|. +|||+|||.||++-++.++ .+-|..|-- +++|+.. |-++||-....--+.-|...|
T Consensus 50 k~~~~~~~~~l~~G~--~vLDiGcGwG~~~~~~a~~~g~~v~gitl--S~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~ 125 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGD--RVLDIGCGWGGLAIYAAERYGCHVTGITL--SEEQAEYARERIREAGLEDRVEVRLQDYRDLP 125 (273)
T ss_dssp HHHHHHTTTT--TT---EEEEES-TTSHHHHHHHHHH--EEEEEES---HHHHHHHHHHHHCSTSSSTEEEEES-GGG--
T ss_pred HHHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCcEEEEEEC--CHHHHHHHHHHHHhcCCCCceEEEEeeccccC
Confidence 345566667788884 9999999999999999877 654443332 2355554 457787554443334444445
Q ss_pred CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 528 RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 528 rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
-+||-|=+-+.|.+. .+=....++-+++|+|+|||.+++.
T Consensus 126 ~~fD~IvSi~~~Ehv----g~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 126 GKFDRIVSIEMFEHV----GRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp -S-SEEEEESEGGGT----CGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred CCCCEEEEEechhhc----ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 599998888888864 3345668899999999999999985
No 180
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.82 E-value=0.00017 Score=74.20 Aligned_cols=121 Identities=16% Similarity=0.186 Sum_probs=78.8
Q ss_pred hhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEE
Q 039518 206 APEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMIS 279 (617)
Q Consensus 206 a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~ 279 (617)
.+++.+.+.+.+..... ..+..+||+|||+|.++..++..-. -..++++|.|++++..|.++ ++. +.+.
T Consensus 130 TEE~V~~Vid~~~~~~~----~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~ 204 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEH----SKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI 204 (328)
T ss_pred HHHHHHHHHHHHhhhhh----cccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEE
Confidence 34666666666643221 1223599999999999999887533 33788899999999998876 222 2222
Q ss_pred Ee----c-CCCCCCCCCCeeEEEeccccccccc-------------------------chHHHHHHHHHhccCCeEEEEE
Q 039518 280 AL----S-TKQLPYPSSSFEMVHCSRCRVDWHA-------------------------NDGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 280 ~~----d-~~~Lpf~d~sFDlV~~s~~l~h~~~-------------------------d~~~~L~el~RvLrPGG~Liis 329 (617)
.. + ....+...+.+|+++|+--.+.-.+ ....++.-+.|.|+|||.+.+.
T Consensus 205 ~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 205 HNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred ecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 22 1 2334456789999999832221110 0123467788999999999997
Q ss_pred eC
Q 039518 330 AP 331 (617)
Q Consensus 330 ~p 331 (617)
..
T Consensus 285 ~~ 286 (328)
T KOG2904|consen 285 LV 286 (328)
T ss_pred ec
Confidence 64
No 181
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=4.8e-05 Score=75.58 Aligned_cols=98 Identities=13% Similarity=0.144 Sum_probs=71.1
Q ss_pred cCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhC---------------CCcEEEEecCCCCCCC
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERG---------------IGAMISALSTKQLPYP 289 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg---------------~~~~~~~~d~~~Lpf~ 289 (617)
++||.+.||+|.|+|.++..++.. +.......++|..++.++.++++- ....+.++|....--+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 356778999999999988877643 333333468898999998887651 1245677787666666
Q ss_pred CCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 290 SSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 290 d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
...||.||+.. ...+..+++...|+|||.+++-.
T Consensus 160 ~a~YDaIhvGA-------aa~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 160 QAPYDAIHVGA-------AASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred cCCcceEEEcc-------CccccHHHHHHhhccCCeEEEee
Confidence 78899999873 23345677778899999999843
No 182
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.78 E-value=0.0001 Score=80.32 Aligned_cols=96 Identities=21% Similarity=0.222 Sum_probs=68.5
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCC-CCCCCeeEEEecccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLP-YPSSSFEMVHCSRCR 302 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lp-f~d~sFDlV~~s~~l 302 (617)
+.+|||+|||+|.++..++..+. .+.++|+++.+++.|+++ +. ++.+..+|+.++. ...++||+|+..--.
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 35699999999999999997753 678889999999988865 33 4677777775432 122469999976422
Q ss_pred cccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 303 VDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 303 ~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
..-...++..+. .++|++.++++..
T Consensus 311 ---~G~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 311 ---RGIGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred ---CCCcHHHHHHHH-hcCCCeEEEEEeC
Confidence 111234555554 4799999999874
No 183
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.78 E-value=7.5e-05 Score=83.06 Aligned_cols=119 Identities=17% Similarity=0.240 Sum_probs=73.0
Q ss_pred hHHHHHHHhhhhhccCCc-ccCCCCeEEEECCCCcHHHHHhccCC---CcEEEeeecCCcHHHHHHH----HHhC--CCc
Q 039518 207 PEYIQRLGNMMTNETGNL-RSAGVFQVLDVGCGVASFSAFLLPLD---IQTMSFAPKDGHENQIQFA----LERG--IGA 276 (617)
Q Consensus 207 ~~Y~~~L~~~L~~~~~~l-r~~~g~rVLDIGCGtG~~a~~La~~g---v~~v~v~~iDis~~~lq~A----~erg--~~~ 276 (617)
..|.+.|...+......- ....+..|||||||+|.+....++.+ .....|.+++-++.++... .+++ ..+
T Consensus 164 ~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V 243 (448)
T PF05185_consen 164 DQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKV 243 (448)
T ss_dssp HHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTE
T ss_pred HHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeE
Confidence 355566666665432221 01134569999999999876665543 1244677777776655443 2333 458
Q ss_pred EEEEecCCCCCCCCCCeeEEEecccccccc--cchHHHHHHHHHhccCCeEEE
Q 039518 277 MISALSTKQLPYPSSSFEMVHCSRCRVDWH--ANDGILLKEVDRVLRPNGYFV 327 (617)
Q Consensus 277 ~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~--~d~~~~L~el~RvLrPGG~Li 327 (617)
++..+|++++..+. ..|+|+|= .+-.+. +-..+.|....|.|||||.++
T Consensus 244 ~vi~~d~r~v~lpe-kvDIIVSE-lLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 244 TVIHGDMREVELPE-KVDIIVSE-LLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEES-TTTSCHSS--EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEeCcccCCCCCC-ceeEEEEe-ccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 89999999987665 79999963 233333 223457899999999999776
No 184
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.76 E-value=0.00031 Score=74.77 Aligned_cols=96 Identities=19% Similarity=0.158 Sum_probs=72.6
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC-CCcEEEEecC-CCCCCCCCCeeEEEecccccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG-IGAMISALST-KQLPYPSSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg-~~~~~~~~d~-~~Lpf~d~sFDlV~~s~~l~h~~ 306 (617)
....+|+|.|.|..+..++.... .+.+++.....+-.+++.. ..+....+|. ++.| .+ |+|++-++++||.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P--~~--daI~mkWiLhdwt 250 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTP--KG--DAIWMKWILHDWT 250 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhcCCcceecccccccCC--Cc--CeEEEEeecccCC
Confidence 35699999999999999988543 3455566666665555543 4455555664 4444 44 6999999999999
Q ss_pred -cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 307 -ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 307 -~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
++-.++|++++..|+|||.+++.+.
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 4567899999999999999999875
No 185
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=97.75 E-value=4.4e-05 Score=79.00 Aligned_cols=111 Identities=13% Similarity=0.184 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCC--CeEEEEeccCCCC-chhHHHHhhc-------c--ccc
Q 039518 448 SFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMK-NTLSAIYNRG-------I--LGA 515 (617)
Q Consensus 448 ~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~-~~l~~~~~RG-------l--ig~ 515 (617)
..|++.+..+. ++..+ .+|||+|||.|.++..|.++ +-. +|+-.|-. +.|..+-+|. . |-.
T Consensus 59 ~~~r~~~~~~~---~~~~~--~~VLDlGcGtG~~~~~la~~~~~~~--~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~ 131 (261)
T PLN02233 59 RIWKRMAVSWS---GAKMG--DRVLDLCCGSGDLAFLLSEKVGSDG--KVMGLDFSSEQLAVAASRQELKAKSCYKNIEW 131 (261)
T ss_pred HHHHHHHHHHh---CCCCC--CEEEEECCcCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHhhhhhhccCCCeEE
Confidence 44665443322 24443 57999999999998877543 111 22333434 5566665442 1 112
Q ss_pred ccccCCCCCCCC-CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 516 FHDWCEPFSTYP-RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 516 ~~~~~~~f~typ-rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
.+.=.+.+| || .+||+|.+...+.++ . +...+|-||-|+|||||.+++.|
T Consensus 132 ~~~d~~~lp-~~~~sfD~V~~~~~l~~~---~---d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 132 IEGDATDLP-FDDCYFDAITMGYGLRNV---V---DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred EEcccccCC-CCCCCEeEEEEecccccC---C---CHHHHHHHHHHHcCcCcEEEEEE
Confidence 222234444 44 799999987777654 2 46789999999999999998875
No 186
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.74 E-value=5e-05 Score=82.20 Aligned_cols=101 Identities=21% Similarity=0.253 Sum_probs=80.0
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++..++|+|||.|....+++.... ..+.+++.++.++..+... ++ ...+...++...||+++.||.+.+..
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred cccccccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 4556799999999999988876532 2566778887777666543 22 23446678888899999999999998
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
++.|.. ++..+++|++|+++|||+++...
T Consensus 187 ~~~~~~-~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 187 VVCHAP-DLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred ecccCC-cHHHHHHHHhcccCCCceEEeHH
Confidence 888876 89999999999999999999853
No 187
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.73 E-value=5.5e-05 Score=74.04 Aligned_cols=121 Identities=18% Similarity=0.211 Sum_probs=77.5
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcE--------EEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCC
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQT--------MSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSS 292 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~--------v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~s 292 (617)
+++..|||--||+|++....+..+... ..+.+.|+++.+++.|+++ +. .+.+...|+.++++.+++
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~ 106 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGS 106 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSB
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCC
Confidence 345679999999999987665442221 1367889999999988876 33 367788899999988889
Q ss_pred eeEEEeccccccccc---c----hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 293 FEMVHCSRCRVDWHA---N----DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 293 FDlV~~s~~l~h~~~---d----~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
+|.|+++--.-.-.. + ...+++++.|+|++...++++. ...+++.+...+|+...
T Consensus 107 ~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~-------------~~~~~~~~~~~~~~~~~ 168 (179)
T PF01170_consen 107 VDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTS-------------NRELEKALGLKGWRKRK 168 (179)
T ss_dssp SCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEES-------------CCCHHHHHTSTTSEEEE
T ss_pred CCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC-------------CHHHHHHhcchhhceEE
Confidence 999998732111111 1 1346899999999944444432 11266667777777665
No 188
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.73 E-value=4.9e-05 Score=77.56 Aligned_cols=96 Identities=15% Similarity=0.202 Sum_probs=62.4
Q ss_pred CCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhcc-ccc-ccccCCCCCCCCCccchhhcccccccc
Q 039518 466 TEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGI-LGA-FHDWCEPFSTYPRTYDLLHANHLFSHY 542 (617)
Q Consensus 466 ~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGl-ig~-~~~~~~~f~typrtyDl~H~~~~~s~~ 542 (617)
....+|||+|||.|.++..|..... .|.=.|-. ..+..+-+++- +.. ..|. +.++..+.+||+|-++..+. |
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~V~s~~~l~-~ 115 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDI-ESLPLATATFDLAWSNLAVQ-W 115 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCc-ccCcCCCCcEEEEEECchhh-h
Confidence 3456899999999999888865542 22222333 55555555542 111 1232 33443347999998765553 2
Q ss_pred ccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 543 KNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 543 ~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
. -+...+|-||-|+|+|||.+++.
T Consensus 116 ---~--~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 116 ---C--GNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred ---c--CCHHHHHHHHHHHcCCCeEEEEE
Confidence 1 14678999999999999999997
No 189
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.72 E-value=2.2e-05 Score=81.14 Aligned_cols=99 Identities=21% Similarity=0.187 Sum_probs=77.3
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccc--
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH-- 306 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~-- 306 (617)
+..+||+|||.|..+. . .+ ...+.+.|++...+..|+..+.. .....|+..+|+.+.+||.+++..++||+.
T Consensus 46 gsv~~d~gCGngky~~---~-~p-~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLG---V-NP-LCLIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cceeeecccCCcccCc---C-CC-cceeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 4459999999996431 1 12 22566789999988888876653 566788999999999999999998888887
Q ss_pred cchHHHHHHHHHhccCCeEEEEEeCCC
Q 039518 307 ANDGILLKEVDRVLRPNGYFVYSAPPA 333 (617)
Q Consensus 307 ~d~~~~L~el~RvLrPGG~Liis~p~~ 333 (617)
.....+++|+.|+|||||...+.....
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 335679999999999999988876433
No 190
>PLN02244 tocopherol O-methyltransferase
Probab=97.70 E-value=4.6e-05 Score=81.89 Aligned_cols=94 Identities=20% Similarity=0.261 Sum_probs=61.1
Q ss_pred CeeeEEeccccccchhhhccCC---CeEEEEeccCCCCchhHHH----Hhhcccc----cccccCC-CCCCCCCccchhh
Q 039518 467 EIRNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMKNTLSAI----YNRGILG----AFHDWCE-PFSTYPRTYDLLH 534 (617)
Q Consensus 467 ~~Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~~~l~~~----~~RGlig----~~~~~~~-~f~typrtyDl~H 534 (617)
.-.+|||+|||.|+++..|.++ .|..+.+.| +++..+ -++|+.. ...|..+ +|+ +.+||+|.
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~----~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~--~~~FD~V~ 191 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSP----VQAARANALAAAQGLSDKVSFQVADALNQPFE--DGQFDLVW 191 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCH----HHHHHHHHHHHhcCCCCceEEEEcCcccCCCC--CCCccEEE
Confidence 3467999999999999888653 344443322 333332 3345422 1123222 232 38999999
Q ss_pred ccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 535 ANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 535 ~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+...+.++ . +...+|-||-|+|||||.++|.+
T Consensus 192 s~~~~~h~---~---d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 192 SMESGEHM---P---DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred ECCchhcc---C---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 87776654 2 24578999999999999999853
No 191
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.68 E-value=0.0002 Score=73.60 Aligned_cols=68 Identities=13% Similarity=0.071 Sum_probs=54.0
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCCCCCCCCCCee---EEEec
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---IGAMISALSTKQLPYPSSSFE---MVHCS 299 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~~Lpf~d~sFD---lV~~s 299 (617)
.++.+|||||||+|.++..|++++. .+.++|+++.+++.++++. .++.+..+|+..++++ .|| +|+++
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsN 101 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSN 101 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEc
Confidence 3456799999999999999999875 4677899999999888763 3577888888888765 466 77765
No 192
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=97.67 E-value=0.00012 Score=73.52 Aligned_cols=111 Identities=17% Similarity=0.292 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCC---CeEEEEeccCCCCchhHHHHh----hcc--cccccc
Q 039518 448 SFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMKNTLSAIYN----RGI--LGAFHD 518 (617)
Q Consensus 448 ~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~~~l~~~~~----RGl--ig~~~~ 518 (617)
..|++.+-. .+.+..+ .+|||+|||.|.++..|.+. ..-|+.+-... +.+..+-+ .++ +-+++.
T Consensus 31 ~~~~~~~l~---~l~~~~~--~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~v~~~~~ 103 (231)
T TIGR02752 31 KKWRKDTMK---RMNVQAG--TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSE--NMLSVGRQKVKDAGLHNVELVHG 103 (231)
T ss_pred HHHHHHHHH---hcCCCCC--CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHhcCCCceEEEEe
Confidence 445544333 2335555 57999999999999888643 12333332221 33333222 233 122221
Q ss_pred cCCCCCCCC-CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 519 WCEPFSTYP-RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 519 ~~~~f~typ-rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
=.+.++ +| .+||+|++...+... . +...+|-|+-|+|+|||.+++.+
T Consensus 104 d~~~~~-~~~~~fD~V~~~~~l~~~---~---~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 104 NAMELP-FDDNSFDYVTIGFGLRNV---P---DYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred chhcCC-CCCCCccEEEEecccccC---C---CHHHHHHHHHHHcCcCeEEEEEE
Confidence 112222 34 799999987666533 1 24578899999999999999865
No 193
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.66 E-value=5.2e-05 Score=79.44 Aligned_cols=115 Identities=16% Similarity=0.236 Sum_probs=71.4
Q ss_pred eEEeccccccchhhhccCCCeEEEEeccCCCC-chhHH----HHhhccc--ccccccCCCCCCCCCccchhhcccccccc
Q 039518 470 NAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSA----IYNRGIL--GAFHDWCEPFSTYPRTYDLLHANHLFSHY 542 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~----~~~RGli--g~~~~~~~~f~typrtyDl~H~~~~~s~~ 542 (617)
+|||+|||.|.++.+|.+...= |.-.|.. .-+.. +-+.|+- -...|.-+ .. .+..||+|-+..+|..
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~~---V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~-~~-~~~~fD~I~~~~vl~~- 196 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGFD---VTAVDINQQSLENLQEIAEKENLNIRTGLYDINS-AS-IQEEYDFILSTVVLMF- 196 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHHcCCceEEEEechhc-cc-ccCCccEEEEcchhhh-
Confidence 7999999999999998776532 3333443 33332 3345651 11122211 11 2689999998887753
Q ss_pred ccCCCCCChhhHHhhhhhcccCCceEEEe---cCh-----------HHHHHHHhhhhcCCceEEEee
Q 039518 543 KNRGEVCSLEDIMLEMDLIIRPQGFIIIR---DEK-----------SLITRIRDLAPKFLWDVELHS 595 (617)
Q Consensus 543 ~~~~~~c~~~~~l~e~dRilRP~G~~i~~---d~~-----------~~~~~~~~~~~~~~W~~~~~~ 595 (617)
.++-.+..++-+|-|+|+|||++++- +.. -.-.+++++.+. |++....
T Consensus 197 ---l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~ 258 (287)
T PRK12335 197 ---LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYN 258 (287)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEe
Confidence 23345778999999999999996552 110 123456666665 8887653
No 194
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.66 E-value=0.00073 Score=72.81 Aligned_cols=97 Identities=14% Similarity=0.220 Sum_probs=58.1
Q ss_pred eEEeccccccchhhhccCC-C-eEEEEeccCCCC-chhHH----HHhhcccccccccCCCCCCCCCccchhhcccccccc
Q 039518 470 NAMDMNAYCGGFAVALNSL-P-VWVMNIVPISMK-NTLSA----IYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHY 542 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~-~-v~vmnv~p~~~~-~~l~~----~~~RGlig~~~~~~~~f~typrtyDl~H~~~~~s~~ 542 (617)
.|+|+|||.|.+++++... | .-|. -.|.. .-|.. +-+.|+-+.++ +...++.-+..||+|-++--|-.-
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~~v~---~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKIRLT---LSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDG 274 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCCEEE---EEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCC
Confidence 5999999999999988764 3 2222 22222 22221 12234433222 233344346899999988766310
Q ss_pred ccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 543 KNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 543 ~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
...+.-..+.++-++-|.|+|||.++|-
T Consensus 275 -~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 275 -IQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred -ccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 0011123468899999999999999885
No 195
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.00013 Score=71.67 Aligned_cols=117 Identities=15% Similarity=0.049 Sum_probs=77.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
.|.+|+|+|||||.++...+-.|.. .+.++|+++.+++.++++ +..+.+.+.|+.++. ..||.|+.+--+-
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~--~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG 119 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGAS--RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFG 119 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCc--EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCc
Confidence 3456999999999999888888865 678889999999998876 336888888887764 6789888774332
Q ss_pred cccc-chHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 304 DWHA-NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 304 h~~~-d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
.+.. ....+|..+.+.- -.+.+.... .. .+-+++.++..|+.+...
T Consensus 120 ~~~rhaDr~Fl~~Ale~s----~vVYsiH~a------~~--~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 120 SQRRHADRPFLLKALEIS----DVVYSIHKA------GS--RDFVEKFAADLGGTVTHI 166 (198)
T ss_pred cccccCCHHHHHHHHHhh----heEEEeecc------cc--HHHHHHHHHhcCCeEEEE
Confidence 2221 1223444444443 233332111 11 334788899999877653
No 196
>PRK04148 hypothetical protein; Provisional
Probab=97.65 E-value=0.00012 Score=68.53 Aligned_cols=90 Identities=10% Similarity=0.039 Sum_probs=64.3
Q ss_pred CCeEEEECCCCcH-HHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCC-CCCeeEEEecccccccc
Q 039518 229 VFQVLDVGCGVAS-FSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYP-SSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 229 g~rVLDIGCGtG~-~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~-d~sFDlV~~s~~l~h~~ 306 (617)
+.+|||||||+|. ++..|++.|. ++.++|+++..++.+++++. .+...|+.+-.+. -+.+|+|.+.+. +
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~--~~v~dDlf~p~~~~y~~a~liysirp----p 87 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGL--NAFVDDLFNPNLEIYKNAKLIYSIRP----P 87 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCC--eEEECcCCCCCHHHHhcCCEEEEeCC----C
Confidence 4579999999996 9999998876 67788999999999998875 5566666544332 356999998763 2
Q ss_pred cchHHHHHHHHHhccCCeEEEEE
Q 039518 307 ANDGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 307 ~d~~~~L~el~RvLrPGG~Liis 329 (617)
.+....+.++.+-+. .-++|.
T Consensus 88 ~el~~~~~~la~~~~--~~~~i~ 108 (134)
T PRK04148 88 RDLQPFILELAKKIN--VPLIIK 108 (134)
T ss_pred HHHHHHHHHHHHHcC--CCEEEE
Confidence 345556666666553 345553
No 197
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.64 E-value=0.00012 Score=81.92 Aligned_cols=123 Identities=15% Similarity=0.226 Sum_probs=80.9
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC-cEEEEecCCCCC-CCCCCeeEEE--
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG-AMISALSTKQLP-YPSSSFEMVH-- 297 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~-~~~~~~d~~~Lp-f~d~sFDlV~-- 297 (617)
..+|.+|||+++|.|.=+.++++.--..-.+.++|+++..++..+++ |+. +.+...|...++ ...+.||.|+
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 46778899999999988888877521112577889999988777655 554 455556665553 2345799999
Q ss_pred --ecccccccccch------------------HHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHc
Q 039518 298 --CSRCRVDWHAND------------------GILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAM 354 (617)
Q Consensus 298 --~s~~l~h~~~d~------------------~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~ 354 (617)
||.. -.+..++ .++|..+.++|||||+++.++-.......+ +.++.++++.
T Consensus 191 aPCSG~-G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE-----~vV~~~L~~~ 261 (470)
T PRK11933 191 APCSGE-GTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQ-----AVCLWLKETY 261 (470)
T ss_pred CCCCCC-cccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHH-----HHHHHHHHHC
Confidence 6521 1111121 457899999999999999987644422211 1255666654
No 198
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.62 E-value=3.7e-05 Score=76.93 Aligned_cols=95 Identities=17% Similarity=0.296 Sum_probs=61.3
Q ss_pred eeEEeccccccchhhhccCC--CeEEEEeccCCCCchhHHHHh----hcccc---cc-cccCCCCCCCCCccchhhcccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMKNTLSAIYN----RGILG---AF-HDWCEPFSTYPRTYDLLHANHL 538 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~~~l~~~~~----RGlig---~~-~~~~~~f~typrtyDl~H~~~~ 538 (617)
+.|||+|||.|+++..+.+. +.-|.-+-. +++++..+-+ .|+-+ +. .|..+. .+|.+||+|++..+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~--s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~--~~~~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTI--SPEQAEVGRERIRALGLQGRIRIFYRDSAKD--PFPDTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHhcCCCcceEEEecccccC--CCCCCCCEeehHHH
Confidence 36999999999998887543 222222211 2245444443 35422 22 222111 24678999999888
Q ss_pred ccccccCCCCCChhhHHhhhhhcccCCceEEEecC
Q 039518 539 FSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 539 ~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
|.+. . +...++-++.|+|+|||++++.+.
T Consensus 77 l~~~---~---~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 77 IHHI---K---DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHhC---C---CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 8754 2 357899999999999999999753
No 199
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=97.58 E-value=8.5e-05 Score=76.22 Aligned_cols=93 Identities=15% Similarity=0.190 Sum_probs=63.5
Q ss_pred eeeEEeccccccchhhhccCC--CeEEEEeccCCCC-chhHHHHhhcccccccccCCCCCCCCCccchhhcccccccccc
Q 039518 468 IRNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMK-NTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKN 544 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~-~~l~~~~~RGlig~~~~~~~~f~typrtyDl~H~~~~~s~~~~ 544 (617)
-..|||+|||.|.++.+|..+ ..- |+=.|-. ..+..+-++++-=+..|- +.++ ...+||+|+++.+|-+.
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~~~---v~gvD~s~~~~~~a~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~-- 102 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPGAV---IEALDSSPEMVAAARERGVDARTGDV-RDWK-PKPDTDVVVSNAALQWV-- 102 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCE---EEEEECCHHHHHHHHhcCCcEEEcCh-hhCC-CCCCceEEEEehhhhhC--
Confidence 378999999999999888754 222 2223333 667777777742122222 2222 13689999998888643
Q ss_pred CCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 545 RGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 545 ~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
. +...+|-|+=|+|+|||++++.
T Consensus 103 -~---d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 103 -P---EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred -C---CHHHHHHHHHHhCCCCcEEEEE
Confidence 2 3467899999999999999986
No 200
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.56 E-value=8.4e-05 Score=81.18 Aligned_cols=102 Identities=12% Similarity=0.224 Sum_probs=67.0
Q ss_pred HhccCCCCCeeeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhhc--ccccccccCCCCCCCCCccchhh
Q 039518 459 QLMNVNETEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNRG--ILGAFHDWCEPFSTYPRTYDLLH 534 (617)
Q Consensus 459 ~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~RG--lig~~~~~~~~f~typrtyDl~H 534 (617)
+.+++..+ ..|||+|||.|+++..+.+. ++- |+-.|-. .++..+-+|. + .+ .-.+..+...+.+||.|.
T Consensus 161 ~~l~l~~g--~rVLDIGcG~G~~a~~la~~~g~~---V~giDlS~~~l~~A~~~~~~l-~v-~~~~~D~~~l~~~fD~Iv 233 (383)
T PRK11705 161 RKLQLKPG--MRVLDIGCGWGGLARYAAEHYGVS---VVGVTISAEQQKLAQERCAGL-PV-EIRLQDYRDLNGQFDRIV 233 (383)
T ss_pred HHhCCCCC--CEEEEeCCCccHHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHhccC-eE-EEEECchhhcCCCCCEEE
Confidence 33446666 47999999999999888653 432 2223333 6766666653 2 11 111112222357899999
Q ss_pred ccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 535 ANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 535 ~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
+.++|.+. ..-....++-++.|+|+|||++++.
T Consensus 234 s~~~~ehv----g~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 234 SVGMFEHV----GPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred EeCchhhC----ChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 88888742 2334568899999999999999996
No 201
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.55 E-value=8.3e-05 Score=77.04 Aligned_cols=104 Identities=17% Similarity=0.287 Sum_probs=64.0
Q ss_pred HHhccCCCCCeeeEEeccccccchhhhccCC---CeEEEEeccCCCCchhHHHHhhc----cccc-ccccCCCCCCCC-C
Q 039518 458 WQLMNVNETEIRNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMKNTLSAIYNRG----ILGA-FHDWCEPFSTYP-R 528 (617)
Q Consensus 458 ~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~~~l~~~~~RG----lig~-~~~~~~~f~typ-r 528 (617)
...+++..+ ..|||+|||.|+++..|... .|..+.+. ++.+..+-+|- -+-. ..|.. .. .|| .
T Consensus 45 l~~l~l~~~--~~VLDiGcG~G~~a~~la~~~~~~v~giD~s----~~~~~~a~~~~~~~~~i~~~~~D~~-~~-~~~~~ 116 (263)
T PTZ00098 45 LSDIELNEN--SKVLDIGSGLGGGCKYINEKYGAHVHGVDIC----EKMVNIAKLRNSDKNKIEFEANDIL-KK-DFPEN 116 (263)
T ss_pred HHhCCCCCC--CEEEEEcCCCChhhHHHHhhcCCEEEEEECC----HHHHHHHHHHcCcCCceEEEECCcc-cC-CCCCC
Confidence 333445554 47999999999998888543 23333322 24555555442 1111 11211 11 144 7
Q ss_pred ccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC
Q 039518 529 TYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 529 tyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
+||+|++...+-+. ..-....+|-|+-|+|+|||++++.|-
T Consensus 117 ~FD~V~s~~~l~h~----~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 117 TFDMIYSRDAILHL----SYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CeEEEEEhhhHHhC----CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99999987665532 122456799999999999999999863
No 202
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.52 E-value=0.00012 Score=72.28 Aligned_cols=93 Identities=14% Similarity=0.261 Sum_probs=59.3
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHH----Hhhccc--ccccccCCCCCCCCCccchhhccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAI----YNRGIL--GAFHDWCEPFSTYPRTYDLLHANHLFSH 541 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~----~~RGli--g~~~~~~~~f~typrtyDl~H~~~~~s~ 541 (617)
.+|||+|||.|.++.+|..+.- .|.-.|.. +.+..+ -+.|+- ....|.. .++ ++.+||+|-+..+|..
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~-~~~-~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLPLRTDAYDIN-AAA-LNEDYDFIFSTVVFMF 106 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCCceeEeccch-hcc-ccCCCCEEEEeccccc
Confidence 4799999999999988876542 33334443 444332 234542 1122221 122 3568999998877753
Q ss_pred cccCCCCCChhhHHhhhhhcccCCceEEE
Q 039518 542 YKNRGEVCSLEDIMLEMDLIIRPQGFIII 570 (617)
Q Consensus 542 ~~~~~~~c~~~~~l~e~dRilRP~G~~i~ 570 (617)
. +.-....++-++.|.|+|||++++
T Consensus 107 ~----~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 107 L----QAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred C----CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 2 333566899999999999998544
No 203
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.51 E-value=0.0002 Score=73.74 Aligned_cols=96 Identities=10% Similarity=0.040 Sum_probs=67.9
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCC-CCC------CCCCeeEE
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQ-LPY------PSSSFEMV 296 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~-Lpf------~d~sFDlV 296 (617)
++|||||+++|.-+..|+..-.....++.+|.++...+.|++. |. .+.+..+++.+ |+- ..++||+|
T Consensus 81 k~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~i 160 (247)
T PLN02589 81 KNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFI 160 (247)
T ss_pred CEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEE
Confidence 3599999999999998886422222577778888888888764 43 46667776422 221 13689999
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEE
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis 329 (617)
+.- +.......++..+.++|+|||.+++.
T Consensus 161 FiD----adK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 161 FVD----ADKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred Eec----CCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 843 33444567888889999999998874
No 204
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.46 E-value=0.00061 Score=67.31 Aligned_cols=98 Identities=14% Similarity=0.042 Sum_probs=65.5
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCC-CC-C-CC-CCeeEEEe
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQ-LP-Y-PS-SSFEMVHC 298 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~-Lp-f-~d-~sFDlV~~ 298 (617)
+.+|||++||+|.++..+++++.. .++.+|.++.+++.++++ +. ++.+...|+.+ +. + .. ..||+|+.
T Consensus 50 g~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 457999999999999999999874 577889999998887765 33 35667777633 22 1 12 24788875
Q ss_pred cccccccc-cchHHHHHHH--HHhccCCeEEEEEeC
Q 039518 299 SRCRVDWH-ANDGILLKEV--DRVLRPNGYFVYSAP 331 (617)
Q Consensus 299 s~~l~h~~-~d~~~~L~el--~RvLrPGG~Liis~p 331 (617)
-- ++. .....++..+ ..+|+++|.+++..+
T Consensus 128 DP---Py~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 128 DP---PFFNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred Cc---CCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 32 111 1233444444 347899998888654
No 205
>PLN02823 spermine synthase
Probab=97.46 E-value=0.00069 Score=72.82 Aligned_cols=100 Identities=16% Similarity=0.118 Sum_probs=70.8
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---------CCcEEEEecCCC-CCCCCCCeeEEEe
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---------IGAMISALSTKQ-LPYPSSSFEMVHC 298 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---------~~~~~~~~d~~~-Lpf~d~sFDlV~~ 298 (617)
.++||.||+|.|..+..+++... ...++.+|+++..++.|++.. .++.+...|... +...+++||+|++
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 35699999999999998887532 236788899999999999763 245667766533 2334578999996
Q ss_pred ccccccccc------chHHHHH-HHHHhccCCeEEEEEe
Q 039518 299 SRCRVDWHA------NDGILLK-EVDRVLRPNGYFVYSA 330 (617)
Q Consensus 299 s~~l~h~~~------d~~~~L~-el~RvLrPGG~Liis~ 330 (617)
- +..++.. -..++++ .+.+.|+|||.+++..
T Consensus 183 D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 D-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred c-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 4 2222210 1245777 8999999999988754
No 206
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.45 E-value=0.00089 Score=69.86 Aligned_cols=134 Identities=19% Similarity=0.223 Sum_probs=90.2
Q ss_pred CCeEEEECCCCcHHHHHhccCCCc-EEEeeecCCcHHHHHHHH----HhCCC--cEEEEecCCC---CCCCCCCeeEEEe
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQ-TMSFAPKDGHENQIQFAL----ERGIG--AMISALSTKQ---LPYPSSSFEMVHC 298 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~-~v~v~~iDis~~~lq~A~----erg~~--~~~~~~d~~~---Lpf~d~sFDlV~~ 298 (617)
.-+||||.||.|......+..... ..++.-.|.++..++..+ ++|.. +.+..+|+.+ +.--+-..++++.
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iV 215 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIV 215 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEE
Confidence 457999999999876666655332 347777899999887665 45664 3777777533 2212335789998
Q ss_pred cccccccccc--hHHHHHHHHHhccCCeEEEEEeCCCCCCC---------CCChhhH-------HHHHHHHHHcCceEEE
Q 039518 299 SRCRVDWHAN--DGILLKEVDRVLRPNGYFVYSAPPAYRKD---------KDYPLIW-------DKLVNLTTAMCWKLIA 360 (617)
Q Consensus 299 s~~l~h~~~d--~~~~L~el~RvLrPGG~Liis~p~~~~~~---------~~~~~~W-------~~le~La~~~gw~~v~ 360 (617)
+....-+.++ ....|.-+.+.|.|||+++.+..|-.... +..+..| .+|.++.+.+||+.+.
T Consensus 216 sGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~~ 295 (311)
T PF12147_consen 216 SGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKID 295 (311)
T ss_pred ecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchhh
Confidence 8755555533 34579999999999999999875322211 1111123 3499999999998776
Q ss_pred Ee
Q 039518 361 RK 362 (617)
Q Consensus 361 ~~ 362 (617)
..
T Consensus 296 q~ 297 (311)
T PF12147_consen 296 QR 297 (311)
T ss_pred he
Confidence 44
No 207
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.44 E-value=5.4e-05 Score=66.84 Aligned_cols=99 Identities=12% Similarity=0.197 Sum_probs=59.4
Q ss_pred eeEEeccccccchhhhccC--CCeEEEEeccCCCCchhHHHH----hhcccccccccCCCC---CCCCCccchhhccc-c
Q 039518 469 RNAMDMNAYCGGFAVALNS--LPVWVMNIVPISMKNTLSAIY----NRGILGAFHDWCEPF---STYPRTYDLLHANH-L 538 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~--~~v~vmnv~p~~~~~~l~~~~----~RGlig~~~~~~~~f---~typrtyDl~H~~~-~ 538 (617)
..|||+|||.|.++.+|.+ ...=|..|=+.. ..+..+- +.++-.-++--+..+ ...+..||+|.+.+ .
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISP--EMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSH--HHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 4689999999999999987 444444443322 3333332 233322221112222 33455699999988 2
Q ss_pred ccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 539 FSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 539 ~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+..+ -+.-....+|=++-+.|+|||+++|++
T Consensus 81 ~~~~---~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFL---LPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGC---CHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccc---cchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2212 111223467888999999999999974
No 208
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.43 E-value=0.00024 Score=75.01 Aligned_cols=69 Identities=13% Similarity=0.121 Sum_probs=54.2
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----C--CCcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----G--IGAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g--~~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||||||+|.++..|++.+. .+.++|+++.+++.++++ + .++.+..+|+...++ ..||.|+++.
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~d~VvaNl 109 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYFDVCVANV 109 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cccCEEEecC
Confidence 4566799999999999999998764 567789999999988875 2 247788888766654 3689988763
No 209
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.43 E-value=0.0003 Score=76.81 Aligned_cols=96 Identities=13% Similarity=0.121 Sum_probs=70.6
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC-cEEEEecCCCCCCCCCCeeEEEecccccc
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG-AMISALSTKQLPYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~-~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h 304 (617)
.+|||++||+|.++..++.... +..+.++|+++.+++.++++ ++. +.+...|+..+....+.||+|+..-
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 4699999999999999976522 23678899999999988765 343 4466667654321145799998642
Q ss_pred cccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 305 WHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 305 ~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
. ..+..++..+.+.+++||.+.++..
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEEec
Confidence 2 2456788888888999999999853
No 210
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.41 E-value=0.00021 Score=76.13 Aligned_cols=96 Identities=11% Similarity=0.060 Sum_probs=60.7
Q ss_pred eeEEeccccccchhhhccCCCe-EEEEeccCCCC-chhHHHHh----hcccccccccCCCCCCCCCccchhhcccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPV-WVMNIVPISMK-NTLSAIYN----RGILGAFHDWCEPFSTYPRTYDLLHANHLFSHY 542 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v-~vmnv~p~~~~-~~l~~~~~----RGlig~~~~~~~~f~typrtyDl~H~~~~~s~~ 542 (617)
+.|||+|||.|.++.+|..... -|.-|=|...- .+...+-. .+-+.+..-=-+.++. +.+||+|-+.+++-++
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL~H~ 201 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVLYHR 201 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchhhcc
Confidence 7899999999999888765543 45555554432 33222111 1111111100112222 2589999999888754
Q ss_pred ccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 543 KNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 543 ~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
-+...+|-|+-|+|||||.+|+.
T Consensus 202 ------~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 202 ------KSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred ------CCHHHHHHHHHHhcCCCCEEEEE
Confidence 35678999999999999999986
No 211
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.39 E-value=0.00035 Score=68.25 Aligned_cols=118 Identities=14% Similarity=0.049 Sum_probs=69.9
Q ss_pred HhccCCCCCeeeEEeccccccchhhhccCC-C-eEEEEeccCCCCchhHHHH----hhcccccccccCC-CCCCCCCccc
Q 039518 459 QLMNVNETEIRNAMDMNAYCGGFAVALNSL-P-VWVMNIVPISMKNTLSAIY----NRGILGAFHDWCE-PFSTYPRTYD 531 (617)
Q Consensus 459 ~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~-~-v~vmnv~p~~~~~~l~~~~----~RGlig~~~~~~~-~f~typrtyD 531 (617)
..+.+..+ .+|||+|||.|.++.++... | .=|..+-+.. ..+..+- ..|+-. ..-.+. ....++..||
T Consensus 25 ~~l~~~~~--~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~--~~~~~a~~n~~~~~~~~-i~~~~~d~~~~~~~~~D 99 (187)
T PRK08287 25 SKLELHRA--KHLIDVGAGTGSVSIEAALQFPSLQVTAIERNP--DALRLIKENRQRFGCGN-IDIIPGEAPIELPGKAD 99 (187)
T ss_pred HhcCCCCC--CEEEEECCcCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHhCCCC-eEEEecCchhhcCcCCC
Confidence 33444444 57999999999998877542 2 2222222211 2233322 223311 111111 1123457899
Q ss_pred hhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec-ChHHHHHHHhhhhcCCce
Q 039518 532 LLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD-EKSLITRIRDLAPKFLWD 590 (617)
Q Consensus 532 l~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d-~~~~~~~~~~~~~~~~W~ 590 (617)
+|.+++.. ..+..++-++-|+|+|||++++.+ ..+...++.++++...++
T Consensus 100 ~v~~~~~~---------~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 100 AIFIGGSG---------GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS 150 (187)
T ss_pred EEEECCCc---------cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence 99865432 245678889999999999999976 456667777888877775
No 212
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.38 E-value=0.00064 Score=67.20 Aligned_cols=145 Identities=16% Similarity=0.194 Sum_probs=83.7
Q ss_pred ccccCcccccc--chhhHHHHHHHHH-HhccCCCCCeeeEEeccccccchhhhcc---C--CCeEEEEeccCCCCchhHH
Q 039518 435 RIGITQEEFTT--DTSFWQDQVRHYW-QLMNVNETEIRNAMDMNAYCGGFAVALN---S--LPVWVMNIVPISMKNTLSA 506 (617)
Q Consensus 435 ~~~~~~~~f~~--d~~~w~~~v~~y~-~~~~~~~~~~Rn~mDm~~~~g~faa~l~---~--~~v~vmnv~p~~~~~~l~~ 506 (617)
.+|+..+.|.. +...++..+..-. ..+.+..+ -.|+|+|||.|.|+..+. . ..|..+-+-| ..+..
T Consensus 7 ~~~~~d~~~~~~~~~~~t~~~~r~~~l~~l~~~~~--~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~----~~~~~ 80 (198)
T PRK00377 7 IPGIPDEEFERDEEIPMTKEEIRALALSKLRLRKG--DMILDIGCGTGSVTVEASLLVGETGKVYAVDKDE----KAINL 80 (198)
T ss_pred CCCCChHHHccCCCCCCCHHHHHHHHHHHcCCCCc--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCH----HHHHH
Confidence 34667777776 4457887775421 22334444 479999999999977542 2 2344443322 22332
Q ss_pred HH----hhcccc---c-ccccCCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe-cChHHH
Q 039518 507 IY----NRGILG---A-FHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR-DEKSLI 577 (617)
Q Consensus 507 ~~----~RGlig---~-~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~-d~~~~~ 577 (617)
+- .-|+.. + ..|..+..+.++..||.|...+ ....+..++-++-|+|+|||.+++. -..+.+
T Consensus 81 a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~---------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~ 151 (198)
T PRK00377 81 TRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG---------GSEKLKEIISASWEIIKKGGRIVIDAILLETV 151 (198)
T ss_pred HHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC---------CcccHHHHHHHHHHHcCCCcEEEEEeecHHHH
Confidence 22 123211 1 1233332233335688876321 2234668899999999999999983 345566
Q ss_pred HHHHhhhhcCCceEEEe
Q 039518 578 TRIRDLAPKFLWDVELH 594 (617)
Q Consensus 578 ~~~~~~~~~~~W~~~~~ 594 (617)
.++...++.+.++..+.
T Consensus 152 ~~~~~~l~~~g~~~~~~ 168 (198)
T PRK00377 152 NNALSALENIGFNLEIT 168 (198)
T ss_pred HHHHHHHHHcCCCeEEE
Confidence 77777777666655444
No 213
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.002 Score=63.01 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=77.7
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHH----HHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQF----ALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~----A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~ 306 (617)
-+||||||+|..+..|++.-...+-.-..|+++.+.+. |+.++..+..+..|...- +..++.|+++.+.-...-.
T Consensus 46 i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYVpt~ 124 (209)
T KOG3191|consen 46 ICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYVPTS 124 (209)
T ss_pred eEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcCcCC
Confidence 39999999999999998862222233456999988765 444566666666654221 2238899988764222211
Q ss_pred c----------------c----hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 307 A----------------N----DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 307 ~----------------d----~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
+ + ..+++..+..+|.|.|.+++..-..+. -+++.++.+..||....
T Consensus 125 ~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~--------p~ei~k~l~~~g~~~~~ 190 (209)
T KOG3191|consen 125 DEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK--------PKEILKILEKKGYGVRI 190 (209)
T ss_pred cccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC--------HHHHHHHHhhcccceeE
Confidence 1 1 235677888999999999997642221 23466677777876544
No 214
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.38 E-value=0.00014 Score=74.71 Aligned_cols=93 Identities=13% Similarity=0.232 Sum_probs=61.6
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hcccc---ccc-ccCCCCC-CCCCccchhhcccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RGILG---AFH-DWCEPFS-TYPRTYDLLHANHL 538 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RGlig---~~~-~~~~~f~-typrtyDl~H~~~~ 538 (617)
.+|||+|||.|.++..|..... +|+-.|.. ..+..+-+ .|+.. +.+ |..+ ++ ..+.+||+|.+..+
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~-l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQD-IAQHLETPVDLILFHAV 121 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHH-HhhhcCCCCCEEEehhH
Confidence 5899999999999999987753 23333443 44444433 34422 111 1111 22 22489999999888
Q ss_pred ccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 539 FSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 539 ~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
+.+. . +...+|-|+-|+|+|||.+++-
T Consensus 122 l~~~---~---~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 122 LEWV---A---DPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHhh---C---CHHHHHHHHHHHcCCCeEEEEE
Confidence 8754 2 3457899999999999999874
No 215
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.36 E-value=0.00051 Score=66.62 Aligned_cols=121 Identities=11% Similarity=0.120 Sum_probs=73.8
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hcccc--cccccCCCCCCCCCccchhhccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RGILG--AFHDWCEPFSTYPRTYDLLHANHLFSH 541 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RGlig--~~~~~~~~f~typrtyDl~H~~~~~s~ 541 (617)
++|||+|||.|.++.++....- .|+-.|-. ..+..+-+ .|+-. +..|+.+.+ +.+||+|-++--|..
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV---RGKFDVILFNPPYLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc---CCcccEEEECCCCCC
Confidence 4699999999999988876543 23333333 33332222 22211 223443432 469999987765532
Q ss_pred cccC---------------CCCCChhhHHhhhhhcccCCceEEEecChHH-HHHHHhhhhcCCceEEEee
Q 039518 542 YKNR---------------GEVCSLEDIMLEMDLIIRPQGFIIIRDEKSL-ITRIRDLAPKFLWDVELHS 595 (617)
Q Consensus 542 ~~~~---------------~~~c~~~~~l~e~dRilRP~G~~i~~d~~~~-~~~~~~~~~~~~W~~~~~~ 595 (617)
.... ..+..++.+|-|+.|+|+|||.+++.+.... ..++.+.++..-++.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEE
Confidence 2100 0122356889999999999999998754443 5566666666777777664
No 216
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.35 E-value=0.0002 Score=76.45 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=59.5
Q ss_pred eeEEeccccccchhhhccCCC-eEEEEeccCCCC-chhHHHHhhcc-----cccccccCCCCCCCCCccchhhccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLP-VWVMNIVPISMK-NTLSAIYNRGI-----LGAFHDWCEPFSTYPRTYDLLHANHLFSH 541 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~-v~vmnv~p~~~~-~~l~~~~~RGl-----ig~~~~~~~~f~typrtyDl~H~~~~~s~ 541 (617)
+.|||+|||.|.|+..|.... -.|.-|=|.... .+...+ .+.+ |-+.+.=-+.++. +.+||+|++.+++-+
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~-~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAV-RKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHH-HHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc
Confidence 689999999999998886543 234444333211 111111 1111 1111100123444 789999999888764
Q ss_pred cccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 542 YKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 542 ~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
. -+...+|-++-|+|+|||.+|+.
T Consensus 202 ~------~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 202 R------RSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred c------CCHHHHHHHHHHhcCCCcEEEEE
Confidence 3 24568999999999999999986
No 217
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=97.34 E-value=0.00014 Score=71.92 Aligned_cols=93 Identities=14% Similarity=0.253 Sum_probs=60.0
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHH----HHhhccc---ccccccCCCCCCCCCccchhhcccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSA----IYNRGIL---GAFHDWCEPFSTYPRTYDLLHANHLFS 540 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~----~~~RGli---g~~~~~~~~f~typrtyDl~H~~~~~s 540 (617)
-+|||+|||.|.++..|.++.. +|.-.|.. ..+.. +-++|+- ....|..+ + .++.+||+|-+..+|-
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~~~ 106 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVVLM 106 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecchh
Confidence 4799999999999999987642 22222333 33322 3344542 22334432 2 2357899999887764
Q ss_pred ccccCCCCCChhhHHhhhhhcccCCceEEE
Q 039518 541 HYKNRGEVCSLEDIMLEMDLIIRPQGFIII 570 (617)
Q Consensus 541 ~~~~~~~~c~~~~~l~e~dRilRP~G~~i~ 570 (617)
. .+.-....++-+|-|.|+|||++++
T Consensus 107 ~----~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 107 F----LEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred h----CCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 2 2333466899999999999999654
No 218
>PRK08317 hypothetical protein; Provisional
Probab=97.34 E-value=0.00022 Score=70.91 Aligned_cols=100 Identities=19% Similarity=0.277 Sum_probs=63.2
Q ss_pred ccCCCCCeeeEEeccccccchhhhccCC--C-eEEEEeccCCCC-chhHHHHhh--cccccc----cccCCCCCCCCCcc
Q 039518 461 MNVNETEIRNAMDMNAYCGGFAVALNSL--P-VWVMNIVPISMK-NTLSAIYNR--GILGAF----HDWCEPFSTYPRTY 530 (617)
Q Consensus 461 ~~~~~~~~Rn~mDm~~~~g~faa~l~~~--~-v~vmnv~p~~~~-~~l~~~~~R--Glig~~----~~~~~~f~typrty 530 (617)
+.+..+ .+|||+|||.|.++..+.+. + .-+.- .|.. +.+..+-++ +..... .|.. .++.-+.+|
T Consensus 15 ~~~~~~--~~vLdiG~G~G~~~~~~a~~~~~~~~v~~---~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~~ 88 (241)
T PRK08317 15 LAVQPG--DRVLDVGCGPGNDARELARRVGPEGRVVG---IDRSEAMLALAKERAAGLGPNVEFVRGDAD-GLPFPDGSF 88 (241)
T ss_pred cCCCCC--CEEEEeCCCCCHHHHHHHHhcCCCcEEEE---EeCCHHHHHHHHHHhhCCCCceEEEecccc-cCCCCCCCc
Confidence 334443 57999999999998887643 1 22222 2323 555666555 111111 1221 122113799
Q ss_pred chhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 531 DLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 531 Dl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
|+||+..+|.+. . +...++-++-|+|+|||++++.+
T Consensus 89 D~v~~~~~~~~~---~---~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 89 DAVRSDRVLQHL---E---DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred eEEEEechhhcc---C---CHHHHHHHHHHHhcCCcEEEEEe
Confidence 999999888754 2 35788999999999999999854
No 219
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.34 E-value=0.00028 Score=74.12 Aligned_cols=114 Identities=14% Similarity=0.192 Sum_probs=67.7
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cccccccccCCCCCCC-CCccchhhcccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GILGAFHDWCEPFSTY-PRTYDLLHANHLFSHY 542 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Glig~~~~~~~~f~ty-prtyDl~H~~~~~s~~ 542 (617)
.+|||+|||.|.++.++...+.- .|+-.|-. ..+..+.++ |+-......+...... +..||+|.++.+...
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~--~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~~- 237 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAA--KVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAEV- 237 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHHH-
Confidence 68999999999987666544321 22223333 334444333 2211122222212222 478999998755442
Q ss_pred ccCCCCCChhhHHhhhhhcccCCceEEEecC-hHHHHHHHhhhhcCCceEEEe
Q 039518 543 KNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE-KSLITRIRDLAPKFLWDVELH 594 (617)
Q Consensus 543 ~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~ 594 (617)
+..++-++-|+|+|||+++++.- .+..+++.+..++- |+....
T Consensus 238 --------l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 238 --------IKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred --------HHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence 34688899999999999999853 23345566655555 766544
No 220
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.34 E-value=0.0002 Score=70.15 Aligned_cols=130 Identities=12% Similarity=0.225 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHhcc-CCCCCeeeEEeccccccchhhhcc--CCCeEEEEeccCCCCchhHH----HHhhcc--ccccc-
Q 039518 448 SFWQDQVRHYWQLMN-VNETEIRNAMDMNAYCGGFAVALN--SLPVWVMNIVPISMKNTLSA----IYNRGI--LGAFH- 517 (617)
Q Consensus 448 ~~w~~~v~~y~~~~~-~~~~~~Rn~mDm~~~~g~faa~l~--~~~v~vmnv~p~~~~~~l~~----~~~RGl--ig~~~- 517 (617)
+.|++.+-.=..++. +. + .+|||+|||.|.++..|. ....=|.-|=+.. +.+.+ +-+.|+ +-+.+
T Consensus 25 ~~~~~~~~d~i~~~~~~~-~--~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~--~~~~~a~~~~~~~~~~~i~~i~~ 99 (181)
T TIGR00138 25 EIWERHILDSLKLLEYLD-G--KKVIDIGSGAGFPGIPLAIARPELKLTLLESNH--KKVAFLREVKAELGLNNVEIVNG 99 (181)
T ss_pred HHHHHHHHHHHHHHHhcC-C--CeEEEecCCCCccHHHHHHHCCCCeEEEEeCcH--HHHHHHHHHHHHhCCCCeEEEec
Confidence 466665533222222 33 2 589999999998776653 2221222222221 22222 223454 22221
Q ss_pred ccCCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecChHHHHHHHhhhhcCC-ceEEEe
Q 039518 518 DWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFL-WDVELH 594 (617)
Q Consensus 518 ~~~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~~~-W~~~~~ 594 (617)
|.. .++ ...+||+|-+.. + ..+.+++-++.|+|+|||.+++........++..+.+.++ |.....
T Consensus 100 d~~-~~~-~~~~fD~I~s~~-~---------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~ 165 (181)
T TIGR00138 100 RAE-DFQ-HEEQFDVITSRA-L---------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPL 165 (181)
T ss_pred chh-hcc-ccCCccEEEehh-h---------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEe
Confidence 221 222 247999987654 2 2355788889999999999999987777777777776644 444433
No 221
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.33 E-value=0.0017 Score=67.78 Aligned_cols=125 Identities=14% Similarity=0.067 Sum_probs=74.0
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh---CCCcEEE--Eec--CCCCCCCCCCeeEEEecc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER---GIGAMIS--ALS--TKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er---g~~~~~~--~~d--~~~Lpf~d~sFDlV~~s~ 300 (617)
...+|||+|||+|...-.+.+.-....+++.+|.|+.+++.++.- +.+.... ... .+..++. ..|+|++++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s~ 110 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIASY 110 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEEeh
Confidence 345799999999976555444322445788899999999887753 1111100 001 1122332 239999999
Q ss_pred ccccccc-chHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 301 CRVDWHA-NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 301 ~l~h~~~-d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
++.+... ....+++.+.+.+.+ +|+|+.|.. +.....-.++.+.+...|+.+++
T Consensus 111 ~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt----~~Gf~~i~~aR~~l~~~~~~v~A 165 (274)
T PF09243_consen 111 VLNELPSAARAELVRSLWNKTAP--VLVLVEPGT----PAGFRRIAEARDQLLEKGAHVVA 165 (274)
T ss_pred hhhcCCchHHHHHHHHHHHhccC--cEEEEcCCC----hHHHHHHHHHHHHHhhCCCceEC
Confidence 9988773 234466667666655 888887632 12222223355555556666655
No 222
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=97.33 E-value=0.00017 Score=73.55 Aligned_cols=113 Identities=14% Similarity=0.276 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----ccc--ccccccC
Q 039518 448 SFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GIL--GAFHDWC 520 (617)
Q Consensus 448 ~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Gli--g~~~~~~ 520 (617)
+.|++.+.... +...+ ..|||++||+|-++-.|.+.-----.|+-.|-. +-|.++-+| |.. =....=.
T Consensus 33 ~~wr~~~~~~~---~~~~g--~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da 107 (233)
T PF01209_consen 33 RRWRRKLIKLL---GLRPG--DRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDA 107 (233)
T ss_dssp ----SHHHHHH---T--S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BT
T ss_pred HHHHHHHHhcc---CCCCC--CEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCH
Confidence 67888775543 34444 389999999999887775431111133444544 677676655 321 1111113
Q ss_pred CCCCCCC-CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 521 EPFSTYP-RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 521 ~~f~typ-rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
|.+| || .+||.|=+...+-.. .+....|-||=|||||||.++|=|
T Consensus 108 ~~lp-~~d~sfD~v~~~fglrn~------~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 108 EDLP-FPDNSFDAVTCSFGLRNF------PDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp TB---S-TT-EEEEEEES-GGG-------SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhc-CCCCceeEEEHHhhHHhh------CCHHHHHHHHHHHcCCCeEEEEee
Confidence 4455 34 999998876665543 457789999999999999998853
No 223
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.29 E-value=0.00029 Score=73.16 Aligned_cols=90 Identities=14% Similarity=0.235 Sum_probs=56.0
Q ss_pred eeeEEeccccccchhhhccCC--CeEEEEeccCCCC-chhHHHHhhcc-ccc-ccccC-CCCCCCCCccchhhccccccc
Q 039518 468 IRNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMK-NTLSAIYNRGI-LGA-FHDWC-EPFSTYPRTYDLLHANHLFSH 541 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~-~~l~~~~~RGl-ig~-~~~~~-~~f~typrtyDl~H~~~~~s~ 541 (617)
-.+|||+|||.|.+++.|.+. +.-..+|+-.|-. +.+..+-+|.- +.. ..|-. .+|+ +.+||+|.+ +|+
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~--~~sfD~I~~--~~~- 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFA--DQSLDAIIR--IYA- 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCc--CCceeEEEE--ecC-
Confidence 356999999999999888542 1101234444554 67777766641 111 11211 1333 379999974 232
Q ss_pred cccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 542 YKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 542 ~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
...+-|+.|+|+|||++|+..
T Consensus 161 ----------~~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 161 ----------PCKAEELARVVKPGGIVITVT 181 (272)
T ss_pred ----------CCCHHHHHhhccCCCEEEEEe
Confidence 124679999999999999873
No 224
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=97.24 E-value=0.00028 Score=75.43 Aligned_cols=95 Identities=9% Similarity=0.185 Sum_probs=64.9
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhc----c---cccccccCCCCCCCCCccchhhcccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRG----I---LGAFHDWCEPFSTYPRTYDLLHANHLFS 540 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG----l---ig~~~~~~~~f~typrtyDl~H~~~~~s 540 (617)
..|||+|||.|.|+..|..... +|.-.|.. ..+.++-++. + |-..+.=.|.++..+.+||+|=+..++.
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 3799999999999988876532 33344554 5555555442 2 1122211233443347999999988888
Q ss_pred ccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 541 HYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 541 ~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+. . +...+|-|+-|+|+|||.+++.+
T Consensus 210 Hv---~---d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 210 HV---A---NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred hc---C---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 65 2 45789999999999999999974
No 225
>PRK14968 putative methyltransferase; Provisional
Probab=97.24 E-value=0.00054 Score=66.04 Aligned_cols=138 Identities=17% Similarity=0.212 Sum_probs=81.2
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHH---------hhcccccccccCCCCCCCCCccchhhcccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIY---------NRGILGAFHDWCEPFSTYPRTYDLLHANHL 538 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~---------~RGlig~~~~~~~~f~typrtyDl~H~~~~ 538 (617)
..|||+|||.|.++..|...+. +|.-.|-. +.+..+. +||+.-+-+|+.+.++. ..||+|=++.-
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~d~vi~n~p 99 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG--DKFDVILFNPP 99 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc--cCceEEEECCC
Confidence 5799999999999999876643 33333333 3444331 22244455677666543 58999854433
Q ss_pred ccc------------cccCC---CCCChhhHHhhhhhcccCCceEEEec-ChHHHHHHHhhhhcCCceEEEeeccccCCC
Q 039518 539 FSH------------YKNRG---EVCSLEDIMLEMDLIIRPQGFIIIRD-EKSLITRIRDLAPKFLWDVELHSLENREKK 602 (617)
Q Consensus 539 ~s~------------~~~~~---~~c~~~~~l~e~dRilRP~G~~i~~d-~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~ 602 (617)
|.. +.... ....+..++-++.|+|+|||.+++-- .....+++.+++...-|+......+.-..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 179 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFPFE 179 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeecccCCc
Confidence 321 00001 12234678999999999999987642 222345677788877887665544434443
Q ss_pred ceeEEEEEe
Q 039518 603 MESVLICRK 611 (617)
Q Consensus 603 ~~~~l~~~k 611 (617)
.-.+++.+|
T Consensus 180 ~~~~~~~~~ 188 (188)
T PRK14968 180 ELIVLELVK 188 (188)
T ss_pred eEEEEEEeC
Confidence 344444443
No 226
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.22 E-value=0.00047 Score=71.25 Aligned_cols=133 Identities=15% Similarity=0.142 Sum_probs=75.0
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHH--------------------hCCC------------
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALE--------------------RGIG------------ 275 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~e--------------------rg~~------------ 275 (617)
.|.++||||||.-..-..-+.. ..-+|+..|..+..++..++ .|..
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~--~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACE--WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGG--TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHH--hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 4667999999996553222222 23355566666655442221 0110
Q ss_pred -c-EEEEecCCCC-CCCC-----CCeeEEEecccccccccch---HHHHHHHHHhccCCeEEEEEeCCC--CCCC-----
Q 039518 276 -A-MISALSTKQL-PYPS-----SSFEMVHCSRCRVDWHAND---GILLKEVDRVLRPNGYFVYSAPPA--YRKD----- 337 (617)
Q Consensus 276 -~-~~~~~d~~~L-pf~d-----~sFDlV~~s~~l~h~~~d~---~~~L~el~RvLrPGG~Liis~p~~--~~~~----- 337 (617)
+ .+...|+.+. |+.. ..||+|++++|+....++. ..+++++.++|||||.|++.+-.. ++..
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F 213 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKF 213 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEec
Confidence 1 2344555333 3332 3599999999998777665 457999999999999999985311 0000
Q ss_pred CCChhhHHHHHHHHHHcCceEEEEe
Q 039518 338 KDYPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 338 ~~~~~~W~~le~La~~~gw~~v~~~ 362 (617)
+.....-+.+.+.++.+|+.+...+
T Consensus 214 ~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 214 PCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp E---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ccccCCHHHHHHHHHHcCCEEEecc
Confidence 0011112348889999999888754
No 227
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.21 E-value=0.00032 Score=69.81 Aligned_cols=123 Identities=11% Similarity=0.035 Sum_probs=73.9
Q ss_pred eeeEEeccccccchhhhccCC----CeEEEEeccCCCCchhHHHH----hhccc--c-cccccCCCCCC-C-CCccchhh
Q 039518 468 IRNAMDMNAYCGGFAVALNSL----PVWVMNIVPISMKNTLSAIY----NRGIL--G-AFHDWCEPFST-Y-PRTYDLLH 534 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~----~v~vmnv~p~~~~~~l~~~~----~RGli--g-~~~~~~~~f~t-y-prtyDl~H 534 (617)
-.+|||+|||.|.++..|... .|+.+-+.| +.+..+- +.|+- - +..|+.+.++. + +.+||+|-
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~----~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~ 116 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHE----PGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIY 116 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEech----HHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEE
Confidence 478999999999998887543 234433322 2222222 22331 1 12233133332 3 47899987
Q ss_pred ccccccccc--cCCCCCChhhHHhhhhhcccCCceEEEe-cChHHHHHHHhhhhcCCceEEEe
Q 039518 535 ANHLFSHYK--NRGEVCSLEDIMLEMDLIIRPQGFIIIR-DEKSLITRIRDLAPKFLWDVELH 594 (617)
Q Consensus 535 ~~~~~s~~~--~~~~~c~~~~~l~e~dRilRP~G~~i~~-d~~~~~~~~~~~~~~~~W~~~~~ 594 (617)
........+ ....+.....+|-++.|+|+|||.+++. +.......+.+.+..--|.+.+.
T Consensus 117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~~ 179 (202)
T PRK00121 117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVSE 179 (202)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccccc
Confidence 543221100 0122334578999999999999999996 67777777777777777877643
No 228
>PTZ00146 fibrillarin; Provisional
Probab=97.21 E-value=0.0012 Score=69.49 Aligned_cols=99 Identities=16% Similarity=0.225 Sum_probs=63.2
Q ss_pred cCCCCCeeeEEeccccccchhhhccCC-----CeEEEEeccCCCCchhHHHHhh-cccccccccCCCCCCCC---Cccch
Q 039518 462 NVNETEIRNAMDMNAYCGGFAVALNSL-----PVWVMNIVPISMKNTLSAIYNR-GILGAFHDWCEPFSTYP---RTYDL 532 (617)
Q Consensus 462 ~~~~~~~Rn~mDm~~~~g~faa~l~~~-----~v~vmnv~p~~~~~~l~~~~~R-Glig~~~~~~~~f~typ---rtyDl 532 (617)
.|.++. +|||+|||.|+|...|.+. .|+.+-+.|.-..+.+.++-+| +++-+..|-+.+. .|+ -++|+
T Consensus 129 ~IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~-~y~~~~~~vDv 205 (293)
T PTZ00146 129 PIKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQ-KYRMLVPMVDV 205 (293)
T ss_pred ccCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChh-hhhcccCCCCE
Confidence 366774 7999999999998888643 3666655443222455555554 5777777776542 122 45777
Q ss_pred hhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 533 LHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 533 ~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
|=++-.. .+ ....+++|+.|+|+|||+++|.
T Consensus 206 V~~Dva~------pd--q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 206 IFADVAQ------PD--QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEEeCCC------cc--hHHHHHHHHHHhccCCCEEEEE
Confidence 7332210 11 2225677999999999999994
No 229
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.00019 Score=68.73 Aligned_cols=136 Identities=15% Similarity=0.306 Sum_probs=89.0
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh-CCCc--EEEEe-----c--CCCCCCCCCCeeEEEe
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER-GIGA--MISAL-----S--TKQLPYPSSSFEMVHC 298 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er-g~~~--~~~~~-----d--~~~Lpf~d~sFDlV~~ 298 (617)
|.+||++|.|--.++..|....+...+|.-.|.++..++..++- ..+. .+... . ..+......+||.|+|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 35699999996666555555444445666778888887766542 1110 00000 0 1111223468999999
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEee-eeEEEeecc
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKI-QTAIWIKEE 372 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~~-~~~IwqKp~ 372 (617)
+.|+. +.+..+.++..+.++|+|.|..++..|.. +...+.+.+.+...||.+....+ +..|||+-.
T Consensus 110 ADClF-fdE~h~sLvdtIk~lL~p~g~Al~fsPRR-------g~sL~kF~de~~~~gf~v~l~enyde~iwqrh~ 176 (201)
T KOG3201|consen 110 ADCLF-FDEHHESLVDTIKSLLRPSGRALLFSPRR-------GQSLQKFLDEVGTVGFTVCLEENYDEAIWQRHG 176 (201)
T ss_pred ccchh-HHHHHHHHHHHHHHHhCcccceeEecCcc-------cchHHHHHHHHHhceeEEEecccHhHHHHHHHH
Confidence 99875 34466789999999999999988887632 22366688888889998876544 356776654
No 230
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.19 E-value=0.00081 Score=69.07 Aligned_cols=121 Identities=17% Similarity=0.209 Sum_probs=71.7
Q ss_pred eeEEeccccccchhhhccCCC---eEEEEeccCCCCchhHHHHhh----cccccccccCCCCCCCCCccchhhccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLP---VWVMNIVPISMKNTLSAIYNR----GILGAFHDWCEPFSTYPRTYDLLHANHLFSH 541 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~---v~vmnv~p~~~~~~l~~~~~R----Glig~~~~~~~~f~typrtyDl~H~~~~~s~ 541 (617)
.+|||+|||.|..+.++.... |+.+-+-| ..+..+-++ |+-...+ +..-..+||+|.|+-....
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~----~~l~~A~~n~~~~~~~~~~~-----~~~~~~~fD~Vvani~~~~ 191 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAKKVLAVDIDP----QAVEAARENAELNGVELNVY-----LPQGDLKADVIVANILANP 191 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEEECCH----HHHHHHHHHHHHcCCCceEE-----EccCCCCcCEEEEcCcHHH
Confidence 579999999998877765443 33333222 333333333 3311111 1100116999986543331
Q ss_pred cccCCCCCChhhHHhhhhhcccCCceEEEecC-hHHHHHHHhhhhcCCceEEEeeccccCCCceeEEEEEe
Q 039518 542 YKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE-KSLITRIRDLAPKFLWDVELHSLENREKKMESVLICRK 611 (617)
Q Consensus 542 ~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~k 611 (617)
+..++-++-|+|+|||++|+++- .+....+.+.++...++......+ +.-..++++|
T Consensus 192 ---------~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~----~~W~~~~~~~ 249 (250)
T PRK00517 192 ---------LLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLER----GEWVALVGKK 249 (250)
T ss_pred ---------HHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEe----CCEEEEEEEe
Confidence 34677899999999999999864 344567777777777876654322 1234555555
No 231
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=97.16 E-value=0.00049 Score=70.42 Aligned_cols=111 Identities=14% Similarity=0.312 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhcc-cc-----cccccC
Q 039518 448 SFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGI-LG-----AFHDWC 520 (617)
Q Consensus 448 ~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGl-ig-----~~~~~~ 520 (617)
..|++.+- ..+++.+| -+|||++||+|=+|..+.+.-= .-.|+-.|-. +-|.++-+|-- .| ..+-==
T Consensus 37 ~~Wr~~~i---~~~~~~~g--~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dA 110 (238)
T COG2226 37 RLWRRALI---SLLGIKPG--DKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDA 110 (238)
T ss_pred HHHHHHHH---HhhCCCCC--CEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEech
Confidence 56766552 22334444 6899999999999998864421 3334444555 67777776653 11 112222
Q ss_pred CCCCCCC-CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 521 EPFSTYP-RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 521 ~~f~typ-rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
|.+| || .|||++=++.-+-+. =+++..|-||-|||+|||-+++=
T Consensus 111 e~LP-f~D~sFD~vt~~fglrnv------~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 111 ENLP-FPDNSFDAVTISFGLRNV------TDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred hhCC-CCCCccCEEEeeehhhcC------CCHHHHHHHHHHhhcCCeEEEEE
Confidence 4456 44 999998877666543 26788999999999999987774
No 232
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=97.15 E-value=0.00047 Score=70.59 Aligned_cols=114 Identities=16% Similarity=0.203 Sum_probs=66.6
Q ss_pred CCeeeEEeccccccchhhhccCC----CeEEEEeccCCCCchhHHHHhhc-ccccc-cccCCCCCCCCCccchhhccccc
Q 039518 466 TEIRNAMDMNAYCGGFAVALNSL----PVWVMNIVPISMKNTLSAIYNRG-ILGAF-HDWCEPFSTYPRTYDLLHANHLF 539 (617)
Q Consensus 466 ~~~Rn~mDm~~~~g~faa~l~~~----~v~vmnv~p~~~~~~l~~~~~RG-lig~~-~~~~~~f~typrtyDl~H~~~~~ 539 (617)
..-.+|||+|||.|.++..|... .|...-+.| ..+..+-++- =+.+. .|-. .+. .+.+||+|+++..|
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~----~~i~~a~~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~l 103 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSP----AMLAEARSRLPDCQFVEADIA-SWQ-PPQALDLIFANASL 103 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCH----HHHHHHHHhCCCCeEEECchh-ccC-CCCCccEEEEccCh
Confidence 33478999999999999888643 233332211 3333333331 01111 1211 111 23799999999888
Q ss_pred cccccCCCCCChhhHHhhhhhcccCCceEEEec--Ch--HHHHHHHhhhhcCCceE
Q 039518 540 SHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD--EK--SLITRIRDLAPKFLWDV 591 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d--~~--~~~~~~~~~~~~~~W~~ 591 (617)
... . +...+|-+|-|+|+|||.+++.- .. .....+++++....|..
T Consensus 104 ~~~---~---d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 153 (258)
T PRK01683 104 QWL---P---DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQ 153 (258)
T ss_pred hhC---C---CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHH
Confidence 643 2 34679999999999999999962 11 11123455555555643
No 233
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.13 E-value=0.0023 Score=67.62 Aligned_cols=98 Identities=15% Similarity=0.156 Sum_probs=64.2
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
++.|||||||+|.++...++.|.. .+.+++.| +|.+.|++- .+ .+.+..+.++++.+|+ ..|+|++--..
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~--~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPE-k~DviISEPMG 253 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAK--KVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELPE-KVDVIISEPMG 253 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcc--eEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCch-hccEEEeccch
Confidence 344999999999999888888765 45566644 555777653 22 2455566778877764 59999974322
Q ss_pred cccc-cchHHHHHHHHHhccCCeEEEEEe
Q 039518 303 VDWH-ANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 303 ~h~~-~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.... +..-+...-..|.|+|.|..+-+.
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 2112 222233344569999999987654
No 234
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.09 E-value=0.00034 Score=69.70 Aligned_cols=96 Identities=15% Similarity=0.216 Sum_probs=59.5
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhc---ccccccccCCCCCCCCCccchhhcccccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRG---ILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKN 544 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG---lig~~~~~~~~f~typrtyDl~H~~~~~s~~~~ 544 (617)
..|||+|||.|.|...|....- ...+.-.|.. ..+..+-++. +.-+..|. +.++..+.+||+|.+..++...
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~vi~~~~l~~~-- 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDA-EKLPLEDSSFDLIVSNLALQWC-- 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecch-hhCCCCCCceeEEEEhhhhhhc--
Confidence 5799999999999988865320 0011222222 3333333332 11122222 2233334899999988887632
Q ss_pred CCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 545 RGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 545 ~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
.+...+|-++.|+|+|||++++..
T Consensus 112 ----~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 112 ----DDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred ----cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 245689999999999999999963
No 235
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.08 E-value=0.003 Score=62.36 Aligned_cols=93 Identities=19% Similarity=0.242 Sum_probs=65.0
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHH----hCCC-cEEEEecCCCCCCCCCCeeEEEeccccccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALE----RGIG-AMISALSTKQLPYPSSSFEMVHCSRCRVDW 305 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~e----rg~~-~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~ 305 (617)
+++|||+|.|.-+..|+=..+.. .++-+|....-+.+.+. -+++ +.+....++. +....+||+|++- ++.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~-~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aR-Av~-- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDL-QVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTAR-AVA-- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTS-EEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEE-SSS--
T ss_pred eEEecCCCCCChhHHHHHhCCCC-cEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEee-hhc--
Confidence 69999999998887776543322 56667777766554433 3665 7777777777 5567889999965 332
Q ss_pred ccchHHHHHHHHHhccCCeEEEEEe
Q 039518 306 HANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 306 ~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
....++.-+..+|++||.+++--
T Consensus 126 --~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 126 --PLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp --SHHHHHHHHGGGEEEEEEEEEEE
T ss_pred --CHHHHHHHHHHhcCCCCEEEEEc
Confidence 56688999999999999998853
No 236
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.06 E-value=0.0034 Score=67.21 Aligned_cols=96 Identities=11% Similarity=0.084 Sum_probs=64.8
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccc
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h 304 (617)
...+|+++||+||++|.|+..|+++|. .|+++|..+ +-.. ......+.....+..+...+.+.+|.++|-.
T Consensus 208 ~~~~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~-l~~~-L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDm---- 278 (357)
T PRK11760 208 RLAPGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGP-MAQS-LMDTGQVEHLRADGFKFRPPRKNVDWLVCDM---- 278 (357)
T ss_pred ccCCCCEEEEeCCCCcHHHHHHHHcCC---EEEEEechh-cCHh-hhCCCCEEEEeccCcccCCCCCCCCEEEEec----
Confidence 346788999999999999999999987 455667443 2122 2223346666655444322367899999753
Q ss_pred cccchHHHHHHHHHhccCC--eEEEEEe
Q 039518 305 WHANDGILLKEVDRVLRPN--GYFVYSA 330 (617)
Q Consensus 305 ~~~d~~~~L~el~RvLrPG--G~Liis~ 330 (617)
.+.|...+.-+.+.|..| ..+++..
T Consensus 279 -ve~P~rva~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 279 -VEKPARVAELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred -ccCHHHHHHHHHHHHhcCcccEEEEEE
Confidence 346888888888888777 4555543
No 237
>PRK00536 speE spermidine synthase; Provisional
Probab=97.04 E-value=0.0041 Score=64.67 Aligned_cols=92 Identities=14% Similarity=0.131 Sum_probs=67.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---------CCcEEEEecCCCCCCCCCCeeEEEe
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---------IGAMISALSTKQLPYPSSSFEMVHC 298 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---------~~~~~~~~d~~~Lpf~d~sFDlV~~ 298 (617)
..++||=||.|.|..+..+++..- .++-+|+++..++.+++.. .++.+.. ... ....++||+|+.
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~~fDVIIv 145 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIKKYDLIIC 145 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhh--hccCCcCCEEEE
Confidence 346799999999999999998852 7778899999999999842 2233332 111 112368999995
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
-. + ....+.+.+.|.|+|||.++.-..
T Consensus 146 Ds-~-----~~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 146 LQ-E-----PDIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred cC-C-----CChHHHHHHHHhcCCCcEEEECCC
Confidence 42 1 346788999999999999999653
No 238
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.03 E-value=0.004 Score=68.16 Aligned_cols=102 Identities=17% Similarity=0.113 Sum_probs=75.7
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC---CcEEEEecCCC-CC---CCCCCeeEEE
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI---GAMISALSTKQ-LP---YPSSSFEMVH 297 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~---~~~~~~~d~~~-Lp---f~d~sFDlV~ 297 (617)
|++|||+=|=||.|+.+.+..|.. +++.+|.|...++.|+++ |+ ++.+.++|+-. +. -...+||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~--~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGAS--EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCC--ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 778999999999999999988874 567779999999999987 43 25677777522 22 2234899999
Q ss_pred eccc--------ccccccchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 298 CSRC--------RVDWHANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 298 ~s~~--------l~h~~~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
.--- ......+...++..+.++|+|||.+++++..
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 6310 1111134466899999999999999998753
No 239
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.03 E-value=0.0056 Score=64.43 Aligned_cols=148 Identities=15% Similarity=0.184 Sum_probs=92.6
Q ss_pred HHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHH---HHHHHhCC-C--cE----
Q 039518 208 EYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQI---QFALERGI-G--AM---- 277 (617)
Q Consensus 208 ~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~l---q~A~erg~-~--~~---- 277 (617)
..++.|..+.+.... .....+||--|||.|.++..|+..|. ...+.+.|--|+ .++..... + ..
T Consensus 133 pii~~l~~lfp~~~~---~r~ki~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPf 206 (369)
T KOG2798|consen 133 PIIEELNSLFPSRGK---ERTKIRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLICSSFILNYCKQENQFTIYPF 206 (369)
T ss_pred hHHHHHHhhCCCccc---cccCceEEecCCCchhHHHHHHHhcc---cccccHHHHHHHHHHHHHHHhhccCCcEEEEee
Confidence 445666666654322 13455799999999999999998876 345556666554 23331100 0 00
Q ss_pred -----------------------------------EEEecCCCC-C--CCCCCeeEEEecccccccccchHHHHHHHHHh
Q 039518 278 -----------------------------------ISALSTKQL-P--YPSSSFEMVHCSRCRVDWHANDGILLKEVDRV 319 (617)
Q Consensus 278 -----------------------------------~~~~d~~~L-p--f~d~sFDlV~~s~~l~h~~~d~~~~L~el~Rv 319 (617)
+..+|+.+. + -..++||+|+..+ ++.-..+.-.+|..+..+
T Consensus 207 Ih~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf-FIDTa~NileYi~tI~~i 285 (369)
T KOG2798|consen 207 IHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF-FIDTAHNILEYIDTIYKI 285 (369)
T ss_pred eeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEE-EeechHHHHHHHHHHHHh
Confidence 000111000 0 1124699998764 344345677899999999
Q ss_pred ccCCeEEEEEeCCCCCCCCCCh--------hhHHHHHHHHHHcCceEEEEe
Q 039518 320 LRPNGYFVYSAPPAYRKDKDYP--------LIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 320 LrPGG~Liis~p~~~~~~~~~~--------~~W~~le~La~~~gw~~v~~~ 362 (617)
|+|||+++=.+|..+....+++ ...+.+..+++..||+++..+
T Consensus 286 Lk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 286 LKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred ccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 9999999998886544333222 235668999999999999865
No 240
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.96 E-value=0.0042 Score=62.07 Aligned_cols=94 Identities=14% Similarity=0.119 Sum_probs=61.4
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++..|||+-||.|.|+..+++.+. ...+.++|+++.+++..+++ ++. +....+|...+.- .+.||-|++..
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l 177 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL 177 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred CcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence 3456799999999999999998321 12467779998888777654 333 5567788777654 78899998753
Q ss_pred cccccccchHHHHHHHHHhccCCeEEE
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFV 327 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Li 327 (617)
+..-..+|..+.+++++||.+-
T Consensus 178 -----p~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 -----PESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -----TSSGGGGHHHHHHHEEEEEEEE
T ss_pred -----hHHHHHHHHHHHHHhcCCcEEE
Confidence 3233468899999999999874
No 241
>PRK04266 fibrillarin; Provisional
Probab=96.96 E-value=0.0034 Score=63.87 Aligned_cols=97 Identities=11% Similarity=0.254 Sum_probs=54.7
Q ss_pred hccCCCCCeeeEEeccccccchhhhccCC----CeEEEEeccCCCCchhH----HHHhh-cccccccccCCCCC--CCCC
Q 039518 460 LMNVNETEIRNAMDMNAYCGGFAVALNSL----PVWVMNIVPISMKNTLS----AIYNR-GILGAFHDWCEPFS--TYPR 528 (617)
Q Consensus 460 ~~~~~~~~~Rn~mDm~~~~g~faa~l~~~----~v~vmnv~p~~~~~~l~----~~~~R-Glig~~~~~~~~f~--typr 528 (617)
.+++..+. .|||+|||.|++...|.+. .|+.+-+-| .-|. .+-+| ++.-+..|-.++.. ..+.
T Consensus 67 ~l~i~~g~--~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~----~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~ 140 (226)
T PRK04266 67 NFPIKKGS--KVLYLGAASGTTVSHVSDIVEEGVVYAVEFAP----RPMRELLEVAEERKNIIPILADARKPERYAHVVE 140 (226)
T ss_pred hCCCCCCC--EEEEEccCCCHHHHHHHHhcCCCeEEEEECCH----HHHHHHHHHhhhcCCcEEEECCCCCcchhhhccc
Confidence 36677774 6999999999999888654 344443322 2222 22222 23344445443311 1234
Q ss_pred ccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEE
Q 039518 529 TYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIII 570 (617)
Q Consensus 529 tyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~ 570 (617)
+||.|= +.. ...=....+|-|+-|+|+|||.++|
T Consensus 141 ~~D~i~-----~d~---~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 141 KVDVIY-----QDV---AQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred cCCEEE-----ECC---CChhHHHHHHHHHHHhcCCCcEEEE
Confidence 577752 111 1000012346799999999999999
No 242
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.92 E-value=0.0029 Score=66.68 Aligned_cols=106 Identities=15% Similarity=0.156 Sum_probs=66.6
Q ss_pred CCCCeEEEECCCCcHHHHHhccC------CCcEEEeeecCCcHHHHHHHHHh----CCC---cEEEEecCCCCCC-C-CC
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPL------DIQTMSFAPKDGHENQIQFALER----GIG---AMISALSTKQLPY-P-SS 291 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~------gv~~v~v~~iDis~~~lq~A~er----g~~---~~~~~~d~~~Lpf-~-d~ 291 (617)
.++.+|||..||+|.|...+.+. ......+.+.|+++.++..|+-+ +.. ..+...|.-..+. . .+
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~ 124 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ 124 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 34557999999999998887652 11234788999999998887653 322 2366666533332 2 47
Q ss_pred CeeEEEeccccccc--c-----c-------------chHHHHHHHHHhccCCeEEEEEeCC
Q 039518 292 SFEMVHCSRCRVDW--H-----A-------------NDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 292 sFDlV~~s~~l~h~--~-----~-------------d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
.||+|+++--.... . . ....++..+.+.|++||++++..|.
T Consensus 125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 89999987322211 0 0 0124788899999999999998874
No 243
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.92 E-value=0.0085 Score=62.97 Aligned_cols=99 Identities=15% Similarity=0.050 Sum_probs=72.0
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---------CCcEEEEecCCCC-CCCCCCeeEEEec
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---------IGAMISALSTKQL-PYPSSSFEMVHCS 299 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---------~~~~~~~~d~~~L-pf~d~sFDlV~~s 299 (617)
++||-||.|.|..+..+++... ...++.+|++++.++.+++.. ..+.+...|.... .-...+||+|++-
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 5799999999999999998864 337788899999999999862 2245555554222 2123489999964
Q ss_pred cccccccc----chHHHHHHHHHhccCCeEEEEEe
Q 039518 300 RCRVDWHA----NDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 300 ~~l~h~~~----d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+.-+... .-..+++.+.|.|+++|.++.-.
T Consensus 157 -~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 157 -STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred -CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 2322110 12679999999999999999964
No 244
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.91 E-value=0.00043 Score=70.24 Aligned_cols=99 Identities=10% Similarity=0.149 Sum_probs=56.6
Q ss_pred eeEEeccccccchhhhccCC---CeEEEEeccCCCC-chhHHHHhh----cccccccccCCCCCCCC-Cccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMK-NTLSAIYNR----GILGAFHDWCEPFSTYP-RTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~-~~l~~~~~R----Glig~~~~~~~~f~typ-rtyDl~H~~~~~ 539 (617)
.+|||+|||.|.++..|.+. |-+ +++-.|-. +-|..+-++ +...-.+--+..+..+| ..+|+|.+...+
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~--~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l 132 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNV--KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL 132 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecch
Confidence 57999999999998877542 211 12222332 344333322 21100010111222223 468988776666
Q ss_pred cccccCCCCCChhhHHhhhhhcccCCceEEEecC
Q 039518 540 SHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
.+. ..=....+|-||-|+|+|||.+++.|.
T Consensus 133 ~~~----~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 133 QFL----PPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred hhC----CHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 532 111235789999999999999999864
No 245
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.89 E-value=0.0044 Score=68.69 Aligned_cols=98 Identities=21% Similarity=0.369 Sum_probs=80.0
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC----CcEEEEecCCCCCCCCCCeeEEEecccccccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI----GAMISALSTKQLPYPSSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~----~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~ 306 (617)
++|-+|||.-.+...+.+-|.. +|+.+|+|.-.++....++. ...+...|+..+.|++++||+|+--..+.+..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 5999999999999999888776 78888999999888877753 25677888999999999999999877666655
Q ss_pred cch---------HHHHHHHHHhccCCeEEEEEe
Q 039518 307 AND---------GILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 307 ~d~---------~~~L~el~RvLrPGG~Liis~ 330 (617)
.+- ...+.++.|+|+|||.++..+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 332 235899999999999977654
No 246
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.86 E-value=0.0017 Score=63.97 Aligned_cols=115 Identities=15% Similarity=0.182 Sum_probs=73.8
Q ss_pred hHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEE
Q 039518 207 PEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMISA 280 (617)
Q Consensus 207 ~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~ 280 (617)
+..-+.+-+++... . -.+.++||+=||+|.++...+++|.. .++.+|.+...++..+++ +.. +.+..
T Consensus 26 drvrealFniL~~~-~----~~g~~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~ 98 (183)
T PF03602_consen 26 DRVREALFNILQPR-N----LEGARVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIK 98 (183)
T ss_dssp HHHHHHHHHHHHCH------HTT-EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEE
T ss_pred HHHHHHHHHHhccc-c----cCCCeEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHHhCCCcceeeec
Confidence 34445566666432 0 24567999999999999999999976 566789999988877765 332 45555
Q ss_pred ecC-CCC---CCCCCCeeEEEecccccccccc--hHHHHHHHH--HhccCCeEEEEEeC
Q 039518 281 LST-KQL---PYPSSSFEMVHCSRCRVDWHAN--DGILLKEVD--RVLRPNGYFVYSAP 331 (617)
Q Consensus 281 ~d~-~~L---pf~d~sFDlV~~s~~l~h~~~d--~~~~L~el~--RvLrPGG~Liis~p 331 (617)
.|. ..+ ......||+|+.-- ++... ...++..+. .+|+++|.+++...
T Consensus 99 ~d~~~~l~~~~~~~~~fDiIflDP---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 99 GDAFKFLLKLAKKGEKFDIIFLDP---PYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp SSHHHHHHHHHHCTS-EEEEEE-----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred cCHHHHHHhhcccCCCceEEEECC---CcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 553 222 12467899999652 33323 256777776 79999999999764
No 247
>PRK05785 hypothetical protein; Provisional
Probab=96.85 E-value=0.0019 Score=65.55 Aligned_cols=105 Identities=12% Similarity=0.199 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhhcccccccccCCCCCC
Q 039518 448 SFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNRGILGAFHDWCEPFST 525 (617)
Q Consensus 448 ~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~RGlig~~~~~~~~f~t 525 (617)
..|++.+-...... +..+ .+|||+|||.|-++..|.+. +. +|+-.|-. +-|..+-+++ ...+.-.+.+|.
T Consensus 35 ~~wr~~~~~~l~~~-~~~~--~~VLDlGcGtG~~~~~l~~~~~~---~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp~ 106 (226)
T PRK05785 35 VRWRAELVKTILKY-CGRP--KKVLDVAAGKGELSYHFKKVFKY---YVVALDYAENMLKMNLVAD--DKVVGSFEALPF 106 (226)
T ss_pred HHHHHHHHHHHHHh-cCCC--CeEEEEcCCCCHHHHHHHHhcCC---EEEEECCCHHHHHHHHhcc--ceEEechhhCCC
Confidence 56877654432211 1222 58999999999999888765 33 44445555 5666665553 122333344442
Q ss_pred CCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCc
Q 039518 526 YPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQG 566 (617)
Q Consensus 526 yprtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G 566 (617)
=..+||+|-+...+-++ -+.+..|-||-|+|||.+
T Consensus 107 ~d~sfD~v~~~~~l~~~------~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 107 RDKSFDVVMSSFALHAS------DNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCEEEEEecChhhcc------CCHHHHHHHHHHHhcCce
Confidence 23899999987765433 356789999999999953
No 248
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.83 E-value=0.0027 Score=68.78 Aligned_cols=92 Identities=17% Similarity=0.146 Sum_probs=61.6
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCC-C-------C---C-----
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQL-P-------Y---P----- 289 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~L-p-------f---~----- 289 (617)
+|||++||+|.++..|++... .++++|+++.+++.|+++ ++ ++.+..+|+.++ + + .
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred cEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 599999999999998887642 688899999999998875 33 466777775442 1 1 0
Q ss_pred CCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 290 SSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 290 d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
...||+|+.---. ..-...++..+. +|++.++++..
T Consensus 277 ~~~~d~v~lDPPR---~G~~~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 277 SYNCSTIFVDPPR---AGLDPDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred cCCCCEEEECCCC---CCCcHHHHHHHH---cCCcEEEEEcC
Confidence 1237998854211 111234444443 48999999874
No 249
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.83 E-value=0.0033 Score=68.60 Aligned_cols=91 Identities=15% Similarity=0.103 Sum_probs=54.4
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHH-HHHHHhCCCcE-EEEecCCCCCCCCCCeeEEEecccccccccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQI-QFALERGIGAM-ISALSTKQLPYPSSSFEMVHCSRCRVDWHAN 308 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~l-q~A~erg~~~~-~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d 308 (617)
+||-++=..|.++..|+..++.. ++-.=++.... +.+..++.+.. +...+.. -+++ +.+|+|+. .++..
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~--~~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~-~~~~-~~~d~vl~-----~~PK~ 117 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYS--IGDSYISELATRENLRLNGIDESSVKFLDST-ADYP-QQPGVVLI-----KVPKT 117 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCe--eehHHHHHHHHHHHHHHcCCCcccceeeccc-cccc-CCCCEEEE-----EeCCC
Confidence 49999999999999999766642 21111222222 23334455432 2232221 1223 44999873 34433
Q ss_pred ---hHHHHHHHHHhccCCeEEEEEe
Q 039518 309 ---DGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 309 ---~~~~L~el~RvLrPGG~Liis~ 330 (617)
.+..|..+.++|.||+.++...
T Consensus 118 ~~~l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 118 LALLEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 4567889999999999987654
No 250
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.79 E-value=0.0079 Score=68.36 Aligned_cols=109 Identities=14% Similarity=0.144 Sum_probs=68.8
Q ss_pred CCCeEEEECCCCcHHHHHhccCCC-------cEEEeeecCCcHHHHHHHHHh----C-CCcEEEEecCCC--C---CCCC
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDI-------QTMSFAPKDGHENQIQFALER----G-IGAMISALSTKQ--L---PYPS 290 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv-------~~v~v~~iDis~~~lq~A~er----g-~~~~~~~~d~~~--L---pf~d 290 (617)
...+|||.|||+|.|...++.+.. ....+.+.|+++..++.++.+ + ....+...+... + .-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 345799999999999988875421 135789999999999988765 1 223333333211 1 1112
Q ss_pred CCeeEEEeccccccccc----------------------------------c-----------hHHHH-HHHHHhccCCe
Q 039518 291 SSFEMVHCSRCRVDWHA----------------------------------N-----------DGILL-KEVDRVLRPNG 324 (617)
Q Consensus 291 ~sFDlV~~s~~l~h~~~----------------------------------d-----------~~~~L-~el~RvLrPGG 324 (617)
+.||+|+++--..-... + ...++ ..+.++|++||
T Consensus 111 ~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G 190 (524)
T TIGR02987 111 DLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNG 190 (524)
T ss_pred CcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCC
Confidence 57999998732221100 0 01123 45789999999
Q ss_pred EEEEEeCCCCCC
Q 039518 325 YFVYSAPPAYRK 336 (617)
Q Consensus 325 ~Liis~p~~~~~ 336 (617)
++.+..|.....
T Consensus 191 ~~~~I~P~s~l~ 202 (524)
T TIGR02987 191 YVSIISPASWLG 202 (524)
T ss_pred EEEEEEChHHhc
Confidence 999999865443
No 251
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.74 E-value=0.00056 Score=65.10 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=45.8
Q ss_pred CCCCCCCCCCeeEEEecccccccc-cchHHHHHHHHHhccCCeEEEEEeCCCCC
Q 039518 283 TKQLPYPSSSFEMVHCSRCRVDWH-ANDGILLKEVDRVLRPNGYFVYSAPPAYR 335 (617)
Q Consensus 283 ~~~Lpf~d~sFDlV~~s~~l~h~~-~d~~~~L~el~RvLrPGG~Liis~p~~~~ 335 (617)
....+|.++|.|+|.+.+++.|+. ++...++++.+|+|||||+|-++.|...+
T Consensus 38 s~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 38 SNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred hhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcch
Confidence 456789999999999999999988 44567999999999999999999986543
No 252
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=96.73 E-value=0.0014 Score=64.66 Aligned_cols=93 Identities=15% Similarity=0.218 Sum_probs=57.8
Q ss_pred eeEEeccccccchhhhccCC-----CeEEEEeccCCCCchhHHHHhhc-----ccccccccCCCCCCCCCccchhhcccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL-----PVWVMNIVPISMKNTLSAIYNRG-----ILGAFHDWCEPFSTYPRTYDLLHANHL 538 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-----~v~vmnv~p~~~~~~l~~~~~RG-----lig~~~~~~~~f~typrtyDl~H~~~~ 538 (617)
.+|||+|||.|.++.++... .+..+.+. +..+..+-++. +--+.+|-.+ .+.-+.+||+|++...
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~----~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~ 115 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAPDRGKVTGVDFS----SEMLEVAKKKSELPLNIEFIQADAEA-LPFEDNSFDAVTIAFG 115 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcCCCceEEEEECC----HHHHHHHHHHhccCCCceEEecchhc-CCCCCCcEEEEEEeee
Confidence 68999999999998887533 23333221 13444444432 1111122222 2211368999997766
Q ss_pred ccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 539 FSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 539 ~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+... .....++-++-++|+|||++++.+
T Consensus 116 ~~~~------~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 116 LRNV------TDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred eCCc------ccHHHHHHHHHHHcCCCcEEEEEE
Confidence 6533 346788999999999999999854
No 253
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.0088 Score=61.90 Aligned_cols=129 Identities=16% Similarity=0.120 Sum_probs=88.9
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----C--CCcEEEEecCCCCCCC--CCCee
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----G--IGAMISALSTKQLPYP--SSSFE 294 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g--~~~~~~~~d~~~Lpf~--d~sFD 294 (617)
+.+.||.+|||-|.|+|+++.++++. +.+. .+...|+++...+.|++. + -++.+.+-|+....|. +..+|
T Consensus 101 L~i~PGsvV~EsGTGSGSlShaiaraV~ptG-hl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aD 179 (314)
T KOG2915|consen 101 LEIRPGSVVLESGTGSGSLSHAIARAVAPTG-HLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKAD 179 (314)
T ss_pred hcCCCCCEEEecCCCcchHHHHHHHhhCcCc-ceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccc
Confidence 45678889999999999999999876 3322 455568899988888764 3 3577777777665553 57799
Q ss_pred EEEecccccccccchHHHHHHHHHhccCCe-EEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEeeeeEEEee
Q 039518 295 MVHCSRCRVDWHANDGILLKEVDRVLRPNG-YFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIK 370 (617)
Q Consensus 295 lV~~s~~l~h~~~d~~~~L~el~RvLrPGG-~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~~~~~IwqK 370 (617)
.|+. .++ .|-.++--++.+||.+| +|+--.|.+. .-++--+++++.||-.+. .+.+|.+
T Consensus 180 aVFL-----DlP-aPw~AiPha~~~lk~~g~r~csFSPCIE--------Qvqrtce~l~~~gf~~i~---~vEv~~~ 239 (314)
T KOG2915|consen 180 AVFL-----DLP-APWEAIPHAAKILKDEGGRLCSFSPCIE--------QVQRTCEALRSLGFIEIE---TVEVLLV 239 (314)
T ss_pred eEEE-----cCC-ChhhhhhhhHHHhhhcCceEEeccHHHH--------HHHHHHHHHHhCCCceEE---EEEeehh
Confidence 9973 334 67778888888999887 5554444321 133455677788997765 3444443
No 254
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.018 Score=62.53 Aligned_cols=132 Identities=16% Similarity=0.214 Sum_probs=83.7
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccCCCc-EEEeeecCCcHHHHHHHHHh----CCC-cEEEEecCCCCC--CC-CCCee
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPLDIQ-TMSFAPKDGHENQIQFALER----GIG-AMISALSTKQLP--YP-SSSFE 294 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~gv~-~v~v~~iDis~~~lq~A~er----g~~-~~~~~~d~~~Lp--f~-d~sFD 294 (617)
+...+|.+|||+.++.|.=+.++++.... ..-|.++|+++..++...++ |+. +.+...|...++ .+ .+.||
T Consensus 152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD 231 (355)
T COG0144 152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFD 231 (355)
T ss_pred cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCc
Confidence 34567888999999999877777776322 22357889999888776654 554 355666655554 12 23599
Q ss_pred EEEe----cc-ccc--------cccc-c-------hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHH
Q 039518 295 MVHC----SR-CRV--------DWHA-N-------DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTA 353 (617)
Q Consensus 295 lV~~----s~-~l~--------h~~~-d-------~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~ 353 (617)
.|+. +. .++ .+.. + ..++|..+.++|||||.|+.++-.......+. .+..++++
T Consensus 232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~-----vV~~~L~~ 306 (355)
T COG0144 232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEE-----VVERFLER 306 (355)
T ss_pred EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHH-----HHHHHHHh
Confidence 9985 21 111 1110 0 13579999999999999999986554333222 25566655
Q ss_pred c-CceEEE
Q 039518 354 M-CWKLIA 360 (617)
Q Consensus 354 ~-gw~~v~ 360 (617)
. .|+.+.
T Consensus 307 ~~~~~~~~ 314 (355)
T COG0144 307 HPDFELEP 314 (355)
T ss_pred CCCceeec
Confidence 4 555443
No 255
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=96.69 E-value=0.0011 Score=67.96 Aligned_cols=98 Identities=7% Similarity=0.097 Sum_probs=57.0
Q ss_pred eeEEeccccccchhhhccC---CC-eEEEEeccCCCCchhHHHHhh----cccccccccCCCCCCCC-Cccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNS---LP-VWVMNIVPISMKNTLSAIYNR----GILGAFHDWCEPFSTYP-RTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~---~~-v~vmnv~p~~~~~~l~~~~~R----Glig~~~~~~~~f~typ-rtyDl~H~~~~~ 539 (617)
..|||+|||.|.++.+|.. .| .-++-|=+.. .-+..+-+| |+..-..-.+..+...| ..||+|-+...+
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~--~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l 135 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSP--AMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTL 135 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHH
Confidence 4699999999999877753 23 3233232221 333333332 33111111122233333 458887766555
Q ss_pred cccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 540 SHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
.+. ..-....++-||-|+|+|||.+++.|
T Consensus 136 ~~l----~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 136 QFL----EPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HhC----CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 532 22234579999999999999999986
No 256
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=96.69 E-value=0.0018 Score=64.28 Aligned_cols=151 Identities=16% Similarity=0.252 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHhc-cCCCCCeeeEEeccccccchhhhccCC--CeEEEEeccCCCCchhHHHHhh--cccc---cccccC
Q 039518 449 FWQDQVRHYWQLM-NVNETEIRNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMKNTLSAIYNR--GILG---AFHDWC 520 (617)
Q Consensus 449 ~w~~~v~~y~~~~-~~~~~~~Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~~~l~~~~~R--Glig---~~~~~~ 520 (617)
.|-++.++-.-++ .|...+|+++++.|||-|-|.+.|..+ .+.++-++| .-|..+-+| |+.. .-.|-.
T Consensus 24 ~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~----~Al~~Ar~Rl~~~~~V~~~~~dvp 99 (201)
T PF05401_consen 24 SWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISP----RALARARERLAGLPHVEWIQADVP 99 (201)
T ss_dssp -HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-H----HHHHHHHHHTTT-SSEEEEES-TT
T ss_pred CHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCH----HHHHHHHHhcCCCCCeEEEECcCC
Confidence 4555543323333 389999999999999999999999764 567765544 333333333 1211 111112
Q ss_pred CCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe---cCh-------HHHHHHHhhhhcCCce
Q 039518 521 EPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR---DEK-------SLITRIRDLAPKFLWD 590 (617)
Q Consensus 521 ~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~---d~~-------~~~~~~~~~~~~~~W~ 590 (617)
+..| +.+|||||.+-++--+ .+.=.+..++-.|...|+|||.+|+- |.. -=-+.|.+|+...-=+
T Consensus 100 ~~~P--~~~FDLIV~SEVlYYL---~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~ 174 (201)
T PF05401_consen 100 EFWP--EGRFDLIVLSEVLYYL---DDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTE 174 (201)
T ss_dssp T-----SS-EEEEEEES-GGGS---SSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEE
T ss_pred CCCC--CCCeeEEEEehHhHcC---CCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhh
Confidence 2222 3999999999887643 33334556788888999999999994 321 1123455555444444
Q ss_pred EEEeeccccCCCceeEEEE
Q 039518 591 VELHSLENREKKMESVLIC 609 (617)
Q Consensus 591 ~~~~~~e~~~~~~~~~l~~ 609 (617)
+.-..-. |....|.-|++
T Consensus 175 ~~~~~~~-~~~~~~~~~~~ 192 (201)
T PF05401_consen 175 VERVECR-GGSPNEDCLLA 192 (201)
T ss_dssp EEEEEEE--SSTTSEEEEE
T ss_pred eeEEEEc-CCCCCCceEee
Confidence 4433322 23334555554
No 257
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.69 E-value=0.0061 Score=66.18 Aligned_cols=93 Identities=19% Similarity=0.179 Sum_probs=62.5
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCC-C-CC-------------
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQL-P-YP------------- 289 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~L-p-f~------------- 289 (617)
.+|||++||+|.++..|++... .+.++|+++.+++.|+++ ++ ++.+..+|+.++ + +.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 3599999999999998877532 678889999999988875 44 467777776442 1 10
Q ss_pred -CCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 290 -SSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 290 -d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
...||+|+.---. ..-...++..+. +|++.++++..
T Consensus 285 ~~~~~D~v~lDPPR---~G~~~~~l~~l~---~~~~ivyvSC~ 321 (362)
T PRK05031 285 KSYNFSTIFVDPPR---AGLDDETLKLVQ---AYERILYISCN 321 (362)
T ss_pred cCCCCCEEEECCCC---CCCcHHHHHHHH---ccCCEEEEEeC
Confidence 2258999854211 111234444444 47899999874
No 258
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=96.68 E-value=0.0013 Score=57.08 Aligned_cols=89 Identities=18% Similarity=0.300 Sum_probs=44.3
Q ss_pred EeccccccchhhhccCC--CeEEEEeccCCCCchh----HHHHhhccc--ccc-cccCCCCCCCC-Cccchhhccccccc
Q 039518 472 MDMNAYCGGFAVALNSL--PVWVMNIVPISMKNTL----SAIYNRGIL--GAF-HDWCEPFSTYP-RTYDLLHANHLFSH 541 (617)
Q Consensus 472 mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~~~l----~~~~~RGli--g~~-~~~~~~f~typ-rtyDl~H~~~~~s~ 541 (617)
||+|||.|.+..+|.+. ..=+.-+=+.. +-+ +-+.+.+.- -.. .+--+.+...+ .+||+|.+.+++.+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~--~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISP--SMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSS--STTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 79999999999999766 33222222211 222 112222211 111 11112233333 59999999999986
Q ss_pred cccCCCCCChhhHHhhhhhcccCCceE
Q 039518 542 YKNRGEVCSLEDIMLEMDLIIRPQGFI 568 (617)
Q Consensus 542 ~~~~~~~c~~~~~l~e~dRilRP~G~~ 568 (617)
. =.+..+|-.+-++|+|||.+
T Consensus 79 l------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 L------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -------S-HHHHHHHHTTT-TSS-EE
T ss_pred h------hhHHHHHHHHHHHcCCCCCC
Confidence 4 35678999999999999985
No 259
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=96.66 E-value=0.0014 Score=67.81 Aligned_cols=96 Identities=16% Similarity=0.177 Sum_probs=57.4
Q ss_pred CCCCCeeeEEeccccccchhhhc---cCC--CeEEEEeccCCCC-chhHHHHhh----cccc--c-ccccCCCCCCCCCc
Q 039518 463 VNETEIRNAMDMNAYCGGFAVAL---NSL--PVWVMNIVPISMK-NTLSAIYNR----GILG--A-FHDWCEPFSTYPRT 529 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l---~~~--~v~vmnv~p~~~~-~~l~~~~~R----Glig--~-~~~~~~~f~typrt 529 (617)
+..+ .+|||+|||.|..+..+ ... .|..+ |.. +.+..+-++ |+-. . ..|. +.++.-..+
T Consensus 75 ~~~g--~~VLDiG~G~G~~~~~~a~~~g~~~~v~gv-----D~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l~~~~~~ 146 (272)
T PRK11873 75 LKPG--ETVLDLGSGGGFDCFLAARRVGPTGKVIGV-----DMTPEMLAKARANARKAGYTNVEFRLGEI-EALPVADNS 146 (272)
T ss_pred CCCC--CEEEEeCCCCCHHHHHHHHHhCCCCEEEEE-----CCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhCCCCCCc
Confidence 4555 49999999998754322 222 24333 322 445444443 3211 0 1122 222222379
Q ss_pred cchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 530 YDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 530 yDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
||+|+++.++.+. . ....++-|+=|+|||||.+++.|
T Consensus 147 fD~Vi~~~v~~~~---~---d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 147 VDVIISNCVINLS---P---DKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred eeEEEEcCcccCC---C---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999988777643 1 34578999999999999999964
No 260
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=96.66 E-value=0.0019 Score=64.34 Aligned_cols=122 Identities=11% Similarity=0.119 Sum_probs=68.8
Q ss_pred cccchhhHHHHHHHHHHhccCC--CCCeeeEEeccccccchhhhccCCCeEEEEeccCCCCchhHHHHhh----cc--cc
Q 039518 443 FTTDTSFWQDQVRHYWQLMNVN--ETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMKNTLSAIYNR----GI--LG 514 (617)
Q Consensus 443 f~~d~~~w~~~v~~y~~~~~~~--~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~~~l~~~~~R----Gl--ig 514 (617)
|....+.=..+++...+.+... ...--+|||+|||.|.++..+.+...=++-+-+.. ..+..+-++ |+ +-
T Consensus 19 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~--~~~~~a~~~~~~~~~~~~~ 96 (224)
T TIGR01983 19 FKPLHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASE--ENIEVAKLHAKKDPLLKIE 96 (224)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCH--HHHHHHHHHHHHcCCCceE
Confidence 4444444344555555544411 11234899999999999888765432232222211 233333222 22 11
Q ss_pred cccccCCCCC-CCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 515 AFHDWCEPFS-TYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 515 ~~~~~~~~f~-typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
..+.-.+.++ ..|.+||+|.+.+++.+. -....+|-++.++|+|||.+++.+
T Consensus 97 ~~~~d~~~~~~~~~~~~D~i~~~~~l~~~------~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 97 YRCTSVEDLAEKGAKSFDVVTCMEVLEHV------PDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred EEeCCHHHhhcCCCCCccEEEehhHHHhC------CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 1111111111 125789999988877643 245689999999999999999874
No 261
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.65 E-value=0.0071 Score=62.26 Aligned_cols=123 Identities=13% Similarity=0.125 Sum_probs=79.0
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh---------CCCcEEEEecCCCC-CCCCC-CeeEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER---------GIGAMISALSTKQL-PYPSS-SFEMV 296 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er---------g~~~~~~~~d~~~L-pf~d~-sFDlV 296 (617)
..++||=||.|.|..+..+++.. ....++.+|+++..++.|++. ..++.+...|.... .-..+ +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 34569999999999999998765 223788899999999999874 13467777775221 11223 89999
Q ss_pred Eeccccccccc----chHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCc
Q 039518 297 HCSRCRVDWHA----NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCW 356 (617)
Q Consensus 297 ~~s~~l~h~~~----d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw 356 (617)
+.-. ...... --..+++.+.+.|+|||.+++-...... .......+.+.+++.+.
T Consensus 155 i~D~-~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~----~~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 155 IVDL-TDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFL----HPELFKSILKTLRSVFP 213 (246)
T ss_dssp EEES-SSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTT----THHHHHHHHHHHHTTSS
T ss_pred EEeC-CCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCccc----chHHHHHHHHHHHHhCC
Confidence 9632 222211 1357899999999999999987532221 12223445555555554
No 262
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.64 E-value=0.0041 Score=64.02 Aligned_cols=136 Identities=17% Similarity=0.261 Sum_probs=75.7
Q ss_pred eeEEeccccccchhhhccCCC-eEEEEeccCCCC-chhHHHHhh---ccc----ccccccCCCCCCCCCccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLP-VWVMNIVPISMK-NTLSAIYNR---GIL----GAFHDWCEPFSTYPRTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~-v~vmnv~p~~~~-~~l~~~~~R---Gli----g~~~~~~~~f~typrtyDl~H~~~~~ 539 (617)
.+|+|+|||.|.++.+|...- -+ .++-.|.. ..+..+-++ +.. =+-.|+-+++. +.+||+|-++--+
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~--~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy 185 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDA--EVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPPY 185 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCCc
Confidence 479999999999998886431 11 22233333 344443332 221 12234444433 3789999765332
Q ss_pred ccccc-----------CC--------CCC-ChhhHHhhhhhcccCCceEEEecChHHHHHHHhhhhcCCce-EEEeeccc
Q 039518 540 SHYKN-----------RG--------EVC-SLEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWD-VELHSLEN 598 (617)
Q Consensus 540 s~~~~-----------~~--------~~c-~~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~~~W~-~~~~~~e~ 598 (617)
..... +. +.. .+..++-++-++|+|||++++--....-..++++.+...+. +....
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~--- 262 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRK--- 262 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEec---
Confidence 21000 00 000 02367778889999999999964444445677777665554 23221
Q ss_pred cCCCceeEEEEEe
Q 039518 599 REKKMESVLICRK 611 (617)
Q Consensus 599 ~~~~~~~~l~~~k 611 (617)
.-.+.+++++++|
T Consensus 263 d~~~~~r~~~~~~ 275 (275)
T PRK09328 263 DLAGRDRVVLGRR 275 (275)
T ss_pred CCCCCceEEEEEC
Confidence 2235688888765
No 263
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=96.63 E-value=0.003 Score=61.76 Aligned_cols=134 Identities=13% Similarity=0.220 Sum_probs=71.1
Q ss_pred CCCCCeeeEEeccccccchhhhccCC-----CeEEEEeccCCCCchhHHHHhhcccccccccCCCC------CCC-CCcc
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSL-----PVWVMNIVPISMKNTLSAIYNRGILGAFHDWCEPF------STY-PRTY 530 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~-----~v~vmnv~p~~~~~~l~~~~~RGlig~~~~~~~~f------~ty-prty 530 (617)
+..+ .+|||+|||.|+++.++..+ .|+..=+.|.. .+ .|+--+.+|..+.. ..+ +.+|
T Consensus 30 i~~g--~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-------~~-~~i~~~~~d~~~~~~~~~l~~~~~~~~~ 99 (188)
T TIGR00438 30 IKPG--DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-------PI-ENVDFIRGDFTDEEVLNKIRERVGDDKV 99 (188)
T ss_pred cCCC--CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-------cC-CCceEEEeeCCChhHHHHHHHHhCCCCc
Confidence 4444 48999999999997766432 36655444421 00 12222223444321 012 2578
Q ss_pred chhhccccc--c-cccc--CCCCCChhhHHhhhhhcccCCceEEEe-cC----hHHHHHHHhhhhcCCceEEEee-cccc
Q 039518 531 DLLHANHLF--S-HYKN--RGEVCSLEDIMLEMDLIIRPQGFIIIR-DE----KSLITRIRDLAPKFLWDVELHS-LENR 599 (617)
Q Consensus 531 Dl~H~~~~~--s-~~~~--~~~~c~~~~~l~e~dRilRP~G~~i~~-d~----~~~~~~~~~~~~~~~W~~~~~~-~e~~ 599 (617)
|+|=++... + .|.. ....+.++.+|-++-|+|+|||.+++- .. .+++.++++ .+ |++.+.. .-..
T Consensus 100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~---~~-~~~~~~~~~~~~ 175 (188)
T TIGR00438 100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK---LF-EKVKVTKPQASR 175 (188)
T ss_pred cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh---hh-ceEEEeCCCCCC
Confidence 887654321 1 1100 011123467899999999999999993 12 244444433 22 5555543 2223
Q ss_pred CCCceeEEEEE
Q 039518 600 EKKMESVLICR 610 (617)
Q Consensus 600 ~~~~~~~l~~~ 610 (617)
....|+.+||.
T Consensus 176 ~~~~~~~~~~~ 186 (188)
T TIGR00438 176 KRSAEVYIVAK 186 (188)
T ss_pred cccceEEEEEe
Confidence 34457888875
No 264
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.61 E-value=0.0053 Score=61.54 Aligned_cols=126 Identities=15% Similarity=0.179 Sum_probs=67.7
Q ss_pred eeEEeccccccchhhhccCC-----CeEEEEeccCCCCchhHHHHhhcccccccccCCC---------CCCCCCccchhh
Q 039518 469 RNAMDMNAYCGGFAVALNSL-----PVWVMNIVPISMKNTLSAIYNRGILGAFHDWCEP---------FSTYPRTYDLLH 534 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-----~v~vmnv~p~~~~~~l~~~~~RGlig~~~~~~~~---------f~typrtyDl~H 534 (617)
.+|||+|||.|+|...|.+. .|..+-+.|.... .|+.-+-.|.... +. +.+||+|-
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~--------~~v~~i~~D~~~~~~~~~i~~~~~--~~~~D~V~ 122 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPI--------VGVDFLQGDFRDELVLKALLERVG--DSKVQVVM 122 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCC--------CCcEEEecCCCChHHHHHHHHHhC--CCCCCEEe
Confidence 47999999999997766432 3444444442111 1222222232221 22 26788888
Q ss_pred ccccccccccCCCC--------CChhhHHhhhhhcccCCceEEEe-----cChHHHHHHHhhhhcCCceEEEeeccccCC
Q 039518 535 ANHLFSHYKNRGEV--------CSLEDIMLEMDLIIRPQGFIIIR-----DEKSLITRIRDLAPKFLWDVELHSLENREK 601 (617)
Q Consensus 535 ~~~~~s~~~~~~~~--------c~~~~~l~e~dRilRP~G~~i~~-----d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~ 601 (617)
++...... ... ...+.+|-|+=|+|+|||.+++. +..+.+.++++.-..... ..+...-..
T Consensus 123 S~~~~~~~---g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~---~Kp~ssr~~ 196 (209)
T PRK11188 123 SDMAPNMS---GTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKV---RKPDSSRAR 196 (209)
T ss_pred cCCCCccC---CChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEE---ECCcccccc
Confidence 65432210 111 11256899999999999999994 223444444443333222 223333334
Q ss_pred CceeEEEEE
Q 039518 602 KMESVLICR 610 (617)
Q Consensus 602 ~~~~~l~~~ 610 (617)
..|..+||.
T Consensus 197 s~e~~~~~~ 205 (209)
T PRK11188 197 SREVYIVAT 205 (209)
T ss_pred CceeEEEee
Confidence 557777775
No 265
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.60 E-value=0.0012 Score=64.11 Aligned_cols=96 Identities=20% Similarity=0.197 Sum_probs=53.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEec---------CCC-CCCCCCCeeEEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALS---------TKQ-LPYPSSSFEMVH 297 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d---------~~~-Lpf~d~sFDlV~ 297 (617)
.+.+|||+||++|.|+..+++++.....+.++|+.+.. ....+....+| +.. ++-..+.||+|+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD------PLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc------cccceeeeecccchhhHHHhhhhhccccccCcceec
Confidence 45789999999999999999987334466667766541 00111111111 111 111226899999
Q ss_pred ecccccccc----cch-------HHHHHHHHHhccCCeEEEEEe
Q 039518 298 CSRCRVDWH----AND-------GILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 298 ~s~~l~h~~----~d~-------~~~L~el~RvLrPGG~Liis~ 330 (617)
|-. ..... .+. ...+.-+...|+|||.+++-.
T Consensus 97 ~D~-~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 97 SDM-APNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp E--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred ccc-ccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 753 11111 111 224555667899999998865
No 266
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.59 E-value=0.011 Score=59.82 Aligned_cols=97 Identities=14% Similarity=0.092 Sum_probs=67.6
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecC-CCCC-----CCCCCeeEEE
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALST-KQLP-----YPSSSFEMVH 297 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~-~~Lp-----f~d~sFDlV~ 297 (617)
++.||||.=||.-+..++..-...-.+..+|++++..+.+.+. |+ .+.+.++.+ +.|+ ...++||+++
T Consensus 75 k~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaF 154 (237)
T KOG1663|consen 75 KRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAF 154 (237)
T ss_pred ceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEE
Confidence 4599999888876666655422223566778888888777543 43 355666543 2222 3568999998
Q ss_pred ecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 298 CSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 298 ~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+-+|-.+-..+..++.++||+||.+++-.
T Consensus 155 ----vDadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 155 ----VDADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred ----EccchHHHHHHHHHHHhhcccccEEEEec
Confidence 45666666789999999999999999853
No 267
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=96.58 E-value=0.0016 Score=65.60 Aligned_cols=95 Identities=12% Similarity=0.258 Sum_probs=61.2
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cccccc--cccCCCCCCCCCccchhhccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GILGAF--HDWCEPFSTYPRTYDLLHANHLFSH 541 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Glig~~--~~~~~~f~typrtyDl~H~~~~~s~ 541 (617)
..|||+|||.|.++..|.+... +++=.|.. +.+..+-++ |+-..+ .++.+-....+-+||+|.+..++.+
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 3599999999999988876643 33333433 444444433 331112 2222211112368999999888775
Q ss_pred cccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 542 YKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 542 ~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
. . ....+|-++.|+|+|||.+++..
T Consensus 127 ~---~---~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 127 V---P---DPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred c---C---CHHHHHHHHHHHcCCCcEEEEEe
Confidence 4 2 45678999999999999999974
No 268
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.57 E-value=0.0034 Score=66.00 Aligned_cols=101 Identities=16% Similarity=0.219 Sum_probs=68.2
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC---CcEEEEecCCC-CC--CCCCCeeEEEe
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI---GAMISALSTKQ-LP--YPSSSFEMVHC 298 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~---~~~~~~~d~~~-Lp--f~d~sFDlV~~ 298 (617)
+++|||+=|=||.|+.+.+..|.. .++.+|.|..+++.|+++ ++ .+.+...|+.+ +. -..+.||+|++
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~--~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAK--EVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTES--EEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCceEEecCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 457999999999999998877753 677789999999999886 43 35666666422 11 02468999997
Q ss_pred cc-----cccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 299 SR-----CRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 299 s~-----~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
-- .......+...++..+.++|+|||.++.+..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 31 1111123456789999999999999988764
No 269
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.55 E-value=0.0057 Score=63.33 Aligned_cols=70 Identities=16% Similarity=0.112 Sum_probs=56.4
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCCCCCCCCC-CeeEEEec
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---IGAMISALSTKQLPYPSS-SFEMVHCS 299 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~~Lpf~d~-sFDlV~~s 299 (617)
.++..|||||+|.|.++..|++++.. +++++++..+++..+++. .+..+..+|+-..++++- .++.|+++
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~~~---v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERAAR---VTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcCe---EEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCCEEEEc
Confidence 34567999999999999999999764 566788999988887773 457888889888887654 58888876
No 270
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=96.54 E-value=0.0026 Score=63.72 Aligned_cols=103 Identities=13% Similarity=0.163 Sum_probs=58.6
Q ss_pred HHHHHHhccCCCCCeeeEEeccccccchhhhccCC--C---eEEEEeccCCCCchhHHHHhhcc---cccccccCCCCCC
Q 039518 454 VRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSL--P---VWVMNIVPISMKNTLSAIYNRGI---LGAFHDWCEPFST 525 (617)
Q Consensus 454 v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~--~---v~vmnv~p~~~~~~l~~~~~RGl---ig~~~~~~~~f~t 525 (617)
++...+.+.+..+ ..|||+|||.|.+++.|.+. + |+.+-+.|.-....-..+-+.|+ .=+..|..+.++.
T Consensus 66 ~~~~~~~l~~~~~--~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~ 143 (215)
T TIGR00080 66 VAMMTELLELKPG--MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP 143 (215)
T ss_pred HHHHHHHhCCCCc--CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc
Confidence 3444455556655 47999999999999988643 2 44443332211111112223343 1122344443333
Q ss_pred CCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 526 YPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 526 yprtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
...||+|+++.... .+.-++-+.|+|||.+|+-
T Consensus 144 -~~~fD~Ii~~~~~~------------~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 144 -LAPYDRIYVTAAGP------------KIPEALIDQLKEGGILVMP 176 (215)
T ss_pred -cCCCCEEEEcCCcc------------cccHHHHHhcCcCcEEEEE
Confidence 25899999655433 2344566889999999984
No 271
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.53 E-value=0.0031 Score=63.85 Aligned_cols=120 Identities=17% Similarity=0.279 Sum_probs=70.8
Q ss_pred eeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHH----Hhhccc--cc-ccccCCCCCCCCCccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAI----YNRGIL--GA-FHDWCEPFSTYPRTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~----~~RGli--g~-~~~~~~~f~typrtyDl~H~~~~~ 539 (617)
.+|+|+|||.|.|+.++... |-. +++-.|.. ..+..+ -..|+- -+ ..|+-+.++ +..||+|-++--|
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy 164 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDA--RVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP--GGKFDLIVSNPPY 164 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc--CCceeEEEECCCC
Confidence 47999999999999988764 211 22223322 333222 223441 12 223333333 3789999876544
Q ss_pred ccccc---CCCCCC-----------------hhhHHhhhhhcccCCceEEEecChHHHHHHHhhhhcCCceEE
Q 039518 540 SHYKN---RGEVCS-----------------LEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVE 592 (617)
Q Consensus 540 s~~~~---~~~~c~-----------------~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~ 592 (617)
..... ...... ...++-++-|+|+|||.+++........+++++++...++..
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCce
Confidence 42100 000000 135677899999999999998666666778888877777643
No 272
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.52 E-value=0.013 Score=62.59 Aligned_cols=102 Identities=13% Similarity=0.091 Sum_probs=66.0
Q ss_pred CCCeEEEECCCCcHHHHHhccC----CCcEEEeeecCCcHHHHHHHHHhCC----C-cEE--EEecCCC----CCC--CC
Q 039518 228 GVFQVLDVGCGVASFSAFLLPL----DIQTMSFAPKDGHENQIQFALERGI----G-AMI--SALSTKQ----LPY--PS 290 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~----gv~~v~v~~iDis~~~lq~A~erg~----~-~~~--~~~d~~~----Lpf--~d 290 (617)
++..++|+|||.|.=+..|++. +. .+.+.|+|+|.++++.+.++-. + +.+ ..++..+ ++- ..
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~-~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKK-SVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCC-CceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 3446999999999766655442 22 2478899999999998877532 2 333 3444322 321 12
Q ss_pred CCeeEEEecc-cccccc-cchHHHHHHHHH-hccCCeEEEEEe
Q 039518 291 SSFEMVHCSR-CRVDWH-ANDGILLKEVDR-VLRPNGYFVYSA 330 (617)
Q Consensus 291 ~sFDlV~~s~-~l~h~~-~d~~~~L~el~R-vLrPGG~Liis~ 330 (617)
....+++.-. .+.++. ++...+|+++.+ .|+|||.|+|..
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 3456776543 333433 223468999999 999999999975
No 273
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.51 E-value=0.024 Score=57.22 Aligned_cols=121 Identities=15% Similarity=0.079 Sum_probs=78.4
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHH----HhCCC-cEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFAL----ERGIG-AMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~----erg~~-~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
+.+++|||+|.|.-+..|+=..... .++-+|....-+.+-+ +-+.+ +.+..+.++.+.-...-||+|+|- ++
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~-~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsR-Av- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDL-KVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSR-AV- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCC-cEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEee-hc-
Confidence 5689999999998888876332222 3666676655554433 33665 788888787775321119999864 33
Q ss_pred ccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 304 DWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 304 h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
.+...++.-+..+|++||.++..- .......+.+.+......++.+...
T Consensus 145 ---a~L~~l~e~~~pllk~~g~~~~~k------~~~~~~e~~e~~~a~~~~~~~~~~~ 193 (215)
T COG0357 145 ---ASLNVLLELCLPLLKVGGGFLAYK------GLAGKDELPEAEKAILPLGGQVEKV 193 (215)
T ss_pred ---cchHHHHHHHHHhcccCCcchhhh------HHhhhhhHHHHHHHHHhhcCcEEEE
Confidence 256678888899999999876421 0111122556777777788877763
No 274
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.48 E-value=0.0031 Score=63.21 Aligned_cols=99 Identities=14% Similarity=0.153 Sum_probs=55.4
Q ss_pred HHHHHhccCCCCCeeeEEeccccccchhhhccCC-----CeEEEEeccCCCCchhHHHHh----hcccccccccCCCCCC
Q 039518 455 RHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSL-----PVWVMNIVPISMKNTLSAIYN----RGILGAFHDWCEPFST 525 (617)
Q Consensus 455 ~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~-----~v~vmnv~p~~~~~~l~~~~~----RGlig~~~~~~~~f~t 525 (617)
......+.+..+ .+|||+|||+|.+++.|... .|..+-+.| +-+..+-+ -|+-.+---....+..
T Consensus 66 ~~~~~~l~~~~g--~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~----~~~~~a~~~l~~~g~~~v~~~~gd~~~~ 139 (212)
T PRK13942 66 AIMCELLDLKEG--MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIP----ELAEKAKKTLKKLGYDNVEVIVGDGTLG 139 (212)
T ss_pred HHHHHHcCCCCc--CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCH----HHHHHHHHHHHHcCCCCeEEEECCcccC
Confidence 333444456665 58999999999999776432 344443322 22222222 2331111111222333
Q ss_pred CC--CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 526 YP--RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 526 yp--rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
+| ..||.|++...+. .+.-++-+.|+|||.+++-
T Consensus 140 ~~~~~~fD~I~~~~~~~------------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 140 YEENAPYDRIYVTAAGP------------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCcCCCcCEEEECCCcc------------cchHHHHHhhCCCcEEEEE
Confidence 33 6899998655443 2344566689999999884
No 275
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.48 E-value=0.027 Score=60.68 Aligned_cols=122 Identities=11% Similarity=0.040 Sum_probs=88.8
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
+|.+|||+=+|.|.|+..++..+.. .+.++|+++.+++..+++ ++. +....+|...++..-+.||-|+...
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~- 264 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL- 264 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC-
Confidence 3567999999999999999998764 377889999999888775 332 5567788877765558899999653
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceE
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKL 358 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~ 358 (617)
+.+-..++..+.+.|++||.+.+-.........+ .....+...+...|.+.
T Consensus 265 ----p~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~--~~~~~i~~~~~~~~~~~ 315 (341)
T COG2520 265 ----PKSAHEFLPLALELLKDGGIIHYYEFVPEDDIEE--RPEKRIKSAARKGGYKV 315 (341)
T ss_pred ----CCcchhhHHHHHHHhhcCcEEEEEeccchhhccc--chHHHHHHHHhhccCcc
Confidence 3345678899999999999998865322211111 13456788888887643
No 276
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.48 E-value=0.0039 Score=58.98 Aligned_cols=71 Identities=13% Similarity=0.091 Sum_probs=54.2
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.|++++|+|||.|-+.....-.+. -.+.+.|+.+.+++.+..+ .+++.+.++++.++.+..+.||.++.+.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~--e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKN--ESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCC--ceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecC
Confidence 456799999999987744433333 3677889999999988765 4556778888888877788999999764
No 277
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.47 E-value=0.013 Score=60.80 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=53.3
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh--CCC----cEEEEecCCCCCCCCCCeeEEEe
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER--GIG----AMISALSTKQLPYPSSSFEMVHC 298 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er--g~~----~~~~~~d~~~Lpf~d~sFDlV~~ 298 (617)
.+.++..|||||.|||.++..|++.+..++ ++++++.|+....+| |.+ ..+..+|.-..++| .||.+++
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~kkVv---A~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVs 129 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAGKKVV---AVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVS 129 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCeEE---EEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeec
Confidence 456777899999999999999999987554 457888998888777 333 45666776555443 5999997
Q ss_pred c
Q 039518 299 S 299 (617)
Q Consensus 299 s 299 (617)
+
T Consensus 130 N 130 (315)
T KOG0820|consen 130 N 130 (315)
T ss_pred c
Confidence 5
No 278
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.47 E-value=0.0063 Score=66.39 Aligned_cols=94 Identities=6% Similarity=0.111 Sum_probs=71.2
Q ss_pred CeEEEECCCCcHHHHHhccC--CCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCC-CCCCCeeEEEeccc
Q 039518 230 FQVLDVGCGVASFSAFLLPL--DIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLP-YPSSSFEMVHCSRC 301 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~--gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lp-f~d~sFDlV~~s~~ 301 (617)
.+|||+.||+|..+..++.+ ++. .+..+|+++.+++.++++ +. ++.+...|+..+- ...+.||+|..-
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~--~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlD-- 121 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVR--EVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDID-- 121 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeC--
Confidence 46999999999999999987 443 678899999999988765 33 2456666654332 123579999843
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
++. .+..++..+.+.+++||.+.++.
T Consensus 122 --PfG-s~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 122 --PFG-TPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred --CCC-CcHHHHHHHHHhcccCCEEEEEe
Confidence 332 56789999999999999999984
No 279
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=96.47 E-value=0.0035 Score=65.08 Aligned_cols=133 Identities=13% Similarity=0.215 Sum_probs=81.0
Q ss_pred cCccccccchhhHHHHHHHHHHhc-c-CCCCCeeeEEeccccccc----hhhhccCC----CeEEEEeccCCCC-chhHH
Q 039518 438 ITQEEFTTDTSFWQDQVRHYWQLM-N-VNETEIRNAMDMNAYCGG----FAVALNSL----PVWVMNIVPISMK-NTLSA 506 (617)
Q Consensus 438 ~~~~~f~~d~~~w~~~v~~y~~~~-~-~~~~~~Rn~mDm~~~~g~----faa~l~~~----~v~vmnv~p~~~~-~~l~~ 506 (617)
++...|-.|...|..-.+.....+ . ...+.--.|+|+|||.|- .|-.|.+. +-|...|.-+|-. .-|..
T Consensus 68 i~~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~ 147 (264)
T smart00138 68 TNETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEK 147 (264)
T ss_pred cCCCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHH
Confidence 455678888899988776655433 2 222333579999999994 55545331 1234456656655 44433
Q ss_pred HHhhccc-----------------------------------ccccccCCCCCCCCCccchhhccccccccccCCCCCCh
Q 039518 507 IYNRGIL-----------------------------------GAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSL 551 (617)
Q Consensus 507 ~~~RGli-----------------------------------g~~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~ 551 (617)
+- +|.- =..||-.+.-+ -+..||+|.|..+|..+ +.=..
T Consensus 148 Ar-~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~-~~~~fD~I~crnvl~yf----~~~~~ 221 (264)
T smart00138 148 AR-AGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP-PLGDFDLIFCRNVLIYF----DEPTQ 221 (264)
T ss_pred HH-cCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC-ccCCCCEEEechhHHhC----CHHHH
Confidence 32 2210 01234443221 13799999988887654 11123
Q ss_pred hhHHhhhhhcccCCceEEEecChHH
Q 039518 552 EDIMLEMDLIIRPQGFIIIRDEKSL 576 (617)
Q Consensus 552 ~~~l~e~dRilRP~G~~i~~d~~~~ 576 (617)
..++-++-|+|+|||++++-....+
T Consensus 222 ~~~l~~l~~~L~pGG~L~lg~~E~~ 246 (264)
T smart00138 222 RKLLNRFAEALKPGGYLFLGHSESL 246 (264)
T ss_pred HHHHHHHHHHhCCCeEEEEECcccC
Confidence 4699999999999999999866543
No 280
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=96.45 E-value=0.0031 Score=62.23 Aligned_cols=120 Identities=11% Similarity=0.132 Sum_probs=67.2
Q ss_pred eeEEeccccccchhhhccCC--CeEEEEeccCCCCchhHH----HHhhcccccccccCCCC--C--CCC-Cccchhhccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMKNTLSA----IYNRGILGAFHDWCEPF--S--TYP-RTYDLLHANH 537 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~~~l~~----~~~RGlig~~~~~~~~f--~--typ-rtyDl~H~~~ 537 (617)
+.|||+|||.|.|+.+|..+ ..-+..|-+.. .-+.. +-+.|+-.+-.-.+... + .+| .++|.|+.+.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~--~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHT--PIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeH--HHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 57999999999999888643 22222222222 22222 22334421111112211 1 144 4899887542
Q ss_pred cccccc---cCCCCCChhhHHhhhhhcccCCceEEEe-cChHHHHHHHhhhh-cCCceE
Q 039518 538 LFSHYK---NRGEVCSLEDIMLEMDLIIRPQGFIIIR-DEKSLITRIRDLAP-KFLWDV 591 (617)
Q Consensus 538 ~~s~~~---~~~~~c~~~~~l~e~dRilRP~G~~i~~-d~~~~~~~~~~~~~-~~~W~~ 591 (617)
-. .|. ..+.|...+.+|-|+=|+|+|||.+++. |..+..+.+.+.+. .-+|+.
T Consensus 96 pd-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 96 PD-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred CC-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 11 121 1235666778999999999999999987 55555555555443 333554
No 281
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.45 E-value=0.02 Score=57.90 Aligned_cols=143 Identities=11% Similarity=0.104 Sum_probs=82.7
Q ss_pred HHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcH----HHHHHHHHhCCCcEEEEecCCCCC
Q 039518 213 LGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHE----NQIQFALERGIGAMISALSTKQLP 287 (617)
Q Consensus 213 L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~----~~lq~A~erg~~~~~~~~d~~~Lp 287 (617)
|...+-..-..+.+.+|.+||-+|+.+|....++++- +... .+.+++.++ ..+..|++|. ++.-...|+. .|
T Consensus 58 LaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G-~VYaVEfs~r~~rdL~~la~~R~-NIiPIl~DAr-~P 134 (229)
T PF01269_consen 58 LAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDG-VVYAVEFSPRSMRDLLNLAKKRP-NIIPILEDAR-HP 134 (229)
T ss_dssp HHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTS-EEEEEESSHHHHHHHHHHHHHST-TEEEEES-TT-SG
T ss_pred HHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCC-cEEEEEecchhHHHHHHHhccCC-ceeeeeccCC-Ch
Confidence 4444433334577889999999999999888887764 2222 456667777 5566666664 3444455543 22
Q ss_pred ----CCCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCC-CCChhhHHHHHHHHHHcCceEEEE
Q 039518 288 ----YPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKD-KDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 288 ----f~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~-~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
.--+.+|+|++- +. -++....++.++...||+||.++++........ .+....+..-.+.++..+|+.+..
T Consensus 135 ~~Y~~lv~~VDvI~~D-Va--Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~ 210 (229)
T PF01269_consen 135 EKYRMLVEMVDVIFQD-VA--QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQ 210 (229)
T ss_dssp GGGTTTS--EEEEEEE--S--STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHhhcccccccEEEec-CC--ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheE
Confidence 112479999964 22 233456788899999999999999863211111 122233555555566678888763
No 282
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.42 E-value=0.0049 Score=61.40 Aligned_cols=101 Identities=15% Similarity=0.146 Sum_probs=58.2
Q ss_pred HHHHhccCCCCCeeeEEeccccccchhhhccC-----CCeEEEEeccCCCCchhHHHHhhcccc---cc-cccCCCCCCC
Q 039518 456 HYWQLMNVNETEIRNAMDMNAYCGGFAVALNS-----LPVWVMNIVPISMKNTLSAIYNRGILG---AF-HDWCEPFSTY 526 (617)
Q Consensus 456 ~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~-----~~v~vmnv~p~~~~~~l~~~~~RGlig---~~-~~~~~~f~ty 526 (617)
...+.+.+..+ ..|||+|||.|.+++.|.. ..|..+-+.|.-....-+-+...|+-. ++ .|-.+.++.
T Consensus 63 ~~~~~l~~~~~--~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~- 139 (205)
T PRK13944 63 MMCELIEPRPG--MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK- 139 (205)
T ss_pred HHHHhcCCCCC--CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-
Confidence 34444555555 4699999999999877643 234444433322111111223345422 22 244443332
Q ss_pred CCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 527 PRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 527 prtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
..+||.|.++..+.. +.=|+-|+|+|||.+++-
T Consensus 140 ~~~fD~Ii~~~~~~~------------~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 140 HAPFDAIIVTAAAST------------IPSALVRQLKDGGVLVIP 172 (205)
T ss_pred CCCccEEEEccCcch------------hhHHHHHhcCcCcEEEEE
Confidence 368999997665542 223677999999999985
No 283
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=96.40 E-value=0.0033 Score=59.16 Aligned_cols=97 Identities=14% Similarity=0.306 Sum_probs=63.0
Q ss_pred eeEEeccccccchhhhccC---CCeEEEEeccCCCCchhHHHHh----hccc--c-cccccCCCCCC-CCCccchhhccc
Q 039518 469 RNAMDMNAYCGGFAVALNS---LPVWVMNIVPISMKNTLSAIYN----RGIL--G-AFHDWCEPFST-YPRTYDLLHANH 537 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~---~~v~vmnv~p~~~~~~l~~~~~----RGli--g-~~~~~~~~f~t-yprtyDl~H~~~ 537 (617)
-+|||+|||.|-++=.|.+ .+.=++.|--.. ..++.+-+ .|+- = ...|+-+ ++. |+..||+|.+.+
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~--~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGVDISE--EMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISNG 81 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSH--HHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEES
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcH--HHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEcC
Confidence 4799999999999888872 234444443322 34444433 3442 1 1233333 332 458999999998
Q ss_pred cccccccCCCCCChhhHHhhhhhcccCCceEEEecCh
Q 039518 538 LFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK 574 (617)
Q Consensus 538 ~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~ 574 (617)
++... .....+|-+|=|.|+|+|.+++.+..
T Consensus 82 ~l~~~------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHF------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGT------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhc------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 88533 34457899999999999999998765
No 284
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.40 E-value=0.0033 Score=52.41 Aligned_cols=95 Identities=18% Similarity=0.289 Sum_probs=56.2
Q ss_pred eEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHH---hhcc---cccc-cccCCCCCCCCCccchhhccccccc
Q 039518 470 NAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIY---NRGI---LGAF-HDWCEPFSTYPRTYDLLHANHLFSH 541 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~---~RGl---ig~~-~~~~~~f~typrtyDl~H~~~~~s~ 541 (617)
+++|+|||.|++...+...+.. ++.-.|.. +.+..+- +.+. +-.+ .|+.+.-..-+..||++.++..+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGA--RVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCC--EEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 4899999999999888763221 22222322 2222222 1221 1112 1222221112478999998888873
Q ss_pred cccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 542 YKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 542 ~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
+ .=....++-.+.+.|||||++++.
T Consensus 79 ~-----~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L-----VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h-----hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 1 113457888889999999999986
No 285
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.39 E-value=0.018 Score=64.02 Aligned_cols=129 Identities=22% Similarity=0.197 Sum_probs=82.8
Q ss_pred eecCCCCCcccCChhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh
Q 039518 193 WWFPGGGTHFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER 272 (617)
Q Consensus 193 ~~Fpgggt~F~~~a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er 272 (617)
..|+-..+.|-+......+.+.+..-. .+...++.++||+=||.|.|+..|+++.. .+.++|+++++++.|+++
T Consensus 261 ~~~~~~~~sF~Q~N~~~~ekl~~~a~~---~~~~~~~~~vlDlYCGvG~f~l~lA~~~~---~V~gvEi~~~aV~~A~~N 334 (432)
T COG2265 261 VSFQISPRSFFQVNPAVAEKLYETALE---WLELAGGERVLDLYCGVGTFGLPLAKRVK---KVHGVEISPEAVEAAQEN 334 (432)
T ss_pred eEEEeCCCCceecCHHHHHHHHHHHHH---HHhhcCCCEEEEeccCCChhhhhhcccCC---EEEEEecCHHHHHHHHHH
Confidence 333334446766665555544444322 22234667899999999999999997654 667779999999888765
Q ss_pred ----CC-CcEEEEecCCCCCCC---CCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 273 ----GI-GAMISALSTKQLPYP---SSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 273 ----g~-~~~~~~~d~~~Lpf~---d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
++ ++.+..++++++... ...||.|+.---.-. -...+++.+. -++|-..+++|..
T Consensus 335 A~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G---~~~~~lk~l~-~~~p~~IvYVSCN 397 (432)
T COG2265 335 AAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAG---ADREVLKQLA-KLKPKRIVYVSCN 397 (432)
T ss_pred HHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCCCCC---CCHHHHHHHH-hcCCCcEEEEeCC
Confidence 44 478888887776532 357899984321100 1123444444 4578889999874
No 286
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=96.37 E-value=0.0021 Score=63.83 Aligned_cols=95 Identities=19% Similarity=0.279 Sum_probs=65.1
Q ss_pred eEEeccccccchhhhccCCCeEEEEeccCCCC-chh-HHHHhhcccccccccCCCCCC--CCCccchhhccccccccccC
Q 039518 470 NAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTL-SAIYNRGILGAFHDWCEPFST--YPRTYDLLHANHLFSHYKNR 545 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l-~~~~~RGlig~~~~~~~~f~t--yprtyDl~H~~~~~s~~~~~ 545 (617)
.|||+|||-|--|-+|.++..=|..|=-.... +.+ .++-++||- ++.++.-+.+ +|..||+|-+..+|- |
T Consensus 33 ~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~-f--- 106 (192)
T PF03848_consen 33 KALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTVVFM-F--- 106 (192)
T ss_dssp EEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEESSGG-G---
T ss_pred cEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEEEec-c---
Confidence 78999999999999999888766655444443 333 344556764 3333333332 568999998876775 3
Q ss_pred CCCCChhhHHhhhhhcccCCceEEE
Q 039518 546 GEVCSLEDIMLEMDLIIRPQGFIII 570 (617)
Q Consensus 546 ~~~c~~~~~l~e~dRilRP~G~~i~ 570 (617)
.++=.+..|+--|-.-++||||+++
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEE
Confidence 5566778899999999999999988
No 287
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.36 E-value=0.013 Score=58.19 Aligned_cols=97 Identities=13% Similarity=0.102 Sum_probs=62.1
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHH----HhCCCcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFAL----ERGIGAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~----erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
-.|++|||+|+|+|..+..-+..|.. .+...|+.+...+... .+|+.+.+...|.-. .+..||+|+.+.++
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~--~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlf 152 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAA--EVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLF 152 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhH--HHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeecee
Confidence 45788999999999988877776654 4455566666654433 335555555544322 56789999998766
Q ss_pred cccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 303 VDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 303 ~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.... .-..++. ..+.|+..|.-++..
T Consensus 153 y~~~-~a~~l~~-~~~~l~~~g~~vlvg 178 (218)
T COG3897 153 YNHT-EADRLIP-WKDRLAEAGAAVLVG 178 (218)
T ss_pred cCch-HHHHHHH-HHHHHHhCCCEEEEe
Confidence 5433 3455666 555555555555544
No 288
>PRK06922 hypothetical protein; Provisional
Probab=96.34 E-value=0.0016 Score=75.00 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=59.7
Q ss_pred eeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhh----cc-cccccccCCCCCC-C-CCccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNR----GI-LGAFHDWCEPFST-Y-PRTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~R----Gl-ig~~~~~~~~f~t-y-prtyDl~H~~~~~ 539 (617)
.+|||+|||.|.++.+|... |- .+|+-.|-. +.+..+-++ |. +-+++.=+..++. + |.+||+|.++.++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~--~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETED--KRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 48999999999998777532 11 122333433 344444333 21 1111111222332 3 4899999877655
Q ss_pred cccc---c-CC---CCCChhhHHhhhhhcccCCceEEEecC
Q 039518 540 SHYK---N-RG---EVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 540 s~~~---~-~~---~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
-.+- . .. +.-.+..+|-|+-|+|+|||.+++.|.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 4220 0 01 112456889999999999999999873
No 289
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.32 E-value=0.022 Score=58.02 Aligned_cols=127 Identities=15% Similarity=0.220 Sum_probs=87.6
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEE-ecCCCCC---CCCCCeeEEEeccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISA-LSTKQLP---YPSSSFEMVHCSRCRV 303 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~-~d~~~Lp---f~d~sFDlV~~s~~l~ 303 (617)
.+..+||+|+.||.|+..++++|.. .+.++|..-.++..-.+....+.... .++..+. +. +..|+|+|--.+
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvSF- 154 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDVSF- 154 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEeeh-
Confidence 4556999999999999999999876 67888999888877776665544332 2333332 22 367899975433
Q ss_pred ccccchHHHHHHHHHhccCCeEEEEEeCCCCCC------------CC-CChhhHHHHHHHHHHcCceEEEE
Q 039518 304 DWHANDGILLKEVDRVLRPNGYFVYSAPPAYRK------------DK-DYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 304 h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~------------~~-~~~~~W~~le~La~~~gw~~v~~ 361 (617)
. .....|-.+..+|+|+|.++.-.-|-..- ++ .+...-..+.+.+...||.....
T Consensus 155 --I-SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl 222 (245)
T COG1189 155 --I-SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGL 222 (245)
T ss_pred --h-hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeee
Confidence 3 46689999999999999888764332111 11 12223445888888999998763
No 290
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.19 E-value=0.024 Score=56.03 Aligned_cols=102 Identities=14% Similarity=0.094 Sum_probs=67.5
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----C--CCcEEEEecCCCC-CCCCC--CeeEEEe
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----G--IGAMISALSTKQL-PYPSS--SFEMVHC 298 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g--~~~~~~~~d~~~L-pf~d~--sFDlV~~ 298 (617)
.|.++||+=+|+|.++...++||.. .++.+|.+...++..+++ + ..+.+...|+... +-... +||+|+.
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~--~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAA--RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCc--eEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 4567999999999999999999876 456678888888888776 3 3455555565422 21222 4999996
Q ss_pred cccccccccchHHHHHH--HHHhccCCeEEEEEeC
Q 039518 299 SRCRVDWHANDGILLKE--VDRVLRPNGYFVYSAP 331 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~e--l~RvLrPGG~Liis~p 331 (617)
---...-.-+....+.. -...|+|+|.+++...
T Consensus 121 DPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 121 DPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 43211000112333333 5677999999999764
No 291
>PRK14967 putative methyltransferase; Provisional
Probab=96.17 E-value=0.0094 Score=60.01 Aligned_cols=126 Identities=16% Similarity=0.227 Sum_probs=67.8
Q ss_pred cCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hcc--cccccccCCCCCCCCCccchhh
Q 039518 462 NVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RGI--LGAFHDWCEPFSTYPRTYDLLH 534 (617)
Q Consensus 462 ~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RGl--ig~~~~~~~~f~typrtyDl~H 534 (617)
++..+ -.|||+|||.|.++..+...+.- +|+-.|-. ..+..+-+ .|+ --+-.|+.+.++ +..||+|.
T Consensus 33 ~~~~~--~~vLDlGcG~G~~~~~la~~~~~--~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi 106 (223)
T PRK14967 33 GLGPG--RRVLDLCTGSGALAVAAAAAGAG--SVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--FRPFDVVV 106 (223)
T ss_pred ccCCC--CeEEEecCCHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--CCCeeEEE
Confidence 34444 47999999999998877654320 22222322 33333222 243 112235555443 26899999
Q ss_pred cccccccc--------------ccCC-CCCChhhHHhhhhhcccCCceEEEe-cChHHHHHHHhhhhcCCceEEE
Q 039518 535 ANHLFSHY--------------KNRG-EVCSLEDIMLEMDLIIRPQGFIIIR-DEKSLITRIRDLAPKFLWDVEL 593 (617)
Q Consensus 535 ~~~~~s~~--------------~~~~-~~c~~~~~l~e~dRilRP~G~~i~~-d~~~~~~~~~~~~~~~~W~~~~ 593 (617)
++--|..- .... ....++.++-++-|+|+|||.+++- .......++.+++++-.|+...
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 181 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEV 181 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEE
Confidence 87433210 0000 0112456778899999999999983 2211233444445544555444
No 292
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.17 E-value=0.0034 Score=63.95 Aligned_cols=114 Identities=14% Similarity=0.087 Sum_probs=76.3
Q ss_pred CCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhcccccccccCCCCC--------CCCCccchhhcc
Q 039518 466 TEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGILGAFHDWCEPFS--------TYPRTYDLLHAN 536 (617)
Q Consensus 466 ~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGlig~~~~~~~~f~--------typrtyDl~H~~ 536 (617)
..-|.+.|+|||.| +||..+..= -=+|+-+|-. .+|+++ .-+.--+||+=--.++ .=+.+-|||-|.
T Consensus 32 ~~h~~a~DvG~G~G-qa~~~iae~--~k~VIatD~s~~mL~~a-~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNG-QAARGIAEH--YKEVIATDVSEAMLKVA-KKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred CCcceEEEeccCCC-cchHHHHHh--hhhheeecCCHHHHHHh-hcCCCcccccCCccccccccccccCCCcceeeehhh
Confidence 34569999999999 777664211 2245556666 788744 4445555554444443 236899999988
Q ss_pred ccccccccCCCCCChhhHHhhhhhcccCCc----eEEEecChHHHHHHHhhhhcCCce
Q 039518 537 HLFSHYKNRGEVCSLEDIMLEMDLIIRPQG----FIIIRDEKSLITRIRDLAPKFLWD 590 (617)
Q Consensus 537 ~~~s~~~~~~~~c~~~~~l~e~dRilRP~G----~~i~~d~~~~~~~~~~~~~~~~W~ 590 (617)
.++- | |+++..+-|+-|||||.| .|..+|+.-++-++-++..+++|+
T Consensus 108 qa~H-W------Fdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 108 QAVH-W------FDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hhHH-h------hchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 7764 5 888999999999999999 223355555555666666666664
No 293
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=96.16 E-value=0.0086 Score=61.77 Aligned_cols=129 Identities=12% Similarity=0.092 Sum_probs=76.5
Q ss_pred eeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHh----hcccccccccCCCCCC-CCCccchhhccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYN----RGILGAFHDWCEPFST-YPRTYDLLHANHLFSH 541 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~----RGlig~~~~~~~~f~t-yprtyDl~H~~~~~s~ 541 (617)
.+|+|+|||.|.++-+|... +-. +|+-.|.. ..+..+-+ .|+--+-.|+.+.++. ....||+|=++--+..
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~--~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGI--ELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 47999999999998877532 211 22223333 34433322 2321133455444432 2346888876543321
Q ss_pred cc------c----CCCCCC----------hhhHHhhhhhcccCCceEEEecChHHHHHHHhhhhcCCceEEEeecccc
Q 039518 542 YK------N----RGEVCS----------LEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELHSLENR 599 (617)
Q Consensus 542 ~~------~----~~~~c~----------~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~ 599 (617)
.. . ...+.. +..++-...++|+|||.+++--..+...++..+++...|+..+..+++.
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEcccc
Confidence 00 0 000111 2377788899999999999975556677888888888898888887664
No 294
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.07 E-value=0.032 Score=56.11 Aligned_cols=111 Identities=18% Similarity=0.266 Sum_probs=75.3
Q ss_pred HHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC----CcEEEEecC
Q 039518 208 EYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI----GAMISALST 283 (617)
Q Consensus 208 ~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~----~~~~~~~d~ 283 (617)
.|.+.+++.+.. .|+|||.||-|-|.....+.++.+.-- .-++.++..++.-++.|- ++.+..+-=
T Consensus 89 piMha~A~ai~t--------kggrvLnVGFGMgIidT~iQe~~p~~H--~IiE~hp~V~krmr~~gw~ek~nViil~g~W 158 (271)
T KOG1709|consen 89 PIMHALAEAIST--------KGGRVLNVGFGMGIIDTFIQEAPPDEH--WIIEAHPDVLKRMRDWGWREKENVIILEGRW 158 (271)
T ss_pred HHHHHHHHHHhh--------CCceEEEeccchHHHHHHHhhcCCcce--EEEecCHHHHHHHHhcccccccceEEEecch
Confidence 455556655543 455699999999999888877755422 235778888888887653 233333321
Q ss_pred CC-CC-CCCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEE
Q 039518 284 KQ-LP-YPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 284 ~~-Lp-f~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis 329 (617)
++ ++ ++++.||-|+-- ..-...+|...+.+-+.|+|||+|.+-.-
T Consensus 159 eDvl~~L~d~~FDGI~yD-Ty~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 159 EDVLNTLPDKHFDGIYYD-TYSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred HhhhccccccCcceeEee-chhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 21 22 568899999854 33233457788899999999999999874
No 295
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=96.07 E-value=0.007 Score=66.20 Aligned_cols=119 Identities=14% Similarity=0.139 Sum_probs=70.6
Q ss_pred eeEEeccccccchhhhccCC----CeEEEEeccCCCCchhHHHHhhcccc---cccccC---CCCCCCCCccchhhcccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL----PVWVMNIVPISMKNTLSAIYNRGILG---AFHDWC---EPFSTYPRTYDLLHANHL 538 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~----~v~vmnv~p~~~~~~l~~~~~RGlig---~~~~~~---~~f~typrtyDl~H~~~~ 538 (617)
..++|+|||.|.|..+|... .++-+=+-+......+.-+.++||-- +..|-- +.|+ +.++|.|+..
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~--~~s~D~I~ln-- 199 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP--SNSVEKIFVH-- 199 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC--CCceeEEEEe--
Confidence 47999999999999988643 34444333222222334455666521 223332 2343 3899999854
Q ss_pred cc-ccccCCCC-CChhhHHhhhhhcccCCceEEEe-cChHHHHHHHhhhhcC-CceE
Q 039518 539 FS-HYKNRGEV-CSLEDIMLEMDLIIRPQGFIIIR-DEKSLITRIRDLAPKF-LWDV 591 (617)
Q Consensus 539 ~s-~~~~~~~~-c~~~~~l~e~dRilRP~G~~i~~-d~~~~~~~~~~~~~~~-~W~~ 591 (617)
|. -|....+| =-....|-|+=|+|+|||.+.++ |..+..+.+.+..... +++.
T Consensus 200 FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 200 FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 32 23211222 12258999999999999999996 6666666655554333 4544
No 296
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.04 E-value=0.02 Score=67.52 Aligned_cols=121 Identities=15% Similarity=0.161 Sum_probs=69.6
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hccc-c----cccccCCCCCCCCCccchhhcccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RGIL-G----AFHDWCEPFSTYPRTYDLLHANHL 538 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RGli-g----~~~~~~~~f~typrtyDl~H~~~~ 538 (617)
++|||++||+|+|+-++.....- .|+-+|.. .-+..+-+ -|+- . +-.|..+.+....++||+|=++-=
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 68999999999999988766432 23333443 33332222 2331 0 112322222223578999865521
Q ss_pred -ccccccCCCCC--------ChhhHHhhhhhcccCCceEEEecChHHHHHHHhhhhcCCceEEEee
Q 039518 539 -FSHYKNRGEVC--------SLEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELHS 595 (617)
Q Consensus 539 -~s~~~~~~~~c--------~~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~ 595 (617)
|+. .... ....++-..=|+|+|||.+++.....-+....+.+..-.+++++..
T Consensus 618 ~f~~----~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 618 TFSN----SKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEIT 679 (702)
T ss_pred CCCC----CCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEe
Confidence 110 0000 1346777778999999999997555545555666666677777664
No 297
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=96.00 E-value=0.0061 Score=60.84 Aligned_cols=93 Identities=17% Similarity=0.272 Sum_probs=55.7
Q ss_pred eeEEeccccccchhhhccC-----CCeEEEEeccCCCCchhHHHHhh----cc---cccc-cccCCCCCCCCCccchhhc
Q 039518 469 RNAMDMNAYCGGFAVALNS-----LPVWVMNIVPISMKNTLSAIYNR----GI---LGAF-HDWCEPFSTYPRTYDLLHA 535 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~-----~~v~vmnv~p~~~~~~l~~~~~R----Gl---ig~~-~~~~~~f~typrtyDl~H~ 535 (617)
..|||+|||.|.++..+.. ..|..+-+.| +.+..+-++ ++ +-+. .|..+ ++.=+.+||+|.+
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~----~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~I~~ 127 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSE----GMLAVGREKLRDLGLSGNVEFVQGDAEA-LPFPDNSFDAVTI 127 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCH----HHHHHHHHhhcccccccCeEEEeccccc-CCCCCCCccEEEE
Confidence 4699999999999877643 2333332221 333333222 11 1111 12211 2211368999987
Q ss_pred cccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 536 NHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 536 ~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
..++.. ......+|-++-++|+|||.+++.+
T Consensus 128 ~~~l~~------~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 128 AFGLRN------VPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred eccccc------CCCHHHHHHHHHHhccCCcEEEEEE
Confidence 665543 3457788999999999999999853
No 298
>PRK06202 hypothetical protein; Provisional
Probab=95.96 E-value=0.011 Score=59.83 Aligned_cols=101 Identities=12% Similarity=0.228 Sum_probs=62.4
Q ss_pred CCeeeEEeccccccchhhhccCC---CeEEEEeccCCCC-chhHHHHhhcc-cc--cccccCCCCCCCCCccchhhcccc
Q 039518 466 TEIRNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMK-NTLSAIYNRGI-LG--AFHDWCEPFSTYPRTYDLLHANHL 538 (617)
Q Consensus 466 ~~~Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~-~~l~~~~~RGl-ig--~~~~~~~~f~typrtyDl~H~~~~ 538 (617)
..-.+|||+|||.|.++..|.+. .-...+|+-.|-. +.+..+.++.- .+ ....=++.++.-+.+||+|-++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 44568999999999988777531 0111245555655 66666665521 11 111112334443589999999988
Q ss_pred ccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 539 FSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 539 ~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
|.+. .+. .+..+|-||-|++| |.+++.|
T Consensus 139 lhh~---~d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 139 LHHL---DDA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred eecC---ChH-HHHHHHHHHHHhcC--eeEEEec
Confidence 8764 221 24568999999999 5666654
No 299
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=95.94 E-value=0.015 Score=61.47 Aligned_cols=145 Identities=17% Similarity=0.247 Sum_probs=79.5
Q ss_pred cchhhHHHHHHHHHHhccCCCCCeeeEEeccccccch--hhhccC-CCeEEEEeccCCCCchhHHHHhhcccccccc-cC
Q 039518 445 TDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGF--AVALNS-LPVWVMNIVPISMKNTLSAIYNRGILGAFHD-WC 520 (617)
Q Consensus 445 ~d~~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~f--aa~l~~-~~v~vmnv~p~~~~~~l~~~~~RGlig~~~~-~~ 520 (617)
+-|+.=-+.+.+| ...+ .+|||+|||+|=. ||+++. ..|...-+=|.--.++..-+-.-|+-.-+.- ..
T Consensus 146 ~TT~lcl~~l~~~-----~~~g--~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~ 218 (295)
T PF06325_consen 146 PTTRLCLELLEKY-----VKPG--KRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS 218 (295)
T ss_dssp HHHHHHHHHHHHH-----SSTT--SEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT
T ss_pred HHHHHHHHHHHHh-----ccCC--CEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe
Confidence 3344444445555 2334 5999999999954 555543 4576666555443344444555554332211 12
Q ss_pred CCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh-HHHHHHHhhhhcCCceEEEeecccc
Q 039518 521 EPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK-SLITRIRDLAPKFLWDVELHSLENR 599 (617)
Q Consensus 521 ~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~-~~~~~~~~~~~~~~W~~~~~~~e~~ 599 (617)
+.+.. ..||+|=|+=+... +..++=++.+.|+|||++|++--. +..+.|++..+. -|++.....+
T Consensus 219 ~~~~~--~~~dlvvANI~~~v---------L~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~-- 284 (295)
T PF06325_consen 219 EDLVE--GKFDLVVANILADV---------LLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREE-- 284 (295)
T ss_dssp SCTCC--S-EEEEEEES-HHH---------HHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEE--
T ss_pred ccccc--ccCCEEEECCCHHH---------HHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEE--
Confidence 22333 89999987766652 224566789999999999998321 223445554455 6766554432
Q ss_pred CCCceeEEEEEec
Q 039518 600 EKKMESVLICRKK 612 (617)
Q Consensus 600 ~~~~~~~l~~~k~ 612 (617)
+.=-.|+++|+
T Consensus 285 --~~W~~l~~~Kk 295 (295)
T PF06325_consen 285 --GEWVALVFKKK 295 (295)
T ss_dssp --TTEEEEEEEE-
T ss_pred --CCEEEEEEEeC
Confidence 22456777775
No 300
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=95.93 E-value=0.011 Score=62.58 Aligned_cols=47 Identities=17% Similarity=-0.046 Sum_probs=38.9
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG 273 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg 273 (617)
.++..+||.+||.|..+..+++.......+.++|.++.+++.|+++-
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L 64 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRL 64 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhh
Confidence 45567999999999999999987532347889999999999998763
No 301
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=95.86 E-value=0.019 Score=51.06 Aligned_cols=95 Identities=19% Similarity=0.161 Sum_probs=54.0
Q ss_pred cCCCCCeeeEEeccccccchhhhccCC-C-eEEEEeccCCCCchhHHH----Hhhccccc--c-cc--cCCCCCCCCCcc
Q 039518 462 NVNETEIRNAMDMNAYCGGFAVALNSL-P-VWVMNIVPISMKNTLSAI----YNRGILGA--F-HD--WCEPFSTYPRTY 530 (617)
Q Consensus 462 ~~~~~~~Rn~mDm~~~~g~faa~l~~~-~-v~vmnv~p~~~~~~l~~~----~~RGlig~--~-~~--~~~~f~typrty 530 (617)
.+..+ .+|+|+|||.|.++..+.+. | .-|+.+-+.. ..+..+ -+.|+-.+ . .| |+.. .-+.+|
T Consensus 16 ~~~~~--~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 89 (124)
T TIGR02469 16 RLRPG--DVLWDIGAGSGSITIEAARLVPNGRVYAIERNP--EALRLIERNARRFGVSNIVIVEGDAPEALE--DSLPEP 89 (124)
T ss_pred CCCCC--CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCH--HHHHHHHHHHHHhCCCceEEEeccccccCh--hhcCCC
Confidence 34444 48999999999999988654 2 2333333222 222222 22233111 1 11 2222 123578
Q ss_pred chhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 531 DLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 531 Dl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
|.|=...... .+..++-++-|.|+|||++++.
T Consensus 90 D~v~~~~~~~---------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 90 DRVFIGGSGG---------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CEEEECCcch---------hHHHHHHHHHHHcCCCCEEEEE
Confidence 8874332222 2357899999999999999974
No 302
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=95.81 E-value=0.016 Score=56.22 Aligned_cols=143 Identities=18% Similarity=0.260 Sum_probs=71.4
Q ss_pred CCCCCeeeEEeccccccchhhhccCCC-----eEEEEeccCCCCchhHHHHhhccc---ccccccCCCCCCCCCccchhh
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSLP-----VWVMNIVPISMKNTLSAIYNRGIL---GAFHDWCEPFSTYPRTYDLLH 534 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~~-----v~vmnv~p~~~~~~l~~~~~RGli---g~~~~~~~~f~typrtyDl~H 534 (617)
++.+.-.+|||.||+-|||..++..+. |+-+.+.|.+...-+..+ +|=+ .+...-.+.++.=.+.+|+|-
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceec
Confidence 566678999999999999999998776 455666665322111111 3311 111111222221126899999
Q ss_pred ccccccccccCCCCCC--hhhHHhh---hhhcccCCceEEEe-----cChHHHHHHHhhhhcCCceEEEe-eccccCCCc
Q 039518 535 ANHLFSHYKNRGEVCS--LEDIMLE---MDLIIRPQGFIIIR-----DEKSLITRIRDLAPKFLWDVELH-SLENREKKM 603 (617)
Q Consensus 535 ~~~~~s~~~~~~~~c~--~~~~l~e---~dRilRP~G~~i~~-----d~~~~~~~~~~~~~~~~W~~~~~-~~e~~~~~~ 603 (617)
+|..+..-........ +..++-+ +-..|+|||.+|+. +..+++..++..-+.. .+. -.-.++...
T Consensus 97 ~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v----~~~Kp~~sr~~s~ 172 (181)
T PF01728_consen 97 SDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKV----KIVKPPSSRSESS 172 (181)
T ss_dssp E-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHE----EEEE-TTSBTTCB
T ss_pred cccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEE----EEEECcCCCCCcc
Confidence 8885541100000001 1122222 23559999988874 2235555555543333 333 223455667
Q ss_pred eeEEEEEe
Q 039518 604 ESVLICRK 611 (617)
Q Consensus 604 ~~~l~~~k 611 (617)
|.-+||.+
T Consensus 173 E~Ylv~~~ 180 (181)
T PF01728_consen 173 EEYLVCRG 180 (181)
T ss_dssp EEEEESEE
T ss_pred EEEEEEcC
Confidence 88888764
No 303
>PRK07402 precorrin-6B methylase; Provisional
Probab=95.80 E-value=0.075 Score=52.28 Aligned_cols=123 Identities=13% Similarity=0.114 Sum_probs=62.2
Q ss_pred HHHHHH-HHHhccCCCCCeeeEEeccccccchhhhccC--CCeEEEEeccCCCCchhHHHH----hhccc--cccc-ccC
Q 039518 451 QDQVRH-YWQLMNVNETEIRNAMDMNAYCGGFAVALNS--LPVWVMNIVPISMKNTLSAIY----NRGIL--GAFH-DWC 520 (617)
Q Consensus 451 ~~~v~~-y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~--~~v~vmnv~p~~~~~~l~~~~----~RGli--g~~~-~~~ 520 (617)
+..+.. ..+.+.+..+ .+|+|+|||.|.++..+.. ...-|.-|-+.. ..+..+- +.|+- -+.+ |--
T Consensus 25 ~~~v~~~l~~~l~~~~~--~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~--~~~~~a~~n~~~~~~~~v~~~~~d~~ 100 (196)
T PRK07402 25 KREVRLLLISQLRLEPD--SVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDE--EVVNLIRRNCDRFGVKNVEVIEGSAP 100 (196)
T ss_pred HHHHHHHHHHhcCCCCC--CEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHhCCCCeEEEECchH
Confidence 444443 3444445554 4799999999999876642 222333232221 2222222 22431 1111 111
Q ss_pred CCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC-hHHHHHHHhhhhcC
Q 039518 521 EPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE-KSLITRIRDLAPKF 587 (617)
Q Consensus 521 ~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~-~~~~~~~~~~~~~~ 587 (617)
+.+...+-.+|.++.+ ..-.+..++-++-|+|+|||.+++-.. .+.+.++.+..+.+
T Consensus 101 ~~~~~~~~~~d~v~~~----------~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~ 158 (196)
T PRK07402 101 ECLAQLAPAPDRVCIE----------GGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQL 158 (196)
T ss_pred HHHhhCCCCCCEEEEE----------CCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhc
Confidence 1111111123444311 123567899999999999999998743 33444555555444
No 304
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=95.79 E-value=0.013 Score=61.41 Aligned_cols=101 Identities=17% Similarity=0.311 Sum_probs=74.6
Q ss_pred HhccCCCCCeeeEEeccccccchhhhccCC-CeEEEEeccCCCCchhH----HHHhhccc----ccccccCCCCCCCCCc
Q 039518 459 QLMNVNETEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMKNTLS----AIYNRGIL----GAFHDWCEPFSTYPRT 529 (617)
Q Consensus 459 ~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~~~l~----~~~~RGli----g~~~~~~~~f~typrt 529 (617)
+.|+|++| -+|||+|||-|+++-++... +|=|+.|--.. +|+. -|-++||- -.++||...=. .
T Consensus 66 ~kl~L~~G--~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~--~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e----~ 137 (283)
T COG2230 66 EKLGLKPG--MTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSE--EQLAYAEKRIAARGLEDNVEVRLQDYRDFEE----P 137 (283)
T ss_pred HhcCCCCC--CEEEEeCCChhHHHHHHHHHcCCEEEEeeCCH--HHHHHHHHHHHHcCCCcccEEEecccccccc----c
Confidence 44568888 57999999999999888655 67666553333 4443 36778986 45777765444 3
Q ss_pred cchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 530 YDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 530 yDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
||=|=+-+.|.+. ..-+..+++-=+.++|+|||-+++.
T Consensus 138 fDrIvSvgmfEhv----g~~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 138 FDRIVSVGMFEHV----GKENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred cceeeehhhHHHh----CcccHHHHHHHHHhhcCCCceEEEE
Confidence 8888888888864 3345678999999999999999885
No 305
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=95.75 E-value=0.0074 Score=65.04 Aligned_cols=117 Identities=8% Similarity=-0.042 Sum_probs=69.2
Q ss_pred eeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhhcc---cccccccCCCCCCCCCccchhhccccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNRGI---LGAFHDWCEPFSTYPRTYDLLHANHLFSHYK 543 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~RGl---ig~~~~~~~~f~typrtyDl~H~~~~~s~~~ 543 (617)
..|||+|||.|.++..+.+. +- -+|.=.|.. +.+..+-++.- +-+.+.=-+.++.-+.+||+|-+.+.+..+
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~- 191 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW- 191 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC-
Confidence 47999999999987776432 11 122223333 55555555421 111111112223223799999887777654
Q ss_pred cCCCCCChhhHHhhhhhcccCCceEEEecCh-----------------HHHHHHHhhhhcCCceEEE
Q 039518 544 NRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK-----------------SLITRIRDLAPKFLWDVEL 593 (617)
Q Consensus 544 ~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~-----------------~~~~~~~~~~~~~~W~~~~ 593 (617)
. +.+.+|-|+-|+|+|||.+++.+.. ...+++.+++++.-++...
T Consensus 192 --~---d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~ 253 (340)
T PLN02490 192 --P---DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVK 253 (340)
T ss_pred --C---CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEE
Confidence 2 2357899999999999999875321 0235566677776776433
No 306
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=95.74 E-value=0.018 Score=57.30 Aligned_cols=96 Identities=14% Similarity=0.208 Sum_probs=53.0
Q ss_pred HHHhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----ccc--ccccccCCCCCCCC--
Q 039518 457 YWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GIL--GAFHDWCEPFSTYP-- 527 (617)
Q Consensus 457 y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Gli--g~~~~~~~~f~typ-- 527 (617)
....+.+..+ .+|||+|||.|.+++.|....--|..| |.. +-+..+-++ |+- -+.+ ...+.++|
T Consensus 70 l~~~l~~~~~--~~VLeiG~GsG~~t~~la~~~~~v~~v---d~~~~~~~~a~~~~~~~~~~~v~~~~--~d~~~~~~~~ 142 (212)
T PRK00312 70 MTELLELKPG--DRVLEIGTGSGYQAAVLAHLVRRVFSV---ERIKTLQWEAKRRLKQLGLHNVSVRH--GDGWKGWPAY 142 (212)
T ss_pred HHHhcCCCCC--CEEEEECCCccHHHHHHHHHhCEEEEE---eCCHHHHHHHHHHHHHCCCCceEEEE--CCcccCCCcC
Confidence 3344445444 579999999999988665431112222 222 333333222 431 1111 11123333
Q ss_pred CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 528 RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 528 rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
..||+|..+..+. .+.-++-+.|+|||.+++.
T Consensus 143 ~~fD~I~~~~~~~------------~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 143 APFDRILVTAAAP------------EIPRALLEQLKEGGILVAP 174 (212)
T ss_pred CCcCEEEEccCch------------hhhHHHHHhcCCCcEEEEE
Confidence 6899998665443 2344566899999999885
No 307
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=95.70 E-value=0.048 Score=57.25 Aligned_cols=157 Identities=18% Similarity=0.241 Sum_probs=91.3
Q ss_pred cccchhhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHH----Hhhcc---c
Q 039518 443 FTTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAI----YNRGI---L 513 (617)
Q Consensus 443 f~~d~~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~----~~RGl---i 513 (617)
...||+.+-+.+..- +... +. +|+|||||.|--|.+|... |. .+|.-+|-. .-|.++ -..|+ .
T Consensus 92 Pr~dTe~Lve~~l~~---~~~~-~~--~ilDlGTGSG~iai~la~~~~~--~~V~a~Dis~~Al~~A~~Na~~~~l~~~~ 163 (280)
T COG2890 92 PRPDTELLVEAALAL---LLQL-DK--RILDLGTGSGAIAIALAKEGPD--AEVIAVDISPDALALARENAERNGLVRVL 163 (280)
T ss_pred cCCchHHHHHHHHHh---hhhc-CC--cEEEecCChHHHHHHHHhhCcC--CeEEEEECCHHHHHHHHHHHHHcCCccEE
Confidence 356788887776511 1111 11 9999999999999999643 32 334444444 444433 33454 2
Q ss_pred ccccccCCCCCCCCCccchhhccccccccc----------------cCCCCCCh---hhHHhhhhhcccCCceEEEecCh
Q 039518 514 GAFHDWCEPFSTYPRTYDLLHANHLFSHYK----------------NRGEVCSL---EDIMLEMDLIIRPQGFIIIRDEK 574 (617)
Q Consensus 514 g~~~~~~~~f~typrtyDl~H~~~~~s~~~----------------~~~~~c~~---~~~l~e~dRilRP~G~~i~~d~~ 574 (617)
-+..||=++.+ .+||+|=++==.--.+ .-.....+ ..++-+..++|+|||++++.-..
T Consensus 164 ~~~~dlf~~~~---~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~ 240 (280)
T COG2890 164 VVQSDLFEPLR---GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL 240 (280)
T ss_pred EEeeecccccC---CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC
Confidence 23334444444 5888876542111000 00111222 37888999999999999998776
Q ss_pred HHHHHHHhhhhcCCceEEEeeccccCCCceeEEEEEe
Q 039518 575 SLITRIRDLAPKFLWDVELHSLENREKKMESVLICRK 611 (617)
Q Consensus 575 ~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~k 611 (617)
...++|+++.....+ .........-.+.++++++++
T Consensus 241 ~q~~~v~~~~~~~~~-~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 241 TQGEAVKALFEDTGF-FEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred CcHHHHHHHHHhcCC-ceEEEEEecCCCceEEEEEEe
Confidence 667788888888885 222222223344566666654
No 308
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=95.67 E-value=0.026 Score=56.64 Aligned_cols=100 Identities=14% Similarity=0.064 Sum_probs=52.4
Q ss_pred cCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh-----------CC---CcEEEEecCCCCCCCC
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER-----------GI---GAMISALSTKQLPYPS 290 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er-----------g~---~~~~~~~d~~~Lpf~d 290 (617)
+.++...+|+|||.|......+-. ++. ...|+++.+...+.|.+. |. ++.+..+|+.+.++..
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~--~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~ 117 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCK--KSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVK 117 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--S--EEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCc--EEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHh
Confidence 455677999999999876555432 443 245667666666555421 22 3445555543332111
Q ss_pred ---CCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 291 ---SSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 291 ---~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
..-|+|++++.. +.++....|.++..-||+|-+++ +.
T Consensus 118 ~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~II-s~ 157 (205)
T PF08123_consen 118 DIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARII-ST 157 (205)
T ss_dssp HHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEE-ES
T ss_pred hhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEE-EC
Confidence 236999998643 34556667888888999887765 44
No 309
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.66 E-value=0.096 Score=52.05 Aligned_cols=135 Identities=15% Similarity=0.080 Sum_probs=73.7
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccC-CC--cEEEeeecCCc-------HHHHHHHHHhCC-CcEEEEecCCCCC------
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPL-DI--QTMSFAPKDGH-------ENQIQFALERGI-GAMISALSTKQLP------ 287 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~-gv--~~v~v~~iDis-------~~~lq~A~erg~-~~~~~~~d~~~Lp------ 287 (617)
.+.++++|+|+=.|.|.|+..+... +. .+..+.+.|.. +.+-..+++... +....-.....++
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 4568889999999999999888764 22 34455554431 111122222211 1111111122222
Q ss_pred -CCCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCC------CChhhHHHHHHHHHHcCceEEE
Q 039518 288 -YPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDK------DYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 288 -f~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~------~~~~~W~~le~La~~~gw~~v~ 360 (617)
.+..++|.++.... +| ......+..++++.|||||.+++.+.....-.. .+...-..+.+..+..||++..
T Consensus 125 ~~~~~~~yhdmh~k~-i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~a 202 (238)
T COG4798 125 LVPTAQNYHDMHNKN-IH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEA 202 (238)
T ss_pred ccccchhhhhhhccc-cC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeee
Confidence 12334444443332 22 334678899999999999999998643222110 0111112267778889999887
Q ss_pred E
Q 039518 361 R 361 (617)
Q Consensus 361 ~ 361 (617)
+
T Consensus 203 e 203 (238)
T COG4798 203 E 203 (238)
T ss_pred e
Confidence 4
No 310
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.58 E-value=0.048 Score=57.14 Aligned_cols=102 Identities=11% Similarity=0.086 Sum_probs=60.3
Q ss_pred CCeEEEECCCCcHHHHHhcc-CCCcEEEeeecCCcHHHHHHHHHh-------CCCcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 229 VFQVLDVGCGVASFSAFLLP-LDIQTMSFAPKDGHENQIQFALER-------GIGAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~-~gv~~v~v~~iDis~~~lq~A~er-------g~~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
..+|+=||+|.=-++..+.. +......+.++|+++++++.+++- +..+.+..+|....+..-..||+|+.+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 35899999997655555443 322234678889999999888652 4457888888766665456899999764
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.+..-.++..+.|..+.+.++||..+++-.
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 332222467889999999999999999964
No 311
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=95.50 E-value=0.017 Score=57.69 Aligned_cols=94 Identities=18% Similarity=0.248 Sum_probs=61.2
Q ss_pred eeeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhhcc-ccc-ccccCCCCCCCCCccchhhccccccccc
Q 039518 468 IRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNRGI-LGA-FHDWCEPFSTYPRTYDLLHANHLFSHYK 543 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~RGl-ig~-~~~~~~~f~typrtyDl~H~~~~~s~~~ 543 (617)
-..|||+|||.|-+..+|... +- .++.-.|-. +.+..+-++-- +.+ -.|..++|+ +++||+|-+.+++.+.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~--~~sfD~V~~~~vL~hl- 118 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFK--DNFFDLVLTKGVLIHI- 118 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCC--CCCEEEEEECChhhhC-
Confidence 357999999999999998764 21 123333444 56665555320 111 223334443 3899999999999865
Q ss_pred cCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 544 NRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 544 ~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
. .=.+..++-||-|++ +++++|.
T Consensus 119 --~-p~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 119 --N-PDNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred --C-HHHHHHHHHHHHhhc--CcEEEEE
Confidence 2 224567889999998 5788885
No 312
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.50 E-value=0.0049 Score=62.38 Aligned_cols=141 Identities=18% Similarity=0.223 Sum_probs=94.8
Q ss_pred CCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhccccc-ccccCCCCC--CCCCccchhhcccc
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGILGA-FHDWCEPFS--TYPRTYDLLHANHL 538 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGlig~-~~~~~~~f~--typrtyDl~H~~~~ 538 (617)
.+.|..|.++|.|||+|-++-+|.+.--- +-=+|-. |-|..+.|+|+--. ||-=-..|. +=++-||||-|..+
T Consensus 121 ~~~g~F~~~lDLGCGTGL~G~~lR~~a~~---ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV 197 (287)
T COG4976 121 ADLGPFRRMLDLGCGTGLTGEALRDMADR---LTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV 197 (287)
T ss_pred ccCCccceeeecccCcCcccHhHHHHHhh---ccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH
Confidence 56677999999999999999999764210 1122334 89999999996221 111111244 44789999999999
Q ss_pred ccccccCCCCCChhhHHhhhhhcccCCceEEEecCh----------------HHHHHHHhhhhcCCceEEEee-----cc
Q 039518 539 FSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK----------------SLITRIRDLAPKFLWDVELHS-----LE 597 (617)
Q Consensus 539 ~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~----------------~~~~~~~~~~~~~~W~~~~~~-----~e 597 (617)
|+-. -.++.++.=.++.|.|||.++++-+. .-...|+.+..+---++..+. .+
T Consensus 198 l~Yl------G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d 271 (287)
T COG4976 198 LPYL------GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRD 271 (287)
T ss_pred HHhh------cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhh
Confidence 9833 35788999999999999999998211 112356666666666654431 23
Q ss_pred ccCCCceeEEEEEec
Q 039518 598 NREKKMESVLICRKK 612 (617)
Q Consensus 598 ~~~~~~~~~l~~~k~ 612 (617)
.|.-.+..+.|++|+
T Consensus 272 ~g~pv~G~L~iark~ 286 (287)
T COG4976 272 AGEPVPGILVIARKK 286 (287)
T ss_pred cCCCCCCceEEEecC
Confidence 444455677788775
No 313
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.47 E-value=0.08 Score=57.01 Aligned_cols=126 Identities=17% Similarity=0.158 Sum_probs=83.8
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh------------CCCcEEEEecCCC-CCCCCCCee
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER------------GIGAMISALSTKQ-LPYPSSSFE 294 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er------------g~~~~~~~~d~~~-Lpf~d~sFD 294 (617)
+-.+||-+|.|.|.-+..|.+. +....|+-+|+++.|++.++.. ...+.+...|+.+ +.-..+.||
T Consensus 289 ~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 3456999999999999999875 3345888899999999999843 1224444444322 222345899
Q ss_pred EEEecccccccccch-------HHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 295 MVHCSRCRVDWHAND-------GILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 295 lV~~s~~l~h~~~d~-------~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
.|+.-. .-+.++ .++..-+.|.|+++|.+++.....+....- .| .+..-++++|+.+.--
T Consensus 368 ~vIVDl---~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~v---fw-~i~aTik~AG~~~~Py 434 (508)
T COG4262 368 VVIVDL---PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRV---FW-RIDATIKSAGYRVWPY 434 (508)
T ss_pred EEEEeC---CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCce---ee-eehhHHHhCcceeeee
Confidence 998531 112122 356777889999999999976544443222 14 3667788899876653
No 314
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=95.46 E-value=0.01 Score=58.77 Aligned_cols=96 Identities=15% Similarity=0.176 Sum_probs=73.2
Q ss_pred CCCCCeeeEEeccccccchhhhccC-CCeEEEEeccCCCCchhHHHHhhcccccccccCCCCCCCC-Cccchhhcccccc
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNS-LPVWVMNIVPISMKNTLSAIYNRGILGAFHDWCEPFSTYP-RTYDLLHANHLFS 540 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~-~~v~vmnv~p~~~~~~l~~~~~RGlig~~~~~~~~f~typ-rtyDl~H~~~~~s 540 (617)
|.+| -.|||.|||-|.+.++|.+ +.|-..-|- ..+..+.-...||+-=+-+|.-+-++.|| .+||.|=.+..+.
T Consensus 11 I~pg--srVLDLGCGdG~LL~~L~~~k~v~g~GvE--id~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ 86 (193)
T PF07021_consen 11 IEPG--SRVLDLGCGDGELLAYLKDEKQVDGYGVE--IDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQ 86 (193)
T ss_pred cCCC--CEEEecCCCchHHHHHHHHhcCCeEEEEe--cCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHH
Confidence 4555 5799999999999999976 677665543 12255777899999988899999999999 9999988666665
Q ss_pred ccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 541 HYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 541 ~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
.. =..+.+|-||=| =|.-.|++
T Consensus 87 ~~------~~P~~vL~EmlR---Vgr~~IVs 108 (193)
T PF07021_consen 87 AV------RRPDEVLEEMLR---VGRRAIVS 108 (193)
T ss_pred hH------hHHHHHHHHHHH---hcCeEEEE
Confidence 32 124578999955 47788876
No 315
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=95.42 E-value=0.037 Score=58.00 Aligned_cols=137 Identities=18% Similarity=0.271 Sum_probs=80.0
Q ss_pred eeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhh----cc---c-ccccccCCCCCCCCCccchhhcccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNR----GI---L-GAFHDWCEPFSTYPRTYDLLHANHL 538 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~R----Gl---i-g~~~~~~~~f~typrtyDl~H~~~~ 538 (617)
..|+|+|||.|.++.+|... +-+ +|.-.|-. ..+.++-+. |+ + =+-.||.++++. ..||+|=++-=
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~--~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNA--EVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG--QKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC--CCccEEEECCC
Confidence 47999999999999888653 211 23333443 444444432 33 1 223577776642 37998866411
Q ss_pred cc----------ccccCCCCC---------ChhhHHhhhhhcccCCceEEEecChHHHHHHHhhhh-cCCce-EEEeecc
Q 039518 539 FS----------HYKNRGEVC---------SLEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAP-KFLWD-VELHSLE 597 (617)
Q Consensus 539 ~s----------~~~~~~~~c---------~~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~-~~~W~-~~~~~~e 597 (617)
+. ....+...+ .+..++-+.-++|+|||++++--....-..++++.. ...|. +.+..
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~-- 269 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGR-- 269 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEec--
Confidence 11 000001111 134688889999999999999755555667777665 45564 33332
Q ss_pred ccCCCceeEEEEEec
Q 039518 598 NREKKMESVLICRKK 612 (617)
Q Consensus 598 ~~~~~~~~~l~~~k~ 612 (617)
| -.+.++++++++.
T Consensus 270 D-~~g~~R~~~~~~~ 283 (284)
T TIGR00536 270 D-LNGKERVVLGFYH 283 (284)
T ss_pred C-CCCCceEEEEEec
Confidence 2 3456888888653
No 316
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=95.41 E-value=0.01 Score=58.27 Aligned_cols=86 Identities=20% Similarity=0.247 Sum_probs=53.5
Q ss_pred eEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhhcccccccccCCCCCCCC-CccchhhccccccccccCC
Q 039518 470 NAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNRGILGAFHDWCEPFSTYP-RTYDLLHANHLFSHYKNRG 546 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~RGlig~~~~~~~~f~typ-rtyDl~H~~~~~s~~~~~~ 546 (617)
+|||+|||.|.++.+|.+. .+=+..| |.. ..+..+.++|+--+..|..+.++.++ ++||+|-+.+.|.+. .
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~~~~gi---D~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~---~ 89 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQVRGYGI---EIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQAT---R 89 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCCcEEEE---eCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcC---c
Confidence 7999999999999988643 2212222 332 45555666775333344443333344 799999998888643 2
Q ss_pred CCCChhhHHhhhhhcccC
Q 039518 547 EVCSLEDIMLEMDLIIRP 564 (617)
Q Consensus 547 ~~c~~~~~l~e~dRilRP 564 (617)
+...+|-||-|++++
T Consensus 90 ---d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 90 ---NPEEILDEMLRVGRH 104 (194)
T ss_pred ---CHHHHHHHHHHhCCe
Confidence 255677777666554
No 317
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=95.38 E-value=0.01 Score=62.69 Aligned_cols=102 Identities=12% Similarity=0.168 Sum_probs=59.7
Q ss_pred CCCCeeeEEeccccccchhhhccCC-CeEEEEeccCCCCchhHH----HHhhcccccccccCCCCC--CCCCccchhhcc
Q 039518 464 NETEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMKNTLSA----IYNRGILGAFHDWCEPFS--TYPRTYDLLHAN 536 (617)
Q Consensus 464 ~~~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~~~l~~----~~~RGlig~~~~~~~~f~--typrtyDl~H~~ 536 (617)
.....+.|+|+|||.|.++.++.++ |-. ++.-.|-+..+.. +-+.|+-.-++-.+..|- .+| .+|++-..
T Consensus 146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p~~--~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~ 222 (306)
T TIGR02716 146 KLDGVKKMIDVGGGIGDISAAMLKHFPEL--DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFC 222 (306)
T ss_pred CCCCCCEEEEeCCchhHHHHHHHHHCCCC--EEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeE
Confidence 3345679999999999999888644 321 1122233334433 334465332222222221 244 36887655
Q ss_pred ccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 537 HLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 537 ~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+++-.| . .-....+|-++-|.|+|||.++|-|
T Consensus 223 ~~lh~~---~-~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 223 RILYSA---N-EQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred hhhhcC---C-hHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 555433 1 1123468889999999999999875
No 318
>PRK04457 spermidine synthase; Provisional
Probab=95.35 E-value=0.039 Score=57.29 Aligned_cols=139 Identities=11% Similarity=0.101 Sum_probs=72.7
Q ss_pred CCeeeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhh-cccc-------cccccCCCCCCCCCccchhhc
Q 039518 466 TEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNR-GILG-------AFHDWCEPFSTYPRTYDLLHA 535 (617)
Q Consensus 466 ~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~R-Glig-------~~~~~~~~f~typrtyDl~H~ 535 (617)
..-++|||+|||.|+++.+|... |-- .|.-.+-. ..+.++-+. ++.+ +..|--+-+...|.+||+|=.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~--~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDT--RQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCC--eEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 34678999999999999877532 221 11222222 344444433 1211 112222223345678999965
Q ss_pred cccccccccCCCCCChhhHHhhhhhcccCCceEEE---ecChHHHHHHHhhhhcCCceEEEeeccccCCCceeEEEEEe
Q 039518 536 NHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIII---RDEKSLITRIRDLAPKFLWDVELHSLENREKKMESVLICRK 611 (617)
Q Consensus 536 ~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~---~d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~k 611 (617)
+ .|..- ..........++-++=++|+|||.+++ ..+......++.+...+.-.+.+...+ .....|+++.|
T Consensus 143 D-~~~~~-~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~---~~~N~v~~a~~ 216 (262)
T PRK04457 143 D-GFDGE-GIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAE---SHGNVAVFAFK 216 (262)
T ss_pred e-CCCCC-CCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecC---CCccEEEEEEC
Confidence 4 23310 001112235888999999999999997 233333333444444443333333222 12357788876
No 319
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=95.30 E-value=0.034 Score=55.86 Aligned_cols=108 Identities=16% Similarity=0.202 Sum_probs=58.2
Q ss_pred eeEEeccccccchhhhccCC-CeEEEEeccCCCCchhHHHHhhcccccccccCCCCCCCCCccchhhccccccccccCCC
Q 039518 469 RNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMKNTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGE 547 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~~~l~~~~~RGlig~~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~ 547 (617)
-.|-|||||-|-.|+++.+. .|.-...|..+..=|. -| |. --|+. .-+.|++= -|+|+ =
T Consensus 74 ~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~Vta---cd---ia-----~vPL~--~~svDv~V--fcLSL-----M 133 (219)
T PF05148_consen 74 LVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPRVTA---CD---IA-----NVPLE--DESVDVAV--FCLSL-----M 133 (219)
T ss_dssp S-EEEES-TT-HHHHH--S---EEEEESS-SSTTEEE---S----TT-----S-S----TT-EEEEE--EES--------
T ss_pred EEEEECCCchHHHHHhcccCceEEEeeccCCCCCEEE---ec---Cc-----cCcCC--CCceeEEE--EEhhh-----h
Confidence 47999999999999887532 4665555555432110 00 00 01222 26777653 44442 2
Q ss_pred CCChhhHHhhhhhcccCCceEEEecChHHHHHHH---hhhhcCCceEEEeec
Q 039518 548 VCSLEDIMLEMDLIIRPQGFIIIRDEKSLITRIR---DLAPKFLWDVELHSL 596 (617)
Q Consensus 548 ~c~~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~---~~~~~~~W~~~~~~~ 596 (617)
+=+..++|.|-.|||||||.++|-+-.+-.+.++ +..+++-.+....|.
T Consensus 134 GTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 134 GTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE-
T ss_pred CCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEeccc
Confidence 3456799999999999999999975544333333 445677888777664
No 320
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.15 E-value=0.05 Score=54.50 Aligned_cols=99 Identities=14% Similarity=0.075 Sum_probs=59.4
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC--------CCCCCeeEEE
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP--------YPSSSFEMVH 297 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp--------f~d~sFDlV~ 297 (617)
+.++.+|+|+|+-.|+|+..++++......|.++|+.+-- --..+.+..+|+..-+ +....+|+|+
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~ 116 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------PIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVL 116 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------cCCCceEEeeeccCccHHHHHHHHcCCCCcceEE
Confidence 3567889999999999999998763221123344443221 0112566666654432 2344579998
Q ss_pred ecc---cccccccch-------HHHHHHHHHhccCCeEEEEEe
Q 039518 298 CSR---CRVDWHAND-------GILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 298 ~s~---~l~h~~~d~-------~~~L~el~RvLrPGG~Liis~ 330 (617)
|-. +..++.-|. ..++.-+.++|+|||.+++-.
T Consensus 117 sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 117 SDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred ecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 632 112222121 235666778999999999965
No 321
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.14 E-value=0.032 Score=59.31 Aligned_cols=116 Identities=19% Similarity=0.364 Sum_probs=66.4
Q ss_pred eeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHh----hcc---cc-cccccCCCCCCCCCccchhhcccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYN----RGI---LG-AFHDWCEPFSTYPRTYDLLHANHL 538 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~----RGl---ig-~~~~~~~~f~typrtyDl~H~~~~ 538 (617)
.+|+|+|||.|.++.+|... |- .+|+-.|-. ..+..+-+ .|+ |- +-.|+-+.++ +.+||+|-++-=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCC
Confidence 57999999999999988643 32 223344443 44444433 344 22 2235544443 368999987622
Q ss_pred ccc----------cccCCC--------CCC-hhhHHhhhhhcccCCceEEEecChHHHHHHHhhhhc--CCc
Q 039518 539 FSH----------YKNRGE--------VCS-LEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPK--FLW 589 (617)
Q Consensus 539 ~s~----------~~~~~~--------~c~-~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~--~~W 589 (617)
+.. +..+.. +.. +..++-+.-+.|+|||.+++--..+ ..++.++... +.|
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~~~~~ 281 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDVPFTW 281 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhCCCEE
Confidence 210 000000 111 2478889999999999999853222 3456666654 345
No 322
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.05 E-value=0.014 Score=61.25 Aligned_cols=129 Identities=19% Similarity=0.260 Sum_probs=80.2
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC-cEEEEecCCCC-C-CCCCCeeEEE
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG-AMISALSTKQL-P-YPSSSFEMVH 297 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~-~~~~~~d~~~L-p-f~d~sFDlV~ 297 (617)
...++.+|||+.+|.|.=+..+++.-..-..+.+.|++...++...++ |.. +.+...|...+ + .....||.|+
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vl 161 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVL 161 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEE
T ss_pred cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhh
Confidence 345677899999999988888877532122677889999988776654 554 34444554443 1 2234699998
Q ss_pred e----cccccccccc------------------hHHHHHHHHHhc----cCCeEEEEEeCCCCCCCCCChhhHHHHHHHH
Q 039518 298 C----SRCRVDWHAN------------------DGILLKEVDRVL----RPNGYFVYSAPPAYRKDKDYPLIWDKLVNLT 351 (617)
Q Consensus 298 ~----s~~l~h~~~d------------------~~~~L~el~RvL----rPGG~Liis~p~~~~~~~~~~~~W~~le~La 351 (617)
. +.. -.+..+ ..++|..+.+.| ||||+++.++-.......+ +.++.++
T Consensus 162 vDaPCSg~-G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE-----~vV~~fl 235 (283)
T PF01189_consen 162 VDAPCSGL-GTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENE-----EVVEKFL 235 (283)
T ss_dssp EECSCCCG-GGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTH-----HHHHHHH
T ss_pred cCCCccch-hhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHH-----HHHHHHH
Confidence 5 211 111111 135799999999 9999999998543322222 2366666
Q ss_pred HHc-CceEE
Q 039518 352 TAM-CWKLI 359 (617)
Q Consensus 352 ~~~-gw~~v 359 (617)
++. .|+.+
T Consensus 236 ~~~~~~~l~ 244 (283)
T PF01189_consen 236 KRHPDFELV 244 (283)
T ss_dssp HHSTSEEEE
T ss_pred HhCCCcEEE
Confidence 654 44444
No 323
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=94.88 E-value=0.056 Score=53.95 Aligned_cols=99 Identities=11% Similarity=0.150 Sum_probs=59.5
Q ss_pred eeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cccccccccCCCCCCCCCccchhhcccccccc
Q 039518 468 IRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GILGAFHDWCEPFSTYPRTYDLLHANHLFSHY 542 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Glig~~~~~~~~f~typrtyDl~H~~~~~s~~ 542 (617)
-.+|||+|||.|.|+.+|.+...- |.-.|.. +.+..+-++ |+-...+-....++.-+.+||+|-+..++.++
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~~---v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~ 140 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGAK---VVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHY 140 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcC
Confidence 368999999999999988765432 3333333 444444443 22111111112244335789999988888654
Q ss_pred ccCCCCCChhhHHhhhhhcccCCceEEEecC
Q 039518 543 KNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 543 ~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
. .-.+..++-++-|++++++.+.+...
T Consensus 141 ---~-~~~~~~~l~~l~~~~~~~~~i~~~~~ 167 (230)
T PRK07580 141 ---P-QEDAARMLAHLASLTRGSLIFTFAPY 167 (230)
T ss_pred ---C-HHHHHHHHHHHHhhcCCeEEEEECCc
Confidence 2 22456778888888866666555443
No 324
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=94.87 E-value=0.026 Score=58.14 Aligned_cols=107 Identities=19% Similarity=0.284 Sum_probs=71.5
Q ss_pred eEEeccccccchhhhccCCCeEEEEeccCCCCchhHHHHhhcccccccccCCCCCCCCCccchhhccccccccccCCCCC
Q 039518 470 NAMDMNAYCGGFAVALNSLPVWVMNIVPISMKNTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVC 549 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~~~l~~~~~RGlig~~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~~c 549 (617)
.|-|||||-|-.|. -...+|.-|-.|+.+..=+.--|-. -|+. .+|-|++- .|+|+ =+-
T Consensus 183 vIaD~GCGEakiA~-~~~~kV~SfDL~a~~~~V~~cDm~~-----------vPl~--d~svDvaV--~CLSL-----Mgt 241 (325)
T KOG3045|consen 183 VIADFGCGEAKIAS-SERHKVHSFDLVAVNERVIACDMRN-----------VPLE--DESVDVAV--FCLSL-----MGT 241 (325)
T ss_pred EEEecccchhhhhh-ccccceeeeeeecCCCceeeccccC-----------CcCc--cCcccEEE--eeHhh-----hcc
Confidence 58899999887765 4456789898888877532110100 1222 37888754 56663 244
Q ss_pred ChhhHHhhhhhcccCCceEEEecChHHHHHHHhhh---hcCCceEEEeecc
Q 039518 550 SLEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLA---PKFLWDVELHSLE 597 (617)
Q Consensus 550 ~~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~---~~~~W~~~~~~~e 597 (617)
++.+.+.|..|||+|||.++|-+-.+-...++.++ ..|-.++...|.+
T Consensus 242 n~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 242 NLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred cHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhh
Confidence 67799999999999999999976554444444433 6677777766644
No 325
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=94.82 E-value=0.057 Score=53.97 Aligned_cols=99 Identities=8% Similarity=0.138 Sum_probs=62.2
Q ss_pred eeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhccc-c---cccccCCCCCCCCCccchhhcccccccc
Q 039518 468 IRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGIL-G---AFHDWCEPFSTYPRTYDLLHANHLFSHY 542 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGli-g---~~~~~~~~f~typrtyDl~H~~~~~s~~ 542 (617)
-.+|||+|||.|.++.+|.+...= |.=.|.. +.+..+.+|--. + -..=.+..+...|.+||+|=+..++.++
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~~---v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~ 132 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGAI---VKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHY 132 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhC
Confidence 468999999999999999876542 3333444 556555554310 0 0011112222234789988766666543
Q ss_pred ccCCCCCChhhHHhhhhhcccCCceEEEecC
Q 039518 543 KNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 543 ~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
..-.+..++-++.|+++|++++.+...
T Consensus 133 ----~~~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 133 ----PASDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred ----CHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 223466789999999999888887643
No 326
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=94.78 E-value=0.081 Score=54.82 Aligned_cols=102 Identities=12% Similarity=0.081 Sum_probs=69.6
Q ss_pred hHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh---CCCcEEEEecC
Q 039518 207 PEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER---GIGAMISALST 283 (617)
Q Consensus 207 ~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er---g~~~~~~~~d~ 283 (617)
....+.|.+.+... ++..|||||+|.|.++..|++.+. .+..+|+++.+.+..+++ ..++.+..+|+
T Consensus 16 ~~~~~~Iv~~~~~~-------~~~~VlEiGpG~G~lT~~L~~~~~---~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~ 85 (262)
T PF00398_consen 16 PNIADKIVDALDLS-------EGDTVLEIGPGPGALTRELLKRGK---RVIAVEIDPDLAKHLKERFASNPNVEVINGDF 85 (262)
T ss_dssp HHHHHHHHHHHTCG-------TTSEEEEESSTTSCCHHHHHHHSS---EEEEEESSHHHHHHHHHHCTTCSSEEEEES-T
T ss_pred HHHHHHHHHhcCCC-------CCCEEEEeCCCCccchhhHhcccC---cceeecCcHhHHHHHHHHhhhcccceeeecch
Confidence 45566666665332 445699999999999999998873 566778999999888885 34688888898
Q ss_pred CCCCCCC---CCeeEEEecccccccccchHHHHHHHHHhccC
Q 039518 284 KQLPYPS---SSFEMVHCSRCRVDWHANDGILLKEVDRVLRP 322 (617)
Q Consensus 284 ~~Lpf~d---~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrP 322 (617)
..+..+. +.-..|+++. ++. -...++..+...-+.
T Consensus 86 l~~~~~~~~~~~~~~vv~Nl---Py~-is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 86 LKWDLYDLLKNQPLLVVGNL---PYN-ISSPILRKLLELYRF 123 (262)
T ss_dssp TTSCGGGHCSSSEEEEEEEE---TGT-GHHHHHHHHHHHGGG
T ss_pred hccccHHhhcCCceEEEEEe---ccc-chHHHHHHHhhcccc
Confidence 8777554 4456677652 322 234566666654444
No 327
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=94.74 E-value=0.059 Score=56.63 Aligned_cols=119 Identities=16% Similarity=0.285 Sum_probs=67.6
Q ss_pred eeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHh----hccc---c-cccccCCCCCCCCCccchhhcccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYN----RGIL---G-AFHDWCEPFSTYPRTYDLLHANHL 538 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~----RGli---g-~~~~~~~~f~typrtyDl~H~~~~ 538 (617)
.+|||+|||.|.++.+|... |-. +|.-.|-. ..+.++-+ .|+- - +..|+-+.++ +..||+|=++-=
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~--~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~NPP 198 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEA--EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVSNPP 198 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEECCC
Confidence 57999999999999988753 211 23333443 44444333 3542 2 2234444443 257999887522
Q ss_pred ccc----------cccC--------CCCCC-hhhHHhhhhhcccCCceEEEecChHHHHHHHhhhhcCCceEE
Q 039518 539 FSH----------YKNR--------GEVCS-LEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVE 592 (617)
Q Consensus 539 ~s~----------~~~~--------~~~c~-~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~ 592 (617)
+.. +..+ .+... +..++-+.-+.|+|||.+++--.... ++++++.....|.-.
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~ 270 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWL 270 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCcee
Confidence 110 0000 01111 24678889999999999998643333 577777765544433
No 328
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=94.73 E-value=0.08 Score=57.38 Aligned_cols=51 Identities=27% Similarity=0.281 Sum_probs=36.9
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCC
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTK 284 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~ 284 (617)
+|||+=||+|.|+..|++..- .+.++|+++.+++.|+++ ++ ++.+..++++
T Consensus 199 ~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~ 254 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAE 254 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SH
T ss_pred cEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeecc
Confidence 599999999999999998765 567779999999888765 44 4677665543
No 329
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=94.55 E-value=0.052 Score=52.42 Aligned_cols=129 Identities=17% Similarity=0.244 Sum_probs=71.0
Q ss_pred cccchhhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHh----hccc---
Q 039518 443 FTTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYN----RGIL--- 513 (617)
Q Consensus 443 f~~d~~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~----RGli--- 513 (617)
+..++..=-+.+... .-.+|||+|||+|-.+.+|..+ +-..+-.+ |-. .-+..+.+ -|+-
T Consensus 16 ~d~~t~lL~~~l~~~---------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~v--Di~~~a~~~a~~n~~~n~~~~v~ 84 (170)
T PF05175_consen 16 LDAGTRLLLDNLPKH---------KGGRVLDLGCGSGVISLALAKRGPDAKVTAV--DINPDALELAKRNAERNGLENVE 84 (170)
T ss_dssp HHHHHHHHHHHHHHH---------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEE--ESBHHHHHHHHHHHHHTTCTTEE
T ss_pred CCHHHHHHHHHHhhc---------cCCeEEEecCChHHHHHHHHHhCCCCEEEEE--cCCHHHHHHHHHHHHhcCccccc
Confidence 334555544444443 2367999999999888877543 22222222 333 33333322 2332
Q ss_pred ccccccCCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceE--EEecChHHHHHHHhhhh
Q 039518 514 GAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFI--IIRDEKSLITRIRDLAP 585 (617)
Q Consensus 514 g~~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~--i~~d~~~~~~~~~~~~~ 585 (617)
-+.+|+.+.+. +..||+|=++-=|..= .......+..++-+-=++|+|||.+ +++.....-..++++..
T Consensus 85 ~~~~d~~~~~~--~~~fD~Iv~NPP~~~~-~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 85 VVQSDLFEALP--DGKFDLIVSNPPFHAG-GDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp EEESSTTTTCC--TTCEEEEEE---SBTT-SHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred ccccccccccc--ccceeEEEEccchhcc-cccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 34556666665 5899998765443200 0011123568888999999999977 44554444444555444
No 330
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.48 E-value=0.1 Score=55.98 Aligned_cols=102 Identities=14% Similarity=0.075 Sum_probs=57.1
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHH--hCCC-c--EEEEec--CCCCCCC-CCCeeEEEeccc
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALE--RGIG-A--MISALS--TKQLPYP-SSSFEMVHCSRC 301 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~e--rg~~-~--~~~~~d--~~~Lpf~-d~sFDlV~~s~~ 301 (617)
++|||+|.|.|.-+..+-..-+..-+..-++.++..-+.... +.+. . .....+ ..+++++ ...|++|+...-
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~e 194 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLDE 194 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhhh
Confidence 459999999997655554433322233334555555433321 1110 0 001111 2345554 346888876654
Q ss_pred ccccccc--hHHHHHHHHHhccCCeEEEEEeC
Q 039518 302 RVDWHAN--DGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 302 l~h~~~d--~~~~L~el~RvLrPGG~Liis~p 331 (617)
+.+.... ....++.+..+++|||.|+|..+
T Consensus 195 Ll~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 195 LLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 5443311 23478999999999999999875
No 331
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=94.42 E-value=0.32 Score=48.84 Aligned_cols=115 Identities=13% Similarity=0.081 Sum_probs=74.6
Q ss_pred EEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEec-CCCCCCCCCCeeEEEecccccc
Q 039518 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALS-TKQLPYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 232 VLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d-~~~Lpf~d~sFDlV~~s~~l~h 304 (617)
|.||||--|.+..+|++++.. -.+.+.|+++.-++.|++. +. .+.+..+| ++.++ +.+..|.|+.+.+--.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~-~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKA-PKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC-CCCCCCEEEEecCCHH
Confidence 689999999999999999864 3677889999999999875 43 35666666 34443 2223788886542211
Q ss_pred cccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 305 WHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 305 ~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
-....|.+....++..-.|++.-. .. ...+.+.+.+.||.++..
T Consensus 79 ---lI~~ILe~~~~~~~~~~~lILqP~--------~~--~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 79 ---LIIEILEAGPEKLSSAKRLILQPN--------TH--AYELRRWLYENGFEIIDE 122 (205)
T ss_dssp ---HHHHHHHHTGGGGTT--EEEEEES--------S---HHHHHHHHHHTTEEEEEE
T ss_pred ---HHHHHHHhhHHHhccCCeEEEeCC--------CC--hHHHHHHHHHCCCEEEEe
Confidence 244567777777777667777431 12 566999999999998874
No 332
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=94.41 E-value=0.11 Score=57.43 Aligned_cols=156 Identities=12% Similarity=0.147 Sum_probs=86.5
Q ss_pred cchhhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccC-CCeEEEEeccCCCC-chhHHHHh----hcc-c-ccc
Q 039518 445 TDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNS-LPVWVMNIVPISMK-NTLSAIYN----RGI-L-GAF 516 (617)
Q Consensus 445 ~d~~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~-~~v~vmnv~p~~~~-~~l~~~~~----RGl-i-g~~ 516 (617)
.+|+.+.+.+-.. +..+ .+|+|+|||.|.++.+|.. .|-. +|.-.|-. ..+..+-+ .|+ + =+-
T Consensus 236 peTE~LVe~aL~~-----l~~~--~rVLDLGcGSG~IaiaLA~~~p~a--~VtAVDiS~~ALe~AreNa~~~g~rV~fi~ 306 (423)
T PRK14966 236 PETEHLVEAVLAR-----LPEN--GRVWDLGTGSGAVAVTVALERPDA--FVRASDISPPALETARKNAADLGARVEFAH 306 (423)
T ss_pred ccHHHHHHHhhhc-----cCCC--CEEEEEeChhhHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCcEEEEE
Confidence 4566665555332 2233 3799999999999987753 2321 22223333 44444333 232 1 223
Q ss_pred cccCCC-CCCCCCccchhhccccccccc------------------cCCCCCC-hhhHHhhhhhcccCCceEEEecChHH
Q 039518 517 HDWCEP-FSTYPRTYDLLHANHLFSHYK------------------NRGEVCS-LEDIMLEMDLIIRPQGFIIIRDEKSL 576 (617)
Q Consensus 517 ~~~~~~-f~typrtyDl~H~~~~~s~~~------------------~~~~~c~-~~~~l~e~dRilRP~G~~i~~d~~~~ 576 (617)
.|+.+. ++. ...||+|-++-=+..-. ...+... +..++-+.-+.|+|||++++-=..+.
T Consensus 307 gDl~e~~l~~-~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q 385 (423)
T PRK14966 307 GSWFDTDMPS-EGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQ 385 (423)
T ss_pred cchhcccccc-CCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccH
Confidence 455443 211 24699988764332100 0001111 23566677889999999988645556
Q ss_pred HHHHHhhhhcCCceEEEeeccccCCCceeEEEEEec
Q 039518 577 ITRIRDLAPKFLWDVELHSLENREKKMESVLICRKK 612 (617)
Q Consensus 577 ~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~k~ 612 (617)
-++++++++...|+..... ..-.+.++++++++.
T Consensus 386 ~e~V~~ll~~~Gf~~v~v~--kDl~G~dR~v~~~~~ 419 (423)
T PRK14966 386 GAAVRGVLAENGFSGVETL--PDLAGLDRVTLGKYM 419 (423)
T ss_pred HHHHHHHHHHCCCcEEEEE--EcCCCCcEEEEEEEh
Confidence 6788888888777643321 123356899988753
No 333
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=94.36 E-value=0.049 Score=56.33 Aligned_cols=90 Identities=14% Similarity=0.326 Sum_probs=61.4
Q ss_pred CeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhcc--cccccccCCCCCCCCCccchhhccccccccc
Q 039518 467 EIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGI--LGAFHDWCEPFSTYPRTYDLLHANHLFSHYK 543 (617)
Q Consensus 467 ~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGl--ig~~~~~~~~f~typrtyDl~H~~~~~s~~~ 543 (617)
+..++||+|||-|+--+.|.. ..=.|.-++.. .-..-.-+||+ +++. +|-+. +..||+|-|-+|+.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~---~f~~v~aTE~S~~Mr~rL~~kg~~vl~~~-~w~~~----~~~fDvIscLNvLD--- 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAP---LFKEVYATEASPPMRWRLSKKGFTVLDID-DWQQT----DFKFDVISCLNVLD--- 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHh---hcceEEeecCCHHHHHHHHhCCCeEEehh-hhhcc----CCceEEEeehhhhh---
Confidence 578899999999998888743 11112223333 22223456884 4433 46542 46799999777655
Q ss_pred cCCCCCChh-hHHhhhhhcccCCceEEEe
Q 039518 544 NRGEVCSLE-DIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 544 ~~~~~c~~~-~~l~e~dRilRP~G~~i~~ 571 (617)
||.-. .+|-+|-+-|+|+|.+|+.
T Consensus 163 ----Rc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 163 ----RCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ----ccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 77754 7888999999999999985
No 334
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.28 E-value=0.18 Score=54.26 Aligned_cols=97 Identities=15% Similarity=0.158 Sum_probs=69.0
Q ss_pred ccCCCCeEEEECCC-CcHHHHHhcc-CCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 225 RSAGVFQVLDVGCG-VASFSAFLLP-LDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 225 r~~~g~rVLDIGCG-tG~~a~~La~-~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
...||.+|+=+|+| .|..+..+++ .+. .+..+|.+++-.+.|++-|....+...+.....--.+.||+|+..-
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga---~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv-- 237 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGA---EVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV-- 237 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCC---eEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC--
Confidence 45788899999887 4467777776 453 6777899999999999988765444322222221123499998542
Q ss_pred cccccchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 303 VDWHANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 303 ~h~~~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
. ...+....+.||+||.+++.+.+
T Consensus 238 -----~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 -----G-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -----C-hhhHHHHHHHHhcCCEEEEECCC
Confidence 2 56788899999999999998754
No 335
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.78 E-value=0.3 Score=53.34 Aligned_cols=102 Identities=15% Similarity=0.152 Sum_probs=71.4
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEE--------------------------------------EeeecCCcHHHHHHHHH
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTM--------------------------------------SFAPKDGHENQIQFALE 271 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v--------------------------------------~v~~iDis~~~lq~A~e 271 (617)
..++|-=||+|++....+-.+.... -+.+.|++..+++.|+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA 272 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence 4599999999999887765542100 26689999999999987
Q ss_pred h----CCC--cEEEEecCCCCCCCCCCeeEEEecccccccccc---h----HHHHHHHHHhccCCeEEEEEeC
Q 039518 272 R----GIG--AMISALSTKQLPYPSSSFEMVHCSRCRVDWHAN---D----GILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 272 r----g~~--~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d---~----~~~L~el~RvLrPGG~Liis~p 331 (617)
+ |+. +.+.++|+.+++-+-+.+|+|+|+--.-.=..+ . ..+.+.+.+.++--+.+++++.
T Consensus 273 NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 273 NARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 6 554 788899998887544789999998311110011 1 2345566677887888888874
No 336
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=93.77 E-value=0.92 Score=48.08 Aligned_cols=107 Identities=15% Similarity=0.244 Sum_probs=60.5
Q ss_pred eEEeccccccchhhhccCCC---eEEEEeccCCCC--chhHHHHhhccccc---ccccCCCCCCCCCccchhhccccccc
Q 039518 470 NAMDMNAYCGGFAVALNSLP---VWVMNIVPISMK--NTLSAIYNRGILGA---FHDWCEPFSTYPRTYDLLHANHLFSH 541 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~~---v~vmnv~p~~~~--~~l~~~~~RGlig~---~~~~~~~f~typrtyDl~H~~~~~s~ 541 (617)
+|+|.|||+|-.++.|.+.+ -++|-=+...+- ++.. +-+-|+=++ ..|-+++-. ..||+|=++-=|-
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~N-l~~N~~~~~~v~~s~~~~~v~---~kfd~IisNPPfh- 235 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKN-LAANGVENTEVWASNLYEPVE---GKFDLIISNPPFH- 235 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHh-HHHcCCCccEEEEeccccccc---ccccEEEeCCCcc-
Confidence 99999999999999997654 366643332221 1111 222334342 223333333 5899987665554
Q ss_pred cccCCCCCCh----hhHHhhhhhcccCCceEEEe--cChHHHHHHHhhhh
Q 039518 542 YKNRGEVCSL----EDIMLEMDLIIRPQGFIIIR--DEKSLITRIRDLAP 585 (617)
Q Consensus 542 ~~~~~~~c~~----~~~l~e~dRilRP~G~~i~~--d~~~~~~~~~~~~~ 585 (617)
..+=-. +.++-+-=+-|++||-++|= .....-.+++++-.
T Consensus 236 ----~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg 281 (300)
T COG2813 236 ----AGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG 281 (300)
T ss_pred ----CCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC
Confidence 222111 25677778899999977663 33344444444433
No 337
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=93.74 E-value=0.17 Score=43.57 Aligned_cols=94 Identities=16% Similarity=0.236 Sum_probs=56.8
Q ss_pred EEeccccccc--hhhhccCCCeEEEEeccCCCC-chhHHHHhhc-------ccccccccCCC-CCCCC-Cccchhhcccc
Q 039518 471 AMDMNAYCGG--FAVALNSLPVWVMNIVPISMK-NTLSAIYNRG-------ILGAFHDWCEP-FSTYP-RTYDLLHANHL 538 (617)
Q Consensus 471 ~mDm~~~~g~--faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG-------lig~~~~~~~~-f~typ-rtyDl~H~~~~ 538 (617)
++|+|||.|. +.+.+......+.. .|.. ..+...-.+. +-.+..+.... ++.-. .+||++ ....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 9999999998 56666665434444 2322 2222222221 12233333331 23212 389999 6666
Q ss_pred ccccccCCCCCChhhHHhhhhhcccCCceEEEecCh
Q 039518 539 FSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK 574 (617)
Q Consensus 539 ~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~ 574 (617)
...+ .. ...++-|+-|+|+|+|.+++.+..
T Consensus 128 ~~~~---~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHL---LP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhc---CC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 5544 22 778999999999999999998543
No 338
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=93.71 E-value=0.076 Score=56.81 Aligned_cols=121 Identities=17% Similarity=0.228 Sum_probs=63.4
Q ss_pred HhccCCCCCeeeEEeccccccchhhh--ccCCCeEEEEeccCCCC-chhHHH----Hhhcccc--cc-cccCCCCCCCCC
Q 039518 459 QLMNVNETEIRNAMDMNAYCGGFAVA--LNSLPVWVMNIVPISMK-NTLSAI----YNRGILG--AF-HDWCEPFSTYPR 528 (617)
Q Consensus 459 ~~~~~~~~~~Rn~mDm~~~~g~faa~--l~~~~v~vmnv~p~~~~-~~l~~~----~~RGlig--~~-~~~~~~f~typr 528 (617)
++.+++.+. .|||.+||.|+|... +....|.- .|.. ..+..+ -.-|+-. ++ .|-. .++.-+.
T Consensus 176 ~l~~~~~g~--~vLDp~cGtG~~lieaa~~~~~v~g-----~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~-~l~~~~~ 247 (329)
T TIGR01177 176 NLARVTEGD--RVLDPFCGTGGFLIEAGLMGAKVIG-----CDIDWKMVAGARINLEHYGIEDFFVKRGDAT-KLPLSSE 247 (329)
T ss_pred HHhCCCCcC--EEEECCCCCCHHHHHHHHhCCeEEE-----EcCCHHHHHHHHHHHHHhCCCCCeEEecchh-cCCcccC
Confidence 333455553 799999999999543 33333322 2333 222221 1224433 11 1211 1222136
Q ss_pred ccchhhcccccccccc-CC--CCCChhhHHhhhhhcccCCceEEEecChHHHHHHHhhhhcCCc
Q 039518 529 TYDLLHANHLFSHYKN-RG--EVCSLEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLW 589 (617)
Q Consensus 529 tyDl~H~~~~~s~~~~-~~--~~c~~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~~~W 589 (617)
+||+|=++--|..-.. .. .......+|-|+-|+|+|||++++--..+ ..++++++.--|
T Consensus 248 ~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 248 SVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred CCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 8999887633321000 00 11234689999999999999987753221 144455666666
No 339
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=93.67 E-value=0.39 Score=52.76 Aligned_cols=132 Identities=20% Similarity=0.250 Sum_probs=79.8
Q ss_pred CcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEE-EEecCCCCC---CCCCCee
Q 039518 223 NLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMI-SALSTKQLP---YPSSSFE 294 (617)
Q Consensus 223 ~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~-~~~d~~~Lp---f~d~sFD 294 (617)
.+..++|.||||+.+..|.=+.+++..--..-.|.+.|.+...+....++ |+...+ ...|...+| ++. +||
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fD 314 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFD 314 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccc
Confidence 35668999999999999954444444311111466778887777655443 665443 344555554 444 899
Q ss_pred EEE----eccccccc-------cc----------chHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHH
Q 039518 295 MVH----CSRCRVDW-------HA----------NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTA 353 (617)
Q Consensus 295 lV~----~s~~l~h~-------~~----------d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~ 353 (617)
=|+ |+..-.-. .. -..++|..+..++++||+|+.++-.+.....+.. +..++++
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~v-----V~yaL~K 389 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAV-----VDYALKK 389 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHH-----HHHHHHh
Confidence 997 33211110 00 0245788899999999999999865554433322 4555555
Q ss_pred c-CceEEE
Q 039518 354 M-CWKLIA 360 (617)
Q Consensus 354 ~-gw~~v~ 360 (617)
. .++++-
T Consensus 390 ~p~~kL~p 397 (460)
T KOG1122|consen 390 RPEVKLVP 397 (460)
T ss_pred CCceEecc
Confidence 5 555554
No 340
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=93.53 E-value=0.019 Score=50.59 Aligned_cols=95 Identities=13% Similarity=0.142 Sum_probs=36.9
Q ss_pred EEECCCCcHHHHHhccCCCcE--EEeeecCCcH---HHHHHHHHhCC--CcEEEEecCCCC-C-CCCCCeeEEEeccccc
Q 039518 233 LDVGCGVASFSAFLLPLDIQT--MSFAPKDGHE---NQIQFALERGI--GAMISALSTKQL-P-YPSSSFEMVHCSRCRV 303 (617)
Q Consensus 233 LDIGCGtG~~a~~La~~gv~~--v~v~~iDis~---~~lq~A~erg~--~~~~~~~d~~~L-p-f~d~sFDlV~~s~~l~ 303 (617)
||||+..|..+..+++.-... ..+..+|..+ ...+..++.+. .+.+..++..+. + ++.++||+|+.- .-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iD-g~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFID-GD- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEE-S--
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEEC-CC-
Confidence 689999998888877641111 1455566666 33334443332 366666665322 1 235789999853 22
Q ss_pred ccccchHHHHHHHHHhccCCeEEEEE
Q 039518 304 DWHANDGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 304 h~~~d~~~~L~el~RvLrPGG~Liis 329 (617)
|-.+.....+..+.+.|+|||.+++-
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 32235566889999999999999884
No 341
>PRK13699 putative methylase; Provisional
Probab=93.50 E-value=0.23 Score=50.57 Aligned_cols=83 Identities=11% Similarity=0.115 Sum_probs=51.0
Q ss_pred EEEecCCCC--CCCCCCeeEEEeccccc----c-----cc-----cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCCh
Q 039518 278 ISALSTKQL--PYPSSSFEMVHCSRCRV----D-----WH-----ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYP 341 (617)
Q Consensus 278 ~~~~d~~~L--pf~d~sFDlV~~s~~l~----h-----~~-----~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~ 341 (617)
+..+|..++ .++++++|+|++.--.. . +. +-....+.|++|+|||||.+++... +. .
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~---~~----~ 76 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYG---WN----R 76 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEec---cc----c
Confidence 444554322 35688888888762110 0 00 1124688999999999999987432 11 0
Q ss_pred hhHHHHHHHHHHcCceEEEEeeeeEEEeeccc
Q 039518 342 LIWDKLVNLTTAMCWKLIARKIQTAIWIKEEN 373 (617)
Q Consensus 342 ~~W~~le~La~~~gw~~v~~~~~~~IwqKp~~ 373 (617)
...+....+..||.+. +..||.|+..
T Consensus 77 --~~~~~~al~~~GF~l~----~~IiW~K~~~ 102 (227)
T PRK13699 77 --VDRFMAAWKNAGFSVV----GHLVFTKNYT 102 (227)
T ss_pred --HHHHHHHHHHCCCEEe----eEEEEECCCC
Confidence 2335566788899865 4668999753
No 342
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=93.27 E-value=0.061 Score=55.00 Aligned_cols=94 Identities=13% Similarity=0.253 Sum_probs=64.7
Q ss_pred eEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhccc-ccccccCCCCC---CCC-Cccchhhccccccccc
Q 039518 470 NAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGIL-GAFHDWCEPFS---TYP-RTYDLLHANHLFSHYK 543 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGli-g~~~~~~~~f~---typ-rtyDl~H~~~~~s~~~ 543 (617)
.|||+|||-|.++-.|.... -+|.-.|.. .-+.++-.+.+. |+.-||-..-. .-. -+||.|=|..+..|+
T Consensus 62 ~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv- 137 (243)
T COG2227 62 RVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV- 137 (243)
T ss_pred eEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc-
Confidence 48999999999999998877 455556666 666666544432 22222221110 011 478888888888776
Q ss_pred cCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 544 NRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 544 ~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
=+.+.++-+..+.|||||.++++.
T Consensus 138 -----~dp~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 138 -----PDPESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred -----CCHHHHHHHHHHHcCCCcEEEEec
Confidence 234579999999999999999984
No 343
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=93.18 E-value=0.11 Score=52.52 Aligned_cols=107 Identities=8% Similarity=0.048 Sum_probs=59.5
Q ss_pred HHHHhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhccccccc--------------ccC
Q 039518 456 HYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGILGAFH--------------DWC 520 (617)
Q Consensus 456 ~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGlig~~~--------------~~~ 520 (617)
+|...+.+..+ ..|||.|||.|--|.+|.++..=|.-|=..... .. ++-++|+..... -++
T Consensus 28 ~~~~~~~~~~~--~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~--~~~~~~l~~~~~~~~~~~~~~~~~v~~~~ 103 (218)
T PRK13255 28 KYWPALALPAG--SRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQ--FFAENGLTPQTRQSGEFEHYQAGEITIYC 103 (218)
T ss_pred HHHHhhCCCCC--CeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHH--HHHHcCCCccccccccccccccCceEEEE
Confidence 34443333333 389999999999999999886544433332222 22 345677643211 122
Q ss_pred CCCCCC---C-CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEE
Q 039518 521 EPFSTY---P-RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIII 570 (617)
Q Consensus 521 ~~f~ty---p-rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~ 570 (617)
.-+..+ + .+||+|-...+|.+. ....-..++-.|-++|+|||.+++
T Consensus 104 ~D~~~l~~~~~~~fd~v~D~~~~~~l----~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 104 GDFFALTAADLADVDAVYDRAALIAL----PEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CcccCCCcccCCCeeEEEehHhHhhC----CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 212111 1 255665544444321 222224789999999999996444
No 344
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=93.09 E-value=0.066 Score=54.33 Aligned_cols=97 Identities=18% Similarity=0.331 Sum_probs=64.1
Q ss_pred CCCCCeeeEEeccccccchhhhccC-CC---eEEEEeccCCCCchhHHHHhh-cccccccccCCCCCCCCCccchhhccc
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNS-LP---VWVMNIVPISMKNTLSAIYNR-GILGAFHDWCEPFSTYPRTYDLLHANH 537 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~-~~---v~vmnv~p~~~~~~l~~~~~R-Glig~~~~~~~~f~typrtyDl~H~~~ 537 (617)
..+..+++|+|+|+|.|.|++++.. .| +.|+ |-|..+..+.+. .+--+=||. |.++|. ||++...+
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~-----Dlp~v~~~~~~~~rv~~~~gd~---f~~~P~-~D~~~l~~ 166 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVF-----DLPEVIEQAKEADRVEFVPGDF---FDPLPV-ADVYLLRH 166 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEE-----E-HHHHCCHHHTTTEEEEES-T---TTCCSS-ESEEEEES
T ss_pred ccccCccEEEeccCcchHHHHHHHHHCCCCcceee-----ccHhhhhccccccccccccccH---Hhhhcc-ccceeeeh
Confidence 6778899999999999999999953 22 3444 333333333331 122222333 355667 99999999
Q ss_pred cccccccCCCCCChhhHHhhhhhcccCC--ceEEEec
Q 039518 538 LFSHYKNRGEVCSLEDIMLEMDLIIRPQ--GFIIIRD 572 (617)
Q Consensus 538 ~~s~~~~~~~~c~~~~~l~e~dRilRP~--G~~i~~d 572 (617)
++-.|.. =....||--+=+.|+|| |.++|-|
T Consensus 167 vLh~~~d----~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 167 VLHDWSD----EDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp SGGGS-H----HHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred hhhhcch----HHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 9987721 22347888999999999 9999964
No 345
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=93.03 E-value=0.14 Score=47.85 Aligned_cols=95 Identities=18% Similarity=0.149 Sum_probs=55.4
Q ss_pred CCCCeEEEECCCCcHHHHHhcc-----CCCcEEEeeecCCcHHHHHHHHHhCCC--------cEEEEecCCCCCCCCCCe
Q 039518 227 AGVFQVLDVGCGVASFSAFLLP-----LDIQTMSFAPKDGHENQIQFALERGIG--------AMISALSTKQLPYPSSSF 293 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~-----~gv~~v~v~~iDis~~~lq~A~erg~~--------~~~~~~d~~~Lpf~d~sF 293 (617)
.+..+|+|+|||.|.++..|+. . ....+.++|.++..++.+.++... ..+...+....+ .....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 100 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPP 100 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCC
Confidence 3456799999999999999987 3 233677789888888877765221 112222221111 14456
Q ss_pred eEEEecccccccccchHH-HHHHHHHhccCCeEEEEEeC
Q 039518 294 EMVHCSRCRVDWHANDGI-LLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 294 DlV~~s~~l~h~~~d~~~-~L~el~RvLrPGG~Liis~p 331 (617)
++++.- |--.+... +|+-..+ |+-.+++..|
T Consensus 101 ~~~vgL----HaCG~Ls~~~l~~~~~---~~~~~l~~vp 132 (141)
T PF13679_consen 101 DILVGL----HACGDLSDRALRLFIR---PNARFLVLVP 132 (141)
T ss_pred eEEEEe----ecccchHHHHHHHHHH---cCCCEEEEcC
Confidence 777632 33334433 3444433 6666666555
No 346
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=92.97 E-value=0.28 Score=50.71 Aligned_cols=127 Identities=13% Similarity=0.193 Sum_probs=81.0
Q ss_pred CCeeeEEeccccccchhhhccCC-C-e--EEEEeccCCCC-chhHHHH----hhc--ccccccccCCCCCCCCCccchhh
Q 039518 466 TEIRNAMDMNAYCGGFAVALNSL-P-V--WVMNIVPISMK-NTLSAIY----NRG--ILGAFHDWCEPFSTYPRTYDLLH 534 (617)
Q Consensus 466 ~~~Rn~mDm~~~~g~faa~l~~~-~-v--~vmnv~p~~~~-~~l~~~~----~RG--lig~~~~~~~~f~typrtyDl~H 534 (617)
.....|+|+|||.|..+=+|..+ + + --+-+-+.... .+-.+.+ ||- +=+=+.+|..++.. .+||+|=
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~--~~fD~Ii 120 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF--ASFDLII 120 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc--cccCEEE
Confidence 33789999999999776666554 2 3 22222222222 1111111 222 12333456666553 4688887
Q ss_pred ccccccccc------------cCCCCCChhhHHhhhhhcccCCceEEEecChHHHHHHHhhhhcCCceEEEe
Q 039518 535 ANHLFSHYK------------NRGEVCSLEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELH 594 (617)
Q Consensus 535 ~~~~~s~~~------------~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~ 594 (617)
|+-=|=.-. .....|.+++++-=-=++|+|||++.+=-..+.+.++-+++++++|+.+..
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~i 192 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRI 192 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceEE
Confidence 764332100 124457788888888999999999999999999999999999999997544
No 347
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.96 E-value=0.47 Score=48.47 Aligned_cols=111 Identities=14% Similarity=0.275 Sum_probs=68.4
Q ss_pred cceecCCCCCc-ccCChhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHH
Q 039518 191 QLWWFPGGGTH-FKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFA 269 (617)
Q Consensus 191 d~~~Fpgggt~-F~~~a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A 269 (617)
.+|.+|.+--- -.-++..|+..+.++|....+.+. .++.++||||.|.--+-..+--+ --..++++.|+++..++.|
T Consensus 41 ~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~-~~~i~~LDIGvGAnCIYPliG~~-eYgwrfvGseid~~sl~sA 118 (292)
T COG3129 41 RYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIP-GKNIRILDIGVGANCIYPLIGVH-EYGWRFVGSEIDSQSLSSA 118 (292)
T ss_pred eEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCC-cCceEEEeeccCcccccccccce-eecceeecCccCHHHHHHH
Confidence 34666665411 124667899999999987666543 56778999998876543333222 1234788999999998888
Q ss_pred HHh-----CCC--cEEEEe-cC----CCCCCCCCCeeEEEeccccc
Q 039518 270 LER-----GIG--AMISAL-ST----KQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 270 ~er-----g~~--~~~~~~-d~----~~Lpf~d~sFDlV~~s~~l~ 303 (617)
+.. +.. +.+... +. ..+--.++.||++.|+--+|
T Consensus 119 ~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh 164 (292)
T COG3129 119 KAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFH 164 (292)
T ss_pred HHHHHcCcchhhheeEEeccCccccccccccccceeeeEecCCCcc
Confidence 754 221 222221 11 11112357899999986444
No 348
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=92.96 E-value=0.29 Score=51.88 Aligned_cols=95 Identities=16% Similarity=0.256 Sum_probs=50.8
Q ss_pred ChhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh-----CCC--cE
Q 039518 205 GAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER-----GIG--AM 277 (617)
Q Consensus 205 ~a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er-----g~~--~~ 277 (617)
++..|+..|.+++...... ....-++||||+|...+-..|..+- ....+.+.|+++..++.|++. ++. +.
T Consensus 81 ~R~nYi~~i~DlL~~~~~~--~~~~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~ 157 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPG--IPEKVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESRIE 157 (299)
T ss_dssp HHHHHHHHHHHHHT--TCG--CS---EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEE
T ss_pred hhHHHHHHHHHHhhccccc--cccceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccceE
Confidence 4568988898888653332 1225579999999986655554331 234788889999999999864 222 44
Q ss_pred EEEecC-----CCCCCCCCCeeEEEecccc
Q 039518 278 ISALST-----KQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 278 ~~~~d~-----~~Lpf~d~sFDlV~~s~~l 302 (617)
+..... ..+-.+++.||+..|+--+
T Consensus 158 l~~~~~~~~i~~~i~~~~e~~dftmCNPPF 187 (299)
T PF05971_consen 158 LRKQKNPDNIFDGIIQPNERFDFTMCNPPF 187 (299)
T ss_dssp EEE--ST-SSTTTSTT--S-EEEEEE----
T ss_pred EEEcCCccccchhhhcccceeeEEecCCcc
Confidence 433321 1122234689999998533
No 349
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=92.92 E-value=0.011 Score=51.67 Aligned_cols=92 Identities=16% Similarity=0.187 Sum_probs=54.2
Q ss_pred EEeccccccchhhhccCCC--eEEEEeccCCCC-chhHHHHhhc----c-cccccccCCCCCCCCCccchhhcccc-ccc
Q 039518 471 AMDMNAYCGGFAVALNSLP--VWVMNIVPISMK-NTLSAIYNRG----I-LGAFHDWCEPFSTYPRTYDLLHANHL-FSH 541 (617)
Q Consensus 471 ~mDm~~~~g~faa~l~~~~--v~vmnv~p~~~~-~~l~~~~~RG----l-ig~~~~~~~~f~typrtyDl~H~~~~-~s~ 541 (617)
|||+|||.|....+|.+.- ---..+.-.|-. +.|..+.++. + +-.++.=.+.++..-.+||+|=+.++ |.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999998886431 011334444544 6777776666 2 11111111222322369999998766 443
Q ss_pred cccCCCCCChhhHHhhhhhcccCCc
Q 039518 542 YKNRGEVCSLEDIMLEMDLIIRPQG 566 (617)
Q Consensus 542 ~~~~~~~c~~~~~l~e~dRilRP~G 566 (617)
-+.=.++.+|=++=++|||||
T Consensus 81 ----~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 ----LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp ----SSHHHHHHHHHHHHHTEEEEE
T ss_pred ----CCHHHHHHHHHHHHHHhCCCC
Confidence 344456789999999999998
No 350
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=92.81 E-value=0.31 Score=48.86 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=26.2
Q ss_pred EEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHH
Q 039518 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFA 269 (617)
Q Consensus 232 VLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A 269 (617)
+.|||||.|.+...|+...+.. .+-+.+|-....+..
T Consensus 64 faDIGCGyGGLlv~Lsp~fPdt-LiLGmEIR~KVsdYV 100 (249)
T KOG3115|consen 64 FADIGCGYGGLLMKLAPKFPDT-LILGMEIRDKVSDYV 100 (249)
T ss_pred EEeeccCccchhhhccccCccc-eeeeehhhHHHHHHH
Confidence 8999999999999999887654 344555544433333
No 351
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=92.80 E-value=0.051 Score=54.02 Aligned_cols=122 Identities=11% Similarity=0.142 Sum_probs=73.2
Q ss_pred eeEEeccccccchhhhcc--CCCeEEEEeccCCCC--chhHHHHhhcccccccccCCCCCC----C-CCccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALN--SLPVWVMNIVPISMK--NTLSAIYNRGILGAFHDWCEPFST----Y-PRTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~--~~~v~vmnv~p~~~~--~~l~~~~~RGlig~~~~~~~~f~t----y-prtyDl~H~~~~~ 539 (617)
..++|+|||.|.|.+++. ..+.-++-|-....- ..+.-+..+||--+.--.+.+... . |.+.|.||- .|
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i--~F 96 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYI--NF 96 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEE--ES
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEE--eC
Confidence 389999999999999884 333333333333322 556667777874444444444331 1 367777772 22
Q ss_pred c-ccc--cCCCCCCh-hhHHhhhhhcccCCceEEEe-cChHHHHHHHhhhhcC--CceEE
Q 039518 540 S-HYK--NRGEVCSL-EDIMLEMDLIIRPQGFIIIR-DEKSLITRIRDLAPKF--LWDVE 592 (617)
Q Consensus 540 s-~~~--~~~~~c~~-~~~l~e~dRilRP~G~~i~~-d~~~~~~~~~~~~~~~--~W~~~ 592 (617)
. -|- ...+|-.+ ...|-++-|+|+|||.+.++ |..+..+.+.+.+... .++..
T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 2 111 11224444 47888999999999999986 7777777777777664 55544
No 352
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=92.65 E-value=0.2 Score=48.59 Aligned_cols=66 Identities=21% Similarity=0.189 Sum_probs=43.8
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCC--CCCCC-eeEEEec
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLP--YPSSS-FEMVHCS 299 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lp--f~d~s-FDlV~~s 299 (617)
.|||+.||.|..+..+++... .+.++|+++..++.|+.+ |+ ++.+..+|..++. +..+. ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 499999999999999999865 456679999999988876 54 4788888854331 11122 8999986
No 353
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=92.62 E-value=0.19 Score=50.67 Aligned_cols=29 Identities=7% Similarity=-0.255 Sum_probs=22.8
Q ss_pred eeEEeccccccchhhhccCCC--eEEEEecc
Q 039518 469 RNAMDMNAYCGGFAVALNSLP--VWVMNIVP 497 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~--v~vmnv~p 497 (617)
..|||.|||.|-.|.+|.++. |.-+-++|
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~ 66 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSE 66 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCH
Confidence 589999999999999998874 55554444
No 354
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=92.57 E-value=0.16 Score=51.80 Aligned_cols=130 Identities=16% Similarity=0.244 Sum_probs=68.7
Q ss_pred eeeEEeccccccc----hhhhccC-CCeEEEEeccCCCCchhHHHHhhcc---ccc-ccccCCCCCC----C-CCccchh
Q 039518 468 IRNAMDMNAYCGG----FAVALNS-LPVWVMNIVPISMKNTLSAIYNRGI---LGA-FHDWCEPFST----Y-PRTYDLL 533 (617)
Q Consensus 468 ~Rn~mDm~~~~g~----faa~l~~-~~v~vmnv~p~~~~~~l~~~~~RGl---ig~-~~~~~~~f~t----y-prtyDl~ 533 (617)
-++|||+|||+|. +|+++.. -.|..+=+-|.-..-.-+.+-+-|+ |-+ ..|..+.++. . ..+||+|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 5799999998885 3444432 2344443333211111112223343 111 1233333222 1 2589999
Q ss_pred hccccccccccCCCCCChhhHHhhhhhcccCCceEEEec---------C----h----HHHHHHHh----hhhcCCceEE
Q 039518 534 HANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD---------E----K----SLITRIRD----LAPKFLWDVE 592 (617)
Q Consensus 534 H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d---------~----~----~~~~~~~~----~~~~~~W~~~ 592 (617)
-.+.-=..| ..++-++=|.|||||.+|+.+ . . .....+++ +...=+|++.
T Consensus 149 fiDa~k~~y---------~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~ 219 (234)
T PLN02781 149 FVDADKPNY---------VHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEIS 219 (234)
T ss_pred EECCCHHHH---------HHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEE
Confidence 755433333 356677789999999999631 1 0 12233433 4445567776
Q ss_pred EeeccccCCCceeEEEEEec
Q 039518 593 LHSLENREKKMESVLICRKK 612 (617)
Q Consensus 593 ~~~~e~~~~~~~~~l~~~k~ 612 (617)
+... .+.++|++|.
T Consensus 220 ~lp~------gdG~~i~~k~ 233 (234)
T PLN02781 220 QISI------GDGVTLCRRL 233 (234)
T ss_pred EEEe------CCccEEEEEe
Confidence 6643 3678888875
No 355
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=92.29 E-value=0.19 Score=51.30 Aligned_cols=108 Identities=18% Similarity=0.255 Sum_probs=61.2
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh-------ccccc-ccccCCCCCCCCCccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR-------GILGA-FHDWCEPFSTYPRTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R-------Glig~-~~~~~~~f~typrtyDl~H~~~~~ 539 (617)
++|||+|||.|+|.-.|...++- .|.-.|.. ++|.--+.. +..-+ +.+|-+-.+ |++-++-.|
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga~--~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~------d~~~~Dvsf 148 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGAK--EVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFP------DFATFDVSF 148 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCCC--EEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCC------CceeeeEEE
Confidence 58999999999999999877541 12222333 344332222 11111 224444322 444444333
Q ss_pred cccccCCCCCChhhHHhhhhhcccCCceEEE-------------------ecC---hHHHHHHHhhhhcCCceEEEe
Q 039518 540 SHYKNRGEVCSLEDIMLEMDLIIRPQGFIII-------------------RDE---KSLITRIRDLAPKFLWDVELH 594 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~-------------------~d~---~~~~~~~~~~~~~~~W~~~~~ 594 (617)
. ++..+|-.|.+.|+| |.+|+ +|. ..+++++...+..+-|++.-.
T Consensus 149 i---------S~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (228)
T TIGR00478 149 I---------SLISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKI 215 (228)
T ss_pred e---------ehHhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeE
Confidence 2 112357777788888 66664 343 366777777788888886544
No 356
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=92.25 E-value=0.27 Score=50.92 Aligned_cols=109 Identities=14% Similarity=0.174 Sum_probs=65.3
Q ss_pred CCCCeeeEEeccccccchhhhccC----------CCeEEEEeccCCCCchhHHHHhhccc-ccccc----c-C---CCCC
Q 039518 464 NETEIRNAMDMNAYCGGFAVALNS----------LPVWVMNIVPISMKNTLSAIYNRGIL-GAFHD----W-C---EPFS 524 (617)
Q Consensus 464 ~~~~~Rn~mDm~~~~g~faa~l~~----------~~v~vmnv~p~~~~~~l~~~~~RGli-g~~~~----~-~---~~f~ 524 (617)
+.+.-=.+|||.+|+|--|=.+++ ..|.|.-+ .+++|.+.-.|-.= +..-+ | | |.+|
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Di----np~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp 172 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDI----NPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP 172 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeC----CHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC
Confidence 344457899999999865544432 34554433 23788776666421 11212 2 2 3344
Q ss_pred CCC-CccchhhccccccccccCCCCCC-hhhHHhhhhhcccCCceEEEecChHHH-HHHHhhh
Q 039518 525 TYP-RTYDLLHANHLFSHYKNRGEVCS-LEDIMLEMDLIIRPQGFIIIRDEKSLI-TRIRDLA 584 (617)
Q Consensus 525 typ-rtyDl~H~~~~~s~~~~~~~~c~-~~~~l~e~dRilRP~G~~i~~d~~~~~-~~~~~~~ 584 (617)
|| .+||+.-.+ |. ...|. ++..|-|+-|||+|||-|.+=+-..+- +.++.+.
T Consensus 173 -Fdd~s~D~yTia--fG-----IRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy 227 (296)
T KOG1540|consen 173 -FDDDSFDAYTIA--FG-----IRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFY 227 (296)
T ss_pred -CCCCcceeEEEe--cc-----eecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHH
Confidence 44 899986532 22 23343 678999999999999998876554443 3444443
No 357
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=92.19 E-value=0.29 Score=54.34 Aligned_cols=113 Identities=15% Similarity=0.205 Sum_probs=60.3
Q ss_pred ccCCCCCeeeEEeccccccchhhhccCC--CeEEEEeccCCCC-chhHHH---Hhh-cccccc----cccCCCCCC--CC
Q 039518 461 MNVNETEIRNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMK-NTLSAI---YNR-GILGAF----HDWCEPFST--YP 527 (617)
Q Consensus 461 ~~~~~~~~Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~-~~l~~~---~~R-Glig~~----~~~~~~f~t--yp 527 (617)
|+...| .+|+||+||.||++.++... +--| +-.|-. +.+..+ ++| |+--.. .|..+. +. -+
T Consensus 234 L~~~~g--~~VLDlcag~G~kt~~la~~~~~~~v---~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~-~~~~~~ 307 (426)
T TIGR00563 234 LAPQNE--ETILDACAAPGGKTTHILELAPQAQV---VALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGP-SQWAEN 307 (426)
T ss_pred hCCCCC--CeEEEeCCCccHHHHHHHHHcCCCeE---EEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccc-cccccc
Confidence 445555 58999999999999777542 2222 222333 333333 333 431001 121111 11 13
Q ss_pred Cccchhhcc------ccccccccCCCCC----C-------hhhHHhhhhhcccCCceEEEe-------cChHHHHHH
Q 039518 528 RTYDLLHAN------HLFSHYKNRGEVC----S-------LEDIMLEMDLIIRPQGFIIIR-------DEKSLITRI 580 (617)
Q Consensus 528 rtyDl~H~~------~~~s~~~~~~~~c----~-------~~~~l~e~dRilRP~G~~i~~-------d~~~~~~~~ 580 (617)
.+||.|-.+ |++..- .+..-. . -..+|-++=|+|||||.+|++ ++.+++...
T Consensus 308 ~~fD~VllDaPcSg~G~~~~~-p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~ 383 (426)
T TIGR00563 308 EQFDRILLDAPCSATGVIRRH-PDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAF 383 (426)
T ss_pred cccCEEEEcCCCCCCcccccC-cchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHH
Confidence 679999754 333210 000000 0 136889999999999999998 455555443
No 358
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=92.12 E-value=0.18 Score=46.43 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=32.4
Q ss_pred EEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh
Q 039518 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER 272 (617)
Q Consensus 232 VLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er 272 (617)
+||||||.|.++..+++.+... .+.++|.++.+.+.++++
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~-~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEG-RVIAFEPLPDAYEILEEN 41 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCC-EEEEEecCHHHHHHHHHH
Confidence 8999999999999998876542 567778888888777654
No 359
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=91.89 E-value=2.9 Score=42.11 Aligned_cols=134 Identities=11% Similarity=0.079 Sum_probs=79.6
Q ss_pred CCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcH----HHHHHHHHhCCCcEEEEecCCCCC----CCCCCe
Q 039518 222 GNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHE----NQIQFALERGIGAMISALSTKQLP----YPSSSF 293 (617)
Q Consensus 222 ~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~----~~lq~A~erg~~~~~~~~d~~~Lp----f~d~sF 293 (617)
..+.+.+|.+||=+|+.+|....++..--... .+.+++.++ +.+..|.+|. ++.-...|+ +.| .--+..
T Consensus 70 ~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G-~iYaVEfs~R~~reLl~~a~~R~-Ni~PIL~DA-~~P~~Y~~~Ve~V 146 (231)
T COG1889 70 KNFPIKEGSKVLYLGAASGTTVSHVSDIVGEG-RIYAVEFSPRPMRELLDVAEKRP-NIIPILEDA-RKPEKYRHLVEKV 146 (231)
T ss_pred ccCCcCCCCEEEEeeccCCCcHhHHHhccCCC-cEEEEEecchhHHHHHHHHHhCC-Cceeeeccc-CCcHHhhhhcccc
Confidence 34678899999999999998887776541111 233444444 4455666653 233333444 233 123458
Q ss_pred eEEEecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCC-CCChhhHHHHHHHHHHcCceEEEE
Q 039518 294 EMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKD-KDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 294 DlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~-~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
|+|++- +. -+.....+..++...|++||+++++.-...-+. .+....+++-..-++..+|+++..
T Consensus 147 Dviy~D-VA--Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~ 212 (231)
T COG1889 147 DVIYQD-VA--QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEV 212 (231)
T ss_pred cEEEEe-cC--CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEE
Confidence 999853 11 122345688899999999998888753222222 222334554445556778887764
No 360
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=91.88 E-value=0.81 Score=47.31 Aligned_cols=129 Identities=16% Similarity=0.133 Sum_probs=73.6
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
+..+|||||||.=-++.........+ .+.+.|++..++++...- +.+..+.+.|...-+ +....|+.+..-.+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a-~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~l- 181 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGA-TYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKTL- 181 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT--EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET-H-
T ss_pred CCchhhhhhccCCceehhhcccCCCc-EEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHHH-
Confidence 35679999999999999888765444 788999999999887654 667777777764433 45679999865433
Q ss_pred ccccch-HHHHHHHHHhccCCeEEEEEeCCCCCCCCCCh--h-hHHHHHHHHHHcCceEEE
Q 039518 304 DWHAND-GILLKEVDRVLRPNGYFVYSAPPAYRKDKDYP--L-IWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 304 h~~~d~-~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~--~-~W~~le~La~~~gw~~v~ 360 (617)
|..+.. ...-.++.+.++ .=.+++|.|...-.....+ . .-..++.++..-+|.+-.
T Consensus 182 p~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~ 241 (251)
T PF07091_consen 182 PCLERQRRGAGLELLDALR-SPHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDR 241 (251)
T ss_dssp HHHHHHSTTHHHHHHHHSC-ESEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEE
T ss_pred HHHHHHhcchHHHHHHHhC-CCeEEEeccccccccCccccccCHHHHHHHhcccCCceeee
Confidence 333111 112223333332 2357777775443332222 1 112288888888887433
No 361
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=91.78 E-value=0.098 Score=55.34 Aligned_cols=98 Identities=12% Similarity=0.181 Sum_probs=60.6
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh------c--ccccccccCCCCCCCCCcc----c-hhh
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR------G--ILGAFHDWCEPFSTYPRTY----D-LLH 534 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R------G--lig~~~~~~~~f~typrty----D-l~H 534 (617)
.+|+|+|||.|.++..|.+.-.=..++++.|-. .-|..+.++ + +.++..|.++.++. |..+ + ++.
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~-~~~~~~~~~~~~~ 143 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLAL-PPEPAAGRRLGFF 143 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhh-hcccccCCeEEEE
Confidence 479999999999988886541002356777877 666666654 2 23455666655432 3333 2 233
Q ss_pred ccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 535 ANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 535 ~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
..+.|.++ ..=....+|-++=+.|+|||.++|.
T Consensus 144 ~gs~~~~~----~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 144 PGSTIGNF----TPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred ecccccCC----CHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 22333322 1222347899999999999999984
No 362
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=91.72 E-value=4.8 Score=41.52 Aligned_cols=132 Identities=15% Similarity=0.132 Sum_probs=70.4
Q ss_pred CCCeEEEECCCCc-HHHHHhccCCCcEEEeeecCCcHHHHHH----HHHhCCCcEEEEecC-CCCCC-CCCCeeEEEecc
Q 039518 228 GVFQVLDVGCGVA-SFSAFLLPLDIQTMSFAPKDGHENQIQF----ALERGIGAMISALST-KQLPY-PSSSFEMVHCSR 300 (617)
Q Consensus 228 ~g~rVLDIGCGtG-~~a~~La~~gv~~v~v~~iDis~~~lq~----A~erg~~~~~~~~d~-~~Lpf-~d~sFDlV~~s~ 300 (617)
.|++||=+|=..- +++..|... .. .|+-+|+++..+++ |.+.|.++.....|+ ..||- -.++||++++--
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~-~~--~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP 120 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGL-PK--RITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDP 120 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT---S--EEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE--
T ss_pred cCCEEEEEcCCcHHHHHHHhhCC-CC--eEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCC
Confidence 4667999996655 334444322 22 56668999998864 455688888888886 33442 147899999753
Q ss_pred cccccc-cchHHHHHHHHHhccCCe-EEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEeeeeEEEe
Q 039518 301 CRVDWH-ANDGILLKEVDRVLRPNG-YFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWI 369 (617)
Q Consensus 301 ~l~h~~-~d~~~~L~el~RvLrPGG-~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~~~~~Iwq 369 (617)
++. +-...++......||.-| ..+++-. +.+.....|..+++.+.++|+-+...-.+...+.
T Consensus 121 ---PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~----~~~~s~~~~~~~Q~~l~~~gl~i~dii~~Fn~Y~ 184 (243)
T PF01861_consen 121 ---PYTPEGLKLFLSRGIEALKGEGCAGYFGFT----HKEASPDKWLEVQRFLLEMGLVITDIIPDFNRYE 184 (243)
T ss_dssp ----SSHHHHHHHHHHHHHTB-STT-EEEEEE-----TTT--HHHHHHHHHHHHTS--EEEEEEEEEEEB-
T ss_pred ---CCCHHHHHHHHHHHHHHhCCCCceEEEEEe----cCcCcHHHHHHHHHHHHHCCcCHHHHHhhhcccc
Confidence 333 234568888889998766 4444321 2222345588999999999998877665554443
No 363
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=91.71 E-value=0.47 Score=49.34 Aligned_cols=103 Identities=9% Similarity=0.104 Sum_probs=53.6
Q ss_pred CCCeeeEEeccccccchhhhccCCC-eEEEEeccCCCC-chhHHHHhh-----c-c----cccc-cccCCCCCCCCCccc
Q 039518 465 ETEIRNAMDMNAYCGGFAVALNSLP-VWVMNIVPISMK-NTLSAIYNR-----G-I----LGAF-HDWCEPFSTYPRTYD 531 (617)
Q Consensus 465 ~~~~Rn~mDm~~~~g~faa~l~~~~-v~vmnv~p~~~~-~~l~~~~~R-----G-l----ig~~-~~~~~~f~typrtyD 531 (617)
..+-++||++|||.|+++..+.+.+ +- +++-.+.. +.+..+-+. | + +-+. .|-.+-....+++||
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~~~--~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yD 147 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKSVE--KATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFD 147 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCCcc--eEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCcc
Confidence 3345699999999999998887654 32 22222222 222222221 0 0 0011 111111112367899
Q ss_pred hhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 532 LLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 532 l~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
+|=.+.... + .....--....+-.+-|+|+|||.+++.
T Consensus 148 vIi~D~~~~-~-~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 148 VIIVDSTDP-V-GPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEEEeCCCC-C-CcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 986543221 1 0011111235566788999999999986
No 364
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=91.55 E-value=0.3 Score=48.35 Aligned_cols=93 Identities=12% Similarity=0.150 Sum_probs=65.1
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh-----CCCcEEEEecCCCCCCCCCCeeEEEeccccccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER-----GIGAMISALSTKQLPYPSSSFEMVHCSRCRVDW 305 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er-----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~ 305 (617)
.+.|+|+|+|.++...+...- .+.+++.++.....|.++ ..++.+..+|+....| ...|+|+|-..--..
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~A~---rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaL 109 (252)
T COG4076 35 TFADLGAGSGILSVVAAHAAE---RVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTAL 109 (252)
T ss_pred ceeeccCCcchHHHHHHhhhc---eEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHh
Confidence 399999999988776665422 455667788887888876 2357788888888877 446999985311111
Q ss_pred c-cchHHHHHHHHHhccCCeEEEE
Q 039518 306 H-ANDGILLKEVDRVLRPNGYFVY 328 (617)
Q Consensus 306 ~-~d~~~~L~el~RvLrPGG~Lii 328 (617)
. +.....+..+...||-+|.++=
T Consensus 110 i~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 110 IEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hcccccHHHHHHHHHhhcCCcccc
Confidence 1 2344578888889999988764
No 365
>PLN03075 nicotianamine synthase; Provisional
Probab=91.54 E-value=0.57 Score=49.67 Aligned_cols=140 Identities=9% Similarity=0.046 Sum_probs=74.8
Q ss_pred CeeeEEeccccccchhhhccC----CCeEEEEeccCCCC-chhHHHH--hhcccc----cccccCCCCCCCCCccchhhc
Q 039518 467 EIRNAMDMNAYCGGFAVALNS----LPVWVMNIVPISMK-NTLSAIY--NRGILG----AFHDWCEPFSTYPRTYDLLHA 535 (617)
Q Consensus 467 ~~Rn~mDm~~~~g~faa~l~~----~~v~vmnv~p~~~~-~~l~~~~--~RGlig----~~~~~~~~f~typrtyDl~H~ 535 (617)
.-+.|+|+|||-|++.|.+.- ...-+.|+--.... +.-.-.+ +.||=. ..+|--+..+ -...||+|=+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE-SLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-ccCCcCEEEE
Confidence 568999999998877554432 23334444322222 1111122 234311 1122222211 1267999987
Q ss_pred cccccccccCCCCCChhhHHhhhhhcccCCceEEEecC---hHHHHHHHhhhhcCCceEEEeeccccCCCceeEEEEEec
Q 039518 536 NHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE---KSLITRIRDLAPKFLWDVELHSLENREKKMESVLICRKK 612 (617)
Q Consensus 536 ~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~---~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~k~ 612 (617)
+ .+-.+ ++=.-..+|-.+=|.|||||++++|-- ..++-.+-....-=.|+....-|-. +..-+.++|++|.
T Consensus 202 ~-ALi~~----dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~~~P~-~~v~Nsvi~~r~~ 275 (296)
T PLN03075 202 A-ALVGM----DKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSVFHPT-DEVINSVIIARKP 275 (296)
T ss_pred e-ccccc----ccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEEECCC-CCceeeEEEEEee
Confidence 7 33322 222335789999999999999999942 1111111111111178876665443 3366789999986
Q ss_pred c
Q 039518 613 F 613 (617)
Q Consensus 613 ~ 613 (617)
-
T Consensus 276 ~ 276 (296)
T PLN03075 276 G 276 (296)
T ss_pred c
Confidence 3
No 366
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=91.52 E-value=0.52 Score=47.46 Aligned_cols=123 Identities=15% Similarity=0.197 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHhcc------CCCCCeeeEEeccccccchhhhccCCCe-EEEEeccCCCCch---------hHHHHhhc
Q 039518 448 SFWQDQVRHYWQLMN------VNETEIRNAMDMNAYCGGFAVALNSLPV-WVMNIVPISMKNT---------LSAIYNRG 511 (617)
Q Consensus 448 ~~w~~~v~~y~~~~~------~~~~~~Rn~mDm~~~~g~faa~l~~~~v-~vmnv~p~~~~~~---------l~~~~~RG 511 (617)
..+.+.++.|++.|= +....==.||.+|||.|.---++-..|. =|..+-|...--. -+.=++|=
T Consensus 51 ~~yne~~~~ykrelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~f 130 (252)
T KOG4300|consen 51 SIYNEIADSYKRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERF 130 (252)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEE
Confidence 456777777876442 2222223579999999987777765555 4555555432110 00111222
Q ss_pred ccccccccCCCCCCCC-CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh----HHHHHH
Q 039518 512 ILGAFHDWCEPFSTYP-RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK----SLITRI 580 (617)
Q Consensus 512 lig~~~~~~~~f~typ-rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~----~~~~~~ 580 (617)
..|- -|.++--+ -+||.|-+.-++ |+--+....|-|+-|||||||.+|+=+.+ +.|+++
T Consensus 131 vva~----ge~l~~l~d~s~DtVV~TlvL------CSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i 194 (252)
T KOG4300|consen 131 VVAD----GENLPQLADGSYDTVVCTLVL------CSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRI 194 (252)
T ss_pred Eeec----hhcCcccccCCeeeEEEEEEE------eccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHH
Confidence 2222 24444334 789988754332 44445568999999999999999996543 455554
No 367
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=91.48 E-value=0.2 Score=53.77 Aligned_cols=99 Identities=10% Similarity=0.094 Sum_probs=51.7
Q ss_pred HHHhccCCCCCeeeEEeccccccchhhhccCC---CeEEEEeccCCCCchhHHH----Hhhcccc---cccccCCCCCCC
Q 039518 457 YWQLMNVNETEIRNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMKNTLSAI----YNRGILG---AFHDWCEPFSTY 526 (617)
Q Consensus 457 y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~~~l~~~----~~RGlig---~~~~~~~~f~ty 526 (617)
..+.+.+..+ .+|||+|||.|.+++.|.+. .-.|+.|-... .-+..+ -+.|+-. +..|-.+....
T Consensus 72 ll~~L~i~~g--~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~--~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~- 146 (322)
T PRK13943 72 FMEWVGLDKG--MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR--KICEIAKRNVRRLGIENVIFVCGDGYYGVPE- 146 (322)
T ss_pred HHHhcCCCCC--CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCH--HHHHHHHHHHHHcCCCcEEEEeCChhhcccc-
Confidence 3444556655 47999999999999887542 11233222111 222222 2234311 11222222221
Q ss_pred CCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 527 PRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 527 prtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
...||+|..+.-.. .+.-.+-|.|+|||.+++-.
T Consensus 147 ~~~fD~Ii~~~g~~------------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 147 FAPYDVIFVTVGVD------------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cCCccEEEECCchH------------HhHHHHHHhcCCCCEEEEEe
Confidence 24689988542221 23334567999999988853
No 368
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=91.44 E-value=1.3 Score=48.59 Aligned_cols=45 Identities=13% Similarity=0.335 Sum_probs=32.0
Q ss_pred CCCCCeeEEEecccccccccc-h-------------------------------------HHHHHHHHHhccCCeEEEEE
Q 039518 288 YPSSSFEMVHCSRCRVDWHAN-D-------------------------------------GILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 288 f~d~sFDlV~~s~~l~h~~~d-~-------------------------------------~~~L~el~RvLrPGG~Liis 329 (617)
||+++.++++|+.++ ||... | ..+|+-=.+-|.|||.++++
T Consensus 158 fP~~Slh~~~Ss~sl-HWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 158 FPARSIDVFHSAFSL-HWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred cCCCceEEEEeeccc-eecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence 789999999999765 66521 1 12344455678999999998
Q ss_pred eCCC
Q 039518 330 APPA 333 (617)
Q Consensus 330 ~p~~ 333 (617)
....
T Consensus 237 ~~Gr 240 (386)
T PLN02668 237 CLGR 240 (386)
T ss_pred EecC
Confidence 7544
No 369
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=91.31 E-value=1.1 Score=46.50 Aligned_cols=100 Identities=16% Similarity=0.239 Sum_probs=57.4
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHH--HHHHHHh--------CCCcEEEEec---CCCCCCCCCC-ee
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQ--IQFALER--------GIGAMISALS---TKQLPYPSSS-FE 294 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~--lq~A~er--------g~~~~~~~~d---~~~Lpf~d~s-FD 294 (617)
..+||++|+|+|..+...+..... .+.-.|..... ++..... |..+.+...+ .....+-... ||
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~--~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGA--EVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcc--eeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 345999999999777666653221 12222322222 2222111 2233333221 1111111122 99
Q ss_pred EEEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 295 MVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 295 lV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+|+++.|+.+-. .++.++.-+..+|-.+|.+++..+
T Consensus 165 lilasDvvy~~~-~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 165 LILASDVVYEEE-SFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EEEEeeeeecCC-cchhHHHHHHHHHhcCCeEEEEEe
Confidence 999999877644 788899999999999997777654
No 370
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=91.17 E-value=3.2 Score=43.36 Aligned_cols=126 Identities=11% Similarity=0.118 Sum_probs=75.6
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCC--CCCeeEEEeccccccc---
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYP--SSSFEMVHCSRCRVDW--- 305 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~--d~sFDlV~~s~~l~h~--- 305 (617)
+++|+-||.|.+..-+.+.|.. .+.++|+++.+++..+.+.... +...|+..+... ...+|+++.+.---.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~--~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~a 78 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFE--IVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIA 78 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCE--EEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCCChhhhHH
Confidence 5999999999998888888865 4667899999988777664332 455666655422 3569999976311111
Q ss_pred -----ccc-hHHHHHHH---HHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 306 -----HAN-DGILLKEV---DRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 306 -----~~d-~~~~L~el---~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
..+ ...++.++ .+.++|. ++++... .......+...+..+.+.++++|+.+...
T Consensus 79 g~~~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV-~g~~~~~~~~~~~~i~~~l~~~GY~~~~~ 141 (275)
T cd00315 79 GKRKGFEDTRGTLFFEIIRILKEKKPK-YFLLENV-KGLLTHDNGNTLKVILNTLEELGYNVYWK 141 (275)
T ss_pred hhcCCCCCchHHHHHHHHHHHHhcCCC-EEEEEcC-cchhccCchHHHHHHHHHHHhCCcEEEEE
Confidence 112 22244444 4445666 3333221 12222223345777888888999876543
No 371
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=91.12 E-value=0.35 Score=51.32 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=66.1
Q ss_pred eeeEEeccccccchhhhccCCCe-EEEEeccCCCCchhHHHHhhccccccc-ccC-----CCCCCCCCccchhhcccccc
Q 039518 468 IRNAMDMNAYCGGFAVALNSLPV-WVMNIVPISMKNTLSAIYNRGILGAFH-DWC-----EPFSTYPRTYDLLHANHLFS 540 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~~v-~vmnv~p~~~~~~l~~~~~RGlig~~~-~~~-----~~f~typrtyDl~H~~~~~s 540 (617)
=|.|+|+|||-|-|.=.|....- .|+-+=|..-. .+|+-+-+-++|.-. ... |.++. ..+||+|=+.|++=
T Consensus 116 gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf-~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLF-YLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLY 193 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHH-HHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehh
Confidence 37999999999999877766554 78888776654 333444344444211 111 22344 58999999888876
Q ss_pred ccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 541 HYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 541 ~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
| |=+-.+.|.++=..|||||-+|+-
T Consensus 194 H------rr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 194 H------RRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred c------cCCHHHHHHHHHHhhCCCCEEEEE
Confidence 3 334456788999999999999974
No 372
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=90.92 E-value=0.044 Score=48.62 Aligned_cols=96 Identities=16% Similarity=0.291 Sum_probs=52.6
Q ss_pred eEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hc-------ccccccccCCCCCCCCCccchhhccc
Q 039518 470 NAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RG-------ILGAFHDWCEPFSTYPRTYDLLHANH 537 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RG-------lig~~~~~~~~f~typrtyDl~H~~~ 537 (617)
.|||++||.|.|+.++...- .-++.=.|-. ..+.++-. .| ..|-+.+..+.++ +..||+|=++-
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~--~~~~D~Iv~np 78 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLP--DGKFDLIVTNP 78 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCT--TT-EEEEEE--
T ss_pred EEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhcc--CceeEEEEECC
Confidence 69999999999998886543 1222222222 12111111 11 1222223333344 38899998877
Q ss_pred cccccc---cCCCCCChhhHHhhhhhcccCCceEEE
Q 039518 538 LFSHYK---NRGEVCSLEDIMLEMDLIIRPQGFIII 570 (617)
Q Consensus 538 ~~s~~~---~~~~~c~~~~~l~e~dRilRP~G~~i~ 570 (617)
-|.... ....+ ....++-++.|+|||||.+++
T Consensus 79 P~~~~~~~~~~~~~-~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 79 PYGPRSGDKAALRR-LYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp STTSBTT----GGC-HHHHHHHHHHHHEEEEEEEEE
T ss_pred CCccccccchhhHH-HHHHHHHHHHHHcCCCeEEEE
Confidence 776321 00111 345778899999999999876
No 373
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=90.64 E-value=0.57 Score=49.72 Aligned_cols=116 Identities=17% Similarity=0.210 Sum_probs=63.6
Q ss_pred CeeeEEeccccccchhhhccCC---CeEEEEeccCCCCchhHHHHhh----cccccccccCCCCCCCC--Cccchhhccc
Q 039518 467 EIRNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMKNTLSAIYNR----GILGAFHDWCEPFSTYP--RTYDLLHANH 537 (617)
Q Consensus 467 ~~Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~~~l~~~~~R----Glig~~~~~~~~f~typ--rtyDl~H~~~ 537 (617)
.-+||+|.|||.|=+|=|..+. +|.-.-+=| -.++++.|- |+--+.+.=+-.-++-| +.||+|=|+=
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp----~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI 237 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDP----QAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI 237 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCH----HHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh
Confidence 4599999999999886555433 344333322 222333221 11100111111112333 5899988554
Q ss_pred cccccccCCCCCChhhHHhhhhhcccCCceEEEecCh-HHHHHHHhhhhcCCceEEEee
Q 039518 538 LFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK-SLITRIRDLAPKFLWDVELHS 595 (617)
Q Consensus 538 ~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~-~~~~~~~~~~~~~~W~~~~~~ 595 (617)
|=.- +..+.=++-|.|+|||++|++.-. +-.+.|.+...+=-|++..+.
T Consensus 238 LA~v---------l~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 238 LAEV---------LVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred hHHH---------HHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEE
Confidence 3221 123445678999999999999532 224556666666677766654
No 374
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=90.62 E-value=0.19 Score=48.60 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=47.5
Q ss_pred CCCeeEEEecccccccc----cc------hHHHHHHHHHhccCCeEEEEEeCCCCCCCCC-ChhhHHHHHHHHHHcCceE
Q 039518 290 SSSFEMVHCSRCRVDWH----AN------DGILLKEVDRVLRPNGYFVYSAPPAYRKDKD-YPLIWDKLVNLTTAMCWKL 358 (617)
Q Consensus 290 d~sFDlV~~s~~l~h~~----~d------~~~~L~el~RvLrPGG~Liis~p~~~~~~~~-~~~~W~~le~La~~~gw~~ 358 (617)
.++||.+.|..++.|.- .| ....+.++.++|||||.|+++.|-....... ..+++..+.-..--.||+.
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~ 140 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEW 140 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEE
Confidence 46799999887777753 11 2568999999999999999999844321111 1123333444444678988
Q ss_pred EEE
Q 039518 359 IAR 361 (617)
Q Consensus 359 v~~ 361 (617)
+..
T Consensus 141 i~t 143 (177)
T PF03269_consen 141 IDT 143 (177)
T ss_pred Eee
Confidence 863
No 375
>PRK00811 spermidine synthase; Provisional
Probab=90.58 E-value=0.71 Score=48.48 Aligned_cols=103 Identities=10% Similarity=0.113 Sum_probs=54.7
Q ss_pred CCeeeEEeccccccchhhhccCC-CeEEEEeccCCCCchhHHHHhh------cc-----cc-cccccCCCCCCCCCccch
Q 039518 466 TEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMKNTLSAIYNR------GI-----LG-AFHDWCEPFSTYPRTYDL 532 (617)
Q Consensus 466 ~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~~~l~~~~~R------Gl-----ig-~~~~~~~~f~typrtyDl 532 (617)
..-++|||+|||.|+.+..+++. ++--+-+|=.|. ..+.++-+. |+ +- +..|-.+-..+-+.+||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~-~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDE-RVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCH-HHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 45689999999999999988776 443222232222 233333221 11 00 111111111222478999
Q ss_pred hhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 533 LHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 533 ~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
|=.+. +..+. ....---..++-++-|+|+|||.+++.
T Consensus 154 Ii~D~-~dp~~-~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDS-TDPVG-PAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECC-CCCCC-chhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 86432 22110 000000135667889999999999986
No 376
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=90.50 E-value=2.6 Score=40.97 Aligned_cols=119 Identities=18% Similarity=0.211 Sum_probs=72.7
Q ss_pred EECCCCcHHHHHhccC-C-CcEEEeeecCCcHHHHH----------HHHHhCCCcEEEEecCCCCC----CCCCCeeEEE
Q 039518 234 DVGCGVASFSAFLLPL-D-IQTMSFAPKDGHENQIQ----------FALERGIGAMISALSTKQLP----YPSSSFEMVH 297 (617)
Q Consensus 234 DIGCGtG~~a~~La~~-g-v~~v~v~~iDis~~~lq----------~A~erg~~~~~~~~d~~~Lp----f~d~sFDlV~ 297 (617)
=||=|.=+|+..|++. + ...+-.+..|..++..+ ..++.|..+.+ -.|+..+. ...+.||.|+
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~-~VDat~l~~~~~~~~~~FDrIi 80 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLH-GVDATKLHKHFRLKNQRFDRII 80 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCcccc-CCCCCcccccccccCCcCCEEE
Confidence 3677777888888876 2 22233334454443332 22233554433 33555553 3567899999
Q ss_pred ecccccccc---c--c---------hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 298 CSRCRVDWH---A--N---------DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 298 ~s~~l~h~~---~--d---------~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
-++ -|.. + + ...++..+.++|+++|.+.|+.-... +.. .|+ ++.+++..|+.++..
T Consensus 81 FNF--PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~---py~--~W~-i~~lA~~~gl~l~~~ 150 (166)
T PF10354_consen 81 FNF--PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ---PYD--SWN-IEELAAEAGLVLVRK 150 (166)
T ss_pred EeC--CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC---CCc--ccc-HHHHHHhcCCEEEEE
Confidence 774 2322 0 0 13478899999999999999864222 122 264 779999999988763
No 377
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=90.01 E-value=0.46 Score=53.00 Aligned_cols=103 Identities=14% Similarity=0.241 Sum_probs=56.8
Q ss_pred cCCCCCeeeEEeccccccchhhhccCC---CeEEEEeccCCCC-chhHHHHh----hcccc---cccccCCCCCCCCCcc
Q 039518 462 NVNETEIRNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMK-NTLSAIYN----RGILG---AFHDWCEPFSTYPRTY 530 (617)
Q Consensus 462 ~~~~~~~Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~-~~l~~~~~----RGlig---~~~~~~~~f~typrty 530 (617)
.+..+ .+|+|||||.|+++.++.+. +--|+ -.|-. +.+..+-+ .|+-. +-.|..+....++.+|
T Consensus 247 ~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~~v~---avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~f 321 (444)
T PRK14902 247 DPKGG--DTVLDACAAPGGKTTHIAELLKNTGKVV---ALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKF 321 (444)
T ss_pred CCCCC--CEEEEeCCCCCHHHHHHHHHhCCCCEEE---EEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccC
Confidence 34455 57999999999998777542 22222 22333 44433332 24311 2234433323345789
Q ss_pred chhhcc------ccccc-----cccCCCCCCh-------hhHHhhhhhcccCCceEEEe
Q 039518 531 DLLHAN------HLFSH-----YKNRGEVCSL-------EDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 531 Dl~H~~------~~~s~-----~~~~~~~c~~-------~~~l~e~dRilRP~G~~i~~ 571 (617)
|+|=++ |.+.. |. .+.-.+ ..+|-+.=|+|+|||.+|++
T Consensus 322 D~Vl~D~Pcsg~G~~~~~p~~~~~--~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 322 DKILVDAPCSGLGVIRRKPDIKYN--KTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred CEEEEcCCCCCCeeeccCcchhhc--CCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 998543 22221 00 000111 25788899999999999976
No 378
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=89.95 E-value=0.42 Score=53.13 Aligned_cols=106 Identities=17% Similarity=0.249 Sum_probs=56.4
Q ss_pred ccCCCCCeeeEEeccccccchhhhccCC--CeEEEEeccCCCC-chhHHH---Hhh-cc-cc-cccccCCCCCCC-CCcc
Q 039518 461 MNVNETEIRNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMK-NTLSAI---YNR-GI-LG-AFHDWCEPFSTY-PRTY 530 (617)
Q Consensus 461 ~~~~~~~~Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~-~~l~~~---~~R-Gl-ig-~~~~~~~~f~ty-prty 530 (617)
+++..| ..|||+|||.|+++.++.+. +.-| +-.|.. ..+..+ ++| |+ +- +-+|-.+....+ +.+|
T Consensus 240 l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~v---~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 240 LAPQNG--ERVLDACAAPGGKTAHILELAPQAQV---VALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred cCCCCC--CEEEEeCCCCChHHHHHHHHcCCCEE---EEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCC
Confidence 445555 47999999999999877543 1222 222333 333333 333 32 11 223333322223 3679
Q ss_pred chhhccccccccc-cCCC------C---------CChhhHHhhhhhcccCCceEEEe
Q 039518 531 DLLHANHLFSHYK-NRGE------V---------CSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 531 Dl~H~~~~~s~~~-~~~~------~---------c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
|.|=++--+|..- ...+ + .....+|-+.=++|+|||.++++
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvys 371 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYA 371 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9886443222100 0000 0 01136788999999999999987
No 379
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=89.63 E-value=1.4 Score=41.73 Aligned_cols=97 Identities=15% Similarity=0.141 Sum_probs=57.5
Q ss_pred eeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCC-C-CCCCeeEEEeccccccccc--------chHHHHHHHHHh
Q 039518 256 FAPKDGHENQIQFALER----GI--GAMISALSTKQLP-Y-PSSSFEMVHCSRCRVDWHA--------NDGILLKEVDRV 319 (617)
Q Consensus 256 v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lp-f-~d~sFDlV~~s~~l~h~~~--------d~~~~L~el~Rv 319 (617)
|.+.|+-+++++..+++ +. ++.+...+=+++. + +.+++|+|+.+...++-.+ .--.+|+.+.++
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~l 81 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALEL 81 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHh
Confidence 45679999999988876 22 3666665544443 2 3358999998754444221 124579999999
Q ss_pred ccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcC
Q 039518 320 LRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMC 355 (617)
Q Consensus 320 LrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~g 355 (617)
|+|||.+.++. |.-.+......+.+++.++.+.
T Consensus 82 L~~gG~i~iv~---Y~GH~gG~eE~~av~~~~~~L~ 114 (140)
T PF06962_consen 82 LKPGGIITIVV---YPGHPGGKEESEAVEEFLASLD 114 (140)
T ss_dssp EEEEEEEEEEE-----STCHHHHHHHHHHHHHHTS-
T ss_pred hccCCEEEEEE---eCCCCCCHHHHHHHHHHHHhCC
Confidence 99999999987 3333333333444666666543
No 380
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=89.35 E-value=0.75 Score=49.62 Aligned_cols=67 Identities=25% Similarity=0.397 Sum_probs=37.0
Q ss_pred CCCCCCeeEEEecccccccccc-h--------------------------------------HHHHHHHHHhccCCeEEE
Q 039518 287 PYPSSSFEMVHCSRCRVDWHAN-D--------------------------------------GILLKEVDRVLRPNGYFV 327 (617)
Q Consensus 287 pf~d~sFDlV~~s~~l~h~~~d-~--------------------------------------~~~L~el~RvLrPGG~Li 327 (617)
-||+++.|+++|+.++ ||... | ..+|+-=.+-|+|||.++
T Consensus 102 LfP~~Svh~~~Ss~al-HWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mv 180 (334)
T PF03492_consen 102 LFPSNSVHFGHSSYAL-HWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVPGGRMV 180 (334)
T ss_dssp -S-TT-EEEEEEES-T-TB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred cCCCCceEEEEEechh-hhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheeccCcEEE
Confidence 3789999999998754 55411 1 123444556789999999
Q ss_pred EEeCCCCCCCC---CChhhHHHHHHHHHHc
Q 039518 328 YSAPPAYRKDK---DYPLIWDKLVNLTTAM 354 (617)
Q Consensus 328 is~p~~~~~~~---~~~~~W~~le~La~~~ 354 (617)
++........+ .....|+-+.+.+..|
T Consensus 181 l~~~gr~~~~~~~~~~~~~~~~l~~~l~dM 210 (334)
T PF03492_consen 181 LTFLGRDEEDPSSTGSCMLWDLLADALRDM 210 (334)
T ss_dssp EEEEE-STSSTTSTTCCCHHHHHHHHHHHH
T ss_pred EEEeeccccccccCCcchHHHHHHHHHHHH
Confidence 98653333211 1224466666555544
No 381
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=89.30 E-value=0.65 Score=52.25 Aligned_cols=80 Identities=15% Similarity=0.080 Sum_probs=53.1
Q ss_pred CcccCChhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-
Q 039518 200 THFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI- 274 (617)
Q Consensus 200 t~F~~~a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~- 274 (617)
..|-+......+.+-+++.... .+.++..+||+-||||.++..+++.-- .+.|+++++..++.|+.+ |+
T Consensus 358 ~AFFQ~Nt~~aevLys~i~e~~---~l~~~k~llDv~CGTG~iglala~~~~---~ViGvEi~~~aV~dA~~nA~~Ngis 431 (534)
T KOG2187|consen 358 GAFFQTNTSAAEVLYSTIGEWA---GLPADKTLLDVCCGTGTIGLALARGVK---RVIGVEISPDAVEDAEKNAQINGIS 431 (534)
T ss_pred chhhccCcHHHHHHHHHHHHHh---CCCCCcEEEEEeecCCceehhhhcccc---ceeeeecChhhcchhhhcchhcCcc
Confidence 3454544444455555554332 234556699999999999999987633 567788999999888765 43
Q ss_pred CcEEEEecCCC
Q 039518 275 GAMISALSTKQ 285 (617)
Q Consensus 275 ~~~~~~~d~~~ 285 (617)
++.++++.+++
T Consensus 432 Na~Fi~gqaE~ 442 (534)
T KOG2187|consen 432 NATFIVGQAED 442 (534)
T ss_pred ceeeeecchhh
Confidence 46777764443
No 382
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=89.26 E-value=2 Score=46.61 Aligned_cols=104 Identities=13% Similarity=0.046 Sum_probs=65.5
Q ss_pred ccCCCCeEEEECCCC-cHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCC-C-----CC-CCCCeeE
Q 039518 225 RSAGVFQVLDVGCGV-ASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQ-L-----PY-PSSSFEM 295 (617)
Q Consensus 225 r~~~g~rVLDIGCGt-G~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~-L-----pf-~d~sFDl 295 (617)
++.++.+||.+|||. |..+..+++. +.. .+..++.++...+.+++.+. +.+......+ + .+ ..+.+|+
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~--~vi~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~l~~~~~~~~~D~ 257 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAE--RVIAIDRVPERLEMARSHLG-AETINFEEVDDVVEALRELTGGRGPDV 257 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHcCC-cEEEcCCcchHHHHHHHHHcCCCCCCE
Confidence 345678899999987 7777777765 432 35666888888899888732 2222111111 1 11 2336999
Q ss_pred EEeccccc--------------ccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 296 VHCSRCRV--------------DWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 296 V~~s~~l~--------------h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
|+-.-... +-..+....+.++.+.|+|+|.+++...
T Consensus 258 vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 258 CIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred EEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 98642100 0112356689999999999999998763
No 383
>PRK11524 putative methyltransferase; Provisional
Probab=89.22 E-value=0.86 Score=47.81 Aligned_cols=82 Identities=15% Similarity=0.212 Sum_probs=48.1
Q ss_pred EEEEecCCCC--CCCCCCeeEEEeccccc----------ccc-----cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCC
Q 039518 277 MISALSTKQL--PYPSSSFEMVHCSRCRV----------DWH-----ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKD 339 (617)
Q Consensus 277 ~~~~~d~~~L--pf~d~sFDlV~~s~~l~----------h~~-----~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~ 339 (617)
.+..+|...+ .+++++||+|++.--.. .+. +-....+.++.|+|||||.+++.... .
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~---~--- 83 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST---E--- 83 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc---h---
Confidence 4555554332 34678899999852110 000 11246889999999999999986421 1
Q ss_pred ChhhHHHHHHHHHHcCceEEEEeeeeEEEeecc
Q 039518 340 YPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEE 372 (617)
Q Consensus 340 ~~~~W~~le~La~~~gw~~v~~~~~~~IwqKp~ 372 (617)
. .....++...+|... +..||.|+.
T Consensus 84 -~---~~~~~~~~~~~f~~~----~~iiW~k~~ 108 (284)
T PRK11524 84 -N---MPFIDLYCRKLFTIK----SRIVWSYDS 108 (284)
T ss_pred -h---hhHHHHHHhcCcceE----EEEEEEeCC
Confidence 0 012234445677643 456899864
No 384
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=89.17 E-value=1.2 Score=48.99 Aligned_cols=131 Identities=12% Similarity=0.145 Sum_probs=79.7
Q ss_pred ecCCCCCcccCChhHHHHHHHhhh----hhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHH
Q 039518 194 WFPGGGTHFKHGAPEYIQRLGNMM----TNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFA 269 (617)
Q Consensus 194 ~Fpgggt~F~~~a~~Y~~~L~~~L----~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A 269 (617)
.++..+..|.+-....-..|.=++ ..... +...+.+|||.=+|+|.=+...+..-..+..+...|+++++++..
T Consensus 13 ~~~~~~~vFYNP~~~~nRDlsvl~~~~~~~~~~--~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i 90 (377)
T PF02005_consen 13 TIPKKAPVFYNPVMEFNRDLSVLAIRYLAVLKE--KRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELI 90 (377)
T ss_dssp STTTTSSSS--GGGHHHHHHHHHH---HHHHHH--CH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHH
T ss_pred ecCCCCCcccCcchhcccceeehhHHHHHHhhh--hhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHH
Confidence 356667778777776655543332 11111 112234799999999987777766522344788899999999888
Q ss_pred HHh----CCCc---EEEEecCCCCC-CCCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 270 LER----GIGA---MISALSTKQLP-YPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 270 ~er----g~~~---~~~~~d~~~Lp-f~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+++ ++.. .+...|+..+= ...+.||+|= +-++- .+..+|..+.+.++.||+|.++..
T Consensus 91 ~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~ID----lDPfG-Sp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 91 KRNLELNGLEDERIEVSNMDANVLLYSRQERFDVID----LDPFG-SPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp HHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEE----E--SS---HHHHHHHHHHEEEEEEEEEEE-
T ss_pred HHhHhhccccCceEEEehhhHHHHhhhccccCCEEE----eCCCC-CccHhHHHHHHHhhcCCEEEEecc
Confidence 775 4433 55555654432 2467899996 34554 678899999999999999999864
No 385
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=88.93 E-value=0.66 Score=48.15 Aligned_cols=104 Identities=15% Similarity=0.221 Sum_probs=53.3
Q ss_pred cCCCCCeeeEEeccccccchhhhccC---CCeEEEEeccCCCC-chhHHH---Hhh-cc--cccc-cccCCCCCCCCCcc
Q 039518 462 NVNETEIRNAMDMNAYCGGFAVALNS---LPVWVMNIVPISMK-NTLSAI---YNR-GI--LGAF-HDWCEPFSTYPRTY 530 (617)
Q Consensus 462 ~~~~~~~Rn~mDm~~~~g~faa~l~~---~~v~vmnv~p~~~~-~~l~~~---~~R-Gl--ig~~-~~~~~~f~typrty 530 (617)
.+..+ -+||||+||.|+++.+|.. ..--| +-.|.. .-+..+ ++| |+ +-++ +|- ..++.....|
T Consensus 68 ~~~~g--~~VLDl~ag~G~kt~~la~~~~~~g~v---~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~-~~~~~~~~~f 141 (264)
T TIGR00446 68 EPDPP--ERVLDMAAAPGGKTTQISALMKNEGAI---VANEFSKSRTKVLIANINRCGVLNVAVTNFDG-RVFGAAVPKF 141 (264)
T ss_pred CCCCc--CEEEEECCCchHHHHHHHHHcCCCCEE---EEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH-HHhhhhccCC
Confidence 34555 4699999999999866532 22222 223433 333333 222 33 1122 221 1222222458
Q ss_pred chhhcccccccc----cc-CCC-CC---C-------hhhHHhhhhhcccCCceEEEe
Q 039518 531 DLLHANHLFSHY----KN-RGE-VC---S-------LEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 531 Dl~H~~~~~s~~----~~-~~~-~c---~-------~~~~l~e~dRilRP~G~~i~~ 571 (617)
|.|=.+-=.|.. +. +.. +- . -..||-++=++|||||++|++
T Consensus 142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 888644222210 00 000 00 0 125888899999999999998
No 386
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=88.88 E-value=2.3 Score=42.30 Aligned_cols=97 Identities=19% Similarity=0.117 Sum_probs=54.1
Q ss_pred cCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEe-cCCCC--------CCCCCCeeE
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISAL-STKQL--------PYPSSSFEM 295 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~-d~~~L--------pf~d~sFDl 295 (617)
+.++.+|||+||..|+|+.-..++ ++.. -+.++|+-. ..--.|. .+..+ |+.+- .+|+...|+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g-~v~gVDllh----~~p~~Ga--~~i~~~dvtdp~~~~ki~e~lp~r~Vdv 139 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNG-MVLGVDLLH----IEPPEGA--TIIQGNDVTDPETYRKIFEALPNRPVDV 139 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCc-eEEEEeeee----ccCCCCc--ccccccccCCHHHHHHHHHhCCCCcccE
Confidence 467899999999999999988776 2322 233444321 1111121 22222 22110 135788999
Q ss_pred EEecccccccc----cchH-------HHHHHHHHhccCCeEEEEEe
Q 039518 296 VHCSRCRVDWH----ANDG-------ILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 296 V~~s~~l~h~~----~d~~-------~~L~el~RvLrPGG~Liis~ 330 (617)
|++-. ...-. .|.. .++.-....++|+|.|+.-.
T Consensus 140 VlSDM-apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 140 VLSDM-APNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred EEecc-CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 99642 22211 1111 23444556788999999854
No 387
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=88.83 E-value=0.4 Score=46.61 Aligned_cols=130 Identities=16% Similarity=0.293 Sum_probs=62.5
Q ss_pred chhhHHHHH--HHHHHhc-----cCCCCCeeeEEecccccc--chhhhcc-CCCeEEEEeccCCCCchhHHHHhh-----
Q 039518 446 DTSFWQDQV--RHYWQLM-----NVNETEIRNAMDMNAYCG--GFAVALN-SLPVWVMNIVPISMKNTLSAIYNR----- 510 (617)
Q Consensus 446 d~~~w~~~v--~~y~~~~-----~~~~~~~Rn~mDm~~~~g--~faa~l~-~~~v~vmnv~p~~~~~~l~~~~~R----- 510 (617)
....|...+ ..|.... .....+-++||+.|||.| |.+++.. ...-.|+.=.+. .-..+..-.++
T Consensus 17 G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~ 95 (173)
T PF10294_consen 17 GGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLL 95 (173)
T ss_dssp ------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT----
T ss_pred cEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccc
Confidence 345675443 3455432 112233479999999888 7777777 222333332222 11223333333
Q ss_pred -c-ccccccccCCCCC--C-CCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec------ChHHHHH
Q 039518 511 -G-ILGAFHDWCEPFS--T-YPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD------EKSLITR 579 (617)
Q Consensus 511 -G-lig~~~~~~~~f~--t-yprtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d------~~~~~~~ 579 (617)
+ +--.-.+|.++.+ . -++.||+|-|+.++=. .=..+.++-=++++|.|+|-+++.. ...++++
T Consensus 96 ~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~------~~~~~~L~~tl~~ll~~~~~vl~~~~~R~~~~~~F~~~ 169 (173)
T PF10294_consen 96 DGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYD------EELFEPLVRTLKRLLKPNGKVLLAYKRRRKSEQEFFDR 169 (173)
T ss_dssp ----EEEE--TTS-HHHHHHS-SSBSEEEEES--S-------GGGHHHHHHHHHHHBTT-TTEEEEEE-S-TGGCHHHHH
T ss_pred cccccCcEEEecCcccccccccccCCEEEEecccch------HHHHHHHHHHHHHHhCCCCEEEEEeCEecHHHHHHHHH
Confidence 2 3445579988541 1 1478999998877641 1234566677899999999988852 2345555
Q ss_pred HHh
Q 039518 580 IRD 582 (617)
Q Consensus 580 ~~~ 582 (617)
+++
T Consensus 170 ~~k 172 (173)
T PF10294_consen 170 LKK 172 (173)
T ss_dssp H--
T ss_pred hhh
Confidence 543
No 388
>PHA01634 hypothetical protein
Probab=88.07 E-value=2.5 Score=39.61 Aligned_cols=68 Identities=10% Similarity=-0.050 Sum_probs=45.0
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEE--ecCCCCCCCCCCeeEEEe
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISA--LSTKQLPYPSSSFEMVHC 298 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~--~d~~~Lpf~d~sFDlV~~ 298 (617)
+++|+|||++.|..+.+++-+|.. .|.+.+.++...+..++.-....+.. ....+.+-.-+.||+.+.
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GAK--~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~i 98 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGAS--FVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFVM 98 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCcc--EEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEEE
Confidence 446999999999999999988876 56677888988888877421111111 112234433456888763
No 389
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=87.69 E-value=2.1 Score=46.48 Aligned_cols=124 Identities=19% Similarity=0.195 Sum_probs=72.6
Q ss_pred HHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCC---cEEEeeecCCcHHHHHHHH---HhCCC--cEEEEec
Q 039518 211 QRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDI---QTMSFAPKDGHENQIQFAL---ERGIG--AMISALS 282 (617)
Q Consensus 211 ~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv---~~v~v~~iDis~~~lq~A~---erg~~--~~~~~~d 282 (617)
.....++|. --+.++++.+|||+.+..|+=++.|++... .---+.+.|++...+.... .+-.. ..+...+
T Consensus 140 qeavSmlPv--L~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~ 217 (375)
T KOG2198|consen 140 QEAVSMLPV--LALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHD 217 (375)
T ss_pred hhhhhccch--hhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeeccc
Confidence 344555543 235678999999999999998888876522 1113567788877654433 22211 2222223
Q ss_pred CCCCC---------CCCCCeeEEEec-ccccc-------------ccc--------chHHHHHHHHHhccCCeEEEEEeC
Q 039518 283 TKQLP---------YPSSSFEMVHCS-RCRVD-------------WHA--------NDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 283 ~~~Lp---------f~d~sFDlV~~s-~~l~h-------------~~~--------d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+...| .....||-|+|- -|... |.. -.-.+|..-.++||+||.++.|+-
T Consensus 218 ~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTC 297 (375)
T KOG2198|consen 218 ASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTC 297 (375)
T ss_pred ceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 22222 233469999862 11100 110 012468899999999999999986
Q ss_pred CCCCC
Q 039518 332 PAYRK 336 (617)
Q Consensus 332 ~~~~~ 336 (617)
..+..
T Consensus 298 SLnpi 302 (375)
T KOG2198|consen 298 SLNPI 302 (375)
T ss_pred CCCch
Confidence 55443
No 390
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=87.62 E-value=0.93 Score=50.85 Aligned_cols=141 Identities=18% Similarity=0.220 Sum_probs=70.1
Q ss_pred ccCccccccchhhHHH---HHHHHHHhccCCCCC----eeeEEeccccccchhh------hccCCCeEEEEeccCCCC-c
Q 039518 437 GITQEEFTTDTSFWQD---QVRHYWQLMNVNETE----IRNAMDMNAYCGGFAV------ALNSLPVWVMNIVPISMK-N 502 (617)
Q Consensus 437 ~~~~~~f~~d~~~w~~---~v~~y~~~~~~~~~~----~Rn~mDm~~~~g~faa------~l~~~~v~vmnv~p~~~~-~ 502 (617)
..+-|.|++|.-++.. .+.....-. ....+ --+|||+|||.|-... +-....+=|-.|--.... -
T Consensus 150 s~tYe~fE~D~vKY~~Ye~AI~~al~D~-~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~ 228 (448)
T PF05185_consen 150 SQTYEVFEKDPVKYDQYERAIEEALKDR-VRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVV 228 (448)
T ss_dssp HHHHHHHCC-HHHHHHHHHHHHHHHHHH-HTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHH
T ss_pred cccHhhHhcCHHHHHHHHHHHHHHHHhh-hhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHH
Confidence 4578999999876643 222211111 23332 3569999999998841 122233333333211111 3
Q ss_pred hhHH-HHhhcc---cccccccCCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe-------
Q 039518 503 TLSA-IYNRGI---LGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR------- 571 (617)
Q Consensus 503 ~l~~-~~~RGl---ig~~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~------- 571 (617)
+|+- |-+.|+ |=++|.=-+.+.. |--.|+|=.--+-|. ...-.+..+|.-.||.|+|+|..|=+
T Consensus 229 ~l~~~v~~n~w~~~V~vi~~d~r~v~l-pekvDIIVSElLGsf----g~nEl~pE~Lda~~rfLkp~Gi~IP~~~t~yla 303 (448)
T PF05185_consen 229 TLQKRVNANGWGDKVTVIHGDMREVEL-PEKVDIIVSELLGSF----GDNELSPECLDAADRFLKPDGIMIPSSYTSYLA 303 (448)
T ss_dssp HHHHHHHHTTTTTTEEEEES-TTTSCH-SS-EEEEEE---BTT----BTTTSHHHHHHHGGGGEEEEEEEESSEEEEEEE
T ss_pred HHHHHHHhcCCCCeEEEEeCcccCCCC-CCceeEEEEeccCCc----cccccCHHHHHHHHhhcCCCCEEeCcchhhEEE
Confidence 4432 244453 5555544444443 556676653222221 11224556788999999999988732
Q ss_pred --cChHHHHHHHhh
Q 039518 572 --DEKSLITRIRDL 583 (617)
Q Consensus 572 --d~~~~~~~~~~~ 583 (617)
......+++...
T Consensus 304 Piss~~l~~~~~~~ 317 (448)
T PF05185_consen 304 PISSPKLYQEVRNW 317 (448)
T ss_dssp EEE-HHHHHHHHHH
T ss_pred EeeCHHHHHHHHhh
Confidence 334556666543
No 391
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=86.98 E-value=3.5 Score=46.05 Aligned_cols=133 Identities=11% Similarity=0.153 Sum_probs=70.0
Q ss_pred cCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hccc---ccccccCCCCCC--C-CCcc
Q 039518 462 NVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RGIL---GAFHDWCEPFST--Y-PRTY 530 (617)
Q Consensus 462 ~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RGli---g~~~~~~~~f~t--y-prty 530 (617)
.+..+ ..|||+|||.|.|+.+|...-- .|+-.|.. ..+..+-+ .|+- =+-.|+-+.+.. + +.+|
T Consensus 294 ~~~~~--~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~f 368 (443)
T PRK13168 294 DPQPG--DRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGF 368 (443)
T ss_pred cCCCC--CEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCC
Confidence 34444 4799999999999999976642 34444554 44444332 2321 112233222222 2 2568
Q ss_pred chhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecChHH-HHHHHhhhhcCCceEEEe---eccccCCCceeE
Q 039518 531 DLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEKSL-ITRIRDLAPKFLWDVELH---SLENREKKMESV 606 (617)
Q Consensus 531 Dl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~~~-~~~~~~~~~~~~W~~~~~---~~e~~~~~~~~~ 606 (617)
|+|-++ ..|-.+..++-.+-+ |.|++.++++=++.. -..++.+.+ --|++... |.=+.+..=|-|
T Consensus 369 D~Vi~d---------PPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~-~gY~l~~i~~~DmFP~T~HvE~v 437 (443)
T PRK13168 369 DKVLLD---------PPRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVE-AGYRLKRAGMLDMFPHTGHVESM 437 (443)
T ss_pred CEEEEC---------cCCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhh-CCcEEEEEEEeccCCCCCcEEEE
Confidence 887522 344444555544444 589999999955544 344555533 23655333 332233333555
Q ss_pred EEEE
Q 039518 607 LICR 610 (617)
Q Consensus 607 l~~~ 610 (617)
.+..
T Consensus 438 ~lL~ 441 (443)
T PRK13168 438 ALFE 441 (443)
T ss_pred EEEE
Confidence 4443
No 392
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=86.65 E-value=1.1 Score=49.99 Aligned_cols=35 Identities=9% Similarity=0.331 Sum_probs=24.4
Q ss_pred hhHHhhhhhcccCCceEEEec----ChHHHHHHHhhhhc
Q 039518 552 EDIMLEMDLIIRPQGFIIIRD----EKSLITRIRDLAPK 586 (617)
Q Consensus 552 ~~~l~e~dRilRP~G~~i~~d----~~~~~~~~~~~~~~ 586 (617)
..+|-++=|+|||||.+|++. ..+-...|+.+++.
T Consensus 364 ~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~ 402 (434)
T PRK14901 364 AELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR 402 (434)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHh
Confidence 478999999999999999872 22334455555543
No 393
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=86.63 E-value=2.6 Score=44.80 Aligned_cols=95 Identities=13% Similarity=0.130 Sum_probs=57.6
Q ss_pred CCCeEEEECCC-CcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEe--cCCCCCCCCCCeeEEEeccccc
Q 039518 228 GVFQVLDVGCG-VASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISAL--STKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 228 ~g~rVLDIGCG-tG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~--d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
++.+||=+|+| .|..+..+++. |.. .+...|.++..++.+++.|....+... +..++....+.||+|+-.-
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~--~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~--- 243 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAA--EIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS--- 243 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCc--EEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC---
Confidence 57789988875 23444444443 442 345567888888999887754322111 1111111123589987431
Q ss_pred ccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 304 DWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 304 h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.....+....++|++||.+++.+.
T Consensus 244 ----G~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 244 ----GHPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ----CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 112467888999999999998764
No 394
>PRK01581 speE spermidine synthase; Validated
Probab=86.61 E-value=1.6 Score=47.67 Aligned_cols=107 Identities=9% Similarity=0.071 Sum_probs=56.4
Q ss_pred CCCeeeEEeccccccchhhhccCCC-eEEEEeccCCCCchhHHHHh--------hc-c-----cccccccCCCCCCCCCc
Q 039518 465 ETEIRNAMDMNAYCGGFAVALNSLP-VWVMNIVPISMKNTLSAIYN--------RG-I-----LGAFHDWCEPFSTYPRT 529 (617)
Q Consensus 465 ~~~~Rn~mDm~~~~g~faa~l~~~~-v~vmnv~p~~~~~~l~~~~~--------RG-l-----ig~~~~~~~~f~typrt 529 (617)
-..-++||++|+|.|+.+..+++.+ +--+-+|-.|. .-+.++-+ +| + --+..|-.+-...-++.
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDp-eVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDG-SMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence 3456899999999999888887764 32222233332 33333332 11 1 00111111111222467
Q ss_pred cchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC
Q 039518 530 YDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 530 yDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
||+|=.+- +........+---...+-.+-|.|+|||.++....
T Consensus 227 YDVIIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 227 YDVIIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred ccEEEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 89887662 11000000111113567789999999999988743
No 395
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=86.55 E-value=1.9 Score=45.08 Aligned_cols=100 Identities=11% Similarity=0.047 Sum_probs=52.9
Q ss_pred CeEEEECCCCc--HHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh---CCC--cEEEEecCCCCC----------C--C
Q 039518 230 FQVLDVGCGVA--SFSAFLLPL-DIQTMSFAPKDGHENQIQFALER---GIG--AMISALSTKQLP----------Y--P 289 (617)
Q Consensus 230 ~rVLDIGCGtG--~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er---g~~--~~~~~~d~~~Lp----------f--~ 289 (617)
...||||||-- ...-..+++ ... ..|.-+|.++..+..++.. ... ..+..+|+.+.. + .
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~-aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPD-ARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT--EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCC-ceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 34999999954 233444433 222 2455568888887755543 223 567777754321 0 1
Q ss_pred CCCeeEEEecccccccc--cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 290 SSSFEMVHCSRCRVDWH--ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 290 d~sFDlV~~s~~l~h~~--~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
++..=+++ ..++++.. +++..++..+...|.||.+|+|+..
T Consensus 149 ~rPVavll-~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 149 DRPVAVLL-VAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp TS--EEEE-CT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCCeeeee-eeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 34444444 33455554 3688999999999999999999964
No 396
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=86.51 E-value=0.53 Score=45.02 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=34.8
Q ss_pred CCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC
Q 039518 520 CEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 520 ~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
.+.++.-+.+||+|=+...+..+ -+....|-||-|+|+|||.+++-|-
T Consensus 35 ~~~lp~~~~~fD~v~~~~~l~~~------~d~~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 35 AIDLPFDDCEFDAVTMGYGLRNV------VDRLRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred hhhCCCCCCCeeEEEecchhhcC------CCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 34455324799999766555433 2456889999999999999998754
No 397
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=86.25 E-value=3.3 Score=42.26 Aligned_cols=118 Identities=14% Similarity=0.212 Sum_probs=76.4
Q ss_pred HHHhccCCCCCeeeEEeccccccchhhhccCCCe-EEEEeccCCCC-chhHHHHhhcccc--cccccCCCCCCCCCccch
Q 039518 457 YWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPV-WVMNIVPISMK-NTLSAIYNRGILG--AFHDWCEPFSTYPRTYDL 532 (617)
Q Consensus 457 y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v-~vmnv~p~~~~-~~l~~~~~RGlig--~~~~~~~~f~typrtyDl 532 (617)
=..+|.+..+.=+-|||+|||.|--++.|.+..- |+ =.|.. .-|.++.||-+=| ++.|.-|.+|+=|-|||=
T Consensus 40 aLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wi----GvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg 115 (270)
T KOG1541|consen 40 ALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWI----GVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDG 115 (270)
T ss_pred HHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEE----eecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccce
Confidence 3455667777788999999999999988887763 43 23433 7788888865432 456777999988999996
Q ss_pred hhccccccccccCCCCCCh------h-----hHHhhhhhcccCCceEEEe---cChHHHHHHHhhh
Q 039518 533 LHANHLFSHYKNRGEVCSL------E-----DIMLEMDLIIRPQGFIIIR---DEKSLITRIRDLA 584 (617)
Q Consensus 533 ~H~~~~~s~~~~~~~~c~~------~-----~~l~e~dRilRP~G~~i~~---d~~~~~~~~~~~~ 584 (617)
+-.-+-. +.-|+- . ...--+-..|.+|+-.+++ ++.+.++.|..-|
T Consensus 116 ~ISISAv------QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a 175 (270)
T KOG1541|consen 116 VISISAV------QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQA 175 (270)
T ss_pred EEEeeee------eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHH
Confidence 4322111 222322 1 2233466889999999998 4444444444433
No 398
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=86.15 E-value=4 Score=42.55 Aligned_cols=94 Identities=15% Similarity=0.210 Sum_probs=60.2
Q ss_pred cCCCCeEEEECCC-CcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCC-----CCCCCCeeEEEe
Q 039518 226 SAGVFQVLDVGCG-VASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQL-----PYPSSSFEMVHC 298 (617)
Q Consensus 226 ~~~g~rVLDIGCG-tG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~L-----pf~d~sFDlV~~ 298 (617)
+.++.+||..|+| .|..+..+++. |.. +..++.++...+.+++.|....+...+ ... ....+.+|+|+.
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~---V~~~~~s~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~D~vid 238 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAA---VIAVDIKEEKLELAKELGADEVLNSLD-DSPKDKKAAGLGGGFDVIFD 238 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCE---EEEEcCCHHHHHHHHHhCCCEEEcCCC-cCHHHHHHHhcCCCceEEEE
Confidence 4566789988876 46666666664 543 455577888888887777532221111 010 123457999884
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.. .....+.++.+.|+++|.++..+
T Consensus 239 ~~-------g~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 239 FV-------GTQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred CC-------CCHHHHHHHHHHhhcCCEEEEEC
Confidence 31 12457889999999999999865
No 399
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=86.10 E-value=2.1 Score=48.40 Aligned_cols=99 Identities=14% Similarity=0.177 Sum_probs=69.6
Q ss_pred CeEEEECCCCcHHHHHhccC---CCcEEEeeecCCcHHHHHHHHHh-----CCCcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 230 FQVLDVGCGVASFSAFLLPL---DIQTMSFAPKDGHENQIQFALER-----GIGAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~---gv~~v~v~~iDis~~~lq~A~er-----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
-.|+-+|+|-|-+....++. --..+.+.+++-+++++-..+.+ ...+++...|+..++.|..+.|++++ ..
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-EL 447 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-EL 447 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-Hh
Confidence 35889999999665444321 11345777788888877655544 34578888899988866688999985 34
Q ss_pred ccccccc--hHHHHHHHHHhccCCeEEEEE
Q 039518 302 RVDWHAN--DGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 302 l~h~~~d--~~~~L~el~RvLrPGG~Liis 329 (617)
+-.+.++ -.+.|.-+-+.|||+|..+=+
T Consensus 448 LGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 448 LGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred hccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 5555432 357899999999999876654
No 400
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=85.80 E-value=2.1 Score=45.35 Aligned_cols=102 Identities=13% Similarity=0.034 Sum_probs=69.2
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh---------CCCcEEEEecCCCC--CCCCCCeeE
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER---------GIGAMISALSTKQL--PYPSSSFEM 295 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er---------g~~~~~~~~d~~~L--pf~d~sFDl 295 (617)
...++||-||-|.|.+......+ ..+-.+.-.|+.+..++..++. +..+.+..+|...+ ....++||+
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 34567999999999988777766 3444666678888887777654 44566777763222 124789999
Q ss_pred EEeccccccccc----chHHHHHHHHHhccCCeEEEEEe
Q 039518 296 VHCSRCRVDWHA----NDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 296 V~~s~~l~h~~~----d~~~~L~el~RvLrPGG~Liis~ 330 (617)
|+.-- -....+ -...+...+.+.||+||+++...
T Consensus 199 ii~ds-sdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 199 IITDS-SDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEec-CCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 98531 111110 12457888999999999999975
No 401
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=85.75 E-value=0.93 Score=50.54 Aligned_cols=123 Identities=12% Similarity=0.148 Sum_probs=63.5
Q ss_pred cccchhhHHHHHHHHHH-hccCCCCCeeeEEeccccccchhhhccC---CCeEEEEeccCCCC-chhHHHHh---h-ccc
Q 039518 443 FTTDTSFWQDQVRHYWQ-LMNVNETEIRNAMDMNAYCGGFAVALNS---LPVWVMNIVPISMK-NTLSAIYN---R-GIL 513 (617)
Q Consensus 443 f~~d~~~w~~~v~~y~~-~~~~~~~~~Rn~mDm~~~~g~faa~l~~---~~v~vmnv~p~~~~-~~l~~~~~---R-Gli 513 (617)
|++..-.+++..+.... .+++..| .+||||+||.||.+.++.. ..--| +-.|-. +-|..+-+ | |+-
T Consensus 214 ~~~G~~~~Qd~~s~~~~~~l~~~~g--~~VLD~cagpGgkt~~la~~~~~~g~V---~a~Dis~~rl~~~~~n~~r~g~~ 288 (431)
T PRK14903 214 IKDGLATVQGESSQIVPLLMELEPG--LRVLDTCAAPGGKTTAIAELMKDQGKI---LAVDISREKIQLVEKHAKRLKLS 288 (431)
T ss_pred HHCCeEEEECHHHHHHHHHhCCCCC--CEEEEeCCCccHHHHHHHHHcCCCCEE---EEEECCHHHHHHHHHHHHHcCCC
Confidence 44443344444444433 3345566 4799999999998766643 22222 223444 44444432 2 441
Q ss_pred ---ccccccCCCCCCC-CCccchhhccccccccccCCC------CC---C-------hhhHHhhhhhcccCCceEEEe
Q 039518 514 ---GAFHDWCEPFSTY-PRTYDLLHANHLFSHYKNRGE------VC---S-------LEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 514 ---g~~~~~~~~f~ty-prtyDl~H~~~~~s~~~~~~~------~c---~-------~~~~l~e~dRilRP~G~~i~~ 571 (617)
-+.+|... ++.+ +..||.|=++---|..-.... +- . -..||-+.=+.|+|||.++++
T Consensus 289 ~v~~~~~Da~~-l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 365 (431)
T PRK14903 289 SIEIKIADAER-LTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS 365 (431)
T ss_pred eEEEEECchhh-hhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 12233332 2212 367898865422221100000 00 0 125688889999999999997
No 402
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=85.66 E-value=0.49 Score=42.89 Aligned_cols=38 Identities=16% Similarity=0.548 Sum_probs=27.1
Q ss_pred CeeEEEecccccccc------cchHHHHHHHHHhccCCeEEEEEe
Q 039518 292 SFEMVHCSRCRVDWH------ANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 292 sFDlV~~s~~l~h~~------~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.||+|+|..+. -|. +-...+++.+++.|+|||.|++.-
T Consensus 1 ~yDvilclSVt-kWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVT-KWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-H-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEee-EEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 48999986433 232 123568999999999999999953
No 403
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=84.93 E-value=3.6 Score=43.88 Aligned_cols=97 Identities=19% Similarity=0.208 Sum_probs=58.1
Q ss_pred cCCCCeEEEECCCC-cHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCC--CCCCCCeeEEEeccc
Q 039518 226 SAGVFQVLDVGCGV-ASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQL--PYPSSSFEMVHCSRC 301 (617)
Q Consensus 226 ~~~g~rVLDIGCGt-G~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~L--pf~d~sFDlV~~s~~ 301 (617)
..++.+||=+|+|. |.++..+++. +..++.++..+.++...+.+++.|... + ....+++ ....+.||+|+-.-
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~-v-~~~~~~~~~~~~~~~~d~vid~~- 246 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY-V-NSSKTPVAEVKLVGEFDLIIEAT- 246 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE-e-cCCccchhhhhhcCCCCEEEECc-
Confidence 34677899998763 4555555543 554444444445777888888877542 1 1111110 00124589888431
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.....+.+..++|++||.+++.+.
T Consensus 247 ------g~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 247 ------GVPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred ------CCHHHHHHHHHHccCCcEEEEEec
Confidence 112478889999999999988653
No 404
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=84.56 E-value=1.3 Score=44.61 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=18.6
Q ss_pred hHHhhhhhcccCCceEEEecCh
Q 039518 553 DIMLEMDLIIRPQGFIIIRDEK 574 (617)
Q Consensus 553 ~~l~e~dRilRP~G~~i~~d~~ 574 (617)
.+|.|.-=+||+||.++.--++
T Consensus 164 ~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 164 TLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred hHHHHHHhhhhcCceEEEEeeH
Confidence 6888999999999999876544
No 405
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=84.24 E-value=10 Score=41.53 Aligned_cols=108 Identities=16% Similarity=0.136 Sum_probs=65.0
Q ss_pred eEEEECCCCc----HHHHHhccC--CCcEEEeeecCC----cHHHHHHH--------HHhCCCcEEEEe---cCCCC---
Q 039518 231 QVLDVGCGVA----SFSAFLLPL--DIQTMSFAPKDG----HENQIQFA--------LERGIGAMISAL---STKQL--- 286 (617)
Q Consensus 231 rVLDIGCGtG----~~a~~La~~--gv~~v~v~~iDi----s~~~lq~A--------~erg~~~~~~~~---d~~~L--- 286 (617)
.|+|+|.|.| .+...|+.+ ++..+.||+++. +...++.+ +..|++..+... ..+.+
T Consensus 113 HIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~ 192 (374)
T PF03514_consen 113 HIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDPS 192 (374)
T ss_pred EEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCCHH
Confidence 5999999999 445555555 556778999888 55555444 444888777663 22222
Q ss_pred --CCCCCCeeEEEeccccccccc------chHHHHHHHHHhccCCeEEEEEeCCCCCCCCC
Q 039518 287 --PYPSSSFEMVHCSRCRVDWHA------NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKD 339 (617)
Q Consensus 287 --pf~d~sFDlV~~s~~l~h~~~------d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~ 339 (617)
...++..=+|.|...+++..+ ++...+....|-|+|.-.. ++....+...+.
T Consensus 193 ~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv-~~E~ea~~n~~~ 252 (374)
T PF03514_consen 193 MLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVV-LVEQEADHNSPS 252 (374)
T ss_pred HhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEE-EEeecCCCCCCc
Confidence 223343444555555566542 2445677788899999444 444444444443
No 406
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=84.07 E-value=5.7 Score=39.24 Aligned_cols=137 Identities=15% Similarity=0.288 Sum_probs=78.8
Q ss_pred cchhhHHHHHHHHHHhcc-CCCCCeeeEEeccccccchhh---hccCCCeEEEEeccCCCC-chhH-HHHhhcc--cccc
Q 039518 445 TDTSFWQDQVRHYWQLMN-VNETEIRNAMDMNAYCGGFAV---ALNSLPVWVMNIVPISMK-NTLS-AIYNRGI--LGAF 516 (617)
Q Consensus 445 ~d~~~w~~~v~~y~~~~~-~~~~~~Rn~mDm~~~~g~faa---~l~~~~v~vmnv~p~~~~-~~l~-~~~~RGl--ig~~ 516 (617)
...+.|.+++-.=...+. +..... +++|+|+| |||=+ |+...+.=+.=|-+..-. +-|. ++-+=|| +-++
T Consensus 26 ~~~~~~~~Hi~DSL~~~~~~~~~~~-~~lDiGSG-aGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~ 103 (184)
T PF02527_consen 26 DPEEIWERHILDSLALLPFLPDFGK-KVLDIGSG-AGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVI 103 (184)
T ss_dssp SHHHHHHHHHHHHHGGGGCS-CCCS-EEEEETST-TTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEE
T ss_pred CHHHHHHHHHHHHHHhhhhhccCCc-eEEecCCC-CCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEE
Confidence 345778776655444444 333333 69999999 44532 222233222223333322 3333 3455566 5577
Q ss_pred cccCCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe---cChHHHHHHHhhhhcCCceEEE
Q 039518 517 HDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR---DEKSLITRIRDLAPKFLWDVEL 593 (617)
Q Consensus 517 ~~~~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~---d~~~~~~~~~~~~~~~~W~~~~ 593 (617)
|..-|. ..++..||+|=|-- -.++..++--+-+.|+|||.++.- +..+++++.++-.+.+.++...
T Consensus 104 ~~R~E~-~~~~~~fd~v~aRA----------v~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~ 172 (184)
T PF02527_consen 104 NGRAEE-PEYRESFDVVTARA----------VAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLS 172 (184)
T ss_dssp ES-HHH-TTTTT-EEEEEEES----------SSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEE
T ss_pred Eeeecc-cccCCCccEEEeeh----------hcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEee
Confidence 777777 56789999987322 234556666678899999999885 4456666777777777777655
Q ss_pred e
Q 039518 594 H 594 (617)
Q Consensus 594 ~ 594 (617)
.
T Consensus 173 v 173 (184)
T PF02527_consen 173 V 173 (184)
T ss_dssp E
T ss_pred e
Confidence 4
No 407
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=83.36 E-value=6.3 Score=45.00 Aligned_cols=100 Identities=13% Similarity=0.127 Sum_probs=64.2
Q ss_pred cCCCCeEEEECCCCcH-HHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCC-----------CC-----
Q 039518 226 SAGVFQVLDVGCGVAS-FSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQ-----------LP----- 287 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~-~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~-----------Lp----- 287 (617)
..++.+||=+|+|.-. .+...++. |. .+...|.+++.++.+++.|... ...+..+ +.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA---~V~a~D~~~~rle~aeslGA~~--v~i~~~e~~~~~~gya~~~s~~~~~ 236 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA---IVRAFDTRPEVAEQVESMGAEF--LELDFEEEGGSGDGYAKVMSEEFIK 236 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHcCCeE--EEeccccccccccchhhhcchhHHH
Confidence 4578999999999754 44444443 54 4777899999999999877542 2111110 10
Q ss_pred -----CCC--CCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 288 -----YPS--SSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 288 -----f~d--~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+.+ +.+|+|+..- ...-...+....+++.+.+||||.++...-
T Consensus 237 ~~~~~~~~~~~gaDVVIeta-g~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 237 AEMALFAEQAKEVDIIITTA-LIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHhccCCCCEEEECC-CCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 3599999653 222222344446999999999999988753
No 408
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=82.39 E-value=2.6 Score=43.42 Aligned_cols=129 Identities=15% Similarity=0.249 Sum_probs=72.6
Q ss_pred cccCccccccchhhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccC--CC--eEEEEeccCCCCchhHHHHhhc
Q 039518 436 IGITQEEFTTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNS--LP--VWVMNIVPISMKNTLSAIYNRG 511 (617)
Q Consensus 436 ~~~~~~~f~~d~~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~--~~--v~vmnv~p~~~~~~l~~~~~RG 511 (617)
.+...+.|-.| ++|-. ...-.++++....--++|.+|||.|.-.==|+. .+ +-||.. + -+++-+.+.-++-
T Consensus 43 y~~~~~rFfkd-R~wL~--~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~ac-D-fsp~Ai~~vk~~~ 117 (264)
T KOG2361|consen 43 YKIHENRFFKD-RNWLL--REFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYAC-D-FSPRAIELVKKSS 117 (264)
T ss_pred hhhccccccch-hHHHH--HhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEc-C-CChHHHHHHHhcc
Confidence 34455555444 44433 122233333332222899999999976544431 22 444432 1 1113332222221
Q ss_pred ------ccccccccCCCC---CCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC
Q 039518 512 ------ILGAFHDWCEPF---STYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 512 ------lig~~~~~~~~f---~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
.-...+|-+.+= +--+-+.|.|-+-.++|- .+.=.+...+-.+-|+|+|||.+++||=
T Consensus 118 ~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSA----i~pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 118 GYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSA----IHPEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred ccchhhhcccceeccchhccCCCCcCccceEEEEEEEec----cChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 223344444332 112489999999999985 3344577899999999999999999963
No 409
>PRK03612 spermidine synthase; Provisional
Probab=82.15 E-value=1.7 Score=49.67 Aligned_cols=123 Identities=8% Similarity=0.032 Sum_probs=62.6
Q ss_pred CeeeEEeccccccchhhhccCCC-eEEEEeccCCCCchhHHHHhh-cc------------ccc-ccccCCCCCCCCCccc
Q 039518 467 EIRNAMDMNAYCGGFAVALNSLP-VWVMNIVPISMKNTLSAIYNR-GI------------LGA-FHDWCEPFSTYPRTYD 531 (617)
Q Consensus 467 ~~Rn~mDm~~~~g~faa~l~~~~-v~vmnv~p~~~~~~l~~~~~R-Gl------------ig~-~~~~~~~f~typrtyD 531 (617)
+-++|||+|||.|+.+..+.+.+ +=.+-+|=.|. .-+..+-+. .+ +-+ ..|=-+-....++.||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~-~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDP-AMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCH-HHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 45789999999999998776654 21111222221 233333221 11 001 1111111223468899
Q ss_pred hhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec-----ChHHHHHHHhhhhcCCceE
Q 039518 532 LLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD-----EKSLITRIRDLAPKFLWDV 591 (617)
Q Consensus 532 l~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d-----~~~~~~~~~~~~~~~~W~~ 591 (617)
+|-.+- ...+.....+=--+.++-++=|+|+|||.+++.. ..+...++.+..+.....+
T Consensus 376 vIi~D~-~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 376 VIIVDL-PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLAT 439 (521)
T ss_pred EEEEeC-CCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEE
Confidence 998662 2111000000001245667889999999999952 2445555666555553433
No 410
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=82.14 E-value=0.75 Score=48.25 Aligned_cols=101 Identities=18% Similarity=0.210 Sum_probs=52.7
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHH------------HHHH---hCCCcEEEEecCCCCCC-CCC
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQ------------FALE---RGIGAMISALSTKQLPY-PSS 291 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq------------~A~e---rg~~~~~~~~d~~~Lpf-~d~ 291 (617)
.+++|||+|||.|.-+......+. ..+...|.+...++ ...+ ......+..-...+.-+ ..+
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~--~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGA--VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred cCceeEecCCcccccchhhhhhcc--ceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 466799999999988877766552 13333444444431 1100 00000111100001111 112
Q ss_pred --CeeEEEecccccccccchHHH-HHHHHHhccCCeEEEEEeC
Q 039518 292 --SFEMVHCSRCRVDWHANDGIL-LKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 292 --sFDlV~~s~~l~h~~~d~~~~-L~el~RvLrPGG~Liis~p 331 (617)
.||+|.++....... ....+ +.....+++++|.+++..-
T Consensus 194 ~~~ydlIlsSetiy~~~-~~~~~~~~~r~~l~~~D~~~~~aAK 235 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSID-SLAVLYLLHRPCLLKTDGVFYVAAK 235 (282)
T ss_pred ccchhhhhhhhhhhCcc-hhhhhHhhhhhhcCCccchhhhhhH
Confidence 688888776544433 22333 6677788899998888653
No 411
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=81.87 E-value=3 Score=46.69 Aligned_cols=101 Identities=15% Similarity=0.168 Sum_probs=53.3
Q ss_pred cCCCCCeeeEEeccccccchhhhccC---CCeEEEEeccCCCC-chhHHH---Hh-hcc--c-ccccccCCCCCCCCCcc
Q 039518 462 NVNETEIRNAMDMNAYCGGFAVALNS---LPVWVMNIVPISMK-NTLSAI---YN-RGI--L-GAFHDWCEPFSTYPRTY 530 (617)
Q Consensus 462 ~~~~~~~Rn~mDm~~~~g~faa~l~~---~~v~vmnv~p~~~~-~~l~~~---~~-RGl--i-g~~~~~~~~f~typrty 530 (617)
.+..| ..|||++||.|+++.+|.+ ..--|..+ |.. .-+..+ .+ .|+ | -+.+|.....+ +.+|
T Consensus 247 ~~~~g--~~VLDlgaG~G~kt~~la~~~~~~~~V~av---D~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~--~~~f 319 (445)
T PRK14904 247 NPQPG--STVLDLCAAPGGKSTFMAELMQNRGQITAV---DRYPQKLEKIRSHASALGITIIETIEGDARSFSP--EEQP 319 (445)
T ss_pred CCCCC--CEEEEECCCCCHHHHHHHHHhCCCcEEEEE---ECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc--CCCC
Confidence 34445 5799999999998765542 22222222 333 333222 22 343 1 12233322211 2579
Q ss_pred chhhcc------ccccc-----cccCCCCCCh-------hhHHhhhhhcccCCceEEEe
Q 039518 531 DLLHAN------HLFSH-----YKNRGEVCSL-------EDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 531 Dl~H~~------~~~s~-----~~~~~~~c~~-------~~~l~e~dRilRP~G~~i~~ 571 (617)
|.|=.+ |.+.. |. ...-.+ ..+|-++=|+|||||.+++.
T Consensus 320 D~Vl~D~Pcsg~g~~~r~p~~~~~--~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvys 376 (445)
T PRK14904 320 DAILLDAPCTGTGVLGRRAELRWK--LTPEKLAELVGLQAELLDHAASLLKPGGVLVYA 376 (445)
T ss_pred CEEEEcCCCCCcchhhcCcchhhc--CCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 988643 22210 10 000111 25899999999999999998
No 412
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=81.53 E-value=2.3 Score=46.92 Aligned_cols=120 Identities=18% Similarity=0.207 Sum_probs=64.0
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hccc-c---cc-cccCCCCCCC---CCccchhhc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RGIL-G---AF-HDWCEPFSTY---PRTYDLLHA 535 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RGli-g---~~-~~~~~~f~ty---prtyDl~H~ 535 (617)
++|||++||+|+|+-+.....-- .|+-+|.. .-+..+-+ -|+- . ++ .|..+.+..+ .++||+|=+
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga~--~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGCS--QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 68999999999998553333220 12223333 33332211 1331 1 11 1222222122 247899876
Q ss_pred cccccccccCCCC-------CChhhHHhhhhhcccCCceEEEe------cChHHHHHHHhhhhcCCceEEEe
Q 039518 536 NHLFSHYKNRGEV-------CSLEDIMLEMDLIIRPQGFIIIR------DEKSLITRIRDLAPKFLWDVELH 594 (617)
Q Consensus 536 ~~~~s~~~~~~~~-------c~~~~~l~e~dRilRP~G~~i~~------d~~~~~~~~~~~~~~~~W~~~~~ 594 (617)
+--+-. .++ ....+++.-.-++|+|||.++.. +..+..+-+.+-+..-..++++.
T Consensus 300 DPP~f~----~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l 367 (396)
T PRK15128 300 DPPKFV----ENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_pred CCCCCC----CChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 633210 111 23445666677999999999984 23456666666666666666655
No 413
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=81.36 E-value=1.9 Score=46.13 Aligned_cols=94 Identities=12% Similarity=0.221 Sum_probs=53.2
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhcc-c------cccccc-CCCCCCCCCccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGI-L------GAFHDW-CEPFSTYPRTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGl-i------g~~~~~-~~~f~typrtyDl~H~~~~~ 539 (617)
.+|||+|||.|.++..|..... +|+-.|-. +-|.++-+|.- . +.-.++ +..+...+.+||+|=+..++
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~vL 222 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDVL 222 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCEE
Confidence 4799999999999999987653 34444555 66666655521 0 011111 11122335889998777777
Q ss_pred cccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 540 SHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
.+| ... .+..++-.+-++ .+||. ||.
T Consensus 223 ~H~---p~~-~~~~ll~~l~~l-~~g~l-iIs 248 (315)
T PLN02585 223 IHY---PQD-KADGMIAHLASL-AEKRL-IIS 248 (315)
T ss_pred Eec---CHH-HHHHHHHHHHhh-cCCEE-EEE
Confidence 665 221 122344455553 45555 444
No 414
>PLN02366 spermidine synthase
Probab=80.87 E-value=1.3 Score=47.39 Aligned_cols=101 Identities=15% Similarity=0.182 Sum_probs=53.7
Q ss_pred CCeeeEEeccccccchhhhccCCC-eEEEEeccCCCCchhHHHHh------hcc----cc-cccccCCCCCCC-CCccch
Q 039518 466 TEIRNAMDMNAYCGGFAVALNSLP-VWVMNIVPISMKNTLSAIYN------RGI----LG-AFHDWCEPFSTY-PRTYDL 532 (617)
Q Consensus 466 ~~~Rn~mDm~~~~g~faa~l~~~~-v~vmnv~p~~~~~~l~~~~~------RGl----ig-~~~~~~~~f~ty-prtyDl 532 (617)
..-++|||+|+|.|+.+..+.+.| |.-+-+|=.|.. -+.++-+ .|+ +- +..|=-+-.... ++.||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~-Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKM-VIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHH-HHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 447899999999999999998765 433323332221 1111111 011 00 111100001223 368999
Q ss_pred hhccccccccccCCCCC--ChhhHHhhhhhcccCCceEEEe
Q 039518 533 LHANHLFSHYKNRGEVC--SLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 533 ~H~~~~~s~~~~~~~~c--~~~~~l~e~dRilRP~G~~i~~ 571 (617)
|-.+. +... ...- --..++-.+-|.|+|||.++..
T Consensus 169 Ii~D~-~dp~---~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDS-SDPV---GPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcC-CCCC---CchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 97543 2211 1000 0135677889999999999874
No 415
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.70 E-value=6.4 Score=42.33 Aligned_cols=98 Identities=12% Similarity=0.097 Sum_probs=64.7
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC---------CCCCCeeEE
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP---------YPSSSFEMV 296 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp---------f~d~sFDlV 296 (617)
...|.+||-+|+|.=.+...+..+..-+.++..+|+++..++.|++-|..+........... +....||+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 46788999999996544444444433344778889999999999998765544332211111 222448888
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+-.. -.+..++.....+|+||.+++.+
T Consensus 247 ~dCs-------G~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 247 FDCS-------GAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred EEcc-------CchHHHHHHHHHhccCCEEEEec
Confidence 7321 23446777788999999988875
No 416
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=80.43 E-value=2.5 Score=41.90 Aligned_cols=107 Identities=13% Similarity=0.216 Sum_probs=60.6
Q ss_pred eEEeccccccchhhhccCCCeEEEEeccCCCC----chhHHHHhh-cccc----cccccCCCCCCCCCccchhhcccccc
Q 039518 470 NAMDMNAYCGGFAVALNSLPVWVMNIVPISMK----NTLSAIYNR-GILG----AFHDWCEPFSTYPRTYDLLHANHLFS 540 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~----~~l~~~~~R-Glig----~~~~~~~~f~typrtyDl~H~~~~~s 540 (617)
+|||.|||-|.+--.|.+...-- -.+-+|=. .--+-|.|| |+-- .-.|.-.+ ...+.-||+||--|-+.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCcee
Confidence 89999999999988887654210 01111111 122334444 3321 01111111 22457899999777776
Q ss_pred ccccCCCCCC------hhhHHhhhhhcccCCceEEEecChHHHHHHHh
Q 039518 541 HYKNRGEVCS------LEDIMLEMDLIIRPQGFIIIRDEKSLITRIRD 582 (617)
Q Consensus 541 ~~~~~~~~c~------~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~ 582 (617)
.. +-|. +..++==++++|+|||.|+|..=.-..+++.+
T Consensus 148 Ai----sLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~ 191 (227)
T KOG1271|consen 148 AI----SLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVE 191 (227)
T ss_pred ee----ecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHH
Confidence 42 2232 24567778999999999999854433334333
No 417
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=80.15 E-value=2.1 Score=43.75 Aligned_cols=116 Identities=13% Similarity=0.160 Sum_probs=69.2
Q ss_pred eeEEeccccccchhhhccCC--CeEEEEeccCCC--CchhHHHHhhcc--cccc-cccCCCCCCCC-C-ccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL--PVWVMNIVPISM--KNTLSAIYNRGI--LGAF-HDWCEPFSTYP-R-TYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~--~~~l~~~~~RGl--ig~~-~~~~~~f~typ-r-tyDl~H~~~~~ 539 (617)
..++++|||.|.|-+.|..+ .+-..-|-.... -.-+.-|-+.|| |-++ +|=-+-+..++ . +.|-|+ =.|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~--i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIY--INF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEE--EEC
Confidence 47899999999999998532 232223322222 255666778887 4444 22222233333 3 777776 233
Q ss_pred c-ccc---cCCCCCChhhHHhhhhhcccCCceEEEe-cChHHHHH-HHhhhhc
Q 039518 540 S-HYK---NRGEVCSLEDIMLEMDLIIRPQGFIIIR-DEKSLITR-IRDLAPK 586 (617)
Q Consensus 540 s-~~~---~~~~~c~~~~~l~e~dRilRP~G~~i~~-d~~~~~~~-~~~~~~~ 586 (617)
. -|- ..+.|=--...|-++-|+|+|||.+-+. |..+..+. +......
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~ 180 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEH 180 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhc
Confidence 3 121 1234433457888999999999999997 66655555 5544433
No 418
>PLN02476 O-methyltransferase
Probab=79.89 E-value=2.2 Score=44.98 Aligned_cols=131 Identities=13% Similarity=0.155 Sum_probs=70.4
Q ss_pred CeeeEEeccccccchhhhccC----C-CeEEEEeccCCCCchhHHHHhhccc---cc-ccccCCCCCCC-----CCccch
Q 039518 467 EIRNAMDMNAYCGGFAVALNS----L-PVWVMNIVPISMKNTLSAIYNRGIL---GA-FHDWCEPFSTY-----PRTYDL 532 (617)
Q Consensus 467 ~~Rn~mDm~~~~g~faa~l~~----~-~v~vmnv~p~~~~~~l~~~~~RGli---g~-~~~~~~~f~ty-----prtyDl 532 (617)
.-++||++|+++|..+.+|.. . .|+++=.-|....-.-+.+-+-|+- =+ ..|-.+.++.+ +.+||+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 368999999999998877743 2 2444433332111111223333431 00 11111222211 357888
Q ss_pred hhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC-------------hH---HHHHHHhhhhcCCceEEEeec
Q 039518 533 LHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE-------------KS---LITRIRDLAPKFLWDVELHSL 596 (617)
Q Consensus 533 ~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~-------------~~---~~~~~~~~~~~~~W~~~~~~~ 596 (617)
|=.+.==. ....++-+.=+.|||||.+|+-+- .. +-+-.+.++..=++++.+.-.
T Consensus 198 VFIDa~K~---------~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPi 268 (278)
T PLN02476 198 AFVDADKR---------MYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPI 268 (278)
T ss_pred EEECCCHH---------HHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEe
Confidence 76333222 234566666689999999998511 11 122233355566788877753
Q ss_pred cccCCCceeEEEEEec
Q 039518 597 ENREKKMESVLICRKK 612 (617)
Q Consensus 597 e~~~~~~~~~l~~~k~ 612 (617)
.+.++|++|+
T Consensus 269 ------gDGl~i~~K~ 278 (278)
T PLN02476 269 ------GDGMTICRKR 278 (278)
T ss_pred ------CCeeEEEEEC
Confidence 3678888874
No 419
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=79.73 E-value=7.6 Score=42.38 Aligned_cols=97 Identities=14% Similarity=0.103 Sum_probs=70.2
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh-----CCCcEEEEecCCCCCCC-CCCeeEEEecccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER-----GIGAMISALSTKQLPYP-SSSFEMVHCSRCR 302 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er-----g~~~~~~~~d~~~Lpf~-d~sFDlV~~s~~l 302 (617)
..+|||.=+|+|.=+...+...... .+...|+++.+++.++++ +.+..+...|+..+-.. ...||+|= +
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~ID----i 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVID----I 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEe----c
Confidence 3459999999998888777653332 677899999999998876 23344444454333221 36799884 3
Q ss_pred cccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 303 VDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 303 ~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
-++- .|..++..+.+.+|.||++.++..
T Consensus 128 DPFG-SPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 128 DPFG-SPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred CCCC-CCchHHHHHHHHhhcCCEEEEEec
Confidence 4554 678899999999999999999854
No 420
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=79.41 E-value=7.3 Score=45.73 Aligned_cols=57 Identities=9% Similarity=-0.023 Sum_probs=39.8
Q ss_pred CCeeEEEecccccccccch----HHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 291 SSFEMVHCSRCRVDWHAND----GILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 291 ~sFDlV~~s~~l~h~~~d~----~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
..||+++.-. +-+- .+| ..++.++.|+++|||.|.=.+. -..+.+-+...||++...
T Consensus 165 ~~~d~~~lD~-FsP~-~np~~W~~~~~~~l~~~~~~~~~~~t~t~------------a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 165 ARADAWFLDG-FAPA-KNPDMWSPNLFNALARLARPGATLATFTS------------AGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred ccccEEEeCC-CCCc-cChhhccHHHHHHHHHHhCCCCEEEEeeh------------HHHHHHHHHHcCCeeeec
Confidence 5699998431 2121 133 5699999999999999985331 334888889999987653
No 421
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=79.26 E-value=2.2 Score=43.02 Aligned_cols=101 Identities=14% Similarity=0.192 Sum_probs=51.8
Q ss_pred HHHHHhccCCCCCeeeEEeccccccchhhhcc---CCCeEEEEeccCCCC-chhHHHHhh-cc---cccccccCCCCCCC
Q 039518 455 RHYWQLMNVNETEIRNAMDMNAYCGGFAVALN---SLPVWVMNIVPISMK-NTLSAIYNR-GI---LGAFHDWCEPFSTY 526 (617)
Q Consensus 455 ~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~---~~~v~vmnv~p~~~~-~~l~~~~~R-Gl---ig~~~~~~~~f~ty 526 (617)
......|.+++|. .|||+|||.|=++|.|. .+.--|.+|-....- ..-.-.+++ |+ .-+.+|=.+..+..
T Consensus 62 a~~l~~L~l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 62 ARMLEALDLKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHhcCCCC--EEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 4455556688884 79999999998887774 332234444322221 222222222 33 12333433333321
Q ss_pred CCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEE
Q 039518 527 PRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIII 570 (617)
Q Consensus 527 prtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~ 570 (617)
-.||.||...-.. .+..-++|. |+|||.+|+
T Consensus 140 -apfD~I~v~~a~~---------~ip~~l~~q---L~~gGrLV~ 170 (209)
T PF01135_consen 140 -APFDRIIVTAAVP---------EIPEALLEQ---LKPGGRLVA 170 (209)
T ss_dssp --SEEEEEESSBBS---------S--HHHHHT---EEEEEEEEE
T ss_pred -CCcCEEEEeeccc---------hHHHHHHHh---cCCCcEEEE
Confidence 3699999544333 233445554 999999987
No 422
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=78.77 E-value=12 Score=39.81 Aligned_cols=92 Identities=13% Similarity=0.033 Sum_probs=57.3
Q ss_pred ccCCCCeEEEECCC-CcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 225 RSAGVFQVLDVGCG-VASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 225 r~~~g~rVLDIGCG-tG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
.+.++.+||=.|+| .|.++..+++. |.. +..++.+++..+.+++.|....+. ..+. ..+.+|+++-...
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~---vi~~~~~~~~~~~a~~~Ga~~vi~---~~~~--~~~~~d~~i~~~~- 232 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQGAT---VHVMTRGAAARRLALALGAASAGG---AYDT--PPEPLDAAILFAP- 232 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCCCe---EEEEeCChHHHHHHHHhCCceecc---cccc--CcccceEEEECCC-
Confidence 35678889999974 33444444443 543 444567777788898888643221 1111 1235887653211
Q ss_pred cccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 303 VDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 303 ~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
. ...+....+.|++||.+++.+.
T Consensus 233 -----~-~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 233 -----A-GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred -----c-HHHHHHHHHhhCCCcEEEEEec
Confidence 1 2478889999999999998763
No 423
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=78.47 E-value=9.4 Score=39.99 Aligned_cols=120 Identities=11% Similarity=0.115 Sum_probs=75.2
Q ss_pred ceecCCCCCcccCChhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHH
Q 039518 192 LWWFPGGGTHFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALE 271 (617)
Q Consensus 192 ~~~Fpgggt~F~~~a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~e 271 (617)
++.||..+.+ +..-+.-+.+..+++...-.-++.+|+...|+|+-.|.++-.|.+++.. ++.+|.. .|.+....
T Consensus 177 RLKfp~dAPS--RStLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr~m~---V~aVDng-~ma~sL~d 250 (358)
T COG2933 177 RLKFPADAPS--RSTLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKRNMR---VYAVDNG-PMAQSLMD 250 (358)
T ss_pred cccCCCCCCc--hhhhhHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhcceE---EEEeccc-hhhhhhhc
Confidence 4556655432 3334566677777776655567899999999999999999999998764 5555643 33333333
Q ss_pred hCCCcEEEEecCCCCCCCCCCeeEEEecccccccccchHHHHHHHHHhccCC
Q 039518 272 RGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPN 323 (617)
Q Consensus 272 rg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPG 323 (617)
.|. +.....|..++.-.....|-.+|-. .+.|...-.-+...|..|
T Consensus 251 tg~-v~h~r~DGfk~~P~r~~idWmVCDm-----VEkP~rv~~li~~Wl~nG 296 (358)
T COG2933 251 TGQ-VTHLREDGFKFRPTRSNIDWMVCDM-----VEKPARVAALIAKWLVNG 296 (358)
T ss_pred ccc-eeeeeccCcccccCCCCCceEEeeh-----hcCcHHHHHHHHHHHHcc
Confidence 343 3333334333321245689888753 345666666666666654
No 424
>PRK10742 putative methyltransferase; Provisional
Probab=78.43 E-value=3.7 Score=42.54 Aligned_cols=67 Identities=15% Similarity=0.086 Sum_probs=41.9
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHH---HHHHhC-----------CCcEEEEecCCC-CCCCCCCeeE
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQ---FALERG-----------IGAMISALSTKQ-LPYPSSSFEM 295 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq---~A~erg-----------~~~~~~~~d~~~-Lpf~d~sFDl 295 (617)
+|||.=+|.|..+..++.+|.. ++.+|-++.... ...++. .++.+...|..+ |.-...+||+
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~---V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDV 167 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcE
Confidence 6999999999999999999875 445566655543 333331 124444455322 2212347999
Q ss_pred EEecc
Q 039518 296 VHCSR 300 (617)
Q Consensus 296 V~~s~ 300 (617)
|+.--
T Consensus 168 VYlDP 172 (250)
T PRK10742 168 VYLDP 172 (250)
T ss_pred EEECC
Confidence 99653
No 425
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=78.35 E-value=4.9 Score=42.89 Aligned_cols=45 Identities=22% Similarity=0.093 Sum_probs=37.5
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER 272 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er 272 (617)
.+++.++|.=+|.|..+..+++.-.. ..+.++|.++.+++.|+++
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~ 63 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKER 63 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHH
Confidence 45567999999999999999876323 4788999999999999875
No 426
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=77.87 E-value=29 Score=36.11 Aligned_cols=115 Identities=13% Similarity=0.139 Sum_probs=66.1
Q ss_pred HHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccC-CCc--EEEeeecCCcH-HHHHHHHHhCCCcEEEEecCCCCC
Q 039518 212 RLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPL-DIQ--TMSFAPKDGHE-NQIQFALERGIGAMISALSTKQLP 287 (617)
Q Consensus 212 ~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~-gv~--~v~v~~iDis~-~~lq~A~erg~~~~~~~~d~~~Lp 287 (617)
.|+.-+--....+.++||.+||=+|+++|..-....+. +.. +..++-.+.+- ..+..|++|- ++.-++-|+ +.|
T Consensus 140 KLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRt-NiiPIiEDA-rhP 217 (317)
T KOG1596|consen 140 KLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRT-NIIPIIEDA-RHP 217 (317)
T ss_pred HHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccC-CceeeeccC-CCc
Confidence 34443333345677899999999999999876666554 222 22333333333 3445566553 333333343 333
Q ss_pred C----CCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 288 Y----PSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 288 f----~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
. .-.-.|+|++- +. -++....+..++.-.||+||.++++.-
T Consensus 218 ~KYRmlVgmVDvIFaD-va--qpdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 218 AKYRMLVGMVDVIFAD-VA--QPDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred hheeeeeeeEEEEecc-CC--CchhhhhhhhhhhhhhccCCeEEEEEe
Confidence 2 12357777743 21 122234567788899999999999863
No 427
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=77.14 E-value=6.3 Score=43.76 Aligned_cols=112 Identities=13% Similarity=0.131 Sum_probs=59.9
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHH----hhccc---ccccccCCCCCCCC---Cccchhhccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIY----NRGIL---GAFHDWCEPFSTYP---RTYDLLHANH 537 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~----~RGli---g~~~~~~~~f~typ---rtyDl~H~~~ 537 (617)
..|+|++||+|.|+..|.+.--- |+-.|.. +-+..+- ..|+- -+..|..+.++.++ .+||+|=.+
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~~---V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d- 369 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAKS---VVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD- 369 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCCE---EEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC-
Confidence 47999999999999998754222 2333332 2332222 22321 12223332223222 357766421
Q ss_pred cccccccCCCCCCh-hhHHhhhhhcccCCceEEEecChHHHHHHHhhhhcCCceEEE
Q 039518 538 LFSHYKNRGEVCSL-EDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVEL 593 (617)
Q Consensus 538 ~~s~~~~~~~~c~~-~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~ 593 (617)
..|-.+ ..++-++.+ |+|+|.++++-++..+.+--+.+..-.|++..
T Consensus 370 --------PPr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~~ 417 (431)
T TIGR00479 370 --------PPRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGITW 417 (431)
T ss_pred --------cCCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEEE
Confidence 333332 344444444 88999999997777765554444444565543
No 428
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=76.94 E-value=1.3 Score=47.64 Aligned_cols=111 Identities=17% Similarity=0.323 Sum_probs=57.4
Q ss_pred CeeeEEeccccccchhhhccCCCe-EEEEeccCCCCchhHHHHhhc---------------ccccccccCCCCCC-----
Q 039518 467 EIRNAMDMNAYCGGFAVALNSLPV-WVMNIVPISMKNTLSAIYNRG---------------ILGAFHDWCEPFST----- 525 (617)
Q Consensus 467 ~~Rn~mDm~~~~g~faa~l~~~~v-~vmnv~p~~~~~~l~~~~~RG---------------lig~~~~~~~~f~t----- 525 (617)
.-.+||||+||=||=.---...+| -++-+=+.. ..|.-+.+|= +....+ ....|..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~--~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~-~~D~f~~~l~~~ 138 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISE--ESIEEARERYKQLKKRNNSKQYRFDFIAEFI-AADCFSESLREK 138 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-H--HHHHHHHHHHHHHHTSTT-HTSEECCEEEEE-ESTTCCSHHHCT
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCH--HHHHHHHHHHHHhccccccccccccchhhee-ccccccchhhhh
Confidence 457899999999984333333343 333343333 3333344432 222211 1222322
Q ss_pred CC---CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe--cChHHHHHHHh
Q 039518 526 YP---RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR--DEKSLITRIRD 582 (617)
Q Consensus 526 yp---rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~--d~~~~~~~~~~ 582 (617)
|+ +.||+|=|-..+ || .-.+.=.+..+|--+-.-|||||+||.. |...++.++++
T Consensus 139 ~~~~~~~FDvVScQFal-HY-~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~ 198 (331)
T PF03291_consen 139 LPPRSRKFDVVSCQFAL-HY-AFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLRE 198 (331)
T ss_dssp SSSTTS-EEEEEEES-G-GG-GGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC
T ss_pred ccccCCCcceeehHHHH-HH-hcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHh
Confidence 22 599986543222 12 1122223447888899999999999987 76667666666
No 429
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=76.82 E-value=16 Score=38.15 Aligned_cols=97 Identities=18% Similarity=0.123 Sum_probs=57.0
Q ss_pred ccCCCCeEEEECCC-CcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCC----CCCCCCeeEEEe
Q 039518 225 RSAGVFQVLDVGCG-VASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQL----PYPSSSFEMVHC 298 (617)
Q Consensus 225 r~~~g~rVLDIGCG-tG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~L----pf~d~sFDlV~~ 298 (617)
++.++.+||-+|+| .|..+..+++. |... +..++.++...+.+++.+.. .+...+.... ....+.+|+|+.
T Consensus 156 ~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~--v~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~vd~v~~ 232 (334)
T cd08234 156 GIKPGDSVLVFGAGPIGLLLAQLLKLNGASR--VTVAEPNEEKLELAKKLGAT-ETVDPSREDPEAQKEDNPYGFDVVIE 232 (334)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcE--EEEECCCHHHHHHHHHhCCe-EEecCCCCCHHHHHHhcCCCCcEEEE
Confidence 34567889999864 24444444443 5441 33345567777777776654 1111111110 113456999985
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.. .....+.++.+.|+++|.++....
T Consensus 233 ~~-------~~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 233 AT-------GVPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred CC-------CChHHHHHHHHHHhcCCEEEEEec
Confidence 31 123578888999999999987654
No 430
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=76.43 E-value=4 Score=41.18 Aligned_cols=97 Identities=10% Similarity=0.049 Sum_probs=48.7
Q ss_pred eEEEECCCCcHHHHHhccC----CCcEEEeeecCCcHHHH-HHHHHh---CCCcEEEEecCCCCC-------C-CCCCee
Q 039518 231 QVLDVGCGVASFSAFLLPL----DIQTMSFAPKDGHENQI-QFALER---GIGAMISALSTKQLP-------Y-PSSSFE 294 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~----gv~~v~v~~iDis~~~l-q~A~er---g~~~~~~~~d~~~Lp-------f-~d~sFD 294 (617)
.|+|+|.-.|.-+.++++. +... .|.++|++.... +.|.+. ...+.+..+|..+.. . ....-.
T Consensus 35 ~IIE~Gi~~GGSli~~A~ml~~~~~~~-~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~v 113 (206)
T PF04989_consen 35 LIIETGIAHGGSLIFWASMLELLGGKG-KVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHPV 113 (206)
T ss_dssp EEEEE--TTSHHHHHHHHHHHHTT----EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SSE
T ss_pred eEEEEecCCCchHHHHHHHHHHhCCCc-eEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCce
Confidence 3999999888766655432 2222 566667743222 222222 245788888754432 1 112344
Q ss_pred EEEecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 295 MVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 295 lV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+|+-= ..|..++-...|+....+|++|+|+++.+
T Consensus 114 lVilD--s~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 114 LVILD--SSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp EEEES--S----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred EEEEC--CCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 55532 34555577788888999999999999954
No 431
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=76.26 E-value=16 Score=38.63 Aligned_cols=158 Identities=16% Similarity=0.189 Sum_probs=85.8
Q ss_pred chhhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccC-CC-eEEEEeccCCCC-chhHHH-------Hhhccccc
Q 039518 446 DTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNS-LP-VWVMNIVPISMK-NTLSAI-------YNRGILGA 515 (617)
Q Consensus 446 d~~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~-~~-v~vmnv~p~~~~-~~l~~~-------~~RGlig~ 515 (617)
+|+.|-+.|-.-.+......+. -++|.|||.|.-+-+|+. .| .-|.- +|-. .-+.++ ---|-|++
T Consensus 129 ETEE~V~~Vid~~~~~~~~~~~--~ildlgtGSGaIslsll~~L~~~~v~A---iD~S~~Ai~La~eN~qr~~l~g~i~v 203 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSKHT--HILDLGTGSGAISLSLLHGLPQCTVTA---IDVSKAAIKLAKENAQRLKLSGRIEV 203 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcccc--eEEEecCCccHHHHHHHhcCCCceEEE---EeccHHHHHHHHHHHHHHhhcCceEE
Confidence 5788988885533322222222 799999999988877753 23 22221 1211 222222 22456888
Q ss_pred ccc--cCCCCCCCC---Cccchhhccc--cccc-----------cc-----cCCCCCCh--hhHHhhhhhcccCCceEEE
Q 039518 516 FHD--WCEPFSTYP---RTYDLLHANH--LFSH-----------YK-----NRGEVCSL--EDIMLEMDLIIRPQGFIII 570 (617)
Q Consensus 516 ~~~--~~~~f~typ---rtyDl~H~~~--~~s~-----------~~-----~~~~~c~~--~~~l~e~dRilRP~G~~i~ 570 (617)
.|. --+.|-+|| .+||+|=++- +++. |. .....|.. ..+..=.-|.|+|||++++
T Consensus 204 ~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 204 IHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred EecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 876 344566666 7888877652 2221 10 01111221 2556667899999999999
Q ss_pred e-----cChHHHHHHHhhh-hcCCceEEEeeccccCCCceeEEEEEe
Q 039518 571 R-----DEKSLITRIRDLA-PKFLWDVELHSLENREKKMESVLICRK 611 (617)
Q Consensus 571 ~-----d~~~~~~~~~~~~-~~~~W~~~~~~~e~~~~~~~~~l~~~k 611 (617)
. +....+..+..-. +.--|.+.+.. +-.+.+++++..+
T Consensus 284 e~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~---Df~~~~Rfv~i~r 327 (328)
T KOG2904|consen 284 ELVERKEHSYLVRIWMISLKDDSNGKAAVVS---DFAGRPRFVIIHR 327 (328)
T ss_pred EecccccCcHHHHHHHHhchhhccchhheee---cccCCcceEEEEe
Confidence 6 3344444444333 33445555543 2334566666544
No 432
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=76.10 E-value=2.1 Score=48.05 Aligned_cols=99 Identities=12% Similarity=0.116 Sum_probs=70.7
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecCC----CCCCCCCCeeEEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMISALSTK----QLPYPSSSFEMVH 297 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~~----~Lpf~d~sFDlV~ 297 (617)
++.+|||.=|++|.-+...+..-..+..+.+.|.+++.++..+++ ++. +.....|+. ..+-.+..||+|.
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 344699999999998888877644456888999999998876654 111 122223322 2233467899998
Q ss_pred ecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 298 CSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 298 ~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+-++- .+..+|..+.+.++.||.|.++..
T Consensus 189 ----LDPyG-s~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 189 ----LDPYG-SPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred ----cCCCC-CccHHHHHHHHHhhcCCEEEEEec
Confidence 34554 577899999999999999999854
No 433
>PHA03411 putative methyltransferase; Provisional
Probab=75.87 E-value=2.2 Score=44.96 Aligned_cols=99 Identities=12% Similarity=0.132 Sum_probs=56.4
Q ss_pred eeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhhcccccccccCCCCCCC--CCccchhhcccccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNRGILGAFHDWCEPFSTY--PRTYDLLHANHLFSHYKN 544 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~RGlig~~~~~~~~f~ty--prtyDl~H~~~~~s~~~~ 544 (617)
.+|||+|||.|.|+..+..+ +- .+|+-.|.. ..+..+-++ +.. ..-.+.-+..+ +++||+|=++--|-....
T Consensus 66 grVLDLGcGsGilsl~la~r~~~--~~V~gVDisp~al~~Ar~n-~~~-v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKP--EKIVCVELNPEFARIGKRL-LPE-AEWITSDVFEFESNEKFDVVISNPPFGKINT 141 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHh-CcC-CEEEECchhhhcccCCCcEEEEcCCccccCc
Confidence 47999999999998877543 11 122333433 444444332 211 11012222223 368999988766654211
Q ss_pred C--CC-----------CC-ChhhHHhhhhhcccCCceEEEe
Q 039518 545 R--GE-----------VC-SLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 545 ~--~~-----------~c-~~~~~l~e~dRilRP~G~~i~~ 571 (617)
. .. .| .+...+-..-++|.|+|.+++-
T Consensus 142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 0 01 12 2567888999999999987764
No 434
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=75.75 E-value=11 Score=42.91 Aligned_cols=119 Identities=17% Similarity=0.205 Sum_probs=75.2
Q ss_pred HHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccC---CCcEEEeeecCCcHHHHHHHHHh----CCC--cEE
Q 039518 208 EYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPL---DIQTMSFAPKDGHENQIQFALER----GIG--AMI 278 (617)
Q Consensus 208 ~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~---gv~~v~v~~iDis~~~lq~A~er----g~~--~~~ 278 (617)
+..+.|.+++.. .+..+|.|-.||+|.+.....+. ...-..+.+.+++......|+-+ |++ +.+
T Consensus 173 ~v~~liv~~l~~-------~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 173 EVSELIVELLDP-------EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred HHHHHHHHHcCC-------CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence 445555555532 23447999999999876555432 11124788999999998888765 443 345
Q ss_pred EEecCCCCCC-----CCCCeeEEEecccc--ccccc----------------------chHHHHHHHHHhccCCeEEEEE
Q 039518 279 SALSTKQLPY-----PSSSFEMVHCSRCR--VDWHA----------------------NDGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 279 ~~~d~~~Lpf-----~d~sFDlV~~s~~l--~h~~~----------------------d~~~~L~el~RvLrPGG~Liis 329 (617)
..++.-.-|. ..+.||.|+++--. -.|.. ....+++.+...|+|||+..|+
T Consensus 246 ~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 246 RHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred cccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 5555433332 33679999986322 11110 1145799999999999988877
Q ss_pred eCCC
Q 039518 330 APPA 333 (617)
Q Consensus 330 ~p~~ 333 (617)
.|..
T Consensus 326 l~~g 329 (489)
T COG0286 326 LPDG 329 (489)
T ss_pred ecCC
Confidence 7643
No 435
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=75.66 E-value=58 Score=33.32 Aligned_cols=116 Identities=10% Similarity=0.114 Sum_probs=73.2
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecCCCCCCC-CCCeeEEEeccccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMISALSTKQLPYP-SSSFEMVHCSRCRV 303 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~~~Lpf~-d~sFDlV~~s~~l~ 303 (617)
++.||||--|.+..+|.+.+..- .+...|+++..++.|.+. +.. +....+|. -.++. +..+|+|+-+.+.-
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~~~-~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg-l~~l~~~d~~d~ivIAGMGG 96 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNPAS-TAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG-LAVLELEDEIDVIVIAGMGG 96 (226)
T ss_pred ceeeccCchhHhHHHHHhcCCcc-eEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC-ccccCccCCcCEEEEeCCcH
Confidence 39999999999999999987543 455668888888888664 222 33344443 11232 34699998653221
Q ss_pred ccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 304 DWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 304 h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
. -....|.+-...|+.=-++++- | ... -..+.+.+...+|.+...
T Consensus 97 ~---lI~~ILee~~~~l~~~~rlILQ-P-------n~~--~~~LR~~L~~~~~~I~~E 141 (226)
T COG2384 97 T---LIREILEEGKEKLKGVERLILQ-P-------NIH--TYELREWLSANSYEIKAE 141 (226)
T ss_pred H---HHHHHHHHhhhhhcCcceEEEC-C-------CCC--HHHHHHHHHhCCceeeee
Confidence 1 2345666666666644456552 2 111 224888899999998873
No 436
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=75.25 E-value=2.4 Score=38.51 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=23.1
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEe
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSF 256 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v 256 (617)
+.....|+|||.|.+.--|.+.|.....+
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~Gi 86 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGWGI 86 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCcccc
Confidence 34459999999999998888888766544
No 437
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=74.35 E-value=16 Score=38.11 Aligned_cols=96 Identities=10% Similarity=0.082 Sum_probs=56.8
Q ss_pred ccCCCCeEEEECCC-CcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 225 RSAGVFQVLDVGCG-VASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 225 r~~~g~rVLDIGCG-tG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
.+.++.+||-+|+| .|..+..+++. |. .+...+.++...+.+++.+....+............+.+|+++...
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G~---~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~-- 233 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAMGF---ETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTV-- 233 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECC--
Confidence 34567789999886 56555555554 54 3445566777777776666432221111000000124589887431
Q ss_pred cccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 303 VDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 303 ~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.....+.++.+.|+++|.++..+
T Consensus 234 -----~~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 234 -----VSGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred -----CcHHHHHHHHHhcccCCEEEEEC
Confidence 11346788899999999998865
No 438
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=74.29 E-value=3.3 Score=39.65 Aligned_cols=93 Identities=13% Similarity=0.140 Sum_probs=47.5
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhc----cccccc-ccCCCCCCCC-Cccchhhccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRG----ILGAFH-DWCEPFSTYP-RTYDLLHANHLFSH 541 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG----lig~~~-~~~~~f~typ-rtyDl~H~~~~~s~ 541 (617)
.+|+|+|||.|.++..|.++.- .|.-.|-. ..+..+-++- =+-+++ |. +.++ ++ ..||.|=++--|.
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~-~~~~-~~~~~~d~vi~n~Py~- 88 (169)
T smart00650 15 DTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAADNLTVIHGDA-LKFD-LPKLQPYKVVGNLPYN- 88 (169)
T ss_pred CEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccCCCEEEEECch-hcCC-ccccCCCEEEECCCcc-
Confidence 4799999999999999987742 23333333 3343333331 011221 22 1121 22 2467664333332
Q ss_pred cccCCCCCChhhHHhhhhhcccCCceEEEecC
Q 039518 542 YKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 542 ~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
... .+..-+++... +.++|+++++..
T Consensus 89 ----~~~-~~i~~~l~~~~-~~~~~~l~~q~e 114 (169)
T smart00650 89 ----IST-PILFKLLEEPP-AFRDAVLMVQKE 114 (169)
T ss_pred ----cHH-HHHHHHHhcCC-CcceEEEEEEHH
Confidence 111 22233444433 569999999853
No 439
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=73.72 E-value=39 Score=33.68 Aligned_cols=142 Identities=16% Similarity=0.224 Sum_probs=77.7
Q ss_pred ccCccccccc--hhhHHHHHHH-HHHhccCCCCCeeeEEeccccccchhhhcc--CCCeEEEEeccCCCCchhHHHHhhc
Q 039518 437 GITQEEFTTD--TSFWQDQVRH-YWQLMNVNETEIRNAMDMNAYCGGFAVALN--SLPVWVMNIVPISMKNTLSAIYNRG 511 (617)
Q Consensus 437 ~~~~~~f~~d--~~~w~~~v~~-y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~--~~~v~vmnv~p~~~~~~l~~~~~RG 511 (617)
|+..+.|..| ...=|+-|.. =...|.+.++. .++|+|||.||-+--+. ...-=|..+ +....-.-..+|-
T Consensus 3 gipD~~F~~~~~~p~TK~EIRal~ls~L~~~~g~--~l~DIGaGtGsi~iE~a~~~p~~~v~AI---e~~~~a~~~~~~N 77 (187)
T COG2242 3 GIPDELFERDEGGPMTKEEIRALTLSKLRPRPGD--RLWDIGAGTGSITIEWALAGPSGRVIAI---ERDEEALELIERN 77 (187)
T ss_pred CCCchhhccCCCCCCcHHHHHHHHHHhhCCCCCC--EEEEeCCCccHHHHHHHHhCCCceEEEE---ecCHHHHHHHHHH
Confidence 4555667766 2222344433 23445677776 79999999999764332 333233222 2221111122222
Q ss_pred c--cc------cccccCCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe-cChHHHHHHHh
Q 039518 512 I--LG------AFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR-DEKSLITRIRD 582 (617)
Q Consensus 512 l--ig------~~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~-d~~~~~~~~~~ 582 (617)
. .| +-.+==+.++..| ++| .+|- ...=.++.||--...-|||||-+|.. -..+...++-+
T Consensus 78 ~~~fg~~n~~vv~g~Ap~~L~~~~-~~d-----aiFI-----GGg~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~ 146 (187)
T COG2242 78 AARFGVDNLEVVEGDAPEALPDLP-SPD-----AIFI-----GGGGNIEEILEAAWERLKPGGRLVANAITLETLAKALE 146 (187)
T ss_pred HHHhCCCcEEEEeccchHhhcCCC-CCC-----EEEE-----CCCCCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHH
Confidence 1 11 0011112233333 344 4454 33367889999999999999999997 45566666666
Q ss_pred hhhcCCc-eEEEe
Q 039518 583 LAPKFLW-DVELH 594 (617)
Q Consensus 583 ~~~~~~W-~~~~~ 594 (617)
..+.+.+ ++.-+
T Consensus 147 ~~~~~g~~ei~~v 159 (187)
T COG2242 147 ALEQLGGREIVQV 159 (187)
T ss_pred HHHHcCCceEEEE
Confidence 6677777 55444
No 440
>PHA03412 putative methyltransferase; Provisional
Probab=73.00 E-value=4.5 Score=41.73 Aligned_cols=97 Identities=20% Similarity=0.162 Sum_probs=50.6
Q ss_pred eeEEeccccccchhhhccCC----CeEEEEeccCCCC-chhHHHHhhcccccccccCCCCCCC--CCccchhhccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL----PVWVMNIVPISMK-NTLSAIYNRGILGAFHDWCEPFSTY--PRTYDLLHANHLFSH 541 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~----~v~vmnv~p~~~~-~~l~~~~~RGlig~~~~~~~~f~ty--prtyDl~H~~~~~s~ 541 (617)
..|+|+|||.|.|+.++..+ +.. +|.-.+-. +.+..+- +.+.. .+-.+.-|-.+ +..||+|=++==|-.
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~--~V~aVEID~~Al~~Ar-~n~~~-~~~~~~D~~~~~~~~~FDlIIsNPPY~~ 126 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPR--EIVCVELNHTYYKLGK-RIVPE-ATWINADALTTEFDTLFDMAISNPPFGK 126 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCc--EEEEEECCHHHHHHHH-hhccC-CEEEEcchhcccccCCccEEEECCCCCC
Confidence 37999999999999977542 211 23333333 3333333 22211 11112223222 358999887765553
Q ss_pred ccc--CCC---CCChhh-HHhhhhhcccCCceEEE
Q 039518 542 YKN--RGE---VCSLED-IMLEMDLIIRPQGFIII 570 (617)
Q Consensus 542 ~~~--~~~---~c~~~~-~l~e~dRilRP~G~~i~ 570 (617)
... ... ...+.. ++-..-|+||||++ |+
T Consensus 127 ~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 127 IKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred ccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 211 012 223344 55555679999987 55
No 441
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=72.97 E-value=15 Score=39.34 Aligned_cols=96 Identities=14% Similarity=0.043 Sum_probs=57.4
Q ss_pred cCCCCeEEEECCCC-cHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCC-----C-CCCCCeeEEE
Q 039518 226 SAGVFQVLDVGCGV-ASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQL-----P-YPSSSFEMVH 297 (617)
Q Consensus 226 ~~~g~rVLDIGCGt-G~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~L-----p-f~d~sFDlV~ 297 (617)
+.++.+||=.|+|. |..+..+++. |.. .+..+|.++...+.+++.|....+...+ .+. . .....+|+|+
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~--~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~-~~~~~~i~~~~~~~g~d~vi 250 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGAS--KIIAVDIDDRKLEWAREFGATHTVNSSG-TDPVEAIRALTGGFGADVVI 250 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC--eEEEEcCCHHHHHHHHHcCCceEEcCCC-cCHHHHHHHHhCCCCCCEEE
Confidence 45678899998742 3444444443 443 2455677888888888777532221111 111 0 1223589987
Q ss_pred ecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 298 CSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 298 ~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
-. .- . ...+.+..+.|++||.+++.+.
T Consensus 251 d~--~g----~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 251 DA--VG----R-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred EC--CC----C-HHHHHHHHHHhccCCEEEEECC
Confidence 42 11 1 2467788899999999998763
No 442
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=72.92 E-value=9.9 Score=40.49 Aligned_cols=93 Identities=11% Similarity=0.085 Sum_probs=54.3
Q ss_pred cCCCCeEEEECCC-CcHHHHHhccC--CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 226 SAGVFQVLDVGCG-VASFSAFLLPL--DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 226 ~~~g~rVLDIGCG-tG~~a~~La~~--gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
..++.+||=+||| .|.++..++++ +.. .+..+|.++..++.+++.+. .... ..+. .+..+|+|+-. .
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~--~vi~~~~~~~k~~~a~~~~~--~~~~---~~~~-~~~g~d~viD~--~ 230 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPES--KLVVFGKHQEKLDLFSFADE--TYLI---DDIP-EDLAVDHAFEC--V 230 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCC--cEEEEeCcHhHHHHHhhcCc--eeeh---hhhh-hccCCcEEEEC--C
Confidence 3567889999975 33444444442 221 34455777777777765332 1111 1111 11248988843 1
Q ss_pred cccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 303 VDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 303 ~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
-. ......+.+..++|++||.+++..
T Consensus 231 G~--~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 231 GG--RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred CC--CccHHHHHHHHHhCcCCcEEEEEe
Confidence 11 012357888999999999999876
No 443
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=72.73 E-value=21 Score=37.37 Aligned_cols=94 Identities=13% Similarity=0.163 Sum_probs=58.4
Q ss_pred cCCCCeEEEECC--CCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCC-----CCCCCCeeEEE
Q 039518 226 SAGVFQVLDVGC--GVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQL-----PYPSSSFEMVH 297 (617)
Q Consensus 226 ~~~g~rVLDIGC--GtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~L-----pf~d~sFDlV~ 297 (617)
+.+|.+||=.|+ |.|..+..+++. |.. +...+.++...+.+++.|....+...+...+ ....+.+|+|+
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~---Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~ 212 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCK---VVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYF 212 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCCE---EEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEE
Confidence 456788998884 567777777765 553 3444667777788877775332221111111 01224699998
Q ss_pred ecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 298 CSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 298 ~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
-.. ....+.++.++|++||.++..+
T Consensus 213 d~~--------G~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 213 DNV--------GGEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred ECC--------CHHHHHHHHHHhCcCcEEEEec
Confidence 431 1235688899999999999765
No 444
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=72.71 E-value=1.8 Score=43.44 Aligned_cols=131 Identities=15% Similarity=0.191 Sum_probs=72.0
Q ss_pred CeeeEEeccccccchhhhcc-----CCCeEEEEeccCCCCchhHHHHhhccc---ccc-cccCCCCCC----C-CCccch
Q 039518 467 EIRNAMDMNAYCGGFAVALN-----SLPVWVMNIVPISMKNTLSAIYNRGIL---GAF-HDWCEPFST----Y-PRTYDL 532 (617)
Q Consensus 467 ~~Rn~mDm~~~~g~faa~l~-----~~~v~vmnv~p~~~~~~l~~~~~RGli---g~~-~~~~~~f~t----y-prtyDl 532 (617)
+-++||.+|+++|==+.+|. +-.|+++-+-|....-.-..+-.-|+- -+. .|..+.+++ . +.+||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 46899999999885444442 234566555443322222233334542 121 233333332 2 368999
Q ss_pred hhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC-------------h---HHHHHHHhhhhcCCceEEEeec
Q 039518 533 LHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE-------------K---SLITRIRDLAPKFLWDVELHSL 596 (617)
Q Consensus 533 ~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~-------------~---~~~~~~~~~~~~~~W~~~~~~~ 596 (617)
|=.+.-=+.| ..++-..=+.|||||.+|+-+. . .+-+-.+.|.+.=+.++.+...
T Consensus 125 VFiDa~K~~y---------~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpi 195 (205)
T PF01596_consen 125 VFIDADKRNY---------LEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPI 195 (205)
T ss_dssp EEEESTGGGH---------HHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECS
T ss_pred EEEcccccch---------hhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEe
Confidence 8755433333 3445455589999999998621 1 2233344455666777777753
Q ss_pred cccCCCceeEEEEEec
Q 039518 597 ENREKKMESVLICRKK 612 (617)
Q Consensus 597 e~~~~~~~~~l~~~k~ 612 (617)
.+.|+|++|+
T Consensus 196 ------gdGl~l~~K~ 205 (205)
T PF01596_consen 196 ------GDGLTLARKR 205 (205)
T ss_dssp ------TTEEEEEEE-
T ss_pred ------CCeeEEEEEC
Confidence 3678999885
No 445
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=72.68 E-value=16 Score=38.23 Aligned_cols=94 Identities=17% Similarity=0.183 Sum_probs=55.2
Q ss_pred CCCeEEEECCCC-cHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEec--CCCCCCCCCCeeEEEeccccc
Q 039518 228 GVFQVLDVGCGV-ASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALS--TKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 228 ~g~rVLDIGCGt-G~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d--~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
++.+||-.|+|. |..+..+++. |+. .+..++.++...+.+++.+....+...+ ...+....+.||+|+...
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~--~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~--- 239 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAA--EIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEAS--- 239 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCc--EEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECC---
Confidence 567788888764 4555555543 542 2445566777777776666432111100 111221223489998532
Q ss_pred ccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 304 DWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 304 h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.....+.++.+.|+++|.++..+
T Consensus 240 ----g~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 240 ----GAPAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred ----CCHHHHHHHHHHHhcCCEEEEEe
Confidence 11346888999999999998765
No 446
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=72.58 E-value=15 Score=36.42 Aligned_cols=92 Identities=22% Similarity=0.195 Sum_probs=57.3
Q ss_pred CCCCeEEEECCCC-cHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC-------CCCCCeeEEE
Q 039518 227 AGVFQVLDVGCGV-ASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP-------YPSSSFEMVH 297 (617)
Q Consensus 227 ~~g~rVLDIGCGt-G~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp-------f~d~sFDlV~ 297 (617)
.++.+||.+|+|. |..+..+++. +. .+...+.++...+.+++.+....+ +..... ...+.+|+|+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~---~v~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~d~vi 206 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGA---RVIVTDRSDEKLELAKELGADHVI---DYKEEDLEEELRLTGGGGADVVI 206 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC---eEEEEcCCHHHHHHHHHhCCceec---cCCcCCHHHHHHHhcCCCCCEEE
Confidence 4677899999985 6555555554 43 445556777777777766532211 111111 1235699998
Q ss_pred ecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 298 CSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 298 ~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.... ....+..+.+.|+++|.++....
T Consensus 207 ~~~~-------~~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 207 DAVG-------GPETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred ECCC-------CHHHHHHHHHhcccCCEEEEEcc
Confidence 5421 11467778899999999998764
No 447
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=71.80 E-value=26 Score=36.54 Aligned_cols=99 Identities=15% Similarity=0.290 Sum_probs=62.1
Q ss_pred CCeEEEECCCCcHHHHHhcc----CCCcEEEeeecCCcHHHHHHHHHh------CCCcEEEEecC----CCCCCCCCCee
Q 039518 229 VFQVLDVGCGVASFSAFLLP----LDIQTMSFAPKDGHENQIQFALER------GIGAMISALST----KQLPYPSSSFE 294 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~----~gv~~v~v~~iDis~~~lq~A~er------g~~~~~~~~d~----~~Lpf~d~sFD 294 (617)
+...+|+|+|+..=+..|.+ ++. ...+.|+|+++..++...+. ++++.-..++. ..+| ...=-
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~-~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--~~~~R 155 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGS-LLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--RGGRR 155 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCC-cceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--CCCeE
Confidence 45699999999977766654 343 34788999999887644332 44444444442 2233 22222
Q ss_pred EE-Eeccccccccc-chHHHHHHHHHhccCCeEEEEEe
Q 039518 295 MV-HCSRCRVDWHA-NDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 295 lV-~~s~~l~h~~~-d~~~~L~el~RvLrPGG~Liis~ 330 (617)
++ +....+-++.+ +-..+|..+...|+||-++++.+
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 22 22223444543 34568999999999999999976
No 448
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=71.71 E-value=5.9 Score=44.83 Aligned_cols=106 Identities=19% Similarity=0.161 Sum_probs=55.9
Q ss_pred CCCCCeeeEEeccccccchhhhc----cCCCeEEEEeccCCCC-chhHHHHhh-cccc--cc-cccCCCCCCCCCccchh
Q 039518 463 VNETEIRNAMDMNAYCGGFAVAL----NSLPVWVMNIVPISMK-NTLSAIYNR-GILG--AF-HDWCEPFSTYPRTYDLL 533 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l----~~~~v~vmnv~p~~~~-~~l~~~~~R-Glig--~~-~~~~~~f~typrtyDl~ 533 (617)
...|. .||||.|+-||=..+| .+...+|-| =....- ..|.--++| |+-- +. .|=...-..+|..||.|
T Consensus 111 ~~pg~--~VLD~CAAPGgKTt~la~~l~~~g~lvA~-D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~I 187 (470)
T PRK11933 111 DNAPQ--RVLDMAAAPGSKTTQIAALMNNQGAIVAN-EYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAI 187 (470)
T ss_pred CCCCC--EEEEeCCCccHHHHHHHHHcCCCCEEEEE-eCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeE
Confidence 45554 6999999999965544 334433322 221122 455555566 4311 11 11111112356789998
Q ss_pred h----ccccccccccC--CCCCCh----------hhHHhhhhhcccCCceEEEe
Q 039518 534 H----ANHLFSHYKNR--GEVCSL----------EDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 534 H----~~~~~s~~~~~--~~~c~~----------~~~l~e~dRilRP~G~~i~~ 571 (617)
- |+|.-..-+.. ..+-.. ..||-..-+.|||||.+|.+
T Consensus 188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 8 44332211100 000111 27788888999999999998
No 449
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=71.69 E-value=4.6 Score=36.21 Aligned_cols=84 Identities=21% Similarity=0.243 Sum_probs=56.1
Q ss_pred CCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCC-----C-CCCCCeeEEEecccccccccchHH
Q 039518 238 GVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQL-----P-YPSSSFEMVHCSRCRVDWHANDGI 311 (617)
Q Consensus 238 GtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~L-----p-f~d~sFDlV~~s~~l~h~~~d~~~ 311 (617)
|.|.++..+++... ..+..+|.++...+.+++.|....+...+ .++ . ...+.+|+|+-.- .-..
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~-~~~~~~i~~~~~~~~~d~vid~~-------g~~~ 70 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKELGADHVIDYSD-DDFVEQIRELTGGRGVDVVIDCV-------GSGD 70 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTESEEEETTT-SSHHHHHHHHTTTSSEEEEEESS-------SSHH
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhhcccccccccc-cccccccccccccccceEEEEec-------CcHH
Confidence 45777777776522 25667788999999999988433222111 111 1 2335799998331 1256
Q ss_pred HHHHHHHhccCCeEEEEEeC
Q 039518 312 LLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 312 ~L~el~RvLrPGG~Liis~p 331 (617)
.+.+...+|++||.+++..-
T Consensus 71 ~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp HHHHHHHHEEEEEEEEEESS
T ss_pred HHHHHHHHhccCCEEEEEEc
Confidence 89999999999999999864
No 450
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=70.31 E-value=17 Score=38.21 Aligned_cols=87 Identities=20% Similarity=0.157 Sum_probs=52.5
Q ss_pred CCCeEEEECCC-CcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEeccccccc
Q 039518 228 GVFQVLDVGCG-VASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDW 305 (617)
Q Consensus 228 ~g~rVLDIGCG-tG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~ 305 (617)
++.+||=+||| .|.++..+++. |... +...|.++..++.|.+... .+.... ....||+|+-.-
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~--v~~~~~~~~rl~~a~~~~~------i~~~~~--~~~g~Dvvid~~----- 208 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSP--PAVWETNPRRRDGATGYEV------LDPEKD--PRRDYRAIYDAS----- 208 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCce--EEEeCCCHHHHHhhhhccc------cChhhc--cCCCCCEEEECC-----
Confidence 35568888865 45566666553 6543 3334777777666654321 111111 234589988431
Q ss_pred ccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 306 HANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 306 ~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
-....+..+.++|++||.+++.+.
T Consensus 209 --G~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 209 --GDPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred --CCHHHHHHHHHhhhcCcEEEEEee
Confidence 123467888999999999998763
No 451
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.21 E-value=24 Score=37.63 Aligned_cols=124 Identities=10% Similarity=0.117 Sum_probs=71.2
Q ss_pred EEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCC-CCCeeEEEeccccccc-----
Q 039518 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYP-SSSFEMVHCSRCRVDW----- 305 (617)
Q Consensus 232 VLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~-d~sFDlV~~s~~l~h~----- 305 (617)
|+|+=||.|.+..-|.+.|..+ +.++|+++.+++.-+.+... .+...|+.++... -..+|+++.+.---.+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~--~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~ 77 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKC--VFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGK 77 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeE--EEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccchhcc
Confidence 5899999999999998888653 55679998888776665433 3445566555321 1248999764110011
Q ss_pred ---ccc-hHHHHHHHHHhc---cCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 306 ---HAN-DGILLKEVDRVL---RPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 306 ---~~d-~~~~L~el~RvL---rPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
.++ ...++.++.|++ +|. ++++...+ ..........+..+...++.+|+.+..
T Consensus 78 ~~~~~d~r~~L~~~~~r~i~~~~P~-~~v~ENV~-~l~~~~~~~~~~~i~~~l~~~GY~v~~ 137 (315)
T TIGR00675 78 RKGFEDTRGTLFFEIVRILKEKKPK-FFLLENVK-GLVSHDKGRTFKVIIETLEELGYKVYY 137 (315)
T ss_pred cCCCCCchhhHHHHHHHHHhhcCCC-EEEeeccH-HHHhcccchHHHHHHHHHHhCCCEEEE
Confidence 112 234555555554 775 33332211 111112233466777778889987654
No 452
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=70.15 E-value=23 Score=37.44 Aligned_cols=122 Identities=19% Similarity=0.190 Sum_probs=71.1
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHH----HHHhCCC-cEEEEecCCCCCCC---CCCeeEEEec
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQF----ALERGIG-AMISALSTKQLPYP---SSSFEMVHCS 299 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~----A~erg~~-~~~~~~d~~~Lpf~---d~sFDlV~~s 299 (617)
.|++|+-+| -.-.++..++-.+. .-.+.-+|+++..+++ |.+.|.+ +...+.|..+ |+| .+.||+.+.-
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~m-pk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~-plpe~~~~kFDvfiTD 228 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGM-PKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRN-PLPEDLKRKFDVFITD 228 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCC-CceEEEEechHHHHHHHHHHHHHhCccchhheeehhcc-cChHHHHhhCCeeecC
Confidence 345699998 44444444432221 1255567889988865 4455765 6666666532 444 3689998742
Q ss_pred ccccccccchHHHHHHHHHhccCC---eEEEEEeCCCCCCCCCChhhHHHHHH-HHHHcCceEEE
Q 039518 300 RCRVDWHANDGILLKEVDRVLRPN---GYFVYSAPPAYRKDKDYPLIWDKLVN-LTTAMCWKLIA 360 (617)
Q Consensus 300 ~~l~h~~~d~~~~L~el~RvLrPG---G~Liis~p~~~~~~~~~~~~W~~le~-La~~~gw~~v~ 360 (617)
- -..+ .....++..=...|+-- ||+-++.. +.+- ..|.++++ +...+|+-+-.
T Consensus 229 P-peTi-~alk~FlgRGI~tLkg~~~aGyfgiT~r----essi--dkW~eiQr~lIn~~gvVITd 285 (354)
T COG1568 229 P-PETI-KALKLFLGRGIATLKGEGCAGYFGITRR----ESSI--DKWREIQRILINEMGVVITD 285 (354)
T ss_pred c-hhhH-HHHHHHHhccHHHhcCCCccceEeeeec----cccH--HHHHHHHHHHHHhcCeeeHh
Confidence 1 1111 12233455545556554 89999753 2222 33999999 88899986544
No 453
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=69.85 E-value=7.2 Score=43.42 Aligned_cols=61 Identities=20% Similarity=0.279 Sum_probs=40.8
Q ss_pred HHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHH
Q 039518 208 EYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALE 271 (617)
Q Consensus 208 ~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~e 271 (617)
+|..-|...+......+ ..+..-|||||.|||.++.+.+..|.. .+++++.-..|...|++
T Consensus 47 ky~~gi~~tIte~kh~~-~~gkv~vLdigtGTGLLSmMAvragaD--~vtA~EvfkPM~d~ark 107 (636)
T KOG1501|consen 47 KYRLGIEKTITEPKHVL-DIGKVFVLDIGTGTGLLSMMAVRAGAD--SVTACEVFKPMVDLARK 107 (636)
T ss_pred HHHHHHHHHhcccceec-cCceEEEEEccCCccHHHHHHHHhcCC--eEEeehhhchHHHHHHH
Confidence 45555555553322211 112234999999999999888887755 57888888888888775
No 454
>KOG2730 consensus Methylase [General function prediction only]
Probab=69.56 E-value=7.3 Score=39.83 Aligned_cols=87 Identities=17% Similarity=0.198 Sum_probs=56.7
Q ss_pred EEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecCCC----CCCCCCCeeEEEeccc
Q 039518 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMISALSTKQ----LPYPSSSFEMVHCSRC 301 (617)
Q Consensus 232 VLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~~~----Lpf~d~sFDlV~~s~~ 301 (617)
|+|.-||.|..+..++.++..++ ++|+++.-+..|+.+ |++ +.+.++|..+ +.+...-+|+|..+
T Consensus 98 iidaf~g~gGntiqfa~~~~~Vi---sIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s-- 172 (263)
T KOG2730|consen 98 IVDAFCGVGGNTIQFALQGPYVI---AIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS-- 172 (263)
T ss_pred hhhhhhcCCchHHHHHHhCCeEE---EEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC--
Confidence 99999999999999988887554 458888888888776 554 6778887533 33444446677654
Q ss_pred ccccc--cchHHHHHHHHHhccCCe
Q 039518 302 RVDWH--ANDGILLKEVDRVLRPNG 324 (617)
Q Consensus 302 l~h~~--~d~~~~L~el~RvLrPGG 324 (617)
-.|. .-...-+..+...+.|.|
T Consensus 173 -ppwggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 173 -PPWGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred -CCCCCcchhhhhhhhhhhhcchhH
Confidence 2443 122334445555555554
No 455
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=69.51 E-value=15 Score=39.55 Aligned_cols=96 Identities=17% Similarity=0.088 Sum_probs=57.6
Q ss_pred ccCCCCeEEEECCC-CcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCC-----CCCCCCeeEEE
Q 039518 225 RSAGVFQVLDVGCG-VASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQL-----PYPSSSFEMVH 297 (617)
Q Consensus 225 r~~~g~rVLDIGCG-tG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~L-----pf~d~sFDlV~ 297 (617)
.+.++.+||=.|+| .|.++..+++. |.. .+..+|.++...+.+++.|....+...+ +++ ....+.+|+|+
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~--~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~-~~~~~~i~~~~~~g~d~vi 264 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGAS--QVVAVDLNEDKLALARELGATATVNAGD-PNAVEQVRELTGGGVDYAF 264 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCC--cEEEEcCCHHHHHHHHHcCCceEeCCCc-hhHHHHHHHHhCCCCCEEE
Confidence 34567788889875 23444445443 542 2445678888888888877643222111 111 01123589998
Q ss_pred ecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 298 CSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 298 ~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
-.- .....+....+.|++||.+++..
T Consensus 265 d~~-------G~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 265 EMA-------GSVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred ECC-------CChHHHHHHHHHHhcCCEEEEEc
Confidence 431 11246788889999999998865
No 456
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.15 E-value=1.5 Score=42.34 Aligned_cols=47 Identities=21% Similarity=0.281 Sum_probs=35.9
Q ss_pred cCCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 519 WCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 519 ~~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
|-.+|. |++-|+|-|.|+..+.+-. .-..-+-|--|+|||||++-+.
T Consensus 39 ~e~~F~--dns~d~iyaeHvlEHlt~~----Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 39 NESMFE--DNSVDAIYAEHVLEHLTYD----EGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred hhccCC--CcchHHHHHHHHHHHHhHH----HHHHHHHHHHHHhCcCcEEEEE
Confidence 444566 5999999999999876311 1236788999999999999875
No 457
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=68.66 E-value=8.4 Score=37.67 Aligned_cols=53 Identities=23% Similarity=0.160 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcC-ceEEEEeeeeEEEeecc
Q 039518 309 DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMC-WKLIARKIQTAIWIKEE 372 (617)
Q Consensus 309 ~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~g-w~~v~~~~~~~IwqKp~ 372 (617)
....+.++.|+|||||.+++......... .....+.+..| |... +..+|.|+.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~~~~~~-------~~~~~~~~~~g~~~~~----~~iiW~K~~ 88 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDDREIAG-------FLFELALEIFGGFFLR----NEIIWNKPN 88 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-CCEECT-------HHHHHHHHHHTT-EEE----EEEEEE-SS
T ss_pred HHHHHHHHHhhcCCCeeEEEEecchhhhH-------HHHHHHHHHhhhhhee----ccceeEecC
Confidence 46789999999999999999764322111 12445556667 7655 478899983
No 458
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=67.84 E-value=23 Score=37.23 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=56.3
Q ss_pred cCCCCeEEEECCC-CcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecC--CCC-CC-CCCCeeEEEec
Q 039518 226 SAGVFQVLDVGCG-VASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALST--KQL-PY-PSSSFEMVHCS 299 (617)
Q Consensus 226 ~~~g~rVLDIGCG-tG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~--~~L-pf-~d~sFDlV~~s 299 (617)
+.++.+||=+|+| .|.++..+++. |.. .+..++.+++..+.+++.|....+...+. +.+ .. ....||+|+-.
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~--~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~ 238 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAE--DVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIEC 238 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC--EEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEEC
Confidence 4567889888864 22333344433 544 24456778888888887775322211110 001 01 23369999843
Q ss_pred ccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 300 RCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 300 ~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
. .....+.+..+.|+++|.+++...
T Consensus 239 ~-------g~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 239 S-------GNTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred C-------CCHHHHHHHHHHhhcCCEEEEEcC
Confidence 1 123456778899999999998653
No 459
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=67.82 E-value=13 Score=38.12 Aligned_cols=124 Identities=20% Similarity=0.236 Sum_probs=81.9
Q ss_pred Hhcc-CCCCCeeeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhhcc-----cccccccCCCCCCCCCcc
Q 039518 459 QLMN-VNETEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNRGI-----LGAFHDWCEPFSTYPRTY 530 (617)
Q Consensus 459 ~~~~-~~~~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~RGl-----ig~~~~~~~~f~typrty 530 (617)
+++. +.....|+|.|.|||.|---+.|..+ |.=+ |.=.|+. +-|.-+.+|+. .|=+++||-.= ..
T Consensus 21 dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~--i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~-----~~ 93 (257)
T COG4106 21 DLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAV--ITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQ-----PT 93 (257)
T ss_pred HHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCe--EeeccCCHHHHHHHHHhCCCCceecccHhhcCCCC-----cc
Confidence 4444 67788999999999999877777543 3222 2234555 67777888883 68889999654 45
Q ss_pred chhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe--cChH--HHHHHHhhhhcCCceEEEee
Q 039518 531 DLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR--DEKS--LITRIRDLAPKFLWDVELHS 595 (617)
Q Consensus 531 Dl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~--d~~~--~~~~~~~~~~~~~W~~~~~~ 595 (617)
|||-|+-+|.-. ..+. .+|--.=--|+|||.+-++ |+.+ .-.-|++.|+..-|...+.+
T Consensus 94 dllfaNAvlqWl--pdH~----~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~ 156 (257)
T COG4106 94 DLLFANAVLQWL--PDHP----ELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGG 156 (257)
T ss_pred chhhhhhhhhhc--cccH----HHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCc
Confidence 999999888622 1222 2333333358999999997 3321 23457778877777765543
No 460
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=67.69 E-value=19 Score=37.10 Aligned_cols=94 Identities=16% Similarity=0.100 Sum_probs=56.0
Q ss_pred CCCCeEEEECCC-CcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecC----CCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCG-VASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALST----KQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCG-tG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~----~~Lpf~d~sFDlV~~s~ 300 (617)
.++.+||=+|+| .|..+..+++. |.. .+..+|.++...+.+++.|....+...+. ..+ .....+|+|+-.-
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~--~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~-~~~~g~d~vid~~ 195 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAA--RVVAADPSPDRRELALSFGATALAEPEVLAERQGGL-QNGRGVDVALEFS 195 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC--EEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHH-hCCCCCCEEEECC
Confidence 367789999875 23344444443 543 23445778888888888776332211110 001 1223589887431
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
-....+.++.+.|+|+|.+++..
T Consensus 196 -------G~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 196 -------GATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred -------CChHHHHHHHHHhcCCCEEEEec
Confidence 12346888899999999999876
No 461
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=66.47 E-value=28 Score=35.20 Aligned_cols=96 Identities=18% Similarity=0.100 Sum_probs=56.4
Q ss_pred ccCCCCeEEEECCCC-cHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 225 RSAGVFQVLDVGCGV-ASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 225 r~~~g~rVLDIGCGt-G~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
++.++.+||-.|+|. |..+..+++. +.. .+..++.+++..+.+++.|....+.. ...-....+.+|+|+...
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~--~vi~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~d~vl~~~-- 167 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAAGAR--EVVGVDPDAARRELAEALGPADPVAA--DTADEIGGRGADVVIEAS-- 167 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCC--cEEEECCCHHHHHHHHHcCCCccccc--cchhhhcCCCCCEEEEcc--
Confidence 345677888888753 4444444443 544 14555777777788887762111111 111011334689998431
Q ss_pred cccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 303 VDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 303 ~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.....+.+..+.|+++|.++..+.
T Consensus 168 -----~~~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 168 -----GSPSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred -----CChHHHHHHHHHhcCCcEEEEEec
Confidence 113467888999999999987653
No 462
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=65.85 E-value=29 Score=36.07 Aligned_cols=124 Identities=9% Similarity=0.110 Sum_probs=75.3
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC---CCCCCeeEEEeccccccc--
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP---YPSSSFEMVHCSRCRVDW-- 305 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp---f~d~sFDlV~~s~~l~h~-- 305 (617)
+++|+=||.|.+..-|.+.|.. -+.++|+++.+.+.-+.+.. .....|+..+. ++. .+|+++.+.---.+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~--~~~a~e~~~~a~~~y~~N~~--~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ 76 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFE--VVWAVEIDPDACETYKANFP--EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSI 76 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEE--EEEEEESSHHHHHHHHHHHT--EEEESHGGGCHHHHHHH-T-SEEEEE---TTTST
T ss_pred cEEEEccCccHHHHHHHhcCcE--EEEEeecCHHHHHhhhhccc--ccccccccccccccccc-cceEEEeccCCceEec
Confidence 5999999999999999888855 45678999998777666544 66777776664 343 59999865211111
Q ss_pred ------ccch----HHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 306 ------HAND----GILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 306 ------~~d~----~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
..|. -..+.++.+.++|.-.++=-++. .........+..+...++++|+.+...
T Consensus 77 ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~--l~~~~~~~~~~~i~~~l~~lGY~v~~~ 140 (335)
T PF00145_consen 77 AGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPG--LLSSKNGEVFKEILEELEELGYNVQWR 140 (335)
T ss_dssp TSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGG--GGTGGGHHHHHHHHHHHHHTTEEEEEE
T ss_pred cccccccccccchhhHHHHHHHhhccceEEEecccce--eeccccccccccccccccccceeehhc
Confidence 1122 12344455567885443333332 222233345777888889999876643
No 463
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=65.51 E-value=30 Score=36.98 Aligned_cols=95 Identities=12% Similarity=0.116 Sum_probs=58.8
Q ss_pred cCCCCeEEEECC--CCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHH-HhCCCcEEEEecCCCC-----CCCCCCeeEE
Q 039518 226 SAGVFQVLDVGC--GVASFSAFLLPL-DIQTMSFAPKDGHENQIQFAL-ERGIGAMISALSTKQL-----PYPSSSFEMV 296 (617)
Q Consensus 226 ~~~g~rVLDIGC--GtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~-erg~~~~~~~~d~~~L-----pf~d~sFDlV 296 (617)
+.+|.+||=.|+ |.|.++..+++. |.. +..++.++...+.++ +.|....+...+...+ ....+.+|+|
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~---Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v 232 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCY---VVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIY 232 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCE---EEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEE
Confidence 467888999997 477777777765 543 444566777777776 5565332221100011 0112358999
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+-.- ....+.++.+.|++||.+++.+.
T Consensus 233 ~d~v--------G~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 233 FDNV--------GGDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred EECC--------CHHHHHHHHHHhccCCEEEEECc
Confidence 8431 12477889999999999998653
No 464
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=65.44 E-value=21 Score=40.22 Aligned_cols=100 Identities=13% Similarity=0.227 Sum_probs=59.4
Q ss_pred eEEEECCCCc--HHHHHhccCCCcEEEeeecCCcHHHHHHHHHh--C-C---CcEEE--EecCCCCCCC-CCCeeEEEec
Q 039518 231 QVLDVGCGVA--SFSAFLLPLDIQTMSFAPKDGHENQIQFALER--G-I---GAMIS--ALSTKQLPYP-SSSFEMVHCS 299 (617)
Q Consensus 231 rVLDIGCGtG--~~a~~La~~gv~~v~v~~iDis~~~lq~A~er--g-~---~~~~~--~~d~~~Lpf~-d~sFDlV~~s 299 (617)
.++|+|.|.| .+++.++-++ +.-.++.+|.+.+|..+.... + . ...+. +.--..+|.. .+.||+|+|+
T Consensus 203 ~~~dfgsg~~~~~~a~~~lwr~-t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~a 281 (491)
T KOG2539|consen 203 LLRDFGSGAGNGGWAAVLLWRQ-TKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVICA 281 (491)
T ss_pred HHHHHHhhcccchhhhhhhccc-ccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEee
Confidence 4788887765 4555444443 122566678898888776543 1 1 01111 1112455654 3459999999
Q ss_pred ccccccccc--hHHHHHHHH-HhccCCeEEEEEeC
Q 039518 300 RCRVDWHAN--DGILLKEVD-RVLRPNGYFVYSAP 331 (617)
Q Consensus 300 ~~l~h~~~d--~~~~L~el~-RvLrPGG~Liis~p 331 (617)
+.+++.... .....+++. +..++||++++..+
T Consensus 282 h~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 282 HKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred eeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 988887632 233444444 45788999999764
No 465
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=64.99 E-value=26 Score=35.88 Aligned_cols=134 Identities=17% Similarity=0.260 Sum_probs=85.2
Q ss_pred CCCCCeeeEEeccccccchhhhcc-----CCCeEEEEeccCCCCchhHHHHhhc-ccccccccCCCCCCCCCccchh--h
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALN-----SLPVWVMNIVPISMKNTLSAIYNRG-ILGAFHDWCEPFSTYPRTYDLL--H 534 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~-----~~~v~vmnv~p~~~~~~l~~~~~RG-lig~~~~~~~~f~typrtyDl~--H 534 (617)
|..| -.||-.||..|.....+. +-.|..+-+.|....+-+.++-.|= +|.++.|=+ +|-.|-++ .
T Consensus 71 ik~g--skVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr-----~P~~Y~~lv~~ 143 (229)
T PF01269_consen 71 IKPG--SKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDAR-----HPEKYRMLVEM 143 (229)
T ss_dssp --TT---EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TT-----SGGGGTTTS--
T ss_pred CCCC--CEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCC-----ChHHhhccccc
Confidence 5555 579999999999988884 3467899999988888888888887 889997743 56555443 3
Q ss_pred ccccccccccCCCCCChhhHHhhhhhcccCCceEEEe----------cChHHHHHHHhhhhcCCceE-EEeeccccCCCc
Q 039518 535 ANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR----------DEKSLITRIRDLAPKFLWDV-ELHSLENREKKM 603 (617)
Q Consensus 535 ~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~----------d~~~~~~~~~~~~~~~~W~~-~~~~~e~~~~~~ 603 (617)
.+-+|..- -.+=..+.+++=++.-|++||+++|. +..++..+..+.++.-..+. ...+.| |..+
T Consensus 144 VDvI~~DV---aQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~Le--Py~~ 218 (229)
T PF01269_consen 144 VDVIFQDV---AQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLE--PYER 218 (229)
T ss_dssp EEEEEEE----SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-T--TTST
T ss_pred ccEEEecC---CChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccC--CCCC
Confidence 34555532 33444567888899999999999986 33344444444444433443 233443 4444
Q ss_pred eeEEE
Q 039518 604 ESVLI 608 (617)
Q Consensus 604 ~~~l~ 608 (617)
+..+|
T Consensus 219 dH~~v 223 (229)
T PF01269_consen 219 DHAMV 223 (229)
T ss_dssp TEEEE
T ss_pred CcEEE
Confidence 55444
No 466
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=64.70 E-value=7.7 Score=42.26 Aligned_cols=78 Identities=13% Similarity=0.136 Sum_probs=48.7
Q ss_pred ccCcceecCCCCCcccCChhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccC----C---CcEEEeeecC
Q 039518 188 EKGQLWWFPGGGTHFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPL----D---IQTMSFAPKD 260 (617)
Q Consensus 188 ~e~d~~~Fpgggt~F~~~a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~----g---v~~v~v~~iD 260 (617)
..||.++-|.-+..|......+. .+++..... .+.-.++|+|.|+|.++..+++. . ....++.-++
T Consensus 44 ~~GDFiTApels~lFGella~~~---~~~wq~~g~----p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE 116 (370)
T COG1565 44 RKGDFITAPELSQLFGELLAEQF---LQLWQELGR----PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIE 116 (370)
T ss_pred ccCCeeechhHHHHHHHHHHHHH---HHHHHHhcC----CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEe
Confidence 34677776766666644433332 222222111 12235999999999999888754 1 2456788889
Q ss_pred CcHHHHHHHHHh
Q 039518 261 GHENQIQFALER 272 (617)
Q Consensus 261 is~~~lq~A~er 272 (617)
+|+...+.-++.
T Consensus 117 ~s~~L~~~Qk~~ 128 (370)
T COG1565 117 PSPELRARQKET 128 (370)
T ss_pred cCHHHHHHHHHH
Confidence 999987766665
No 467
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=64.14 E-value=14 Score=42.36 Aligned_cols=96 Identities=14% Similarity=0.121 Sum_probs=61.0
Q ss_pred CCCCeEEEECCCCc-HHHHHhcc-CCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCC-------------------
Q 039518 227 AGVFQVLDVGCGVA-SFSAFLLP-LDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQ------------------- 285 (617)
Q Consensus 227 ~~g~rVLDIGCGtG-~~a~~La~-~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~------------------- 285 (617)
.++.+||=+|+|.- ..+..++. .|. .+...|.+.+.++.+++.|.. +...+..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA---~V~v~d~~~~rle~a~~lGa~--~v~v~~~e~g~~~~gYa~~~s~~~~~~ 236 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA---IVRAFDTRPEVKEQVQSMGAE--FLELDFKEEGGSGDGYAKVMSEEFIAA 236 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHcCCe--EEeccccccccccccceeecCHHHHHH
Confidence 35789999999966 44444443 354 355568888888888876543 22222110
Q ss_pred ----CCCCCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEE
Q 039518 286 ----LPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVY 328 (617)
Q Consensus 286 ----Lpf~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Lii 328 (617)
++-.-..+|+|++. ++.+-...|....+++.+.+|||+.++=
T Consensus 237 ~~~~~~e~~~~~DIVI~T-alipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 237 EMELFAAQAKEVDIIITT-ALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHhCCCCEEEEC-cccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 11112469999866 3444444566688999999999999774
No 468
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=63.93 E-value=9.1 Score=39.53 Aligned_cols=165 Identities=16% Similarity=0.137 Sum_probs=89.2
Q ss_pred ccccccccCccccccchhhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCCCe-EEEEeccCCCCchhHHH--
Q 039518 431 ESLSRIGITQEEFTTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPV-WVMNIVPISMKNTLSAI-- 507 (617)
Q Consensus 431 ~~~~~~~~~~~~f~~d~~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v-~vmnv~p~~~~~~l~~~-- 507 (617)
|.+.+-|+.-- =..++.-|.+...+--. ++..+=-+|||.=.|+|=+|+.-+++.- .|.+| -+|. |-|+.+
T Consensus 102 PTiEIdGIrMh-rt~~tdP~~Dt~~Kv~~---V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~Vitv-Ekdp-~VLeLa~l 175 (287)
T COG2521 102 PTIEIDGIRMH-RTKGTDPLEDTLAKVEL---VKVKRGERVLDTCTGLGYTAIEALERGAIHVITV-EKDP-NVLELAKL 175 (287)
T ss_pred CeEEEccEEEe-cccCcCcHHHHHhhhhe---eccccCCEeeeeccCccHHHHHHHHcCCcEEEEE-eeCC-CeEEeecc
Confidence 55666665321 12445566665443211 3333346899999999999987665544 33322 1111 111111
Q ss_pred --Hhhccc----c-cccccCCCCCCCC-Cccch-hhccccccccccCCCCCC-hhhHHhhhhhcccCCceEEEe------
Q 039518 508 --YNRGIL----G-AFHDWCEPFSTYP-RTYDL-LHANHLFSHYKNRGEVCS-LEDIMLEMDLIIRPQGFIIIR------ 571 (617)
Q Consensus 508 --~~RGli----g-~~~~~~~~f~typ-rtyDl-~H~~~~~s~~~~~~~~c~-~~~~l~e~dRilRP~G~~i~~------ 571 (617)
+-|||. - +..|--|.-.+++ -+||. ||---=||+ ..-. -+.+--|+-|||||||-+.=-
T Consensus 176 NPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~-----AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ 250 (287)
T COG2521 176 NPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRFSL-----AGELYSEEFYRELYRILKRGGRLFHYVGNPGK 250 (287)
T ss_pred CCCCccccccccEEecccHHHHHhcCCccccceEeeCCCccch-----hhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc
Confidence 233331 1 2344445556667 56886 464444442 1100 135677999999999987642
Q ss_pred --cChHHHHHHHhhhhcCCceEEEeeccccCCCceeEEEEEec
Q 039518 572 --DEKSLITRIRDLAPKFLWDVELHSLENREKKMESVLICRKK 612 (617)
Q Consensus 572 --d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~k~ 612 (617)
--.++...|.+-+.+.-.++.-...|.+ -++++|+
T Consensus 251 ryrG~d~~~gVa~RLr~vGF~~v~~~~~~~------gv~A~k~ 287 (287)
T COG2521 251 RYRGLDLPKGVAERLRRVGFEVVKKVREAL------GVVAVKP 287 (287)
T ss_pred ccccCChhHHHHHHHHhcCceeeeeehhcc------ceEEecC
Confidence 1235666777777777777554443221 2667764
No 469
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=63.74 E-value=22 Score=38.19 Aligned_cols=98 Identities=17% Similarity=0.132 Sum_probs=61.4
Q ss_pred cccCCCCeEEEEC--CCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEE--EecC-CCC-C-CCCCCeeE
Q 039518 224 LRSAGVFQVLDVG--CGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMIS--ALST-KQL-P-YPSSSFEM 295 (617)
Q Consensus 224 lr~~~g~rVLDIG--CGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~--~~d~-~~L-p-f~d~sFDl 295 (617)
.+++++.+||=.| .|.|.++..|++. |..++.++ .+++..+.+++.|....+. ..|. +.+ . .....+|+
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~---~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDv 214 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVV---SSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDV 214 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEe---cCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceE
Confidence 4456688999999 4567888888876 44433332 3444445777777643332 1111 111 1 12346999
Q ss_pred EEecccccccccchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 296 VHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 296 V~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
|+.. --...+.+..+.|+++|.++.....
T Consensus 215 v~D~--------vG~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 215 VLDT--------VGGDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred EEEC--------CCHHHHHHHHHHhccCCEEEEEecC
Confidence 9854 2346778899999999999987653
No 470
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=63.69 E-value=6.7 Score=41.17 Aligned_cols=46 Identities=15% Similarity=0.372 Sum_probs=36.5
Q ss_pred ChhhHHhhhhhcccCCceEEE--------ecC-------h-HHHHHHHhhhhcCCceEEEee
Q 039518 550 SLEDIMLEMDLIIRPQGFIII--------RDE-------K-SLITRIRDLAPKFLWDVELHS 595 (617)
Q Consensus 550 ~~~~~l~e~dRilRP~G~~i~--------~d~-------~-~~~~~~~~~~~~~~W~~~~~~ 595 (617)
+|.++|-.|-++|+|||+||= .+. . =.+++|+.+++.+-|+....+
T Consensus 180 Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~ 241 (270)
T PF07942_consen 180 NIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEE 241 (270)
T ss_pred HHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 456899999999999998884 233 1 137899999999999987654
No 471
>PLN02740 Alcohol dehydrogenase-like
Probab=63.50 E-value=27 Score=37.84 Aligned_cols=97 Identities=14% Similarity=0.056 Sum_probs=56.3
Q ss_pred ccCCCCeEEEECCC-CcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCC-CC-----CCCCCCeeEE
Q 039518 225 RSAGVFQVLDVGCG-VASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTK-QL-----PYPSSSFEMV 296 (617)
Q Consensus 225 r~~~g~rVLDIGCG-tG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~-~L-----pf~d~sFDlV 296 (617)
.+.++.+||=+|+| .|..+..+++. |.. .+..+|.+++.++.+++.|....+...+.. .+ .+..+.||+|
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~--~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvv 272 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGAS--KIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYS 272 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCC--cEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEE
Confidence 34577889999874 23333334433 542 244567788888999887764332211100 01 0112269999
Q ss_pred EecccccccccchHHHHHHHHHhccCC-eEEEEEe
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPN-GYFVYSA 330 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPG-G~Liis~ 330 (617)
+-.- -....+.+..+.+++| |.+++.+
T Consensus 273 id~~-------G~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 273 FECA-------GNVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred EECC-------CChHHHHHHHHhhhcCCCEEEEEc
Confidence 8431 1224677888899997 9888765
No 472
>PRK10458 DNA cytosine methylase; Provisional
Probab=63.19 E-value=1.3e+02 Score=34.28 Aligned_cols=144 Identities=10% Similarity=0.150 Sum_probs=79.4
Q ss_pred HHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCCCCC
Q 039518 211 QRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---IGAMISALSTKQLP 287 (617)
Q Consensus 211 ~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~~Lp 287 (617)
..+.++++..... ......+++|+=||.|.+..-+...|..+ +..+|+++.+.+.-+.+. ........|+..+.
T Consensus 71 ~~~~~~~~~~~~~-~~~~~~~~iDLFsGiGGl~lGfe~aG~~~--v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~ 147 (467)
T PRK10458 71 AHLQTLLPKPPAH-HPHYAFRFIDLFAGIGGIRRGFEAIGGQC--VFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDIT 147 (467)
T ss_pred HHHHHhcccCccc-CcCCCceEEEeCcCccHHHHHHHHcCCEE--EEEEechHHHHHHHHHHcCCCCccceeccChhhCc
Confidence 4566666443221 22235679999999999999988778763 466788888877655542 12233334444432
Q ss_pred CC-----------------CCCeeEEEecccccc-----------------cc-cchHHHHHHHHHh---ccCCeEEEEE
Q 039518 288 YP-----------------SSSFEMVHCSRCRVD-----------------WH-ANDGILLKEVDRV---LRPNGYFVYS 329 (617)
Q Consensus 288 f~-----------------d~sFDlV~~s~~l~h-----------------~~-~d~~~~L~el~Rv---LrPGG~Liis 329 (617)
.. -..+|+++.+.---. +. +....++.++.|+ ++|. ++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk-~fvl- 225 (467)
T PRK10458 148 LSHKEGVSDEEAAEHIRQHIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRPA-IFVL- 225 (467)
T ss_pred cccccccchhhhhhhhhccCCCCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCCC-EEEE-
Confidence 10 124788875411000 11 1122355555554 4666 3333
Q ss_pred eCCCCCCCCCChhhHHHHHHHHHHcCceEE
Q 039518 330 APPAYRKDKDYPLIWDKLVNLTTAMCWKLI 359 (617)
Q Consensus 330 ~p~~~~~~~~~~~~W~~le~La~~~gw~~v 359 (617)
..-......+....+..+...++++|+.+.
T Consensus 226 ENV~gl~s~~~g~~f~~i~~~L~~lGY~v~ 255 (467)
T PRK10458 226 ENVKNLKSHDKGKTFRIIMQTLDELGYDVA 255 (467)
T ss_pred eCcHhhhcccccHHHHHHHHHHHHcCCeEE
Confidence 221122233444457777888889999875
No 473
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=63.18 E-value=34 Score=36.97 Aligned_cols=94 Identities=20% Similarity=0.178 Sum_probs=61.0
Q ss_pred CCeEEEECCCC-cHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCC-----CCCCC-CCeeEEEecc
Q 039518 229 VFQVLDVGCGV-ASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQ-----LPYPS-SSFEMVHCSR 300 (617)
Q Consensus 229 g~rVLDIGCGt-G~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~-----Lpf~d-~sFDlV~~s~ 300 (617)
+.+|+=+|||. |.++..+++. +.. .+..+|.++..++.|++.+....+.....+. +.... ..||+|+=.-
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~--~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGAS--VVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCc--eEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 34799999995 6666666554 433 5666799999999999854322111111100 01112 3699998432
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
- -..++..+.+++||||.+++..-
T Consensus 247 --G-----~~~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 247 --G-----SPPALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred --C-----CHHHHHHHHHHhcCCCEEEEEec
Confidence 1 23489999999999999999874
No 474
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=62.51 E-value=8.2 Score=39.26 Aligned_cols=103 Identities=17% Similarity=0.271 Sum_probs=52.3
Q ss_pred CCeeeEEeccccccchhhhccCCCe-EEEEeccCCCC-chhHHHH--hhcccccccccCCCCCC-C--CCccchhhcccc
Q 039518 466 TEIRNAMDMNAYCGGFAVALNSLPV-WVMNIVPISMK-NTLSAIY--NRGILGAFHDWCEPFST-Y--PRTYDLLHANHL 538 (617)
Q Consensus 466 ~~~Rn~mDm~~~~g~faa~l~~~~v-~vmnv~p~~~~-~~l~~~~--~RGlig~~~~~~~~f~t-y--prtyDl~H~~~~ 538 (617)
.....++|.|||.|=..-.|+-+-. .|==|-|...- ++.+--+ +.+-+|.+. |..+-. - +..||+|=+--+
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~--~~gLQ~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFY--CVGLQDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEE--ES-GGG----TT-EEEEEEES-
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEE--ecCHhhccCCCCcEeEEEehHh
Confidence 3578899999999998877765433 22223333322 3332222 223333332 222211 1 379999985444
Q ss_pred ccccccCCCCCChhhHHhhhhhcccCCceEEEecCh
Q 039518 539 FSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK 574 (617)
Q Consensus 539 ~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~ 574 (617)
..+. ..-.+..+|.--=.-|||+|.+|+.|+.
T Consensus 132 lghL----TD~dlv~fL~RCk~~L~~~G~IvvKEN~ 163 (218)
T PF05891_consen 132 LGHL----TDEDLVAFLKRCKQALKPNGVIVVKENV 163 (218)
T ss_dssp GGGS-----HHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hccC----CHHHHHHHHHHHHHhCcCCcEEEEEecC
Confidence 4332 1112335566666789999999998554
No 475
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=62.14 E-value=8.4 Score=39.59 Aligned_cols=111 Identities=18% Similarity=0.173 Sum_probs=61.8
Q ss_pred CeEEEECCCCcHHHHHhccCCCc-----EE---EeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC--------CCCCCe
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQ-----TM---SFAPKDGHENQIQFALERGIGAMISALSTKQLP--------YPSSSF 293 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~-----~v---~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp--------f~d~sF 293 (617)
.||.|+.+..|+|+..|.++-.. .. .|..+|+.+-+ - -..+.-.++|+.... |..+.-
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma----P--I~GV~qlq~DIT~~stae~Ii~hfggekA 116 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA----P--IEGVIQLQGDITSASTAEAIIEHFGGEKA 116 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC----c--cCceEEeecccCCHhHHHHHHHHhCCCCc
Confidence 45999999999999998765111 00 13334432211 0 001233444543322 444578
Q ss_pred eEEEecc-----cccccccc-----hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHH
Q 039518 294 EMVHCSR-----CRVDWHAN-----DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNL 350 (617)
Q Consensus 294 DlV~~s~-----~l~h~~~d-----~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~L 350 (617)
|+|+|-. .+|.+.+. ...+|.-...+|||||.|+-- .+...+....+..+..+
T Consensus 117 dlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK----ifRg~~tslLysql~~f 179 (294)
T KOG1099|consen 117 DLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK----IFRGRDTSLLYSQLRKF 179 (294)
T ss_pred cEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh----hhccCchHHHHHHHHHH
Confidence 9999852 12222111 123566778999999999863 44445555556666666
No 476
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=61.70 E-value=48 Score=36.31 Aligned_cols=102 Identities=15% Similarity=0.068 Sum_probs=58.1
Q ss_pred cCCCCeEEEECCC-CcHHHHHhcc-CCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC------CCCCCeeEEE
Q 039518 226 SAGVFQVLDVGCG-VASFSAFLLP-LDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP------YPSSSFEMVH 297 (617)
Q Consensus 226 ~~~g~rVLDIGCG-tG~~a~~La~-~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp------f~d~sFDlV~ 297 (617)
+.++.+||=.|+| .|..+..+++ .|... +...|.++..++.|++.|.. .+.......++ .....+|+|+
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~--vi~~d~~~~r~~~a~~~Ga~-~v~~~~~~~~~~~v~~~~~~~g~Dvvi 259 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAV--VIVGDLNPARLAQARSFGCE-TVDLSKDATLPEQIEQILGEPEVDCAV 259 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCce--EEEeCCCHHHHHHHHHcCCe-EEecCCcccHHHHHHHHcCCCCCcEEE
Confidence 4567778777764 2334344444 35543 23457778888899888764 22111001110 1224589998
Q ss_pred eccccccc--------ccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 298 CSRCRVDW--------HANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 298 ~s~~l~h~--------~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
-.- -... ..+....+.+..+++++||.+++.+.
T Consensus 260 d~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 260 DCV-GFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred ECC-CCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 432 1110 01223588999999999999999764
No 477
>PLN02827 Alcohol dehydrogenase-like
Probab=61.06 E-value=32 Score=37.31 Aligned_cols=96 Identities=13% Similarity=0.004 Sum_probs=55.2
Q ss_pred cCCCCeEEEECCC-CcHHHHHhcc-CCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecC-CCCC-----CCCCCeeEEE
Q 039518 226 SAGVFQVLDVGCG-VASFSAFLLP-LDIQTMSFAPKDGHENQIQFALERGIGAMISALST-KQLP-----YPSSSFEMVH 297 (617)
Q Consensus 226 ~~~g~rVLDIGCG-tG~~a~~La~-~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~-~~Lp-----f~d~sFDlV~ 297 (617)
+.++.+||-+|+| .|.++..+++ .|.. .+..++.++...+.|++.|....+...+. +... ...+.+|+|+
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~--~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vi 268 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGAS--QIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSF 268 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC--eEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEE
Confidence 4567889999864 2333333443 2543 24456777888888888776432211110 0000 1122589887
Q ss_pred ecccccccccchHHHHHHHHHhccCC-eEEEEEe
Q 039518 298 CSRCRVDWHANDGILLKEVDRVLRPN-GYFVYSA 330 (617)
Q Consensus 298 ~s~~l~h~~~d~~~~L~el~RvLrPG-G~Liis~ 330 (617)
-.- -....+.+..++|++| |.+++.+
T Consensus 269 d~~-------G~~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 269 ECV-------GDTGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred ECC-------CChHHHHHHHHhhccCCCEEEEEC
Confidence 431 1123577888899999 9998765
No 478
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=60.68 E-value=37 Score=35.96 Aligned_cols=96 Identities=15% Similarity=0.130 Sum_probs=56.6
Q ss_pred ccCCCCeEEEECCC-CcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCC-----CC-CCCCeeEE
Q 039518 225 RSAGVFQVLDVGCG-VASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQL-----PY-PSSSFEMV 296 (617)
Q Consensus 225 r~~~g~rVLDIGCG-tG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~L-----pf-~d~sFDlV 296 (617)
.+.++.+||=.|+| .|..+..+++. |.. .+..++.++...+.+++.|....+...+ ..+ .+ ....+|+|
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G~~--~v~~~~~~~~~~~~~~~~g~~~~v~~~~-~~~~~~i~~~~~~~~~d~v 239 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRGAG--RIIAVGSRPNRVELAKEYGATDIVDYKN-GDVVEQILKLTGGKGVDAV 239 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCCHHHHHHHHHcCCceEecCCC-CCHHHHHHHHhCCCCCcEE
Confidence 34567788888865 33444445543 543 2445567777777887776532221111 111 01 23468999
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+... .....+.++.+.|+++|.++..+
T Consensus 240 ld~~-------g~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 240 IIAG-------GGQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred EECC-------CCHHHHHHHHHHhhcCCEEEEec
Confidence 8431 11357889999999999998754
No 479
>PRK04148 hypothetical protein; Provisional
Probab=59.72 E-value=9.9 Score=35.80 Aligned_cols=92 Identities=18% Similarity=0.158 Sum_probs=57.7
Q ss_pred eeEEeccccccc-hhhhccCCCeEEEEeccCCCC-chhHHHHhhcccccccccCCCCCCCCCccchhhccccccccccCC
Q 039518 469 RNAMDMNAYCGG-FAVALNSLPVWVMNIVPISMK-NTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRG 546 (617)
Q Consensus 469 Rn~mDm~~~~g~-faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGlig~~~~~~~~f~typrtyDl~H~~~~~s~~~~~~ 546 (617)
+.|+|+|||+|. +|..|.+...-||-+ |-. +-++-+-++|+-.+..|+=++=..-=+-+|+|- |
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G~~ViaI---Di~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liy-----s------ 83 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESGFDVIVI---DINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIY-----S------ 83 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCCCEEEEE---ECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEE-----E------
Confidence 569999999995 898998777644433 444 456677888765555544332111002222222 1
Q ss_pred CCCChhhHHhhhhhcccCCceEEEecChHHHHHHHhhhhcCCceEEEeecc
Q 039518 547 EVCSLEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELHSLE 597 (617)
Q Consensus 547 ~~c~~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e 597 (617)
+|-.++++..+.++|+++.=++.+....
T Consensus 84 -----------------------irpp~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 84 -----------------------IRPPRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred -----------------------eCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3455677888888888888888777443
No 480
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=59.56 E-value=48 Score=34.74 Aligned_cols=96 Identities=17% Similarity=0.125 Sum_probs=56.2
Q ss_pred ccCCCCeEEEECCCC-cHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecC---CCC--CCCCCCeeEEE
Q 039518 225 RSAGVFQVLDVGCGV-ASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALST---KQL--PYPSSSFEMVH 297 (617)
Q Consensus 225 r~~~g~rVLDIGCGt-G~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~---~~L--pf~d~sFDlV~ 297 (617)
++.++.+||-.|+|. |..+..+++. +..+ ..+..++...+.+++.+....+...+. +.+ ..+...+|+|+
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v---~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vl 232 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKARGARV---IVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVI 232 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeE---EEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEE
Confidence 346778899998763 5566666654 5543 333445666677766663221111100 001 01334589998
Q ss_pred ecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 298 CSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 298 ~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
... .....+.++.+.|+++|.++..+
T Consensus 233 d~~-------g~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 233 DAT-------GNPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred ECC-------CCHHHHHHHHHHHhcCCEEEEEc
Confidence 531 11346788999999999998765
No 481
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=59.42 E-value=35 Score=35.76 Aligned_cols=95 Identities=17% Similarity=0.165 Sum_probs=53.8
Q ss_pred cCCCCeEEEECCC-CcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEec------CCCCCCCCCCeeEEE
Q 039518 226 SAGVFQVLDVGCG-VASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALS------TKQLPYPSSSFEMVH 297 (617)
Q Consensus 226 ~~~g~rVLDIGCG-tG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d------~~~Lpf~d~sFDlV~ 297 (617)
+.++.+||..|+| .|..+..+++. +.. .+..++.++...+.+++.+....+...+ +.++ ...+.+|+|+
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~--~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~-~~~~~~d~vl 241 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAA--RIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILEL-TGGRGVDCVI 241 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC--EEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHH-cCCCCCcEEE
Confidence 4567788887764 35555555554 432 2333355666666666655321111110 0011 1235699998
Q ss_pred ecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 298 CSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 298 ~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
... .....+.++.+.|+++|.++..+
T Consensus 242 d~~-------g~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 242 EAV-------GFEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred Ecc-------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 431 11257888999999999998764
No 482
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=59.38 E-value=13 Score=39.26 Aligned_cols=96 Identities=13% Similarity=0.185 Sum_probs=65.1
Q ss_pred CCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCCchhHHHHhhcccccccccCC-CC------------CCCCCc
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMKNTLSAIYNRGILGAFHDWCE-PF------------STYPRT 529 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~~~l~~~~~RGlig~~~~~~~-~f------------~typrt 529 (617)
+..+.-|.||=+|-|-||.+-.+++.+- |=.++-++- |---+.+-|..++..|.++. +- ..++.+
T Consensus 72 ~ah~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEI-D~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~ 149 (282)
T COG0421 72 LAHPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEI-DPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEK 149 (282)
T ss_pred hhCCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEc-CHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCc
Confidence 4556679999999999999999987662 111111222 22236778888888886555 11 236789
Q ss_pred cchhhcc---------ccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 530 YDLLHAN---------HLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 530 yDl~H~~---------~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
||+|=.+ .||+ ....=...|.|+|+|.++.+
T Consensus 150 fDvIi~D~tdp~gp~~~Lft-----------~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 150 FDVIIVDSTDPVGPAEALFT-----------EEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCEEEEcCCCCCCcccccCC-----------HHHHHHHHHhcCCCcEEEEe
Confidence 9998532 3333 24566788999999999998
No 483
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=58.72 E-value=7.2 Score=40.61 Aligned_cols=31 Identities=10% Similarity=0.084 Sum_probs=23.1
Q ss_pred HHHhccCCCCCeeeEEeccccccchhhhccCCC
Q 039518 457 YWQLMNVNETEIRNAMDMNAYCGGFAVALNSLP 489 (617)
Q Consensus 457 y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~ 489 (617)
..+.+++..+ .+|+|+|||.|.++.+|.++.
T Consensus 34 i~~~l~~~~~--~~VLEiG~G~G~lt~~L~~~~ 64 (272)
T PRK00274 34 IVDAAGPQPG--DNVLEIGPGLGALTEPLLERA 64 (272)
T ss_pred HHHhcCCCCc--CeEEEeCCCccHHHHHHHHhC
Confidence 3344445555 579999999999999997763
No 484
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=58.48 E-value=39 Score=35.94 Aligned_cols=97 Identities=8% Similarity=0.067 Sum_probs=56.1
Q ss_pred ccCCCCeEEEECCCC-cHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecC--CCC----C-C-CCCCee
Q 039518 225 RSAGVFQVLDVGCGV-ASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALST--KQL----P-Y-PSSSFE 294 (617)
Q Consensus 225 r~~~g~rVLDIGCGt-G~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~--~~L----p-f-~d~sFD 294 (617)
.+.++.+||=+|+|. |..+..+++. +. .+..++.+++.++.+++.|....+...+. +++ . + ....+|
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G~---~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d 239 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMGA---AVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLR 239 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC---eEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCC
Confidence 346678899999854 4454555543 54 34456778888888888775432221110 000 0 0 112344
Q ss_pred ----EEEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 295 ----MVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 295 ----lV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+|+-. . -....+..+.++|++||.+++.+.
T Consensus 240 ~~~d~v~d~------~-g~~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 240 STGWKIFEC------S-GSKPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred CCcCEEEEC------C-CChHHHHHHHHHHhcCCeEEEECc
Confidence 45421 1 123467778889999999998763
No 485
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=57.99 E-value=33 Score=36.21 Aligned_cols=89 Identities=19% Similarity=0.207 Sum_probs=59.4
Q ss_pred eEEEECCC--CcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccccc
Q 039518 231 QVLDVGCG--VASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHAN 308 (617)
Q Consensus 231 rVLDIGCG--tG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d 308 (617)
+|+=+|.| -|+++..|.+.|.. +.+.+.|.+.+.++.+.+.|+......... --.....|+|+.+ .+.. .
T Consensus 5 ~v~IvG~GliG~s~a~~l~~~g~~-v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~---~~~~~~aD~Viva---vPi~-~ 76 (279)
T COG0287 5 KVGIVGLGLMGGSLARALKEAGLV-VRIIGRDRSAATLKAALELGVIDELTVAGL---AEAAAEADLVIVA---VPIE-A 76 (279)
T ss_pred EEEEECCchHHHHHHHHHHHcCCe-EEEEeecCcHHHHHHHhhcCcccccccchh---hhhcccCCEEEEe---ccHH-H
Confidence 47777766 46777777777764 478899999999899888876433222110 1123457999865 2322 4
Q ss_pred hHHHHHHHHHhccCCeEEE
Q 039518 309 DGILLKEVDRVLRPNGYFV 327 (617)
Q Consensus 309 ~~~~L~el~RvLrPGG~Li 327 (617)
...+++++...|++|-.+.
T Consensus 77 ~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 77 TEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred HHHHHHHhcccCCCCCEEE
Confidence 5678888888888886554
No 486
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=57.96 E-value=18 Score=37.21 Aligned_cols=67 Identities=19% Similarity=0.237 Sum_probs=37.4
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHH---HHHHHHh---C--C------CcEEEEecCCC-CCCCCCCeeE
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQ---IQFALER---G--I------GAMISALSTKQ-LPYPSSSFEM 295 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~---lq~A~er---g--~------~~~~~~~d~~~-Lpf~d~sFDl 295 (617)
+|||.=+|-|.-+..++..|.. |++++-|+-. ++.+.++ . . .+.+..+|..+ |+.++++||+
T Consensus 78 ~VLDaTaGLG~Da~vlA~~G~~---V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASLGCK---VTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp -EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred EEEECCCcchHHHHHHHccCCe---EEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 6999999999999988877764 5555655544 3333222 1 1 35666766533 5566889999
Q ss_pred EEecc
Q 039518 296 VHCSR 300 (617)
Q Consensus 296 V~~s~ 300 (617)
|+.--
T Consensus 155 VY~DP 159 (234)
T PF04445_consen 155 VYFDP 159 (234)
T ss_dssp EEE--
T ss_pred EEECC
Confidence 99754
No 487
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=57.42 E-value=54 Score=33.97 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=57.4
Q ss_pred cCCCCeEEEECC--CCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCC-----CCCCCCeeEEE
Q 039518 226 SAGVFQVLDVGC--GVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQL-----PYPSSSFEMVH 297 (617)
Q Consensus 226 ~~~g~rVLDIGC--GtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~L-----pf~d~sFDlV~ 297 (617)
+.+|.+||=.|+ |.|.++..+++. |.. +..++.++...+.+++.|....+.. ...++ ....+.+|+|+
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~---vi~~~~s~~~~~~l~~~Ga~~vi~~-~~~~~~~~v~~~~~~gvd~vl 216 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCK---VIGCAGSDDKVAWLKELGFDAVFNY-KTVSLEEALKEAAPDGIDCYF 216 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCE---EEEEeCCHHHHHHHHHcCCCEEEeC-CCccHHHHHHHHCCCCcEEEE
Confidence 456788988884 566666666654 553 4444566677788877775322221 11111 01124689988
Q ss_pred ecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 298 CSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 298 ~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
-.- ....+.+..+.|+++|.++..+
T Consensus 217 d~~--------g~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 217 DNV--------GGEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred ECC--------CHHHHHHHHHhhccCCEEEEEc
Confidence 431 1256789999999999998764
No 488
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=56.79 E-value=37 Score=36.08 Aligned_cols=127 Identities=12% Similarity=0.161 Sum_probs=65.8
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHH----hhcccccccccCCCCCCC----CCccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIY----NRGILGAFHDWCEPFSTY----PRTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~----~RGlig~~~~~~~~f~ty----prtyDl~H~~~~~ 539 (617)
..|+|++||.|.|+..|.++.- .|+-.|.. ..+..+- +.|+ .-.+-.+.....+ ...||+|-.+
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~d--- 247 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVN--- 247 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEEC---
Confidence 6799999999999999987542 44444544 4443332 2343 1111112211111 2468877633
Q ss_pred cccccCCCCCChhhHHhhhhhcccCCceEEEecChHHH-HHHHhhhhcCCceEEEe---eccccCCCceeEEEEEe
Q 039518 540 SHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEKSLI-TRIRDLAPKFLWDVELH---SLENREKKMESVLICRK 611 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~~~~-~~~~~~~~~~~W~~~~~---~~e~~~~~~~~~l~~~k 611 (617)
..|-.+...++++=.-++|++.++++-++..+ ..++.+ . -|++... |.=+.+..=|-|.+.+|
T Consensus 248 ------PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-~--~y~~~~~~~~DmFP~T~HvE~v~~l~r 314 (315)
T PRK03522 248 ------PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-P--GYRIERVQLFDMFPHTAHYEVLTLLVR 314 (315)
T ss_pred ------CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-c--CcEEEEEEEeccCCCCCeEEEEEEEEc
Confidence 33433333343433337899999999665544 344444 2 4665433 32223333355555443
No 489
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=56.77 E-value=20 Score=39.40 Aligned_cols=38 Identities=32% Similarity=0.393 Sum_probs=26.9
Q ss_pred CeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHH
Q 039518 230 FQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFAL 270 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~ 270 (617)
..|.|+|.|.|.++..|.-. +. +|.++|.+....+.|+
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y~l---sV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSLGYGL---SVKAIEGSQRLVERAQ 193 (476)
T ss_pred CeeEEcCCCchHHHHHHhhccCc---eEEEeccchHHHHHHH
Confidence 45999999999999888644 44 5556677755554443
No 490
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=56.07 E-value=53 Score=34.57 Aligned_cols=95 Identities=13% Similarity=0.151 Sum_probs=57.5
Q ss_pred ccCCCCeEEEECC--CCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHH-hCCCcEEEEecCCCC-----CCCCCCeeE
Q 039518 225 RSAGVFQVLDVGC--GVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALE-RGIGAMISALSTKQL-----PYPSSSFEM 295 (617)
Q Consensus 225 r~~~g~rVLDIGC--GtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~e-rg~~~~~~~~d~~~L-----pf~d~sFDl 295 (617)
++++|.+||=.|+ |.|.++..+++. |.. +.....++...+.+++ .|....+...+...+ ....+.+|+
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~---Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~ 224 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKLKGCY---VVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDI 224 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCE---EEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEE
Confidence 3567888999986 466666666654 554 3344556667777776 565322221110011 011246899
Q ss_pred EEecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 296 VHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 296 V~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
|+-.- ....+.+..+.|+++|.++..+
T Consensus 225 v~d~~--------g~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 225 YFDNV--------GGKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred EEECC--------CHHHHHHHHHHhccCcEEEEec
Confidence 97431 1256888999999999999764
No 491
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=55.42 E-value=10 Score=38.56 Aligned_cols=142 Identities=15% Similarity=0.224 Sum_probs=80.5
Q ss_pred HHHHHhccCCCCCeeeEEeccccccchhhhc----cCCC-eEEEEeccCCCCchhHHHHhhcccc---cc--cccCCCCC
Q 039518 455 RHYWQLMNVNETEIRNAMDMNAYCGGFAVAL----NSLP-VWVMNIVPISMKNTLSAIYNRGILG---AF--HDWCEPFS 524 (617)
Q Consensus 455 ~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l----~~~~-v~vmnv~p~~~~~~l~~~~~RGlig---~~--~~~~~~f~ 524 (617)
.+|..+|- ....-++||.+|.+.|==|..| -+.- +.+.-+-|......-+..-+-|+-. ++ .|+-+.++
T Consensus 48 g~~L~~L~-~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~ 126 (219)
T COG4122 48 GALLRLLA-RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLS 126 (219)
T ss_pred HHHHHHHH-HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHH
Confidence 44555443 2335789999999876333222 2222 3333333332223333444445311 22 47777777
Q ss_pred -CCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe--------------cChHHHHHHHhhhhcCCc
Q 039518 525 -TYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR--------------DEKSLITRIRDLAPKFLW 589 (617)
Q Consensus 525 -typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~--------------d~~~~~~~~~~~~~~~~W 589 (617)
...-+||||=.+ .++-....++=+.=++|||||.+|+- +......+++.+..-+.|
T Consensus 127 ~~~~~~fDliFID---------adK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~ 197 (219)
T COG4122 127 RLLDGSFDLVFID---------ADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLE 197 (219)
T ss_pred hccCCCccEEEEe---------CChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhh
Confidence 366899998733 44444456777777889999999874 222444455665555544
Q ss_pred ----eEEEeeccccCCCceeEEEEEec
Q 039518 590 ----DVELHSLENREKKMESVLICRKK 612 (617)
Q Consensus 590 ----~~~~~~~e~~~~~~~~~l~~~k~ 612 (617)
+..+.. .++.++++.|.
T Consensus 198 ~~~~~t~~lP------~gDGl~v~~k~ 218 (219)
T COG4122 198 DPRYDTVLLP------LGDGLLLSRKR 218 (219)
T ss_pred CcCceeEEEe------cCCceEEEeec
Confidence 444432 23788998885
No 492
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=55.09 E-value=82 Score=33.75 Aligned_cols=123 Identities=13% Similarity=0.112 Sum_probs=76.2
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCC---CCCCeeEEEeccccccc-
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPY---PSSSFEMVHCSRCRVDW- 305 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf---~d~sFDlV~~s~~l~h~- 305 (617)
.+++|+=||.|.+..-+...|..+ +..+|+++.+++.-+.+.....+...|+..+.. ....+|+++.+.---.+
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~--~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS 81 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEI--VFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFS 81 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeE--EEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchh
Confidence 359999999999998888888664 456789988877666654434445555543321 11178999875211111
Q ss_pred -------ccch-H---HHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCce
Q 039518 306 -------HAND-G---ILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWK 357 (617)
Q Consensus 306 -------~~d~-~---~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~ 357 (617)
.+|+ . .-+.++...++| -.|++...+..... +...|+.+.+.+++.|+.
T Consensus 82 ~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~--~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 82 IAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSS--KGQTFDEIKKELEELGYG 141 (328)
T ss_pred hcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhc--CchHHHHHHHHHHHcCCc
Confidence 1122 2 235666667788 44444322222111 445688899999999997
No 493
>PLN02823 spermine synthase
Probab=54.56 E-value=30 Score=37.50 Aligned_cols=100 Identities=13% Similarity=0.156 Sum_probs=52.7
Q ss_pred CCeeeEEeccccccchhhhccCC-CeEEEEeccCCCCchhHHHHhhcccccccc-------------cCCCCCCCCCccc
Q 039518 466 TEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMKNTLSAIYNRGILGAFHD-------------WCEPFSTYPRTYD 531 (617)
Q Consensus 466 ~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~~~l~~~~~RGlig~~~~-------------~~~~f~typrtyD 531 (617)
..-++||-+|+|.|+.+..+++. ++--+-+|=.|. .-+.++ |..++..+. =.+-...-+..||
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~-~vv~la--r~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yD 178 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQ-EVVDFC--RKHLTVNREAFCDKRLELIINDARAELEKRDEKFD 178 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCH-HHHHHH--HHhcccccccccCCceEEEEChhHHHHhhCCCCcc
Confidence 35789999999999998877664 443333343333 222222 222221110 0000111246899
Q ss_pred hhhccccccccccCCCCCC--h-hhHHh-hhhhcccCCceEEEe
Q 039518 532 LLHANHLFSHYKNRGEVCS--L-EDIML-EMDLIIRPQGFIIIR 571 (617)
Q Consensus 532 l~H~~~~~s~~~~~~~~c~--~-~~~l~-e~dRilRP~G~~i~~ 571 (617)
+|=.+ ++... ...-|. . ...+- .+-|.|+|||.+++.
T Consensus 179 vIi~D-~~dp~--~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 179 VIIGD-LADPV--EGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EEEec-CCCcc--ccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 98866 23211 001121 1 13333 578999999999875
No 494
>PRK11524 putative methyltransferase; Provisional
Probab=54.54 E-value=25 Score=36.89 Aligned_cols=44 Identities=20% Similarity=0.057 Sum_probs=35.1
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG 273 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg 273 (617)
.+|+.|||.=+|+|+.+....+.+-. ..++|++++.++.|++|-
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR~---~IG~Ei~~~Y~~~a~~Rl 250 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGRK---FIGIEINSEYIKMGLRRL 250 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCCC---EEEEeCCHHHHHHHHHHH
Confidence 45667999999999888777766654 446699999999999883
No 495
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=54.47 E-value=34 Score=36.81 Aligned_cols=95 Identities=8% Similarity=0.058 Sum_probs=49.3
Q ss_pred CCCCeEEEECCC-CcHHHHHhccC-CCcEEEeeecCCcHHH-HHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 227 AGVFQVLDVGCG-VASFSAFLLPL-DIQTMSFAPKDGHENQ-IQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 227 ~~g~rVLDIGCG-tG~~a~~La~~-gv~~v~v~~iDis~~~-lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
.++.+||-.|+| .|.++..+++. |..+ ..++.+... .+.+++.|....+...+...+.-..+.+|+|+-.-
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~v---i~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~--- 255 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKV---TVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTV--- 255 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEE---EEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECC---
Confidence 456678888875 34444445543 5533 223333333 34445556532221111111110012488887431
Q ss_pred ccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 304 DWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 304 h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.....+.+..++|++||.++....
T Consensus 256 ----g~~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 256 ----SAVHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred ----CCHHHHHHHHHHhcCCcEEEEeCC
Confidence 122367888999999999998653
No 496
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=53.73 E-value=23 Score=34.50 Aligned_cols=42 Identities=17% Similarity=0.019 Sum_probs=31.0
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHH
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALE 271 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~e 271 (617)
.+|..|||.=||+|+.+....+.+-. ..++|+++...+.|.+
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~R~---~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELGRR---YIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT-E---EEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHcCCe---EEEEeCCHHHHHHhcC
Confidence 34666999999999988888777764 4566999999988864
No 497
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=52.28 E-value=15 Score=37.65 Aligned_cols=22 Identities=9% Similarity=0.057 Sum_probs=19.2
Q ss_pred eeeEEeccccccchhhhccCCC
Q 039518 468 IRNAMDMNAYCGGFAVALNSLP 489 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~~ 489 (617)
-.+|+|+|||.|.+...|.+..
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~ 51 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRA 51 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhC
Confidence 4689999999999999997654
No 498
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=51.69 E-value=68 Score=33.76 Aligned_cols=97 Identities=15% Similarity=0.139 Sum_probs=54.7
Q ss_pred ccCCCCeEEEECCCC-cHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCC------CC--CCCCCCee
Q 039518 225 RSAGVFQVLDVGCGV-ASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTK------QL--PYPSSSFE 294 (617)
Q Consensus 225 r~~~g~rVLDIGCGt-G~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~------~L--pf~d~sFD 294 (617)
.+.++.+||-.|+|. |..+..+++. |... +...+.++...+.+++.+....+...+.. .+ ....+.||
T Consensus 159 ~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~--v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d 236 (343)
T cd05285 159 GVRPGDTVLVFGAGPIGLLTAAVAKAFGATK--VVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPD 236 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcE--EEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCC
Confidence 346677888877653 4555555554 5431 33445556666666665543222111100 00 12334599
Q ss_pred EEEecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 295 MVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 295 lV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+|+-.. .....+.++.+.|+++|.++..+
T Consensus 237 ~vld~~-------g~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 237 VVIECT-------GAESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred EEEECC-------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 998431 11236888999999999998765
No 499
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=51.43 E-value=16 Score=37.77 Aligned_cols=28 Identities=7% Similarity=0.088 Sum_probs=22.1
Q ss_pred ccCCCCCeeeEEeccccccchhhhccCCCe
Q 039518 461 MNVNETEIRNAMDMNAYCGGFAVALNSLPV 490 (617)
Q Consensus 461 ~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v 490 (617)
+++..+ .+|+|+|||.|.+...|.....
T Consensus 25 ~~~~~~--~~VLEIG~G~G~lt~~L~~~~~ 52 (258)
T PRK14896 25 AEDTDG--DPVLEIGPGKGALTDELAKRAK 52 (258)
T ss_pred cCCCCc--CeEEEEeCccCHHHHHHHHhCC
Confidence 344444 7899999999999999987643
No 500
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=51.02 E-value=78 Score=33.16 Aligned_cols=96 Identities=14% Similarity=0.135 Sum_probs=54.6
Q ss_pred cCCCCeEEEECCCC-cHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCC---CC-CC-CCCCeeEEEe
Q 039518 226 SAGVFQVLDVGCGV-ASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTK---QL-PY-PSSSFEMVHC 298 (617)
Q Consensus 226 ~~~g~rVLDIGCGt-G~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~---~L-pf-~d~sFDlV~~ 298 (617)
+.++.+||-.|+|. |..+..+++. |+. .+..++.++...+.+.+.+.. .+...... .+ .. ....||+|+.
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G~~--~v~~~~~~~~~~~~l~~~g~~-~~~~~~~~~~~~~~~~~~~~~~d~vld 233 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKILGAK--RVIAVDIDDEKLAVARELGAD-DTINPKEEDVEKVRELTEGRGADLVIE 233 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHcCCC-EEecCccccHHHHHHHhCCCCCCEEEE
Confidence 45677899998654 4455555543 543 134445556666666655542 11111100 00 11 2235999984
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.. .....+..+.+.|+++|.++..+.
T Consensus 234 ~~-------g~~~~~~~~~~~l~~~G~~v~~g~ 259 (343)
T cd08236 234 AA-------GSPATIEQALALARPGGKVVLVGI 259 (343)
T ss_pred CC-------CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 31 224578889999999999987653
Done!