BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039519
         (647 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
           Receptors Of Jawless Vertebrates By Module Engineering
 pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
           Receptors Of Jawless Vertebrates By Module Engineering
          Length = 272

 Score = 40.0 bits (92), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 8/124 (6%)

Query: 391 IQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGI-STLVSLEHLDL 449
           IQ   NVR ++L  NK+ ++S L+  LT   +  ++ N  L  LP G+   L +L+ L L
Sbjct: 59  IQYLPNVRYLALGGNKLHDISALK-ELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVL 116

Query: 450 SSTAITHLPIDL-QKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERL 508
               +  LP  +  KL NL  LNL +    NQ   L    F KL  L   D   ++++ L
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLNLAH----NQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172

Query: 509 KSNV 512
              V
Sbjct: 173 PEGV 176


>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
           Domains
          Length = 308

 Score = 39.7 bits (91), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 12/128 (9%)

Query: 382 GFGLTEAPEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTL 441
           G G+T    +Q   N+  + L  N+I +L+ L+  LT      +S N L  K    I+ L
Sbjct: 50  GTGVTTIEGVQYLNNLIGLELKDNQITDLAPLK-NLTKITELELSGNPL--KNVSAIAGL 106

Query: 442 VSLEHLDLSSTAITHLPIDLQKLVNLKCLNLQYMY-NLNQFPRLVISAFSKLQVLRMFDC 500
            S++ LDL+ST IT    D+  L  L   NLQ +Y +LNQ     IS  + L  L+    
Sbjct: 107 QSIKTLDLTSTQIT----DVTPLAGLS--NLQVLYLDLNQITN--ISPLAGLTNLQYLSI 158

Query: 501 GGSKIERL 508
           G +++  L
Sbjct: 159 GNAQVSDL 166


>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
           Receptors Of Jawless Vertebrates By Module Engineering
          Length = 279

 Score = 39.3 bits (90), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 8/124 (6%)

Query: 391 IQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGI-STLVSLEHLDL 449
           IQ   NVR ++L  NK+ ++S L+  LT   +  ++ N  L  LP G+   L +L+ L L
Sbjct: 59  IQYLPNVRYLALGGNKLHDISALK-ELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVL 116

Query: 450 SSTAITHLPIDL-QKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERL 508
               +  LP  +  KL NL  L   Y+Y+ NQ   L    F KL  L   D   ++++ L
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYL---YLYH-NQLQSLPKGVFDKLTNLTRLDLDNNQLQSL 172

Query: 509 KSNV 512
              V
Sbjct: 173 PEGV 176


>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
          Length = 1263

 Score = 34.7 bits (78), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 226 PNIPELARSVAQECAGLPLALITIGRVMACKKTPQEWHYAIQVLR 270
            ++PE A S+ +EC G PL +  IG ++  +  P  W Y ++ L+
Sbjct: 310 ADLPEQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYYLKQLQ 352


>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
           Bound To Adp
 pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
           Bound To Adp
 pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
           Bound To Adp
 pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
           Bound To Adp
          Length = 591

 Score = 34.7 bits (78), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 227 NIPELARSVAQECAGLPLALITIGRVMACKKTPQEWHYAIQVLR 270
           ++PE A S+ +EC G PL +  IG ++  +  P  W Y ++ L+
Sbjct: 305 DLPEQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYYLKQLQ 346


>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
 pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
 pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
 pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
          Length = 727

 Score = 33.5 bits (75), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 427 NNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLVNLKCLNLQYMYNLNQFPRLVI 486
           N + L +LP  I  L +L  LDLS   +T LP +L       C  L+Y Y  +     + 
Sbjct: 255 NGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG-----SCFQLKYFYFFDNMVTTLP 309

Query: 487 SAFSKLQVLRMFDCGGSKIER 507
             F  L  L+     G+ +E+
Sbjct: 310 WEFGNLCNLQFLGVEGNPLEK 330


>pdb|3OCE|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
           Brucella Melitensis Bound To Cobalt
 pdb|3OCE|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
           Brucella Melitensis Bound To Cobalt
 pdb|3OCE|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
           Brucella Melitensis Bound To Cobalt
 pdb|3OCE|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
           Brucella Melitensis Bound To Cobalt
          Length = 474

 Score = 33.1 bits (74), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 24/46 (52%)

Query: 437 GISTLVSLEHLDLSSTAITHLPIDLQKLVNLKCLNLQYMYNLNQFP 482
           GI TL ++E+  LS  A+ H+P  ++ L  +K       Y L Q P
Sbjct: 25  GIQTLRAVENFSLSDVALNHIPALVRALAMVKKAAATANYKLRQLP 70


>pdb|3OCF|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
           Brucella Melitensis In Native Form
 pdb|3OCF|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
           Brucella Melitensis In Native Form
 pdb|3OCF|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
           Brucella Melitensis In Native Form
 pdb|3OCF|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
           Brucella Melitensis In Native Form
          Length = 478

 Score = 33.1 bits (74), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 24/46 (52%)

Query: 437 GISTLVSLEHLDLSSTAITHLPIDLQKLVNLKCLNLQYMYNLNQFP 482
           GI TL ++E+  LS  A+ H+P  ++ L  +K       Y L Q P
Sbjct: 42  GIQTLRAVENFSLSDVALNHIPALVRALAMVKKAAATANYKLRQLP 87


>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
 pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
           Double-Stranded Rna
 pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
           Double-Stranded Rna
          Length = 697

 Score = 32.0 bits (71), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 6/62 (9%)

Query: 448 DLSSTAITHLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIER 507
           D S   +TH+P DL    N+  LNL +    NQ  RL  + F++   L + D G + I +
Sbjct: 10  DCSHLKLTHIPDDLPS--NITVLNLTH----NQLRRLPPTNFTRYSQLAILDAGFNSISK 63

Query: 508 LK 509
           L+
Sbjct: 64  LE 65


>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
           Murine Apaf-1
          Length = 1256

 Score = 31.6 bits (70), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 227 NIPELARSVAQECAGLPLALITIGRVMACKKTPQEWHYAIQVLR 270
           ++P  A S+ +EC G PL +  IG ++  +  P  W Y ++ L+
Sbjct: 312 DLPAEAHSIIKECKGSPLVVSLIGALL--RDFPNRWAYYLRQLQ 353


>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
          Length = 1249

 Score = 31.6 bits (70), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 227 NIPELARSVAQECAGLPLALITIGRVMACKKTPQEWHYAIQVLR 270
           ++P  A S+ +EC G PL +  IG ++  +  P  W Y ++ L+
Sbjct: 305 DLPAEAHSIIKECKGSPLVVSLIGALL--RDFPNRWAYYLRQLQ 346


>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
           And T399i In Complex With Md-2 And Lps
 pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
           And T399i In Complex With Md-2 And Lps
          Length = 635

 Score = 31.2 bits (69), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 116/269 (43%), Gaps = 48/269 (17%)

Query: 277 PGMGKEVYP---LLKYSYDSLPDETIRSCLL-YCGLFPEDYRTRKSELIDCWIGEGFLDQ 332
           PG  KE+      L+ ++DSL    +++C+    GL  E +R    E    +  EG L++
Sbjct: 218 PGAFKEIRLHKLTLRNNFDSL--NVMKTCIQGLAGL--EVHRLVLGE----FRNEGNLEK 269

Query: 333 YDRSG--------------AYDEGYYIIGIL-LHACLLXXXXXXXXXXXXXXXXXXXXNF 377
           +D+S               AY + YY+ GI+ L  CL                     NF
Sbjct: 270 FDKSALEGLCNLTIEEFRLAYLD-YYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 328

Query: 378 ------LVHAGFGLTEAPEIQNWRNVRRMSLMKNKIEN-LSELQ-PALTFFLFFNMSNNH 429
                 LV+  FG  + P ++  ++++R++   NK  N  SE+  P+L F    ++S N 
Sbjct: 329 GWQHLELVNCKFG--QFPTLK-LKSLKRLTFTSNKGGNAFSEVDLPSLEFL---DLSRNG 382

Query: 430 LLWKLPLGISTL--VSLEHLDLSSTAITHLPIDLQKLVNLKCLNLQYMYNLNQFPRLVIS 487
           L +K     S    +SL++LDLS   +  +  +   L  L+ L+ Q+  NL Q      S
Sbjct: 383 LSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSE--FS 439

Query: 488 AFSKLQVLRMFDCGGSKIERLKSNVLFGG 516
            F  L+ L   D   +   R+  N +F G
Sbjct: 440 VFLSLRNLIYLDISHTHT-RVAFNGIFNG 467


>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
           The Entire Ectodomain Of Its Receptor
 pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
           The Entire Ectodomain Of Its Receptor
 pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
           The Entire Ectodomain Of Its Receptor
          Length = 350

 Score = 30.8 bits (68), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 39/158 (24%)

Query: 428 NHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLVNLKCLNLQYMYNLN-------- 479
           N+LL+  P     L +L++L +S+T I HLP D+ K+ +L+ + L    N+N        
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLP-DVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 480 ----QFPRLVI------------SAFSKLQVLRMFDCGGSKIERLKSNVLFGG------- 516
                F  +++            SAF+  Q+  +     + +E L ++V  G        
Sbjct: 149 FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208

Query: 517 ------HQVLVEELIGMKYLMA-VTITLKRLQALQELL 547
                 H +    L  +K L A  T  LK+L  L++L+
Sbjct: 209 ISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLV 246


>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
           Binding Domain
          Length = 705

 Score = 30.4 bits (67), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 442 VSLEHLDLSSTAITHLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCG 501
           VS E  D S   +T +P DL    N+  LNL +    NQ  RL  + F++   L   D G
Sbjct: 9   VSHEVADCSHLKLTQVPDDLP--TNITVLNLTH----NQLRRLPAANFTRYSQLTSLDVG 62

Query: 502 GSKIERLK 509
            + I +L+
Sbjct: 63  FNTISKLE 70


>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
           Complexed With Its Receptor
 pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
           Complexed With Its Receptor
          Length = 252

 Score = 30.4 bits (67), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 428 NHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLVNLKCLNLQYMYNLN 479
           N+LL+  P     L +L++L +S+T I HLP D+ K+ +L+ + L    N+N
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLP-DVHKIHSLQKVLLDIQDNIN 140


>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
           Three Fabs (Form1)
 pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
           Three Fabs (Form2)
          Length = 694

 Score = 30.4 bits (67), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 442 VSLEHLDLSSTAITHLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCG 501
           VS E  D S   +T +P DL    N+  LNL +    NQ  RL  + F++   L   D G
Sbjct: 14  VSHEVADCSHLKLTQVPDDLP--TNITVLNLTH----NQLRRLPAANFTRYSQLTSLDVG 67

Query: 502 GSKIERLK 509
            + I +L+
Sbjct: 68  FNTISKLE 75


>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
          Length = 680

 Score = 30.0 bits (66), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 442 VSLEHLDLSSTAITHLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCG 501
           VS E  D S   +T +P DL    N+  LNL +    NQ  RL  + F++   L   D G
Sbjct: 4   VSHEVADCSHLKLTQVPDDLP--TNITVLNLTH----NQLRRLPAANFTRYSQLTSLDVG 57

Query: 502 GSKIERLK 509
            + I +L+
Sbjct: 58  FNTISKLE 65


>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
 pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
 pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
 pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
          Length = 606

 Score = 29.6 bits (65), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 13/179 (7%)

Query: 433 KLPLGISTLVSLEHLDLSSTAITHLPI-DLQKLVNLKCLNLQYMYNLNQFPRLVISAFSK 491
           KLP   S L +L H+DLS   I  + + DLQ L     +NL    +LN    +   AF  
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 203

Query: 492 LQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQALQ--ELLIS 549
           +++  +   G        SN++    +  ++ L G+     +    K  + L+  E  I 
Sbjct: 204 IKLHELTLRGNFN----SSNIM----KTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255

Query: 550 QELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGC--KHLEDFQMIIQRSSLSV 606
           + L   T   F   + +  S DI    CL N++ + +AG   K+LED     +  SLS+
Sbjct: 256 EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSI 314


>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
          Length = 599

 Score = 29.6 bits (65), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 13/179 (7%)

Query: 433 KLPLGISTLVSLEHLDLSSTAITHLPI-DLQKLVNLKCLNLQYMYNLNQFPRLVISAFSK 491
           KLP   S L +L H+DLS   I  + + DLQ L     +NL    +LN    +   AF  
Sbjct: 139 KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 198

Query: 492 LQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQALQ--ELLIS 549
           +++  +   G        SN++    +  ++ L G+     +    K  + L+  E  I 
Sbjct: 199 IKLHELTLRGNFN----SSNIM----KTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 250

Query: 550 QELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGC--KHLEDFQMIIQRSSLSV 606
           + L   T   F   + +  S DI    CL N++ + +AG   K+LED     +  SLS+
Sbjct: 251 EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSI 309


>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
           Ra Complex
 pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
           Ra Complex
          Length = 605

 Score = 28.9 bits (63), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 14/23 (60%), Positives = 16/23 (69%)

Query: 432 WKLPLGISTLVSLEHLDLSSTAI 454
           +KLP   S L +LEHLDLSS  I
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKI 161


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.140    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,619,329
Number of Sequences: 62578
Number of extensions: 665113
Number of successful extensions: 1288
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1267
Number of HSP's gapped (non-prelim): 65
length of query: 647
length of database: 14,973,337
effective HSP length: 105
effective length of query: 542
effective length of database: 8,402,647
effective search space: 4554234674
effective search space used: 4554234674
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)