Query 039519
Match_columns 647
No_of_seqs 327 out of 3254
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 10:30:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039519.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039519hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.3E-73 7.1E-78 635.6 39.6 599 1-613 64-781 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.2E-55 7E-60 517.3 34.8 461 12-501 108-715 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1E-39 2.2E-44 331.5 14.9 252 81-333 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.7 3.2E-17 6.9E-22 194.4 12.4 227 392-637 137-389 (968)
5 PLN00113 leucine-rich repeat r 99.7 1.3E-16 2.8E-21 189.2 13.0 224 393-637 116-365 (968)
6 KOG0444 Cytoskeletal regulator 99.7 6.4E-18 1.4E-22 173.3 -2.2 215 389-611 97-325 (1255)
7 KOG4194 Membrane glycoprotein 99.6 6.6E-16 1.4E-20 157.8 5.2 246 382-637 111-374 (873)
8 KOG0444 Cytoskeletal regulator 99.6 1.2E-16 2.6E-21 164.1 -1.7 252 375-636 34-299 (1255)
9 KOG0472 Leucine-rich repeat pr 99.6 3.3E-16 7.2E-21 153.4 1.1 226 382-613 215-539 (565)
10 KOG4194 Membrane glycoprotein 99.6 2.4E-16 5.2E-21 161.0 -0.9 99 396-496 174-275 (873)
11 KOG0472 Leucine-rich repeat pr 99.5 3.7E-17 7.9E-22 160.0 -10.9 207 386-613 82-308 (565)
12 PLN03210 Resistant to P. syrin 99.5 6.1E-14 1.3E-18 167.0 12.2 79 419-500 612-691 (1153)
13 KOG0617 Ras suppressor protein 99.5 1.9E-15 4.2E-20 131.4 -3.3 137 386-540 24-162 (264)
14 KOG0618 Serine/threonine phosp 99.4 1.2E-14 2.6E-19 156.5 -0.6 231 375-613 221-487 (1081)
15 KOG0617 Ras suppressor protein 99.4 6.4E-15 1.4E-19 128.2 -4.7 148 378-543 38-188 (264)
16 KOG4237 Extracellular matrix p 99.4 1.7E-13 3.7E-18 134.4 1.4 238 375-617 48-361 (498)
17 PRK15387 E3 ubiquitin-protein 99.3 2.1E-12 4.7E-17 143.3 9.0 219 376-624 225-465 (788)
18 PRK15370 E3 ubiquitin-protein 99.3 1.2E-11 2.6E-16 138.3 9.6 207 378-612 183-398 (754)
19 PRK15370 E3 ubiquitin-protein 99.3 6E-12 1.3E-16 140.7 7.2 212 376-613 202-426 (754)
20 PRK15387 E3 ubiquitin-protein 99.1 6.6E-11 1.4E-15 131.7 7.8 233 375-639 203-456 (788)
21 KOG0618 Serine/threonine phosp 99.1 9.4E-12 2E-16 134.6 1.1 210 395-613 45-275 (1081)
22 KOG4237 Extracellular matrix p 99.1 1.2E-11 2.6E-16 121.7 -0.0 233 388-641 37-335 (498)
23 KOG0532 Leucine-rich repeat (L 99.0 1.3E-11 2.9E-16 126.7 -4.4 193 394-612 74-270 (722)
24 cd00116 LRR_RI Leucine-rich re 99.0 2.1E-10 4.5E-15 118.3 4.3 38 438-475 77-118 (319)
25 PF14580 LRR_9: Leucine-rich r 99.0 4.3E-10 9.2E-15 102.8 3.8 138 385-536 9-148 (175)
26 cd00116 LRR_RI Leucine-rich re 98.9 1.2E-09 2.6E-14 112.6 5.5 207 393-612 49-288 (319)
27 COG4886 Leucine-rich repeat (L 98.8 4.1E-09 8.8E-14 112.1 5.1 108 388-498 109-217 (394)
28 PF14580 LRR_9: Leucine-rich r 98.8 2.4E-09 5.2E-14 97.9 2.1 123 402-542 4-127 (175)
29 KOG4658 Apoptotic ATPase [Sign 98.7 7.9E-09 1.7E-13 117.7 5.7 242 385-633 559-824 (889)
30 KOG3207 Beta-tubulin folding c 98.7 3.1E-09 6.8E-14 106.4 1.0 105 392-499 118-231 (505)
31 KOG1259 Nischarin, modulator o 98.6 9.4E-09 2E-13 97.9 1.9 135 440-597 282-417 (490)
32 PRK04841 transcriptional regul 98.6 1.2E-06 2.6E-11 103.8 18.8 267 71-366 9-321 (903)
33 PRK00411 cdc6 cell division co 98.5 5.6E-06 1.2E-10 88.0 20.0 103 76-178 30-150 (394)
34 COG4886 Leucine-rich repeat (L 98.5 6.1E-08 1.3E-12 103.1 4.6 190 399-613 97-288 (394)
35 KOG0532 Leucine-rich repeat (L 98.5 4.6E-09 1E-13 108.4 -3.9 189 399-613 54-245 (722)
36 KOG1259 Nischarin, modulator o 98.5 8.4E-09 1.8E-13 98.3 -2.5 134 392-543 281-414 (490)
37 KOG3207 Beta-tubulin folding c 98.5 1.8E-08 3.8E-13 101.1 -1.8 187 390-612 141-336 (505)
38 PLN03150 hypothetical protein; 98.4 5.8E-07 1.3E-11 100.4 7.4 102 396-498 419-523 (623)
39 TIGR02928 orc1/cdc6 family rep 98.3 7.5E-05 1.6E-09 78.5 21.8 102 76-178 15-141 (365)
40 KOG2120 SCF ubiquitin ligase, 98.3 1.2E-07 2.5E-12 90.6 -0.7 179 418-613 185-374 (419)
41 KOG0531 Protein phosphatase 1, 98.3 1.7E-07 3.8E-12 99.9 0.2 97 396-497 73-169 (414)
42 KOG0531 Protein phosphatase 1, 98.2 2.2E-07 4.8E-12 99.1 -0.8 105 391-499 91-195 (414)
43 PF13855 LRR_8: Leucine rich r 98.2 1.1E-06 2.3E-11 65.9 3.1 56 419-475 2-59 (61)
44 TIGR03015 pepcterm_ATPase puta 98.2 0.00011 2.4E-09 73.7 18.6 154 95-253 41-242 (269)
45 PLN03150 hypothetical protein; 98.2 4.6E-06 9.9E-11 93.3 8.7 80 419-499 419-499 (623)
46 PF13855 LRR_8: Leucine rich r 98.1 3.1E-06 6.7E-11 63.4 4.1 59 395-454 1-61 (61)
47 PF12799 LRR_4: Leucine Rich r 98.0 5.9E-06 1.3E-10 56.8 4.0 41 442-483 1-41 (44)
48 PF01637 Arch_ATPase: Archaeal 98.0 8.5E-06 1.8E-10 79.6 6.8 34 78-111 1-34 (234)
49 PRK00080 ruvB Holliday junctio 98.0 3.6E-05 7.7E-10 79.4 11.5 252 76-358 25-310 (328)
50 KOG1909 Ran GTPase-activating 98.0 5.4E-06 1.2E-10 81.4 4.8 92 389-482 24-136 (382)
51 TIGR00635 ruvB Holliday juncti 97.9 0.00048 1E-08 70.4 17.5 251 76-358 4-289 (305)
52 PTZ00112 origin recognition co 97.9 0.00098 2.1E-08 74.1 20.0 102 76-178 755-881 (1164)
53 PRK15386 type III secretion pr 97.9 2.4E-05 5.2E-10 80.6 7.4 59 418-482 52-111 (426)
54 PF05729 NACHT: NACHT domain 97.9 1.9E-05 4.1E-10 72.6 5.6 101 98-206 1-132 (166)
55 PF12799 LRR_4: Leucine Rich r 97.8 1.9E-05 4E-10 54.3 3.0 40 418-458 1-40 (44)
56 COG2909 MalT ATP-dependent tra 97.8 0.00024 5.2E-09 78.1 12.6 269 72-366 15-327 (894)
57 KOG2120 SCF ubiquitin ligase, 97.7 1.9E-06 4.2E-11 82.5 -3.9 197 396-606 186-391 (419)
58 KOG4579 Leucine-rich repeat (L 97.7 3.6E-06 7.9E-11 71.5 -2.1 109 396-510 28-140 (177)
59 cd00009 AAA The AAA+ (ATPases 97.7 0.00017 3.6E-09 64.5 8.3 113 79-205 1-131 (151)
60 PTZ00202 tuzin; Provisional 97.7 0.001 2.2E-08 68.5 14.2 90 75-172 261-367 (550)
61 PRK15386 type III secretion pr 97.7 7.7E-05 1.7E-09 76.9 6.3 82 391-483 48-132 (426)
62 KOG3665 ZYG-1-like serine/thre 97.6 3.3E-05 7.2E-10 86.3 3.4 102 419-536 123-228 (699)
63 PF13401 AAA_22: AAA domain; P 97.6 8.8E-05 1.9E-09 65.2 5.3 103 97-203 4-125 (131)
64 PF13191 AAA_16: AAA ATPase do 97.6 8.6E-05 1.9E-09 69.7 5.5 35 77-111 1-38 (185)
65 KOG2982 Uncharacterized conser 97.6 7.6E-06 1.7E-10 78.5 -2.2 227 397-636 47-287 (418)
66 KOG4579 Leucine-rich repeat (L 97.5 1.4E-05 2.9E-10 68.1 -0.9 92 393-486 51-143 (177)
67 KOG1859 Leucine-rich repeat pr 97.5 1.8E-06 3.8E-11 92.0 -7.7 128 394-540 163-291 (1096)
68 KOG1909 Ran GTPase-activating 97.5 5.8E-05 1.3E-09 74.3 2.6 184 418-613 92-309 (382)
69 KOG1859 Leucine-rich repeat pr 97.5 7.7E-06 1.7E-10 87.3 -3.8 85 523-613 204-290 (1096)
70 KOG2982 Uncharacterized conser 97.5 2.1E-05 4.5E-10 75.6 -0.8 198 394-610 70-287 (418)
71 KOG1644 U2-associated snRNP A' 97.3 0.00032 7E-09 64.0 4.5 126 397-536 21-148 (233)
72 COG1474 CDC6 Cdc6-related prot 97.2 0.0025 5.4E-08 66.0 11.1 101 76-178 17-135 (366)
73 cd01128 rho_factor Transcripti 97.1 0.00051 1.1E-08 67.1 4.7 80 96-177 15-114 (249)
74 KOG2543 Origin recognition com 97.1 0.0019 4.1E-08 64.8 8.1 108 76-183 6-132 (438)
75 COG5238 RNA1 Ran GTPase-activa 97.1 0.0006 1.3E-08 65.0 4.4 205 392-613 27-283 (388)
76 PF13173 AAA_14: AAA domain 97.0 0.0004 8.7E-09 60.8 2.0 93 97-208 2-103 (128)
77 PRK04195 replication factor C 96.9 0.021 4.6E-07 62.1 15.6 36 76-111 14-53 (482)
78 KOG2739 Leucine-rich acidic nu 96.9 0.00042 9.2E-09 66.0 1.9 105 395-502 43-155 (260)
79 KOG3665 ZYG-1-like serine/thre 96.9 0.00057 1.2E-08 76.6 3.3 46 575-622 216-268 (699)
80 TIGR00767 rho transcription te 96.9 0.003 6.5E-08 65.1 7.7 82 96-177 167-266 (415)
81 PRK09376 rho transcription ter 96.8 0.0027 5.8E-08 65.1 7.0 80 96-177 168-267 (416)
82 PHA02544 44 clamp loader, smal 96.8 0.0056 1.2E-07 62.9 9.1 36 76-111 21-57 (316)
83 KOG1644 U2-associated snRNP A' 96.7 0.0033 7.2E-08 57.6 6.1 105 421-542 22-127 (233)
84 KOG2739 Leucine-rich acidic nu 96.7 0.0011 2.3E-08 63.3 2.5 83 415-502 40-128 (260)
85 PRK07003 DNA polymerase III su 96.6 0.022 4.7E-07 63.3 12.4 36 76-111 16-52 (830)
86 COG3903 Predicted ATPase [Gene 96.6 0.0023 5.1E-08 65.1 4.4 207 96-313 13-255 (414)
87 PRK13342 recombination factor 96.4 0.018 4E-07 61.3 10.5 36 76-111 12-50 (413)
88 PRK06893 DNA replication initi 96.4 0.036 7.9E-07 53.8 11.2 16 96-111 38-53 (229)
89 TIGR03420 DnaA_homol_Hda DnaA 96.3 0.03 6.5E-07 54.3 10.2 31 81-111 22-52 (226)
90 COG3899 Predicted ATPase [Gene 96.2 0.033 7.1E-07 64.6 11.3 83 225-313 236-324 (849)
91 PRK05564 DNA polymerase III su 96.1 0.016 3.6E-07 59.2 7.6 111 76-205 4-134 (313)
92 PRK11331 5-methylcytosine-spec 96.0 0.032 6.9E-07 58.7 9.3 96 76-178 175-284 (459)
93 PF00560 LRR_1: Leucine Rich R 96.0 0.0026 5.7E-08 36.3 0.8 20 444-463 2-21 (22)
94 KOG2227 Pre-initiation complex 96.0 0.063 1.4E-06 55.7 11.0 100 76-177 150-267 (529)
95 PRK12402 replication factor C 95.9 0.013 2.8E-07 60.7 6.2 36 76-111 15-50 (337)
96 PRK08727 hypothetical protein; 95.9 0.057 1.2E-06 52.6 10.2 36 76-111 19-55 (233)
97 COG5238 RNA1 Ran GTPase-activa 95.9 0.008 1.7E-07 57.5 3.8 204 417-638 29-282 (388)
98 PRK14961 DNA polymerase III su 95.9 0.06 1.3E-06 56.3 10.7 36 76-111 16-52 (363)
99 KOG4341 F-box protein containi 95.8 0.00094 2E-08 67.5 -2.9 225 396-635 139-379 (483)
100 PLN03025 replication factor C 95.8 0.023 5E-07 58.3 7.0 36 76-111 13-48 (319)
101 KOG2123 Uncharacterized conser 95.6 0.00089 1.9E-08 64.1 -3.8 100 394-496 18-123 (388)
102 TIGR02903 spore_lon_C ATP-depe 95.5 0.078 1.7E-06 59.3 10.5 128 76-204 154-334 (615)
103 PRK14957 DNA polymerase III su 95.4 0.034 7.3E-07 60.6 7.0 36 76-111 16-52 (546)
104 PRK08691 DNA polymerase III su 95.4 0.035 7.6E-07 61.5 7.0 36 76-111 16-52 (709)
105 KOG2123 Uncharacterized conser 95.3 0.0019 4E-08 61.9 -2.6 108 416-536 17-125 (388)
106 PRK14958 DNA polymerase III su 95.3 0.043 9.3E-07 59.7 7.4 36 76-111 16-52 (509)
107 PRK00440 rfc replication facto 95.2 0.048 1E-06 56.0 7.3 36 76-111 17-52 (319)
108 PRK14963 DNA polymerase III su 95.2 0.17 3.6E-06 55.1 11.4 36 76-111 14-50 (504)
109 PF05673 DUF815: Protein of un 95.2 0.059 1.3E-06 51.7 7.0 112 76-208 27-155 (249)
110 PRK14960 DNA polymerase III su 95.1 0.044 9.6E-07 60.2 6.8 36 76-111 15-51 (702)
111 CHL00095 clpC Clp protease ATP 95.1 0.045 9.7E-07 63.6 7.3 36 76-111 179-214 (821)
112 PRK07471 DNA polymerase III su 95.1 0.16 3.4E-06 52.9 10.7 39 73-111 16-55 (365)
113 PRK05896 DNA polymerase III su 95.1 0.13 2.9E-06 56.3 10.2 36 76-111 16-52 (605)
114 PRK10536 hypothetical protein; 95.1 0.047 1E-06 53.0 6.1 34 76-111 55-88 (262)
115 PRK14949 DNA polymerase III su 95.0 0.047 1E-06 62.0 6.8 36 76-111 16-52 (944)
116 PRK13341 recombination factor 95.0 0.053 1.1E-06 61.4 7.1 36 76-111 28-66 (725)
117 PRK12323 DNA polymerase III su 95.0 0.065 1.4E-06 58.8 7.4 36 76-111 16-52 (700)
118 PRK14964 DNA polymerase III su 95.0 0.077 1.7E-06 57.0 7.9 36 76-111 13-49 (491)
119 PF04665 Pox_A32: Poxvirus A32 94.9 0.031 6.7E-07 53.9 4.2 25 99-123 15-49 (241)
120 PRK07940 DNA polymerase III su 94.9 0.13 2.8E-06 54.1 9.2 36 76-111 5-50 (394)
121 COG2256 MGS1 ATPase related to 94.9 0.083 1.8E-06 53.9 7.3 103 76-202 24-139 (436)
122 TIGR02397 dnaX_nterm DNA polym 94.9 0.35 7.6E-06 50.5 12.6 36 76-111 14-50 (355)
123 PRK14969 DNA polymerase III su 94.8 0.093 2E-06 57.5 8.4 36 76-111 16-52 (527)
124 PRK14962 DNA polymerase III su 94.8 0.064 1.4E-06 57.8 7.0 36 76-111 14-50 (472)
125 TIGR02639 ClpA ATP-dependent C 94.8 0.063 1.4E-06 61.6 7.3 36 76-111 182-217 (731)
126 KOG0473 Leucine-rich repeat pr 94.8 0.0015 3.2E-08 61.0 -4.7 86 390-476 37-122 (326)
127 TIGR00678 holB DNA polymerase 94.7 0.17 3.6E-06 47.5 8.7 26 86-111 2-28 (188)
128 PRK14955 DNA polymerase III su 94.6 0.14 3.1E-06 54.2 8.9 36 76-111 16-52 (397)
129 PRK08084 DNA replication initi 94.6 0.19 4.1E-06 49.0 9.1 33 79-111 26-59 (235)
130 smart00382 AAA ATPases associa 94.5 0.082 1.8E-06 46.3 6.0 79 98-180 3-92 (148)
131 PRK06645 DNA polymerase III su 94.5 0.11 2.5E-06 56.2 8.0 36 76-111 21-57 (507)
132 KOG1947 Leucine rich repeat pr 94.5 0.014 3.1E-07 63.6 1.0 10 581-590 403-412 (482)
133 KOG0991 Replication factor C, 94.4 0.08 1.7E-06 49.7 5.6 36 76-111 27-62 (333)
134 PF05621 TniB: Bacterial TniB 94.4 0.27 5.9E-06 48.9 9.6 100 76-177 34-156 (302)
135 PRK10865 protein disaggregatio 94.4 0.098 2.1E-06 60.9 7.6 36 76-111 178-213 (857)
136 PRK14951 DNA polymerase III su 94.4 0.12 2.7E-06 57.1 8.0 36 76-111 16-52 (618)
137 PF13504 LRR_7: Leucine rich r 94.3 0.03 6.4E-07 29.6 1.5 16 443-458 2-17 (17)
138 PRK07994 DNA polymerase III su 94.2 0.078 1.7E-06 58.9 5.9 36 76-111 16-52 (647)
139 KOG2028 ATPase related to the 94.0 0.13 2.9E-06 51.5 6.5 107 78-204 140-261 (554)
140 KOG1947 Leucine rich repeat pr 94.0 0.01 2.3E-07 64.7 -1.3 227 394-635 187-434 (482)
141 TIGR01242 26Sp45 26S proteasom 94.0 0.13 2.7E-06 54.0 6.9 34 78-111 124-170 (364)
142 TIGR03345 VI_ClpV1 type VI sec 94.0 0.16 3.5E-06 59.0 8.2 36 76-111 187-222 (852)
143 PRK09087 hypothetical protein; 94.0 0.46 9.9E-06 45.9 10.2 16 96-111 43-58 (226)
144 PRK08181 transposase; Validate 93.9 0.039 8.6E-07 54.6 2.7 15 97-111 106-120 (269)
145 PF05496 RuvB_N: Holliday junc 93.9 0.22 4.7E-06 47.3 7.5 37 75-111 23-64 (233)
146 PRK14970 DNA polymerase III su 93.9 0.19 4.2E-06 52.7 8.1 36 76-111 17-53 (367)
147 KOG1514 Origin recognition com 93.9 2.4 5.2E-05 46.7 16.0 96 77-177 397-519 (767)
148 TIGR03346 chaperone_ClpB ATP-d 93.7 0.13 2.8E-06 60.1 6.9 36 76-111 173-208 (852)
149 KOG4341 F-box protein containi 93.7 0.04 8.6E-07 56.2 2.3 62 440-501 292-357 (483)
150 PRK09112 DNA polymerase III su 93.6 0.53 1.2E-05 48.7 10.5 41 71-111 18-59 (351)
151 PRK14954 DNA polymerase III su 93.4 0.32 6.9E-06 54.1 9.0 36 76-111 16-52 (620)
152 PRK14956 DNA polymerase III su 93.4 0.19 4.2E-06 53.6 6.9 36 76-111 18-54 (484)
153 PRK08116 hypothetical protein; 93.4 0.08 1.7E-06 52.7 3.8 91 98-203 115-220 (268)
154 TIGR02881 spore_V_K stage V sp 93.1 0.21 4.5E-06 49.6 6.5 35 77-111 7-56 (261)
155 PRK07764 DNA polymerase III su 93.1 0.72 1.6E-05 53.2 11.4 36 76-111 15-51 (824)
156 PF00560 LRR_1: Leucine Rich R 93.1 0.048 1E-06 31.0 1.0 21 419-440 1-21 (22)
157 COG2255 RuvB Holliday junction 93.0 2.6 5.6E-05 41.4 13.1 36 76-111 26-66 (332)
158 PRK06305 DNA polymerase III su 93.0 0.87 1.9E-05 49.0 11.4 36 76-111 17-53 (451)
159 PRK08903 DnaA regulatory inact 93.0 0.68 1.5E-05 44.8 9.8 36 76-111 18-56 (227)
160 PF08423 Rad51: Rad51; InterP 93.0 0.29 6.3E-06 48.3 7.1 80 96-176 37-143 (256)
161 PF00004 AAA: ATPase family as 92.9 0.16 3.4E-06 44.2 4.6 12 100-111 1-12 (132)
162 PF14516 AAA_35: AAA-like doma 92.8 6.2 0.00014 40.6 17.0 101 76-178 11-139 (331)
163 KOG0733 Nuclear AAA ATPase (VC 92.7 0.43 9.3E-06 51.3 8.1 82 77-177 191-293 (802)
164 KOG0989 Replication factor C, 92.6 0.13 2.8E-06 50.6 3.8 36 76-111 36-71 (346)
165 PRK09111 DNA polymerase III su 92.5 0.32 6.9E-06 54.0 7.3 36 76-111 24-60 (598)
166 PHA00729 NTP-binding motif con 92.4 0.34 7.4E-06 46.3 6.4 25 87-111 7-31 (226)
167 PRK14959 DNA polymerase III su 92.4 0.33 7.1E-06 53.6 7.2 36 76-111 16-52 (624)
168 TIGR02238 recomb_DMC1 meiotic 92.4 0.66 1.4E-05 47.2 8.9 80 96-176 95-201 (313)
169 cd01393 recA_like RecA is a b 92.3 0.84 1.8E-05 44.1 9.3 81 96-177 18-125 (226)
170 PRK12608 transcription termina 92.2 0.46 1E-05 48.9 7.5 92 86-177 121-231 (380)
171 PRK06647 DNA polymerase III su 92.1 1.9 4.1E-05 47.7 12.7 36 76-111 16-52 (563)
172 PF11868 DUF3388: Protein of u 92.1 0.21 4.6E-06 43.9 4.1 38 89-126 46-88 (192)
173 PF13177 DNA_pol3_delta2: DNA 91.9 0.39 8.5E-06 43.7 6.1 107 80-205 1-143 (162)
174 PRK14950 DNA polymerase III su 91.9 0.095 2.1E-06 58.4 2.4 36 76-111 16-52 (585)
175 PRK11034 clpA ATP-dependent Cl 91.8 0.36 7.9E-06 55.1 6.9 36 76-111 186-221 (758)
176 PRK03992 proteasome-activating 91.8 0.44 9.5E-06 50.3 7.1 34 78-111 133-179 (389)
177 TIGR03345 VI_ClpV1 type VI sec 91.7 0.33 7.1E-06 56.5 6.5 36 76-111 566-610 (852)
178 PRK06526 transposase; Provisio 91.6 0.12 2.7E-06 50.8 2.6 16 96-111 97-112 (254)
179 PRK12377 putative replication 91.6 1.7 3.6E-05 42.6 10.4 16 96-111 100-115 (248)
180 PF00308 Bac_DnaA: Bacterial d 91.6 1.6 3.6E-05 41.9 10.3 108 79-204 12-140 (219)
181 KOG2004 Mitochondrial ATP-depe 91.4 0.52 1.1E-05 51.7 7.1 36 76-111 411-452 (906)
182 PRK14948 DNA polymerase III su 91.4 2.5 5.4E-05 47.4 12.9 36 76-111 16-52 (620)
183 smart00763 AAA_PrkA PrkA AAA d 91.4 0.44 9.5E-06 48.8 6.3 35 77-111 52-92 (361)
184 TIGR03346 chaperone_ClpB ATP-d 91.3 0.5 1.1E-05 55.3 7.6 36 76-111 565-609 (852)
185 PF13306 LRR_5: Leucine rich r 91.3 0.57 1.2E-05 40.5 6.3 101 391-498 8-111 (129)
186 PRK14952 DNA polymerase III su 91.0 0.77 1.7E-05 50.8 8.3 36 76-111 13-49 (584)
187 PRK08451 DNA polymerase III su 91.0 0.68 1.5E-05 50.4 7.7 36 76-111 14-50 (535)
188 TIGR02237 recomb_radB DNA repa 90.9 0.39 8.5E-06 45.8 5.2 39 96-135 11-59 (209)
189 PLN03187 meiotic recombination 90.9 1.1 2.5E-05 46.0 8.8 80 96-176 125-231 (344)
190 PRK06620 hypothetical protein; 90.8 0.76 1.6E-05 44.0 7.1 14 98-111 45-58 (214)
191 TIGR02639 ClpA ATP-dependent C 90.8 0.53 1.1E-05 54.2 7.0 94 76-177 454-564 (731)
192 KOG2228 Origin recognition com 90.6 1.3 2.8E-05 44.4 8.3 131 76-206 24-184 (408)
193 PRK09361 radB DNA repair and r 90.5 0.6 1.3E-05 45.1 6.3 37 96-133 22-68 (225)
194 smart00370 LRR Leucine-rich re 90.5 0.2 4.2E-06 29.7 1.8 19 442-460 2-20 (26)
195 smart00369 LRR_TYP Leucine-ric 90.5 0.2 4.2E-06 29.7 1.8 19 442-460 2-20 (26)
196 PF00448 SRP54: SRP54-type pro 90.5 0.72 1.6E-05 43.4 6.5 79 97-175 1-92 (196)
197 PRK14971 DNA polymerase III su 90.4 0.86 1.9E-05 51.0 8.1 36 76-111 17-53 (614)
198 PF13504 LRR_7: Leucine rich r 90.4 0.18 3.9E-06 26.6 1.4 17 465-482 1-17 (17)
199 PRK14965 DNA polymerase III su 90.2 0.74 1.6E-05 51.2 7.3 36 76-111 16-52 (576)
200 CHL00181 cbbX CbbX; Provisiona 90.2 1.2 2.5E-05 44.9 8.1 35 77-111 24-73 (287)
201 PF13306 LRR_5: Leucine rich r 90.2 0.61 1.3E-05 40.3 5.4 97 390-493 30-129 (129)
202 PRK14953 DNA polymerase III su 90.1 1.1 2.3E-05 48.8 8.2 36 76-111 16-52 (486)
203 TIGR02880 cbbX_cfxQ probable R 89.7 1.2 2.6E-05 44.8 7.8 35 77-111 23-72 (284)
204 TIGR00602 rad24 checkpoint pro 89.6 0.26 5.6E-06 54.8 3.2 36 76-111 84-124 (637)
205 PLN00020 ribulose bisphosphate 89.5 0.35 7.7E-06 49.4 3.7 16 96-111 147-162 (413)
206 PRK05563 DNA polymerase III su 89.3 1.6 3.4E-05 48.4 8.9 36 76-111 16-52 (559)
207 COG0470 HolB ATPase involved i 88.8 0.86 1.9E-05 46.8 6.2 34 78-111 3-38 (325)
208 PRK05642 DNA replication initi 88.7 0.3 6.5E-06 47.6 2.6 14 98-111 46-59 (234)
209 PRK04301 radA DNA repair and r 88.7 2.3 4.9E-05 43.6 9.1 45 96-141 101-161 (317)
210 PRK07133 DNA polymerase III su 88.6 1.3 2.7E-05 50.0 7.6 36 76-111 18-54 (725)
211 CHL00176 ftsH cell division pr 88.5 1.9 4.1E-05 48.4 8.9 36 76-111 183-230 (638)
212 PTZ00454 26S protease regulato 88.4 1.5 3.2E-05 46.3 7.6 34 78-111 147-193 (398)
213 TIGR01069 mutS2 MutS2 family p 88.4 2.9 6.2E-05 48.2 10.5 99 165-271 401-522 (771)
214 cd01123 Rad51_DMC1_radA Rad51_ 88.3 1.3 2.9E-05 43.0 6.9 40 96-135 18-73 (235)
215 PRK09183 transposase/IS protei 88.1 0.53 1.1E-05 46.6 3.9 15 97-111 102-116 (259)
216 COG0542 clpA ATP-binding subun 88.1 1.5 3.2E-05 49.5 7.7 36 76-111 170-205 (786)
217 KOG2170 ATPase of the AAA+ sup 88.0 1 2.2E-05 44.4 5.5 34 78-111 84-124 (344)
218 PLN03186 DNA repair protein RA 87.9 4.3 9.3E-05 41.8 10.4 47 96-143 122-184 (342)
219 COG0542 clpA ATP-binding subun 87.9 0.81 1.8E-05 51.6 5.5 106 76-189 491-618 (786)
220 TIGR01241 FtsH_fam ATP-depende 87.8 2.4 5.2E-05 46.4 9.2 36 76-111 55-102 (495)
221 PRK07261 topology modulation p 87.8 0.84 1.8E-05 42.0 4.8 27 150-178 43-69 (171)
222 PRK04296 thymidine kinase; Pro 87.8 0.24 5.3E-06 46.5 1.2 104 98-206 3-118 (190)
223 TIGR03689 pup_AAA proteasome A 87.7 0.98 2.1E-05 48.9 5.9 36 76-111 182-230 (512)
224 PRK11034 clpA ATP-dependent Cl 87.6 0.92 2E-05 51.9 5.9 36 76-111 458-502 (758)
225 COG1373 Predicted ATPase (AAA+ 87.4 0.71 1.5E-05 48.8 4.5 41 166-207 94-134 (398)
226 PRK00409 recombination and DNA 87.4 5.7 0.00012 46.0 12.1 103 165-271 406-527 (782)
227 CHL00095 clpC Clp protease ATP 87.3 1.6 3.6E-05 50.9 7.9 36 76-111 509-553 (821)
228 smart00370 LRR Leucine-rich re 87.2 0.52 1.1E-05 27.9 2.0 22 464-486 1-22 (26)
229 smart00369 LRR_TYP Leucine-ric 87.2 0.52 1.1E-05 27.9 2.0 22 464-486 1-22 (26)
230 PRK10865 protein disaggregatio 87.1 1.5 3.2E-05 51.3 7.3 36 76-111 568-612 (857)
231 TIGR02239 recomb_RAD51 DNA rep 87.0 3.9 8.4E-05 41.8 9.5 46 96-142 95-156 (316)
232 PRK07399 DNA polymerase III su 87.0 5.2 0.00011 40.8 10.4 36 76-111 4-40 (314)
233 PRK08118 topology modulation p 86.9 0.22 4.9E-06 45.6 0.4 14 98-111 2-15 (167)
234 PRK09354 recA recombinase A; P 86.9 1.3 2.7E-05 45.6 5.8 77 96-177 59-149 (349)
235 PRK06835 DNA replication prote 86.8 0.76 1.6E-05 47.1 4.2 15 97-111 183-197 (329)
236 cd00561 CobA_CobO_BtuR ATP:cor 86.8 0.62 1.3E-05 42.0 3.2 47 158-204 86-138 (159)
237 PRK07952 DNA replication prote 86.5 5.4 0.00012 38.9 9.8 78 85-178 85-174 (244)
238 cd01394 radB RadB. The archaea 86.5 3.2 6.9E-05 39.8 8.3 33 96-128 18-60 (218)
239 cd00983 recA RecA is a bacter 86.5 1.2 2.7E-05 45.2 5.5 76 96-176 54-143 (325)
240 PRK00771 signal recognition pa 86.1 3.6 7.8E-05 43.9 9.0 78 96-176 94-185 (437)
241 COG0466 Lon ATP-dependent Lon 85.9 1.2 2.6E-05 49.1 5.3 36 76-111 323-364 (782)
242 TIGR02012 tigrfam_recA protein 85.8 1.4 3E-05 44.8 5.4 77 96-177 54-144 (321)
243 PRK06921 hypothetical protein; 85.8 0.88 1.9E-05 45.2 4.0 16 96-111 116-131 (266)
244 KOG0741 AAA+-type ATPase [Post 85.6 7.2 0.00016 41.7 10.5 97 96-213 537-660 (744)
245 KOG0473 Leucine-rich repeat pr 85.5 0.043 9.2E-07 51.5 -5.0 81 415-498 39-119 (326)
246 COG1484 DnaC DNA replication p 85.2 1.8 3.9E-05 42.6 5.8 32 80-111 87-119 (254)
247 PRK08769 DNA polymerase III su 85.2 6.6 0.00014 40.0 10.0 29 83-111 11-40 (319)
248 COG2842 Uncharacterized ATPase 85.1 2.2 4.9E-05 42.1 6.2 78 97-178 94-177 (297)
249 cd03115 SRP The signal recogni 84.7 2.5 5.4E-05 38.8 6.3 13 99-111 2-14 (173)
250 PF03969 AFG1_ATPase: AFG1-lik 84.5 0.48 1.1E-05 49.1 1.5 76 96-177 61-138 (362)
251 COG1222 RPT1 ATP-dependent 26S 84.4 3 6.5E-05 42.3 6.8 32 80-111 155-199 (406)
252 PRK10463 hydrogenase nickel in 84.2 2.7 5.9E-05 41.9 6.6 24 88-111 95-118 (290)
253 KOG3864 Uncharacterized conser 84.0 0.19 4E-06 46.5 -1.5 37 577-613 149-187 (221)
254 PRK14086 dnaA chromosomal repl 83.7 2.9 6.4E-05 46.2 7.1 14 98-111 315-328 (617)
255 PF01695 IstB_IS21: IstB-like 83.3 0.58 1.3E-05 43.3 1.4 16 96-111 46-61 (178)
256 KOG0734 AAA+-type ATPase conta 83.3 2.5 5.4E-05 45.0 6.0 81 77-177 305-407 (752)
257 PRK06696 uridine kinase; Valid 83.2 1.1 2.3E-05 43.4 3.2 32 80-111 2-36 (223)
258 TIGR03499 FlhF flagellar biosy 83.1 4.7 0.0001 40.4 8.0 16 96-111 193-208 (282)
259 KOG0744 AAA+-type ATPase [Post 83.1 4.2 9.1E-05 40.6 7.2 69 97-177 177-261 (423)
260 PF13207 AAA_17: AAA domain; P 83.1 0.5 1.1E-05 40.4 0.8 13 99-111 1-13 (121)
261 TIGR01243 CDC48 AAA family ATP 83.0 3 6.5E-05 48.2 7.3 34 78-111 180-226 (733)
262 cd01120 RecA-like_NTPases RecA 83.0 4.4 9.6E-05 36.3 7.2 30 99-128 1-40 (165)
263 KOG3864 Uncharacterized conser 83.0 0.31 6.7E-06 45.1 -0.5 37 464-500 150-186 (221)
264 PRK15455 PrkA family serine pr 83.0 1.2 2.6E-05 48.4 3.7 36 76-111 76-117 (644)
265 PRK08972 fliI flagellum-specif 82.5 2.3 5E-05 45.0 5.5 82 96-177 161-263 (444)
266 TIGR03877 thermo_KaiC_1 KaiC d 82.5 5.2 0.00011 39.0 7.8 39 96-136 20-68 (237)
267 PRK10867 signal recognition pa 82.3 4.3 9.3E-05 43.2 7.5 16 96-111 99-114 (433)
268 TIGR00959 ffh signal recogniti 82.2 4.7 0.0001 42.9 7.8 15 97-111 99-113 (428)
269 TIGR02236 recomb_radA DNA repa 82.2 5.2 0.00011 40.8 8.0 45 96-141 94-154 (310)
270 PTZ00035 Rad51 protein; Provis 81.9 11 0.00024 38.9 10.2 80 96-176 117-223 (337)
271 PF00154 RecA: recA bacterial 81.5 8 0.00017 39.3 8.8 77 96-177 52-142 (322)
272 TIGR02858 spore_III_AA stage I 81.3 5.6 0.00012 39.5 7.5 116 86-208 99-233 (270)
273 PRK05707 DNA polymerase III su 80.9 5.9 0.00013 40.7 7.8 84 166-249 106-203 (328)
274 KOG2859 DNA repair protein, me 80.8 6.2 0.00013 37.0 6.9 79 97-175 38-136 (293)
275 COG0396 sufC Cysteine desulfur 80.7 7.3 0.00016 37.1 7.5 81 156-239 152-239 (251)
276 smart00364 LRR_BAC Leucine-ric 80.6 1 2.2E-05 26.7 1.2 18 442-459 2-19 (26)
277 cd01133 F1-ATPase_beta F1 ATP 80.6 3.7 8.1E-05 40.6 6.0 81 96-177 68-174 (274)
278 PRK08058 DNA polymerase III su 80.3 5.1 0.00011 41.2 7.2 35 77-111 6-42 (329)
279 PF02562 PhoH: PhoH-like prote 80.3 2.7 5.9E-05 39.7 4.7 118 81-206 5-158 (205)
280 KOG0743 AAA+-type ATPase [Post 80.2 14 0.0003 38.9 10.1 60 99-178 237-298 (457)
281 KOG0729 26S proteasome regulat 79.9 15 0.00032 35.7 9.3 32 80-111 181-225 (435)
282 cd01131 PilT Pilus retraction 79.7 1.2 2.5E-05 42.2 2.1 50 154-206 62-111 (198)
283 COG2019 AdkA Archaeal adenylat 79.6 1.1 2.3E-05 40.2 1.6 15 97-111 4-18 (189)
284 PRK08939 primosomal protein Dn 79.5 8.2 0.00018 39.2 8.2 79 80-177 135-228 (306)
285 COG0468 RecA RecA/RadA recombi 79.4 9.2 0.0002 38.0 8.3 81 96-177 59-152 (279)
286 KOG0735 AAA+-type ATPase [Post 79.2 3.4 7.3E-05 45.7 5.5 62 97-177 431-505 (952)
287 PTZ00361 26 proteosome regulat 79.1 2.9 6.4E-05 44.5 5.1 33 79-111 186-231 (438)
288 PF05970 PIF1: PIF1-like helic 79.1 2.3 4.9E-05 44.5 4.2 27 85-111 10-36 (364)
289 PRK14974 cell division protein 79.1 10 0.00022 39.0 8.7 16 96-111 139-154 (336)
290 PRK14722 flhF flagellar biosyn 78.9 7.1 0.00015 40.7 7.6 77 96-177 136-226 (374)
291 PF10443 RNA12: RNA12 protein; 78.8 5.5 0.00012 41.8 6.7 62 81-142 1-72 (431)
292 COG2607 Predicted ATPase (AAA+ 78.8 8.8 0.00019 36.8 7.4 94 76-189 60-165 (287)
293 PF00006 ATP-synt_ab: ATP synt 78.6 3.3 7.1E-05 39.6 4.7 81 97-177 15-116 (215)
294 cd00544 CobU Adenosylcobinamid 78.6 3.8 8.2E-05 37.5 5.0 73 100-176 2-83 (169)
295 PRK09519 recA DNA recombinatio 78.4 4 8.8E-05 46.5 6.1 76 96-176 59-148 (790)
296 COG2884 FtsE Predicted ATPase 78.3 3.2 6.8E-05 38.3 4.2 58 152-210 142-203 (223)
297 smart00534 MUTSac ATPase domai 78.3 3.9 8.4E-05 38.1 5.1 54 156-210 66-128 (185)
298 PRK07667 uridine kinase; Provi 78.0 1.7 3.7E-05 40.8 2.7 27 85-111 3-31 (193)
299 PRK09270 nucleoside triphospha 78.0 2 4.3E-05 41.7 3.2 17 95-111 31-47 (229)
300 COG0593 DnaA ATPase involved i 78.0 11 0.00023 39.6 8.6 24 335-358 349-372 (408)
301 CHL00195 ycf46 Ycf46; Provisio 77.9 6.6 0.00014 42.6 7.4 36 76-111 228-273 (489)
302 PRK06067 flagellar accessory p 77.9 6.7 0.00015 38.0 6.9 78 96-176 24-130 (234)
303 PRK06002 fliI flagellum-specif 77.9 4.3 9.3E-05 43.2 5.8 82 96-177 164-265 (450)
304 PRK08149 ATP synthase SpaL; Va 77.7 6.4 0.00014 41.7 7.0 82 96-177 150-252 (428)
305 COG0237 CoaE Dephospho-CoA kin 77.7 3.9 8.4E-05 38.6 4.9 15 97-111 2-16 (201)
306 cd01121 Sms Sms (bacterial rad 77.6 4.6 9.9E-05 42.2 5.9 75 96-176 81-168 (372)
307 PF06309 Torsin: Torsin; Inte 77.4 2.7 5.9E-05 36.1 3.4 35 77-111 26-67 (127)
308 PRK12597 F0F1 ATP synthase sub 77.3 3.8 8.2E-05 43.8 5.2 82 96-177 142-248 (461)
309 PF12775 AAA_7: P-loop contain 77.1 2.1 4.6E-05 42.6 3.2 26 85-111 22-47 (272)
310 cd01132 F1_ATPase_alpha F1 ATP 77.1 12 0.00027 36.9 8.4 82 96-178 68-173 (274)
311 PRK06547 hypothetical protein; 77.1 2 4.3E-05 39.5 2.7 24 88-111 6-29 (172)
312 COG1618 Predicted nucleotide k 76.9 1.7 3.7E-05 38.8 2.1 14 98-111 6-19 (179)
313 COG1121 ZnuC ABC-type Mn/Zn tr 76.8 4.5 9.8E-05 39.4 5.1 58 158-218 149-212 (254)
314 cd03284 ABC_MutS1 MutS1 homolo 76.7 16 0.00034 35.0 9.0 14 98-111 31-44 (216)
315 TIGR00064 ftsY signal recognit 76.7 9.2 0.0002 38.1 7.6 81 96-177 71-165 (272)
316 PRK04328 hypothetical protein; 76.7 7.4 0.00016 38.2 6.9 31 96-126 22-62 (249)
317 PRK13236 nitrogenase reductase 76.6 1.2 2.6E-05 45.1 1.2 18 94-111 3-20 (296)
318 KOG0736 Peroxisome assembly fa 76.5 22 0.00048 40.0 10.7 86 76-177 672-775 (953)
319 PRK07594 type III secretion sy 76.5 12 0.00027 39.7 8.7 82 95-177 153-256 (433)
320 PRK10787 DNA-binding ATP-depen 76.4 8.6 0.00019 44.5 8.2 36 76-111 322-363 (784)
321 PF13086 AAA_11: AAA domain; P 76.4 2.7 5.8E-05 40.5 3.7 25 85-111 7-31 (236)
322 TIGR00763 lon ATP-dependent pr 76.4 5.9 0.00013 46.0 6.9 36 76-111 320-361 (775)
323 TIGR03498 FliI_clade3 flagella 76.2 3.9 8.5E-05 43.2 5.0 82 96-177 139-241 (418)
324 PRK14088 dnaA chromosomal repl 76.2 4.1 8.9E-05 43.7 5.2 64 97-177 130-205 (440)
325 PF13481 AAA_25: AAA domain; P 76.0 5.8 0.00013 37.0 5.7 14 98-111 33-46 (193)
326 KOG1532 GTPase XAB1, interacts 75.9 1.7 3.7E-05 42.1 2.0 111 96-219 18-156 (366)
327 cd03221 ABCF_EF-3 ABCF_EF-3 E 75.7 9.1 0.0002 33.9 6.6 16 96-111 25-40 (144)
328 KOG1051 Chaperone HSP104 and r 75.4 6.7 0.00014 45.2 6.7 94 76-178 562-672 (898)
329 KOG0066 eIF2-interacting prote 75.4 6.4 0.00014 40.9 5.9 79 159-240 715-798 (807)
330 PRK12422 chromosomal replicati 75.3 3.3 7.1E-05 44.5 4.2 24 335-358 381-404 (445)
331 KOG0651 26S proteasome regulat 75.3 4.2 9.1E-05 40.4 4.4 15 97-111 166-180 (388)
332 cd03216 ABC_Carb_Monos_I This 75.2 2.7 6E-05 38.2 3.1 107 96-208 25-146 (163)
333 KOG0652 26S proteasome regulat 75.1 9.4 0.0002 36.8 6.6 33 79-111 174-219 (424)
334 KOG1969 DNA replication checkp 74.8 5.5 0.00012 44.2 5.6 66 96-178 325-399 (877)
335 PRK05541 adenylylsulfate kinas 74.7 3.6 7.9E-05 37.9 3.9 16 96-111 6-21 (176)
336 PTZ00494 tuzin-like protein; P 74.6 57 0.0012 34.7 12.4 65 76-143 371-445 (664)
337 COG0467 RAD55 RecA-superfamily 74.0 4.2 9.1E-05 40.3 4.3 41 96-138 22-72 (260)
338 PRK05922 type III secretion sy 73.9 5.1 0.00011 42.5 5.1 83 96-178 156-259 (434)
339 TIGR03305 alt_F1F0_F1_bet alte 73.8 5.4 0.00012 42.4 5.3 83 96-178 137-244 (449)
340 cd03228 ABCC_MRP_Like The MRP 73.8 5.8 0.00012 36.4 5.0 51 159-209 107-160 (171)
341 cd01135 V_A-ATPase_B V/A-type 73.7 6.4 0.00014 38.9 5.4 83 96-178 68-178 (276)
342 PRK12723 flagellar biosynthesi 73.5 12 0.00025 39.4 7.6 77 96-177 173-265 (388)
343 cd03247 ABCC_cytochrome_bd The 73.5 6.2 0.00013 36.4 5.1 59 158-218 108-169 (178)
344 TIGR00362 DnaA chromosomal rep 73.5 4.9 0.00011 42.7 5.0 15 97-111 136-150 (405)
345 PRK08927 fliI flagellum-specif 73.5 5 0.00011 42.6 4.9 82 96-177 157-259 (442)
346 cd03214 ABC_Iron-Siderophores_ 73.4 11 0.00023 34.9 6.7 112 96-208 24-162 (180)
347 cd03285 ABC_MSH2_euk MutS2 hom 73.0 9.7 0.00021 36.6 6.5 90 164-255 107-219 (222)
348 PF13245 AAA_19: Part of AAA d 73.0 2.3 4.9E-05 33.1 1.7 16 96-111 9-24 (76)
349 COG1136 SalX ABC-type antimicr 72.8 4.2 9.1E-05 38.9 3.7 52 157-210 151-209 (226)
350 cd01136 ATPase_flagellum-secre 72.6 10 0.00022 38.7 6.7 82 96-177 68-170 (326)
351 cd02117 NifH_like This family 72.5 1.6 3.4E-05 41.8 0.9 14 98-111 1-14 (212)
352 PRK11889 flhF flagellar biosyn 72.5 11 0.00023 39.5 6.8 16 96-111 240-255 (436)
353 TIGR01287 nifH nitrogenase iro 72.4 1.5 3.3E-05 43.8 0.8 14 98-111 1-14 (275)
354 PF13479 AAA_24: AAA domain 72.3 9.6 0.00021 36.4 6.2 29 98-126 4-34 (213)
355 COG3267 ExeA Type II secretory 72.2 24 0.00052 34.3 8.6 84 95-178 49-143 (269)
356 CHL00059 atpA ATP synthase CF1 71.7 5.4 0.00012 42.8 4.6 83 96-178 140-245 (485)
357 PRK05986 cob(I)alamin adenolsy 71.6 4.5 9.7E-05 37.6 3.6 49 156-204 104-158 (191)
358 COG1936 Predicted nucleotide k 71.4 2 4.3E-05 38.9 1.2 13 99-111 2-14 (180)
359 PRK09280 F0F1 ATP synthase sub 71.3 18 0.00038 38.8 8.3 82 96-177 143-249 (463)
360 PRK06936 type III secretion sy 71.3 6.8 0.00015 41.6 5.3 82 96-177 161-263 (439)
361 cd03287 ABC_MSH3_euk MutS3 hom 71.2 4.1 9E-05 39.2 3.4 45 165-210 109-160 (222)
362 COG1643 HrpA HrpA-like helicas 71.1 8.3 0.00018 44.5 6.2 123 82-206 52-207 (845)
363 PRK09099 type III secretion sy 70.6 9.6 0.00021 40.6 6.2 83 96-178 162-265 (441)
364 PRK13765 ATP-dependent proteas 70.6 5 0.00011 45.0 4.3 64 75-141 30-104 (637)
365 TIGR00764 lon_rel lon-related 70.3 7.1 0.00015 43.8 5.5 66 73-141 15-91 (608)
366 PRK00149 dnaA chromosomal repl 70.3 4.3 9.4E-05 43.8 3.7 15 97-111 148-162 (450)
367 KOG0924 mRNA splicing factor A 70.2 9.3 0.0002 42.0 5.9 110 96-206 370-512 (1042)
368 cd00046 DEXDc DEAD-like helica 70.2 6 0.00013 34.0 4.1 13 99-111 2-14 (144)
369 PRK04040 adenylate kinase; Pro 70.0 2.2 4.7E-05 39.9 1.2 14 98-111 3-16 (188)
370 PRK13232 nifH nitrogenase redu 69.9 2 4.2E-05 43.0 0.9 14 98-111 2-15 (273)
371 TIGR01243 CDC48 AAA family ATP 69.9 15 0.00033 42.4 8.3 36 76-111 453-501 (733)
372 PRK07196 fliI flagellum-specif 69.8 15 0.00033 39.1 7.4 84 95-178 153-257 (434)
373 cd03281 ABC_MSH5_euk MutS5 hom 69.8 2.5 5.4E-05 40.4 1.6 47 164-210 106-160 (213)
374 smart00487 DEXDc DEAD-like hel 69.6 10 0.00022 35.0 5.7 24 87-111 15-38 (201)
375 PRK12727 flagellar biosynthesi 69.5 21 0.00045 39.0 8.4 16 96-111 349-364 (559)
376 TIGR03881 KaiC_arch_4 KaiC dom 69.4 21 0.00045 34.4 8.0 31 96-126 19-59 (229)
377 TIGR00073 hypB hydrogenase acc 69.4 3 6.5E-05 39.7 2.0 22 90-111 15-36 (207)
378 PRK05800 cobU adenosylcobinami 69.4 8.7 0.00019 35.2 5.0 76 99-176 3-86 (170)
379 TIGR01967 DEAH_box_HrpA ATP-de 69.3 11 0.00023 45.8 6.9 59 82-142 69-137 (1283)
380 PF13604 AAA_30: AAA domain; P 69.3 4.1 8.8E-05 38.4 2.9 26 86-111 7-32 (196)
381 PRK12724 flagellar biosynthesi 69.0 14 0.00031 38.9 7.0 15 97-111 223-237 (432)
382 PRK13230 nitrogenase reductase 69.0 2.2 4.7E-05 42.8 1.0 14 98-111 2-15 (279)
383 COG0541 Ffh Signal recognition 68.8 35 0.00077 35.9 9.6 47 96-143 99-157 (451)
384 TIGR02030 BchI-ChlI magnesium 68.8 4.2 9.1E-05 41.8 3.0 36 76-111 4-39 (337)
385 PRK15429 formate hydrogenlyase 68.7 5 0.00011 46.0 4.0 36 76-111 376-413 (686)
386 PRK13531 regulatory ATPase Rav 68.7 3.4 7.5E-05 44.2 2.4 34 76-111 20-53 (498)
387 COG0003 ArsA Predicted ATPase 68.6 4.4 9.6E-05 41.2 3.1 39 97-135 2-50 (322)
388 COG0572 Udk Uridine kinase [Nu 68.4 3.6 7.8E-05 39.0 2.3 72 96-168 7-86 (218)
389 COG1703 ArgK Putative periplas 68.2 4.5 9.8E-05 40.1 2.9 48 86-133 38-99 (323)
390 PRK06793 fliI flagellum-specif 68.1 11 0.00023 40.1 5.9 114 96-211 155-293 (432)
391 PRK05688 fliI flagellum-specif 68.0 13 0.00028 39.7 6.5 83 96-178 167-270 (451)
392 COG3640 CooC CO dehydrogenase 68.0 5 0.00011 38.3 3.1 13 99-111 2-14 (255)
393 COG1875 NYN ribonuclease and A 67.9 5 0.00011 40.9 3.2 32 80-111 228-259 (436)
394 PF06745 KaiC: KaiC; InterPro 67.9 3.2 6.9E-05 40.1 1.9 78 96-176 18-125 (226)
395 PTZ00185 ATPase alpha subunit; 67.8 23 0.0005 38.3 8.2 81 96-177 188-300 (574)
396 PRK12726 flagellar biosynthesi 67.8 19 0.0004 37.6 7.4 79 96-177 205-296 (407)
397 smart00365 LRR_SD22 Leucine-ri 67.6 4.1 8.9E-05 24.2 1.6 16 442-457 2-17 (26)
398 COG4608 AppF ABC-type oligopep 67.5 19 0.00042 35.3 7.1 116 96-212 38-178 (268)
399 PRK11823 DNA repair protein Ra 67.4 10 0.00022 40.8 5.8 85 86-176 67-166 (446)
400 PRK08233 hypothetical protein; 67.4 2.7 5.9E-05 38.8 1.3 15 97-111 3-17 (182)
401 PF03308 ArgK: ArgK protein; 67.3 4.7 0.0001 39.3 2.8 28 84-111 14-43 (266)
402 TIGR01360 aden_kin_iso1 adenyl 66.9 2.9 6.4E-05 38.8 1.4 16 96-111 2-17 (188)
403 PRK13235 nifH nitrogenase redu 66.8 2.4 5.3E-05 42.3 0.9 14 98-111 2-15 (274)
404 PF13238 AAA_18: AAA domain; P 66.8 2.3 4.9E-05 36.5 0.6 12 100-111 1-12 (129)
405 TIGR01040 V-ATPase_V1_B V-type 66.7 11 0.00024 40.2 5.6 82 96-177 140-258 (466)
406 COG2401 ABC-type ATPase fused 66.7 4.1 8.9E-05 42.2 2.4 63 154-216 513-580 (593)
407 TIGR03324 alt_F1F0_F1_al alter 66.4 10 0.00022 40.9 5.4 82 96-177 161-265 (497)
408 cd02019 NK Nucleoside/nucleoti 66.2 2.3 5.1E-05 32.2 0.5 13 99-111 1-13 (69)
409 cd01122 GP4d_helicase GP4d_hel 66.2 19 0.00041 35.7 7.2 41 97-139 30-81 (271)
410 TIGR01041 ATP_syn_B_arch ATP s 66.2 11 0.00024 40.3 5.7 83 96-178 140-250 (458)
411 TIGR01425 SRP54_euk signal rec 66.1 18 0.00038 38.5 7.1 16 96-111 99-114 (429)
412 TIGR00708 cobA cob(I)alamin ad 66.1 15 0.00033 33.6 5.8 49 156-204 86-140 (173)
413 PRK05703 flhF flagellar biosyn 65.9 15 0.00034 39.1 6.7 75 97-176 221-309 (424)
414 PRK05342 clpX ATP-dependent pr 65.9 14 0.0003 39.2 6.3 36 76-111 71-122 (412)
415 PRK09281 F0F1 ATP synthase sub 65.9 23 0.00049 38.6 8.0 83 96-178 161-266 (502)
416 TIGR01039 atpD ATP synthase, F 65.9 13 0.00028 39.8 5.9 83 96-178 142-249 (461)
417 PRK13343 F0F1 ATP synthase sub 65.8 25 0.00055 38.1 8.2 83 96-178 161-266 (502)
418 PRK07721 fliI flagellum-specif 65.7 14 0.0003 39.5 6.3 17 95-111 156-172 (438)
419 TIGR02546 III_secr_ATP type II 65.6 16 0.00035 38.9 6.7 83 95-177 143-246 (422)
420 PRK00625 shikimate kinase; Pro 65.5 2.6 5.7E-05 38.7 0.7 13 99-111 2-14 (173)
421 PF00485 PRK: Phosphoribulokin 65.4 2.7 5.8E-05 39.5 0.8 13 99-111 1-13 (194)
422 COG1223 Predicted ATPase (AAA+ 65.3 12 0.00026 36.3 5.0 36 76-111 121-165 (368)
423 PRK14723 flhF flagellar biosyn 65.3 21 0.00046 40.7 7.9 75 97-176 185-273 (767)
424 TIGR02016 BchX chlorophyllide 65.2 2.8 6.1E-05 42.4 0.9 14 98-111 1-14 (296)
425 PRK05480 uridine/cytidine kina 65.0 3.4 7.3E-05 39.3 1.4 17 95-111 4-20 (209)
426 PRK14087 dnaA chromosomal repl 65.0 9.3 0.0002 41.2 4.9 92 98-203 142-248 (450)
427 KOG0733 Nuclear AAA ATPase (VC 64.9 26 0.00055 38.5 7.8 66 97-177 545-615 (802)
428 PF13671 AAA_33: AAA domain; P 64.7 2.9 6.2E-05 36.8 0.8 13 99-111 1-13 (143)
429 PRK13233 nifH nitrogenase redu 64.4 3.3 7.1E-05 41.4 1.3 14 98-111 3-16 (275)
430 PF12780 AAA_8: P-loop contain 64.4 9.2 0.0002 37.9 4.4 32 79-111 11-45 (268)
431 PRK06762 hypothetical protein; 64.3 3.3 7.2E-05 37.7 1.2 14 98-111 3-16 (166)
432 TIGR03878 thermo_KaiC_2 KaiC d 64.2 8.1 0.00018 38.2 4.0 31 96-126 35-75 (259)
433 TIGR02902 spore_lonB ATP-depen 64.1 6.3 0.00014 43.5 3.5 36 76-111 65-100 (531)
434 cd03282 ABC_MSH4_euk MutS4 hom 63.8 19 0.00041 34.1 6.2 45 165-211 107-158 (204)
435 cd03243 ABC_MutS_homologs The 63.7 7.4 0.00016 36.8 3.5 45 165-211 107-158 (202)
436 PF14532 Sigma54_activ_2: Sigm 63.2 5.9 0.00013 34.8 2.6 33 79-111 1-35 (138)
437 TIGR00235 udk uridine kinase. 63.1 3.7 8E-05 39.0 1.3 16 96-111 5-20 (207)
438 cd02040 NifH NifH gene encodes 63.1 3.3 7.1E-05 41.2 1.0 14 98-111 2-15 (270)
439 PF08298 AAA_PrkA: PrkA AAA do 62.9 8 0.00017 39.5 3.7 36 76-111 61-102 (358)
440 COG1120 FepC ABC-type cobalami 62.8 17 0.00036 35.7 5.7 84 132-218 118-212 (258)
441 TIGR00962 atpA proton transloc 62.6 35 0.00077 37.1 8.7 83 96-178 160-265 (501)
442 PF10923 DUF2791: P-loop Domai 62.6 38 0.00082 35.8 8.6 65 78-143 27-112 (416)
443 COG5635 Predicted NTPase (NACH 62.5 5.6 0.00012 46.5 2.9 46 160-206 299-350 (824)
444 PHA02774 E1; Provisional 62.4 5.5 0.00012 43.5 2.5 28 84-111 420-448 (613)
445 COG1419 FlhF Flagellar GTP-bin 62.3 6.4 0.00014 40.9 2.9 15 97-111 203-217 (407)
446 PRK07960 fliI flagellum-specif 62.3 11 0.00025 40.0 4.8 82 96-177 174-276 (455)
447 PRK06820 type III secretion sy 62.3 12 0.00026 39.9 5.0 82 96-177 162-264 (440)
448 cd03223 ABCD_peroxisomal_ALDP 62.2 16 0.00034 33.3 5.2 16 96-111 26-41 (166)
449 PRK00279 adk adenylate kinase; 62.1 16 0.00035 34.9 5.5 13 99-111 2-14 (215)
450 cd03227 ABC_Class2 ABC-type Cl 62.1 13 0.00028 33.7 4.6 44 166-209 99-146 (162)
451 PRK03839 putative kinase; Prov 61.7 3.6 7.9E-05 38.0 1.0 13 99-111 2-14 (180)
452 cd01858 NGP_1 NGP-1. Autoanti 61.7 8.1 0.00018 34.7 3.2 33 79-111 81-116 (157)
453 PF00910 RNA_helicase: RNA hel 61.3 3.1 6.7E-05 34.8 0.3 61 100-178 1-61 (107)
454 PRK04196 V-type ATP synthase s 61.1 17 0.00037 39.1 5.9 82 96-178 142-252 (460)
455 TIGR01359 UMP_CMP_kin_fam UMP- 60.9 3.4 7.3E-05 38.3 0.6 13 99-111 1-13 (183)
456 cd03286 ABC_MSH6_euk MutS6 hom 60.8 8.7 0.00019 36.8 3.4 53 158-211 99-160 (218)
457 COG2894 MinD Septum formation 60.7 26 0.00057 33.2 6.2 14 98-111 3-17 (272)
458 TIGR00416 sms DNA repair prote 60.6 16 0.00035 39.4 5.7 86 86-177 81-181 (454)
459 cd02032 Bchl_like This family 60.5 3.8 8.2E-05 40.7 0.9 13 99-111 2-14 (267)
460 CHL00060 atpB ATP synthase CF1 60.3 21 0.00046 38.5 6.4 83 96-178 160-274 (494)
461 KOG0922 DEAH-box RNA helicase 60.3 29 0.00063 38.3 7.4 123 82-206 53-207 (674)
462 TIGR00382 clpX endopeptidase C 60.3 19 0.0004 38.2 6.0 36 76-111 77-130 (413)
463 PRK06090 DNA polymerase III su 60.2 38 0.00082 34.6 8.0 28 84-111 11-39 (319)
464 TIGR03496 FliI_clade1 flagella 59.9 34 0.00075 36.2 7.9 82 96-177 136-238 (411)
465 TIGR01281 DPOR_bchL light-inde 59.6 4 8.7E-05 40.6 0.9 13 99-111 2-14 (268)
466 COG1348 NifH Nitrogenase subun 59.4 5.8 0.00012 37.8 1.8 14 98-111 2-15 (278)
467 TIGR01026 fliI_yscN ATPase Fli 59.3 19 0.00042 38.5 5.9 82 96-177 162-264 (440)
468 PTZ00301 uridine kinase; Provi 59.2 4.8 0.0001 38.4 1.3 15 97-111 3-17 (210)
469 KOG2825 Putative arsenite-tran 59.0 18 0.00038 35.0 4.9 25 87-111 9-33 (323)
470 PRK13234 nifH nitrogenase redu 58.9 4.6 9.9E-05 40.9 1.2 16 96-111 3-18 (295)
471 COG3910 Predicted ATPase [Gene 58.9 16 0.00035 33.8 4.4 62 153-218 134-201 (233)
472 TIGR03497 FliI_clade2 flagella 58.9 20 0.00043 38.0 5.9 82 95-177 135-238 (413)
473 TIGR00554 panK_bact pantothena 58.8 6.3 0.00014 39.5 2.1 17 95-111 60-76 (290)
474 PF00142 Fer4_NifH: 4Fe-4S iro 58.7 4.4 9.5E-05 39.6 0.9 14 98-111 1-14 (273)
475 PRK12678 transcription termina 58.6 8.6 0.00019 42.0 3.1 80 96-177 415-514 (672)
476 cd03222 ABC_RNaseL_inhibitor T 58.4 19 0.00041 33.2 5.1 16 96-111 24-39 (177)
477 cd02023 UMPK Uridine monophosp 58.2 3.8 8.3E-05 38.6 0.5 13 99-111 1-13 (198)
478 COG0055 AtpD F0F1-type ATP syn 58.2 23 0.00049 36.4 5.8 83 96-178 146-253 (468)
479 PRK13407 bchI magnesium chelat 58.2 7 0.00015 40.1 2.4 36 76-111 8-43 (334)
480 COG4128 Zot Zonula occludens t 57.9 18 0.00038 35.8 4.8 31 167-197 55-85 (398)
481 COG3598 RepA RecA-family ATPas 57.9 22 0.00047 35.8 5.5 46 99-144 91-157 (402)
482 PRK06995 flhF flagellar biosyn 57.8 28 0.00061 37.6 6.9 15 97-111 256-270 (484)
483 TIGR02322 phosphon_PhnN phosph 57.8 4.7 0.0001 37.2 1.0 14 98-111 2-15 (179)
484 COG0411 LivG ABC-type branched 57.6 24 0.00052 34.1 5.6 23 154-176 155-177 (250)
485 PRK00652 lpxK tetraacyldisacch 57.2 16 0.00035 37.3 4.8 15 97-111 49-65 (325)
486 PF02374 ArsA_ATPase: Anion-tr 57.2 4.5 9.8E-05 41.1 0.8 14 98-111 2-15 (305)
487 PF00158 Sigma54_activat: Sigm 57.2 20 0.00043 32.8 5.0 34 78-111 1-36 (168)
488 PRK06964 DNA polymerase III su 56.9 47 0.001 34.3 8.1 43 165-207 131-176 (342)
489 PRK13185 chlL protochlorophyll 56.8 5 0.00011 39.9 1.1 14 98-111 3-16 (270)
490 PRK01184 hypothetical protein; 56.6 5.1 0.00011 37.2 1.0 14 98-111 2-15 (184)
491 PRK13947 shikimate kinase; Pro 56.5 4.9 0.00011 36.7 0.9 13 99-111 3-15 (171)
492 PF09848 DUF2075: Uncharacteri 56.5 26 0.00056 36.4 6.3 29 98-126 2-42 (352)
493 PF00025 Arf: ADP-ribosylation 56.3 31 0.00068 31.6 6.2 24 88-111 4-28 (175)
494 PF03193 DUF258: Protein of un 56.3 7.8 0.00017 35.0 2.1 25 84-111 25-49 (161)
495 TIGR00150 HI0065_YjeE ATPase, 56.2 12 0.00026 32.7 3.1 29 83-111 6-36 (133)
496 PRK14721 flhF flagellar biosyn 56.1 42 0.00092 35.6 7.8 16 96-111 190-205 (420)
497 PRK00889 adenylylsulfate kinas 56.0 6.2 0.00013 36.3 1.4 16 96-111 3-18 (175)
498 PRK13231 nitrogenase reductase 55.7 5.4 0.00012 39.6 1.1 15 97-111 2-16 (264)
499 TIGR02655 circ_KaiC circadian 55.5 42 0.0009 36.6 8.0 87 87-176 251-363 (484)
500 PRK10875 recD exonuclease V su 55.3 20 0.00042 40.3 5.4 43 97-139 167-222 (615)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-73 Score=635.56 Aligned_cols=599 Identities=40% Similarity=0.692 Sum_probs=476.9
Q ss_pred ChhHHHHHHHHHHhhHHhh----------------ccccCCCcCCCCchhhchhHHHHHHHHHHHHHHHhcCCCccccc-
Q 039519 1 VEAVETKVGELMRDSSQEV----------------DKLCPGGCCSKNCKSSFEFGKRVAKTLQLVNNLMGEGAFDAVAE- 63 (647)
Q Consensus 1 v~~~~~~~ed~~d~~~~~~----------------~~~~~~~~~~~~~~~r~~~~~~~~~~~~~v~~~~~~~~~~~~~~- 63 (647)
|++++|++||+++.+.++. ++-|+.++|...+..-+.+++++-++.++++.+..++.++.++.
T Consensus 64 ~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~ 143 (889)
T KOG4658|consen 64 VGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGES 143 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccccc
Confidence 4678999999999775553 33466666767777778889999999999999998887776654
Q ss_pred cCCCCCCCCCCCCCc--ccchHHHHHHHHHhhhCCceEEEEEccCccCCC-------------CCCcceEEEEEEcCccC
Q 039519 64 KVPPPAVDQRPCEPT--VGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA-------------PNDFDVVIWMVVSKDLQ 128 (647)
Q Consensus 64 ~~~~~~~~~~~~~~~--vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT-------------~~~F~~~~wv~~s~~~~ 128 (647)
..+......++.... ||.++.++++.+.|.+++..++||+||||+||| +.+|+.++||+||+.|+
T Consensus 144 ~~~~~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~ 223 (889)
T KOG4658|consen 144 LDPREKVETRPIQSESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFT 223 (889)
T ss_pred ccchhhcccCCCCccccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEccccc
Confidence 222222222222222 999999999999999988899999999999999 78999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHhccCCeeEEEecCCCccccccccCCCCCCCCCcEEEEecCchHHhh
Q 039519 129 LEKIQERIGRRIGFLDESWKNGSLEDKASDIFRILSKKKLLLLLDDIWERVDLTKVGVPFPDPENKSRIDFTTRFLEICS 208 (647)
Q Consensus 129 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~ 208 (647)
...++++|+..++..+..+...+.++.+..|.+.|+++||||||||||+..+|+.++.++|...+||+|++|||++.||.
T Consensus 224 ~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~ 303 (889)
T KOG4658|consen 224 TRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCG 303 (889)
T ss_pred HHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhh
Confidence 99999999999988666566666689999999999999999999999999999999999999989999999999999999
Q ss_pred h-cccceeEec-----------------cccccCCCChHHHHHHHHHHhcCCchhHHHHhhHhhcCCCHhHHHHHHHHHh
Q 039519 209 A-MQAHEFLKV-----------------EDVLKNHPNIPELARSVAQECAGLPLALITIGRVMACKKTPQEWHYAIQVLR 270 (647)
Q Consensus 209 ~-~~~~~~~~~-----------------~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l~ 270 (647)
. +++...+++ .......+.++++|++|+++|+|+|||+.++|+.++.+.+..+|+++.+.+.
T Consensus 304 ~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~ 383 (889)
T KOG4658|consen 304 RAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLK 383 (889)
T ss_pred ccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccc
Confidence 8 888777777 1112333558999999999999999999999999999999999999999998
Q ss_pred hc-ccCCCCCCcchhhHHHHhhcCCCchhhhhHHhhhcCCCCCCcccHHHHHHHhhhcCCccccC-ccchHHHHHHHHHH
Q 039519 271 IS-ASEFPGMGKEVYPLLKYSYDSLPDETIRSCLLYCGLFPEDYRTRKSELIDCWIGEGFLDQYD-RSGAYDEGYYIIGI 348 (647)
Q Consensus 271 ~~-~~~~~~~~~~i~~~l~~sy~~L~~~~~k~~fl~~a~fp~~~~i~~~~Li~~w~a~g~~~~~~-~~~~~~~~~~~~~~ 348 (647)
+. ..+.+++.+.|+.++++|||.||+ ++|.||+|||+||+||.|+++.|+.+|+||||+.+.. +..+++.|+.|+++
T Consensus 384 s~~~~~~~~~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~ 462 (889)
T KOG4658|consen 384 SSLAADFSGMEESILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEE 462 (889)
T ss_pred ccccCCCCchhhhhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHH
Confidence 87 555667778999999999999996 9999999999999999999999999999999999855 88999999999999
Q ss_pred HHHhccccccC----CCeeEEe----------eeeccccccceEEecCCCcccCccccccccEEEEEeecccccccccC-
Q 039519 349 LLHACLLEEEW----GDIGEEE----------TCKIEKEKENFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSEL- 413 (647)
Q Consensus 349 L~~~~ll~~~~----~~~~~mh----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~- 413 (647)
|+.++|+.... ..+|+|| +.++...+++.++..+.+....|...++..++++++.+|.+..++..
T Consensus 463 LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~ 542 (889)
T KOG4658|consen 463 LVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS 542 (889)
T ss_pred HHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCC
Confidence 99999999863 3689999 44555556667777766777777777777777777777655432221
Q ss_pred ------------------------CCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccchhcCccCcE
Q 039519 414 ------------------------QPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLVNLKC 469 (647)
Q Consensus 414 ------------------------~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~L~~ 469 (647)
+..++.|++|||++|..+.++|.+|+.|.+|+||+++++.++.+|.++++|..|.+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence 23467899999999988999999999999999999999999999999999999999
Q ss_pred EeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhhHHHHhhh
Q 039519 470 LNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQALQELLIS 549 (647)
Q Consensus 470 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~ 549 (647)
|++..+..+..+|.. ...+++|++|.+..... . .......++.+|.+|+.+..+..+...++.+...
T Consensus 623 Lnl~~~~~l~~~~~i-~~~L~~Lr~L~l~~s~~-~-----------~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~ 689 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGI-LLELQSLRVLRLPRSAL-S-----------NDKLLLKELENLEHLENLSITISSVLLLEDLLGM 689 (889)
T ss_pred eccccccccccccch-hhhcccccEEEeecccc-c-----------cchhhHHhhhcccchhhheeecchhHhHhhhhhh
Confidence 999998776677653 66699999998886441 1 2567778888899999888875554223333222
Q ss_pred hhhhhccceee------------eeccCCCceEEEeccc----------------ccCCccEEEEcCCCCCCCChhhccc
Q 039519 550 QELQRCTQFLF------------LRCFNDSKSLDIFCLA----------------CLHNLNKLYVAGCKHLEDFQMIIQR 601 (647)
Q Consensus 550 ~~~~~~l~~l~------------L~~~~~L~~L~l~~~~----------------~l~~L~~L~L~~~~~~~~~~~~~~l 601 (647)
....+..+.+. +..+.+|++|.+.... .+++|..+.+.+|.....+.|.-..
T Consensus 690 ~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~ 769 (889)
T KOG4658|consen 690 TRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFA 769 (889)
T ss_pred HHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhcc
Confidence 22222222222 2233455555542211 1345555555666656666666667
Q ss_pred cCCceEEeeccc
Q 039519 602 SSLSVHNLFINK 613 (647)
Q Consensus 602 ~~L~~L~L~~~~ 613 (647)
|+|+.|.+..|.
T Consensus 770 ~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 770 PHLTSLSLVSCR 781 (889)
T ss_pred CcccEEEEeccc
Confidence 889999998875
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.2e-55 Score=517.26 Aligned_cols=461 Identities=21% Similarity=0.254 Sum_probs=341.1
Q ss_pred HHhhHHhhccccCCCcCCCCchh-hchhHHHHHHHHHHHHHHHhcC--CCc-------cccccCCC--CCCCCCCCCCcc
Q 039519 12 MRDSSQEVDKLCPGGCCSKNCKS-SFEFGKRVAKTLQLVNNLMGEG--AFD-------AVAEKVPP--PAVDQRPCEPTV 79 (647)
Q Consensus 12 ~d~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~v~~~~~~~--~~~-------~~~~~~~~--~~~~~~~~~~~v 79 (647)
+|+.+++.|++.|+..|.++... ..+..++|++++++|+++.+.. .+. .++..+.. ...+....+.+|
T Consensus 108 v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~v 187 (1153)
T PLN03210 108 LDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFV 187 (1153)
T ss_pred ccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccCccccccc
Confidence 35678888999888776433221 2346799999999999998865 222 11111100 111222336789
Q ss_pred cchHHHHHHHHHhh--hCCceEEEEEccCccCCC----------CCCcceEEEEEE---cCc-----------cC-HHHH
Q 039519 80 GLESTFDKVRRCLR--EEQVGIIGLYGMGGLLGA----------PNDFDVVIWMVV---SKD-----------LQ-LEKI 132 (647)
Q Consensus 80 Gr~~~~~~i~~~L~--~~~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~---s~~-----------~~-~~~~ 132 (647)
||+++++++.++|. .+++++||||||||+||| ..+|++.+|+.. +.. ++ ...+
T Consensus 188 G~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l 267 (1153)
T PLN03210 188 GIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHL 267 (1153)
T ss_pred chHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHH
Confidence 99999999999875 357899999999999999 678998888742 111 11 1235
Q ss_pred HHHHHHHhCCCCcCCCCCCHHHHHHHHHHHhccCCeeEEEecCCCccccccccCCCCCCCCCcEEEEecCchHHhhhccc
Q 039519 133 QERIGRRIGFLDESWKNGSLEDKASDIFRILSKKKLLLLLDDIWERVDLTKVGVPFPDPENKSRIDFTTRFLEICSAMQA 212 (647)
Q Consensus 133 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~~ 212 (647)
++.++.++....+ ..... ...+++.++++|+||||||||+.++|+.+.....+.+.||+||||||+++++..++.
T Consensus 268 ~~~~l~~il~~~~-~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~ 342 (1153)
T PLN03210 268 QRAFLSEILDKKD-IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGI 342 (1153)
T ss_pred HHHHHHHHhCCCC-cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCC
Confidence 5555555432211 11111 246788899999999999999999999998777788899999999999999988877
Q ss_pred ceeEec-------------ccccc---CCCChHHHHHHHHHHhcCCchhHHHHhhHhhcCCCHhHHHHHHHHHhhcccCC
Q 039519 213 HEFLKV-------------EDVLK---NHPNIPELARSVAQECAGLPLALITIGRVMACKKTPQEWHYAIQVLRISASEF 276 (647)
Q Consensus 213 ~~~~~~-------------~~~~~---~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~~~~ 276 (647)
...|.+ ..++. ...++++++++|+++|+|+|||++++|++|++ ++.++|+.+++.++....
T Consensus 343 ~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~~~~-- 419 (1153)
T PLN03210 343 DHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRNGLD-- 419 (1153)
T ss_pred CeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHhCcc--
Confidence 888887 11222 22357889999999999999999999999998 689999999999876443
Q ss_pred CCCCcchhhHHHHhhcCCCchhhhhHHhhhcCCCCCCcccHHHHHHHhhhcCCccccCccchHHHHHHHHHHHHHhcccc
Q 039519 277 PGMGKEVYPLLKYSYDSLPDETIRSCLLYCGLFPEDYRTRKSELIDCWIGEGFLDQYDRSGAYDEGYYIIGILLHACLLE 356 (647)
Q Consensus 277 ~~~~~~i~~~l~~sy~~L~~~~~k~~fl~~a~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~ 356 (647)
..|..++++||+.|+++..|.||+++|+|+.+..++ .+..|++.+.... +..++.|+++||++
T Consensus 420 ----~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~l~~L~~ksLi~ 482 (1153)
T PLN03210 420 ----GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------NIGLKNLVDKSLIH 482 (1153)
T ss_pred ----HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------hhChHHHHhcCCEE
Confidence 389999999999998745899999999999887653 4667777654432 12378899999998
Q ss_pred ccCCCeeEEe------eeec------c-----------------------------------------------------
Q 039519 357 EEWGDIGEEE------TCKI------E----------------------------------------------------- 371 (647)
Q Consensus 357 ~~~~~~~~mh------~~~~------~----------------------------------------------------- 371 (647)
.. .+.++|| +... .
T Consensus 483 ~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~ 561 (1153)
T PLN03210 483 VR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLL 561 (1153)
T ss_pred Ec-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCcccc
Confidence 75 4578888 0000 0
Q ss_pred --------------------------ccccceEEecCCCcccCccccccccEEEEEeecccccccccCCCCcceeeEEec
Q 039519 372 --------------------------KEKENFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNM 425 (647)
Q Consensus 372 --------------------------~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l 425 (647)
..+.+++.+.++.++.+|....+.+|+.|++.+|.+..+|..+..+++|++|++
T Consensus 562 ~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~L 641 (1153)
T PLN03210 562 FLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDL 641 (1153)
T ss_pred EEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEEC
Confidence 001222333344444555555667888888888888888887788889999999
Q ss_pred cCccccccCccccccccCCCeeeecCC-CCCccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccC
Q 039519 426 SNNHLLWKLPLGISTLVSLEHLDLSST-AITHLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCG 501 (647)
Q Consensus 426 ~~~~~~~~lp~~~~~L~~L~~L~L~~~-~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 501 (647)
+++..++.+| .++.+++|++|+|++| .+.++|.+++++++|+.|++++|..+..+|.+ + .+++|+.|++.+|+
T Consensus 642 s~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 642 RGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCS 715 (1153)
T ss_pred CCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCC
Confidence 9876777787 5888999999999987 57799999999999999999998888899985 3 78888888888764
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1e-39 Score=331.51 Aligned_cols=252 Identities=33% Similarity=0.615 Sum_probs=205.6
Q ss_pred chHHHHHHHHHhhh--CCceEEEEEccCccCCC------------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcC
Q 039519 81 LESTFDKVRRCLRE--EQVGIIGLYGMGGLLGA------------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDES 146 (647)
Q Consensus 81 r~~~~~~i~~~L~~--~~~~vi~I~G~gGiGKT------------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 146 (647)
||.++++|.+.|.+ ++.++|+|+||||+||| +.+|+.++|+.+++..+...+++.|+.+++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999998 78999999999999999 78999999999999999999999999999877543
Q ss_pred C-CCCCHHHHHHHHHHHhccCCeeEEEecCCCccccccccCCCCCCCCCcEEEEecCchHHhhhccc-ceeEecc-----
Q 039519 147 W-KNGSLEDKASDIFRILSKKKLLLLLDDIWERVDLTKVGVPFPDPENKSRIDFTTRFLEICSAMQA-HEFLKVE----- 219 (647)
Q Consensus 147 ~-~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~~-~~~~~~~----- 219 (647)
. ...+.++....+++.|+++++||||||||+...|+.+...++....||+||||||+..++..++. ...+++.
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ 160 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEE 160 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HH
T ss_pred cccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3 56688889999999999999999999999999999998888877789999999999999877665 5567771
Q ss_pred --------ccc----cCCCChHHHHHHHHHHhcCCchhHHHHhhHhhcCCCHhHHHHHHHHHhhcccCCCCCCcchhhHH
Q 039519 220 --------DVL----KNHPNIPELARSVAQECAGLPLALITIGRVMACKKTPQEWHYAIQVLRISASEFPGMGKEVYPLL 287 (647)
Q Consensus 220 --------~~~----~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l 287 (647)
.+. ......++.+++|+++|+|+|||++++|++++.+.+..+|+.+++.+.............++.++
T Consensus 161 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l 240 (287)
T PF00931_consen 161 EALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSAL 240 (287)
T ss_dssp HHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 111 12355678999999999999999999999996655789999999888877654443456899999
Q ss_pred HHhhcCCCchhhhhHHhhhcCCCCCCcccHHHHHHHhhhcCCcccc
Q 039519 288 KYSYDSLPDETIRSCLLYCGLFPEDYRTRKSELIDCWIGEGFLDQY 333 (647)
Q Consensus 288 ~~sy~~L~~~~~k~~fl~~a~fp~~~~i~~~~Li~~w~a~g~~~~~ 333 (647)
.+||+.||+ +.|.||+|||+||+++.|+++.|+++|+++|++++.
T Consensus 241 ~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 241 ELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred eechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 999999999 999999999999999999999999999999999864
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.71 E-value=3.2e-17 Score=194.42 Aligned_cols=227 Identities=19% Similarity=0.202 Sum_probs=123.2
Q ss_pred cccccEEEEEeecccccc-cccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCC-ccccchhcCccCcE
Q 039519 392 QNWRNVRRMSLMKNKIEN-LSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAIT-HLPIDLQKLVNLKC 469 (647)
Q Consensus 392 ~~~~~l~~L~l~~n~i~~-l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~-~lp~~~~~l~~L~~ 469 (647)
..+++|++|++++|.+.. +|..+.++++|++|++++|.....+|..++++++|++|++++|.+. .+|..++++++|++
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 345566666666666653 5555566666666666666444556666666666666666666655 55666666666666
Q ss_pred EeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhhHHHHhhh
Q 039519 470 LNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQALQELLIS 549 (647)
Q Consensus 470 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~ 549 (647)
|++++|.....+|.. ++.+++|++|++.++. + .+..+..++.+++|+.|+++.|.+... ++..
T Consensus 217 L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~---l-----------~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~ 279 (968)
T PLN00113 217 IYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNN---L-----------TGPIPSSLGNLKNLQYLFLYQNKLSGP--IPPS 279 (968)
T ss_pred EECcCCccCCcCChh-HhcCCCCCEEECcCce---e-----------ccccChhHhCCCCCCEEECcCCeeecc--Cchh
Confidence 666666433455655 5666666666555432 2 223334455555555555554433221 1111
Q ss_pred hhhhhccceeeeecc-------------CCCceEEE----------ecccccCCccEEEEcCCCCCCCCh-hhccccCCc
Q 039519 550 QELQRCTQFLFLRCF-------------NDSKSLDI----------FCLACLHNLNKLYVAGCKHLEDFQ-MIIQRSSLS 605 (647)
Q Consensus 550 ~~~~~~l~~l~L~~~-------------~~L~~L~l----------~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~ 605 (647)
...+.+|+.|+++++ ++|+.|++ ..+..+++|+.|+|++|...+.+| +++.+++|+
T Consensus 280 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~ 359 (968)
T PLN00113 280 IFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLT 359 (968)
T ss_pred HhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCc
Confidence 122233444444331 12222222 125556677777777766655555 366667777
Q ss_pred eEEeecccccccccchhhhhhhcCCCCcccCC
Q 039519 606 VHNLFINKNYIHTNQLSILLGINRLPHFTKSN 637 (647)
Q Consensus 606 ~L~L~~~~~~~~~~~~~~l~~l~~L~~L~~~~ 637 (647)
.|+|++| .+.......+..+++|+.|....
T Consensus 360 ~L~Ls~n--~l~~~~p~~~~~~~~L~~L~l~~ 389 (968)
T PLN00113 360 VLDLSTN--NLTGEIPEGLCSSGNLFKLILFS 389 (968)
T ss_pred EEECCCC--eeEeeCChhHhCcCCCCEEECcC
Confidence 7777664 23333344555566666655443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.68 E-value=1.3e-16 Score=189.19 Aligned_cols=224 Identities=21% Similarity=0.239 Sum_probs=124.2
Q ss_pred ccccEEEEEeecccccc-cccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCC-ccccchhcCccCcEE
Q 039519 393 NWRNVRRMSLMKNKIEN-LSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAIT-HLPIDLQKLVNLKCL 470 (647)
Q Consensus 393 ~~~~l~~L~l~~n~i~~-l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L 470 (647)
.+++|++|++++|.+.+ +|. ..+++|++|++++|.....+|..++.+++|++|++++|.+. .+|..++++++|++|
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred cCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence 44555555555555543 221 33455666666666333455656666666666666666654 556666666666666
Q ss_pred eecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhhHHHHhhhh
Q 039519 471 NLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQALQELLISQ 550 (647)
Q Consensus 471 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~ 550 (647)
++++|.....+|.. ++.+++|++|++.++. + .+..+..++.+++|+.|+++.|.+.+. ++...
T Consensus 194 ~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~---l-----------~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~l 256 (968)
T PLN00113 194 TLASNQLVGQIPRE-LGQMKSLKWIYLGYNN---L-----------SGEIPYEIGGLTSLNHLDLVYNNLTGP--IPSSL 256 (968)
T ss_pred eccCCCCcCcCChH-HcCcCCccEEECcCCc---c-----------CCcCChhHhcCCCCCEEECcCceeccc--cChhH
Confidence 66666434455554 5666666666554432 2 345566778888888888887765431 22233
Q ss_pred hhhhccceeeeecc-------------CCCceEEEec----------ccccCCccEEEEcCCCCCCCCh-hhccccCCce
Q 039519 551 ELQRCTQFLFLRCF-------------NDSKSLDIFC----------LACLHNLNKLYVAGCKHLEDFQ-MIIQRSSLSV 606 (647)
Q Consensus 551 ~~~~~l~~l~L~~~-------------~~L~~L~l~~----------~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~ 606 (647)
..+++|+.|.++++ .+|++|++.. +..+++|++|+|++|...+.+| +++.+++|+.
T Consensus 257 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 336 (968)
T PLN00113 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV 336 (968)
T ss_pred hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCE
Confidence 34456666666542 2444444422 3445556666665555544444 3555666666
Q ss_pred EEeecccccccccchhhhhhhcCCCCcccCC
Q 039519 607 HNLFINKNYIHTNQLSILLGINRLPHFTKSN 637 (647)
Q Consensus 607 L~L~~~~~~~~~~~~~~l~~l~~L~~L~~~~ 637 (647)
|+|++| .+.......++.+++|+.|+..+
T Consensus 337 L~L~~n--~l~~~~p~~l~~~~~L~~L~Ls~ 365 (968)
T PLN00113 337 LQLWSN--KFSGEIPKNLGKHNNLTVLDLST 365 (968)
T ss_pred EECcCC--CCcCcCChHHhCCCCCcEEECCC
Confidence 666553 23333334455556666555443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.65 E-value=6.4e-18 Score=173.29 Aligned_cols=215 Identities=20% Similarity=0.227 Sum_probs=121.6
Q ss_pred ccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCcccc-ccccCCCeeeecCCCCCccccchhcCccC
Q 039519 389 PEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGI-STLVSLEHLDLSSTAITHLPIDLQKLVNL 467 (647)
Q Consensus 389 ~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~-~~L~~L~~L~L~~~~l~~lp~~~~~l~~L 467 (647)
+++..+..|+.|+|++|++.++|..+..-+++-+|+||+| .+.++|..+ -+|+-|-+||||+|++..||+-+..|.+|
T Consensus 97 ~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~L 175 (1255)
T KOG0444|consen 97 TDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSML 175 (1255)
T ss_pred chhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhh
Confidence 4555666666666666666666666655566666666666 566666553 35666666666666666666666666666
Q ss_pred cEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccc-----------cccCCccccHHHhhCCCCCcEEEEE
Q 039519 468 KCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSN-----------VLFGGHQVLVEELIGMKYLMAVTIT 536 (647)
Q Consensus 468 ~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~-----------~~~~~~~~~~~~l~~l~~L~~L~l~ 536 (647)
++|.|++|+ +..+.-.-+..+++|+.|++++... .+.++|.. +........++.+..+.+|+.|+++
T Consensus 176 qtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS 253 (1255)
T KOG0444|consen 176 QTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLS 253 (1255)
T ss_pred hhhhcCCCh-hhHHHHhcCccchhhhhhhcccccc-hhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccC
Confidence 666666652 2221110022244444554444332 22233331 1112245667778888899999998
Q ss_pred ecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCC--CCCChhhccccCCceEEeec
Q 039519 537 LKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKH--LEDFQMIIQRSSLSVHNLFI 611 (647)
Q Consensus 537 ~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~--~~~~~~~~~l~~L~~L~L~~ 611 (647)
.|.++.+ ......+.+++.|+|+. ++|..|+ .++..++.|+.|++.+|.. -+.|..+++|.+|+.+..++
T Consensus 254 ~N~iteL---~~~~~~W~~lEtLNlSr-NQLt~LP-~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan 325 (1255)
T KOG0444|consen 254 GNKITEL---NMTEGEWENLETLNLSR-NQLTVLP-DAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN 325 (1255)
T ss_pred cCceeee---eccHHHHhhhhhhcccc-chhccch-HHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc
Confidence 7776653 34455666788888876 5666665 3445555555555554432 12222355555555554444
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.59 E-value=6.6e-16 Score=157.83 Aligned_cols=246 Identities=20% Similarity=0.215 Sum_probs=107.2
Q ss_pred CCCcccCccccccc-cEEEEEeecccccccccC-CCCcceeeEEeccCccccccCcc-ccccccCCCeeeecCCCCCccc
Q 039519 382 GFGLTEAPEIQNWR-NVRRMSLMKNKIENLSEL-QPALTFFLFFNMSNNHLLWKLPL-GISTLVSLEHLDLSSTAITHLP 458 (647)
Q Consensus 382 ~~~~~~~~~~~~~~-~l~~L~l~~n~i~~l~~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~L~~~~l~~lp 458 (647)
.+.++.+|.++... +++.|+|.+|.|..+... +..++-|+.||||.| .+..+|. +|..=.++++|+|++|.|+.+-
T Consensus 111 ~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~ 189 (873)
T KOG4194|consen 111 KNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLE 189 (873)
T ss_pred cchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccc
Confidence 33444455544433 255555555555544322 244445555555555 4444432 2333345555555555555443
Q ss_pred -cchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccC-------------CccccHHHh
Q 039519 459 -IDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFG-------------GHQVLVEEL 524 (647)
Q Consensus 459 -~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~-------------~~~~~~~~l 524 (647)
..|..+.+|.+|.|+.| .+.++|...|.+++.|+.|++. .|.+..+..-.|.+ -....-..+
T Consensus 190 ~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLn---rN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~F 265 (873)
T KOG4194|consen 190 TGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLN---RNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAF 265 (873)
T ss_pred cccccccchheeeecccC-cccccCHHHhhhcchhhhhhcc---ccceeeehhhhhcCchhhhhhhhhhcCcccccCcce
Confidence 23445555555555555 4555555545555555555333 23331110000000 000000112
Q ss_pred hCCCCCcEEEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChh-hccccC
Q 039519 525 IGMKYLMAVTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQM-IIQRSS 603 (647)
Q Consensus 525 ~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~ 603 (647)
..|.++++|++..|.+..+.+ .....++.|+.|+|++ +.++.+.++..+-.++|+.|+|++|......+. |.-|..
T Consensus 266 y~l~kme~l~L~~N~l~~vn~--g~lfgLt~L~~L~lS~-NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~ 342 (873)
T KOG4194|consen 266 YGLEKMEHLNLETNRLQAVNE--GWLFGLTSLEQLDLSY-NAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQ 342 (873)
T ss_pred eeecccceeecccchhhhhhc--ccccccchhhhhccch-hhhheeecchhhhcccceeEeccccccccCChhHHHHHHH
Confidence 223333334433333322211 0111223344444443 344444444444455555666655544333332 555555
Q ss_pred CceEEeecccccccccchhhhhhhcCCCCcccCC
Q 039519 604 LSVHNLFINKNYIHTNQLSILLGINRLPHFTKSN 637 (647)
Q Consensus 604 L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~~~~ 637 (647)
|+.|+|+. |.+....-..+.++++|..|+...
T Consensus 343 Le~LnLs~--Nsi~~l~e~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 343 LEELNLSH--NSIDHLAEGAFVGLSSLHKLDLRS 374 (873)
T ss_pred hhhhcccc--cchHHHHhhHHHHhhhhhhhcCcC
Confidence 66666655 334444444555556666555443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.58 E-value=1.2e-16 Score=164.11 Aligned_cols=252 Identities=21% Similarity=0.240 Sum_probs=143.6
Q ss_pred cceEEecCCCcccCcc-ccccccEEEEEeecccccccccCCCCcceeeEEeccCccc-cccCccccccccCCCeeeecCC
Q 039519 375 ENFLVHAGFGLTEAPE-IQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHL-LWKLPLGISTLVSLEHLDLSST 452 (647)
Q Consensus 375 ~~~l~~~~~~~~~~~~-~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~-~~~lp~~~~~L~~L~~L~L~~~ 452 (647)
..|+..+..++..+|. ++.+.+|..|++.+|++..+-..++.|+.||.+.+..|+. -..+|+.+..|.-|..||||+|
T Consensus 34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN 113 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN 113 (1255)
T ss_pred eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchh
Confidence 3456655555555553 5666777777777777776666667777777777776622 1236777777777777777777
Q ss_pred CCCccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccc---------cCCccccHHH
Q 039519 453 AITHLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVL---------FGGHQVLVEE 523 (647)
Q Consensus 453 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~---------~~~~~~~~~~ 523 (647)
.+.+.|..+...+++..|+|++| ++.+||..++-+++.|-.| +++.|.+..+|+.+. ....+.....
T Consensus 114 qL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfL---DLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQ 189 (1255)
T KOG0444|consen 114 QLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFL---DLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQ 189 (1255)
T ss_pred hhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhh---ccccchhhhcCHHHHHHhhhhhhhcCCChhhHHH
Confidence 77777777777777777777776 6777777666566655555 334466655554321 0001111122
Q ss_pred hh---CCCCCcEEEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChhhcc
Q 039519 524 LI---GMKYLMAVTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQMIIQ 600 (647)
Q Consensus 524 l~---~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~~~ 600 (647)
|. .|++|++|.++...- .+..++.+...+.+|..++|+. ++|..++ .|+-++.+|+.|+|++|.+...--..+.
T Consensus 190 LrQLPsmtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~-N~Lp~vP-ecly~l~~LrrLNLS~N~iteL~~~~~~ 266 (1255)
T KOG0444|consen 190 LRQLPSMTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSE-NNLPIVP-ECLYKLRNLRRLNLSGNKITELNMTEGE 266 (1255)
T ss_pred HhcCccchhhhhhhcccccc-hhhcCCCchhhhhhhhhccccc-cCCCcch-HHHhhhhhhheeccCcCceeeeeccHHH
Confidence 22 233444444443221 1223333333444455555543 4554444 4566677777777777744332223555
Q ss_pred ccCCceEEeecccccccccchhhhhhhcCCCCcccC
Q 039519 601 RSSLSVHNLFINKNYIHTNQLSILLGINRLPHFTKS 636 (647)
Q Consensus 601 l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~~~ 636 (647)
..+|+.|+||.| .+... +..+.+|+.|+.|...
T Consensus 267 W~~lEtLNlSrN--QLt~L-P~avcKL~kL~kLy~n 299 (1255)
T KOG0444|consen 267 WENLETLNLSRN--QLTVL-PDAVCKLTKLTKLYAN 299 (1255)
T ss_pred Hhhhhhhccccc--hhccc-hHHHhhhHHHHHHHhc
Confidence 677777777774 23311 2245566666665443
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.58 E-value=3.3e-16 Score=153.36 Aligned_cols=226 Identities=23% Similarity=0.213 Sum_probs=151.1
Q ss_pred CCCcccCccccccccEEEEEeecccccccccCC-CCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccc
Q 039519 382 GFGLTEAPEIQNWRNVRRMSLMKNKIENLSELQ-PALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPID 460 (647)
Q Consensus 382 ~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~~-~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~ 460 (647)
...+..+|+|.+++.+..+.+..|+|+.+|... .+|.++.+||+..| .++..|+.++.|.+|.+||+++|.|+.+|.+
T Consensus 215 ~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~is~Lp~s 293 (565)
T KOG0472|consen 215 RNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNNDISSLPYS 293 (565)
T ss_pred hcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccCCccccCCcc
Confidence 445677888888888999999999998888776 58888999999999 8889999999999999999999999999999
Q ss_pred hhcCccCcEEeecccccCCcCchhhh-----------------------------------------cCCCCCcEEecc-
Q 039519 461 LQKLVNLKCLNLQYMYNLNQFPRLVI-----------------------------------------SAFSKLQVLRMF- 498 (647)
Q Consensus 461 ~~~l~~L~~L~l~~~~~l~~lp~~~i-----------------------------------------~~l~~L~~L~l~- 498 (647)
+|++ .|+.|-+.+| .+.++-.+++ ..+.+.+.|+++
T Consensus 294 Lgnl-hL~~L~leGN-PlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~ 371 (565)
T KOG0472|consen 294 LGNL-HLKFLALEGN-PLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD 371 (565)
T ss_pred cccc-eeeehhhcCC-chHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc
Confidence 9988 8888888776 3343322211 112222333222
Q ss_pred ----------------------ccCCCccccccccc------------ccCCccccHHHhhCCCCCcEEEEEecchhhHH
Q 039519 499 ----------------------DCGGSKIERLKSNV------------LFGGHQVLVEELIGMKYLMAVTITLKRLQALQ 544 (647)
Q Consensus 499 ----------------------~~~~n~~~~~~~~~------------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~ 544 (647)
+.+.|++.++|.+. ........+..++.+++|..|+++.|.+..++
T Consensus 372 ~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP 451 (565)
T KOG0472|consen 372 KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLP 451 (565)
T ss_pred cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcc
Confidence 33445555555431 11122333344555555555555544433321
Q ss_pred HHhhhhhhhhccceeeeec----------------------cCCCceEEEecccccCCccEEEEcCCCCCCCChhhcccc
Q 039519 545 ELLISQELQRCTQFLFLRC----------------------FNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQMIIQRS 602 (647)
Q Consensus 545 ~l~~~~~~~~~l~~l~L~~----------------------~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~ 602 (647)
.....+..|+.++++. -+++.+++.+.+.++.+|..|+|.+|.....||.++++.
T Consensus 452 ---~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~Lgnmt 528 (565)
T KOG0472|consen 452 ---EEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMT 528 (565)
T ss_pred ---hhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhcccc
Confidence 1222222344444332 135555555558899999999999997777777899999
Q ss_pred CCceEEeeccc
Q 039519 603 SLSVHNLFINK 613 (647)
Q Consensus 603 ~L~~L~L~~~~ 613 (647)
+|++|.|.||+
T Consensus 529 nL~hLeL~gNp 539 (565)
T KOG0472|consen 529 NLRHLELDGNP 539 (565)
T ss_pred ceeEEEecCCc
Confidence 99999999965
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.57 E-value=2.4e-16 Score=160.99 Aligned_cols=99 Identities=26% Similarity=0.384 Sum_probs=45.2
Q ss_pred cEEEEEeecccccccccC-CCCcceeeEEeccCccccccCccc-cccccCCCeeeecCCCCCcc-ccchhcCccCcEEee
Q 039519 396 NVRRMSLMKNKIENLSEL-QPALTFFLFFNMSNNHLLWKLPLG-ISTLVSLEHLDLSSTAITHL-PIDLQKLVNLKCLNL 472 (647)
Q Consensus 396 ~l~~L~l~~n~i~~l~~~-~~~l~~L~~L~l~~~~~~~~lp~~-~~~L~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l 472 (647)
+++.|+|.+|.|+.+... +..|.+|..|.|+.| .++.+|.. |..|++|+.|+|..|.|... ...|..|++|+.|.|
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 445555555555443322 244444445555555 44444432 23355555555555544433 234444444444444
Q ss_pred cccccCCcCchhhhcCCCCCcEEe
Q 039519 473 QYMYNLNQFPRLVISAFSKLQVLR 496 (647)
Q Consensus 473 ~~~~~l~~lp~~~i~~l~~L~~L~ 496 (647)
..| .+..+.+|.|..+.++++|+
T Consensus 253 qrN-~I~kL~DG~Fy~l~kme~l~ 275 (873)
T KOG4194|consen 253 QRN-DISKLDDGAFYGLEKMEHLN 275 (873)
T ss_pred hhc-CcccccCcceeeecccceee
Confidence 444 44444444444444444443
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.52 E-value=3.7e-17 Score=159.98 Aligned_cols=207 Identities=25% Similarity=0.305 Sum_probs=137.8
Q ss_pred ccCccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccchhcCc
Q 039519 386 TEAPEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLV 465 (647)
Q Consensus 386 ~~~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~ 465 (647)
+-+|+.+.+..+..+..++|++.++|.....+..++.|+.++| ....+|++++.+..|..|+..+|+++.+|.+++++.
T Consensus 82 ~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~ 160 (565)
T KOG0472|consen 82 QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLS 160 (565)
T ss_pred hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHhhhhhhhccccccccCchHHHHHH
Confidence 3445677777888888888888888888777777888888888 677788888888888888888888888888888888
Q ss_pred cCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecch-----
Q 039519 466 NLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRL----- 540 (647)
Q Consensus 466 ~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~----- 540 (647)
+|..|++.+| .++.+|+..+. ++.|++| +|..|.+.++|++ ++.|.+|..|++..|.+
T Consensus 161 ~l~~l~~~~n-~l~~l~~~~i~-m~~L~~l---d~~~N~L~tlP~~------------lg~l~~L~~LyL~~Nki~~lPe 223 (565)
T KOG0472|consen 161 KLSKLDLEGN-KLKALPENHIA-MKRLKHL---DCNSNLLETLPPE------------LGGLESLELLYLRRNKIRFLPE 223 (565)
T ss_pred HHHHhhcccc-chhhCCHHHHH-HHHHHhc---ccchhhhhcCChh------------hcchhhhHHHHhhhcccccCCC
Confidence 8888888887 67788877444 7777777 6666666555543 44444444444443332
Q ss_pred ----hhHHHHhhhhhhh-----------hccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChhhccccCCc
Q 039519 541 ----QALQELLISQELQ-----------RCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQMIIQRSSLS 605 (647)
Q Consensus 541 ----~~l~~l~~~~~~~-----------~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~ 605 (647)
+.+.++....+.. .++..|+|.. ++|++++ ..+..+.+|.+|++++|....-++.+++| .|+
T Consensus 224 f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~P-de~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~ 300 (565)
T KOG0472|consen 224 FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVP-DEICLLRSLERLDLSNNDISSLPYSLGNL-HLK 300 (565)
T ss_pred CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCc-hHHHHhhhhhhhcccCCccccCCcccccc-eee
Confidence 2333333322222 2333334433 3444433 22556777888888877655555557887 788
Q ss_pred eEEeeccc
Q 039519 606 VHNLFINK 613 (647)
Q Consensus 606 ~L~L~~~~ 613 (647)
+|.+.|||
T Consensus 301 ~L~leGNP 308 (565)
T KOG0472|consen 301 FLALEGNP 308 (565)
T ss_pred ehhhcCCc
Confidence 88888865
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.50 E-value=6.1e-14 Score=167.03 Aligned_cols=79 Identities=30% Similarity=0.450 Sum_probs=37.3
Q ss_pred eeeEEeccCccccccCccccccccCCCeeeecCC-CCCccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEec
Q 039519 419 FFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSST-AITHLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRM 497 (647)
Q Consensus 419 ~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~-~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l 497 (647)
+|+.|++++| .+..+|.++..+++|++|+|++| .+..+| .++.+++|++|++++|..+..+|.. ++.+++|+.|++
T Consensus 612 ~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L 688 (1153)
T PLN03210 612 NLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDM 688 (1153)
T ss_pred CCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeC
Confidence 3444444444 34444444444555555555443 234444 2444455555555554444455544 445555555544
Q ss_pred ccc
Q 039519 498 FDC 500 (647)
Q Consensus 498 ~~~ 500 (647)
.+|
T Consensus 689 ~~c 691 (1153)
T PLN03210 689 SRC 691 (1153)
T ss_pred CCC
Confidence 443
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=1.9e-15 Score=131.39 Aligned_cols=137 Identities=26% Similarity=0.393 Sum_probs=112.5
Q ss_pred ccCccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccchhcCc
Q 039519 386 TEAPEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLV 465 (647)
Q Consensus 386 ~~~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~ 465 (647)
..+|.+..++++++|.+++|+++.+|+.+..|.+|+.|++++| .++.+|.+++.|+.|+.|++.-|++..+|..||.++
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFP 102 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCCCc
Confidence 3457778889999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred cCcEEeecccccCC--cCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecch
Q 039519 466 NLKCLNLQYMYNLN--QFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRL 540 (647)
Q Consensus 466 ~L~~L~l~~~~~l~--~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 540 (647)
-|+.||+++| ++. .+|.. +-.++.|+.| +++.|.+ ...+.+.+.+++|+.|.+..|++
T Consensus 103 ~levldltyn-nl~e~~lpgn-ff~m~tlral---yl~dndf------------e~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 103 ALEVLDLTYN-NLNENSLPGN-FFYMTTLRAL---YLGDNDF------------EILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred hhhhhhcccc-ccccccCCcc-hhHHHHHHHH---HhcCCCc------------ccCChhhhhhcceeEEeeccCch
Confidence 9999999987 443 46665 3345555555 5555665 34455678899999988885544
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.44 E-value=1.2e-14 Score=156.48 Aligned_cols=231 Identities=23% Similarity=0.172 Sum_probs=158.1
Q ss_pred cceEEecCCCcccCccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCC
Q 039519 375 ENFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAI 454 (647)
Q Consensus 375 ~~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l 454 (647)
.+.+...+..++....-..+.++++++++.|++..+|.++..+.+|..++..+| .+..+|..+....+|++|.+..|.+
T Consensus 221 l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~nel 299 (1081)
T KOG0618|consen 221 LTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAYNEL 299 (1081)
T ss_pred hheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhhhhh
Confidence 445555555555443344567999999999999999977799999999999999 7789999999999999999999999
Q ss_pred CccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccc-------------cccCCccccH
Q 039519 455 THLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSN-------------VLFGGHQVLV 521 (647)
Q Consensus 455 ~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~-------------~~~~~~~~~~ 521 (647)
+.+|+...+++.|++|+|..| .+..+|+.++..+.. .|+..+.+.|.+...|.. +.+......+
T Consensus 300 ~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~--~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~ 376 (1081)
T KOG0618|consen 300 EYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNA--SLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF 376 (1081)
T ss_pred hhCCCcccccceeeeeeehhc-cccccchHHHhhhhH--HHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch
Confidence 999999999999999999998 889999864433222 133334455555444421 1122355666
Q ss_pred HHhhCCCCCcEEEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEec----------------------ccccC
Q 039519 522 EELIGMKYLMAVTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFC----------------------LACLH 579 (647)
Q Consensus 522 ~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~----------------------~~~l~ 579 (647)
+-|.+..+|+.|+++.|.+..++. +....+..|+.|.|++ +.|+.|+ .+ +..++
T Consensus 377 p~l~~~~hLKVLhLsyNrL~~fpa--s~~~kle~LeeL~LSG-NkL~~Lp-~tva~~~~L~tL~ahsN~l~~fPe~~~l~ 452 (1081)
T KOG0618|consen 377 PVLVNFKHLKVLHLSYNRLNSFPA--SKLRKLEELEELNLSG-NKLTTLP-DTVANLGRLHTLRAHSNQLLSFPELAQLP 452 (1081)
T ss_pred hhhccccceeeeeecccccccCCH--HHHhchHHhHHHhccc-chhhhhh-HHHHhhhhhHHHhhcCCceeechhhhhcC
Confidence 778888999999999886654432 2234455677777777 6666665 22 44555
Q ss_pred CccEEEEcCCCCCCCChhhccc-cCCceEEeeccc
Q 039519 580 NLNKLYVAGCKHLEDFQMIIQR-SSLSVHNLFINK 613 (647)
Q Consensus 580 ~L~~L~L~~~~~~~~~~~~~~l-~~L~~L~L~~~~ 613 (647)
.|+.++|+.|......-...-. ++|++|||+||.
T Consensus 453 qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 453 QLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 5666666554332221111111 556666666643
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=6.4e-15 Score=128.16 Aligned_cols=148 Identities=27% Similarity=0.382 Sum_probs=126.7
Q ss_pred EEecCCCccc-CccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCC-
Q 039519 378 LVHAGFGLTE-APEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAIT- 455 (647)
Q Consensus 378 l~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~- 455 (647)
++.++..++. +|++..+.+++.|.+++|+|+++|..++.|+.|+.|+++-| .+..+|.+|+.++.|+.|||.+|++.
T Consensus 38 LtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldltynnl~e 116 (264)
T KOG0617|consen 38 LTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLTYNNLNE 116 (264)
T ss_pred hhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhcccccccc
Confidence 3334444444 47788999999999999999999999999999999999999 78899999999999999999999887
Q ss_pred -ccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEE
Q 039519 456 -HLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVT 534 (647)
Q Consensus 456 -~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 534 (647)
.+|..|..|+.|+.|++++| ....+|+. ++++++|+.|.+.+ |.+ -..+.+++.++.|+.|+
T Consensus 117 ~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrd---ndl------------l~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 117 NSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRD---NDL------------LSLPKEIGDLTRLRELH 179 (264)
T ss_pred ccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeecc---Cch------------hhCcHHHHHHHHHHHHh
Confidence 79999999999999999998 67889998 99999999996654 443 45667888999999999
Q ss_pred EEecchhhH
Q 039519 535 ITLKRLQAL 543 (647)
Q Consensus 535 l~~~~~~~l 543 (647)
+.+|.++-+
T Consensus 180 iqgnrl~vl 188 (264)
T KOG0617|consen 180 IQGNRLTVL 188 (264)
T ss_pred cccceeeec
Confidence 987766543
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.35 E-value=1.7e-13 Score=134.40 Aligned_cols=238 Identities=21% Similarity=0.178 Sum_probs=158.5
Q ss_pred cceEEecCCCcccCccccccccEEEEEeecccccccccCC-CCcceeeEEeccCccccccCccccccccCCCeeeecC-C
Q 039519 375 ENFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSELQ-PALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSS-T 452 (647)
Q Consensus 375 ~~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~~-~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~-~ 452 (647)
...+.+.+.+++.+|.- -+.....+.|..|+|+.+|+.. ..++.||.||||+|.....-|..|.+|..|..|-+-+ |
T Consensus 48 g~~VdCr~~GL~eVP~~-LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 48 GGIVDCRGKGLTEVPAN-LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred CceEEccCCCcccCccc-CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 45677888888888753 2457888999999999988764 8888999999999843344577788888887777655 7
Q ss_pred CCCcccc-chhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcc--------------------------
Q 039519 453 AITHLPI-DLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKI-------------------------- 505 (647)
Q Consensus 453 ~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~-------------------------- 505 (647)
+|+.+|+ .|++|..|+.|.+.-| .+.-++.+.+..+++|..|.+.+...+.+
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 8888884 4566666666666655 44555555555566555555544221111
Q ss_pred -------------------------------c------------cccccc---ccCCccccHHHhhCCCCCcEEEEEecc
Q 039519 506 -------------------------------E------------RLKSNV---LFGGHQVLVEELIGMKYLMAVTITLKR 539 (647)
Q Consensus 506 -------------------------------~------------~~~~~~---~~~~~~~~~~~l~~l~~L~~L~l~~~~ 539 (647)
. .+++.. +..........++.|++|++|+++.|.
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 0 000000 011122233457788899999999888
Q ss_pred hhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChh-hccccCCceEEeeccccccc
Q 039519 540 LQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQM-IIQRSSLSVHNLFINKNYIH 617 (647)
Q Consensus 540 ~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~ 617 (647)
++.++.- ......+++.|.|.. ++|+.+.=..|.+++.|+.|+|.+|++...-|. |..+.+|..|+|-.|+....
T Consensus 286 i~~i~~~--aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 286 ITRIEDG--AFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred cchhhhh--hhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 8877542 233345677777765 566655544488899999999999876665553 88888999999988774443
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.34 E-value=2.1e-12 Score=143.33 Aligned_cols=219 Identities=23% Similarity=0.150 Sum_probs=104.4
Q ss_pred ceEEecCCCcccCccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCC
Q 039519 376 NFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAIT 455 (647)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~ 455 (647)
..+...++.++.+|.. +++|++|++++|+++.+|..+ ++|+.|++++| .+..+|... ..|+.|++++|+++
T Consensus 225 ~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~lp---~sL~~L~Ls~N-~L~~Lp~lp---~~L~~L~Ls~N~Lt 295 (788)
T PRK15387 225 TTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVLP---PGLLELSIFSN-PLTHLPALP---SGLCKLWIFGNQLT 295 (788)
T ss_pred CEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCcc---cccceeeccCC-chhhhhhch---hhcCEEECcCCccc
Confidence 3444555566666643 467777777777777766432 34445555555 344443211 23334444444444
Q ss_pred ccccchhcCccCcEEeecccccCCcCchhhhcC-----------------CCCCcEEeccccCCCccccccccccc----
Q 039519 456 HLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISA-----------------FSKLQVLRMFDCGGSKIERLKSNVLF---- 514 (647)
Q Consensus 456 ~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~-----------------l~~L~~L~l~~~~~n~~~~~~~~~~~---- 514 (647)
.+|.. +++|+.|++++| .+..+|.. +.. ..+|+.|+++ .|++..+|.....
T Consensus 296 ~LP~~---p~~L~~LdLS~N-~L~~Lp~l-p~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS---~N~Ls~LP~lp~~L~~L 367 (788)
T PRK15387 296 SLPVL---PPGLQELSVSDN-QLASLPAL-PSELCKLWAYNNQLTSLPTLPSGLQELSVS---DNQLASLPTLPSELYKL 367 (788)
T ss_pred ccccc---ccccceeECCCC-ccccCCCC-cccccccccccCccccccccccccceEecC---CCccCCCCCCCccccee
Confidence 44431 234444444444 33333321 111 1244555433 3444443321000
Q ss_pred CCccccHHHhh-CCCCCcEEEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCC
Q 039519 515 GGHQVLVEELI-GMKYLMAVTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLE 593 (647)
Q Consensus 515 ~~~~~~~~~l~-~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~ 593 (647)
......+..+. ...+|+.|+++.|.++.++. ...+|+.|++++ +.|.+++ ..+.+|+.|+|++|.+..
T Consensus 368 ~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~------l~s~L~~LdLS~-N~LssIP----~l~~~L~~L~Ls~NqLt~ 436 (788)
T PRK15387 368 WAYNNRLTSLPALPSGLKELIVSGNRLTSLPV------LPSELKELMVSG-NRLTSLP----MLPSGLLSLSVYRNQLTR 436 (788)
T ss_pred hhhccccccCcccccccceEEecCCcccCCCC------cccCCCEEEccC-CcCCCCC----cchhhhhhhhhccCcccc
Confidence 00000000000 11345666666555543322 123455666665 4455443 124567888888876554
Q ss_pred CChhhccccCCceEEeecccccccccchhhh
Q 039519 594 DFQMIIQRSSLSVHNLFINKNYIHTNQLSIL 624 (647)
Q Consensus 594 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l 624 (647)
.|..+.++++|+.|+|++|+ ++...+..+
T Consensus 437 LP~sl~~L~~L~~LdLs~N~--Ls~~~~~~L 465 (788)
T PRK15387 437 LPESLIHLSSETTVNLEGNP--LSERTLQAL 465 (788)
T ss_pred cChHHhhccCCCeEECCCCC--CCchHHHHH
Confidence 44457888888999998854 554444434
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.26 E-value=1.2e-11 Score=138.30 Aligned_cols=207 Identities=20% Similarity=0.197 Sum_probs=118.7
Q ss_pred EEecCCCcccCccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCcc
Q 039519 378 LVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHL 457 (647)
Q Consensus 378 l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~l 457 (647)
+...+.+++.+|... +++++.|++++|.++.+|..+. ++|+.|++++| .+..+|..+. .+|+.|+|++|.+..+
T Consensus 183 L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~L~~L 256 (754)
T PRK15370 183 LRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSINRITEL 256 (754)
T ss_pred EEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcCCccCcC
Confidence 444445556665421 3567778888887777776443 46777777777 5667776543 4677777777777777
Q ss_pred ccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCccccccccccc---------CCccccHHHhhCCC
Q 039519 458 PIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLF---------GGHQVLVEELIGMK 528 (647)
Q Consensus 458 p~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~---------~~~~~~~~~l~~l~ 528 (647)
|..+. ++|+.|++++| .+..+|.. +. .+|+.|++++ |++..+|..+.. ......+.. ..+
T Consensus 257 P~~l~--s~L~~L~Ls~N-~L~~LP~~-l~--~sL~~L~Ls~---N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~--l~~ 325 (754)
T PRK15370 257 PERLP--SALQSLDLFHN-KISCLPEN-LP--EELRYLSVYD---NSIRTLPAHLPSGITHLNVQSNSLTALPET--LPP 325 (754)
T ss_pred ChhHh--CCCCEEECcCC-ccCccccc-cC--CCCcEEECCC---CccccCcccchhhHHHHHhcCCccccCCcc--ccc
Confidence 76554 46777777766 66677765 32 4677775543 455444432110 000000000 124
Q ss_pred CCcEEEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChhhccccCCceEE
Q 039519 529 YLMAVTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQMIIQRSSLSVHN 608 (647)
Q Consensus 529 ~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~ 608 (647)
+|+.|.++.|.++.++. ...++|+.|++++ +++..++- .-+++|++|+|++|.+...|+.+. ++|+.|+
T Consensus 326 sL~~L~Ls~N~Lt~LP~-----~l~~sL~~L~Ls~-N~L~~LP~---~lp~~L~~LdLs~N~Lt~LP~~l~--~sL~~Ld 394 (754)
T PRK15370 326 GLKTLEAGENALTSLPA-----SLPPELQVLDVSK-NQITVLPE---TLPPTITTLDVSRNALTNLPENLP--AALQIMQ 394 (754)
T ss_pred cceeccccCCccccCCh-----hhcCcccEEECCC-CCCCcCCh---hhcCCcCEEECCCCcCCCCCHhHH--HHHHHHh
Confidence 56666666665554321 1124566777766 35554431 123577888888776554444442 3577777
Q ss_pred eecc
Q 039519 609 LFIN 612 (647)
Q Consensus 609 L~~~ 612 (647)
+++|
T Consensus 395 Ls~N 398 (754)
T PRK15370 395 ASRN 398 (754)
T ss_pred hccC
Confidence 7775
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.26 E-value=6e-12 Score=140.67 Aligned_cols=212 Identities=17% Similarity=0.170 Sum_probs=129.8
Q ss_pred ceEEecCCCcccCccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCC
Q 039519 376 NFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAIT 455 (647)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~ 455 (647)
..+...++.++.+|... ..+|+.|++++|.++.+|..++ .+|+.|++++| .+..+|..+. .+|++|++++|+++
T Consensus 202 ~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~N~L~ 275 (754)
T PRK15370 202 TTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPATLP--DTIQEMELSIN-RITELPERLP--SALQSLDLFHNKIS 275 (754)
T ss_pred cEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChhhh--ccccEEECcCC-ccCcCChhHh--CCCCEEECcCCccC
Confidence 34555556666666432 3578888888888777765443 35777777777 5667776554 46777777777777
Q ss_pred ccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccC---------CccccHHHhhC
Q 039519 456 HLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFG---------GHQVLVEELIG 526 (647)
Q Consensus 456 ~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~---------~~~~~~~~l~~ 526 (647)
.+|..+. ++|+.|++++| .+..+|.. +. .+|+.|++. .|++..+|...... .....+..+
T Consensus 276 ~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls---~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l-- 344 (754)
T PRK15370 276 CLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQ---SNSLTALPETLPPGLKTLEAGENALTSLPASL-- 344 (754)
T ss_pred ccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhc---CCccccCCccccccceeccccCCccccCChhh--
Confidence 7776553 46777777776 56666654 21 244444333 24443333211100 000111112
Q ss_pred CCCCcEEEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChh----hcccc
Q 039519 527 MKYLMAVTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQM----IIQRS 602 (647)
Q Consensus 527 l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~----~~~l~ 602 (647)
.++|+.|+++.|.++.++. .....|+.|++++ ++|..++- .-..+|+.|++++|.+...+.. ++.++
T Consensus 345 ~~sL~~L~Ls~N~L~~LP~-----~lp~~L~~LdLs~-N~Lt~LP~---~l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~ 415 (754)
T PRK15370 345 PPELQVLDVSKNQITVLPE-----TLPPTITTLDVSR-NALTNLPE---NLPAALQIMQASRNNLVRLPESLPHFRGEGP 415 (754)
T ss_pred cCcccEEECCCCCCCcCCh-----hhcCCcCEEECCC-CcCCCCCH---hHHHHHHHHhhccCCcccCchhHHHHhhcCC
Confidence 2589999999888775432 1235788999988 46776652 1234799999999976544333 34568
Q ss_pred CCceEEeeccc
Q 039519 603 SLSVHNLFINK 613 (647)
Q Consensus 603 ~L~~L~L~~~~ 613 (647)
++..|+|.+|+
T Consensus 416 ~l~~L~L~~Np 426 (754)
T PRK15370 416 QPTRIIVEYNP 426 (754)
T ss_pred CccEEEeeCCC
Confidence 89999999954
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.14 E-value=6.6e-11 Score=131.66 Aligned_cols=233 Identities=21% Similarity=0.180 Sum_probs=142.4
Q ss_pred cceEEecCCCcccCccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCC
Q 039519 375 ENFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAI 454 (647)
Q Consensus 375 ~~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l 454 (647)
...+...+.+++.+|... .++++.|++.+|+++.+|.. +++|++|++++| .+..+|.. .++|+.|++++|.+
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N~L 274 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSNPL 274 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccCCch
Confidence 456777777888887632 35899999999999998864 467899999999 78788853 46899999999999
Q ss_pred CccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccc---ccc-CCccccHHHhhCC-CC
Q 039519 455 THLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSN---VLF-GGHQVLVEELIGM-KY 529 (647)
Q Consensus 455 ~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~---~~~-~~~~~~~~~l~~l-~~ 529 (647)
+.+|.. .++|+.|++++| .+..+|.. +++|+.|+++ .|++..+|.. +.. ......+..+..+ .+
T Consensus 275 ~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~~----p~~L~~LdLS---~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~ 343 (788)
T PRK15387 275 THLPAL---PSGLCKLWIFGN-QLTSLPVL----PPGLQELSVS---DNQLASLPALPSELCKLWAYNNQLTSLPTLPSG 343 (788)
T ss_pred hhhhhc---hhhcCEEECcCC-cccccccc----ccccceeECC---CCccccCCCCcccccccccccCccccccccccc
Confidence 998863 357889999998 78888863 4678888665 4666665531 100 0001111111111 36
Q ss_pred CcEEEEEecchhhHHHHhhhhhhhhccceeeeeccCC----------CceEEEec--c----cccCCccEEEEcCCCCCC
Q 039519 530 LMAVTITLKRLQALQELLISQELQRCTQFLFLRCFND----------SKSLDIFC--L----ACLHNLNKLYVAGCKHLE 593 (647)
Q Consensus 530 L~~L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~----------L~~L~l~~--~----~~l~~L~~L~L~~~~~~~ 593 (647)
|+.|+++.|.++.++.++ .+|..|.+++ +. |+.|+++. + ..+++|+.|++++|.+..
T Consensus 344 Lq~LdLS~N~Ls~LP~lp------~~L~~L~Ls~-N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~Lss 416 (788)
T PRK15387 344 LQELSVSDNQLASLPTLP------SELYKLWAYN-NRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTS 416 (788)
T ss_pred cceEecCCCccCCCCCCC------cccceehhhc-cccccCcccccccceEEecCCcccCCCCcccCCCEEEccCCcCCC
Confidence 888888887776644321 2334444433 22 22222211 0 113456666666664333
Q ss_pred CChhhccccCCceEEeecccccccccchhhhhhhcCCCCcccCCCC
Q 039519 594 DFQMIIQRSSLSVHNLFINKNYIHTNQLSILLGINRLPHFTKSNPY 639 (647)
Q Consensus 594 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~ 639 (647)
+|.+ +.+|+.|++++| .+.. .+..+.++++|..|+..++.
T Consensus 417 -IP~l--~~~L~~L~Ls~N--qLt~-LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 417 -LPML--PSGLLSLSVYRN--QLTR-LPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred -CCcc--hhhhhhhhhccC--cccc-cChHHhhccCCCeEECCCCC
Confidence 3321 235666666663 2331 12346667777777665543
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.14 E-value=9.4e-12 Score=134.57 Aligned_cols=210 Identities=18% Similarity=0.217 Sum_probs=142.2
Q ss_pred ccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccchhcCccCcEEeecc
Q 039519 395 RNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLVNLKCLNLQY 474 (647)
Q Consensus 395 ~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~ 474 (647)
-+|++|++++|++...|..+..+.+|+.|+++.| .+...|.+.+++.+|++|+|.+|.++.+|.++..+.+|++|++++
T Consensus 45 v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eeeEEeeccccccccCCchhhhHHHHhhcccchh-hHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccch
Confidence 3599999999999999988888899999999999 899999889999999999999999999999999999999999999
Q ss_pred cccCCcCchhhhcCCCCCcEEeccccCCC-ccccccc------cc-ccCCccccHHHhhCCCCCcEEEEEecchhhHHH-
Q 039519 475 MYNLNQFPRLVISAFSKLQVLRMFDCGGS-KIERLKS------NV-LFGGHQVLVEELIGMKYLMAVTITLKRLQALQE- 545 (647)
Q Consensus 475 ~~~l~~lp~~~i~~l~~L~~L~l~~~~~n-~~~~~~~------~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~- 545 (647)
| ....+|.- +..++.+..+..++ | ++..++. .. .....+..+.+...+++ .|++..|.+..+..
T Consensus 124 N-~f~~~Pl~-i~~lt~~~~~~~s~---N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls 196 (1081)
T KOG0618|consen 124 N-HFGPIPLV-IEVLTAEEELAASN---NEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLS 196 (1081)
T ss_pred h-ccCCCchh-HHhhhHHHHHhhhc---chhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhh
Confidence 8 66888874 66666666664443 3 1111111 00 11123444444555544 56666665541110
Q ss_pred ----HhhhhhhhhccceeeeeccCCCceEEEec--------ccccCCccEEEEcCCCCCCCChhhccccCCceEEeeccc
Q 039519 546 ----LLISQELQRCTQFLFLRCFNDSKSLDIFC--------LACLHNLNKLYVAGCKHLEDFQMIIQRSSLSVHNLFINK 613 (647)
Q Consensus 546 ----l~~~~~~~~~l~~l~L~~~~~L~~L~l~~--------~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~ 613 (647)
+..-.+....+..+.+++ ++|+.|.... .+...+|++++++.|.+...+.|++.+++|+.|+...|.
T Consensus 197 ~~~~l~~l~c~rn~ls~l~~~g-~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 197 NLANLEVLHCERNQLSELEISG-PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNR 275 (1081)
T ss_pred hccchhhhhhhhcccceEEecC-cchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchh
Confidence 000001111223333333 3444443321 455679999999998777777789999999999988753
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.10 E-value=1.2e-11 Score=121.71 Aligned_cols=233 Identities=18% Similarity=0.160 Sum_probs=145.6
Q ss_pred CccccccccEEEE--EeecccccccccCCCCcceeeEEeccCccccccCcc-ccccccCCCeeeecCCCCCcc-ccchhc
Q 039519 388 APEIQNWRNVRRM--SLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPL-GISTLVSLEHLDLSSTAITHL-PIDLQK 463 (647)
Q Consensus 388 ~~~~~~~~~l~~L--~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~L~~~~l~~l-p~~~~~ 463 (647)
.|.-..+++..-. +-..-.++++|..++. .-..++|..| .++.+|+ .|+.+++|+.|||++|.|+.+ |.+|..
T Consensus 37 CP~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~--~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G 113 (498)
T KOG4237|consen 37 CPAPCTCSDVEGGIVDCRGKGLTEVPANLPP--ETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG 113 (498)
T ss_pred CCCCcccCCCCCceEEccCCCcccCcccCCC--cceEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhh
Confidence 3444444443322 2233456666655432 3466889999 7888876 478999999999999999976 788999
Q ss_pred CccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhhH
Q 039519 464 LVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQAL 543 (647)
Q Consensus 464 l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l 543 (647)
+++|..|-+.++++++.+|.+.|+.|.+|+.|.+.-+..+- .....|..|++|..|.+..|.+..+
T Consensus 114 L~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~C--------------ir~~al~dL~~l~lLslyDn~~q~i 179 (498)
T KOG4237|consen 114 LASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINC--------------IRQDALRDLPSLSLLSLYDNKIQSI 179 (498)
T ss_pred hHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcc--------------hhHHHHHHhhhcchhcccchhhhhh
Confidence 99998888888669999999999999999988665443321 1222233444444444432222111
Q ss_pred HHHhhhhhhhhccceeeeec------c-----------------------------------------CCCceE------
Q 039519 544 QELLISQELQRCTQFLFLRC------F-----------------------------------------NDSKSL------ 570 (647)
Q Consensus 544 ~~l~~~~~~~~~l~~l~L~~------~-----------------------------------------~~L~~L------ 570 (647)
.+-. ...+..++.+++.. | ..++++
T Consensus 180 ~~~t--f~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~ 257 (498)
T KOG4237|consen 180 CKGT--FQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSS 257 (498)
T ss_pred cccc--ccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhcc
Confidence 1000 00000011111000 0 001111
Q ss_pred --------EEecccccCCccEEEEcCCCCCCCCh-hhccccCCceEEeecccccccccchhhhhhhcCCCCcccCCCCcc
Q 039519 571 --------DIFCLACLHNLNKLYVAGCKHLEDFQ-MIIQRSSLSVHNLFINKNYIHTNQLSILLGINRLPHFTKSNPYHP 641 (647)
Q Consensus 571 --------~l~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~ 641 (647)
+..||..+++|+.|+|++|.....-+ ||..+..++.|.|.. |.+....-..+.++..|+.|....+++-
T Consensus 258 ~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~--N~l~~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 258 EDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR--NKLEFVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred ccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc--chHHHHHHHhhhccccceeeeecCCeeE
Confidence 11238899999999999997766655 688889999999988 4566666667888888888776666543
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.01 E-value=1.3e-11 Score=126.70 Aligned_cols=193 Identities=21% Similarity=0.205 Sum_probs=152.9
Q ss_pred cccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccchhcCccCcEEeec
Q 039519 394 WRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLVNLKCLNLQ 473 (647)
Q Consensus 394 ~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~ 473 (647)
+......+++.|.+..+|.....+.+|..+.|+.| .+..+|..+++|..|.+|+|+.|.++.+|..+..|+ |+.|.++
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEe
Confidence 44566788999999999988777788899999999 888999999999999999999999999999998885 9999999
Q ss_pred ccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhhHHHHhhhhhhh
Q 039519 474 YMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQALQELLISQELQ 553 (647)
Q Consensus 474 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~ 553 (647)
+| +++.+|.. ++.+..|..|+. +.|++.+ .+..++++.+|+.|.+..|.+..+ +.....
T Consensus 152 NN-kl~~lp~~-ig~~~tl~~ld~---s~nei~s------------lpsql~~l~slr~l~vrRn~l~~l---p~El~~- 210 (722)
T KOG0532|consen 152 NN-KLTSLPEE-IGLLPTLAHLDV---SKNEIQS------------LPSQLGYLTSLRDLNVRRNHLEDL---PEELCS- 210 (722)
T ss_pred cC-ccccCCcc-cccchhHHHhhh---hhhhhhh------------chHHhhhHHHHHHHHHhhhhhhhC---CHHHhC-
Confidence 88 88999998 887777777644 4566544 445578888899888886654443 222221
Q ss_pred hccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChh----hccccCCceEEeecc
Q 039519 554 RCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQM----IIQRSSLSVHNLFIN 612 (647)
Q Consensus 554 ~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~----~~~l~~L~~L~L~~~ 612 (647)
-.|..|++++ +++.++++ +|..++.|++|.|.+|+ ++.||. -|...-.|+|+...|
T Consensus 211 LpLi~lDfSc-Nkis~iPv-~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 211 LPLIRLDFSC-NKISYLPV-DFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred Cceeeeeccc-Cceeecch-hhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 1467888874 88888886 59999999999999986 567774 256667899999887
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.01 E-value=2.1e-10 Score=118.32 Aligned_cols=38 Identities=29% Similarity=0.285 Sum_probs=16.2
Q ss_pred cccccCCCeeeecCCCCC-ccccchhcCcc---CcEEeeccc
Q 039519 438 ISTLVSLEHLDLSSTAIT-HLPIDLQKLVN---LKCLNLQYM 475 (647)
Q Consensus 438 ~~~L~~L~~L~L~~~~l~-~lp~~~~~l~~---L~~L~l~~~ 475 (647)
+..+++|++|++++|.+. ..+..+..+.+ |++|++++|
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~ 118 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNN 118 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCC
Confidence 334445555555544443 22233333332 555555444
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=4.3e-10 Score=102.81 Aligned_cols=138 Identities=24% Similarity=0.328 Sum_probs=47.8
Q ss_pred cccCccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccch-hc
Q 039519 385 LTEAPEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDL-QK 463 (647)
Q Consensus 385 ~~~~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~-~~ 463 (647)
++..+...++.+++.|+|.+|.|+.+...-..+++|+.|++++| .+.+++ .+..|++|++|++++|.|+.+++.+ ..
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~ 86 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKN 86 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CHHHHHH
T ss_pred cccccccccccccccccccccccccccchhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCccccchHHh
Confidence 44456666677889999999998877543235778899999999 787876 6888899999999999999887555 46
Q ss_pred CccCcEEeecccccCCcCch-hhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEE
Q 039519 464 LVNLKCLNLQYMYNLNQFPR-LVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTIT 536 (647)
Q Consensus 464 l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 536 (647)
+++|++|++++| .+..+.. ..++.+++|+.|++. +|.+... ......-+..+++|+.|+-.
T Consensus 87 lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~---~NPv~~~--------~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 87 LPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLE---GNPVCEK--------KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TT--EEE-TTS----SCCCCGGGGG-TT--EEE-T---T-GGGGS--------TTHHHHHHHH-TT-SEETTE
T ss_pred CCcCCEEECcCC-cCCChHHhHHHHcCCCcceeecc---CCcccch--------hhHHHHHHHHcChhheeCCE
Confidence 889999999887 5655543 114556666666555 3444221 22233446667777777654
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.91 E-value=1.2e-09 Score=112.65 Aligned_cols=207 Identities=18% Similarity=0.116 Sum_probs=115.1
Q ss_pred ccccEEEEEeecccccc-------cccCCCCcceeeEEeccCccccccCccccccccC---CCeeeecCCCCC-----cc
Q 039519 393 NWRNVRRMSLMKNKIEN-------LSELQPALTFFLFFNMSNNHLLWKLPLGISTLVS---LEHLDLSSTAIT-----HL 457 (647)
Q Consensus 393 ~~~~l~~L~l~~n~i~~-------l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~---L~~L~L~~~~l~-----~l 457 (647)
..++++.+.+.++.+.. ++..+..+++|+.|++++|......+..+..+.+ |++|++++|.+. .+
T Consensus 49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l 128 (319)
T cd00116 49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL 128 (319)
T ss_pred hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH
Confidence 44557777777666552 2222345667888888877333344445555544 888888888776 22
Q ss_pred ccchhcC-ccCcEEeecccccCC-----cCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCc
Q 039519 458 PIDLQKL-VNLKCLNLQYMYNLN-----QFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLM 531 (647)
Q Consensus 458 p~~~~~l-~~L~~L~l~~~~~l~-----~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 531 (647)
...+..+ ++|+.|++++| .+. .++.. +..+++|++|++.++.. .. .........+..+++|+
T Consensus 129 ~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l---~~-------~~~~~l~~~l~~~~~L~ 196 (319)
T cd00116 129 AKGLKDLPPALEKLVLGRN-RLEGASCEALAKA-LRANRDLKELNLANNGI---GD-------AGIRALAEGLKANCNLE 196 (319)
T ss_pred HHHHHhCCCCceEEEcCCC-cCCchHHHHHHHH-HHhCCCcCEEECcCCCC---ch-------HHHHHHHHHHHhCCCCC
Confidence 3345566 77888888887 333 22332 45566777776665332 10 00112233455567788
Q ss_pred EEEEEecchhhH--HHHhhhhhhhhccceeeeeccCCCceEEEecc-----cccCCccEEEEcCCCCCC--C--C-hhhc
Q 039519 532 AVTITLKRLQAL--QELLISQELQRCTQFLFLRCFNDSKSLDIFCL-----ACLHNLNKLYVAGCKHLE--D--F-QMII 599 (647)
Q Consensus 532 ~L~l~~~~~~~l--~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~-----~~l~~L~~L~L~~~~~~~--~--~-~~~~ 599 (647)
.|+++.+.++.. ..+.......++|+.|+++++ .+....+..+ ...+.|++|++++|.... . + ..+.
T Consensus 197 ~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~ 275 (319)
T cd00116 197 VLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLA 275 (319)
T ss_pred EEeccCCccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHh
Confidence 888876665422 222222223345666666653 2332111111 124789999999886531 1 1 1245
Q ss_pred cccCCceEEeecc
Q 039519 600 QRSSLSVHNLFIN 612 (647)
Q Consensus 600 ~l~~L~~L~L~~~ 612 (647)
.+++|++|++++|
T Consensus 276 ~~~~L~~l~l~~N 288 (319)
T cd00116 276 EKESLLELDLRGN 288 (319)
T ss_pred cCCCccEEECCCC
Confidence 6678999999885
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.80 E-value=4.1e-09 Score=112.09 Aligned_cols=108 Identities=28% Similarity=0.383 Sum_probs=82.2
Q ss_pred CccccccccEEEEEeecccccccccCCCCcc-eeeEEeccCccccccCccccccccCCCeeeecCCCCCccccchhcCcc
Q 039519 388 APEIQNWRNVRRMSLMKNKIENLSELQPALT-FFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLVN 466 (647)
Q Consensus 388 ~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~-~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~ 466 (647)
.......+.+..|++.+|.+..++.....++ +|+.|++++| .+..+|..+..+++|+.|++++|.+..+|...+.+++
T Consensus 109 ~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~ 187 (394)
T COG4886 109 ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSN 187 (394)
T ss_pred chhhhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCchhhhhhhhhhhhhh
Confidence 3344445678888888888888887766664 8888888888 7777777788888888888888888888877768888
Q ss_pred CcEEeecccccCCcCchhhhcCCCCCcEEecc
Q 039519 467 LKCLNLQYMYNLNQFPRLVISAFSKLQVLRMF 498 (647)
Q Consensus 467 L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~ 498 (647)
|+.|++++| .+..+|.. ++....|++|.+.
T Consensus 188 L~~L~ls~N-~i~~l~~~-~~~~~~L~~l~~~ 217 (394)
T COG4886 188 LNNLDLSGN-KISDLPPE-IELLSALEELDLS 217 (394)
T ss_pred hhheeccCC-ccccCchh-hhhhhhhhhhhhc
Confidence 888888887 77888874 4555567777554
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.77 E-value=2.4e-09 Score=97.88 Aligned_cols=123 Identities=25% Similarity=0.283 Sum_probs=43.8
Q ss_pred eecccccccccCCCCcceeeEEeccCccccccCccccc-cccCCCeeeecCCCCCccccchhcCccCcEEeecccccCCc
Q 039519 402 LMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGIS-TLVSLEHLDLSSTAITHLPIDLQKLVNLKCLNLQYMYNLNQ 480 (647)
Q Consensus 402 l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~-~L~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~ 480 (647)
+..+.|+..+.. -+...++.|+|++| .+..+. .++ .+.+|+.|++++|.|+.++ .+..+++|++|++++| .+.+
T Consensus 4 lt~~~i~~~~~~-~n~~~~~~L~L~~n-~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~ 78 (175)
T PF14580_consen 4 LTANMIEQIAQY-NNPVKLRELNLRGN-QISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISS 78 (175)
T ss_dssp -----------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S
T ss_pred cccccccccccc-cccccccccccccc-cccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCc
Confidence 344455555443 34456899999999 777764 666 6889999999999999987 6888999999999999 8899
Q ss_pred CchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhh
Q 039519 481 FPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQA 542 (647)
Q Consensus 481 lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 542 (647)
++.++...+++|++|++.+ |++.. ...+..|+.+++|+.|++.+|.+..
T Consensus 79 i~~~l~~~lp~L~~L~L~~---N~I~~----------l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 79 ISEGLDKNLPNLQELYLSN---NKISD----------LNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp -CHHHHHH-TT--EEE-TT---S---S----------CCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred cccchHHhCCcCCEEECcC---CcCCC----------hHHhHHHHcCCCcceeeccCCcccc
Confidence 9776335689999997764 55522 2334568889999999999887753
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.75 E-value=7.9e-09 Score=117.72 Aligned_cols=242 Identities=20% Similarity=0.193 Sum_probs=148.1
Q ss_pred cccCcc--ccccccEEEEEeecc-cccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCC-CCccccc
Q 039519 385 LTEAPE--IQNWRNVRRMSLMKN-KIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTA-ITHLPID 460 (647)
Q Consensus 385 ~~~~~~--~~~~~~l~~L~l~~n-~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~-l~~lp~~ 460 (647)
+...+. |..++.|++|+|++| .+.++|..+++|-+||||+++++ .+..+|.++++|..|.+|++..+. +..+|..
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i 637 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGI 637 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccch
Confidence 444444 777999999999966 56889999999999999999999 899999999999999999999985 4455655
Q ss_pred hhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcc---cccc---------ccc--ccCCccccHHHhhC
Q 039519 461 LQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKI---ERLK---------SNV--LFGGHQVLVEELIG 526 (647)
Q Consensus 461 ~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~---~~~~---------~~~--~~~~~~~~~~~l~~ 526 (647)
...|++|++|.+.... ........+.+.+|++|....+..... ..+- ... ........+..+..
T Consensus 638 ~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~ 715 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGS 715 (889)
T ss_pred hhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeeccccc
Confidence 5669999999997742 222222245555565555444332111 0000 000 11122344455677
Q ss_pred CCCCcEEEEEecchhhHHH--Hhhhhhh--hhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChh-hccc
Q 039519 527 MKYLMAVTITLKRLQALQE--LLISQEL--QRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQM-IIQR 601 (647)
Q Consensus 527 l~~L~~L~l~~~~~~~l~~--l~~~~~~--~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l 601 (647)
+.+|+.|.+.......... ....... ..++..+...+|..++.+.. ..-.++|+.|.+..|.....+.+ ...+
T Consensus 716 l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~--~~f~~~L~~l~l~~~~~~e~~i~~~k~~ 793 (889)
T KOG4658|consen 716 LGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW--LLFAPHLTSLSLVSCRLLEDIIPKLKAL 793 (889)
T ss_pred ccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccch--hhccCcccEEEEecccccccCCCHHHHh
Confidence 7888888888555432211 0000000 11233334444555555442 24578999999999987776654 5556
Q ss_pred cCCceEEeeccccccccc-chhhhhhhcCCCCc
Q 039519 602 SSLSVHNLFINKNYIHTN-QLSILLGINRLPHF 633 (647)
Q Consensus 602 ~~L~~L~L~~~~~~~~~~-~~~~l~~l~~L~~L 633 (647)
..++.+-+..+ + +... .+..+++++++..+
T Consensus 794 ~~l~~~i~~f~-~-~~~l~~~~~l~~l~~i~~~ 824 (889)
T KOG4658|consen 794 LELKELILPFN-K-LEGLRMLCSLGGLPQLYWL 824 (889)
T ss_pred hhcccEEeccc-c-cccceeeecCCCCceeEec
Confidence 66665555442 1 2222 34444555544443
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=3.1e-09 Score=106.36 Aligned_cols=105 Identities=26% Similarity=0.291 Sum_probs=67.7
Q ss_pred cccccEEEEEeeccccccccc--CCCCcceeeEEeccCccccccCc---cccccccCCCeeeecCCCCCccccch--hcC
Q 039519 392 QNWRNVRRMSLMKNKIENLSE--LQPALTFFLFFNMSNNHLLWKLP---LGISTLVSLEHLDLSSTAITHLPIDL--QKL 464 (647)
Q Consensus 392 ~~~~~l~~L~l~~n~i~~l~~--~~~~l~~L~~L~l~~~~~~~~lp---~~~~~L~~L~~L~L~~~~l~~lp~~~--~~l 464 (647)
+++++|+.+.|.++.+...+. ....+++++.|||+.| .++..- .-...|++|+.|+|+.|++....++. .-+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 456788888898887776553 3477788899999988 555432 22467888999999888776444322 246
Q ss_pred ccCcEEeecccccCC--cCchhhhcCCCCCcEEeccc
Q 039519 465 VNLKCLNLQYMYNLN--QFPRLVISAFSKLQVLRMFD 499 (647)
Q Consensus 465 ~~L~~L~l~~~~~l~--~lp~~~i~~l~~L~~L~l~~ 499 (647)
+.|+.|.|++| .+. .+-. ....+++|+.|.+..
T Consensus 197 ~~lK~L~l~~C-Gls~k~V~~-~~~~fPsl~~L~L~~ 231 (505)
T KOG3207|consen 197 SHLKQLVLNSC-GLSWKDVQW-ILLTFPSLEVLYLEA 231 (505)
T ss_pred hhhheEEeccC-CCCHHHHHH-HHHhCCcHHHhhhhc
Confidence 67788888887 332 1111 123455666664443
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.64 E-value=9.4e-09 Score=97.90 Aligned_cols=135 Identities=19% Similarity=0.216 Sum_probs=68.9
Q ss_pred cccCCCeeeecCCCCCccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccc
Q 039519 440 TLVSLEHLDLSSTAITHLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQV 519 (647)
Q Consensus 440 ~L~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~ 519 (647)
.++.|+.+||++|.|+++-+++.-+|.++.|++++| .+..+.. +..+.+|++|++++ |.+.++.
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n--La~L~~L~~LDLS~---N~Ls~~~---------- 345 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN--LAELPQLQLLDLSG---NLLAECV---------- 345 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehh--hhhcccceEeeccc---chhHhhh----------
Confidence 345566666666666666555555566666666665 4444443 44555555554432 3321110
Q ss_pred cHHHhhCCCCCcEEEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEE-EecccccCCccEEEEcCCCCCCCChh
Q 039519 520 LVEELIGMKYLMAVTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLD-IFCLACLHNLNKLYVAGCKHLEDFQM 597 (647)
Q Consensus 520 ~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~-l~~~~~l~~L~~L~L~~~~~~~~~~~ 597 (647)
..-..|.+.++|.+..|.+..+..+. .+-+|..|++++ ++++.++ ...+++++.|+.|.|.+|+..+.+.+
T Consensus 346 --Gwh~KLGNIKtL~La~N~iE~LSGL~----KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 346 --GWHLKLGNIKTLKLAQNKIETLSGLR----KLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred --hhHhhhcCEeeeehhhhhHhhhhhhH----hhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 00112344555555544443332221 122344444444 3444433 23477888888888888887666653
No 32
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.61 E-value=1.2e-06 Score=103.80 Aligned_cols=267 Identities=15% Similarity=0.157 Sum_probs=149.9
Q ss_pred CCCCCCCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC------CCCcceEEEEEEcC-ccCHHHHHHHHHHHhCCC
Q 039519 71 DQRPCEPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA------PNDFDVVIWMVVSK-DLQLEKIQERIGRRIGFL 143 (647)
Q Consensus 71 ~~~~~~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT------~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~ 143 (647)
+|+..+.+|-|+.-.+.+.+ ....+++.|+|++|.||| ...++.++|+++.. ..+...+...++..+...
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~ 85 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGKNNLGWYSLDESDNQPERFASYLIAALQQA 85 (903)
T ss_pred CCCCccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhCCCeEEEecCcccCCHHHHHHHHHHHHHHh
Confidence 34444667888765554432 135789999999999999 23344799999864 446666777777766421
Q ss_pred CcC-----------CCCCCHHHHHHHHHHHhc--cCCeeEEEecCCCccc---cccccCCCCCCCCCcEEEEecCchHHh
Q 039519 144 DES-----------WKNGSLEDKASDIFRILS--KKKLLLLLDDIWERVD---LTKVGVPFPDPENKSRIDFTTRFLEIC 207 (647)
Q Consensus 144 ~~~-----------~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~~---~~~l~~~~~~~~~gs~IivTTR~~~v~ 207 (647)
... ....+.......+-..+. +.+++|||||+...+. .+.+...++....+.++|||||...-.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~ 165 (903)
T PRK04841 86 TNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPL 165 (903)
T ss_pred cCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCC
Confidence 110 011122233333333332 6899999999976432 122222223334567888999974211
Q ss_pred h--hcc-cceeEecc------------cccc---CCCChHHHHHHHHHHhcCCchhHHHHhhHhhcCCCHhHHHHHHHHH
Q 039519 208 S--AMQ-AHEFLKVE------------DVLK---NHPNIPELARSVAQECAGLPLALITIGRVMACKKTPQEWHYAIQVL 269 (647)
Q Consensus 208 ~--~~~-~~~~~~~~------------~~~~---~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l 269 (647)
. .+. ......+. ..+. ...--.+.+.++.+.|+|.|+++..++..+...... -......+
T Consensus 166 ~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~--~~~~~~~~ 243 (903)
T PRK04841 166 GIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSS--LHDSARRL 243 (903)
T ss_pred chHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc--hhhhhHhh
Confidence 1 110 11112220 0010 112234567889999999999999998877542110 00101111
Q ss_pred hhcccCCCCC-CcchhhHHHH-hhcCCCchhhhhHHhhhcCCCCCCcccHHHHHHHhhhcCCccccCccchHHHHHHHHH
Q 039519 270 RISASEFPGM-GKEVYPLLKY-SYDSLPDETIRSCLLYCGLFPEDYRTRKSELIDCWIGEGFLDQYDRSGAYDEGYYIIG 347 (647)
Q Consensus 270 ~~~~~~~~~~-~~~i~~~l~~-sy~~L~~~~~k~~fl~~a~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~~~ 347 (647)
... ...+...+.- -++.||+ ..+.+++..|+++ .++.. +...- .. .+.+.+.++
T Consensus 244 -------~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~~-l~~~l-----~~-------~~~~~~~L~ 299 (903)
T PRK04841 244 -------AGINASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMNDA-LIVRV-----TG-------EENGQMRLE 299 (903)
T ss_pred -------cCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCHH-HHHHH-----cC-------CCcHHHHHH
Confidence 110 1245554433 4789999 8999999999987 33322 22211 11 122467799
Q ss_pred HHHHhcccc-cc--CCCeeEEe
Q 039519 348 ILLHACLLE-EE--WGDIGEEE 366 (647)
Q Consensus 348 ~L~~~~ll~-~~--~~~~~~mh 366 (647)
+|.+.+++. +. ....|+.|
T Consensus 300 ~l~~~~l~~~~~~~~~~~yr~H 321 (903)
T PRK04841 300 ELERQGLFIQRMDDSGEWFRYH 321 (903)
T ss_pred HHHHCCCeeEeecCCCCEEehh
Confidence 999999864 32 23468889
No 33
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.54 E-value=5.6e-06 Score=87.98 Aligned_cols=103 Identities=19% Similarity=0.122 Sum_probs=73.5
Q ss_pred CCcccchHHHHHHHHHhhh----CCceEEEEEccCccCCC----------CCC--cceEEEEEEcCccCHHHHHHHHHHH
Q 039519 76 EPTVGLESTFDKVRRCLRE----EQVGIIGLYGMGGLLGA----------PND--FDVVIWMVVSKDLQLEKIQERIGRR 139 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~----~~~~vi~I~G~gGiGKT----------~~~--F~~~~wv~~s~~~~~~~~~~~i~~~ 139 (647)
+.++||++++++|...+.. .....+.|+|.+|+||| ... .-..++|......+...++..++.+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 5689999999999998853 34456789999999999 111 1234555555556778899999999
Q ss_pred hCCCCcCCCCCCHHHHHHHHHHHhc--cCCeeEEEecCCCc
Q 039519 140 IGFLDESWKNGSLEDKASDIFRILS--KKKLLLLLDDIWER 178 (647)
Q Consensus 140 l~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~ 178 (647)
+..........+.++....+.+.+. ++..+||||+++..
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l 150 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYL 150 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHh
Confidence 8652211123356677777888775 35689999999863
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.53 E-value=6.1e-08 Score=103.10 Aligned_cols=190 Identities=25% Similarity=0.308 Sum_probs=135.5
Q ss_pred EEEeecccccccccCCCCcceeeEEeccCccccccCcccccccc-CCCeeeecCCCCCccccchhcCccCcEEeeccccc
Q 039519 399 RMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLV-SLEHLDLSSTAITHLPIDLQKLVNLKCLNLQYMYN 477 (647)
Q Consensus 399 ~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~-~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~ 477 (647)
.+.+..+.+..-......++.+..|++.+| .+..+|+..+.+. +|+.|++++|.+..+|..++.+++|+.|++++| .
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-D 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-h
Confidence 567777776443334456678999999999 8889998888885 999999999999999988999999999999999 8
Q ss_pred CCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecc-hhhHHHHhhhhhhhhcc
Q 039519 478 LNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKR-LQALQELLISQELQRCT 556 (647)
Q Consensus 478 l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~l~~l~~~~~~~~~l 556 (647)
+..+|.. .+.+.+|+.|++. .|++..+|.. ...+..|.+|.+..|. ...+.. ......+
T Consensus 175 l~~l~~~-~~~~~~L~~L~ls---~N~i~~l~~~------------~~~~~~L~~l~~~~N~~~~~~~~----~~~~~~l 234 (394)
T COG4886 175 LSDLPKL-LSNLSNLNNLDLS---GNKISDLPPE------------IELLSALEELDLSNNSIIELLSS----LSNLKNL 234 (394)
T ss_pred hhhhhhh-hhhhhhhhheecc---CCccccCchh------------hhhhhhhhhhhhcCCcceecchh----hhhcccc
Confidence 8999985 4578889888665 4666544432 2345567788887663 222221 2222234
Q ss_pred ceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChhhccccCCceEEeeccc
Q 039519 557 QFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQMIIQRSSLSVHNLFINK 613 (647)
Q Consensus 557 ~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~ 613 (647)
..+.+.+ +.+..+ ...++.+++|++|++++|. +..++.++.+.+|+.|+++++.
T Consensus 235 ~~l~l~~-n~~~~~-~~~~~~l~~l~~L~~s~n~-i~~i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 235 SGLELSN-NKLEDL-PESIGNLSNLETLDLSNNQ-ISSISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred cccccCC-ceeeec-cchhccccccceecccccc-ccccccccccCccCEEeccCcc
Confidence 4444322 222221 2336788899999999985 4555558999999999999853
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.53 E-value=4.6e-09 Score=108.36 Aligned_cols=189 Identities=24% Similarity=0.232 Sum_probs=142.4
Q ss_pred EEEeecccccccccCC--CCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccchhcCccCcEEeecccc
Q 039519 399 RMSLMKNKIENLSELQ--PALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLVNLKCLNLQYMY 476 (647)
Q Consensus 399 ~L~l~~n~i~~l~~~~--~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~ 476 (647)
+|.|++..+..+|..- ..++--...|++.| ....+|..++.+..|+.|.|..|.+..+|..++++..|.+|+|+.|
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N- 131 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRN-RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN- 131 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhcccc-ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-
Confidence 3556666666666543 45555667899999 7889999999999999999999999999999999999999999998
Q ss_pred cCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhhHHHHhhhhhhhhcc
Q 039519 477 NLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQALQELLISQELQRCT 556 (647)
Q Consensus 477 ~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l 556 (647)
.+..+|.. +..+ -|+.|-++ +|++ ...+.+++.+..|..|+.+.|.+.. ++.....+.+|
T Consensus 132 qlS~lp~~-lC~l-pLkvli~s---NNkl------------~~lp~~ig~~~tl~~ld~s~nei~s---lpsql~~l~sl 191 (722)
T KOG0532|consen 132 QLSHLPDG-LCDL-PLKVLIVS---NNKL------------TSLPEEIGLLPTLAHLDVSKNEIQS---LPSQLGYLTSL 191 (722)
T ss_pred hhhcCChh-hhcC-cceeEEEe---cCcc------------ccCCcccccchhHHHhhhhhhhhhh---chHHhhhHHHH
Confidence 78999997 5444 46766544 4655 4445556777788888888665544 45666667778
Q ss_pred ceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCCh-hhccccCCceEEeeccc
Q 039519 557 QFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQ-MIIQRSSLSVHNLFINK 613 (647)
Q Consensus 557 ~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~ 613 (647)
+.|.+.. +++.+|.-. +. --.|..|+++.|+ +..+| .|..|..|++|.|.+|+
T Consensus 192 r~l~vrR-n~l~~lp~E-l~-~LpLi~lDfScNk-is~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 192 RDLNVRR-NHLEDLPEE-LC-SLPLIRLDFSCNK-ISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred HHHHHhh-hhhhhCCHH-Hh-CCceeeeecccCc-eeecchhhhhhhhheeeeeccCC
Confidence 8777776 666666521 22 3358899998774 55555 69999999999999976
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.51 E-value=8.4e-09 Score=98.25 Aligned_cols=134 Identities=21% Similarity=0.246 Sum_probs=97.0
Q ss_pred cccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccchhcCccCcEEe
Q 039519 392 QNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLVNLKCLN 471 (647)
Q Consensus 392 ~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~ 471 (647)
..|+.|+.++|++|.|..+..+..-++.+++|++|+| .+..+. ++..|++|+.|||++|.++++-..-.++-|.++|.
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 4567788888998888888777555588888999988 565554 47788888888998888887654445677788888
Q ss_pred ecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhhH
Q 039519 472 LQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQAL 543 (647)
Q Consensus 472 l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l 543 (647)
|++| .+..+.. ++++-+|..|++. .|++.++ .....+++|++|+.+.+..|.+..+
T Consensus 359 La~N-~iE~LSG--L~KLYSLvnLDl~---~N~Ie~l----------deV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 359 LAQN-KIETLSG--LRKLYSLVNLDLS---SNQIEEL----------DEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhh-hHhhhhh--hHhhhhheecccc---ccchhhH----------HHhcccccccHHHHHhhcCCCcccc
Confidence 8887 6677765 6777777777555 3554222 2334477888888888887776554
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1.8e-08 Score=101.09 Aligned_cols=187 Identities=16% Similarity=0.114 Sum_probs=111.9
Q ss_pred cccccccEEEEEeeccccccccc---CCCCcceeeEEeccCccccccCccc--cccccCCCeeeecCCCCC--ccccchh
Q 039519 390 EIQNWRNVRRMSLMKNKIENLSE---LQPALTFFLFFNMSNNHLLWKLPLG--ISTLVSLEHLDLSSTAIT--HLPIDLQ 462 (647)
Q Consensus 390 ~~~~~~~l~~L~l~~n~i~~l~~---~~~~l~~L~~L~l~~~~~~~~lp~~--~~~L~~L~~L~L~~~~l~--~lp~~~~ 462 (647)
....+++++.|+|+.|-+.++-. ....|++|+.|+++.| .+.....+ -..+.+|+.|.|+.|+++ .+-....
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~ 219 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILL 219 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhhhhhheEEeccCCCCHHHHHHHHH
Confidence 34567899999999987765322 2377888999999998 44322222 246788999999999888 2323345
Q ss_pred cCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhh
Q 039519 463 KLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQA 542 (647)
Q Consensus 463 ~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 542 (647)
.+|+|..|+|.+|..+..-... ..-++.|+.|++. .|++-.+ ......+.++.|+.|+++.+++..
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs---~N~li~~----------~~~~~~~~l~~L~~Lnls~tgi~s 285 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATS-TKILQTLQELDLS---NNNLIDF----------DQGYKVGTLPGLNQLNLSSTGIAS 285 (505)
T ss_pred hCCcHHHhhhhcccccceecch-hhhhhHHhhcccc---CCccccc----------ccccccccccchhhhhccccCcch
Confidence 6889999999988422211111 2335556666554 4554222 122335667777777777555544
Q ss_pred HHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCC--CChhhccccCCceEEeecc
Q 039519 543 LQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLE--DFQMIIQRSSLSVHNLFIN 612 (647)
Q Consensus 543 l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~--~~~~~~~l~~L~~L~L~~~ 612 (647)
+...+ +..+.. ...+++|++|++..|+... .+-.+..+++|+.|.+..|
T Consensus 286 i~~~d----------------~~s~~k-----t~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 286 IAEPD----------------VESLDK-----THTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred hcCCC----------------ccchhh-----hcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 32111 111111 2457788888888876522 2223566677777776653
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.38 E-value=5.8e-07 Score=100.41 Aligned_cols=102 Identities=21% Similarity=0.296 Sum_probs=77.0
Q ss_pred cEEEEEeecccccc-cccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCC-ccccchhcCccCcEEeec
Q 039519 396 NVRRMSLMKNKIEN-LSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAIT-HLPIDLQKLVNLKCLNLQ 473 (647)
Q Consensus 396 ~l~~L~l~~n~i~~-l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~ 473 (647)
.++.|+|.+|.+.. +|..+.++++|+.|+|++|...+.+|..++.+++|++|+|++|.++ .+|..++++++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47778888888765 6666778888888888888555678888888888888888888887 778888888888888888
Q ss_pred ccccCCcCchhhhcC-CCCCcEEecc
Q 039519 474 YMYNLNQFPRLVISA-FSKLQVLRMF 498 (647)
Q Consensus 474 ~~~~l~~lp~~~i~~-l~~L~~L~l~ 498 (647)
+|.....+|.. ++. ..++..+++.
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~ 523 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFT 523 (623)
T ss_pred CCcccccCChH-HhhccccCceEEec
Confidence 88655677876 443 3345555444
No 39
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.33 E-value=7.5e-05 Score=78.51 Aligned_cols=102 Identities=14% Similarity=0.157 Sum_probs=72.2
Q ss_pred CCcccchHHHHHHHHHhhh----CCceEEEEEccCccCCC----------CCCc------ceEEEEEEcCccCHHHHHHH
Q 039519 76 EPTVGLESTFDKVRRCLRE----EQVGIIGLYGMGGLLGA----------PNDF------DVVIWMVVSKDLQLEKIQER 135 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~----~~~~vi~I~G~gGiGKT----------~~~F------~~~~wv~~s~~~~~~~~~~~ 135 (647)
+.++||++++++|...+.. .....+.|+|++|+||| .... -..+|+......+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 5689999999999998874 34567899999999999 1111 13566776666677889999
Q ss_pred HHHHhC---CCCcCCCCCCHHHHHHHHHHHhc--cCCeeEEEecCCCc
Q 039519 136 IGRRIG---FLDESWKNGSLEDKASDIFRILS--KKKLLLLLDDIWER 178 (647)
Q Consensus 136 i~~~l~---~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~ 178 (647)
|+.++. .... ....+..+....+.+.+. +++++||||+++.-
T Consensus 95 i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 95 LANQLRGSGEEVP-TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHhhcCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 999883 2211 122345556666666664 56789999999875
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.2e-07 Score=90.64 Aligned_cols=179 Identities=18% Similarity=0.110 Sum_probs=108.0
Q ss_pred ceeeEEeccCccccc--cCccccccccCCCeeeecCCCCC-ccccchhcCccCcEEeecccccCCcCchh-hhcCCCCCc
Q 039519 418 TFFLFFNMSNNHLLW--KLPLGISTLVSLEHLDLSSTAIT-HLPIDLQKLVNLKCLNLQYMYNLNQFPRL-VISAFSKLQ 493 (647)
Q Consensus 418 ~~L~~L~l~~~~~~~--~lp~~~~~L~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~-~i~~l~~L~ 493 (647)
+.|++|||+.. .++ .+-.-++.+.+|+-|.|.++.+. .+-..+.+-.+|+.|+|+.|..+.+..-. +++.++.|.
T Consensus 185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 46888999987 332 23334567788888889988887 55566777888999999998655554432 356777888
Q ss_pred EEeccccCCCcccccccccccCCccccHHHhhC-CCCCcEEEEEecchhhHH--HHhhhhhhhhccceeeeeccCCCceE
Q 039519 494 VLRMFDCGGSKIERLKSNVLFGGHQVLVEELIG-MKYLMAVTITLKRLQALQ--ELLISQELQRCTQFLFLRCFNDSKSL 570 (647)
Q Consensus 494 ~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~l~--~l~~~~~~~~~l~~l~L~~~~~L~~L 570 (647)
.|+++-|.... ...--...+ -++|..|++++..- ++. .+......-+++..|+|+.+..|+.-
T Consensus 264 ~LNlsWc~l~~-------------~~Vtv~V~hise~l~~LNlsG~rr-nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~ 329 (419)
T KOG2120|consen 264 ELNLSWCFLFT-------------EKVTVAVAHISETLTQLNLSGYRR-NLQKSHLSTLVRRCPNLVHLDLSDSVMLKND 329 (419)
T ss_pred hcCchHhhccc-------------hhhhHHHhhhchhhhhhhhhhhHh-hhhhhHHHHHHHhCCceeeeccccccccCch
Confidence 88777664411 010011111 13566666663210 000 11111122234445555544433331
Q ss_pred EEecccccCCccEEEEcCCCCCCCCh----hhccccCCceEEeeccc
Q 039519 571 DIFCLACLHNLNKLYVAGCKHLEDFQ----MIIQRSSLSVHNLFINK 613 (647)
Q Consensus 571 ~l~~~~~l~~L~~L~L~~~~~~~~~~----~~~~l~~L~~L~L~~~~ 613 (647)
-+..|-.++.|++|.|+.|+.+ +| -+...|.|.+|++.+|-
T Consensus 330 ~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 330 CFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 1122788999999999999753 33 26889999999999973
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.27 E-value=1.7e-07 Score=99.89 Aligned_cols=97 Identities=27% Similarity=0.347 Sum_probs=45.3
Q ss_pred cEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccchhcCccCcEEeeccc
Q 039519 396 NVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLVNLKCLNLQYM 475 (647)
Q Consensus 396 ~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~ 475 (647)
.+..+.+..|.+...-..+..+++|..|++.+| .+..+...+..+++|++|++++|.|+.+. .+..++.|+.|++++|
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN 150 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeecccc-chhhcccchhhhhcchheecccccccccc-chhhccchhhheeccC
Confidence 333333444444443233344455555555555 44444322445555555555555555543 3444455555555555
Q ss_pred ccCCcCchhhhcCCCCCcEEec
Q 039519 476 YNLNQFPRLVISAFSKLQVLRM 497 (647)
Q Consensus 476 ~~l~~lp~~~i~~l~~L~~L~l 497 (647)
.+..++. +..+.+|+.+++
T Consensus 151 -~i~~~~~--~~~l~~L~~l~l 169 (414)
T KOG0531|consen 151 -LISDISG--LESLKSLKLLDL 169 (414)
T ss_pred -cchhccC--CccchhhhcccC
Confidence 4444443 333444444433
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.20 E-value=2.2e-07 Score=99.09 Aligned_cols=105 Identities=29% Similarity=0.430 Sum_probs=82.3
Q ss_pred ccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccchhcCccCcEE
Q 039519 391 IQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLVNLKCL 470 (647)
Q Consensus 391 ~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~L~~L 470 (647)
+..+.++..|++..|.|..+...+..+++|++|++++| .+.++. .+..+..|+.|++++|.|+.++ .+..+++|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccc-cccccc-chhhccchhhheeccCcchhcc-CCccchhhhcc
Confidence 55667899999999999888775688899999999999 777775 6788888999999999998876 46668899999
Q ss_pred eecccccCCcCchhhhcCCCCCcEEeccc
Q 039519 471 NLQYMYNLNQFPRLVISAFSKLQVLRMFD 499 (647)
Q Consensus 471 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 499 (647)
++++| .+..+.......+.+++.+.+.+
T Consensus 168 ~l~~n-~i~~ie~~~~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 168 DLSYN-RIVDIENDELSELISLEELDLGG 195 (414)
T ss_pred cCCcc-hhhhhhhhhhhhccchHHHhccC
Confidence 99998 55666651025666777665554
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.20 E-value=1.1e-06 Score=65.88 Aligned_cols=56 Identities=36% Similarity=0.487 Sum_probs=37.1
Q ss_pred eeeEEeccCccccccCcc-ccccccCCCeeeecCCCCCccc-cchhcCccCcEEeeccc
Q 039519 419 FFLFFNMSNNHLLWKLPL-GISTLVSLEHLDLSSTAITHLP-IDLQKLVNLKCLNLQYM 475 (647)
Q Consensus 419 ~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~ 475 (647)
+|++|++++| .+..+|+ .|.++++|++|++++|.++.+| ..+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4666777777 5556553 4566777777777777777665 35567777777777765
No 44
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.20 E-value=0.00011 Score=73.66 Aligned_cols=154 Identities=14% Similarity=0.145 Sum_probs=86.1
Q ss_pred CCceEEEEEccCccCCC-------C--CCcce-EEEEEEcCccCHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHh-
Q 039519 95 EQVGIIGLYGMGGLLGA-------P--NDFDV-VIWMVVSKDLQLEKIQERIGRRIGFLDESWKNGSLEDKASDIFRIL- 163 (647)
Q Consensus 95 ~~~~vi~I~G~gGiGKT-------~--~~F~~-~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l- 163 (647)
.+..++.|+|.+|+||| . ..... .+|+ +....+..+++..|+..++... ...+.......+.+.+
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~-~~~~~~~~~~l~~i~~~lG~~~---~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKL-VNTRVDAEDLLRMVAADFGLET---EGRDKAALLRELEDFLI 116 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeee-eCCCCCHHHHHHHHHHHcCCCC---CCCCHHHHHHHHHHHHH
Confidence 44568999999999999 1 11121 2233 3344577889999999887643 2223333333343332
Q ss_pred ----ccCCeeEEEecCCCcc--ccccccCCC---CCCCCCcEEEEecCchHHhhhccc----------ceeEec------
Q 039519 164 ----SKKKLLLLLDDIWERV--DLTKVGVPF---PDPENKSRIDFTTRFLEICSAMQA----------HEFLKV------ 218 (647)
Q Consensus 164 ----~~~r~LlVlDdv~~~~--~~~~l~~~~---~~~~~gs~IivTTR~~~v~~~~~~----------~~~~~~------ 218 (647)
.+++.++|+||++... .++.+.... ........|++|.... ....+.. ...+.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 5788999999998743 344432211 1122233455555432 2211110 112222
Q ss_pred ----------cc-cccCCCCh-HHHHHHHHHHhcCCchhHHHHhhHh
Q 039519 219 ----------ED-VLKNHPNI-PELARSVAQECAGLPLALITIGRVM 253 (647)
Q Consensus 219 ----------~~-~~~~~~~~-~~~~~~i~~~c~glPLai~~~g~~l 253 (647)
.. .......+ ++..+.|++.++|.|..|..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 00 00111223 5788999999999999998888776
No 45
>PLN03150 hypothetical protein; Provisional
Probab=98.17 E-value=4.6e-06 Score=93.28 Aligned_cols=80 Identities=25% Similarity=0.403 Sum_probs=65.4
Q ss_pred eeeEEeccCccccccCccccccccCCCeeeecCCCCC-ccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEec
Q 039519 419 FFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAIT-HLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRM 497 (647)
Q Consensus 419 ~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l 497 (647)
.+..|+|++|...+.+|..++.|++|++|+|++|.+. .+|..++.+++|+.|+|++|.....+|.. ++.+++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 3677888888666678888888999999999999887 78888889999999999988555577876 788888888876
Q ss_pred cc
Q 039519 498 FD 499 (647)
Q Consensus 498 ~~ 499 (647)
.+
T Consensus 498 s~ 499 (623)
T PLN03150 498 NG 499 (623)
T ss_pred cC
Confidence 64
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.11 E-value=3.1e-06 Score=63.36 Aligned_cols=59 Identities=29% Similarity=0.381 Sum_probs=51.6
Q ss_pred ccEEEEEeecccccccccC-CCCcceeeEEeccCccccccCcc-ccccccCCCeeeecCCCC
Q 039519 395 RNVRRMSLMKNKIENLSEL-QPALTFFLFFNMSNNHLLWKLPL-GISTLVSLEHLDLSSTAI 454 (647)
Q Consensus 395 ~~l~~L~l~~n~i~~l~~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~L~~~~l 454 (647)
++|++|++.+|++..+|.. +.++++|++|++++| .+..+|+ .|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999999999875 488999999999999 6667664 689999999999999975
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.04 E-value=5.9e-06 Score=56.75 Aligned_cols=41 Identities=41% Similarity=0.571 Sum_probs=27.8
Q ss_pred cCCCeeeecCCCCCccccchhcCccCcEEeecccccCCcCch
Q 039519 442 VSLEHLDLSSTAITHLPIDLQKLVNLKCLNLQYMYNLNQFPR 483 (647)
Q Consensus 442 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~ 483 (647)
++|++|++++|+|+.+|..+++|++|++|++++| .+..++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 3677777777777777766777777777777777 5555554
No 48
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.04 E-value=8.5e-06 Score=79.63 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=28.5
Q ss_pred cccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 78 TVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 78 ~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
|+||++++++|.+.+..+....+.|+|..|+|||
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKT 34 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKT 34 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHH
Confidence 6899999999999998877889999999999999
No 49
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.03 E-value=3.6e-05 Score=79.39 Aligned_cols=252 Identities=15% Similarity=0.121 Sum_probs=119.6
Q ss_pred CCcccchHHHHHHHHHhhh-----CCceEEEEEccCccCCC------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE-----EQVGIIGLYGMGGLLGA------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLD 144 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~-----~~~~vi~I~G~gGiGKT------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 144 (647)
..|+|+++.++.+...+.. .....+.|+|++|+||| .......+....+........+..++..+....
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 104 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAILTNLEEGD 104 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHHHHHHhcccCC
Confidence 5689999999999887753 34567889999999999 111111111111111111122233333332110
Q ss_pred ----cCCCCCCHHHHHHHHHHHhccCCeeEEEecCCCccccccccCCCCCCCCCcEEEEecCchHHhhhccc--ceeEec
Q 039519 145 ----ESWKNGSLEDKASDIFRILSKKKLLLLLDDIWERVDLTKVGVPFPDPENKSRIDFTTRFLEICSAMQA--HEFLKV 218 (647)
Q Consensus 145 ----~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~~--~~~~~~ 218 (647)
+..+... ....+.+...+.+.+..+|+|+..+...+.. .++ ..+-|..||+...+...+.. ...+.+
T Consensus 105 vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l~---~~~li~at~~~~~l~~~L~sRf~~~~~l 177 (328)
T PRK00080 105 VLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DLP---PFTLIGATTRAGLLTSPLRDRFGIVQRL 177 (328)
T ss_pred EEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCccccceee---cCC---CceEEeecCCcccCCHHHHHhcCeeeec
Confidence 0001001 1223345555666677777777655433221 111 24567777775444322110 112222
Q ss_pred c------------cc--ccCCCChHHHHHHHHHHhcCCchhHHHHhhHhhcCCCHhHHHHHHHHHhhcccCCC-CCCcch
Q 039519 219 E------------DV--LKNHPNIPELARSVAQECAGLPLALITIGRVMACKKTPQEWHYAIQVLRISASEFP-GMGKEV 283 (647)
Q Consensus 219 ~------------~~--~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~~~~~-~~~~~i 283 (647)
. .. .....--++.+..|++.|+|.|-.+..+...+ ..|.... ...... ..-...
T Consensus 178 ~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~-----~~~~I~~~~v~~~ 246 (328)
T PRK00080 178 EFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRV------RDFAQVK-----GDGVITKEIADKA 246 (328)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHc-----CCCCCCHHHHHHH
Confidence 0 00 01112234678899999999994433333221 1221100 000000 000133
Q ss_pred hhHHHHhhcCCCchhhhhHHh-hhcCCCCCCcccHHHHHHHhhhcCCccccCccchHHHHHHHHH-HHHHhcccccc
Q 039519 284 YPLLKYSYDSLPDETIRSCLL-YCGLFPEDYRTRKSELIDCWIGEGFLDQYDRSGAYDEGYYIIG-ILLHACLLEEE 358 (647)
Q Consensus 284 ~~~l~~sy~~L~~~~~k~~fl-~~a~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~~~-~L~~~~ll~~~ 358 (647)
...+...+..|++ ..+..+. ....|..+ ++..+.+.... | .....+++.++ .|++.+|++..
T Consensus 247 l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g--------~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 247 LDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL---G--------EERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred HHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH---C--------CCcchHHHHhhHHHHHcCCcccC
Confidence 3445666778887 5555554 44555543 44444432221 1 11234445566 88999998754
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.02 E-value=5.4e-06 Score=81.40 Aligned_cols=92 Identities=18% Similarity=0.188 Sum_probs=55.5
Q ss_pred ccccccccEEEEEeecccccc-----cccCCCCcceeeEEeccCcccc----ccCccc-------cccccCCCeeeecCC
Q 039519 389 PEIQNWRNVRRMSLMKNKIEN-----LSELQPALTFFLFFNMSNNHLL----WKLPLG-------ISTLVSLEHLDLSST 452 (647)
Q Consensus 389 ~~~~~~~~l~~L~l~~n~i~~-----l~~~~~~l~~L~~L~l~~~~~~----~~lp~~-------~~~L~~L~~L~L~~~ 452 (647)
+.......++.++|++|.|.. +...+.+.+.|+..++++- +. ..+|+. +-+.++|++|+||.|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 344455678888888887643 2333355567777777764 22 223432 234567888888888
Q ss_pred CCC-ccc----cchhcCccCcEEeecccccCCcCc
Q 039519 453 AIT-HLP----IDLQKLVNLKCLNLQYMYNLNQFP 482 (647)
Q Consensus 453 ~l~-~lp----~~~~~l~~L~~L~l~~~~~l~~lp 482 (647)
-+. .-+ .-+.++..|++|.|.+| .+....
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~a 136 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEA 136 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcC-CCChhH
Confidence 554 222 23456778888888877 444433
No 51
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.93 E-value=0.00048 Score=70.37 Aligned_cols=251 Identities=17% Similarity=0.120 Sum_probs=120.7
Q ss_pred CCcccchHHHHHHHHHhhh-----CCceEEEEEccCccCCC------CCCcce-EEEEEEcCccCHHHHHHHHHHHhCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE-----EQVGIIGLYGMGGLLGA------PNDFDV-VIWMVVSKDLQLEKIQERIGRRIGFL 143 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~-----~~~~vi~I~G~gGiGKT------~~~F~~-~~wv~~s~~~~~~~~~~~i~~~l~~~ 143 (647)
..|||++..++++...+.. .....+.++|++|+||| ...+.. ...+..+.......+ ...+..++..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~~ 82 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDL-AAILTNLEEG 82 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhH-HHHHHhcccC
Confidence 4589999999999888863 34556889999999999 111111 112221111112222 2222333211
Q ss_pred C----cCCCCCCHHHHHHHHHHHhccCCeeEEEecCCCccccccccCCCCCCCCCcEEEEecCchHHhhhcc--cceeEe
Q 039519 144 D----ESWKNGSLEDKASDIFRILSKKKLLLLLDDIWERVDLTKVGVPFPDPENKSRIDFTTRFLEICSAMQ--AHEFLK 217 (647)
Q Consensus 144 ~----~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~--~~~~~~ 217 (647)
. +..+.-. .+..+.+...+.+.+..+|+|+..+...+.. .++ +.+-|.+||+...+...+. ....+.
T Consensus 83 ~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~sR~~~~~~ 155 (305)
T TIGR00635 83 DVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRDRFGIILR 155 (305)
T ss_pred CEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHHhhcceEEE
Confidence 1 0001111 1223456666777777788887766554432 122 2566777777654432210 111222
Q ss_pred cc------------ccc--cCCCChHHHHHHHHHHhcCCchhHHHHhhHhhcCCCHhHHHHHHHHHhhcccCCC-CCCcc
Q 039519 218 VE------------DVL--KNHPNIPELARSVAQECAGLPLALITIGRVMACKKTPQEWHYAIQVLRISASEFP-GMGKE 282 (647)
Q Consensus 218 ~~------------~~~--~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~~~~~-~~~~~ 282 (647)
+. ... ....--++.+..|++.|+|.|-.+..++..+ |..+. ..... ... ..-..
T Consensus 156 l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~-~~~~~--~it~~~v~~ 224 (305)
T TIGR00635 156 LEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQ-VRGQK--IINRDIALK 224 (305)
T ss_pred eCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHH-HcCCC--CcCHHHHHH
Confidence 20 000 1111224667889999999995554444322 11100 00000 000 00012
Q ss_pred hhhHHHHhhcCCCchhhhhHHh-hhcCCCCCCcccHHHHHHHhhhcCCccccCccchHHHHHHHHH-HHHHhcccccc
Q 039519 283 VYPLLKYSYDSLPDETIRSCLL-YCGLFPEDYRTRKSELIDCWIGEGFLDQYDRSGAYDEGYYIIG-ILLHACLLEEE 358 (647)
Q Consensus 283 i~~~l~~sy~~L~~~~~k~~fl-~~a~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~~~-~L~~~~ll~~~ 358 (647)
....+..+|..++. +.+..+. ..+.+. +..+....+.... | .....++..++ .|++++|++..
T Consensus 225 ~l~~l~~~~~~l~~-~~~~~L~al~~~~~-~~~~~~~~ia~~l---g--------~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 225 ALEMLMIDELGLDE-IDRKLLSVLIEQFQ-GGPVGLKTLAAAL---G--------EDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHHHhCCCCCCCCH-HHHHHHHHHHHHhC-CCcccHHHHHHHh---C--------CCcchHHHhhhHHHHHcCCcccC
Confidence 22224556777887 5555554 335554 2234333322211 1 11234556677 69999999755
No 52
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.91 E-value=0.00098 Score=74.14 Aligned_cols=102 Identities=13% Similarity=0.003 Sum_probs=66.7
Q ss_pred CCcccchHHHHHHHHHhhh----C-CceEEEEEccCccCCC---------------CCCcc--eEEEEEEcCccCHHHHH
Q 039519 76 EPTVGLESTFDKVRRCLRE----E-QVGIIGLYGMGGLLGA---------------PNDFD--VVIWMVVSKDLQLEKIQ 133 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~----~-~~~vi~I~G~gGiGKT---------------~~~F~--~~~wv~~s~~~~~~~~~ 133 (647)
+.++|||+++++|...|.. . ...++-|+|++|.||| ....+ .+++|....-.+...+.
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 4568999999999988864 2 3357789999999999 11222 24555555556788888
Q ss_pred HHHHHHhCCCCcCCCCCCHHHHHHHHHHHhcc---CCeeEEEecCCCc
Q 039519 134 ERIGRRIGFLDESWKNGSLEDKASDIFRILSK---KKLLLLLDDIWER 178 (647)
Q Consensus 134 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~---~r~LlVlDdv~~~ 178 (647)
..|..++..... .......+....+.+.+.. ...+||||+|+.-
T Consensus 835 qvI~qqL~g~~P-~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 835 QVLYKQLFNKKP-PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYL 881 (1164)
T ss_pred HHHHHHHcCCCC-CccccHHHHHHHHHhhhhcccccceEEEeehHhhh
Confidence 888888843321 1222344455555555422 2458999999853
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.91 E-value=2.4e-05 Score=80.57 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=27.6
Q ss_pred ceeeEEeccCccccccCccccccccCCCeeeecCC-CCCccccchhcCccCcEEeecccccCCcCc
Q 039519 418 TFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSST-AITHLPIDLQKLVNLKCLNLQYMYNLNQFP 482 (647)
Q Consensus 418 ~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~-~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp 482 (647)
.+++.|++++| .+..+| .+ ..+|+.|.+++| .++.+|..+. ++|+.|++++|..+..+|
T Consensus 52 ~~l~~L~Is~c-~L~sLP-~L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 52 RASGRLYIKDC-DIESLP-VL--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP 111 (426)
T ss_pred cCCCEEEeCCC-CCcccC-CC--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc
Confidence 34555555555 455554 11 123555555543 4445554332 355555555554444333
No 54
>PF05729 NACHT: NACHT domain
Probab=97.88 E-value=1.9e-05 Score=72.59 Aligned_cols=101 Identities=14% Similarity=0.178 Sum_probs=59.0
Q ss_pred eEEEEEccCccCCC-----------CCC-----cceEEEEEEcCccCHH---HHHHHHHHHhCCCCcCCCCCCHHHHHHH
Q 039519 98 GIIGLYGMGGLLGA-----------PND-----FDVVIWMVVSKDLQLE---KIQERIGRRIGFLDESWKNGSLEDKASD 158 (647)
Q Consensus 98 ~vi~I~G~gGiGKT-----------~~~-----F~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 158 (647)
+++.|+|.+|+||| ... +...+|++.+...... .+...|..+..... ..... .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~---~ 72 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE---L 72 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---H
Confidence 58899999999999 111 4567777765544322 44444444443211 11111 2
Q ss_pred HHHHh-ccCCeeEEEecCCCccc-cc--------c-ccCCCCC-CCCCcEEEEecCchHH
Q 039519 159 IFRIL-SKKKLLLLLDDIWERVD-LT--------K-VGVPFPD-PENKSRIDFTTRFLEI 206 (647)
Q Consensus 159 l~~~l-~~~r~LlVlDdv~~~~~-~~--------~-l~~~~~~-~~~gs~IivTTR~~~v 206 (647)
+...+ ..+++++|+|++++... .. . +...++. ...+++++||+|....
T Consensus 73 ~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~ 132 (166)
T PF05729_consen 73 LQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAF 132 (166)
T ss_pred HHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH
Confidence 22222 57899999999987533 11 1 2112222 3468999999998766
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.80 E-value=1.9e-05 Score=54.29 Aligned_cols=40 Identities=33% Similarity=0.458 Sum_probs=32.8
Q ss_pred ceeeEEeccCccccccCccccccccCCCeeeecCCCCCccc
Q 039519 418 TFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLP 458 (647)
Q Consensus 418 ~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp 458 (647)
++|++|++++| .+..+|+.+++|++|++|++++|.++.+|
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 36888999999 78888877999999999999999988775
No 56
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.78 E-value=0.00024 Score=78.10 Aligned_cols=269 Identities=16% Similarity=0.179 Sum_probs=143.7
Q ss_pred CCCCCCcccchHHHHHHHHHhhhC-CceEEEEEccCccCCC--CCC-------cceEEEEEEcCc-cCHHHHHHHHHHHh
Q 039519 72 QRPCEPTVGLESTFDKVRRCLREE-QVGIIGLYGMGGLLGA--PND-------FDVVIWMVVSKD-LQLEKIQERIGRRI 140 (647)
Q Consensus 72 ~~~~~~~vGr~~~~~~i~~~L~~~-~~~vi~I~G~gGiGKT--~~~-------F~~~~wv~~s~~-~~~~~~~~~i~~~l 140 (647)
|.+..+.|-|. ++.+.|... +.+.+.|.-++|.||| -.. =..+.|+++..+ -++..+...++..+
T Consensus 15 P~~~~~~v~R~----rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al 90 (894)
T COG2909 15 PVRPDNYVVRP----RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAAL 90 (894)
T ss_pred CCCcccccccH----HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHH
Confidence 33335556664 456666654 7899999999999999 112 247899998665 46888888888887
Q ss_pred CCCCcC-----------CCCCCHHHHHHHHHHHhc--cCCeeEEEecCCCccc---cccccCCCCCCCCCcEEEEecCch
Q 039519 141 GFLDES-----------WKNGSLEDKASDIFRILS--KKKLLLLLDDIWERVD---LTKVGVPFPDPENKSRIDFTTRFL 204 (647)
Q Consensus 141 ~~~~~~-----------~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~~---~~~l~~~~~~~~~gs~IivTTR~~ 204 (647)
+...+. .+..+...+...+..-+. .++..+||||-.-..+ -+.+...+.....+-..|||||+.
T Consensus 91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~r 170 (894)
T COG2909 91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSR 170 (894)
T ss_pred HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccC
Confidence 632211 122333444444444443 3689999999864322 122222233344678899999986
Q ss_pred HHhhhcc---cceeEeccccccCCCChHHHHHHHHHHhcCCchhHHHHhhHhhcCCCHhHHHHHHHHHhhccc-------
Q 039519 205 EICSAMQ---AHEFLKVEDVLKNHPNIPELARSVAQECAGLPLALITIGRVMACKKTPQEWHYAIQVLRISAS------- 274 (647)
Q Consensus 205 ~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~~------- 274 (647)
.-+.... .+...++... .-.=-.+.+.+..+..+|+|+--..+..... ..+.|-.++.-..-...
T Consensus 171 P~l~la~lRlr~~llEi~~~--~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~---~teGW~~al~L~aLa~~~~~~~~q 245 (894)
T COG2909 171 PQLGLARLRLRDELLEIGSE--ELRFDTEEAAAFLNDRGSLPLDAADLKALYD---RTEGWAAALQLIALALRNNTSAEQ 245 (894)
T ss_pred CCCcccceeehhhHHhcChH--hhcCChHHHHHHHHHcCCCCCChHHHHHHHh---hcccHHHHHHHHHHHccCCCcHHH
Confidence 4422110 0111111000 0000012334444444445544444433332 23444443322111111
Q ss_pred ---CCCCCCcchhh-HHHHhhcCCCchhhhhHHhhhcCCCCCCcccHHHHHHHhhhcCCccccCccchHHHHHHHHHHHH
Q 039519 275 ---EFPGMGKEVYP-LLKYSYDSLPDETIRSCLLYCGLFPEDYRTRKSELIDCWIGEGFLDQYDRSGAYDEGYYIIGILL 350 (647)
Q Consensus 275 ---~~~~~~~~i~~-~l~~sy~~L~~~~~k~~fl~~a~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~~~~L~ 350 (647)
.+.+..+.|.+ ...--++.||+ ++|.+++-+|+++.=. .+|+..- +.++.+..++++|.
T Consensus 246 ~~~~LsG~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f~----~eL~~~L------------tg~~ng~amLe~L~ 308 (894)
T COG2909 246 SLRGLSGAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRFN----DELCNAL------------TGEENGQAMLEELE 308 (894)
T ss_pred HhhhccchHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHhh----HHHHHHH------------hcCCcHHHHHHHHH
Confidence 00011111211 22334788999 8999999999986311 2333322 22345677899999
Q ss_pred Hhcccccc---CCCeeEEe
Q 039519 351 HACLLEEE---WGDIGEEE 366 (647)
Q Consensus 351 ~~~ll~~~---~~~~~~mh 366 (647)
.++|+-.. ...-|+.|
T Consensus 309 ~~gLFl~~Ldd~~~WfryH 327 (894)
T COG2909 309 RRGLFLQRLDDEGQWFRYH 327 (894)
T ss_pred hCCCceeeecCCCceeehh
Confidence 99987532 55679998
No 57
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=1.9e-06 Score=82.51 Aligned_cols=197 Identities=16% Similarity=0.116 Sum_probs=118.4
Q ss_pred cEEEEEeecccccc--cccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCC-CCCcc--ccchhcCccCcEE
Q 039519 396 NVRRMSLMKNKIEN--LSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSST-AITHL--PIDLQKLVNLKCL 470 (647)
Q Consensus 396 ~l~~L~l~~n~i~~--l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~-~l~~l--p~~~~~l~~L~~L 470 (647)
.++.|+|++..|+. +-..++.+..|+.|.+.++..-..+-..+.+=.+|+.|+|+.| .+++. .--+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 57788888877654 2222355667778888888433334445666678899999887 67633 2345688889999
Q ss_pred eecccccCCcCchhhhcC-CCCCcEEeccccCCCcccccccccccCCccccHHHh-hCCCCCcEEEEEecc-hhhHHHHh
Q 039519 471 NLQYMYNLNQFPRLVISA-FSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEEL-IGMKYLMAVTITLKR-LQALQELL 547 (647)
Q Consensus 471 ~l~~~~~l~~lp~~~i~~-l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~-~~~l~~l~ 547 (647)
+|+.|......-.-++.. -.+|..|+++++..|-. ...+..| ..+++|..|+++.+. +++ ...
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~------------~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~ 331 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ------------KSHLSTLVRRCPNLVHLDLSDSVMLKN--DCF 331 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh------------hhHHHHHHHhCCceeeeccccccccCc--hHH
Confidence 998884333332211222 23677888888776432 2222223 467888888888433 222 122
Q ss_pred hhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChh-hccccCCce
Q 039519 548 ISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQM-IIQRSSLSV 606 (647)
Q Consensus 548 ~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~ 606 (647)
......+.|+.+.++.|-.+---.+-.+...++|.+|++.||---+...- ...+++|+.
T Consensus 332 ~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 332 QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI 391 (419)
T ss_pred HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence 22344556777777776543221122267899999999999843333332 345666643
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.70 E-value=3.6e-06 Score=71.47 Aligned_cols=109 Identities=20% Similarity=0.322 Sum_probs=64.8
Q ss_pred cEEEEEeecccccccccCC---CCcceeeEEeccCccccccCccccc-cccCCCeeeecCCCCCccccchhcCccCcEEe
Q 039519 396 NVRRMSLMKNKIENLSELQ---PALTFFLFFNMSNNHLLWKLPLGIS-TLVSLEHLDLSSTAITHLPIDLQKLVNLKCLN 471 (647)
Q Consensus 396 ~l~~L~l~~n~i~~l~~~~---~~l~~L~~L~l~~~~~~~~lp~~~~-~L~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~ 471 (647)
.+..++|+++++-.+++.. ....+|...++++| .++++|+.|. +.+.++.|++++|.|+.+|..+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 3444556666554444332 44456666777777 6667776665 33467777777777777777777777777777
Q ss_pred ecccccCCcCchhhhcCCCCCcEEeccccCCCccccccc
Q 039519 472 LQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKS 510 (647)
Q Consensus 472 l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~ 510 (647)
++.| .+...|.- +..+. .|.+.+...|....++.
T Consensus 107 l~~N-~l~~~p~v-i~~L~---~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 107 LRFN-PLNAEPRV-IAPLI---KLDMLDSPENARAEIDV 140 (177)
T ss_pred cccC-ccccchHH-HHHHH---hHHHhcCCCCccccCcH
Confidence 7776 55666653 43333 33344555555544443
No 59
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.67 E-value=0.00017 Score=64.50 Aligned_cols=113 Identities=19% Similarity=0.071 Sum_probs=62.9
Q ss_pred ccchHHHHHHHHHhhhCCceEEEEEccCccCCC-------CCC---cceEEEEEEcCccCHHHHHHHHHHHhCCCCcCCC
Q 039519 79 VGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA-------PND---FDVVIWMVVSKDLQLEKIQERIGRRIGFLDESWK 148 (647)
Q Consensus 79 vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT-------~~~---F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 148 (647)
+|++..++++...+.....+.+.|+|.+|+||| ... -..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF--------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh---------
Confidence 478888999998887766778999999999999 111 2345555554432221111111000
Q ss_pred CCCHHHHHHHHHHHhccCCeeEEEecCCCc-----cccccccCCCCCC---CCCcEEEEecCchH
Q 039519 149 NGSLEDKASDIFRILSKKKLLLLLDDIWER-----VDLTKVGVPFPDP---ENKSRIDFTTRFLE 205 (647)
Q Consensus 149 ~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~-----~~~~~l~~~~~~~---~~gs~IivTTR~~~ 205 (647)
............++.++|+||++.. ..+.......... ..+.+||+||....
T Consensus 72 -----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111222456789999999853 1222221222111 35778888887643
No 60
>PTZ00202 tuzin; Provisional
Probab=97.66 E-value=0.001 Score=68.52 Aligned_cols=90 Identities=19% Similarity=0.149 Sum_probs=61.5
Q ss_pred CCCcccchHHHHHHHHHhhh---CCceEEEEEccCccCCC--------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCC
Q 039519 75 CEPTVGLESTFDKVRRCLRE---EQVGIIGLYGMGGLLGA--------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFL 143 (647)
Q Consensus 75 ~~~~vGr~~~~~~i~~~L~~---~~~~vi~I~G~gGiGKT--------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 143 (647)
.+.|+||+.++.++...|.+ +..+++.|.|++|+||| ..+ ...++.... +..++++.++.+|+..
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~--~~qL~vNpr--g~eElLr~LL~ALGV~ 336 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG--MPAVFVDVR--GTEDTLRSVVKALGVP 336 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC--ceEEEECCC--CHHHHHHHHHHHcCCC
Confidence 37899999999999999864 23568899999999999 222 222222222 6799999999999974
Q ss_pred CcCCCCCCHHHHHHHHHHHh-----c-cCCeeEEE
Q 039519 144 DESWKNGSLEDKASDIFRIL-----S-KKKLLLLL 172 (647)
Q Consensus 144 ~~~~~~~~~~~~~~~l~~~l-----~-~~r~LlVl 172 (647)
. ...-.++...|.+.+ . +++.+||+
T Consensus 337 p----~~~k~dLLrqIqeaLl~~~~e~GrtPVLII 367 (550)
T PTZ00202 337 N----VEACGDLLDFISEACRRAKKMNGETPLLVL 367 (550)
T ss_pred C----cccHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3 223344555555544 2 45666665
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.66 E-value=7.7e-05 Score=76.90 Aligned_cols=82 Identities=24% Similarity=0.331 Sum_probs=57.4
Q ss_pred ccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCC-CCCccccchhcCccCcE
Q 039519 391 IQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSST-AITHLPIDLQKLVNLKC 469 (647)
Q Consensus 391 ~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~-~l~~lp~~~~~l~~L~~ 469 (647)
+..+.++++|++++|.+..+|..+ .+|+.|.++++..+..+|..+. .+|++|++++| .+..+|.+ |+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~LP---~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPVLP---NELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCCCC---CCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cce
Confidence 344578889999999888887322 3578888888767778886553 58999999988 78788864 555
Q ss_pred Eeeccc--ccCCcCch
Q 039519 470 LNLQYM--YNLNQFPR 483 (647)
Q Consensus 470 L~l~~~--~~l~~lp~ 483 (647)
|++..+ ..+..+|.
T Consensus 117 L~L~~n~~~~L~~LPs 132 (426)
T PRK15386 117 LEIKGSATDSIKNVPN 132 (426)
T ss_pred EEeCCCCCcccccCcc
Confidence 666553 22444444
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.62 E-value=3.3e-05 Score=86.26 Aligned_cols=102 Identities=24% Similarity=0.274 Sum_probs=49.9
Q ss_pred eeeEEeccCcccc-ccCccccc-cccCCCeeeecCCCCC--ccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcE
Q 039519 419 FFLFFNMSNNHLL-WKLPLGIS-TLVSLEHLDLSSTAIT--HLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQV 494 (647)
Q Consensus 419 ~L~~L~l~~~~~~-~~lp~~~~-~L~~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~ 494 (647)
+|++|+++|...+ ...|..++ -||+|+.|.+++-.+. ++-.-..++|||..||++++ ++..+.. ++++++|+.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~G--IS~LknLq~ 199 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNLSG--ISRLKNLQV 199 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCcHH--HhccccHHH
Confidence 4555555554221 12223333 3555666655554332 22223345566666666665 5555532 566666666
Q ss_pred EeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEE
Q 039519 495 LRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTIT 536 (647)
Q Consensus 495 L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 536 (647)
|.+.+... .....+.+|..|++|+.|+++
T Consensus 200 L~mrnLe~-------------e~~~~l~~LF~L~~L~vLDIS 228 (699)
T KOG3665|consen 200 LSMRNLEF-------------ESYQDLIDLFNLKKLRVLDIS 228 (699)
T ss_pred HhccCCCC-------------CchhhHHHHhcccCCCeeecc
Confidence 65554433 123344455556666666665
No 63
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.61 E-value=8.8e-05 Score=65.22 Aligned_cols=103 Identities=14% Similarity=0.126 Sum_probs=69.3
Q ss_pred ceEEEEEccCccCCC-------CCC--------cceEEEEEEcCccCHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHH
Q 039519 97 VGIIGLYGMGGLLGA-------PND--------FDVVIWMVVSKDLQLEKIQERIGRRIGFLDESWKNGSLEDKASDIFR 161 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT-------~~~--------F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 161 (647)
-+++.|+|.+|+||| +.. -..++|+.+....+...+.+.|+..++.... ...+..+..+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK--SRQTSDELRSLLID 81 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS--STS-HHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc--ccCCHHHHHHHHHH
Confidence 468899999999999 111 3467799988888999999999999987653 23567888888999
Q ss_pred HhccCCe-eEEEecCCCc---cccccccCCCCCCCCCcEEEEecCc
Q 039519 162 ILSKKKL-LLLLDDIWER---VDLTKVGVPFPDPENKSRIDFTTRF 203 (647)
Q Consensus 162 ~l~~~r~-LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IivTTR~ 203 (647)
.+...+. +||+|+++.- ..++.+..... ..+.++|+..+.
T Consensus 82 ~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 8877655 9999999764 22333322222 445566665543
No 64
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.60 E-value=8.6e-05 Score=69.66 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=23.2
Q ss_pred CcccchHHHHHHHHHhh---hCCceEEEEEccCccCCC
Q 039519 77 PTVGLESTFDKVRRCLR---EEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 77 ~~vGr~~~~~~i~~~L~---~~~~~vi~I~G~gGiGKT 111 (647)
.||||+++++++...+. ....+.+.|+|.+|+|||
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT 38 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKT 38 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHH
Confidence 37999999999999993 245789999999999999
No 65
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=7.6e-06 Score=78.48 Aligned_cols=227 Identities=14% Similarity=0.044 Sum_probs=104.8
Q ss_pred EEEEEeecccccccccC--C-CCcceeeEEeccCccccccCcc---ccccccCCCeeeecCCCCCccccch-hcCccCcE
Q 039519 397 VRRMSLMKNKIENLSEL--Q-PALTFFLFFNMSNNHLLWKLPL---GISTLVSLEHLDLSSTAITHLPIDL-QKLVNLKC 469 (647)
Q Consensus 397 l~~L~l~~n~i~~l~~~--~-~~l~~L~~L~l~~~~~~~~lp~---~~~~L~~L~~L~L~~~~l~~lp~~~-~~l~~L~~ 469 (647)
+..|.+.++.|...... + ...+.++.+||.+| .+....+ -..+|++|++|+|+.|.+..--.+. ..+.+|+.
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 33455555555443222 2 44467788888888 4544322 2357888888888888665222222 24567888
Q ss_pred EeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhhHHHHhhh
Q 039519 470 LNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQALQELLIS 549 (647)
Q Consensus 470 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~ 549 (647)
|-|.++..-..-..++...++.++.|++++.+.-++ ++..+-. .. --+.+++|+...+...........
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~-n~Dd~c~---e~-------~s~~v~tlh~~~c~~~~w~~~~~l 194 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQL-NLDDNCI---ED-------WSTEVLTLHQLPCLEQLWLNKNKL 194 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhh-ccccccc---cc-------cchhhhhhhcCCcHHHHHHHHHhH
Confidence 888775211111122244555556665554221111 0100000 00 001233333332222222222222
Q ss_pred hhhhhccceeeeeccCCCceEEE-ecccccCCccEEEEcCCCCCCC--ChhhccccCCceEEeeccccc--ccccc--hh
Q 039519 550 QELQRCTQFLFLRCFNDSKSLDI-FCLACLHNLNKLYVAGCKHLED--FQMIIQRSSLSVHNLFINKNY--IHTNQ--LS 622 (647)
Q Consensus 550 ~~~~~~l~~l~L~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~~~~~--~~~~~~l~~L~~L~L~~~~~~--~~~~~--~~ 622 (647)
....+++..+.+..+ -|+++.- ..+..++.+..|+|..++.-.. +..+..++.|..|.++++|-. +++.. .-
T Consensus 195 ~r~Fpnv~sv~v~e~-PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~l 273 (418)
T KOG2982|consen 195 SRIFPNVNSVFVCEG-PLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFL 273 (418)
T ss_pred HhhcccchheeeecC-cccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEE
Confidence 222334444444432 2333321 1255666666777766543221 223566677777777776511 11111 11
Q ss_pred hhhhhcCCCCcccC
Q 039519 623 ILLGINRLPHFTKS 636 (647)
Q Consensus 623 ~l~~l~~L~~L~~~ 636 (647)
.++.+++++.|+.+
T Consensus 274 lIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 274 LIARLTKVQVLNGS 287 (418)
T ss_pred EEeeccceEEecCc
Confidence 34556666666554
No 66
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.53 E-value=1.4e-05 Score=68.07 Aligned_cols=92 Identities=15% Similarity=0.195 Sum_probs=80.3
Q ss_pred ccccEEEEEeecccccccccCC-CCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccchhcCccCcEEe
Q 039519 393 NWRNVRRMSLMKNKIENLSELQ-PALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLVNLKCLN 471 (647)
Q Consensus 393 ~~~~l~~L~l~~n~i~~l~~~~-~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~ 471 (647)
.-..+...+|++|.+..+|..+ .+.+..+.|+|++| .+..+|..+..++.|+.|+++.|.+...|.-+..|.+|-.|+
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 3357888999999999998877 55578899999999 899999999999999999999999999999898999999999
Q ss_pred ecccccCCcCchhhh
Q 039519 472 LQYMYNLNQFPRLVI 486 (647)
Q Consensus 472 l~~~~~l~~lp~~~i 486 (647)
..+| ....+|-.++
T Consensus 130 s~~n-a~~eid~dl~ 143 (177)
T KOG4579|consen 130 SPEN-ARAEIDVDLF 143 (177)
T ss_pred CCCC-ccccCcHHHh
Confidence 9887 6677776533
No 67
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.53 E-value=1.8e-06 Score=92.04 Aligned_cols=128 Identities=23% Similarity=0.315 Sum_probs=76.4
Q ss_pred cccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCcccc-chhcCccCcEEee
Q 039519 394 WRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPI-DLQKLVNLKCLNL 472 (647)
Q Consensus 394 ~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l 472 (647)
|..|...+.++|.+..+..++.-++.|+.|+|++| .+.+.- .+..|++|++|||++|.+..+|. +...+. |+.|++
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 44566666777776666555555566777777777 454543 56667777777777777777663 122333 777777
Q ss_pred cccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecch
Q 039519 473 QYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRL 540 (647)
Q Consensus 473 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 540 (647)
++| -+.++-+ +.++.+|+.|++++ |-+. .-..+.-|..|..|+.|++.+|.+
T Consensus 240 rnN-~l~tL~g--ie~LksL~~LDlsy---Nll~----------~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNN-ALTTLRG--IENLKSLYGLDLSY---NLLS----------EHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccc-HHHhhhh--HHhhhhhhccchhH---hhhh----------cchhhhHHHHHHHHHHHhhcCCcc
Confidence 776 5566665 66677777765553 3221 112223355556666666666654
No 68
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.49 E-value=5.8e-05 Score=74.31 Aligned_cols=184 Identities=17% Similarity=0.070 Sum_probs=110.0
Q ss_pred ceeeEEeccCccccccCccc----cccccCCCeeeecCCCCCcc--------------ccchhcCccCcEEeecccccCC
Q 039519 418 TFFLFFNMSNNHLLWKLPLG----ISTLVSLEHLDLSSTAITHL--------------PIDLQKLVNLKCLNLQYMYNLN 479 (647)
Q Consensus 418 ~~L~~L~l~~~~~~~~lp~~----~~~L~~L~~L~L~~~~l~~l--------------p~~~~~l~~L~~L~l~~~~~l~ 479 (647)
++|++||||+|-+-..-++. +.+...|+.|.|.+|.+... -..+++-++|+++....| .+.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rle 170 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLE 170 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccc
Confidence 36777777777322222222 34567777777777766522 112344568888888877 555
Q ss_pred cCchh----hhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhhHHH--Hhhhhhhh
Q 039519 480 QFPRL----VISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQALQE--LLISQELQ 553 (647)
Q Consensus 480 ~lp~~----~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~--l~~~~~~~ 553 (647)
.-+.. .+...+.|+.+.+...+...- ........+.++++|++|++.-|-++.-.. +....+.+
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~e----------G~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~ 240 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPE----------GVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW 240 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCc----------hhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc
Confidence 55432 244556777776665433211 012345678899999999999776654332 23333455
Q ss_pred hccceeeeeccCCCceEEEec-----ccccCCccEEEEcCCCCCCCCh-----hhccccCCceEEeeccc
Q 039519 554 RCTQFLFLRCFNDSKSLDIFC-----LACLHNLNKLYVAGCKHLEDFQ-----MIIQRSSLSVHNLFINK 613 (647)
Q Consensus 554 ~~l~~l~L~~~~~L~~L~l~~-----~~~l~~L~~L~L~~~~~~~~~~-----~~~~l~~L~~L~L~~~~ 613 (647)
++|+.+++++|. |+.=--.. -...++|+.|.+.+|.....-- ++...|.|..|+|++|.
T Consensus 241 ~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 241 PHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred chheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 677777777762 22211000 3447899999999986543211 35668899999999953
No 69
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.47 E-value=7.7e-06 Score=87.32 Aligned_cols=85 Identities=24% Similarity=0.154 Sum_probs=42.9
Q ss_pred HhhCCCCCcEEEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCC--CChhhcc
Q 039519 523 ELIGMKYLMAVTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLE--DFQMIIQ 600 (647)
Q Consensus 523 ~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~--~~~~~~~ 600 (647)
.+..+++|++|++++|.+..+..+....+ .|..|.|++ +-|++|. ++.++.+|+.|+|++|-+.+ .+.+++.
T Consensus 204 ~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc---~L~~L~lrn-N~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLws 277 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSYNCLRHVPQLSMVGC---KLQLLNLRN-NALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWS 277 (1096)
T ss_pred HHHhcccccccccccchhccccccchhhh---hheeeeecc-cHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHH
Confidence 45556666666666555554443332222 244444444 3333332 25556666666666553332 2334555
Q ss_pred ccCCceEEeeccc
Q 039519 601 RSSLSVHNLFINK 613 (647)
Q Consensus 601 l~~L~~L~L~~~~ 613 (647)
|..|+.|+|.|||
T Consensus 278 Ls~L~~L~LeGNP 290 (1096)
T KOG1859|consen 278 LSSLIVLWLEGNP 290 (1096)
T ss_pred HHHHHHHhhcCCc
Confidence 6666666666644
No 70
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=2.1e-05 Score=75.60 Aligned_cols=198 Identities=21% Similarity=0.195 Sum_probs=115.1
Q ss_pred cccEEEEEeecccccccccC---CCCcceeeEEeccCccc---cccCccccccccCCCeeeecCCCCC--ccccchhcCc
Q 039519 394 WRNVRRMSLMKNKIENLSEL---QPALTFFLFFNMSNNHL---LWKLPLGISTLVSLEHLDLSSTAIT--HLPIDLQKLV 465 (647)
Q Consensus 394 ~~~l~~L~l~~n~i~~l~~~---~~~l~~L~~L~l~~~~~---~~~lp~~~~~L~~L~~L~L~~~~l~--~lp~~~~~l~ 465 (647)
.+.++.++|..|.|..+... ..+|+.|++|+++.|.. ++.+| -.+.+|++|-|.++.+. ..-..+..+|
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 46888999999999875543 38889999999999932 33333 35678999999998665 6667778899
Q ss_pred cCcEEeecccccCCcC--chhhhcCCC-CCcEEeccccCCCcccccccccccCCccccHHHhh-CCCCCcEEEEEecchh
Q 039519 466 NLKCLNLQYMYNLNQF--PRLVISAFS-KLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELI-GMKYLMAVTITLKRLQ 541 (647)
Q Consensus 466 ~L~~L~l~~~~~l~~l--p~~~i~~l~-~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~ 541 (647)
.++.|.++.| ++..+ .+.-+.... .+.+|+...|... .......++ ..+++..+-+--+.+.
T Consensus 147 ~vtelHmS~N-~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~-------------~w~~~~~l~r~Fpnv~sv~v~e~PlK 212 (418)
T KOG2982|consen 147 KVTELHMSDN-SLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ-------------LWLNKNKLSRIFPNVNSVFVCEGPLK 212 (418)
T ss_pred hhhhhhhccc-hhhhhccccccccccchhhhhhhcCCcHHH-------------HHHHHHhHHhhcccchheeeecCccc
Confidence 9999999887 33322 222122222 4555555544320 111111121 2344544444433332
Q ss_pred hHHHHhhhhhhhhccceeeeeccCCCceEE-EecccccCCccEEEEcCCCCCCCChh-------hccccCCceEEee
Q 039519 542 ALQELLISQELQRCTQFLFLRCFNDSKSLD-IFCLACLHNLNKLYVAGCKHLEDFQM-------IIQRSSLSVHNLF 610 (647)
Q Consensus 542 ~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~-l~~~~~l~~L~~L~L~~~~~~~~~~~-------~~~l~~L~~L~L~ 610 (647)
....- ......+.+..|.|+. +++.+.. ++.+..++.|+.|.+.+++.+..+.. ++.|++++.|+=+
T Consensus 213 ~~s~e-k~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 213 TESSE-KGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred chhhc-ccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 22110 0011112233333333 3333322 22377889999999999887655431 5788999888744
No 71
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.26 E-value=0.00032 Score=63.98 Aligned_cols=126 Identities=25% Similarity=0.302 Sum_probs=77.9
Q ss_pred EEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccchhc-CccCcEEeeccc
Q 039519 397 VRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQK-LVNLKCLNLQYM 475 (647)
Q Consensus 397 l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~-l~~L~~L~l~~~ 475 (647)
-+.+++.+.++..+...-.-+..+..+||++| .+..++ .+..++.|++|.|.+|+|+.+-+.+.. +++|..|.|.+|
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdN-dl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDN-DLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccccccccccccchhhccccccccceeccccc-chhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 44455555544332221011235667888888 666665 677888899999999999888666654 567899999887
Q ss_pred ccCCcCch-hhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEE
Q 039519 476 YNLNQFPR-LVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTIT 536 (647)
Q Consensus 476 ~~l~~lp~-~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 536 (647)
++.++.+ .-...++.|++|.+.+ |+.... ......-+..+++|+.|+..
T Consensus 99 -si~~l~dl~pLa~~p~L~~Ltll~---Npv~~k--------~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 99 -SIQELGDLDPLASCPKLEYLTLLG---NPVEHK--------KNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred -chhhhhhcchhccCCccceeeecC---Cchhcc--------cCceeEEEEecCcceEeehh
Confidence 6666543 0135567777776664 332111 11222235677888888876
No 72
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0025 Score=66.04 Aligned_cols=101 Identities=18% Similarity=0.221 Sum_probs=76.5
Q ss_pred CCcccchHHHHHHHHHhhh----CCceEEEEEccCccCCC----------CCCc-ce-EEEEEEcCccCHHHHHHHHHHH
Q 039519 76 EPTVGLESTFDKVRRCLRE----EQVGIIGLYGMGGLLGA----------PNDF-DV-VIWMVVSKDLQLEKIQERIGRR 139 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~----~~~~vi~I~G~gGiGKT----------~~~F-~~-~~wv~~s~~~~~~~~~~~i~~~ 139 (647)
+.+.+||++++++...|.. ....-+.|+|.+|+||| .... .. ++.|.+-...+..+++..|+++
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 4488999999999988764 33334889999999999 1111 11 7888888888999999999999
Q ss_pred hCCCCcCCCCCCHHHHHHHHHHHhc--cCCeeEEEecCCCc
Q 039519 140 IGFLDESWKNGSLEDKASDIFRILS--KKKLLLLLDDIWER 178 (647)
Q Consensus 140 l~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~ 178 (647)
++... .......+..+.+.+.+. ++.++||||+++..
T Consensus 97 ~~~~p--~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L 135 (366)
T COG1474 97 LGKVP--LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDAL 135 (366)
T ss_pred cCCCC--CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhh
Confidence 97322 134567777888888885 47899999999864
No 73
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.13 E-value=0.00051 Score=67.14 Aligned_cols=80 Identities=13% Similarity=0.069 Sum_probs=53.0
Q ss_pred CceEEEEEccCccCCC-----------CCCcceEEEEEEcCc--cCHHHHHHHHHHHhCCCCcCCCCCC------HHHHH
Q 039519 96 QVGIIGLYGMGGLLGA-----------PNDFDVVIWMVVSKD--LQLEKIQERIGRRIGFLDESWKNGS------LEDKA 156 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT-----------~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~ 156 (647)
....++|+|.+|+||| ..+|+..+|+.+... +++.++++.+...+-... .+... .....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~--~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIAST--FDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEec--CCCCHHHHHHHHHHHH
Confidence 4568999999999999 457899999997776 799999999933321111 01111 11122
Q ss_pred HHHHHH-hccCCeeEEEecCCC
Q 039519 157 SDIFRI-LSKKKLLLLLDDIWE 177 (647)
Q Consensus 157 ~~l~~~-l~~~r~LlVlDdv~~ 177 (647)
...... -.++++++++|++..
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHH
Confidence 222222 247999999999965
No 74
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.08 E-value=0.0019 Score=64.80 Aligned_cols=108 Identities=17% Similarity=0.227 Sum_probs=74.3
Q ss_pred CCcccchHHHHHHHHHhhhCC---ceEEEEEccCccCCC---CCCc----ceEEEEEEcCccCHHHHHHHHHHHhCCCCc
Q 039519 76 EPTVGLESTFDKVRRCLREEQ---VGIIGLYGMGGLLGA---PNDF----DVVIWMVVSKDLQLEKIQERIGRRIGFLDE 145 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~---~~vi~I~G~gGiGKT---~~~F----~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 145 (647)
+.+.+||..+..+..++.+.. .+.|-|+|-+|.||| ++.| ...+|+++-+-|..+-+...|+.+....+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~ 85 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADK 85 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCC
Confidence 567899999999999997643 345578999999999 4444 256999999999999999999999852221
Q ss_pred -CCC-C---CCHHHHHHHHHH--Hhc--cCCeeEEEecCCCcccccc
Q 039519 146 -SWK-N---GSLEDKASDIFR--ILS--KKKLLLLLDDIWERVDLTK 183 (647)
Q Consensus 146 -~~~-~---~~~~~~~~~l~~--~l~--~~r~LlVlDdv~~~~~~~~ 183 (647)
... . ....+....+.+ ... ++.++||||+++.-.+.+.
T Consensus 86 dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a 132 (438)
T KOG2543|consen 86 DGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDA 132 (438)
T ss_pred chhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccch
Confidence 111 1 111222222333 111 3589999999987666544
No 75
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.08 E-value=0.0006 Score=64.98 Aligned_cols=205 Identities=18% Similarity=0.156 Sum_probs=118.8
Q ss_pred cccccEEEEEeecccccc-----cccCCCCcceeeEEeccCcccccc----Cc-------cccccccCCCeeeecCCCCC
Q 039519 392 QNWRNVRRMSLMKNKIEN-----LSELQPALTFFLFFNMSNNHLLWK----LP-------LGISTLVSLEHLDLSSTAIT 455 (647)
Q Consensus 392 ~~~~~l~~L~l~~n~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~----lp-------~~~~~L~~L~~L~L~~~~l~ 455 (647)
..+..+..++|++|.|.. +...+.+-.+|+..+++.- +.+. +| +.+-++++|+..+||.|-+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 345688999999998854 3333455578888888865 3322 23 23467899999999999766
Q ss_pred -ccccc----hhcCccCcEEeecccccCCcCchhhhc----------CCCCCcEEeccccCCCcccccccccccCCcccc
Q 039519 456 -HLPID----LQKLVNLKCLNLQYMYNLNQFPRLVIS----------AFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVL 520 (647)
Q Consensus 456 -~lp~~----~~~l~~L~~L~l~~~~~l~~lp~~~i~----------~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~ 520 (647)
+.|+. +++-+.|.+|.+++| .+..+..+-|+ +..+=..|....|..|.+.+.+. ...
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~-------~~~ 177 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK-------ELS 177 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH-------HHH
Confidence 55543 457789999999988 66666544333 22222333444777777644332 112
Q ss_pred HHHhhCCCCCcEEEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEec--------------ccccCCccEEEE
Q 039519 521 VEELIGMKYLMAVTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFC--------------LACLHNLNKLYV 586 (647)
Q Consensus 521 ~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~--------------~~~l~~L~~L~L 586 (647)
...|..-.+|+.+.+..|++..- ....|-.+.+.+|.+|+.|++.. +..-+.|+.|.+
T Consensus 178 a~~l~sh~~lk~vki~qNgIrpe--------gv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l 249 (388)
T COG5238 178 AALLESHENLKEVKIQQNGIRPE--------GVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL 249 (388)
T ss_pred HHHHHhhcCceeEEeeecCcCcc--------hhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence 22344446788888887765321 11122333444455555555532 344455777777
Q ss_pred cCCCCCCCCh--h---hc--cccCCceEEeeccc
Q 039519 587 AGCKHLEDFQ--M---II--QRSSLSVHNLFINK 613 (647)
Q Consensus 587 ~~~~~~~~~~--~---~~--~l~~L~~L~L~~~~ 613 (647)
..|.....-. . |. .-|+|..|-..+|.
T Consensus 250 nDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 250 NDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred cchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence 7774332111 1 21 34667777766643
No 76
>PF13173 AAA_14: AAA domain
Probab=96.96 E-value=0.0004 Score=60.77 Aligned_cols=93 Identities=14% Similarity=0.104 Sum_probs=59.3
Q ss_pred ceEEEEEccCccCCC-------CCCc--ceEEEEEEcCccCHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHhccCC
Q 039519 97 VGIIGLYGMGGLLGA-------PNDF--DVVIWMVVSKDLQLEKIQERIGRRIGFLDESWKNGSLEDKASDIFRILSKKK 167 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT-------~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r 167 (647)
.+++.|.|+-|+||| +... ..++++...+........ .+ ..+.+.+....++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~------------------~~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLAD------------------PD-LLEYFLELIKPGK 62 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhh------------------hh-hHHHHHHhhccCC
Confidence 368999999999999 2222 445666554432211000 00 2233344444578
Q ss_pred eeEEEecCCCccccccccCCCCCCCCCcEEEEecCchHHhh
Q 039519 168 LLLLLDDIWERVDLTKVGVPFPDPENKSRIDFTTRFLEICS 208 (647)
Q Consensus 168 ~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~ 208 (647)
.+|+||++....+|......+.+.+...+|++|+.+.....
T Consensus 63 ~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~ 103 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLS 103 (128)
T ss_pred cEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHh
Confidence 89999999988888776555555555679999999877753
No 77
>PRK04195 replication factor C large subunit; Provisional
Probab=96.93 E-value=0.021 Score=62.14 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=30.7
Q ss_pred CCcccchHHHHHHHHHhhh---C-CceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE---E-QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~---~-~~~vi~I~G~gGiGKT 111 (647)
..++|.++.++++.+++.. + ..+.+-|+|.+|+|||
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKT 53 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKT 53 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHH
Confidence 4579999999999998874 1 2678999999999999
No 78
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.91 E-value=0.00042 Score=65.96 Aligned_cols=105 Identities=24% Similarity=0.282 Sum_probs=49.3
Q ss_pred ccEEEEEeecccccccccCCCCcceeeEEeccCc--cccccCccccccccCCCeeeecCCCCCc---cccchhcCccCcE
Q 039519 395 RNVRRMSLMKNKIENLSELQPALTFFLFFNMSNN--HLLWKLPLGISTLVSLEHLDLSSTAITH---LPIDLQKLVNLKC 469 (647)
Q Consensus 395 ~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~--~~~~~lp~~~~~L~~L~~L~L~~~~l~~---lp~~~~~l~~L~~ 469 (647)
.++..|++.+..++.+.. ++.|++|+.|.++.| .....++....++++|++|++++|+++- ++ .+.++.+|..
T Consensus 43 ~~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhh
Confidence 344445554444443322 255555666666665 3333344334444666666666665442 22 2344555555
Q ss_pred EeecccccCCcCc---hhhhcCCCCCcEEeccccCC
Q 039519 470 LNLQYMYNLNQFP---RLVISAFSKLQVLRMFDCGG 502 (647)
Q Consensus 470 L~l~~~~~l~~lp---~~~i~~l~~L~~L~l~~~~~ 502 (647)
|++.+|.. ..+. ...+.-+++|..|+-.++..
T Consensus 121 Ldl~n~~~-~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 121 LDLFNCSV-TNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hhcccCCc-cccccHHHHHHHHhhhhccccccccCC
Confidence 55555522 2222 12234455555555444433
No 79
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.91 E-value=0.00057 Score=76.57 Aligned_cols=46 Identities=20% Similarity=0.093 Sum_probs=27.5
Q ss_pred ccccCCccEEEEcCCCCCCCCh-------hhccccCCceEEeecccccccccchh
Q 039519 575 LACLHNLNKLYVAGCKHLEDFQ-------MIIQRSSLSVHNLFINKNYIHTNQLS 622 (647)
Q Consensus 575 ~~~l~~L~~L~L~~~~~~~~~~-------~~~~l~~L~~L~L~~~~~~~~~~~~~ 622 (647)
+-+|++|+.||++.-....... .-..||+|+.||.|+ +.+....+.
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg--Tdi~~~~le 268 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG--TDINEEILE 268 (699)
T ss_pred HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC--cchhHHHHH
Confidence 4567788888887654433321 123588888888887 444433333
No 80
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.87 E-value=0.003 Score=65.07 Aligned_cols=82 Identities=12% Similarity=0.028 Sum_probs=53.4
Q ss_pred CceEEEEEccCccCCC-----------CCCcceEEEEEEcCc--cCHHHHHHHHHHHhCCCCcCCCCCCHHHH----HHH
Q 039519 96 QVGIIGLYGMGGLLGA-----------PNDFDVVIWMVVSKD--LQLEKIQERIGRRIGFLDESWKNGSLEDK----ASD 158 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT-----------~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~----~~~ 158 (647)
.-..++|+|.+|+||| ..+|+..+||.+.+. .++.++++.+...+-...-.......... .+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 4457899999999999 446999999999866 78999999995543222100011111111 112
Q ss_pred HHHH-hccCCeeEEEecCCC
Q 039519 159 IFRI-LSKKKLLLLLDDIWE 177 (647)
Q Consensus 159 l~~~-l~~~r~LlVlDdv~~ 177 (647)
.... -.+++++|++|.+..
T Consensus 247 Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHcCCCeEEEEEChhH
Confidence 2222 257999999999964
No 81
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.83 E-value=0.0027 Score=65.08 Aligned_cols=80 Identities=11% Similarity=0.066 Sum_probs=52.8
Q ss_pred CceEEEEEccCccCCC-----------CCCcceEEEEEEcCcc--CHHHHHHHHHHHhCCCCcCCCCCCHH------HHH
Q 039519 96 QVGIIGLYGMGGLLGA-----------PNDFDVVIWMVVSKDL--QLEKIQERIGRRIGFLDESWKNGSLE------DKA 156 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT-----------~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~------~~~ 156 (647)
.-...+|+|.+|+||| ..+|+.++||.+.+.+ ++.++++.+...+-.. .++..... ...
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~s--t~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAS--TFDEPAERHVQVAEMVI 245 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEE--CCCCCHHHHHHHHHHHH
Confidence 3456789999999999 4589999999998887 7888888887322111 11111111 111
Q ss_pred HHHHHH-hccCCeeEEEecCCC
Q 039519 157 SDIFRI-LSKKKLLLLLDDIWE 177 (647)
Q Consensus 157 ~~l~~~-l~~~r~LlVlDdv~~ 177 (647)
+.-+.. -.+++++|++|++..
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHH
Confidence 111111 257999999999964
No 82
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.77 E-value=0.0056 Score=62.88 Aligned_cols=36 Identities=3% Similarity=0.030 Sum_probs=30.3
Q ss_pred CCcccchHHHHHHHHHhhhCCc-eEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQV-GIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~-~vi~I~G~gGiGKT 111 (647)
..++|.++..+.+..++..+.. .++-++|.+|+|||
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT 57 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKT 57 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHH
Confidence 5579999999999999887653 56777999999999
No 83
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.75 E-value=0.0033 Score=57.56 Aligned_cols=105 Identities=16% Similarity=0.204 Sum_probs=70.3
Q ss_pred eEEeccCccccccCccccc-cccCCCeeeecCCCCCccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccc
Q 039519 421 LFFNMSNNHLLWKLPLGIS-TLVSLEHLDLSSTAITHLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFD 499 (647)
Q Consensus 421 ~~L~l~~~~~~~~lp~~~~-~L~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 499 (647)
+.+++.+. .+...- ..+ .+.+...+||++|.+..++ .+..+++|.+|.+++| .+..|.+.+-.-+++|+.|.+.+
T Consensus 22 ~e~~LR~l-kip~ie-nlg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGL-KIPVIE-NLGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccc-cccchh-hccccccccceecccccchhhcc-cCCCccccceEEecCC-cceeeccchhhhccccceEEecC
Confidence 45677766 221111 122 3456788999999888776 5778899999999988 78888887445566789887765
Q ss_pred cCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhh
Q 039519 500 CGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQA 542 (647)
Q Consensus 500 ~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 542 (647)
|.+..+ ..+..+..+++|+.|.+-.|..+.
T Consensus 98 ---Nsi~~l----------~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 98 ---NSIQEL----------GDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred ---cchhhh----------hhcchhccCCccceeeecCCchhc
Confidence 333221 222336677888888887776554
No 84
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.66 E-value=0.0011 Score=63.29 Aligned_cols=83 Identities=24% Similarity=0.359 Sum_probs=52.4
Q ss_pred CCcceeeEEeccCccccccCccccccccCCCeeeecCC--CCC-ccccchhcCccCcEEeecccccCC---cCchhhhcC
Q 039519 415 PALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSST--AIT-HLPIDLQKLVNLKCLNLQYMYNLN---QFPRLVISA 488 (647)
Q Consensus 415 ~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~--~l~-~lp~~~~~l~~L~~L~l~~~~~l~---~lp~~~i~~ 488 (647)
..+..|..|++.+. .+.++- .+-.|++|++|.++.| ++. .++....++++|++|++++| .+. ++++ ...
T Consensus 40 d~~~~le~ls~~n~-gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p--l~~ 114 (260)
T KOG2739|consen 40 DEFVELELLSVINV-GLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP--LKE 114 (260)
T ss_pred ccccchhhhhhhcc-ceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch--hhh
Confidence 33445566666666 444442 5566778888888888 554 66655666788888888887 333 3333 455
Q ss_pred CCCCcEEeccccCC
Q 039519 489 FSKLQVLRMFDCGG 502 (647)
Q Consensus 489 l~~L~~L~l~~~~~ 502 (647)
+.+|..|++++|+.
T Consensus 115 l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 115 LENLKSLDLFNCSV 128 (260)
T ss_pred hcchhhhhcccCCc
Confidence 66667777776665
No 85
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.61 E-value=0.022 Score=63.32 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=30.5
Q ss_pred CCcccchHHHHHHHHHhhhCC-ceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQ-VGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~-~~vi~I~G~gGiGKT 111 (647)
..+||.+..++.|.+.+..++ ...+-++|..|+|||
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKT 52 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKT 52 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHH
Confidence 557999999999999988765 345679999999999
No 86
>COG3903 Predicted ATPase [General function prediction only]
Probab=96.58 E-value=0.0023 Score=65.11 Aligned_cols=207 Identities=14% Similarity=0.183 Sum_probs=121.4
Q ss_pred CceEEEEEccCccCCC---------CCCcc-eEEEEEEcCccCHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHhcc
Q 039519 96 QVGIIGLYGMGGLLGA---------PNDFD-VVIWMVVSKDLQLEKIQERIGRRIGFLDESWKNGSLEDKASDIFRILSK 165 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT---------~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 165 (647)
..+-+.++|.|||||| ...|. .+.++....--|...+.-.+...++... .+-+.....+..+..+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-----~~g~~~~~~~~~~~~~ 87 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAHAASEYADGVAFVDLAPITDPALVFPTLAGALGLHV-----QPGDSAVDTLVRRIGD 87 (414)
T ss_pred hhheeeeeccCccceehhhhhhHhHhhhcccceeeeeccccCchhHhHHHHHhhccccc-----ccchHHHHHHHHHHhh
Confidence 4578999999999999 45565 5556666655566666666666566532 2223334456677778
Q ss_pred CCeeEEEecCCCccc-cccccCCCCCCCCCcEEEEecCchHHhhhcccceeEec--------------------cccccC
Q 039519 166 KKLLLLLDDIWERVD-LTKVGVPFPDPENKSRIDFTTRFLEICSAMQAHEFLKV--------------------EDVLKN 224 (647)
Q Consensus 166 ~r~LlVlDdv~~~~~-~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~~~~~~~~--------------------~~~~~~ 224 (647)
+|.++|+||..+..+ .......+-.....-+|+.|+|...... .+..+.+ ...+--
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~---ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA---GEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc---ccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 999999999865321 1111111112222345777887654321 1111111 111111
Q ss_pred CCChHHHHHHHHHHhcCCchhHHHHhhHhhcCCCHhHHHHH----HHHHhhcccCCC-CCCcchhhHHHHhhcCCCchhh
Q 039519 225 HPNIPELARSVAQECAGLPLALITIGRVMACKKTPQEWHYA----IQVLRISASEFP-GMGKEVYPLLKYSYDSLPDETI 299 (647)
Q Consensus 225 ~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~----~~~l~~~~~~~~-~~~~~i~~~l~~sy~~L~~~~~ 299 (647)
...-...+.+|.++..|.|++|..+++..+. ....+-... ...+... .... --+......+..||.-|.. -.
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~s-l~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtg-we 241 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRS-LSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTG-WE 241 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHh-cCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhh-HH
Confidence 2233567788999999999999999998887 443332221 1112211 1111 1112567788999999988 77
Q ss_pred hhHHhhhcCCCCCC
Q 039519 300 RSCLLYCGLFPEDY 313 (647)
Q Consensus 300 k~~fl~~a~fp~~~ 313 (647)
+.-|..++.|.-.+
T Consensus 242 ~~~~~rLa~~~g~f 255 (414)
T COG3903 242 RALFGRLAVFVGGF 255 (414)
T ss_pred HHHhcchhhhhhhh
Confidence 77888887776444
No 87
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.43 E-value=0.018 Score=61.32 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=30.3
Q ss_pred CCcccchHHHHH---HHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDK---VRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~---i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
..+||++..+.. +.+.+..+....+.++|.+|+|||
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKT 50 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKT 50 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHH
Confidence 568999888766 778787777778889999999999
No 88
>PRK06893 DNA replication initiation factor; Validated
Probab=96.36 E-value=0.036 Score=53.81 Aligned_cols=16 Identities=13% Similarity=0.011 Sum_probs=13.8
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
..+.+.++|.+|+|||
T Consensus 38 ~~~~l~l~G~~G~GKT 53 (229)
T PRK06893 38 QQPFFYIWGGKSSGKS 53 (229)
T ss_pred CCCeEEEECCCCCCHH
Confidence 3457899999999999
No 89
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.26 E-value=0.03 Score=54.29 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=24.6
Q ss_pred chHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 81 LESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 81 r~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
.+..++++.+++.......|.|+|.+|+|||
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT 52 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKS 52 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHH
Confidence 4556777777765566678999999999999
No 90
>COG3899 Predicted ATPase [General function prediction only]
Probab=96.17 E-value=0.033 Score=64.58 Aligned_cols=83 Identities=16% Similarity=0.209 Sum_probs=55.9
Q ss_pred CCChHHHHHHHHHHhcCCchhHHHHhhHhhcC------CCHhHHHHHHHHHhhcccCCCCCCcchhhHHHHhhcCCCchh
Q 039519 225 HPNIPELARSVAQECAGLPLALITIGRVMACK------KTPQEWHYAIQVLRISASEFPGMGKEVYPLLKYSYDSLPDET 298 (647)
Q Consensus 225 ~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~------~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~ 298 (647)
.....+..+.|+++..|.|+-+..+-..+... .+...|..-...+ ...... +.+...+..-.+.||. .
T Consensus 236 ~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i----~~~~~~-~~vv~~l~~rl~kL~~-~ 309 (849)
T COG3899 236 KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL----GILATT-DAVVEFLAARLQKLPG-T 309 (849)
T ss_pred ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc----CCchhh-HHHHHHHHHHHhcCCH-H
Confidence 34456789999999999999999888887652 3444554322111 111112 2456668888999999 8
Q ss_pred hhhHHhhhcCCCCCC
Q 039519 299 IRSCLLYCGLFPEDY 313 (647)
Q Consensus 299 ~k~~fl~~a~fp~~~ 313 (647)
.+......|++-..+
T Consensus 310 t~~Vl~~AA~iG~~F 324 (849)
T COG3899 310 TREVLKAAACIGNRF 324 (849)
T ss_pred HHHHHHHHHHhCccC
Confidence 888888888875443
No 91
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.09 E-value=0.016 Score=59.23 Aligned_cols=111 Identities=12% Similarity=0.153 Sum_probs=67.4
Q ss_pred CCcccchHHHHHHHHHhhhCCc-eEEEEEccCccCCC----------------CCCcceEEEEE-EcCccCHHHHHHHHH
Q 039519 76 EPTVGLESTFDKVRRCLREEQV-GIIGLYGMGGLLGA----------------PNDFDVVIWMV-VSKDLQLEKIQERIG 137 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~-~vi~I~G~gGiGKT----------------~~~F~~~~wv~-~s~~~~~~~~~~~i~ 137 (647)
..++|-+..++++.+.+..+.. ..+-++|..|+||| ..|+|...|.. -+....+.++. ++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir-~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR-NII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH-HHH
Confidence 4578999989999999887654 56689999999999 23444444543 22223333322 222
Q ss_pred HHhCCCCcCCCCCCHHHHHHHHHHHhccCCeeEEEecCC--CccccccccCCCCCCCCCcEEEEecCchH
Q 039519 138 RRIGFLDESWKNGSLEDKASDIFRILSKKKLLLLLDDIW--ERVDLTKVGVPFPDPENKSRIDFTTRFLE 205 (647)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IivTTR~~~ 205 (647)
..+.... ..+++-++|+|+++ +...+..+...+.....++.+|++|.+.+
T Consensus 83 ~~~~~~p------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~ 134 (313)
T PRK05564 83 EEVNKKP------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLE 134 (313)
T ss_pred HHHhcCc------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 2222110 11344456666664 44556777767776677888888886654
No 92
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.03 E-value=0.032 Score=58.65 Aligned_cols=96 Identities=17% Similarity=0.111 Sum_probs=61.7
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC------------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA------------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFL 143 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT------------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 143 (647)
..+++.++..+.+...|... +.|.++|++|+||| ...|+.+.||.+++.++..++...+.-. + .
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~-v 250 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-G-V 250 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-C-C
Confidence 45688899999999888754 46778999999999 3467788999999988876665432100 0 0
Q ss_pred CcCCCCCCHHHHHHHHHHHhc--cCCeeEEEecCCCc
Q 039519 144 DESWKNGSLEDKASDIFRILS--KKKLLLLLDDIWER 178 (647)
Q Consensus 144 ~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~ 178 (647)
.-..... -..+.+.+.-. ++++.+|+|+++..
T Consensus 251 gy~~~~G---~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 251 GFRRKDG---IFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred CeEecCc---hHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 0000111 11222223222 46899999999864
No 93
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.02 E-value=0.0026 Score=36.29 Aligned_cols=20 Identities=40% Similarity=0.635 Sum_probs=11.3
Q ss_pred CCeeeecCCCCCccccchhc
Q 039519 444 LEHLDLSSTAITHLPIDLQK 463 (647)
Q Consensus 444 L~~L~L~~~~l~~lp~~~~~ 463 (647)
|++|++++|+++.+|+++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 55666666665555555443
No 94
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.99 E-value=0.063 Score=55.68 Aligned_cols=100 Identities=17% Similarity=0.143 Sum_probs=65.7
Q ss_pred CCcccchHHHHHHHHHhhh----CCceEEEEEccCccCCC------CCCc---c---eEEEEEEcCccCHHHHHHHHHHH
Q 039519 76 EPTVGLESTFDKVRRCLRE----EQVGIIGLYGMGGLLGA------PNDF---D---VVIWMVVSKDLQLEKIQERIGRR 139 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~----~~~~vi~I~G~gGiGKT------~~~F---~---~~~wv~~s~~~~~~~~~~~i~~~ 139 (647)
...+||+.++..+.+++.. ...+.+-|.|-+|.||| ..++ . .++.+....--....+...|...
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~ 229 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSS 229 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHH
Confidence 5679999999999998864 46778999999999999 1111 1 22444333323456677777666
Q ss_pred hCCCCcCCCCCCHHHHHHHHHHHhccC--CeeEEEecCCC
Q 039519 140 IGFLDESWKNGSLEDKASDIFRILSKK--KLLLLLDDIWE 177 (647)
Q Consensus 140 l~~~~~~~~~~~~~~~~~~l~~~l~~~--r~LlVlDdv~~ 177 (647)
+..... ......+..+.+.+...+. -+|+|+|.++.
T Consensus 230 ~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~ 267 (529)
T KOG2227|consen 230 LLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDH 267 (529)
T ss_pred HHHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhH
Confidence 622111 2223356667777777654 58999999875
No 95
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.93 E-value=0.013 Score=60.73 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=31.9
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
..++|++..++.+.+++..+..+.+.++|.+|+|||
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT 50 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKT 50 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHH
Confidence 567999999999999888776667889999999999
No 96
>PRK08727 hypothetical protein; Validated
Probab=95.92 E-value=0.057 Score=52.57 Aligned_cols=36 Identities=8% Similarity=0.117 Sum_probs=23.0
Q ss_pred CCcccc-hHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGL-ESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr-~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
+.||+. ...+..+.....+.....+.|+|.+|+|||
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKT 55 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKT 55 (233)
T ss_pred hhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHH
Confidence 445543 344444444443444457999999999999
No 97
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.88 E-value=0.008 Score=57.53 Aligned_cols=204 Identities=18% Similarity=0.096 Sum_probs=118.9
Q ss_pred cceeeEEeccCcccccc----CccccccccCCCeeeecCC---CCC-ccccc-------hhcCccCcEEeecccccCCcC
Q 039519 417 LTFFLFFNMSNNHLLWK----LPLGISTLVSLEHLDLSST---AIT-HLPID-------LQKLVNLKCLNLQYMYNLNQF 481 (647)
Q Consensus 417 l~~L~~L~l~~~~~~~~----lp~~~~~L~~L~~L~L~~~---~l~-~lp~~-------~~~l~~L~~L~l~~~~~l~~l 481 (647)
+..+..++||+|..-+. +...|.+-.+|+..+++.- ... ++|++ +-+||.|+..+|+.|-.-.+.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 46788899999943322 3445666778888888753 222 55544 457899999999998655556
Q ss_pred ch---hhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhh------CCCCCcEEEEEecchhhHHHHhhhhhh
Q 039519 482 PR---LVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELI------GMKYLMAVTITLKRLQALQELLISQEL 552 (647)
Q Consensus 482 p~---~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~------~l~~L~~L~l~~~~~~~l~~l~~~~~~ 552 (647)
|+ .+|++-+.|.+|.+.+|..-++ . ++..+..+..|+ .-+.|++.....|.+.+........
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~---a----G~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~-- 179 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPI---A----GGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAA-- 179 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCcc---c----hhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHH--
Confidence 64 3478889999998887654222 0 001121222222 3367777777655543322111111
Q ss_pred hhccceeeeeccCCCceEEEe---------------cccccCCccEEEEcCCCCCCCChh-----hccccCCceEEeecc
Q 039519 553 QRCTQFLFLRCFNDSKSLDIF---------------CLACLHNLNKLYVAGCKHLEDFQM-----IIQRSSLSVHNLFIN 612 (647)
Q Consensus 553 ~~~l~~l~L~~~~~L~~L~l~---------------~~~~l~~L~~L~L~~~~~~~~~~~-----~~~l~~L~~L~L~~~ 612 (647)
.|..-.+|+.+.+. .+..+.+|+.|+|+.|.++..-.. +...+.|+.|.+.+|
T Consensus 180 -------~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 180 -------LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred -------HHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 11111244444431 155678999999999976543331 345577999999987
Q ss_pred cccccccchh----hhh--hhcCCCCcccCCC
Q 039519 613 KNYIHTNQLS----ILL--GINRLPHFTKSNP 638 (647)
Q Consensus 613 ~~~~~~~~~~----~l~--~l~~L~~L~~~~~ 638 (647)
- ++..... .+. ..|+|..|.+.++
T Consensus 253 l--ls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 253 L--LSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred h--hccccHHHHHHHhhhhcCCCccccccchh
Confidence 4 3322222 122 2466777766544
No 98
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.85 E-value=0.06 Score=56.30 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=30.8
Q ss_pred CCcccchHHHHHHHHHhhhCCc-eEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQV-GIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~-~vi~I~G~gGiGKT 111 (647)
..++|.+..++.+.+.+..+++ ..+-++|..|+|||
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKT 52 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKT 52 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHH
Confidence 5679999999999998887654 46789999999999
No 99
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.80 E-value=0.00094 Score=67.53 Aligned_cols=225 Identities=16% Similarity=0.140 Sum_probs=108.1
Q ss_pred cEEEEEeecccccc---cccCCCCcceeeEEeccCccccccCc-ccc-ccccCCCeeeecCC-CCCcc--ccchhcCccC
Q 039519 396 NVRRMSLMKNKIEN---LSELQPALTFFLFFNMSNNHLLWKLP-LGI-STLVSLEHLDLSST-AITHL--PIDLQKLVNL 467 (647)
Q Consensus 396 ~l~~L~l~~n~i~~---l~~~~~~l~~L~~L~l~~~~~~~~lp-~~~-~~L~~L~~L~L~~~-~l~~l--p~~~~~l~~L 467 (647)
-++.|++.++.-.. +-....+.+++..|++.++..++.-. .++ .....|++|+|..| .++.. -.-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 56677777654322 21122445566666777774333211 122 34567888888775 55522 1123467788
Q ss_pred cEEeecccccCCc--CchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHh-hCCCCCcEEEEEe-cchhhH
Q 039519 468 KCLNLQYMYNLNQ--FPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEEL-IGMKYLMAVTITL-KRLQAL 543 (647)
Q Consensus 468 ~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~-~~~~~l 543 (647)
.+|++++|+.+.. +.. +.....+++.+...+|..-.+ ..+... +++..+-++++.. +.++..
T Consensus 219 ~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~~~kGC~e~~l-------------e~l~~~~~~~~~i~~lnl~~c~~lTD~ 284 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQA-LQRGCKELEKLSLKGCLELEL-------------EALLKAAAYCLEILKLNLQHCNQLTDE 284 (483)
T ss_pred HHhhhccCchhhcCcchH-HhccchhhhhhhhcccccccH-------------HHHHHHhccChHhhccchhhhccccch
Confidence 8888888754433 111 123344444443334332110 001001 1122222333211 112221
Q ss_pred HHHhhhhhhhhccceeeeeccCCCceEEEec-ccccCCccEEEEcCCCCCCCChh--h-ccccCCceEEeeccccccccc
Q 039519 544 QELLISQELQRCTQFLFLRCFNDSKSLDIFC-LACLHNLNKLYVAGCKHLEDFQM--I-IQRSSLSVHNLFINKNYIHTN 619 (647)
Q Consensus 544 ~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~-~~~l~~L~~L~L~~~~~~~~~~~--~-~~l~~L~~L~L~~~~~~~~~~ 619 (647)
..+. -......++.+..++|.++....+.. ..+..+|+.|-|++|...+..-. + .+.+.|+.+++.+|.......
T Consensus 285 ~~~~-i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t 363 (483)
T KOG4341|consen 285 DLWL-IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT 363 (483)
T ss_pred HHHH-HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh
Confidence 1111 11222345666666666655544433 34567888888888875444332 2 356778888888774333321
Q ss_pred chhhhhhhcCCCCccc
Q 039519 620 QLSILLGINRLPHFTK 635 (647)
Q Consensus 620 ~~~~l~~l~~L~~L~~ 635 (647)
-...-.+.+.|+.|..
T Consensus 364 L~sls~~C~~lr~lsl 379 (483)
T KOG4341|consen 364 LASLSRNCPRLRVLSL 379 (483)
T ss_pred HhhhccCCchhccCCh
Confidence 2222334566666643
No 100
>PLN03025 replication factor C subunit; Provisional
Probab=95.76 E-value=0.023 Score=58.33 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=30.5
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
..++|.++.++.|.+++..+...-+-++|.+|+|||
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKT 48 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 48 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHH
Confidence 457899998888888887766666779999999999
No 101
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.56 E-value=0.00089 Score=64.06 Aligned_cols=100 Identities=19% Similarity=0.230 Sum_probs=61.6
Q ss_pred cccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccc--cchhcCccCcEEe
Q 039519 394 WRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLP--IDLQKLVNLKCLN 471 (647)
Q Consensus 394 ~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp--~~~~~l~~L~~L~ 471 (647)
+.+++.|..+++.+.++.-. .+|+.|.+|.||-| .+.++- .+..+++|+.|+|+.|.|..+- .-+.++++|+.|-
T Consensus 18 l~~vkKLNcwg~~L~DIsic-~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISIC-EKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHHHH-HhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 34566666666666654322 56666777777777 555553 4666677777777777666443 2356777777777
Q ss_pred ecccccCCcCchh----hhcCCCCCcEEe
Q 039519 472 LQYMYNLNQFPRL----VISAFSKLQVLR 496 (647)
Q Consensus 472 l~~~~~l~~lp~~----~i~~l~~L~~L~ 496 (647)
|..|+....-+.. ++.-|++|+.|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 7776555554432 345566666664
No 102
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=95.51 E-value=0.078 Score=59.29 Aligned_cols=128 Identities=13% Similarity=0.050 Sum_probs=73.9
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC------------CCCc---ceEEEEEEcCc---cCHHHHHHHH-
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA------------PNDF---DVVIWMVVSKD---LQLEKIQERI- 136 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT------------~~~F---~~~~wv~~s~~---~~~~~~~~~i- 136 (647)
+.++|++..+..+.+.+.......+.|+|.+|+||| ...+ ...-|+.+... .+...+...+
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ll 233 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLL 233 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhc
Confidence 567999999999888887666678999999999999 1111 12346655321 1222221111
Q ss_pred --------------HHHhCCCC----------------cCCCCCCHHHHHHHHHHHhccCCeeEEEecCCCc--cccccc
Q 039519 137 --------------GRRIGFLD----------------ESWKNGSLEDKASDIFRILSKKKLLLLLDDIWER--VDLTKV 184 (647)
Q Consensus 137 --------------~~~l~~~~----------------~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~l 184 (647)
+...+... +..... ....+..+.+.++++++.++-|+.|.. ..|+.+
T Consensus 234 g~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~i 312 (615)
T TIGR02903 234 GSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYI 312 (615)
T ss_pred CCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCcccchhh
Confidence 11111100 001111 223466788888888998887776654 346666
Q ss_pred cCCCCCCCCCcEEEE--ecCch
Q 039519 185 GVPFPDPENKSRIDF--TTRFL 204 (647)
Q Consensus 185 ~~~~~~~~~gs~Iiv--TTR~~ 204 (647)
...+........|+| ||++.
T Consensus 313 k~~~~~~~~~~~VLI~aTt~~~ 334 (615)
T TIGR02903 313 KKLFEEGAPADFVLIGATTRDP 334 (615)
T ss_pred hhhcccCccceEEEEEeccccc
Confidence 655555444444555 56543
No 103
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.42 E-value=0.034 Score=60.63 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=30.4
Q ss_pred CCcccchHHHHHHHHHhhhCCc-eEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQV-GIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~-~vi~I~G~gGiGKT 111 (647)
..+||-+..++.+...+..++. ..+-++|..|+|||
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKT 52 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKT 52 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHH
Confidence 5579999999999998887654 45778999999999
No 104
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.38 E-value=0.035 Score=61.49 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=31.2
Q ss_pred CCcccchHHHHHHHHHhhhCCc-eEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQV-GIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~-~vi~I~G~gGiGKT 111 (647)
..+||.+..++.|.+.+..+++ ..+-++|..|+|||
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKT 52 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKT 52 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHH
Confidence 5579999999999999987654 46789999999999
No 105
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.31 E-value=0.0019 Score=61.94 Aligned_cols=108 Identities=19% Similarity=0.098 Sum_probs=74.3
Q ss_pred CcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccchhcCccCcEEeecccccCCcCch-hhhcCCCCCcE
Q 039519 416 ALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLVNLKCLNLQYMYNLNQFPR-LVISAFSKLQV 494 (647)
Q Consensus 416 ~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~ 494 (647)
.|.+.+.|+..++ .+..+. -..+++.|++|.|+-|+|+.|- .+..|++|++|+|..| .+..+.. ..+.++++|++
T Consensus 17 dl~~vkKLNcwg~-~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGC-GLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCC-CccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhh
Confidence 3456677888888 666653 3458999999999999999986 5889999999999998 6666665 12456777777
Q ss_pred EeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEE
Q 039519 495 LRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTIT 536 (647)
Q Consensus 495 L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 536 (647)
|.+...... ..+.......-|.-|++|++|+-.
T Consensus 93 LWL~ENPCc---------~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 93 LWLDENPCC---------GEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred HhhccCCcc---------cccchhHHHHHHHHcccchhccCc
Confidence 776653220 001123333456777888877643
No 106
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.30 E-value=0.043 Score=59.72 Aligned_cols=36 Identities=11% Similarity=0.187 Sum_probs=31.0
Q ss_pred CCcccchHHHHHHHHHhhhCCce-EEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVG-IIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~-vi~I~G~gGiGKT 111 (647)
..+||-+..++.|.+.+..+.+. .+-++|..|+|||
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKT 52 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKT 52 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHH
Confidence 56799999999999999876554 5688999999999
No 107
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.25 E-value=0.048 Score=56.00 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=31.8
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
..++|+++.++.+.+++.......+.++|.+|+|||
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt 52 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKT 52 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHH
Confidence 457999999999999998776667899999999999
No 108
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.19 E-value=0.17 Score=55.12 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=30.1
Q ss_pred CCcccchHHHHHHHHHhhhCCc-eEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQV-GIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~-~vi~I~G~gGiGKT 111 (647)
..++|.+...+.|...+..+.. ..+.++|.+|+|||
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKT 50 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKT 50 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHH
Confidence 4579999988889888887654 45689999999999
No 109
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=95.17 E-value=0.059 Score=51.71 Aligned_cols=112 Identities=12% Similarity=0.086 Sum_probs=62.4
Q ss_pred CCcccchHHHHHHHHHh----hhCCceEEEEEccCccCCCCCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCc------
Q 039519 76 EPTVGLESTFDKVRRCL----REEQVGIIGLYGMGGLLGAPNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDE------ 145 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L----~~~~~~vi~I~G~gGiGKT~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------ 145 (647)
+.++|.|...+.|.+-. ......-+-+||..|.||| .+++.++.......-
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKS-------------------SlVkall~~y~~~GLRlIev~ 87 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKS-------------------SLVKALLNEYADQGLRLIEVS 87 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHH-------------------HHHHHHHHHHhhcCceEEEEC
Confidence 56799999988876533 3345556778999999999 233333333322110
Q ss_pred CCCCCCHHHHHHHHHHHhccCCeeEEEecCCCc---cccccccCCCCC----CCCCcEEEEecCchHHhh
Q 039519 146 SWKNGSLEDKASDIFRILSKKKLLLLLDDIWER---VDLTKVGVPFPD----PENKSRIDFTTRFLEICS 208 (647)
Q Consensus 146 ~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~---~~~~~l~~~~~~----~~~gs~IivTTR~~~v~~ 208 (647)
..+..+..++...++. +..||+|.+||+.=. .....++..+.. ......|.+||-.+++..
T Consensus 88 k~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 88 KEDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred HHHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 0012233333333332 357999999999632 223333333322 233455666666666644
No 110
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.14 E-value=0.044 Score=60.20 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=30.9
Q ss_pred CCcccchHHHHHHHHHhhhCC-ceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQ-VGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~-~~vi~I~G~gGiGKT 111 (647)
..+||.+...+.|.+.+..++ ...+.++|..|+|||
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKT 51 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKT 51 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHH
Confidence 557999999999999998765 457789999999999
No 111
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.14 E-value=0.045 Score=63.65 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=30.8
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
.+++||+++++++.+.|......-+.++|.+|+|||
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKT 214 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKT 214 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHH
Confidence 567999999999999998654445569999999999
No 112
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.13 E-value=0.16 Score=52.86 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=32.5
Q ss_pred CCCCCcccchHHHHHHHHHhhhCCce-EEEEEccCccCCC
Q 039519 73 RPCEPTVGLESTFDKVRRCLREEQVG-IIGLYGMGGLLGA 111 (647)
Q Consensus 73 ~~~~~~vGr~~~~~~i~~~L~~~~~~-vi~I~G~gGiGKT 111 (647)
+....++|.++..+.+.+.+..+.+. .+-++|+.|+||+
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~ 55 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKA 55 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHH
Confidence 33466899999999999999887644 5889999999999
No 113
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.07 E-value=0.13 Score=56.32 Aligned_cols=36 Identities=11% Similarity=0.106 Sum_probs=30.8
Q ss_pred CCcccchHHHHHHHHHhhhCCc-eEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQV-GIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~-~vi~I~G~gGiGKT 111 (647)
..++|.+..++.+.+.+..+.+ ..+-++|+.|+|||
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKT 52 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKT 52 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHH
Confidence 5679999999999998877544 46889999999999
No 114
>PRK10536 hypothetical protein; Provisional
Probab=95.06 E-value=0.047 Score=53.00 Aligned_cols=34 Identities=12% Similarity=0.139 Sum_probs=28.5
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
..+.+|......+...+.+. ..|.+.|.+|.|||
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT 88 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--QLIFATGEAGCGKT 88 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHH
Confidence 45678888888888888664 48999999999999
No 115
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.03 E-value=0.047 Score=61.98 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=30.7
Q ss_pred CCcccchHHHHHHHHHhhhCCceE-EEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGI-IGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~v-i~I~G~gGiGKT 111 (647)
..+||.+..++.|.+.+..+++.- +.++|..|+|||
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKT 52 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKT 52 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHH
Confidence 567999999999999988776554 579999999999
No 116
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.97 E-value=0.053 Score=61.39 Aligned_cols=36 Identities=31% Similarity=0.528 Sum_probs=28.7
Q ss_pred CCcccchHHHH---HHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFD---KVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~---~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
+.+||.+..+. .+.+.+..+....+.++|++|+|||
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKT 66 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKT 66 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHH
Confidence 45799988774 4566666677777889999999999
No 117
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.96 E-value=0.065 Score=58.83 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=30.9
Q ss_pred CCcccchHHHHHHHHHhhhCCc-eEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQV-GIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~-~vi~I~G~gGiGKT 111 (647)
..+||-+..++.|.+.+..+++ ..+-++|..|+|||
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKT 52 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKT 52 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHH
Confidence 5579999999999999987754 45688999999999
No 118
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.96 E-value=0.077 Score=57.03 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=30.9
Q ss_pred CCcccchHHHHHHHHHhhhCCce-EEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVG-IIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~-vi~I~G~gGiGKT 111 (647)
..+||.+..++.+.+.+..+.+. .+-++|..|+|||
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKT 49 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKT 49 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHH
Confidence 56799999998888888877654 7889999999999
No 119
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=94.88 E-value=0.031 Score=53.92 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=20.6
Q ss_pred EEEEEccCccCCC----------CCCcceEEEEEE
Q 039519 99 IIGLYGMGGLLGA----------PNDFDVVIWMVV 123 (647)
Q Consensus 99 vi~I~G~gGiGKT----------~~~F~~~~wv~~ 123 (647)
.++|+|..|+||| ...|..+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec
Confidence 5678999999999 778887777754
No 120
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.87 E-value=0.13 Score=54.10 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=29.9
Q ss_pred CCcccchHHHHHHHHHhhhCC----------ceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQ----------VGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~----------~~vi~I~G~gGiGKT 111 (647)
+.++|-+..++.+.+.+..+. ...+-++|+.|+|||
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt 50 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRS 50 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHH
Confidence 457899999999999888653 456889999999999
No 121
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.86 E-value=0.083 Score=53.88 Aligned_cols=103 Identities=17% Similarity=0.283 Sum_probs=55.1
Q ss_pred CCcccchHHH---HHHHHHhhhCCceEEEEEccCccCCC------CCCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCCc
Q 039519 76 EPTVGLESTF---DKVRRCLREEQVGIIGLYGMGGLLGA------PNDFDVVIWMVVSKDL-QLEKIQERIGRRIGFLDE 145 (647)
Q Consensus 76 ~~~vGr~~~~---~~i~~~L~~~~~~vi~I~G~gGiGKT------~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~ 145 (647)
..+||.+-.+ .-|...+..+.+...-.||++|+||| .+.++. -|..+|-.. +++++.
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~-~f~~~sAv~~gvkdlr------------ 90 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNA-AFEALSAVTSGVKDLR------------ 90 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCC-ceEEeccccccHHHHH------------
Confidence 3456655443 23445555667777778999999999 222221 122332222 122221
Q ss_pred CCCCCCHHHHHHHH-HHHhccCCeeEEEecCCC--ccccccccCCCCCCCCCcEEEEecC
Q 039519 146 SWKNGSLEDKASDI-FRILSKKKLLLLLDDIWE--RVDLTKVGVPFPDPENKSRIDFTTR 202 (647)
Q Consensus 146 ~~~~~~~~~~~~~l-~~~l~~~r~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IivTTR 202 (647)
+..+.- +....++|.+|++|.|.. ..+-+.| +|.-.+|.-|+|-+.
T Consensus 91 --------~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGAT 139 (436)
T COG2256 91 --------EIIEEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGAT 139 (436)
T ss_pred --------HHHHHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEecc
Confidence 112222 122348999999999975 3333433 344456777777444
No 122
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.85 E-value=0.35 Score=50.47 Aligned_cols=36 Identities=14% Similarity=0.250 Sum_probs=30.8
Q ss_pred CCcccchHHHHHHHHHhhhCCc-eEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQV-GIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~-~vi~I~G~gGiGKT 111 (647)
..+||.+..++.+.+.+..+.. ..+-++|.+|+|||
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt 50 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKT 50 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHH
Confidence 5679999999999998887654 46788999999999
No 123
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.83 E-value=0.093 Score=57.53 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=30.6
Q ss_pred CCcccchHHHHHHHHHhhhCCce-EEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVG-IIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~-vi~I~G~gGiGKT 111 (647)
..+||-+..++.+.+.+..+... .+-++|..|+|||
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKT 52 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKT 52 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHH
Confidence 56799999999999998876554 5678999999999
No 124
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.83 E-value=0.064 Score=57.76 Aligned_cols=36 Identities=14% Similarity=0.144 Sum_probs=30.0
Q ss_pred CCcccchHHHHHHHHHhhhCCc-eEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQV-GIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~-~vi~I~G~gGiGKT 111 (647)
..+||.+...+.+...+..+.. ..+-++|.+|+|||
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKT 50 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKT 50 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHH
Confidence 5679999888888888877665 45789999999999
No 125
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.79 E-value=0.063 Score=61.62 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=30.9
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
.+++||+.+++++.+.|......-+.++|.+|+|||
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT 217 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKT 217 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHH
Confidence 567999999999999887655555679999999999
No 126
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.78 E-value=0.0015 Score=60.95 Aligned_cols=86 Identities=19% Similarity=0.157 Sum_probs=77.3
Q ss_pred cccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccchhcCccCcE
Q 039519 390 EIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLVNLKC 469 (647)
Q Consensus 390 ~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~L~~ 469 (647)
++......+.|+++.|+.-.+...++.++.+..|+++.| .+..+|..++.+..++.+++..|+.+.+|.+++.++.+++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence 345567899999999999888888888889999999999 8889999999999999999999999999999999999999
Q ss_pred Eeecccc
Q 039519 470 LNLQYMY 476 (647)
Q Consensus 470 L~l~~~~ 476 (647)
+++.+|+
T Consensus 116 ~e~k~~~ 122 (326)
T KOG0473|consen 116 NEQKKTE 122 (326)
T ss_pred hhhccCc
Confidence 9999874
No 127
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.66 E-value=0.17 Score=47.47 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=19.9
Q ss_pred HHHHHHhhhCCc-eEEEEEccCccCCC
Q 039519 86 DKVRRCLREEQV-GIIGLYGMGGLLGA 111 (647)
Q Consensus 86 ~~i~~~L~~~~~-~vi~I~G~gGiGKT 111 (647)
+.+.+.+..+.. ..+-++|..|+|||
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt 28 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKE 28 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHH
Confidence 345666666655 57889999999999
No 128
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.63 E-value=0.14 Score=54.21 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=30.6
Q ss_pred CCcccchHHHHHHHHHhhhCCce-EEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVG-IIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~-vi~I~G~gGiGKT 111 (647)
..++|.+..++.|...+.++.+. .+-++|+.|+|||
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKt 52 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKT 52 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHH
Confidence 56799999999998888877654 4788999999999
No 129
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.61 E-value=0.19 Score=49.04 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=21.6
Q ss_pred ccchH-HHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 79 VGLES-TFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 79 vGr~~-~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
+|.+. .+..+.++....+...+.|+|..|+|||
T Consensus 26 ~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKT 59 (235)
T PRK08084 26 PGDNDSLLAALQNALRQEHSGYIYLWSREGAGRS 59 (235)
T ss_pred cCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHH
Confidence 46333 3344444444445568899999999999
No 130
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.54 E-value=0.082 Score=46.30 Aligned_cols=79 Identities=23% Similarity=0.040 Sum_probs=41.8
Q ss_pred eEEEEEccCccCCC-------CCCcc---eEEEEEEcCccCHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHhccCC
Q 039519 98 GIIGLYGMGGLLGA-------PNDFD---VVIWMVVSKDLQLEKIQERIGRRIGFLDESWKNGSLEDKASDIFRILSKKK 167 (647)
Q Consensus 98 ~vi~I~G~gGiGKT-------~~~F~---~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r 167 (647)
..+.|+|.+|+||| ...+. .++.+..+........... ....... ............+.+..+..+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL-LIIVGGK---KASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH-hhhhhcc---CCCCCHHHHHHHHHHHHHhcC
Confidence 57899999999999 22222 3556655443322222211 0111111 122233334445555555444
Q ss_pred -eeEEEecCCCccc
Q 039519 168 -LLLLLDDIWERVD 180 (647)
Q Consensus 168 -~LlVlDdv~~~~~ 180 (647)
.+|++|++.....
T Consensus 79 ~~viiiDei~~~~~ 92 (148)
T smart00382 79 PDVLILDEITSLLD 92 (148)
T ss_pred CCEEEEECCcccCC
Confidence 9999999987543
No 131
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.52 E-value=0.11 Score=56.17 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=30.2
Q ss_pred CCcccchHHHHHHHHHhhhCCc-eEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQV-GIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~-~vi~I~G~gGiGKT 111 (647)
..+||-+..+..+...+..+.. ..+-++|..|+|||
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKT 57 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKT 57 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHH
Confidence 5579999999999888877653 57788999999999
No 132
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.45 E-value=0.014 Score=63.62 Aligned_cols=10 Identities=30% Similarity=0.747 Sum_probs=5.3
Q ss_pred ccEEEEcCCC
Q 039519 581 LNKLYVAGCK 590 (647)
Q Consensus 581 L~~L~L~~~~ 590 (647)
++.|+++.|.
T Consensus 403 l~~L~l~~~~ 412 (482)
T KOG1947|consen 403 LRVLNLSDCR 412 (482)
T ss_pred cceEecccCc
Confidence 5555555553
No 133
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.44 E-value=0.08 Score=49.72 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=32.6
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
..+||-|+.++.+.-...+++..-+.|.||+|+|||
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKT 62 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKT 62 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchh
Confidence 456999999999988888888999999999999999
No 134
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.42 E-value=0.27 Score=48.85 Aligned_cols=100 Identities=12% Similarity=0.219 Sum_probs=66.3
Q ss_pred CCcccchH---HHHHHHHHhhh---CCceEEEEEccCccCCC----------CCCc------ceEEEEEEcCccCHHHHH
Q 039519 76 EPTVGLES---TFDKVRRCLRE---EQVGIIGLYGMGGLLGA----------PNDF------DVVIWMVVSKDLQLEKIQ 133 (647)
Q Consensus 76 ~~~vGr~~---~~~~i~~~L~~---~~~~vi~I~G~gGiGKT----------~~~F------~~~~wv~~s~~~~~~~~~ 133 (647)
+..||-.. .++++.+++.. ....-+.|||-+|.||| ...+ -.++-|.....++...++
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence 34555433 34444555543 35567899999999999 1111 146677788889999999
Q ss_pred HHHHHHhCCCCcCCCCCCHHHHHHHHHHHhcc-CCeeEEEecCCC
Q 039519 134 ERIGRRIGFLDESWKNGSLEDKASDIFRILSK-KKLLLLLDDIWE 177 (647)
Q Consensus 134 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~r~LlVlDdv~~ 177 (647)
..|+.+++.... ...+.........+.++. +-=+||+|.+.+
T Consensus 114 ~~IL~~lgaP~~--~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 114 SAILEALGAPYR--PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred HHHHHHhCcccC--CCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 999999997653 233445555555566654 344788899975
No 135
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.39 E-value=0.098 Score=60.91 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=31.1
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
.++|||+.++.++++.|......-+.++|.+|+|||
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT 213 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKT 213 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHH
Confidence 568999999999999998765556669999999999
No 136
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.36 E-value=0.12 Score=57.12 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=30.6
Q ss_pred CCcccchHHHHHHHHHhhhCCc-eEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQV-GIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~-~vi~I~G~gGiGKT 111 (647)
..+||-+..++.|.+.+..+.+ ..+-++|..|+|||
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKT 52 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKT 52 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHH
Confidence 5679998888889998887655 56689999999999
No 137
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.33 E-value=0.03 Score=29.60 Aligned_cols=16 Identities=50% Similarity=0.779 Sum_probs=6.9
Q ss_pred CCCeeeecCCCCCccc
Q 039519 443 SLEHLDLSSTAITHLP 458 (647)
Q Consensus 443 ~L~~L~L~~~~l~~lp 458 (647)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555666666555554
No 138
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.18 E-value=0.078 Score=58.86 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=30.6
Q ss_pred CCcccchHHHHHHHHHhhhCCc-eEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQV-GIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~-~vi~I~G~gGiGKT 111 (647)
..+||.+..++.|...+..+.+ ..+-++|..|+|||
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKT 52 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKT 52 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHH
Confidence 5679999999999998887655 34678999999999
No 139
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=94.03 E-value=0.13 Score=51.50 Aligned_cols=107 Identities=18% Similarity=0.182 Sum_probs=60.2
Q ss_pred cccchHHHHH---HHHHhhhCCceEEEEEccCccCCC--------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcC
Q 039519 78 TVGLESTFDK---VRRCLREEQVGIIGLYGMGGLLGA--------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDES 146 (647)
Q Consensus 78 ~vGr~~~~~~---i~~~L~~~~~~vi~I~G~gGiGKT--------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 146 (647)
.||.+..+.+ |.+++..+.+..+.+||.+|+||| ...=....||..|-+-.-..-.+.|.++-..
T Consensus 140 yvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~---- 215 (554)
T KOG2028|consen 140 YVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQN---- 215 (554)
T ss_pred hcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHH----
Confidence 3565544332 445555678888889999999999 2222236677766543322223333322110
Q ss_pred CCCCCHHHHHHHHHHHhccCCeeEEEecCCC--ccccccccCCCCCCCCCcEEEE--ecCch
Q 039519 147 WKNGSLEDKASDIFRILSKKKLLLLLDDIWE--RVDLTKVGVPFPDPENKSRIDF--TTRFL 204 (647)
Q Consensus 147 ~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Iiv--TTR~~ 204 (647)
...+.++|..|.+|.|.. ..+-+.| +|...+|+-++| ||.+.
T Consensus 216 -------------~~~l~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENP 261 (554)
T KOG2028|consen 216 -------------EKSLTKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENP 261 (554)
T ss_pred -------------HHhhhcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCC
Confidence 112347889999999975 2333332 455556776555 55544
No 140
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.01 E-value=0.01 Score=64.70 Aligned_cols=227 Identities=23% Similarity=0.245 Sum_probs=114.9
Q ss_pred cccEEEEEeecc-cccc--cccCCCCcceeeEEeccCc-cccccCc----cccccccCCCeeeecCCC-CCcc-ccchh-
Q 039519 394 WRNVRRMSLMKN-KIEN--LSELQPALTFFLFFNMSNN-HLLWKLP----LGISTLVSLEHLDLSSTA-ITHL-PIDLQ- 462 (647)
Q Consensus 394 ~~~l~~L~l~~n-~i~~--l~~~~~~l~~L~~L~l~~~-~~~~~lp----~~~~~L~~L~~L~L~~~~-l~~l-p~~~~- 462 (647)
.+.++.|.+..+ .+.. +-......+.|+.|+++++ ......+ .....+.+|+.|+++++. ++.. -..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 456666666654 2332 2222255567888888762 1111111 123445778888888775 5522 12222
Q ss_pred cCccCcEEeecccccCCcCch-hhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEe-cch
Q 039519 463 KLVNLKCLNLQYMYNLNQFPR-LVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITL-KRL 540 (647)
Q Consensus 463 ~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~ 540 (647)
.+++|++|.+.+|..++.-.- .+...+++|++|++..|.... .........++++|+.|.+.. ..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~------------d~~l~~~~~~c~~l~~l~~~~~~~c 334 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT------------DSGLEALLKNCPNLRELKLLSLNGC 334 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch------------HHHHHHHHHhCcchhhhhhhhcCCC
Confidence 367888888777643221111 113456678888887766521 111222234455566555431 112
Q ss_pred hhHHHHhhhhhhh---hccceeeeeccCCCceEEEecccccCCcc-EEEEcCCCCCCCChh--h-ccccCCceEEeeccc
Q 039519 541 QALQELLISQELQ---RCTQFLFLRCFNDSKSLDIFCLACLHNLN-KLYVAGCKHLEDFQM--I-IQRSSLSVHNLFINK 613 (647)
Q Consensus 541 ~~l~~l~~~~~~~---~~l~~l~L~~~~~L~~L~l~~~~~l~~L~-~L~L~~~~~~~~~~~--~-~~l~~L~~L~L~~~~ 613 (647)
..++.+....... ..+..+.+.+|+++..+.+...+ ..... .+.+.+|+.++ -.. . .....++.|+++.|.
T Consensus 335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~ 412 (482)
T KOG1947|consen 335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRLCRSDSLRVLNLSDCR 412 (482)
T ss_pred ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHhccCCccceEecccCc
Confidence 3333333222222 25666666677777777765555 44444 56667776654 332 1 223337888888764
Q ss_pred ccccccchhhhhh-hcCCCCccc
Q 039519 614 NYIHTNQLSILLG-INRLPHFTK 635 (647)
Q Consensus 614 ~~~~~~~~~~l~~-l~~L~~L~~ 635 (647)
......+..... ...+..+..
T Consensus 413 -~~t~~~l~~~~~~~~~~~~l~~ 434 (482)
T KOG1947|consen 413 -LVTDKGLRCLADSCSNLKDLDL 434 (482)
T ss_pred -cccccchHHHhhhhhccccCCc
Confidence 334344433333 445555533
No 141
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=93.99 E-value=0.13 Score=53.97 Aligned_cols=34 Identities=26% Similarity=0.296 Sum_probs=27.1
Q ss_pred cccchHHHHHHHHHhhh-------------CCceEEEEEccCccCCC
Q 039519 78 TVGLESTFDKVRRCLRE-------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 78 ~vGr~~~~~~i~~~L~~-------------~~~~vi~I~G~gGiGKT 111 (647)
+.|+++.+++|.+.+.. ...+-+.++|.+|+|||
T Consensus 124 i~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT 170 (364)
T TIGR01242 124 IGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKT 170 (364)
T ss_pred hCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHH
Confidence 47999999999887642 12455889999999999
No 142
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.99 E-value=0.16 Score=59.03 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=31.1
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
.++|||+.++.++++.|......-+.++|.+|+|||
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKT 222 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKT 222 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHH
Confidence 567999999999999888765556669999999999
No 143
>PRK09087 hypothetical protein; Validated
Probab=93.96 E-value=0.46 Score=45.94 Aligned_cols=16 Identities=19% Similarity=0.052 Sum_probs=14.0
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
..+.+.|||.+|+|||
T Consensus 43 ~~~~l~l~G~~GsGKT 58 (226)
T PRK09087 43 PSPVVVLAGPVGSGKT 58 (226)
T ss_pred CCCeEEEECCCCCCHH
Confidence 3457899999999999
No 144
>PRK08181 transposase; Validated
Probab=93.90 E-value=0.039 Score=54.60 Aligned_cols=15 Identities=20% Similarity=0.053 Sum_probs=13.1
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..-+.++|.+|+|||
T Consensus 106 ~~nlll~Gp~GtGKT 120 (269)
T PRK08181 106 GANLLLFGPPGGGKS 120 (269)
T ss_pred CceEEEEecCCCcHH
Confidence 345889999999999
No 145
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.90 E-value=0.22 Score=47.26 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=25.2
Q ss_pred CCCcccchHHHHHHHHHhh-----hCCceEEEEEccCccCCC
Q 039519 75 CEPTVGLESTFDKVRRCLR-----EEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 75 ~~~~vGr~~~~~~i~~~L~-----~~~~~vi~I~G~gGiGKT 111 (647)
...|||.+..++++.-++. ++...-+-.||++|+|||
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKT 64 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKT 64 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchh
Confidence 3679999998888765554 234667889999999999
No 146
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.88 E-value=0.19 Score=52.69 Aligned_cols=36 Identities=11% Similarity=0.216 Sum_probs=31.2
Q ss_pred CCcccchHHHHHHHHHhhhCCc-eEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQV-GIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~-~vi~I~G~gGiGKT 111 (647)
..++|.+...+.+.+.+..+.. ..+-++|.+|+|||
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt 53 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKT 53 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHH
Confidence 5679999999999999987654 47889999999999
No 147
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=93.86 E-value=2.4 Score=46.71 Aligned_cols=96 Identities=11% Similarity=0.084 Sum_probs=66.6
Q ss_pred CcccchHHHHHHHHHhhh-----CCceEEEEEccCccCCC---------------CCCcce--EEEEEEcCccCHHHHHH
Q 039519 77 PTVGLESTFDKVRRCLRE-----EQVGIIGLYGMGGLLGA---------------PNDFDV--VIWMVVSKDLQLEKIQE 134 (647)
Q Consensus 77 ~~vGr~~~~~~i~~~L~~-----~~~~vi~I~G~gGiGKT---------------~~~F~~--~~wv~~s~~~~~~~~~~ 134 (647)
.+-+||.+..+|...+.. +..+.+-|.|.+|+||| .+.-+. .+.|..-.-....+++.
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~ 476 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYE 476 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHH
Confidence 345899999999998864 23458999999999999 222222 23444344456899999
Q ss_pred HHHHHhCCCCcCCCCCCHHHHHHHHHHHhc-----cCCeeEEEecCCC
Q 039519 135 RIGRRIGFLDESWKNGSLEDKASDIFRILS-----KKKLLLLLDDIWE 177 (647)
Q Consensus 135 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~~r~LlVlDdv~~ 177 (647)
.|...+.... .......+.+..++. .+.++|++|+++.
T Consensus 477 ~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~ 519 (767)
T KOG1514|consen 477 KIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDI 519 (767)
T ss_pred HHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHH
Confidence 9999987532 344555666666664 3568888898864
No 148
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.69 E-value=0.13 Score=60.06 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=30.8
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
.++|||+.++.++.+.|......-+.++|.+|+|||
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT 208 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKT 208 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHH
Confidence 557999999999999997755556668999999999
No 149
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=93.68 E-value=0.04 Score=56.19 Aligned_cols=62 Identities=26% Similarity=0.213 Sum_probs=32.5
Q ss_pred cccCCCeeeecCC-CCCc--cccchhcCccCcEEeecccccCCcCchhhh-cCCCCCcEEeccccC
Q 039519 440 TLVSLEHLDLSST-AITH--LPIDLQKLVNLKCLNLQYMYNLNQFPRLVI-SAFSKLQVLRMFDCG 501 (647)
Q Consensus 440 ~L~~L~~L~L~~~-~l~~--lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i-~~l~~L~~L~l~~~~ 501 (647)
.+..|++|..+++ .+.. +..-..+..+|++|-++.|+.+...--..+ .+...|+.+++..|.
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence 4556777777665 4442 222223566777777777744333322112 334556666665554
No 150
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.60 E-value=0.53 Score=48.72 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=33.8
Q ss_pred CCCCCCCcccchHHHHHHHHHhhhCCc-eEEEEEccCccCCC
Q 039519 71 DQRPCEPTVGLESTFDKVRRCLREEQV-GIIGLYGMGGLLGA 111 (647)
Q Consensus 71 ~~~~~~~~vGr~~~~~~i~~~L~~~~~-~vi~I~G~gGiGKT 111 (647)
.|+....++|-++..+.+...+..+.. ..+-|+|..|+|||
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKt 59 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKA 59 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHH
Confidence 344556789999999999999987654 46889999999999
No 151
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.43 E-value=0.32 Score=54.12 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=30.6
Q ss_pred CCcccchHHHHHHHHHhhhCCc-eEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQV-GIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~-~vi~I~G~gGiGKT 111 (647)
..+||-+..++.|.+.+..+.+ ..+-++|..|+|||
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKt 52 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKT 52 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHH
Confidence 5679999999999998887655 44889999999999
No 152
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.41 E-value=0.19 Score=53.56 Aligned_cols=36 Identities=11% Similarity=0.288 Sum_probs=31.0
Q ss_pred CCcccchHHHHHHHHHhhhCCce-EEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVG-IIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~-vi~I~G~gGiGKT 111 (647)
..+||.+..+..|...+..+.+. .+.++|..|+|||
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKT 54 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKT 54 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHH
Confidence 56799999999999999887654 5789999999999
No 153
>PRK08116 hypothetical protein; Validated
Probab=93.35 E-value=0.08 Score=52.66 Aligned_cols=91 Identities=20% Similarity=0.142 Sum_probs=46.8
Q ss_pred eEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHhccCC
Q 039519 98 GIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDESWKNGSLEDKASDIFRILSKKK 167 (647)
Q Consensus 98 ~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r 167 (647)
..+.++|.+|+||| ...-..+++++ ...++..+....... ...+.. .+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~------~~~ll~~i~~~~~~~----~~~~~~----~~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN------FPQLLNRIKSTYKSS----GKEDEN----EIIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE------HHHHHHHHHHHHhcc----ccccHH----HHHHHhcCCC
Confidence 45889999999999 11223445554 344555555444321 111122 2334444444
Q ss_pred eeEEEecCCC--cccccc--ccCCCCC-CCCCcEEEEecCc
Q 039519 168 LLLLLDDIWE--RVDLTK--VGVPFPD-PENKSRIDFTTRF 203 (647)
Q Consensus 168 ~LlVlDdv~~--~~~~~~--l~~~~~~-~~~gs~IivTTR~ 203 (647)
||||||+.. ..+|.. +...+.. ..+|..+||||..
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 899999943 222321 2111111 1345668888864
No 154
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.14 E-value=0.21 Score=49.61 Aligned_cols=35 Identities=23% Similarity=0.189 Sum_probs=24.7
Q ss_pred CcccchHHHHHHHHHhh---------h------CCceEEEEEccCccCCC
Q 039519 77 PTVGLESTFDKVRRCLR---------E------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 77 ~~vGr~~~~~~i~~~L~---------~------~~~~vi~I~G~gGiGKT 111 (647)
.++|.+..+++|.+... . ....-+.++|.+|+|||
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKT 56 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKT 56 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHH
Confidence 47898887777654422 1 13445778999999999
No 155
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.09 E-value=0.72 Score=53.19 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=30.7
Q ss_pred CCcccchHHHHHHHHHhhhCCc-eEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQV-GIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~-~vi~I~G~gGiGKT 111 (647)
..+||.+..++.|...+..+++ ..+.++|..|+|||
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKT 51 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKT 51 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHH
Confidence 5579999999999999987655 45789999999999
No 156
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.06 E-value=0.048 Score=31.03 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=13.6
Q ss_pred eeeEEeccCccccccCcccccc
Q 039519 419 FFLFFNMSNNHLLWKLPLGIST 440 (647)
Q Consensus 419 ~L~~L~l~~~~~~~~lp~~~~~ 440 (647)
+|++|++++| .++.+|++|++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 3667777777 55577766554
No 157
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=93.03 E-value=2.6 Score=41.38 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=29.2
Q ss_pred CCcccchHHHHHHHHHhhh-----CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE-----EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~-----~~~~vi~I~G~gGiGKT 111 (647)
..|||.++.++++.=.+.. +.+--|-++|++|.|||
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKT 66 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKT 66 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHH
Confidence 5689999988888766652 45667899999999999
No 158
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.02 E-value=0.87 Score=48.96 Aligned_cols=36 Identities=14% Similarity=0.203 Sum_probs=30.9
Q ss_pred CCcccchHHHHHHHHHhhhCCc-eEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQV-GIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~-~vi~I~G~gGiGKT 111 (647)
..++|.+..++.+.+.+..+.. ..+-++|..|+|||
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKt 53 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKT 53 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHH
Confidence 5679999999999999987665 56778999999999
No 159
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.01 E-value=0.68 Score=44.82 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=22.5
Q ss_pred CCcc-cchHHHH-HHHHHhhh-CCceEEEEEccCccCCC
Q 039519 76 EPTV-GLESTFD-KVRRCLRE-EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~v-Gr~~~~~-~i~~~L~~-~~~~vi~I~G~gGiGKT 111 (647)
+.|+ |.+.... .+.++... .....+.|+|..|+|||
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT 56 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRS 56 (227)
T ss_pred cccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHH
Confidence 4444 5544443 33343332 34567889999999999
No 160
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=92.97 E-value=0.29 Score=48.29 Aligned_cols=80 Identities=24% Similarity=0.303 Sum_probs=46.5
Q ss_pred CceEEEEEccCccCCC------------C---CC-cceEEEEEEcCccCHHHHHHHHHHHhCCCCcC-------CCCCCH
Q 039519 96 QVGIIGLYGMGGLLGA------------P---ND-FDVVIWMVVSKDLQLEKIQERIGRRIGFLDES-------WKNGSL 152 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT------------~---~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 152 (647)
...+.=|+|.+|+||| . .. =..++||+-...|+...+.+ |++..+.+.+. ....+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-HhhccccccchhhhceeeeecCCH
Confidence 3468999999999999 1 11 23689999999999888764 55554432110 012233
Q ss_pred HHHHHHH---HHHhc-cCCeeEEEecCC
Q 039519 153 EDKASDI---FRILS-KKKLLLLLDDIW 176 (647)
Q Consensus 153 ~~~~~~l---~~~l~-~~r~LlVlDdv~ 176 (647)
++....+ ...+. .+=-|||+|.+-
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHhhccccceEEEEecchH
Confidence 3333333 33332 334488888874
No 161
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=92.85 E-value=0.16 Score=44.20 Aligned_cols=12 Identities=33% Similarity=0.124 Sum_probs=11.0
Q ss_pred EEEEccCccCCC
Q 039519 100 IGLYGMGGLLGA 111 (647)
Q Consensus 100 i~I~G~gGiGKT 111 (647)
|-|+|.+|+|||
T Consensus 1 ill~G~~G~GKT 12 (132)
T PF00004_consen 1 ILLHGPPGTGKT 12 (132)
T ss_dssp EEEESSTTSSHH
T ss_pred CEEECcCCCCee
Confidence 568999999999
No 162
>PF14516 AAA_35: AAA-like domain
Probab=92.83 E-value=6.2 Score=40.62 Aligned_cols=101 Identities=15% Similarity=0.170 Sum_probs=61.5
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC-----------CCCcceEEEEEEcCc-----cCHHH----HHHH
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA-----------PNDFDVVIWMVVSKD-----LQLEK----IQER 135 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT-----------~~~F~~~~wv~~s~~-----~~~~~----~~~~ 135 (647)
+..|.|...-+++.+.+.+. ...+.|.|.-.+||| +..| .++++++..- .+... +...
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~~~-~~v~id~~~~~~~~~~~~~~f~~~~~~~ 88 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQGY-RCVYIDLQQLGSAIFSDLEQFLRWFCEE 88 (331)
T ss_pred CcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHCCC-EEEEEEeecCCCcccCCHHHHHHHHHHH
Confidence 45689986666777777653 358899999999999 3344 3457775442 23444 4455
Q ss_pred HHHHhCCCCc---CCC--CCCHHHHHHHHHHHh---ccCCeeEEEecCCCc
Q 039519 136 IGRRIGFLDE---SWK--NGSLEDKASDIFRIL---SKKKLLLLLDDIWER 178 (647)
Q Consensus 136 i~~~l~~~~~---~~~--~~~~~~~~~~l~~~l---~~~r~LlVlDdv~~~ 178 (647)
+.++++.... .|+ ..........+.+.+ .+++.+|++|+|+..
T Consensus 89 i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l 139 (331)
T PF14516_consen 89 ISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRL 139 (331)
T ss_pred HHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhh
Confidence 5555554321 011 123334444555544 258999999999864
No 163
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.68 E-value=0.43 Score=51.34 Aligned_cols=82 Identities=15% Similarity=0.095 Sum_probs=52.2
Q ss_pred CcccchHHHHHHHHHhhh------------CCceEEEEEccCccCCCCCCcceEEEEEEcCccCHHHHHHHHHHHhCCCC
Q 039519 77 PTVGLESTFDKVRRCLRE------------EQVGIIGLYGMGGLLGAPNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLD 144 (647)
Q Consensus 77 ~~vGr~~~~~~i~~~L~~------------~~~~vi~I~G~gGiGKT~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 144 (647)
.+=|.+..+.++.+++.- ...+=|-+||++|.||| .+.+.|+.+++..-
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT-------------------~lA~AiAgel~vPf 251 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKT-------------------SLANAIAGELGVPF 251 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHH-------------------HHHHHHhhhcCCce
Confidence 345899999998887652 13455789999999999 23333333333211
Q ss_pred ---------cCCCCCCHHHHHHHHHHHhccCCeeEEEecCCC
Q 039519 145 ---------ESWKNGSLEDKASDIFRILSKKKLLLLLDDIWE 177 (647)
Q Consensus 145 ---------~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~ 177 (647)
..+...+++.+.+.+.+.-..-.+++++|+++-
T Consensus 252 ~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 252 LSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred EeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 001223455555555555567899999999974
No 164
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=92.55 E-value=0.13 Score=50.60 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=31.6
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
..++|.+..++-+.+.+..........+|++|.|||
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKT 71 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKT 71 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHh
Confidence 456899999999999888877788889999999999
No 165
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.47 E-value=0.32 Score=54.00 Aligned_cols=36 Identities=14% Similarity=0.291 Sum_probs=31.0
Q ss_pred CCcccchHHHHHHHHHhhhCCce-EEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVG-IIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~-vi~I~G~gGiGKT 111 (647)
..++|.+..++.|.+.+..++.. .+-++|..|+|||
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKT 60 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKT 60 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHH
Confidence 55799999999999999877544 6889999999999
No 166
>PHA00729 NTP-binding motif containing protein
Probab=92.42 E-value=0.34 Score=46.30 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=19.7
Q ss_pred HHHHHhhhCCceEEEEEccCccCCC
Q 039519 87 KVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 87 ~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
.+.+.+...+...|.|+|.+|+|||
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT 31 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKT 31 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHH
Confidence 4555566666678999999999999
No 167
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.40 E-value=0.33 Score=53.63 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=29.8
Q ss_pred CCcccchHHHHHHHHHhhhCC-ceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQ-VGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~-~~vi~I~G~gGiGKT 111 (647)
..+||-+..++.|.+.+..+. ...+-++|..|+|||
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKT 52 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKT 52 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHH
Confidence 557999888888888887765 466778999999999
No 168
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=92.38 E-value=0.66 Score=47.18 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=49.2
Q ss_pred CceEEEEEccCccCCC------------C----CCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcCC-------CCCCH
Q 039519 96 QVGIIGLYGMGGLLGA------------P----NDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDESW-------KNGSL 152 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT------------~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 152 (647)
.-+++-|+|.+|+||| . ..=..++||+...+|+.+++.+ +++.++.+.+.. ...+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCH
Confidence 4568899999999999 0 0113789999999999888765 456665432210 11233
Q ss_pred HHHH---HHHHHHhc-cCCeeEEEecCC
Q 039519 153 EDKA---SDIFRILS-KKKLLLLLDDIW 176 (647)
Q Consensus 153 ~~~~---~~l~~~l~-~~r~LlVlDdv~ 176 (647)
++.. ..+...+. ++--|||+|.+.
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 3333 33333343 344578888874
No 169
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=92.26 E-value=0.84 Score=44.11 Aligned_cols=81 Identities=14% Similarity=0.105 Sum_probs=49.4
Q ss_pred CceEEEEEccCccCCC----------CCCc------ceEEEEEEcCccCHHHHHHHHHHHhCCCCc-------CCCCCCH
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDF------DVVIWMVVSKDLQLEKIQERIGRRIGFLDE-------SWKNGSL 152 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F------~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------~~~~~~~ 152 (647)
.-.++.|+|.+|+||| ...- ..++|++....++...+.+. ....+...+ -....+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~-~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQL-AVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHH-HHHhccchhhhhccEEEEeCCCH
Confidence 3579999999999999 1223 56789998877776555433 233221110 0123455
Q ss_pred HHHHHHHHHHhc---c-CCeeEEEecCCC
Q 039519 153 EDKASDIFRILS---K-KKLLLLLDDIWE 177 (647)
Q Consensus 153 ~~~~~~l~~~l~---~-~r~LlVlDdv~~ 177 (647)
++....+.+..+ . +--|||+|.+..
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 666666666543 2 445888898853
No 170
>PRK12608 transcription termination factor Rho; Provisional
Probab=92.15 E-value=0.46 Score=48.92 Aligned_cols=92 Identities=9% Similarity=0.052 Sum_probs=54.9
Q ss_pred HHHHHHhhh-CCceEEEEEccCccCCC-----------CCCcce-EEEEEEcCc-cCHHHHHHHHHHHhCCCCcCCCCCC
Q 039519 86 DKVRRCLRE-EQVGIIGLYGMGGLLGA-----------PNDFDV-VIWMVVSKD-LQLEKIQERIGRRIGFLDESWKNGS 151 (647)
Q Consensus 86 ~~i~~~L~~-~~~~vi~I~G~gGiGKT-----------~~~F~~-~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~ 151 (647)
.++++.+.- +.-.-+.|+|.+|+||| .++-+. ++|+-+.+. ..+.++.+.+...+...........
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~ 200 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDE 200 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHH
Confidence 446666653 33346699999999999 233344 467677665 4688999998887654321001111
Q ss_pred ---HHHHHHHHHHHh--ccCCeeEEEecCCC
Q 039519 152 ---LEDKASDIFRIL--SKKKLLLLLDDIWE 177 (647)
Q Consensus 152 ---~~~~~~~l~~~l--~~~r~LlVlDdv~~ 177 (647)
.......+.+++ .+++++||+|++..
T Consensus 201 ~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 201 HIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 111122222333 47999999999964
No 171
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.14 E-value=1.9 Score=47.74 Aligned_cols=36 Identities=8% Similarity=0.199 Sum_probs=30.8
Q ss_pred CCcccchHHHHHHHHHhhhCCce-EEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVG-IIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~-vi~I~G~gGiGKT 111 (647)
..++|-+..++.+...+.++... .+-++|..|+|||
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKT 52 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKT 52 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHH
Confidence 56799999999999999876544 5779999999999
No 172
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=92.07 E-value=0.21 Score=43.88 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=29.3
Q ss_pred HHHhhhCCceEEEEEccCccCCC-----CCCcceEEEEEEcCc
Q 039519 89 RRCLREEQVGIIGLYGMGGLLGA-----PNDFDVVIWMVVSKD 126 (647)
Q Consensus 89 ~~~L~~~~~~vi~I~G~gGiGKT-----~~~F~~~~wv~~s~~ 126 (647)
-+.+..++..+|||-||+-+||| ..-+...-|+.+|.+
T Consensus 46 aEl~K~~Gh~lIGiRGmPRVGKTEsivAasVcAnKrW~f~SST 88 (192)
T PF11868_consen 46 AELFKEEGHKLIGIRGMPRVGKTESIVAASVCANKRWLFLSST 88 (192)
T ss_pred HHHHHhcCceEEeecCCCccCchhHHHHHhhhcCceEEEeeHH
Confidence 33445589999999999999999 444556679888864
No 173
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=91.90 E-value=0.39 Score=43.74 Aligned_cols=107 Identities=11% Similarity=0.155 Sum_probs=58.9
Q ss_pred cchHHHHHHHHHhhhCCc-eEEEEEccCccCCC------------C------------------CCcceEEEEEEcCc--
Q 039519 80 GLESTFDKVRRCLREEQV-GIIGLYGMGGLLGA------------P------------------NDFDVVIWMVVSKD-- 126 (647)
Q Consensus 80 Gr~~~~~~i~~~L~~~~~-~vi~I~G~gGiGKT------------~------------------~~F~~~~wv~~s~~-- 126 (647)
|-++..+.+.+.+..+.+ ..+-++|..|+||+ . .......|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 556667777777776654 46789999999998 1 12233444432221
Q ss_pred -cCHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHhccCCeeEEEecCCCc--cccccccCCCCCCCCCcEEEEecCc
Q 039519 127 -LQLEKIQERIGRRIGFLDESWKNGSLEDKASDIFRILSKKKLLLLLDDIWER--VDLTKVGVPFPDPENKSRIDFTTRF 203 (647)
Q Consensus 127 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~ 203 (647)
..+..+. .+...+.... ..+++=.+|+||++.. +....+...+......+++|++|++
T Consensus 81 ~i~i~~ir-~i~~~~~~~~------------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSP------------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred hhhHHHHH-HHHHHHHHHH------------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 2233222 3333332211 0135668899999874 3344444444444567888888876
Q ss_pred hH
Q 039519 204 LE 205 (647)
Q Consensus 204 ~~ 205 (647)
.+
T Consensus 142 ~~ 143 (162)
T PF13177_consen 142 PS 143 (162)
T ss_dssp GG
T ss_pred hH
Confidence 54
No 174
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.89 E-value=0.095 Score=58.42 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=30.3
Q ss_pred CCcccchHHHHHHHHHhhhCCc-eEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQV-GIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~-~vi~I~G~gGiGKT 111 (647)
..+||.+..++.|...+..+.+ ..+-++|..|+|||
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKT 52 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKT 52 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHH
Confidence 5679999999999888887654 45678999999999
No 175
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.82 E-value=0.36 Score=55.09 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=30.3
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
.+++||++++.++.+.|......-+.++|.+|+|||
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT 221 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKT 221 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHH
Confidence 467999999999999888754445568999999999
No 176
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=91.80 E-value=0.44 Score=50.31 Aligned_cols=34 Identities=29% Similarity=0.299 Sum_probs=27.2
Q ss_pred cccchHHHHHHHHHhhh-------------CCceEEEEEccCccCCC
Q 039519 78 TVGLESTFDKVRRCLRE-------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 78 ~vGr~~~~~~i~~~L~~-------------~~~~vi~I~G~gGiGKT 111 (647)
+.|+++.++++.+.+.. ...+-|.++|.+|+|||
T Consensus 133 i~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT 179 (389)
T PRK03992 133 IGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKT 179 (389)
T ss_pred hCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChH
Confidence 46999999999887642 23456889999999999
No 177
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.69 E-value=0.33 Score=56.52 Aligned_cols=36 Identities=19% Similarity=0.431 Sum_probs=28.9
Q ss_pred CCcccchHHHHHHHHHhhh---------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE---------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~---------~~~~vi~I~G~gGiGKT 111 (647)
..++|.+..++.+.+.+.. ....++.++|..|+|||
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT 610 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKT 610 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHH
Confidence 4568999999999888752 13457889999999999
No 178
>PRK06526 transposase; Provisional
Probab=91.64 E-value=0.12 Score=50.79 Aligned_cols=16 Identities=13% Similarity=-0.029 Sum_probs=13.5
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
+..-+.++|.+|+|||
T Consensus 97 ~~~nlll~Gp~GtGKT 112 (254)
T PRK06526 97 GKENVVFLGPPGTGKT 112 (254)
T ss_pred cCceEEEEeCCCCchH
Confidence 3456889999999999
No 179
>PRK12377 putative replication protein; Provisional
Probab=91.64 E-value=1.7 Score=42.62 Aligned_cols=16 Identities=13% Similarity=-0.081 Sum_probs=14.0
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
+...+.++|.+|+|||
T Consensus 100 ~~~~l~l~G~~GtGKT 115 (248)
T PRK12377 100 GCTNFVFSGKPGTGKN 115 (248)
T ss_pred cCCeEEEECCCCCCHH
Confidence 3467899999999999
No 180
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=91.61 E-value=1.6 Score=41.90 Aligned_cols=108 Identities=18% Similarity=0.145 Sum_probs=53.8
Q ss_pred ccc-hHHHHHHHHHhhhC---CceEEEEEccCccCCC----------CCC-cc-eEEEEEEcCccCHHHHHHHHHHHhCC
Q 039519 79 VGL-ESTFDKVRRCLREE---QVGIIGLYGMGGLLGA----------PND-FD-VVIWMVVSKDLQLEKIQERIGRRIGF 142 (647)
Q Consensus 79 vGr-~~~~~~i~~~L~~~---~~~vi~I~G~gGiGKT----------~~~-F~-~~~wv~~s~~~~~~~~~~~i~~~l~~ 142 (647)
+|- .+..-...+.+.++ ....+-|+|..|+||| ... -+ .++++ +..++...+...+..
T Consensus 12 ~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~------~~~~f~~~~~~~~~~ 85 (219)
T PF00308_consen 12 VGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL------SAEEFIREFADALRD 85 (219)
T ss_dssp -TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE------EHHHHHHHHHHHHHT
T ss_pred cCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceee------cHHHHHHHHHHHHHc
Confidence 464 23333444444432 3457889999999999 111 11 23343 334555566555532
Q ss_pred CCcCCCCCCHHHHHHHHHHHhccCCeeEEEecCCCccc---ccc-ccCCCC-CCCCCcEEEEecCch
Q 039519 143 LDESWKNGSLEDKASDIFRILSKKKLLLLLDDIWERVD---LTK-VGVPFP-DPENKSRIDFTTRFL 204 (647)
Q Consensus 143 ~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~---~~~-l~~~~~-~~~~gs~IivTTR~~ 204 (647)
. . ...+++.++ .-=+|++||+..... |+. +...+. ....|.+||+|++..
T Consensus 86 ~-------~----~~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~ 140 (219)
T PF00308_consen 86 G-------E----IEEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRP 140 (219)
T ss_dssp T-------S----HHHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-
T ss_pred c-------c----chhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCC
Confidence 1 1 223445555 344678899976321 211 111111 012466899999643
No 181
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=91.45 E-value=0.52 Score=51.73 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=30.4
Q ss_pred CCcccchHHHHHHHHHhhh------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~------~~~~vi~I~G~gGiGKT 111 (647)
+.-.|+++-.++|.+++.- -+-+++..+|++|||||
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKT 452 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKT 452 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcc
Confidence 4458999999999998762 25679999999999999
No 182
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.45 E-value=2.5 Score=47.35 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=30.6
Q ss_pred CCcccchHHHHHHHHHhhhCCc-eEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQV-GIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~-~vi~I~G~gGiGKT 111 (647)
..++|.+...+.|...+..+.. ..+-++|..|+|||
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKt 52 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKT 52 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChH
Confidence 5679999999999998887643 56778999999999
No 183
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=91.37 E-value=0.44 Score=48.85 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=30.7
Q ss_pred CcccchHHHHHHHHHhhh------CCceEEEEEccCccCCC
Q 039519 77 PTVGLESTFDKVRRCLRE------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 77 ~~vGr~~~~~~i~~~L~~------~~~~vi~I~G~gGiGKT 111 (647)
.++|.++.++++++.+.. ...++++++|.+|+|||
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKS 92 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKS 92 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHH
Confidence 689999999999998864 24678999999999999
No 184
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.28 E-value=0.5 Score=55.27 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=29.2
Q ss_pred CCcccchHHHHHHHHHhhhC---------CceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREE---------QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~---------~~~vi~I~G~gGiGKT 111 (647)
..++|.+..++.+...+... ...++.++|..|+|||
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt 609 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKT 609 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHH
Confidence 45789999999998888641 1457889999999999
No 185
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.27 E-value=0.57 Score=40.48 Aligned_cols=101 Identities=19% Similarity=0.250 Sum_probs=48.4
Q ss_pred ccccccEEEEEeecccccccccCC-CCcceeeEEeccCccccccCcc-ccccccCCCeeeecCCCCCcccc-chhcCccC
Q 039519 391 IQNWRNVRRMSLMKNKIENLSELQ-PALTFFLFFNMSNNHLLWKLPL-GISTLVSLEHLDLSSTAITHLPI-DLQKLVNL 467 (647)
Q Consensus 391 ~~~~~~l~~L~l~~n~i~~l~~~~-~~l~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~L~~~~l~~lp~-~~~~l~~L 467 (647)
+.++++++.+.+.. .+..++... .+++.|+.+.+..+ +..++. .+..+..|+.+.+.. .+..++. .+..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 44556677777663 455555543 55556777777664 333332 355666677777755 5554443 34457777
Q ss_pred cEEeecccccCCcCchhhhcCCCCCcEEecc
Q 039519 468 KCLNLQYMYNLNQFPRLVISAFSKLQVLRMF 498 (647)
Q Consensus 468 ~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~ 498 (647)
+.+.+.. .+..++...+... +|+.+.+.
T Consensus 84 ~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPS--NITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred cccccCc--cccEEchhhhcCC-CceEEEEC
Confidence 7777755 3456666656665 66666544
No 186
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.03 E-value=0.77 Score=50.76 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=30.9
Q ss_pred CCcccchHHHHHHHHHhhhCCce-EEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVG-IIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~-vi~I~G~gGiGKT 111 (647)
..+||.+..++.|.+.+..+.+. .+.++|..|+|||
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKT 49 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKT 49 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHH
Confidence 56799999999999999876654 4689999999999
No 187
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=91.00 E-value=0.68 Score=50.44 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=30.6
Q ss_pred CCcccchHHHHHHHHHhhhCCce-EEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVG-IIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~-vi~I~G~gGiGKT 111 (647)
..+||-+...+.+...+..+... ++-++|..|+|||
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKT 50 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKT 50 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHH
Confidence 55799999999999999877654 5678999999999
No 188
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=90.86 E-value=0.39 Score=45.81 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=29.0
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQER 135 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~ 135 (647)
.-+++-|+|.+|+||| ...-..++|++... ++...+.+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~-~~~~rl~~~ 59 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG-LSPERFKQI 59 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CCHHHHHHH
Confidence 3579999999999999 23346789999875 666655543
No 189
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=90.85 E-value=1.1 Score=45.96 Aligned_cols=80 Identities=15% Similarity=0.177 Sum_probs=48.6
Q ss_pred CceEEEEEccCccCCC------------C---C-CcceEEEEEEcCccCHHHHHHHHHHHhCCCCcC-------CCCCCH
Q 039519 96 QVGIIGLYGMGGLLGA------------P---N-DFDVVIWMVVSKDLQLEKIQERIGRRIGFLDES-------WKNGSL 152 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT------------~---~-~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 152 (647)
.-+++-|+|.+|+||| . . .-..++||+...+|++.++.+ +++.++.+.+. ....+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCH
Confidence 4568889999999999 0 1 124789999999999888766 45566543211 122333
Q ss_pred HHHHHH---HHHHhc-cCCeeEEEecCC
Q 039519 153 EDKASD---IFRILS-KKKLLLLLDDIW 176 (647)
Q Consensus 153 ~~~~~~---l~~~l~-~~r~LlVlDdv~ 176 (647)
++.... +...+. .+--|||+|.+-
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 333322 222332 234477888874
No 190
>PRK06620 hypothetical protein; Validated
Probab=90.83 E-value=0.76 Score=44.01 Aligned_cols=14 Identities=7% Similarity=-0.204 Sum_probs=12.9
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
+.+-|||.+|+|||
T Consensus 45 ~~l~l~Gp~G~GKT 58 (214)
T PRK06620 45 FTLLIKGPSSSGKT 58 (214)
T ss_pred ceEEEECCCCCCHH
Confidence 56899999999999
No 191
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=90.80 E-value=0.53 Score=54.17 Aligned_cols=94 Identities=17% Similarity=0.134 Sum_probs=51.4
Q ss_pred CCcccchHHHHHHHHHhhh------C---CceEEEEEccCccCCC-------CCCcceEEEEEEcCccCHHHHHHHHHHH
Q 039519 76 EPTVGLESTFDKVRRCLRE------E---QVGIIGLYGMGGLLGA-------PNDFDVVIWMVVSKDLQLEKIQERIGRR 139 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~------~---~~~vi~I~G~gGiGKT-------~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 139 (647)
..++|.+..++.+.+.+.. + ...++.++|+.|+||| +..+...+.++.++-.+.. .+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~----~~~~l 529 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKH----TVSRL 529 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcc----cHHHH
Confidence 4568988888888887763 1 2346789999999999 2223344555554422211 12222
Q ss_pred hCCCCcCCCCCCHHHHHHHHHHHhccC-CeeEEEecCCC
Q 039519 140 IGFLDESWKNGSLEDKASDIFRILSKK-KLLLLLDDIWE 177 (647)
Q Consensus 140 l~~~~~~~~~~~~~~~~~~l~~~l~~~-r~LlVlDdv~~ 177 (647)
++....-...... ..+.+.++.+ .-+++||+++.
T Consensus 530 ig~~~gyvg~~~~----~~l~~~~~~~p~~VvllDEiek 564 (731)
T TIGR02639 530 IGAPPGYVGFEQG----GLLTEAVRKHPHCVLLLDEIEK 564 (731)
T ss_pred hcCCCCCcccchh----hHHHHHHHhCCCeEEEEechhh
Confidence 2222111111111 2233444433 45999999986
No 192
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=90.57 E-value=1.3 Score=44.42 Aligned_cols=131 Identities=16% Similarity=0.178 Sum_probs=73.2
Q ss_pred CCcccchHHHHHHHHHhhh----CCceEEEEEccCccCCC---------CCCcc-eEEEEEEcCccCH-HHHHHHHHHHh
Q 039519 76 EPTVGLESTFDKVRRCLRE----EQVGIIGLYGMGGLLGA---------PNDFD-VVIWMVVSKDLQL-EKIQERIGRRI 140 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~----~~~~vi~I~G~gGiGKT---------~~~F~-~~~wv~~s~~~~~-~~~~~~i~~~l 140 (647)
..++|-.++.+++..++.. ++...|.|+|+.|.||| .+.|. ..+-|......-. +-.++.|.+++
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql 103 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQL 103 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHH
Confidence 4578988888888888764 45667789999999999 23453 3444555444322 12344444444
Q ss_pred CCCCc--CCCCCCHHHHHHHHHHHhcc------CCeeEEEecCCCccc------c-ccccCCCCCCCCCcEEEEecCchH
Q 039519 141 GFLDE--SWKNGSLEDKASDIFRILSK------KKLLLLLDDIWERVD------L-TKVGVPFPDPENKSRIDFTTRFLE 205 (647)
Q Consensus 141 ~~~~~--~~~~~~~~~~~~~l~~~l~~------~r~LlVlDdv~~~~~------~-~~l~~~~~~~~~gs~IivTTR~~~ 205 (647)
...-. .....+..+...++-+.|+. -++..|+|..+--.. + .-|...-....+-|-|-+|||-..
T Consensus 104 ~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 104 ALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI 183 (408)
T ss_pred HHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccH
Confidence 32111 11233455555666666643 357888888764211 1 111111111234577889999643
Q ss_pred H
Q 039519 206 I 206 (647)
Q Consensus 206 v 206 (647)
+
T Consensus 184 l 184 (408)
T KOG2228|consen 184 L 184 (408)
T ss_pred H
Confidence 3
No 193
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=90.54 E-value=0.6 Score=45.15 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=27.2
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQ 133 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~ 133 (647)
.-.++.|+|.+|+||| ...-..++|++.. .++...+.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e-~~~~~r~~ 68 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE-GLSPERFK 68 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC-CCCHHHHH
Confidence 3569999999999999 2234678899887 56655543
No 194
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.51 E-value=0.2 Score=29.75 Aligned_cols=19 Identities=37% Similarity=0.583 Sum_probs=11.0
Q ss_pred cCCCeeeecCCCCCccccc
Q 039519 442 VSLEHLDLSSTAITHLPID 460 (647)
Q Consensus 442 ~~L~~L~L~~~~l~~lp~~ 460 (647)
++|++|+|++|.|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666665543
No 195
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.51 E-value=0.2 Score=29.75 Aligned_cols=19 Identities=37% Similarity=0.583 Sum_probs=11.0
Q ss_pred cCCCeeeecCCCCCccccc
Q 039519 442 VSLEHLDLSSTAITHLPID 460 (647)
Q Consensus 442 ~~L~~L~L~~~~l~~lp~~ 460 (647)
++|++|+|++|.|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666665543
No 196
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=90.46 E-value=0.72 Score=43.45 Aligned_cols=79 Identities=15% Similarity=0.090 Sum_probs=42.5
Q ss_pred ceEEEEEccCccCCC----------CCCcceEEEEEEcCc-cCHHHHHHHHHHHhCCCCcCC-CCCCHHHHHHHHHHHhc
Q 039519 97 VGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKD-LQLEKIQERIGRRIGFLDESW-KNGSLEDKASDIFRILS 164 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~~l~ 164 (647)
.+||.++|..|+||| ...=..+..|+.... ....+-++..++.++.+.... ...+..+.....-+..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 368999999999999 222345667775322 244556777777777542111 12234444333333333
Q ss_pred cCC-eeEEEecC
Q 039519 165 KKK-LLLLLDDI 175 (647)
Q Consensus 165 ~~r-~LlVlDdv 175 (647)
.++ =+|++|=.
T Consensus 81 ~~~~D~vlIDT~ 92 (196)
T PF00448_consen 81 KKGYDLVLIDTA 92 (196)
T ss_dssp HTTSSEEEEEE-
T ss_pred hcCCCEEEEecC
Confidence 333 36666665
No 197
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.44 E-value=0.86 Score=50.96 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=30.9
Q ss_pred CCcccchHHHHHHHHHhhhCCce-EEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVG-IIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~-vi~I~G~gGiGKT 111 (647)
..+||.+...+.|...+..+... .+-++|..|+|||
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKt 53 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKT 53 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHH
Confidence 56799999999999999877654 4788999999999
No 198
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.44 E-value=0.18 Score=26.60 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=10.6
Q ss_pred ccCcEEeecccccCCcCc
Q 039519 465 VNLKCLNLQYMYNLNQFP 482 (647)
Q Consensus 465 ~~L~~L~l~~~~~l~~lp 482 (647)
++|+.|++++| .+.++|
T Consensus 1 ~~L~~L~l~~n-~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNN-RLTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCC-CCCCCc
Confidence 47899999998 477765
No 199
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.21 E-value=0.74 Score=51.19 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=30.7
Q ss_pred CCcccchHHHHHHHHHhhhCCc-eEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQV-GIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~-~vi~I~G~gGiGKT 111 (647)
..+||.+...+.|.+.+..+.+ ..+-++|..|+|||
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKt 52 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKT 52 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHH
Confidence 5689999999999999887765 45678999999999
No 200
>CHL00181 cbbX CbbX; Provisional
Probab=90.16 E-value=1.2 Score=44.86 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=23.7
Q ss_pred CcccchHHHHHHHHHhh--------h-------CCceEEEEEccCccCCC
Q 039519 77 PTVGLESTFDKVRRCLR--------E-------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 77 ~~vGr~~~~~~i~~~L~--------~-------~~~~vi~I~G~gGiGKT 111 (647)
.++|.++.+++|.++.. . .....+.++|.+|+|||
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT 73 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKT 73 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHH
Confidence 57888777776655432 0 11234778999999999
No 201
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.16 E-value=0.61 Score=40.31 Aligned_cols=97 Identities=19% Similarity=0.307 Sum_probs=52.5
Q ss_pred cccccccEEEEEeecccccccccCC-CCcceeeEEeccCccccccCc-cccccccCCCeeeecCCCCCcccc-chhcCcc
Q 039519 390 EIQNWRNVRRMSLMKNKIENLSELQ-PALTFFLFFNMSNNHLLWKLP-LGISTLVSLEHLDLSSTAITHLPI-DLQKLVN 466 (647)
Q Consensus 390 ~~~~~~~l~~L~l~~n~i~~l~~~~-~~l~~L~~L~l~~~~~~~~lp-~~~~~L~~L~~L~L~~~~l~~lp~-~~~~l~~ 466 (647)
.+..+.+++.+.+..+ +..++... .+++.++.+.+..+ +..++ ..+..+.+|+.+.+..+ +..++. .+.++ +
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~ 104 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-N 104 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T
T ss_pred hccccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccccccccccCcc-ccEEchhhhcCC-C
Confidence 4667778999998775 77776654 66667899998764 33343 34667899999999775 766653 45666 8
Q ss_pred CcEEeecccccCCcCchhhhcCCCCCc
Q 039519 467 LKCLNLQYMYNLNQFPRLVISAFSKLQ 493 (647)
Q Consensus 467 L~~L~l~~~~~l~~lp~~~i~~l~~L~ 493 (647)
|+.+.+.. .+..++...+.+.++|+
T Consensus 105 l~~i~~~~--~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 105 LKEINIPS--NITKIEENAFKNCTKLK 129 (129)
T ss_dssp --EEE-TT--B-SS----GGG------
T ss_pred ceEEEECC--CccEECCccccccccCC
Confidence 99998876 56788887777766653
No 202
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.11 E-value=1.1 Score=48.75 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=30.1
Q ss_pred CCcccchHHHHHHHHHhhhCCce-EEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVG-IIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~-vi~I~G~gGiGKT 111 (647)
..++|-+..++.+.+.+..+... .+-++|..|+|||
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKT 52 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKT 52 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHH
Confidence 55799999999999999876543 5678999999999
No 203
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=89.74 E-value=1.2 Score=44.77 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=23.5
Q ss_pred CcccchHHHHHHHHHhh--------h-CC------ceEEEEEccCccCCC
Q 039519 77 PTVGLESTFDKVRRCLR--------E-EQ------VGIIGLYGMGGLLGA 111 (647)
Q Consensus 77 ~~vGr~~~~~~i~~~L~--------~-~~------~~vi~I~G~gGiGKT 111 (647)
.++|.++.+++|.+... . -+ ..-+.++|.+|+|||
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT 72 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKT 72 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHH
Confidence 46888777777655422 0 11 224779999999999
No 204
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.62 E-value=0.26 Score=54.81 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=30.0
Q ss_pred CCcccchHHHHHHHHHhhhC-----CceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREE-----QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~-----~~~vi~I~G~gGiGKT 111 (647)
..++|-+..++++..++... ..+++.|+|.+|+|||
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKT 124 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKS 124 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHH
Confidence 55789999999999888752 3457999999999999
No 205
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=89.52 E-value=0.35 Score=49.41 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=14.5
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
....++|||.+|.|||
T Consensus 147 ~PlgllL~GPPGcGKT 162 (413)
T PLN00020 147 VPLILGIWGGKGQGKS 162 (413)
T ss_pred CCeEEEeeCCCCCCHH
Confidence 4678999999999999
No 206
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=89.26 E-value=1.6 Score=48.39 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=30.5
Q ss_pred CCcccchHHHHHHHHHhhhCC-ceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQ-VGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~-~~vi~I~G~gGiGKT 111 (647)
..+||.+...+.+.+.+..+. ...+-++|..|+|||
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKT 52 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKT 52 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHH
Confidence 568999999999999998764 445678999999999
No 207
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=88.77 E-value=0.86 Score=46.76 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=26.1
Q ss_pred cccchHHHHHHHHHhhh-CCceE-EEEEccCccCCC
Q 039519 78 TVGLESTFDKVRRCLRE-EQVGI-IGLYGMGGLLGA 111 (647)
Q Consensus 78 ~vGr~~~~~~i~~~L~~-~~~~v-i~I~G~gGiGKT 111 (647)
++|-+....++..+... ++..- +-++|++|+|||
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gkt 38 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKT 38 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHH
Confidence 56677777788777774 44444 889999999999
No 208
>PRK05642 DNA replication initiation factor; Validated
Probab=88.74 E-value=0.3 Score=47.56 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=13.0
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
..+.|+|..|+|||
T Consensus 46 ~~l~l~G~~G~GKT 59 (234)
T PRK05642 46 SLIYLWGKDGVGRS 59 (234)
T ss_pred CeEEEECCCCCCHH
Confidence 57889999999999
No 209
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=88.67 E-value=2.3 Score=43.60 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=32.8
Q ss_pred CceEEEEEccCccCCC------------CCC----cceEEEEEEcCccCHHHHHHHHHHHhC
Q 039519 96 QVGIIGLYGMGGLLGA------------PND----FDVVIWMVVSKDLQLEKIQERIGRRIG 141 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT------------~~~----F~~~~wv~~s~~~~~~~~~~~i~~~l~ 141 (647)
...++-|+|.+|+||| ... =..++||+...+|++..+.+.. +.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~-~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMA-EALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHH-HHcC
Confidence 4578899999999999 110 1378999999988887776543 4444
No 210
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=88.63 E-value=1.3 Score=50.01 Aligned_cols=36 Identities=11% Similarity=0.225 Sum_probs=30.3
Q ss_pred CCcccchHHHHHHHHHhhhCCc-eEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQV-GIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~-~vi~I~G~gGiGKT 111 (647)
..+||.+..++.+...+..+++ ..+-++|..|+|||
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKT 54 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKT 54 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHH
Confidence 5579999999999999987654 45678999999999
No 211
>CHL00176 ftsH cell division protein; Validated
Probab=88.50 E-value=1.9 Score=48.40 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=25.7
Q ss_pred CCcccchHHHHHHHHHhh---hC---------CceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLR---EE---------QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~---~~---------~~~vi~I~G~gGiGKT 111 (647)
..++|.++..+++.+.+. .. ..+-|.++|.+|+|||
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT 230 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKT 230 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHH
Confidence 456898887777766542 21 2345889999999999
No 212
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=88.40 E-value=1.5 Score=46.35 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=26.6
Q ss_pred cccchHHHHHHHHHhhh-------------CCceEEEEEccCccCCC
Q 039519 78 TVGLESTFDKVRRCLRE-------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 78 ~vGr~~~~~~i~~~L~~-------------~~~~vi~I~G~gGiGKT 111 (647)
+.|.+..+++|.+.+.- ...+-|.++|.+|+|||
T Consensus 147 igGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT 193 (398)
T PTZ00454 147 IGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKT 193 (398)
T ss_pred cCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHH
Confidence 47889888888876541 13567889999999999
No 213
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=88.39 E-value=2.9 Score=48.18 Aligned_cols=99 Identities=19% Similarity=0.218 Sum_probs=58.5
Q ss_pred cCCeeEEEecCCCccc---ccc----ccCCCCCCCCCcEEEEecCchHHhhhcccce----------------eEecccc
Q 039519 165 KKKLLLLLDDIWERVD---LTK----VGVPFPDPENKSRIDFTTRFLEICSAMQAHE----------------FLKVEDV 221 (647)
Q Consensus 165 ~~r~LlVlDdv~~~~~---~~~----l~~~~~~~~~gs~IivTTR~~~v~~~~~~~~----------------~~~~~~~ 221 (647)
+.+-|+++|..-...+ -.. +...+. ..|+.+|+||....+........ .|++...
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~p~Ykl~~G 478 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLSPTYKLLKG 478 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCceEEEECCC
Confidence 4789999999976422 111 112222 24788999999887743221111 1222111
Q ss_pred ccCCCChHHHHHHHHHHhcCCchhHHHHhhHhhcCCCHhHHHHHHHHHhh
Q 039519 222 LKNHPNIPELARSVAQECAGLPLALITIGRVMACKKTPQEWHYAIQVLRI 271 (647)
Q Consensus 222 ~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l~~ 271 (647)
. .-...|-+|++++ |+|-.+.--|..+.+ .....++.+++.+..
T Consensus 479 ~----~g~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 479 I----PGESYAFEIAQRY-GIPHFIIEQAKTFYG-EFKEEINVLIEKLSA 522 (771)
T ss_pred C----CCCcHHHHHHHHh-CcCHHHHHHHHHHHH-hhHHHHHHHHHHHHH
Confidence 1 1134677788876 788888888877765 455567766666654
No 214
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=88.33 E-value=1.3 Score=42.97 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=29.7
Q ss_pred CceEEEEEccCccCCC-----------CCC-----cceEEEEEEcCccCHHHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA-----------PND-----FDVVIWMVVSKDLQLEKIQER 135 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT-----------~~~-----F~~~~wv~~s~~~~~~~~~~~ 135 (647)
.-.++.|+|.+|+||| ... -..++|++....++...+.+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~ 73 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQI 73 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHH
Confidence 4578999999999999 111 368899998887776555443
No 215
>PRK09183 transposase/IS protein; Provisional
Probab=88.07 E-value=0.53 Score=46.58 Aligned_cols=15 Identities=27% Similarity=0.157 Sum_probs=13.0
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
...+.|+|.+|+|||
T Consensus 102 ~~~v~l~Gp~GtGKT 116 (259)
T PRK09183 102 NENIVLLGPSGVGKT 116 (259)
T ss_pred CCeEEEEeCCCCCHH
Confidence 356779999999999
No 216
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=88.07 E-value=1.5 Score=49.55 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=27.5
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
.+++|||+++.++++.|..-.-.=-.++|-+|+|||
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKT 205 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKT 205 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHH
Confidence 567999999999999997521111235899999999
No 217
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=87.96 E-value=1 Score=44.43 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=25.1
Q ss_pred cccchHHHHHHHHHhhh-------CCceEEEEEccCccCCC
Q 039519 78 TVGLESTFDKVRRCLRE-------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 78 ~vGr~~~~~~i~~~L~~-------~~~~vi~I~G~gGiGKT 111 (647)
++|..-..+.|+..+.+ .+.-|++.+|.+|+||.
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN 124 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKN 124 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchh
Confidence 46766666666666653 35679999999999998
No 218
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=87.94 E-value=4.3 Score=41.83 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=34.3
Q ss_pred CceEEEEEccCccCCC---------CC-------CcceEEEEEEcCccCHHHHHHHHHHHhCCC
Q 039519 96 QVGIIGLYGMGGLLGA---------PN-------DFDVVIWMVVSKDLQLEKIQERIGRRIGFL 143 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT---------~~-------~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 143 (647)
...++-|+|.+|+||| .. .-..++||+...+|..+++. ++++.++.+
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~ 184 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLN 184 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCC
Confidence 4568889999999999 01 11268999999999988775 445665543
No 219
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=87.86 E-value=0.81 Score=51.58 Aligned_cols=106 Identities=16% Similarity=0.241 Sum_probs=62.7
Q ss_pred CCcccchHHHHHHHHHhhh---------CCceEEEEEccCccCCC-------CCCc---ceEEEEEEcCccCHHHHHHHH
Q 039519 76 EPTVGLESTFDKVRRCLRE---------EQVGIIGLYGMGGLLGA-------PNDF---DVVIWMVVSKDLQLEKIQERI 136 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~---------~~~~vi~I~G~gGiGKT-------~~~F---~~~~wv~~s~~~~~~~~~~~i 136 (647)
..++|.+..++.+.+.+.. ...++.-..|+.||||| ..-| +..+-++.|+-.. -+.+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E----kHsV 566 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME----KHSV 566 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH----HHHH
Confidence 5679999999999988863 14567778999999999 4455 3445555544221 2233
Q ss_pred HHHhCCCCcCCCCCCHHHHHHHHHHHhccCCe-eEEEecCCC--ccccccccCCCC
Q 039519 137 GRRIGFLDESWKNGSLEDKASDIFRILSKKKL-LLLLDDIWE--RVDLTKVGVPFP 189 (647)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~-LlVlDdv~~--~~~~~~l~~~~~ 189 (647)
.+-++.+++=+.-.. ...+-+.++.++| +|.||.|.. ++.++-|.+.+.
T Consensus 567 SrLIGaPPGYVGyee----GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 567 SRLIGAPPGYVGYEE----GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred HHHhCCCCCCceecc----ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 333443322111111 2245556667877 667799975 455555544443
No 220
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=87.85 E-value=2.4 Score=46.40 Aligned_cols=36 Identities=11% Similarity=0.117 Sum_probs=25.0
Q ss_pred CCcccchHHHHHHHHHhh---h---------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLR---E---------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~---~---------~~~~vi~I~G~gGiGKT 111 (647)
..++|.+..++++.+.+. . ...+-+.++|.+|+|||
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT 102 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKT 102 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHH
Confidence 345788887777665443 1 12334788999999999
No 221
>PRK07261 topology modulation protein; Provisional
Probab=87.82 E-value=0.84 Score=41.98 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHhccCCeeEEEecCCCc
Q 039519 150 GSLEDKASDIFRILSKKKLLLLLDDIWER 178 (647)
Q Consensus 150 ~~~~~~~~~l~~~l~~~r~LlVlDdv~~~ 178 (647)
.+.++....+.+.+.+.+ .|+|+....
T Consensus 43 ~~~~~~~~~~~~~~~~~~--wIidg~~~~ 69 (171)
T PRK07261 43 RDDDDMIADISNFLLKHD--WIIDGNYSW 69 (171)
T ss_pred CCHHHHHHHHHHHHhCCC--EEEcCcchh
Confidence 345566667777777666 677887543
No 222
>PRK04296 thymidine kinase; Provisional
Probab=87.79 E-value=0.24 Score=46.45 Aligned_cols=104 Identities=13% Similarity=-0.027 Sum_probs=54.6
Q ss_pred eEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHhccCC
Q 039519 98 GIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDESWKNGSLEDKASDIFRILSKKK 167 (647)
Q Consensus 98 ~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r 167 (647)
.++.|+|..|.||| ..+-..++.+. ..++.+.....++++++............+....+++ ..++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEKI 79 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCCC
Confidence 46788999999999 22222333331 2223233344455666543221112344555555555 23344
Q ss_pred eeEEEecCCCc--cccccccCCCCCCCCCcEEEEecCchHH
Q 039519 168 LLLLLDDIWER--VDLTKVGVPFPDPENKSRIDFTTRFLEI 206 (647)
Q Consensus 168 ~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~v 206 (647)
-+||+|.+.-- +++..+...+ ...|..|++|.++.+.
T Consensus 80 dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 80 DCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred CEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 58999999532 2222222211 2357789999887443
No 223
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=87.69 E-value=0.98 Score=48.95 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=27.5
Q ss_pred CCcccchHHHHHHHHHhhh-------------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE-------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~-------------~~~~vi~I~G~gGiGKT 111 (647)
..+.|.+..+++|.+.+.. ...+-|.++|.+|+|||
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT 230 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKT 230 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHH
Confidence 3457899999998887641 13455889999999999
No 224
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=87.65 E-value=0.92 Score=51.87 Aligned_cols=36 Identities=14% Similarity=0.240 Sum_probs=28.8
Q ss_pred CCcccchHHHHHHHHHhhh---------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE---------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~---------~~~~vi~I~G~gGiGKT 111 (647)
..++|.++.++.+.+.+.. .....+-++|++|+|||
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT 502 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKT 502 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHH
Confidence 4568999999998888762 12457889999999999
No 225
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=87.41 E-value=0.71 Score=48.81 Aligned_cols=41 Identities=20% Similarity=0.129 Sum_probs=34.5
Q ss_pred CCeeEEEecCCCccccccccCCCCCCCCCcEEEEecCchHHh
Q 039519 166 KKLLLLLDDIWERVDLTKVGVPFPDPENKSRIDFTTRFLEIC 207 (647)
Q Consensus 166 ~r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~ 207 (647)
++.+++||.|.....|+.....+.+.++. +|++|+.+..+.
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll 134 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLL 134 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhh
Confidence 77899999999999999887777777666 899999877663
No 226
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=87.41 E-value=5.7 Score=45.96 Aligned_cols=103 Identities=20% Similarity=0.197 Sum_probs=59.0
Q ss_pred cCCeeEEEecCCCcccc---ccc----cCCCCCCCCCcEEEEecCchHHhhhccccee---Eec--c-cccc------CC
Q 039519 165 KKKLLLLLDDIWERVDL---TKV----GVPFPDPENKSRIDFTTRFLEICSAMQAHEF---LKV--E-DVLK------NH 225 (647)
Q Consensus 165 ~~r~LlVlDdv~~~~~~---~~l----~~~~~~~~~gs~IivTTR~~~v~~~~~~~~~---~~~--~-~~~~------~~ 225 (647)
+.+-|+++|..-...+. ..+ ...+. ..|+.+|+||...++......... ..+ . .... .-
T Consensus 406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d~~~l~~~Ykl~~G 483 (782)
T PRK00409 406 DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEFDEETLRPTYRLLIG 483 (782)
T ss_pred CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEEecCcCcEEEEEeeC
Confidence 47789999999754221 112 12221 247889999999887654322211 111 0 0000 00
Q ss_pred CChHHHHHHHHHHhcCCchhHHHHhhHhhcCCCHhHHHHHHHHHhh
Q 039519 226 PNIPELARSVAQECAGLPLALITIGRVMACKKTPQEWHYAIQVLRI 271 (647)
Q Consensus 226 ~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l~~ 271 (647)
..-...|-+|++++ |+|-.+.--|..+.. .....++.+++.+..
T Consensus 484 ~~g~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~l~~ 527 (782)
T PRK00409 484 IPGKSNAFEIAKRL-GLPENIIEEAKKLIG-EDKEKLNELIASLEE 527 (782)
T ss_pred CCCCcHHHHHHHHh-CcCHHHHHHHHHHHh-hhhhHHHHHHHHHHH
Confidence 11234677788876 788888888877765 455567776666654
No 227
>CHL00095 clpC Clp protease ATP binding subunit
Probab=87.28 E-value=1.6 Score=50.86 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=28.2
Q ss_pred CCcccchHHHHHHHHHhhhC---------CceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREE---------QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~---------~~~vi~I~G~gGiGKT 111 (647)
..++|.+..++.+.+.+... ...++-++|+.|+|||
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt 553 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKT 553 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHH
Confidence 56789999999998877531 1345678999999999
No 228
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.20 E-value=0.52 Score=27.85 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=17.7
Q ss_pred CccCcEEeecccccCCcCchhhh
Q 039519 464 LVNLKCLNLQYMYNLNQFPRLVI 486 (647)
Q Consensus 464 l~~L~~L~l~~~~~l~~lp~~~i 486 (647)
+++|++|+|++| .+..+|.+++
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHHc
Confidence 468899999988 7888888744
No 229
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.20 E-value=0.52 Score=27.85 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=17.7
Q ss_pred CccCcEEeecccccCCcCchhhh
Q 039519 464 LVNLKCLNLQYMYNLNQFPRLVI 486 (647)
Q Consensus 464 l~~L~~L~l~~~~~l~~lp~~~i 486 (647)
+++|++|+|++| .+..+|.+++
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHHc
Confidence 468899999988 7888888744
No 230
>PRK10865 protein disaggregation chaperone; Provisional
Probab=87.11 E-value=1.5 Score=51.33 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=28.2
Q ss_pred CCcccchHHHHHHHHHhhh--------C-CceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE--------E-QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~--------~-~~~vi~I~G~gGiGKT 111 (647)
..++|.+..++.+...+.. + ...++.++|..|+|||
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT 612 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKT 612 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHH
Confidence 4568999998888887753 1 1257889999999999
No 231
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=87.04 E-value=3.9 Score=41.76 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=32.0
Q ss_pred CceEEEEEccCccCCC-------C-CC----c----ceEEEEEEcCccCHHHHHHHHHHHhCC
Q 039519 96 QVGIIGLYGMGGLLGA-------P-ND----F----DVVIWMVVSKDLQLEKIQERIGRRIGF 142 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT-------~-~~----F----~~~~wv~~s~~~~~~~~~~~i~~~l~~ 142 (647)
...++.|+|.+|+||| . -. . ..++||+....+...++. .+++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~-~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLL-AIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 4678999999999999 1 01 1 256999988888877643 34555543
No 232
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=86.98 E-value=5.2 Score=40.79 Aligned_cols=36 Identities=8% Similarity=0.169 Sum_probs=31.6
Q ss_pred CCcccchHHHHHHHHHhhhCCc-eEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQV-GIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~-~vi~I~G~gGiGKT 111 (647)
..++|.+..++.+.+.+..+++ ...-++|..|+||+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~ 40 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRK 40 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHH
Confidence 4578999999999999988764 78899999999998
No 233
>PRK08118 topology modulation protein; Reviewed
Probab=86.87 E-value=0.22 Score=45.58 Aligned_cols=14 Identities=36% Similarity=0.275 Sum_probs=12.5
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
..|.|+|++|+|||
T Consensus 2 ~rI~I~G~~GsGKS 15 (167)
T PRK08118 2 KKIILIGSGGSGKS 15 (167)
T ss_pred cEEEEECCCCCCHH
Confidence 35889999999999
No 234
>PRK09354 recA recombinase A; Provisional
Probab=86.86 E-value=1.3 Score=45.56 Aligned_cols=77 Identities=10% Similarity=0.098 Sum_probs=51.4
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcC---CCCCCHHHHHHHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDES---WKNGSLEDKASDIFRI 162 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~ 162 (647)
.-+++-|+|.+|+||| ...-..++||+..+.++.. .++.++.+.+. .+..+.++....+...
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~l 133 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADTL 133 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 4578999999999999 2223577899988877753 34555543221 1334566667777666
Q ss_pred hcc-CCeeEEEecCCC
Q 039519 163 LSK-KKLLLLLDDIWE 177 (647)
Q Consensus 163 l~~-~r~LlVlDdv~~ 177 (647)
++. .--+||+|-|-.
T Consensus 134 i~s~~~~lIVIDSvaa 149 (349)
T PRK09354 134 VRSGAVDLIVVDSVAA 149 (349)
T ss_pred hhcCCCCEEEEeChhh
Confidence 643 566899999853
No 235
>PRK06835 DNA replication protein DnaC; Validated
Probab=86.81 E-value=0.76 Score=47.05 Aligned_cols=15 Identities=20% Similarity=0.138 Sum_probs=13.5
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..-+.++|..|+|||
T Consensus 183 ~~~Lll~G~~GtGKT 197 (329)
T PRK06835 183 NENLLFYGNTGTGKT 197 (329)
T ss_pred CCcEEEECCCCCcHH
Confidence 367999999999999
No 236
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=86.78 E-value=0.62 Score=42.00 Aligned_cols=47 Identities=17% Similarity=0.108 Sum_probs=28.0
Q ss_pred HHHHHhcc-CCeeEEEecCCCc-----cccccccCCCCCCCCCcEEEEecCch
Q 039519 158 DIFRILSK-KKLLLLLDDIWER-----VDLTKVGVPFPDPENKSRIDFTTRFL 204 (647)
Q Consensus 158 ~l~~~l~~-~r~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~IivTTR~~ 204 (647)
..++.+.. .-=|+|||++.-. ...+.+...+.....+.-+|+|.|+.
T Consensus 86 ~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 86 FAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 34444444 4459999999643 12223333334445567899999974
No 237
>PRK07952 DNA replication protein DnaC; Validated
Probab=86.51 E-value=5.4 Score=38.94 Aligned_cols=78 Identities=19% Similarity=0.192 Sum_probs=40.5
Q ss_pred HHHHHHHhhh--CCceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcCCCCCCH
Q 039519 85 FDKVRRCLRE--EQVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDESWKNGSL 152 (647)
Q Consensus 85 ~~~i~~~L~~--~~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 152 (647)
+..+.+...+ .+...+.++|.+|+||| ...-..+++++ +.++...+-..... ...+.
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it------~~~l~~~l~~~~~~-----~~~~~ 153 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT------VADIMSAMKDTFSN-----SETSE 153 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE------HHHHHHHHHHHHhh-----ccccH
Confidence 3444444433 23457889999999999 11123445553 34455544433321 11122
Q ss_pred HHHHHHHHHHhccCCeeEEEecCCCc
Q 039519 153 EDKASDIFRILSKKKLLLLLDDIWER 178 (647)
Q Consensus 153 ~~~~~~l~~~l~~~r~LlVlDdv~~~ 178 (647)
. .+.+.+. +.=+||+||+...
T Consensus 154 ~----~~l~~l~-~~dlLvIDDig~~ 174 (244)
T PRK07952 154 E----QLLNDLS-NVDLLVIDEIGVQ 174 (244)
T ss_pred H----HHHHHhc-cCCEEEEeCCCCC
Confidence 2 2333344 3457888999654
No 238
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=86.49 E-value=3.2 Score=39.78 Aligned_cols=33 Identities=12% Similarity=0.062 Sum_probs=23.5
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCccC
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQ 128 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~ 128 (647)
.-.++.|.|.+|+||| ...-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCH
Confidence 4578999999999999 12223677887655544
No 239
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=86.48 E-value=1.2 Score=45.23 Aligned_cols=76 Identities=13% Similarity=0.096 Sum_probs=49.8
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcC---CCCCCHHHHHHHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDES---WKNGSLEDKASDIFRI 162 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~ 162 (647)
.-+++-|+|.+|+||| ...-..++||+..+.++.. .+++++.+.+. .+..+.++....+...
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~l 128 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADSL 128 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHHH
Confidence 3578899999999999 2223568899987777753 34444433211 1334566666666666
Q ss_pred hc-cCCeeEEEecCC
Q 039519 163 LS-KKKLLLLLDDIW 176 (647)
Q Consensus 163 l~-~~r~LlVlDdv~ 176 (647)
++ +.--+||+|-|-
T Consensus 129 i~s~~~~lIVIDSva 143 (325)
T cd00983 129 VRSGAVDLIVVDSVA 143 (325)
T ss_pred HhccCCCEEEEcchH
Confidence 54 356689999985
No 240
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=86.13 E-value=3.6 Score=43.89 Aligned_cols=78 Identities=14% Similarity=0.100 Sum_probs=40.0
Q ss_pred CceEEEEEccCccCCC-----------CCCcceEEEEEEcCccC--HHHHHHHHHHHhCCCCcCC-CCCCHHHHHHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA-----------PNDFDVVIWMVVSKDLQ--LEKIQERIGRRIGFLDESW-KNGSLEDKASDIFR 161 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT-----------~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 161 (647)
...+|.++|.+|+||| +..+ .++-|+.. .+. ..+-++.++.+++...... ...+.........+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~-kV~lV~~D-~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGL-KVGLVAAD-TYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCC-eEEEecCC-CCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 3678999999999999 2222 33334332 222 3444556666665432111 11233333333333
Q ss_pred HhccCCeeEEEecCC
Q 039519 162 ILSKKKLLLLLDDIW 176 (647)
Q Consensus 162 ~l~~~r~LlVlDdv~ 176 (647)
.+.+. -+||+|..-
T Consensus 172 ~~~~~-DvVIIDTAG 185 (437)
T PRK00771 172 KFKKA-DVIIVDTAG 185 (437)
T ss_pred HhhcC-CEEEEECCC
Confidence 33333 567778774
No 241
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=85.94 E-value=1.2 Score=49.14 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=29.9
Q ss_pred CCcccchHHHHHHHHHhhh------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~------~~~~vi~I~G~gGiGKT 111 (647)
..-.|.++-.++|++.|.- -.-.++..||++|+|||
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKT 364 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKT 364 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCch
Confidence 3458999999999998862 24569999999999999
No 242
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=85.80 E-value=1.4 Score=44.83 Aligned_cols=77 Identities=12% Similarity=0.103 Sum_probs=50.2
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcC---CCCCCHHHHHHHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDES---WKNGSLEDKASDIFRI 162 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~ 162 (647)
.-+++-|+|.+|+||| ...-..++||+..+.++.. .+++++.+.+. .+..+.++....+...
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~l 128 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAETL 128 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 4579999999999999 2222467899887766653 34555543221 1334566666666666
Q ss_pred hc-cCCeeEEEecCCC
Q 039519 163 LS-KKKLLLLLDDIWE 177 (647)
Q Consensus 163 l~-~~r~LlVlDdv~~ 177 (647)
++ +.--+||+|-|..
T Consensus 129 i~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 129 VRSGAVDIIVVDSVAA 144 (321)
T ss_pred hhccCCcEEEEcchhh
Confidence 64 4567899999863
No 243
>PRK06921 hypothetical protein; Provisional
Probab=85.77 E-value=0.88 Score=45.16 Aligned_cols=16 Identities=25% Similarity=0.221 Sum_probs=14.1
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
....+.++|..|+|||
T Consensus 116 ~~~~l~l~G~~G~GKT 131 (266)
T PRK06921 116 RKNSIALLGQPGSGKT 131 (266)
T ss_pred CCCeEEEECCCCCcHH
Confidence 4567899999999999
No 244
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=85.63 E-value=7.2 Score=41.67 Aligned_cols=97 Identities=23% Similarity=0.156 Sum_probs=57.0
Q ss_pred CceEEEEEccCccCCC--------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHh----
Q 039519 96 QVGIIGLYGMGGLLGA--------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDESWKNGSLEDKASDIFRIL---- 163 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT--------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l---- 163 (647)
+...+.+.|.+|+||| ...|+.+=-++-.+ .-..++......+++.+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~---------------------miG~sEsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPED---------------------MIGLSESAKCAHIKKIFEDAY 595 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHH---------------------ccCccHHHHHHHHHHHHHHhh
Confidence 4567788999999999 66676432221110 11122333333343333
Q ss_pred ccCCeeEEEecCCCccccccccC---------------CCCCCCCCcEEEEecCchHHhhhcccc
Q 039519 164 SKKKLLLLLDDIWERVDLTKVGV---------------PFPDPENKSRIDFTTRFLEICSAMQAH 213 (647)
Q Consensus 164 ~~~r~LlVlDdv~~~~~~~~l~~---------------~~~~~~~gs~IivTTR~~~v~~~~~~~ 213 (647)
+..=-.||+||+..--+|-.++. ..|..+..--|+-||....+...|+.-
T Consensus 596 kS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~ 660 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGIL 660 (744)
T ss_pred cCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHH
Confidence 44567899999987666544322 223334444577788888998887644
No 245
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.49 E-value=0.043 Score=51.54 Aligned_cols=81 Identities=22% Similarity=0.169 Sum_probs=69.1
Q ss_pred CCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcE
Q 039519 415 PALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQV 494 (647)
Q Consensus 415 ~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~ 494 (647)
......+.||++.| .+..+-..|+.++.|..|+++.|.+..+|.+++.+..++++++..| +....|.+ +++++.++.
T Consensus 39 ~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s-~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKS-QKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCcc-ccccCCcch
Confidence 45567888999999 6777888899999999999999999999999999999999998887 77889987 777777776
Q ss_pred Eecc
Q 039519 495 LRMF 498 (647)
Q Consensus 495 L~l~ 498 (647)
+..-
T Consensus 116 ~e~k 119 (326)
T KOG0473|consen 116 NEQK 119 (326)
T ss_pred hhhc
Confidence 6443
No 246
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=85.23 E-value=1.8 Score=42.65 Aligned_cols=32 Identities=13% Similarity=0.046 Sum_probs=20.8
Q ss_pred cchHHHHHHHHHhhh-CCceEEEEEccCccCCC
Q 039519 80 GLESTFDKVRRCLRE-EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 80 Gr~~~~~~i~~~L~~-~~~~vi~I~G~gGiGKT 111 (647)
++...+.++...... ++..-+.++|.+|+|||
T Consensus 87 ~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKT 119 (254)
T COG1484 87 IDKKALEDLASLVEFFERGENLVLLGPPGVGKT 119 (254)
T ss_pred hhHHHHHHHHHHHHHhccCCcEEEECCCCCcHH
Confidence 344444444443322 35667889999999999
No 247
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=85.19 E-value=6.6 Score=40.04 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhhCCc-eEEEEEccCccCCC
Q 039519 83 STFDKVRRCLREEQV-GIIGLYGMGGLLGA 111 (647)
Q Consensus 83 ~~~~~i~~~L~~~~~-~vi~I~G~gGiGKT 111 (647)
...+.+...+..+++ ..+-++|..|+||+
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~ 40 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKR 40 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHH
Confidence 345666666666654 45889999999998
No 248
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=85.06 E-value=2.2 Score=42.07 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=55.2
Q ss_pred ceEEEEEccCccCCC------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHhccCCeeE
Q 039519 97 VGIIGLYGMGGLLGA------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDESWKNGSLEDKASDIFRILSKKKLLL 170 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~Ll 170 (647)
.+.+.|+|+.|+||| ....+..+-+..++.+....+...+....... ......+....+...+++..-++
T Consensus 94 g~l~~vyg~~g~gKt~a~~~y~~s~p~~~l~~~~p~~~a~~~i~~i~~~~~~~----~~~~~~d~~~~~~~~l~~~~~~i 169 (297)
T COG2842 94 GSLVVVYGYAGLGKTQAAKNYAPSNPNALLIEADPSYTALVLILIICAAAFGA----TDGTINDLTERLMIRLRDTVRLI 169 (297)
T ss_pred CceEEEeccccchhHHHHHhhcccCccceeecCChhhHHHHHHHHHHHHHhcc----cchhHHHHHHHHHHHHccCccee
Confidence 348889999999999 33334444456777777777777666665443 33456667777777888888899
Q ss_pred EEecCCCc
Q 039519 171 LLDDIWER 178 (647)
Q Consensus 171 VlDdv~~~ 178 (647)
+.|..+.-
T Consensus 170 ivDEA~~L 177 (297)
T COG2842 170 IVDEADRL 177 (297)
T ss_pred eeehhhcc
Confidence 99998763
No 249
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=84.69 E-value=2.5 Score=38.81 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=12.2
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
++.++|++|+|||
T Consensus 2 ~~~~~G~~G~GKT 14 (173)
T cd03115 2 VILLVGLQGVGKT 14 (173)
T ss_pred EEEEECCCCCCHH
Confidence 6889999999999
No 250
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=84.48 E-value=0.48 Score=49.13 Aligned_cols=76 Identities=16% Similarity=0.135 Sum_probs=37.0
Q ss_pred CceEEEEEccCccCCC--CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHhccCCeeEEEe
Q 039519 96 QVGIIGLYGMGGLLGA--PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDESWKNGSLEDKASDIFRILSKKKLLLLLD 173 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT--~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlD 173 (647)
..+=+-|||..|.||| -+.|-..+=+.-....-...+..++.+.+.... ...+....+.+.+.++..||.||
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~------~~~~~l~~va~~l~~~~~lLcfD 134 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLR------GQDDPLPQVADELAKESRLLCFD 134 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHh------CCCccHHHHHHHHHhcCCEEEEe
Confidence 3566889999999999 111110000000000111233444444432111 11122334556666777799999
Q ss_pred cCCC
Q 039519 174 DIWE 177 (647)
Q Consensus 174 dv~~ 177 (647)
...=
T Consensus 135 EF~V 138 (362)
T PF03969_consen 135 EFQV 138 (362)
T ss_pred eeec
Confidence 8753
No 251
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.42 E-value=3 Score=42.31 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=25.8
Q ss_pred cchHHHHHHHHHhhh-------------CCceEEEEEccCccCCC
Q 039519 80 GLESTFDKVRRCLRE-------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 80 Gr~~~~~~i~~~L~~-------------~~~~vi~I~G~gGiGKT 111 (647)
|-++.+++|.+.+.- +..+=|-++|++|.|||
T Consensus 155 GL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKT 199 (406)
T COG1222 155 GLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKT 199 (406)
T ss_pred CHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHH
Confidence 788899999887641 34566789999999999
No 252
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=84.24 E-value=2.7 Score=41.91 Aligned_cols=24 Identities=13% Similarity=0.048 Sum_probs=19.2
Q ss_pred HHHHhhhCCceEEEEEccCccCCC
Q 039519 88 VRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 88 i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
..+.+.+.+..+|.|.|.+|+|||
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKT 118 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKT 118 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHH
Confidence 334444568899999999999999
No 253
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.96 E-value=0.19 Score=46.47 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=23.6
Q ss_pred ccCCccEEEEcCCCCCCCC--hhhccccCCceEEeeccc
Q 039519 577 CLHNLNKLYVAGCKHLEDF--QMIIQRSSLSVHNLFINK 613 (647)
Q Consensus 577 ~l~~L~~L~L~~~~~~~~~--~~~~~l~~L~~L~L~~~~ 613 (647)
..++|+.|+|++|+.++.- -++..+++|+.|.|.+.+
T Consensus 149 ~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 149 LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 3566777777777665543 356677777777776644
No 254
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=83.66 E-value=2.9 Score=46.17 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=12.7
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
..+.|+|-.|+|||
T Consensus 315 NpL~LyG~sGsGKT 328 (617)
T PRK14086 315 NPLFIYGESGLGKT 328 (617)
T ss_pred CcEEEECCCCCCHH
Confidence 45899999999999
No 255
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=83.27 E-value=0.58 Score=43.32 Aligned_cols=16 Identities=25% Similarity=0.146 Sum_probs=12.7
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...-+.++|..|+|||
T Consensus 46 ~~~~l~l~G~~G~GKT 61 (178)
T PF01695_consen 46 NGENLILYGPPGTGKT 61 (178)
T ss_dssp C--EEEEEESTTSSHH
T ss_pred cCeEEEEEhhHhHHHH
Confidence 3456889999999999
No 256
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=83.25 E-value=2.5 Score=45.02 Aligned_cols=81 Identities=11% Similarity=0.211 Sum_probs=45.9
Q ss_pred CcccchH---HHHHHHHHhhhC--------C-ceEEEEEccCccCCC------CCCcceEEEEEEcCccCHHHHHHHHHH
Q 039519 77 PTVGLES---TFDKVRRCLREE--------Q-VGIIGLYGMGGLLGA------PNDFDVVIWMVVSKDLQLEKIQERIGR 138 (647)
Q Consensus 77 ~~vGr~~---~~~~i~~~L~~~--------~-~~vi~I~G~gGiGKT------~~~F~~~~wv~~s~~~~~~~~~~~i~~ 138 (647)
.+-|-|+ ++++|++.|.+. + .+=|-++|++|.||| .+.-..=+|...+..|
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEF----------- 373 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEF----------- 373 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccch-----------
Confidence 3457765 456667777651 1 345778999999999 1111111222222222
Q ss_pred HhCCCCcCCCCCCHHHHHHHHHHHhc----cCCeeEEEecCCC
Q 039519 139 RIGFLDESWKNGSLEDKASDIFRILS----KKKLLLLLDDIWE 177 (647)
Q Consensus 139 ~l~~~~~~~~~~~~~~~~~~l~~~l~----~~r~LlVlDdv~~ 177 (647)
+..-....++.+++.+. .-++.|.+|.++.
T Consensus 374 ---------dEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 374 ---------DEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred ---------hhhhhcccHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 22233334555555553 4579999999974
No 257
>PRK06696 uridine kinase; Validated
Probab=83.18 E-value=1.1 Score=43.36 Aligned_cols=32 Identities=3% Similarity=-0.001 Sum_probs=26.1
Q ss_pred cchHHHHHHHHHhhh---CCceEEEEEccCccCCC
Q 039519 80 GLESTFDKVRRCLRE---EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 80 Gr~~~~~~i~~~L~~---~~~~vi~I~G~gGiGKT 111 (647)
.|.+.+++|.+.+.. ++..+|+|.|.+|+|||
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKS 36 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKT 36 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHH
Confidence 366777888877753 56789999999999999
No 258
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=83.14 E-value=4.7 Score=40.42 Aligned_cols=16 Identities=38% Similarity=0.482 Sum_probs=14.4
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
+.++|+|+|.+|+|||
T Consensus 193 ~~~vi~~vGptGvGKT 208 (282)
T TIGR03499 193 QGGVIALVGPTGVGKT 208 (282)
T ss_pred CCeEEEEECCCCCCHH
Confidence 3569999999999999
No 259
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=83.14 E-value=4.2 Score=40.61 Aligned_cols=69 Identities=12% Similarity=0.102 Sum_probs=40.0
Q ss_pred ceEEEEEccCccCCC--------------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHH
Q 039519 97 VGIIGLYGMGGLLGA--------------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDESWKNGSLEDKASDIFRI 162 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT--------------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 162 (647)
-++|-++|++|.||| .+.|....-|.++. ..+.....+.- ..-.....++|.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsES--------gKlV~kmF~kI~EL 244 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSES--------GKLVAKMFQKIQEL 244 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhhh--------hhHHHHHHHHHHHH
Confidence 578999999999999 34444444444422 23333322221 12345566677777
Q ss_pred hccCCee--EEEecCCC
Q 039519 163 LSKKKLL--LLLDDIWE 177 (647)
Q Consensus 163 l~~~r~L--lVlDdv~~ 177 (647)
++.+..| +.+|.|.+
T Consensus 245 v~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 245 VEDRGNLVFVLIDEVES 261 (423)
T ss_pred HhCCCcEEEEEeHHHHH
Confidence 7766544 45588853
No 260
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=83.07 E-value=0.5 Score=40.44 Aligned_cols=13 Identities=23% Similarity=0.161 Sum_probs=12.4
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
||+|.|++|+|||
T Consensus 1 vI~I~G~~gsGKS 13 (121)
T PF13207_consen 1 VIIISGPPGSGKS 13 (121)
T ss_dssp EEEEEESTTSSHH
T ss_pred CEEEECCCCCCHH
Confidence 6899999999999
No 261
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=83.02 E-value=3 Score=48.15 Aligned_cols=34 Identities=26% Similarity=0.271 Sum_probs=26.8
Q ss_pred cccchHHHHHHHHHhhh-------------CCceEEEEEccCccCCC
Q 039519 78 TVGLESTFDKVRRCLRE-------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 78 ~vGr~~~~~~i~~~L~~-------------~~~~vi~I~G~gGiGKT 111 (647)
+.|.+..++++.+.+.. ...+-|.++|.+|+|||
T Consensus 180 i~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT 226 (733)
T TIGR01243 180 IGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKT 226 (733)
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChH
Confidence 57999999998887641 12356889999999999
No 262
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=82.99 E-value=4.4 Score=36.26 Aligned_cols=30 Identities=13% Similarity=0.307 Sum_probs=21.1
Q ss_pred EEEEEccCccCCC----------CCCcceEEEEEEcCccC
Q 039519 99 IIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQ 128 (647)
Q Consensus 99 vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~ 128 (647)
++.|+|.+|+||| ...-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 4689999999999 22234677877765543
No 263
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.98 E-value=0.31 Score=45.06 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=22.9
Q ss_pred CccCcEEeecccccCCcCchhhhcCCCCCcEEecccc
Q 039519 464 LVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDC 500 (647)
Q Consensus 464 l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 500 (647)
.++|+.|++++|+.+++-.-..+.++++|+.|.+.+.
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 4677888888876555443333556666666666554
No 264
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=82.95 E-value=1.2 Score=48.42 Aligned_cols=36 Identities=28% Similarity=0.348 Sum_probs=31.0
Q ss_pred CCcccchHHHHHHHHHhh------hCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLR------EEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~------~~~~~vi~I~G~gGiGKT 111 (647)
..++|.++.+++|++.|. +..-+++.++|++|+|||
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKS 117 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKS 117 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCch
Confidence 346899999999999884 245679999999999999
No 265
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=82.46 E-value=2.3 Score=44.98 Aligned_cols=82 Identities=20% Similarity=0.190 Sum_probs=47.8
Q ss_pred CceEEEEEccCccCCC--------CCCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCCc----CCCCCCHHH------HH
Q 039519 96 QVGIIGLYGMGGLLGA--------PNDFDVVIWMVVSKDL-QLEKIQERIGRRIGFLDE----SWKNGSLED------KA 156 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT--------~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~------~~ 156 (647)
.-..++|+|..|+||| ....+.++.+-+++.. .+.++.+.++..-+.... ...+..... .+
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A 240 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTTADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETA 240 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCCCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHH
Confidence 4467999999999999 2233566666676654 456666666444221100 001111111 12
Q ss_pred HHHHHHh--ccCCeeEEEecCCC
Q 039519 157 SDIFRIL--SKKKLLLLLDDIWE 177 (647)
Q Consensus 157 ~~l~~~l--~~~r~LlVlDdv~~ 177 (647)
-.+.+++ +++++|+++||+-.
T Consensus 241 ~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 241 TTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHcCCCEEEEEcChHH
Confidence 2344555 58999999999965
No 266
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=82.45 E-value=5.2 Score=38.96 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=27.1
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQERI 136 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~i 136 (647)
.-+++.|.|.+|+||| -..-..++||+... +..++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC--CHHHHHHHH
Confidence 4579999999999999 12234678888765 444555543
No 267
>PRK10867 signal recognition particle protein; Provisional
Probab=82.26 E-value=4.3 Score=43.22 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=14.5
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+|.++|.+|+|||
T Consensus 99 ~p~vI~~vG~~GsGKT 114 (433)
T PRK10867 99 PPTVIMMVGLQGAGKT 114 (433)
T ss_pred CCEEEEEECCCCCcHH
Confidence 3679999999999999
No 268
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=82.17 E-value=4.7 Score=42.86 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=14.0
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..++.++|.+|+|||
T Consensus 99 p~vi~~vG~~GsGKT 113 (428)
T TIGR00959 99 PTVILMVGLQGSGKT 113 (428)
T ss_pred CEEEEEECCCCCcHH
Confidence 578999999999999
No 269
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=82.16 E-value=5.2 Score=40.78 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=32.6
Q ss_pred CceEEEEEccCccCCC----------CC------CcceEEEEEEcCccCHHHHHHHHHHHhC
Q 039519 96 QVGIIGLYGMGGLLGA----------PN------DFDVVIWMVVSKDLQLEKIQERIGRRIG 141 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~------~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 141 (647)
...++-|+|.+|+||| .. .=..++||+...+|+..++.+. +..++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~-~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQM-AEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHH-HHHcC
Confidence 3578899999999999 10 0137899999998888776544 44444
No 270
>PTZ00035 Rad51 protein; Provisional
Probab=81.94 E-value=11 Score=38.86 Aligned_cols=80 Identities=18% Similarity=0.176 Sum_probs=45.9
Q ss_pred CceEEEEEccCccCCC---------CC-------CcceEEEEEEcCccCHHHHHHHHHHHhCCCCcC-------CCCCCH
Q 039519 96 QVGIIGLYGMGGLLGA---------PN-------DFDVVIWMVVSKDLQLEKIQERIGRRIGFLDES-------WKNGSL 152 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT---------~~-------~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 152 (647)
.-.++.|+|.+|+||| .. .=..++||+....|+..++. .+++.++..... ....+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~-~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIV-QIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHH-HHHHHhCCChHhHhhceEEEccCCH
Confidence 4578999999999999 11 12356799988878877743 335555443210 012233
Q ss_pred HHHHHHH---HHHhc-cCCeeEEEecCC
Q 039519 153 EDKASDI---FRILS-KKKLLLLLDDIW 176 (647)
Q Consensus 153 ~~~~~~l---~~~l~-~~r~LlVlDdv~ 176 (647)
++....+ .+.+. .+--|||+|-+.
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSit 223 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSAT 223 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 3333333 22332 344578888874
No 271
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=81.47 E-value=8 Score=39.29 Aligned_cols=77 Identities=12% Similarity=0.118 Sum_probs=47.4
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcCC---CCCCHHHHHHHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDESW---KNGSLEDKASDIFRI 162 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~ 162 (647)
.-+++-|+|..|+||| ...-..++||+..+.++.. .+..++.+.+.. ++...++..+.+.+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e~l 126 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAEQL 126 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHHHH
Confidence 3579999999999999 2334578999998877653 344445443321 345567777777777
Q ss_pred hcc-CCeeEEEecCCC
Q 039519 163 LSK-KKLLLLLDDIWE 177 (647)
Q Consensus 163 l~~-~r~LlVlDdv~~ 177 (647)
++. .--++|+|-|-.
T Consensus 127 irsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 127 IRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHTTSESEEEEE-CTT
T ss_pred hhcccccEEEEecCcc
Confidence 754 446888898854
No 272
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=81.31 E-value=5.6 Score=39.51 Aligned_cols=116 Identities=11% Similarity=-0.067 Sum_probs=60.4
Q ss_pred HHHHHHhhh-CCceEEEEEccCccCCC---------CCCcceEEEEE---EcCccCHHHHHHHHHHHhCC-CCc----CC
Q 039519 86 DKVRRCLRE-EQVGIIGLYGMGGLLGA---------PNDFDVVIWMV---VSKDLQLEKIQERIGRRIGF-LDE----SW 147 (647)
Q Consensus 86 ~~i~~~L~~-~~~~vi~I~G~gGiGKT---------~~~F~~~~wv~---~s~~~~~~~~~~~i~~~l~~-~~~----~~ 147 (647)
+.+...+.+ ....-++|+|..|.||| .....+.+++. +...... .++...... ... ..
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~----~ei~~~~~~~~q~~~~~r~ 174 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDER----SEIAGCVNGVPQHDVGIRT 174 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhH----HHHHHHhcccccccccccc
Confidence 344444443 44568999999999999 22223445542 2211111 223222211 110 00
Q ss_pred CCCCHHHHHHHHHHHhc-cCCeeEEEecCCCccccccccCCCCCCCCCcEEEEecCchHHhh
Q 039519 148 KNGSLEDKASDIFRILS-KKKLLLLLDDIWERVDLTKVGVPFPDPENKSRIDFTTRFLEICS 208 (647)
Q Consensus 148 ~~~~~~~~~~~l~~~l~-~~r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~ 208 (647)
+..+.......+...+. ..+=++++|.+...+.+..+...+. .|..||+||-...+..
T Consensus 175 ~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 175 DVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred cccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 11111111222333333 5788999999988776666544432 4778999998766643
No 273
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=80.93 E-value=5.9 Score=40.67 Aligned_cols=84 Identities=7% Similarity=0.103 Sum_probs=39.8
Q ss_pred CCeeEEEecCCCc--cccccccCCCCCCCCCcEEEEecCch-HHhhhccc-ceeEecc-----c---cccC--CCChHHH
Q 039519 166 KKLLLLLDDIWER--VDLTKVGVPFPDPENKSRIDFTTRFL-EICSAMQA-HEFLKVE-----D---VLKN--HPNIPEL 231 (647)
Q Consensus 166 ~r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~-~v~~~~~~-~~~~~~~-----~---~~~~--~~~~~~~ 231 (647)
++-++|+|+++.. .....+...+.....++.+|+||.+. .+...+.. -..+.+. + .... ....++.
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 185 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPESDERE 185 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccCChHH
Confidence 3444567999864 33344433343333466666666654 33322111 1122220 0 0000 0122344
Q ss_pred HHHHHHHhcCCchhHHHH
Q 039519 232 ARSVAQECAGLPLALITI 249 (647)
Q Consensus 232 ~~~i~~~c~glPLai~~~ 249 (647)
+..++..++|.|..+..+
T Consensus 186 ~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 186 RIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 566788888988655443
No 274
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=80.84 E-value=6.2 Score=37.02 Aligned_cols=79 Identities=11% Similarity=0.149 Sum_probs=51.3
Q ss_pred ceEEEEEccCccCCC------------CCCcc----eEEEEEEcCccCHHHHHHHHHHHhCCC---CcC-CCCCCHHHHH
Q 039519 97 VGIIGLYGMGGLLGA------------PNDFD----VVIWMVVSKDLQLEKIQERIGRRIGFL---DES-WKNGSLEDKA 156 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT------------~~~F~----~~~wv~~s~~~~~~~~~~~i~~~l~~~---~~~-~~~~~~~~~~ 156 (647)
..+|-|.|+||.||| -..|. .+.|++.+..||...+.+.+-..+... +.. ..-.+++...
T Consensus 38 G~~vEi~Gp~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hrL~q~~~~e~~~~~c~te~~~e 117 (293)
T KOG2859|consen 38 GTLVEISGPGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHRLKQYSVGEVIAAKCPTEEQLE 117 (293)
T ss_pred CcEEEEeCCCCccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHHHHHhhhhhhhhhcCCcHhHHH
Confidence 358999999999999 44453 578889999999888877776665432 100 0112344555
Q ss_pred HHHHHHhccCCeeEEEecC
Q 039519 157 SDIFRILSKKKLLLLLDDI 175 (647)
Q Consensus 157 ~~l~~~l~~~r~LlVlDdv 175 (647)
+...+.++.-+++=.+|+.
T Consensus 118 Ei~~~Cm~Rf~~v~C~~s~ 136 (293)
T KOG2859|consen 118 EIAGECMSRFRFVNCFASD 136 (293)
T ss_pred HHHHHHHhhEEEEEeeccH
Confidence 6666666555555555543
No 275
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=80.74 E-value=7.3 Score=37.14 Aligned_cols=81 Identities=16% Similarity=0.275 Sum_probs=49.6
Q ss_pred HHHHHHHhccCCeeEEEecCCCccccccccC------CCCCCCCCcEEEEecCchHHhhhcccceeEeccc-cccCCCCh
Q 039519 156 ASDIFRILSKKKLLLLLDDIWERVDLTKVGV------PFPDPENKSRIDFTTRFLEICSAMQAHEFLKVED-VLKNHPNI 228 (647)
Q Consensus 156 ~~~l~~~l~~~r~LlVlDdv~~~~~~~~l~~------~~~~~~~gs~IivTTR~~~v~~~~~~~~~~~~~~-~~~~~~~~ 228 (647)
...+.+.+--++-+.|||..++--+.+++.. .+. ..|+-++|.|..+.++....++..+-+-+ .+-. ..-
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~-sG~ 228 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVK-SGD 228 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEe-cCC
Confidence 3345555556778999999998766555421 122 23666888888899998888777666622 2111 122
Q ss_pred HHHHHHHHHHh
Q 039519 229 PELARSVAQEC 239 (647)
Q Consensus 229 ~~~~~~i~~~c 239 (647)
.+++.++-++|
T Consensus 229 ~el~~~le~~g 239 (251)
T COG0396 229 PELAEELEEKG 239 (251)
T ss_pred HHHHHHHHHhc
Confidence 26666665544
No 276
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=80.64 E-value=1 Score=26.66 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=13.4
Q ss_pred cCCCeeeecCCCCCcccc
Q 039519 442 VSLEHLDLSSTAITHLPI 459 (647)
Q Consensus 442 ~~L~~L~L~~~~l~~lp~ 459 (647)
.+|++|++++|++++||+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357778888888887775
No 277
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=80.59 E-value=3.7 Score=40.60 Aligned_cols=81 Identities=15% Similarity=0.226 Sum_probs=47.4
Q ss_pred CceEEEEEccCccCCC----------CCCcc-eEEEEEEcCcc-CHHHHHHHHHHHhCCCC-----cCCCCCCHH-----
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFD-VVIWMVVSKDL-QLEKIQERIGRRIGFLD-----ESWKNGSLE----- 153 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~----- 153 (647)
.-.-++|+|-+|+||| ..+|+ .++++-+++.. .+.++.+.+...=.... .. -+....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t-~d~~~~~r~~~ 146 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQ-MNEPPGARARV 146 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEEC-CCCCHHHHHHH
Confidence 3457899999999999 33454 45556676654 46667776654311100 00 111111
Q ss_pred -HHHHHHHHHh---ccCCeeEEEecCCC
Q 039519 154 -DKASDIFRIL---SKKKLLLLLDDIWE 177 (647)
Q Consensus 154 -~~~~~l~~~l---~~~r~LlVlDdv~~ 177 (647)
...-.+.+++ +++.+|+++||+-.
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1122455555 38999999999854
No 278
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=80.34 E-value=5.1 Score=41.20 Aligned_cols=35 Identities=6% Similarity=0.027 Sum_probs=26.4
Q ss_pred Cccc-chHHHHHHHHHhhhCCc-eEEEEEccCccCCC
Q 039519 77 PTVG-LESTFDKVRRCLREEQV-GIIGLYGMGGLLGA 111 (647)
Q Consensus 77 ~~vG-r~~~~~~i~~~L~~~~~-~vi~I~G~gGiGKT 111 (647)
.++| -+..++.+...+..+++ ...-++|..|+|||
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~ 42 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKK 42 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHH
Confidence 3566 66677778887776654 45689999999998
No 279
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=80.30 E-value=2.7 Score=39.66 Aligned_cols=118 Identities=14% Similarity=0.160 Sum_probs=52.5
Q ss_pred chHHHHHHHHHhhhCCceEEEEEccCccCCC------------CCCcceEEEEEE--c--Cc--cCHHHH-------HHH
Q 039519 81 LESTFDKVRRCLREEQVGIIGLYGMGGLLGA------------PNDFDVVIWMVV--S--KD--LQLEKI-------QER 135 (647)
Q Consensus 81 r~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT------------~~~F~~~~wv~~--s--~~--~~~~~~-------~~~ 135 (647)
+..+-....+.|. ...+|.+.|.+|.||| .+.|+.++++.- . +. |-+.++ ..-
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p 82 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRP 82 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHH
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHH
Confidence 4455556666666 4468999999999999 788888887752 1 11 111111 112
Q ss_pred HHHHhCCCCcCCCCCCHHHHHHH------HHHHhccC---CeeEEEecCCCc--cccccccCCCCCCCCCcEEEEecCch
Q 039519 136 IGRRIGFLDESWKNGSLEDKASD------IFRILSKK---KLLLLLDDIWER--VDLTKVGVPFPDPENKSRIDFTTRFL 204 (647)
Q Consensus 136 i~~~l~~~~~~~~~~~~~~~~~~------l~~~l~~~---r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~ 204 (647)
+...+..- ......+..... --.+++|+ ...||+|++.+. .++..+ +-..+.||+||++--..
T Consensus 83 ~~d~l~~~---~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii~~GD~~ 156 (205)
T PF02562_consen 83 IYDALEEL---FGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKIIITGDPS 156 (205)
T ss_dssp HHHHHTTT---S-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEEEEE---
T ss_pred HHHHHHHH---hChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEEEecCce
Confidence 22222110 011112111100 00123343 568999999764 445444 33457899999987665
Q ss_pred HH
Q 039519 205 EI 206 (647)
Q Consensus 205 ~v 206 (647)
++
T Consensus 157 Q~ 158 (205)
T PF02562_consen 157 QI 158 (205)
T ss_dssp --
T ss_pred ee
Confidence 55
No 280
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=80.24 E-value=14 Score=38.85 Aligned_cols=60 Identities=20% Similarity=0.164 Sum_probs=31.8
Q ss_pred EEEEEccCccCCCCCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHhc--cCCeeEEEecCC
Q 039519 99 IIGLYGMGGLLGAPNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDESWKNGSLEDKASDIFRILS--KKKLLLLLDDIW 176 (647)
Q Consensus 99 vi~I~G~gGiGKT~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~ 176 (647)
=--++|++|.||| .+...|+..+..+-......+... -..+++.|. ..|-.||+.|++
T Consensus 237 GYLLYGPPGTGKS-------------------S~IaAmAn~L~ydIydLeLt~v~~-n~dLr~LL~~t~~kSIivIEDID 296 (457)
T KOG0743|consen 237 GYLLYGPPGTGKS-------------------SFIAAMANYLNYDIYDLELTEVKL-DSDLRHLLLATPNKSILLIEDID 296 (457)
T ss_pred cceeeCCCCCCHH-------------------HHHHHHHhhcCCceEEeeeccccC-cHHHHHHHHhCCCCcEEEEeecc
Confidence 3568999999999 344445555443221111111111 111444442 357788889987
Q ss_pred Cc
Q 039519 177 ER 178 (647)
Q Consensus 177 ~~ 178 (647)
..
T Consensus 297 cs 298 (457)
T KOG0743|consen 297 CS 298 (457)
T ss_pred cc
Confidence 43
No 281
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=79.89 E-value=15 Score=35.71 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=23.2
Q ss_pred cchHHHHHHHHHhhh-------------CCceEEEEEccCccCCC
Q 039519 80 GLESTFDKVRRCLRE-------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 80 Gr~~~~~~i~~~L~~-------------~~~~vi~I~G~gGiGKT 111 (647)
|=.+.++++.+...- +..+=|..+|.+|.|||
T Consensus 181 gckeqieklrevve~pll~perfv~lgidppkgvllygppgtgkt 225 (435)
T KOG0729|consen 181 GCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKT 225 (435)
T ss_pred chHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchh
Confidence 556667777665431 34566888999999999
No 282
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=79.68 E-value=1.2 Score=42.19 Aligned_cols=50 Identities=8% Similarity=0.006 Sum_probs=31.9
Q ss_pred HHHHHHHHHhccCCeeEEEecCCCccccccccCCCCCCCCCcEEEEecCchHH
Q 039519 154 DKASDIFRILSKKKLLLLLDDIWERVDLTKVGVPFPDPENKSRIDFTTRFLEI 206 (647)
Q Consensus 154 ~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v 206 (647)
...+.++..++...=.+++|.+.+.+.++..... ...|..++.|+-..++
T Consensus 62 ~~~~~i~~aLr~~pd~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 62 SFENALKAALRQDPDVILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSA 111 (198)
T ss_pred CHHHHHHHHhcCCcCEEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcH
Confidence 3455677777777789999999887655443222 1245567777765444
No 283
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=79.60 E-value=1.1 Score=40.23 Aligned_cols=15 Identities=13% Similarity=0.242 Sum_probs=14.0
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
.++|.|+|.+|+|||
T Consensus 4 ~kvvvitGVpGvGKT 18 (189)
T COG2019 4 RKVVVITGVPGVGKT 18 (189)
T ss_pred ceEEEEEcCCCCChH
Confidence 579999999999999
No 284
>PRK08939 primosomal protein DnaI; Reviewed
Probab=79.47 E-value=8.2 Score=39.17 Aligned_cols=79 Identities=22% Similarity=0.222 Sum_probs=42.5
Q ss_pred cchHHHHHHHHHhhh----CCceEEEEEccCccCCC-----------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCC
Q 039519 80 GLESTFDKVRRCLRE----EQVGIIGLYGMGGLLGA-----------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLD 144 (647)
Q Consensus 80 Gr~~~~~~i~~~L~~----~~~~vi~I~G~gGiGKT-----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 144 (647)
+|...+....+++.. ...+-+.++|..|+||| ...+ .+.+++++ .+...+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~-~v~~~~~~------~l~~~lk~~~~~-- 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGV-SSTLLHFP------EFIRELKNSISD-- 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CEEEEEHH------HHHHHHHHHHhc--
Confidence 344444444445542 13457889999999999 2222 34455443 455555544321
Q ss_pred cCCCCCCHHHHHHHHHHHhccCCeeEEEecCCC
Q 039519 145 ESWKNGSLEDKASDIFRILSKKKLLLLLDDIWE 177 (647)
Q Consensus 145 ~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~ 177 (647)
.+..+ .+. .+ .+-=||||||+..
T Consensus 206 -----~~~~~---~l~-~l-~~~dlLiIDDiG~ 228 (306)
T PRK08939 206 -----GSVKE---KID-AV-KEAPVLMLDDIGA 228 (306)
T ss_pred -----CcHHH---HHH-Hh-cCCCEEEEecCCC
Confidence 12222 222 22 3456889999964
No 285
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=79.39 E-value=9.2 Score=38.04 Aligned_cols=81 Identities=14% Similarity=0.051 Sum_probs=50.1
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHh--
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDESWKNGSLEDKASDIFRIL-- 163 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-- 163 (647)
.-+++=|+|..|.||| ...-..++||+.-+.+++..+..--...+..-. -.+..+.++....+....
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~-v~~~~~~e~q~~i~~~~~~~ 137 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLL-VSQPDTGEQQLEIAEKLARS 137 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHHHHHhhhccee-EecCCCHHHHHHHHHHHHHh
Confidence 4578999999999999 333348899999999998776554444221100 013334444444333333
Q ss_pred -ccCCeeEEEecCCC
Q 039519 164 -SKKKLLLLLDDIWE 177 (647)
Q Consensus 164 -~~~r~LlVlDdv~~ 177 (647)
..+--|+|+|.|-.
T Consensus 138 ~~~~i~LvVVDSvaa 152 (279)
T COG0468 138 GAEKIDLLVVDSVAA 152 (279)
T ss_pred ccCCCCEEEEecCcc
Confidence 33356888898843
No 286
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=79.20 E-value=3.4 Score=45.66 Aligned_cols=62 Identities=26% Similarity=0.129 Sum_probs=36.6
Q ss_pred ceEEEEEccCccCCC-----------CCCcceEEEEEEcCc--cCHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHh
Q 039519 97 VGIIGLYGMGGLLGA-----------PNDFDVVIWMVVSKD--LQLEKIQERIGRRIGFLDESWKNGSLEDKASDIFRIL 163 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT-----------~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 163 (647)
..-|-|.|..|+||| ++..-.+..++.+.- ..++.+++.+ ...+.+.+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l-------------------~~vfse~~ 491 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFL-------------------NNVFSEAL 491 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHH-------------------HHHHHHHH
Confidence 346789999999999 333334444444432 1223333332 22334455
Q ss_pred ccCCeeEEEecCCC
Q 039519 164 SKKKLLLLLDDIWE 177 (647)
Q Consensus 164 ~~~r~LlVlDdv~~ 177 (647)
.-.+-+|||||++-
T Consensus 492 ~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDC 505 (952)
T ss_pred hhCCcEEEEcchhh
Confidence 56789999999963
No 287
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=79.11 E-value=2.9 Score=44.53 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=25.5
Q ss_pred ccchHHHHHHHHHhhh-------------CCceEEEEEccCccCCC
Q 039519 79 VGLESTFDKVRRCLRE-------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 79 vGr~~~~~~i~~~L~~-------------~~~~vi~I~G~gGiGKT 111 (647)
.|.+..+++|.+.+.- ...+-|.++|.+|+|||
T Consensus 186 gGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT 231 (438)
T PTZ00361 186 GGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKT 231 (438)
T ss_pred cCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHH
Confidence 5888888888887641 13456779999999999
No 288
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=79.10 E-value=2.3 Score=44.54 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=20.2
Q ss_pred HHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 85 FDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 85 ~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
++.+.+.+.......+-|.|.||.|||
T Consensus 10 ~~~v~~~~~~~~~~~~fv~G~~GtGKs 36 (364)
T PF05970_consen 10 FDTVIEAIENEEGLNFFVTGPAGTGKS 36 (364)
T ss_pred HHHHHHHHHccCCcEEEEEcCCCCChh
Confidence 344555555556678899999999999
No 289
>PRK14974 cell division protein FtsY; Provisional
Probab=79.05 E-value=10 Score=39.00 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=14.6
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
+..+|+++|++|+|||
T Consensus 139 ~~~vi~~~G~~GvGKT 154 (336)
T PRK14974 139 KPVVIVFVGVNGTGKT 154 (336)
T ss_pred CCeEEEEEcCCCCCHH
Confidence 3679999999999999
No 290
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=78.87 E-value=7.1 Score=40.66 Aligned_cols=77 Identities=18% Similarity=0.180 Sum_probs=41.7
Q ss_pred CceEEEEEccCccCCC----------CCCc--ceEEEEEEcCcc--CHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDF--DVVIWMVVSKDL--QLEKIQERIGRRIGFLDESWKNGSLEDKASDIFR 161 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F--~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 161 (647)
...+++++|..|+||| ...+ ..+..++ .+.+ ...+-++...+.++.... ...+..+....+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~--~~~~~~~l~~~l~- 211 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT-TDSYRIGGHEQLRIFGKILGVPVH--AVKDGGDLQLALA- 211 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe-cccccccHHHHHHHHHHHcCCceE--ecCCcccHHHHHH-
Confidence 3569999999999999 1223 2455554 3333 334455555666665432 1122223333333
Q ss_pred HhccCCeeEEEecCCC
Q 039519 162 ILSKKKLLLLLDDIWE 177 (647)
Q Consensus 162 ~l~~~r~LlVlDdv~~ 177 (647)
.+.++ -+|++|..-.
T Consensus 212 ~l~~~-DlVLIDTaG~ 226 (374)
T PRK14722 212 ELRNK-HMVLIDTIGM 226 (374)
T ss_pred HhcCC-CEEEEcCCCC
Confidence 33444 5566898853
No 291
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=78.82 E-value=5.5 Score=41.76 Aligned_cols=62 Identities=13% Similarity=0.158 Sum_probs=44.8
Q ss_pred chHHHHHHHHHhhhCCceEEEEEccCccCCC-------CCCcceEEEEEEcCc---cCHHHHHHHHHHHhCC
Q 039519 81 LESTFDKVRRCLREEQVGIIGLYGMGGLLGA-------PNDFDVVIWMVVSKD---LQLEKIQERIGRRIGF 142 (647)
Q Consensus 81 r~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT-------~~~F~~~~wv~~s~~---~~~~~~~~~i~~~l~~ 142 (647)
|.+..++|..+|.+..-..|.|.|+-|+||+ -...+.++.|++.+- .+-..+...++.++|.
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRKNVLVIDCDQIVKARGDAAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCCCEEEEEChHhhhccChHHHHHHHHHhcCC
Confidence 5678899999999877789999999999999 233444777765332 3345566666666653
No 292
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=78.76 E-value=8.8 Score=36.82 Aligned_cols=94 Identities=14% Similarity=0.151 Sum_probs=51.5
Q ss_pred CCcccchHHHHHHHHHh----hhCCceEEEEEccCccCCCCCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcC---CC
Q 039519 76 EPTVGLESTFDKVRRCL----REEQVGIIGLYGMGGLLGAPNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDES---WK 148 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L----~~~~~~vi~I~G~gGiGKT~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~ 148 (647)
..++|.|...+.+.+-. ..-...-|-+||--|.||+ ++.+.++..+....-. +.
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKS-------------------SLVKA~~~e~~~~glrLVEV~ 120 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKS-------------------SLVKALLNEYADEGLRLVEVD 120 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChH-------------------HHHHHHHHHHHhcCCeEEEEc
Confidence 44689888777776533 2334456779999999998 2333333333322111 11
Q ss_pred CCCHHHHHHHHHHHhc--cCCeeEEEecCCCc---cccccccCCCC
Q 039519 149 NGSLEDKASDIFRILS--KKKLLLLLDDIWER---VDLTKVGVPFP 189 (647)
Q Consensus 149 ~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~---~~~~~l~~~~~ 189 (647)
..+...+ ..|-+.|+ ..||.|..||+.=+ +.+..++..+.
T Consensus 121 k~dl~~L-p~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~Le 165 (287)
T COG2607 121 KEDLATL-PDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALE 165 (287)
T ss_pred HHHHhhH-HHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhc
Confidence 1222222 23444443 57899999999743 23444444443
No 293
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=78.64 E-value=3.3 Score=39.58 Aligned_cols=81 Identities=19% Similarity=0.302 Sum_probs=46.1
Q ss_pred ceEEEEEccCccCCC--------CCCcceEEEEEEcCc-cCHHHHHHHHHHHhCCCCc----CCCCCCHHHH------HH
Q 039519 97 VGIIGLYGMGGLLGA--------PNDFDVVIWMVVSKD-LQLEKIQERIGRRIGFLDE----SWKNGSLEDK------AS 157 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT--------~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~------~~ 157 (647)
-.-++|+|.+|+||| ...-+..+++.+++. ..+.++.+.+...-..+.. ...+...... .-
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~a~ 94 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQDADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYTAL 94 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCTTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhcccccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhccch
Confidence 357899999999999 223345578888765 4567777776443111000 0011111111 11
Q ss_pred HHHHHh--ccCCeeEEEecCCC
Q 039519 158 DIFRIL--SKKKLLLLLDDIWE 177 (647)
Q Consensus 158 ~l~~~l--~~~r~LlVlDdv~~ 177 (647)
.+.+++ +++.+|+++||+-.
T Consensus 95 t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 95 TIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHTTSEEEEEEETHHH
T ss_pred hhhHHHhhcCCceeehhhhhHH
Confidence 223333 58999999999843
No 294
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=78.59 E-value=3.8 Score=37.55 Aligned_cols=73 Identities=15% Similarity=0.101 Sum_probs=43.1
Q ss_pred EEEEccCccCCC-------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHhcc--CCeeE
Q 039519 100 IGLYGMGGLLGA-------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDESWKNGSLEDKASDIFRILSK--KKLLL 170 (647)
Q Consensus 100 i~I~G~gGiGKT-------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~--~r~Ll 170 (647)
+-|.|.+|+||| .......+++.-++.++. ++.+.|.++-..... .....+....+.+.+.. +.-.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~---~w~t~E~~~~l~~~l~~~~~~~~V 77 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDD-EMAERIARHRKRRPA---HWRTIETPRDLVSALKELDPGDVV 77 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCH-HHHHHHHHHHHhCCC---CceEeecHHHHHHHHHhcCCCCEE
Confidence 578999999999 222346777777777765 355555554333332 22233334445555532 23378
Q ss_pred EEecCC
Q 039519 171 LLDDIW 176 (647)
Q Consensus 171 VlDdv~ 176 (647)
++|.+.
T Consensus 78 LIDclt 83 (169)
T cd00544 78 LIDCLT 83 (169)
T ss_pred EEEcHh
Confidence 899984
No 295
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=78.40 E-value=4 Score=46.50 Aligned_cols=76 Identities=12% Similarity=0.143 Sum_probs=52.6
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcC---CCCCCHHHHHHHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDES---WKNGSLEDKASDIFRI 162 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~ 162 (647)
.-+++-|.|.+|+||| ...=..++||+..+.++.. .+++++.+.+. ......++....+.+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~~l 133 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIADML 133 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHHHH
Confidence 4678899999999999 1222467999988877743 66667664332 1344556677777776
Q ss_pred hcc-CCeeEEEecCC
Q 039519 163 LSK-KKLLLLLDDIW 176 (647)
Q Consensus 163 l~~-~r~LlVlDdv~ 176 (647)
++. +--|||+|-+.
T Consensus 134 v~~~~~~LVVIDSI~ 148 (790)
T PRK09519 134 IRSGALDIVVIDSVA 148 (790)
T ss_pred hhcCCCeEEEEcchh
Confidence 654 56689999986
No 296
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=78.30 E-value=3.2 Score=38.31 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhccCCeeEEEecC----CCccccccccCCCCCCCCCcEEEEecCchHHhhhc
Q 039519 152 LEDKASDIFRILSKKKLLLLLDDI----WERVDLTKVGVPFPDPENKSRIDFTTRFLEICSAM 210 (647)
Q Consensus 152 ~~~~~~~l~~~l~~~r~LlVlDdv----~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~ 210 (647)
++++. .|.+.+-+++-+++-|.- +..-.|+-+...-.-...|+.|+++|.+.++...+
T Consensus 142 EQQRv-aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 142 EQQRV-AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHHHH-HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhc
Confidence 34443 456666677778887754 32223333221111134589999999999987665
No 297
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=78.28 E-value=3.9 Score=38.10 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=31.2
Q ss_pred HHHHHHHhcc--CCeeEEEecCCCcccc-------ccccCCCCCCCCCcEEEEecCchHHhhhc
Q 039519 156 ASDIFRILSK--KKLLLLLDDIWERVDL-------TKVGVPFPDPENKSRIDFTTRFLEICSAM 210 (647)
Q Consensus 156 ~~~l~~~l~~--~r~LlVlDdv~~~~~~-------~~l~~~~~~~~~gs~IivTTR~~~v~~~~ 210 (647)
...+...+.. ++-|+++|..-..-+. ..+...+.. ..++.+|++|...++....
T Consensus 66 ~~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 66 MKETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred HHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 3345555544 7889999998653221 111111111 1367799999988775543
No 298
>PRK07667 uridine kinase; Provisional
Probab=78.02 E-value=1.7 Score=40.82 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=20.6
Q ss_pred HHHHHHHhhh--CCceEEEEEccCccCCC
Q 039519 85 FDKVRRCLRE--EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 85 ~~~i~~~L~~--~~~~vi~I~G~gGiGKT 111 (647)
.+.|.+.+.. +...+|||.|.+|+|||
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKS 31 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKT 31 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHH
Confidence 4556666653 45579999999999999
No 299
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=77.99 E-value=2 Score=41.65 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=15.5
Q ss_pred CCceEEEEEccCccCCC
Q 039519 95 EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 95 ~~~~vi~I~G~gGiGKT 111 (647)
+...+|||.|..|+|||
T Consensus 31 ~~~~iigi~G~~GsGKT 47 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKS 47 (229)
T ss_pred CCCEEEEEECCCCCCHH
Confidence 46789999999999999
No 300
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=77.97 E-value=11 Score=39.65 Aligned_cols=24 Identities=17% Similarity=0.048 Sum_probs=19.5
Q ss_pred ccchHHHHHHHHHHHHHhcccccc
Q 039519 335 RSGAYDEGYYIIGILLHACLLEEE 358 (647)
Q Consensus 335 ~~~~~~~~~~~~~~L~~~~ll~~~ 358 (647)
...+++.|-...++|.++||-+.+
T Consensus 349 i~~~RqiamyL~r~lt~~Slp~IG 372 (408)
T COG0593 349 IVRPRQIAMYLARELTNLSLPEIG 372 (408)
T ss_pred cchHHHHHHHHHHHHccCcHHHHH
Confidence 556778888888899999998876
No 301
>CHL00195 ycf46 Ycf46; Provisional
Probab=77.91 E-value=6.6 Score=42.59 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=24.1
Q ss_pred CCcccchHHHHHHHHHhh---h-------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLR---E-------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~---~-------~~~~vi~I~G~gGiGKT 111 (647)
+.+.|.+..++.+.+... . ...+-|-++|.+|+|||
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKT 273 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKS 273 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHH
Confidence 345687777666654321 1 13456889999999999
No 302
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=77.87 E-value=6.7 Score=38.04 Aligned_cols=78 Identities=9% Similarity=0.114 Sum_probs=47.0
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcC------------------C
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDES------------------W 147 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------------------~ 147 (647)
.-+++.|+|.+|+||| ...=..++|++..++ ..++.+++ .+++..... .
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 100 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGFEW 100 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccccc
Confidence 4578999999999999 112247888888764 34555543 223321100 0
Q ss_pred CCCCHHHHHHHHHHHhcc-CCeeEEEecCC
Q 039519 148 KNGSLEDKASDIFRILSK-KKLLLLLDDIW 176 (647)
Q Consensus 148 ~~~~~~~~~~~l~~~l~~-~r~LlVlDdv~ 176 (647)
...+.++....+.+.+.. +.-++|+|.+.
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 122345666677776654 55578888875
No 303
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=77.86 E-value=4.3 Score=43.17 Aligned_cols=82 Identities=17% Similarity=0.092 Sum_probs=43.2
Q ss_pred CceEEEEEccCccCCC--------C-CCcceEEEEEEcCccCHHHHHHHHHHHhCCCC-cC-CC-CCCHH------HHHH
Q 039519 96 QVGIIGLYGMGGLLGA--------P-NDFDVVIWMVVSKDLQLEKIQERIGRRIGFLD-ES-WK-NGSLE------DKAS 157 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT--------~-~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-~~-~~-~~~~~------~~~~ 157 (647)
.-..++|+|..|+||| . .....++|+.-.+..++..+....+....... .- .+ +.... ...-
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a~ 243 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTAT 243 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 3458999999999999 1 22234455543344455555544443321100 00 01 11111 1122
Q ss_pred HHHHHh--ccCCeeEEEecCCC
Q 039519 158 DIFRIL--SKKKLLLLLDDIWE 177 (647)
Q Consensus 158 ~l~~~l--~~~r~LlVlDdv~~ 177 (647)
.+.+++ +++.+|+++||+-.
T Consensus 244 ~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 244 AIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHcCCCEEEeccchHH
Confidence 344444 47999999999965
No 304
>PRK08149 ATP synthase SpaL; Validated
Probab=77.72 E-value=6.4 Score=41.74 Aligned_cols=82 Identities=12% Similarity=0.159 Sum_probs=45.7
Q ss_pred CceEEEEEccCccCCC--------CCCcceEEEEEEcCc-cCHHHHHHHHHHHhCCCC-----cCCCCCC-----HHHHH
Q 039519 96 QVGIIGLYGMGGLLGA--------PNDFDVVIWMVVSKD-LQLEKIQERIGRRIGFLD-----ESWKNGS-----LEDKA 156 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT--------~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~-----~~~~~ 156 (647)
.-..++|+|..|+||| ...-+.++...+... .++.++............ ...+... .....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~a 229 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVA 229 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHHH
Confidence 4568999999999999 222333334444443 356666666665432110 0001111 11122
Q ss_pred HHHHHHh--ccCCeeEEEecCCC
Q 039519 157 SDIFRIL--SKKKLLLLLDDIWE 177 (647)
Q Consensus 157 ~~l~~~l--~~~r~LlVlDdv~~ 177 (647)
..+.+++ +++++|+++||+-.
T Consensus 230 ~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 230 TTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHcCCCEEEEccchHH
Confidence 3344444 58999999999965
No 305
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=77.67 E-value=3.9 Score=38.58 Aligned_cols=15 Identities=40% Similarity=0.282 Sum_probs=13.8
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+|||+|+.|+|||
T Consensus 2 ~~iIglTG~igsGKS 16 (201)
T COG0237 2 MLIIGLTGGIGSGKS 16 (201)
T ss_pred ceEEEEecCCCCCHH
Confidence 368999999999999
No 306
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=77.62 E-value=4.6 Score=42.22 Aligned_cols=75 Identities=23% Similarity=0.244 Sum_probs=41.4
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcCC---CCCCHHHHHHHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDESW---KNGSLEDKASDIFRI 162 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~ 162 (647)
.-.++.|.|.+|+||| ...-..++|++..+. ...+.. -++.++...+.. ...+.++..+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs--~~qi~~-Ra~rlg~~~~~l~l~~e~~le~I~~~i~-- 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES--PEQIKL-RADRLGISTENLYLLAETNLEDILASIE-- 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC--HHHHHH-HHHHcCCCcccEEEEccCcHHHHHHHHH--
Confidence 3568999999999999 222246777776543 333322 234455432211 2233444444332
Q ss_pred hccCCeeEEEecCC
Q 039519 163 LSKKKLLLLLDDIW 176 (647)
Q Consensus 163 l~~~r~LlVlDdv~ 176 (647)
..+.-+||+|.+.
T Consensus 156 -~~~~~lVVIDSIq 168 (372)
T cd01121 156 -ELKPDLVIIDSIQ 168 (372)
T ss_pred -hcCCcEEEEcchH
Confidence 2356678888874
No 307
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=77.45 E-value=2.7 Score=36.06 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=25.1
Q ss_pred CcccchHHHHHHHHHhhh-------CCceEEEEEccCccCCC
Q 039519 77 PTVGLESTFDKVRRCLRE-------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 77 ~~vGr~~~~~~i~~~L~~-------~~~~vi~I~G~gGiGKT 111 (647)
.++|.+-..+.+.+.+.+ ...-|++.+|.+|+|||
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn 67 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKN 67 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHH
Confidence 456766555555555542 35679999999999999
No 308
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=77.26 E-value=3.8 Score=43.84 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=50.1
Q ss_pred CceEEEEEccCccCCC-----------CCCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCCc----CCCCCCHH------
Q 039519 96 QVGIIGLYGMGGLLGA-----------PNDFDVVIWMVVSKDL-QLEKIQERIGRRIGFLDE----SWKNGSLE------ 153 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT-----------~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~------ 153 (647)
.-.-++|+|-+|+||| +.+-+.++++-+++.. .+.++.+.+...-..... ...+....
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 4457999999999999 3346777777776654 466777776544211100 00111111
Q ss_pred HHHHHHHHHh---ccCCeeEEEecCCC
Q 039519 154 DKASDIFRIL---SKKKLLLLLDDIWE 177 (647)
Q Consensus 154 ~~~~~l~~~l---~~~r~LlVlDdv~~ 177 (647)
..+-.+.+++ +++++|+++||+-.
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccchH
Confidence 1233455565 37999999999954
No 309
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=77.13 E-value=2.1 Score=42.59 Aligned_cols=26 Identities=15% Similarity=0.069 Sum_probs=19.3
Q ss_pred HHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 85 FDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 85 ~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
...+.+.+...+. -|-++|..|+|||
T Consensus 22 ~~~ll~~l~~~~~-pvLl~G~~GtGKT 47 (272)
T PF12775_consen 22 YSYLLDLLLSNGR-PVLLVGPSGTGKT 47 (272)
T ss_dssp HHHHHHHHHHCTE-EEEEESSTTSSHH
T ss_pred HHHHHHHHHHcCC-cEEEECCCCCchh
Confidence 4556666666654 5579999999999
No 310
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=77.11 E-value=12 Score=36.92 Aligned_cols=82 Identities=9% Similarity=0.090 Sum_probs=46.3
Q ss_pred CceEEEEEccCccCCC---------CCCcceE-EEEEEcCcc-CHHHHHHHHHHHhCCCC-----cCCCCCCHHHH----
Q 039519 96 QVGIIGLYGMGGLLGA---------PNDFDVV-IWMVVSKDL-QLEKIQERIGRRIGFLD-----ESWKNGSLEDK---- 155 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT---------~~~F~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~---- 155 (647)
.-.-++|+|-+|+||| ...-+.+ +++-+++.. .+.++.+.+...=.... .. .+......
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t-~d~~~~~r~~a~ 146 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQKGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAAT-ASDPAPLQYLAP 146 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhcCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeC-CCCchhHHHHHH
Confidence 3457899999999999 2233544 555666654 46677777664321110 00 11111111
Q ss_pred --HHHHHHHh--ccCCeeEEEecCCCc
Q 039519 156 --ASDIFRIL--SKKKLLLLLDDIWER 178 (647)
Q Consensus 156 --~~~l~~~l--~~~r~LlVlDdv~~~ 178 (647)
.-.+.+++ +++.+|+|+||+-.-
T Consensus 147 ~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 147 YTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 22333333 579999999999553
No 311
>PRK06547 hypothetical protein; Provisional
Probab=77.07 E-value=2 Score=39.54 Aligned_cols=24 Identities=13% Similarity=-0.011 Sum_probs=19.0
Q ss_pred HHHHhhhCCceEEEEEccCccCCC
Q 039519 88 VRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 88 i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
+...+......+|+|.|.+|+|||
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKT 29 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKT 29 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHH
Confidence 334455567889999999999999
No 312
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=76.89 E-value=1.7 Score=38.81 Aligned_cols=14 Identities=21% Similarity=0.024 Sum_probs=12.5
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
--|+|.||+|+|||
T Consensus 6 mki~ITG~PGvGKt 19 (179)
T COG1618 6 MKIFITGRPGVGKT 19 (179)
T ss_pred eEEEEeCCCCccHH
Confidence 35899999999999
No 313
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=76.78 E-value=4.5 Score=39.42 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=34.7
Q ss_pred HHHHHhccCCeeEEEecCCCc------cccccccCCCCCCCCCcEEEEecCchHHhhhcccceeEec
Q 039519 158 DIFRILSKKKLLLLLDDIWER------VDLTKVGVPFPDPENKSRIDFTTRFLEICSAMQAHEFLKV 218 (647)
Q Consensus 158 ~l~~~l~~~r~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~~~~~~~~ 218 (647)
.|.+.|.++.=|+|||.--.- ..+-.+...+.. .|+.|++.|-+-...... .++.+.+
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--eg~tIl~vtHDL~~v~~~-~D~vi~L 212 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--EGKTVLMVTHDLGLVMAY-FDRVICL 212 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCcHHhHhh-CCEEEEE
Confidence 567778889999999976432 222223333332 278899999876554432 2334444
No 314
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=76.74 E-value=16 Score=34.99 Aligned_cols=14 Identities=14% Similarity=-0.050 Sum_probs=13.4
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
++++|.|..|.|||
T Consensus 31 ~~~~l~Gpn~sGKs 44 (216)
T cd03284 31 QILLITGPNMAGKS 44 (216)
T ss_pred eEEEEECCCCCChH
Confidence 78999999999999
No 315
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=76.73 E-value=9.2 Score=38.08 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=40.2
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHH--HHHHHHHHHhCCCCcC-CCCCCHHH-HHHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLE--KIQERIGRRIGFLDES-WKNGSLED-KASDIFR 161 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~~~-~~~~~~~~-~~~~l~~ 161 (647)
+.++|.++|.+|+||| ...-..+.+++. +.+... +-+.......+...-. ....+... ....+..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~-D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAG-DTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeC-CCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 4689999999999999 222134555553 334332 2223334444422100 01122222 2333444
Q ss_pred HhccCCeeEEEecCCC
Q 039519 162 ILSKKKLLLLLDDIWE 177 (647)
Q Consensus 162 ~l~~~r~LlVlDdv~~ 177 (647)
...+..=++++|-.-.
T Consensus 150 ~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 150 AKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHCCCCEEEEeCCCC
Confidence 3444456778887743
No 316
>PRK04328 hypothetical protein; Provisional
Probab=76.72 E-value=7.4 Score=38.21 Aligned_cols=31 Identities=10% Similarity=0.074 Sum_probs=23.1
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCc
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKD 126 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~ 126 (647)
.-+++.|.|.+|+||| ...-...+|++..++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCC
Confidence 4578999999999999 122346788887664
No 317
>PRK13236 nitrogenase reductase; Reviewed
Probab=76.56 E-value=1.2 Score=45.12 Aligned_cols=18 Identities=33% Similarity=0.709 Sum_probs=16.1
Q ss_pred hCCceEEEEEccCccCCC
Q 039519 94 EEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 94 ~~~~~vi~I~G~gGiGKT 111 (647)
+++.+||++.|.||+|||
T Consensus 3 ~~~~~~~~~~GKGGVGKT 20 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKS 20 (296)
T ss_pred CcCceEEEEECCCcCCHH
Confidence 356799999999999999
No 318
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=76.53 E-value=22 Score=40.02 Aligned_cols=86 Identities=16% Similarity=0.183 Sum_probs=50.5
Q ss_pred CCcccchHHHHHHHHHhh---------hCC---ceEEEEEccCccCCC------CCCcceEEEEEEcCccCHHHHHHHHH
Q 039519 76 EPTVGLESTFDKVRRCLR---------EEQ---VGIIGLYGMGGLLGA------PNDFDVVIWMVVSKDLQLEKIQERIG 137 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~---------~~~---~~vi~I~G~gGiGKT------~~~F~~~~wv~~s~~~~~~~~~~~i~ 137 (647)
..+=|.++.+.+|.+-+. +.+ .+=|-.+|.+|.||| ...|. .-|++|..+ +++..
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-L~FlSVKGP----ELLNM-- 744 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-LNFLSVKGP----ELLNM-- 744 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-eeEEeecCH----HHHHH--
Confidence 445688888888887654 122 345778999999999 22222 345555443 11111
Q ss_pred HHhCCCCcCCCCCCHHHHHHHHHHHhccCCeeEEEecCCC
Q 039519 138 RRIGFLDESWKNGSLEDKASDIFRILSKKKLLLLLDDIWE 177 (647)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~ 177 (647)
.+ ..+++...+.+.+.=..++|.|.||.+++
T Consensus 745 -YV--------GqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 745 -YV--------GQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred -Hh--------cchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 11 12333444444444346899999999975
No 319
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=76.45 E-value=12 Score=39.71 Aligned_cols=82 Identities=15% Similarity=0.221 Sum_probs=45.9
Q ss_pred CCceEEEEEccCccCCC--------CCCcceEEEEEEcCc-cCHHHHHHHHHHHhCCCCc------CCCCCCHHH-----
Q 039519 95 EQVGIIGLYGMGGLLGA--------PNDFDVVIWMVVSKD-LQLEKIQERIGRRIGFLDE------SWKNGSLED----- 154 (647)
Q Consensus 95 ~~~~vi~I~G~gGiGKT--------~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~------~~~~~~~~~----- 154 (647)
..-..++|+|..|+||| ....+..++..+++. ..+.++..+.... ..... ..+......
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRgrEv~efl~~~~~~-~~~~rtv~vv~tsd~p~~~r~~a~~ 231 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSE-ETRKRCVIVVATSDRPALERVRALF 231 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCCchHHHHHHHHhhcc-CCcceEEEEEECCCCCHHHHHHHHH
Confidence 34568999999999999 334455566556554 3455555554321 10000 001111111
Q ss_pred HHHHHHHHh--ccCCeeEEEecCCC
Q 039519 155 KASDIFRIL--SKKKLLLLLDDIWE 177 (647)
Q Consensus 155 ~~~~l~~~l--~~~r~LlVlDdv~~ 177 (647)
..-.+.+++ +++++|+++||+-.
T Consensus 232 ~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 232 VATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 122344555 47899999999965
No 320
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=76.44 E-value=8.6 Score=44.47 Aligned_cols=36 Identities=25% Similarity=0.241 Sum_probs=29.6
Q ss_pred CCcccchHHHHHHHHHhhh------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~------~~~~vi~I~G~gGiGKT 111 (647)
...+|.+..+++|.+++.. ....++.++|.+|+|||
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKT 363 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKT 363 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHH
Confidence 4568999999999987762 24568999999999999
No 321
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=76.43 E-value=2.7 Score=40.49 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=15.4
Q ss_pred HHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 85 FDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 85 ~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
.+.+...+.... +..|+|.+|.|||
T Consensus 7 ~~Ai~~~~~~~~--~~~i~GpPGTGKT 31 (236)
T PF13086_consen 7 REAIQSALSSNG--ITLIQGPPGTGKT 31 (236)
T ss_dssp HHHHHHHCTSSE---EEEE-STTSSHH
T ss_pred HHHHHHHHcCCC--CEEEECCCCCChH
Confidence 344444443332 7889999999999
No 322
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=76.41 E-value=5.9 Score=46.02 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=27.8
Q ss_pred CCcccchHHHHHHHHHhhh------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~------~~~~vi~I~G~gGiGKT 111 (647)
...+|.+..++.|.+.+.. ....++.++|.+|+|||
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT 361 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKT 361 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHH
Confidence 3467998888888886642 13457889999999999
No 323
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=76.20 E-value=3.9 Score=43.24 Aligned_cols=82 Identities=21% Similarity=0.270 Sum_probs=43.7
Q ss_pred CceEEEEEccCccCCC--------CCCcceEEEEEEcC-ccCHHHHHHHHHHHhCCCC-----cCCCCCCHH-----HHH
Q 039519 96 QVGIIGLYGMGGLLGA--------PNDFDVVIWMVVSK-DLQLEKIQERIGRRIGFLD-----ESWKNGSLE-----DKA 156 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT--------~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~-----~~~ 156 (647)
.-..++|+|..|+||| ...-+....+.+.+ ...+.++.+..+..-+... ...+..... ...
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a 218 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTA 218 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHH
Confidence 4468999999999999 11222222233333 3456666665544422110 000111111 112
Q ss_pred HHHHHHh--ccCCeeEEEecCCC
Q 039519 157 SDIFRIL--SKKKLLLLLDDIWE 177 (647)
Q Consensus 157 ~~l~~~l--~~~r~LlVlDdv~~ 177 (647)
-.+.+++ +++++|+++||+-.
T Consensus 219 ~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 219 TAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHcCCCEEEeccchhH
Confidence 2355555 57999999999965
No 324
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=76.16 E-value=4.1 Score=43.74 Aligned_cols=64 Identities=27% Similarity=0.313 Sum_probs=37.4
Q ss_pred ceEEEEEccCccCCC-----------CCCcc-eEEEEEEcCccCHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHhc
Q 039519 97 VGIIGLYGMGGLLGA-----------PNDFD-VVIWMVVSKDLQLEKIQERIGRRIGFLDESWKNGSLEDKASDIFRILS 164 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT-----------~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 164 (647)
..-+.|+|.+|+||| ..... .++|++. .++...+...+.. .... .+++.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~-------~~~~----~f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKE-------GKLN----EFREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhc-------ccHH----HHHHHHH
Confidence 346899999999999 22222 4455543 3455555555431 1122 2333444
Q ss_pred cCCeeEEEecCCC
Q 039519 165 KKKLLLLLDDIWE 177 (647)
Q Consensus 165 ~~r~LlVlDdv~~ 177 (647)
...-+||+||+..
T Consensus 193 ~~~dvLlIDDi~~ 205 (440)
T PRK14088 193 KKVDVLLIDDVQF 205 (440)
T ss_pred hcCCEEEEechhh
Confidence 4456899999974
No 325
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=75.95 E-value=5.8 Score=37.04 Aligned_cols=14 Identities=14% Similarity=-0.002 Sum_probs=12.9
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
.++.|.|.+|+|||
T Consensus 33 ~l~~i~g~~g~GKT 46 (193)
T PF13481_consen 33 ELTLIAGPPGSGKT 46 (193)
T ss_dssp SEEEEEECSTSSHH
T ss_pred eEEEEEeCCCCCHH
Confidence 48889999999999
No 326
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=75.93 E-value=1.7 Score=42.15 Aligned_cols=111 Identities=11% Similarity=0.037 Sum_probs=57.0
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEE---------EcCccCHHHH--HHHHHHHhCC--CCcCCC----
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMV---------VSKDLQLEKI--QERIGRRIGF--LDESWK---- 148 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~---------~s~~~~~~~~--~~~i~~~l~~--~~~~~~---- 148 (647)
+...|.++||+|+||| ...+..-+-|. ..-+.|+++. .++..++.+. ++.-..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNL 97 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNL 97 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHHH
Confidence 4557888999999999 22232222222 1222345443 5666776543 222111
Q ss_pred -CCCHHHHHHHHHHHhccCCeeEEEecCCCccccccccCCCCCCCCCcEEEEecCchHHhhhcccceeEecc
Q 039519 149 -NGSLEDKASDIFRILSKKKLLLLLDDIWERVDLTKVGVPFPDPENKSRIDFTTRFLEICSAMQAHEFLKVE 219 (647)
Q Consensus 149 -~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~~~~~~~~~ 219 (647)
....++..+.|.+.-..-+|.|| +.+-+++. |.|+..|+ ||. +..+....+.-.|-++
T Consensus 98 F~tk~dqv~~~iek~~~~~~~~li----DTPGQIE~----FtWSAsGs-IIt----e~lass~ptvv~YvvD 156 (366)
T KOG1532|consen 98 FATKFDQVIELIEKRAEEFDYVLI----DTPGQIEA----FTWSASGS-IIT----ETLASSFPTVVVYVVD 156 (366)
T ss_pred HHHHHHHHHHHHHHhhcccCEEEE----cCCCceEE----EEecCCcc-chH----hhHhhcCCeEEEEEec
Confidence 12345555666666555566654 44556554 45666776 331 2334434444455553
No 327
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=75.69 E-value=9.1 Score=33.92 Aligned_cols=16 Identities=31% Similarity=0.293 Sum_probs=14.1
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
.-.+++|+|..|.|||
T Consensus 25 ~Ge~~~i~G~nGsGKS 40 (144)
T cd03221 25 PGDRIGLVGRNGAGKS 40 (144)
T ss_pred CCCEEEEECCCCCCHH
Confidence 3468999999999999
No 328
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=75.39 E-value=6.7 Score=45.24 Aligned_cols=94 Identities=13% Similarity=0.277 Sum_probs=54.5
Q ss_pred CCcccchHHHHHHHHHhhh------C--CceEEEEEccCccCCC-------CCCcc-eEEEEEEcCccCHHHHHHHHHHH
Q 039519 76 EPTVGLESTFDKVRRCLRE------E--QVGIIGLYGMGGLLGA-------PNDFD-VVIWMVVSKDLQLEKIQERIGRR 139 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~------~--~~~vi~I~G~gGiGKT-------~~~F~-~~~wv~~s~~~~~~~~~~~i~~~ 139 (647)
..++|.++.+..|.+.+.. + ...+..+.|+-|+||| ..-|+ .-.+|++ |+.+..+ +.+.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~Iri----Dmse~~e-vskl 636 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRL----DMSEFQE-VSKL 636 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEe----chhhhhh-hhhc
Confidence 4457888888888877763 2 3567888999999999 33343 2233333 3333444 3333
Q ss_pred hCCCCcCCCCCCHHHHHHHHHHHhccCCee-EEEecCCCc
Q 039519 140 IGFLDESWKNGSLEDKASDIFRILSKKKLL-LLLDDIWER 178 (647)
Q Consensus 140 l~~~~~~~~~~~~~~~~~~l~~~l~~~r~L-lVlDdv~~~ 178 (647)
++.+. ..... +....+-+.++.+.|- |.||||+..
T Consensus 637 igsp~-gyvG~---e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 637 IGSPP-GYVGK---EEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred cCCCc-ccccc---hhHHHHHHHHhcCCceEEEEechhhc
Confidence 33322 11222 2233667777777765 455999864
No 329
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=75.38 E-value=6.4 Score=40.89 Aligned_cols=79 Identities=10% Similarity=0.111 Sum_probs=39.9
Q ss_pred HHHHhccCCeeEEEecCCCcc---ccccccCCCCCCCCCcEEEEecCchHHhhhcccceeEec-cccc-cCCCChHHHHH
Q 039519 159 IFRILSKKKLLLLLDDIWERV---DLTKVGVPFPDPENKSRIDFTTRFLEICSAMQAHEFLKV-EDVL-KNHPNIPELAR 233 (647)
Q Consensus 159 l~~~l~~~r~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~~~~~~~~-~~~~-~~~~~~~~~~~ 233 (647)
+.+.-.+.+=.||||.--+.- .++.+..++... +|..|+|+--.+-|.. .++. .+-+ .+.+ .-+.+++..-+
T Consensus 715 laeLal~~PDvlILDEPTNNLDIESIDALaEAIney-~GgVi~VsHDeRLi~e-T~C~-LwVvE~Q~i~eIdGdFeDYkk 791 (807)
T KOG0066|consen 715 LAELALGGPDVLILDEPTNNLDIESIDALAEAINEY-NGGVIMVSHDERLIVE-TDCN-LWVVENQGIDEIDGDFEDYKK 791 (807)
T ss_pred HHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc-cCcEEEEecccceeee-cCce-EEEEccCChhhccccHHHHHH
Confidence 333334667788899876543 344445554444 4555555544333322 1111 1222 2222 33557778888
Q ss_pred HHHHHhc
Q 039519 234 SVAQECA 240 (647)
Q Consensus 234 ~i~~~c~ 240 (647)
+++..+|
T Consensus 792 EVLdaLG 798 (807)
T KOG0066|consen 792 EVLDALG 798 (807)
T ss_pred HHHHHHH
Confidence 8776544
No 330
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=75.31 E-value=3.3 Score=44.46 Aligned_cols=24 Identities=8% Similarity=-0.035 Sum_probs=16.7
Q ss_pred ccchHHHHHHHHHHHHHhcccccc
Q 039519 335 RSGAYDEGYYIIGILLHACLLEEE 358 (647)
Q Consensus 335 ~~~~~~~~~~~~~~L~~~~ll~~~ 358 (647)
...+++.|-...+++.+.++-+.+
T Consensus 381 i~~~Rqiamyl~r~~t~~s~~~IG 404 (445)
T PRK12422 381 YVLPRQVAMYLCRQKLSLSYVKIG 404 (445)
T ss_pred cccHHHHHHHHHHHhcCCCHHHHH
Confidence 346677777777777777776664
No 331
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=75.27 E-value=4.2 Score=40.41 Aligned_cols=15 Identities=27% Similarity=0.131 Sum_probs=13.7
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
...++|||.+|.|||
T Consensus 166 Pkg~ll~GppGtGKT 180 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKT 180 (388)
T ss_pred CceeEEeCCCCCchh
Confidence 567899999999999
No 332
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=75.16 E-value=2.7 Score=38.18 Aligned_cols=107 Identities=14% Similarity=0.062 Sum_probs=51.9
Q ss_pred CceEEEEEccCccCCC---------CCCcceEEEEEEcCc--cCHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHhc
Q 039519 96 QVGIIGLYGMGGLLGA---------PNDFDVVIWMVVSKD--LQLEKIQERIGRRIGFLDESWKNGSLEDKASDIFRILS 164 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT---------~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 164 (647)
.-.+++|.|..|.||| .....+.+++.-... .+.... ..+.++... +-..-+...-.+.+.+-
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~---qLS~G~~qrl~laral~ 98 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDA---RRAGIAMVY---QLSVGERQMVEIARALA 98 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHH---HhcCeEEEE---ecCHHHHHHHHHHHHHh
Confidence 3458999999999999 233455566532111 111111 111111110 11122222234455555
Q ss_pred cCCeeEEEecCCCccc---cccccCCCCC-CCCCcEEEEecCchHHhh
Q 039519 165 KKKLLLLLDDIWERVD---LTKVGVPFPD-PENKSRIDFTTRFLEICS 208 (647)
Q Consensus 165 ~~r~LlVlDdv~~~~~---~~~l~~~~~~-~~~gs~IivTTR~~~v~~ 208 (647)
..+-++++|+.-..-+ .+.+...+.. ...|..||++|.+...+.
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 6677888899865322 1222112211 123556888888766443
No 333
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=75.10 E-value=9.4 Score=36.85 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=25.1
Q ss_pred ccchHHHHHHHHHhhh-------------CCceEEEEEccCccCCC
Q 039519 79 VGLESTFDKVRRCLRE-------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 79 vGr~~~~~~i~~~L~~-------------~~~~vi~I~G~gGiGKT 111 (647)
=|.|..++++.+.+.- ...+=|..+|++|.|||
T Consensus 174 GGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKT 219 (424)
T KOG0652|consen 174 GGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKT 219 (424)
T ss_pred ccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHH
Confidence 4788888888887641 13455778999999999
No 334
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=74.83 E-value=5.5 Score=44.22 Aligned_cols=66 Identities=20% Similarity=0.202 Sum_probs=42.3
Q ss_pred CceEEEEEccCccCCC-------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHhc--cC
Q 039519 96 QVGIIGLYGMGGLLGA-------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDESWKNGSLEDKASDIFRILS--KK 166 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT-------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~ 166 (647)
.-++.-++|.+|+||| ++.=-.++=|.+|+......+-..|...+.... .+. ++
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s-----------------~l~adsr 387 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHS-----------------VLDADSR 387 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhcc-----------------ccccCCC
Confidence 3568899999999999 222223455566666666666666655543211 111 57
Q ss_pred CeeEEEecCCCc
Q 039519 167 KLLLLLDDIWER 178 (647)
Q Consensus 167 r~LlVlDdv~~~ 178 (647)
...+|+|.++-.
T Consensus 388 P~CLViDEIDGa 399 (877)
T KOG1969|consen 388 PVCLVIDEIDGA 399 (877)
T ss_pred cceEEEecccCC
Confidence 788999999864
No 335
>PRK05541 adenylylsulfate kinase; Provisional
Probab=74.66 E-value=3.6 Score=37.86 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=14.1
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+|.+.|+.|+|||
T Consensus 6 ~~~~I~i~G~~GsGKs 21 (176)
T PRK05541 6 NGYVIWITGLAGSGKT 21 (176)
T ss_pred CCCEEEEEcCCCCCHH
Confidence 3468999999999999
No 336
>PTZ00494 tuzin-like protein; Provisional
Probab=74.59 E-value=57 Score=34.66 Aligned_cols=65 Identities=20% Similarity=0.139 Sum_probs=49.9
Q ss_pred CCcccchHHHHHHHHHhhh---CCceEEEEEccCccCCC-------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE---EQVGIIGLYGMGGLLGA-------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFL 143 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~---~~~~vi~I~G~gGiGKT-------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 143 (647)
..+|.|+.+-..+.+.|.. ...+++.+.|.-|.||+ ++.=-..++|++..+ ++-++.+.+.++.+
T Consensus 371 ~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~paV~VDVRg~---EDtLrsVVKALgV~ 445 (664)
T PTZ00494 371 AFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVALVHVDVGGT---EDTLRSVVRALGVS 445 (664)
T ss_pred ccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCCCeEEEEecCC---cchHHHHHHHhCCC
Confidence 5679999988888887765 47899999999999999 333345678888765 34577778888764
No 337
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=73.95 E-value=4.2 Score=40.26 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=30.9
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQERIGR 138 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~i~~ 138 (647)
.-+++.|+|.+|+||| ......++||+..+. ...+.+...+
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~--~~~l~~~~~~ 72 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES--PEELLENARS 72 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC--HHHHHHHHHH
Confidence 5689999999999999 444678999998774 4455555443
No 338
>PRK05922 type III secretion system ATPase; Validated
Probab=73.95 E-value=5.1 Score=42.50 Aligned_cols=83 Identities=10% Similarity=0.137 Sum_probs=43.3
Q ss_pred CceEEEEEccCccCCC--------CCCcceEEEEEEcCc-cCHHHHHHHHHHHhCCCCcCC----CCCCHH------HHH
Q 039519 96 QVGIIGLYGMGGLLGA--------PNDFDVVIWMVVSKD-LQLEKIQERIGRRIGFLDESW----KNGSLE------DKA 156 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT--------~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~----~~~~~~------~~~ 156 (647)
.-..++|+|..|+||| ....+....+-+++. ..+..++.+..........-+ .+.... ...
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~a 235 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAA 235 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHHHH
Confidence 4457999999999999 222333333334332 234455555443332211000 011111 112
Q ss_pred HHHHHHh--ccCCeeEEEecCCCc
Q 039519 157 SDIFRIL--SKKKLLLLLDDIWER 178 (647)
Q Consensus 157 ~~l~~~l--~~~r~LlVlDdv~~~ 178 (647)
-.+.+++ +++++|+++||+-.-
T Consensus 236 ~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 236 MTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHcCCCEEEeccchhHH
Confidence 2344555 479999999999653
No 339
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=73.83 E-value=5.4 Score=42.44 Aligned_cols=83 Identities=19% Similarity=0.245 Sum_probs=50.1
Q ss_pred CceEEEEEccCccCCC-----------CCCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCCc----CCCCCCHH------
Q 039519 96 QVGIIGLYGMGGLLGA-----------PNDFDVVIWMVVSKDL-QLEKIQERIGRRIGFLDE----SWKNGSLE------ 153 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT-----------~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~------ 153 (647)
.-.-++|.|-+|+||| +.+-+.++++-+++.. .+.++.+.+...=..... ...+....
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 3457899999999999 2234678888887765 466677766543111100 00111111
Q ss_pred HHHHHHHHHhc---cCCeeEEEecCCCc
Q 039519 154 DKASDIFRILS---KKKLLLLLDDIWER 178 (647)
Q Consensus 154 ~~~~~l~~~l~---~~r~LlVlDdv~~~ 178 (647)
..+-.+.++++ ++++|+++||+-.-
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 12334556654 58999999999653
No 340
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=73.82 E-value=5.8 Score=36.36 Aligned_cols=51 Identities=16% Similarity=0.135 Sum_probs=28.1
Q ss_pred HHHHhccCCeeEEEecCCCccc---cccccCCCCCCCCCcEEEEecCchHHhhh
Q 039519 159 IFRILSKKKLLLLLDDIWERVD---LTKVGVPFPDPENKSRIDFTTRFLEICSA 209 (647)
Q Consensus 159 l~~~l~~~r~LlVlDdv~~~~~---~~~l~~~~~~~~~gs~IivTTR~~~v~~~ 209 (647)
+.+.+-.+.-++++|+.-..-+ .+.+...+.....+..||++|.+......
T Consensus 107 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 107 IARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 4555556778999999875322 11121111111124568888887766543
No 341
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=73.71 E-value=6.4 Score=38.92 Aligned_cols=83 Identities=13% Similarity=0.119 Sum_probs=49.4
Q ss_pred CceEEEEEccCccCCC-------CCC-------cceEEEEEEcCcc-CHHHHHHHHHHHhCCCCc----CCCCCCHH---
Q 039519 96 QVGIIGLYGMGGLLGA-------PND-------FDVVIWMVVSKDL-QLEKIQERIGRRIGFLDE----SWKNGSLE--- 153 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT-------~~~-------F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~--- 153 (647)
.-.-++|.|-.|+||| ++. -+.++++-+++.. .+.++.+.+...=..... ...+....
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3457899999999999 222 3677888887764 467777776554211100 00011111
Q ss_pred ---HHHHHHHHHhc---cCCeeEEEecCCCc
Q 039519 154 ---DKASDIFRILS---KKKLLLLLDDIWER 178 (647)
Q Consensus 154 ---~~~~~l~~~l~---~~r~LlVlDdv~~~ 178 (647)
...-.+.++++ ++++|+++||+-.-
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 11234555552 68999999998653
No 342
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=73.54 E-value=12 Score=39.40 Aligned_cols=77 Identities=17% Similarity=0.185 Sum_probs=42.2
Q ss_pred CceEEEEEccCccCCC------CCCc--------ceEEEEEEcCccCHHHH--HHHHHHHhCCCCcCCCCCCHHHHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA------PNDF--------DVVIWMVVSKDLQLEKI--QERIGRRIGFLDESWKNGSLEDKASDI 159 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT------~~~F--------~~~~wv~~s~~~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~~~~l 159 (647)
..++|.++|..|+||| ..+| ..+..|++. ++..... ++..++.++.+.. ...+..+....+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L 249 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEI 249 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHH
Confidence 3579999999999999 1111 234444443 4443332 4455555554321 223444444444
Q ss_pred HHHhccCCeeEEEecCCC
Q 039519 160 FRILSKKKLLLLLDDIWE 177 (647)
Q Consensus 160 ~~~l~~~r~LlVlDdv~~ 177 (647)
.+. ...-+|++|-+..
T Consensus 250 ~~~--~~~DlVLIDTaGr 265 (388)
T PRK12723 250 TQS--KDFDLVLVDTIGK 265 (388)
T ss_pred HHh--CCCCEEEEcCCCC
Confidence 443 4456888888853
No 343
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=73.51 E-value=6.2 Score=36.40 Aligned_cols=59 Identities=17% Similarity=0.137 Sum_probs=31.4
Q ss_pred HHHHHhccCCeeEEEecCCCccc---cccccCCCCCCCCCcEEEEecCchHHhhhcccceeEec
Q 039519 158 DIFRILSKKKLLLLLDDIWERVD---LTKVGVPFPDPENKSRIDFTTRFLEICSAMQAHEFLKV 218 (647)
Q Consensus 158 ~l~~~l~~~r~LlVlDdv~~~~~---~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~~~~~~~~ 218 (647)
.+.+.+-.++=++++|+....-+ -+.+...+.....+..||++|.+...... .++.+.+
T Consensus 108 ~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 108 ALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 34455556778889999875422 11111111111135668888887766542 3444444
No 344
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=73.49 E-value=4.9 Score=42.73 Aligned_cols=15 Identities=27% Similarity=0.233 Sum_probs=13.2
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
...+.|+|..|+|||
T Consensus 136 ~n~l~l~G~~G~GKT 150 (405)
T TIGR00362 136 YNPLFIYGGVGLGKT 150 (405)
T ss_pred CCeEEEECCCCCcHH
Confidence 356889999999999
No 345
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=73.48 E-value=5 Score=42.61 Aligned_cols=82 Identities=13% Similarity=0.140 Sum_probs=46.2
Q ss_pred CceEEEEEccCccCCC--------CCCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCCc----CCCCCCHHH------HH
Q 039519 96 QVGIIGLYGMGGLLGA--------PNDFDVVIWMVVSKDL-QLEKIQERIGRRIGFLDE----SWKNGSLED------KA 156 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT--------~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~------~~ 156 (647)
.-..++|+|..|+||| ....+.++.+-+++.. .+.++.++.+..-+.... ...+..... ..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~a 236 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNADADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLT 236 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHHH
Confidence 4568899999999999 2233455556666654 455666555443221100 001111111 12
Q ss_pred HHHHHHh--ccCCeeEEEecCCC
Q 039519 157 SDIFRIL--SKKKLLLLLDDIWE 177 (647)
Q Consensus 157 ~~l~~~l--~~~r~LlVlDdv~~ 177 (647)
-.+.+++ +++.+|+++||+-.
T Consensus 237 ~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 237 LAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHCCCcEEEEEeCcHH
Confidence 2344555 58999999999964
No 346
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=73.40 E-value=11 Score=34.88 Aligned_cols=112 Identities=15% Similarity=0.156 Sum_probs=55.6
Q ss_pred CceEEEEEccCccCCC---------CCCcceEEEEE---EcCccCHHHHHH------HHHHHhCCCCc---CCCCCC-HH
Q 039519 96 QVGIIGLYGMGGLLGA---------PNDFDVVIWMV---VSKDLQLEKIQE------RIGRRIGFLDE---SWKNGS-LE 153 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT---------~~~F~~~~wv~---~s~~~~~~~~~~------~i~~~l~~~~~---~~~~~~-~~ 153 (647)
.-.+++|+|..|.||| .....+.+++. +.. .+...... ++++.++.... ....-+ -+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 3468999999999999 22334555543 221 12222111 14455543221 011112 22
Q ss_pred HHHHHHHHHhccCCeeEEEecCCCccc---cccccCCCCCC-CC-CcEEEEecCchHHhh
Q 039519 154 DKASDIFRILSKKKLLLLLDDIWERVD---LTKVGVPFPDP-EN-KSRIDFTTRFLEICS 208 (647)
Q Consensus 154 ~~~~~l~~~l~~~r~LlVlDdv~~~~~---~~~l~~~~~~~-~~-gs~IivTTR~~~v~~ 208 (647)
...-.+.+.+-..+-++++|+.-..-+ .+.+...+... .. |..||++|.+.....
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 222234555566778889999865322 22222222111 12 566888887766543
No 347
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=73.01 E-value=9.7 Score=36.64 Aligned_cols=90 Identities=17% Similarity=0.196 Sum_probs=46.4
Q ss_pred ccCCeeEEEecCC---Ccccccc----ccCCCCCCCCCcEEEEecCchHHhhhccc---ceeEecccccc----------
Q 039519 164 SKKKLLLLLDDIW---ERVDLTK----VGVPFPDPENKSRIDFTTRFLEICSAMQA---HEFLKVEDVLK---------- 223 (647)
Q Consensus 164 ~~~r~LlVlDdv~---~~~~~~~----l~~~~~~~~~gs~IivTTR~~~v~~~~~~---~~~~~~~~~~~---------- 223 (647)
...+-|+++|..- +..+-.. +...+.. ..|+.+|+||-..++...... ....++.....
T Consensus 107 ~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~~~~~~Y 185 (222)
T cd03285 107 ATENSLIIIDELGRGTSTYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRTLTMLY 185 (222)
T ss_pred CCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCCcEeEEE
Confidence 3578899999993 3222111 1111211 246789999987766543221 11122200000
Q ss_pred ---CCCChHHHHHHHHHHhcCCchhHHHHhhHhhc
Q 039519 224 ---NHPNIPELARSVAQECAGLPLALITIGRVMAC 255 (647)
Q Consensus 224 ---~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~ 255 (647)
+-..-...|-++++.+ |+|-.+...|..+..
T Consensus 186 ~l~~G~~~~s~a~~~a~~~-g~p~~vi~~A~~~~~ 219 (222)
T cd03285 186 KVEKGACDQSFGIHVAELA-NFPKEVIEMAKQKAL 219 (222)
T ss_pred EEeeCCCCCcHHHHHHHHh-CcCHHHHHHHHHHHH
Confidence 0001135577777766 889888777766653
No 348
>PF13245 AAA_19: Part of AAA domain
Probab=72.97 E-value=2.3 Score=33.09 Aligned_cols=16 Identities=13% Similarity=0.002 Sum_probs=13.8
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
+-+++.|.|.+|.|||
T Consensus 9 ~~~~~vv~g~pGtGKT 24 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKT 24 (76)
T ss_pred hCCeEEEECCCCCCHH
Confidence 3467888999999999
No 349
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=72.75 E-value=4.2 Score=38.95 Aligned_cols=52 Identities=19% Similarity=0.124 Sum_probs=31.7
Q ss_pred HHHHHHhccCCeeEEEecCCCc-------cccccccCCCCCCCCCcEEEEecCchHHhhhc
Q 039519 157 SDIFRILSKKKLLLLLDDIWER-------VDLTKVGVPFPDPENKSRIDFTTRFLEICSAM 210 (647)
Q Consensus 157 ~~l~~~l~~~r~LlVlDdv~~~-------~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~ 210 (647)
-.+.+.|-..+-+|+-|.--.. +.++-+.. + ....|..||+.|.+..+|..+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~-~-~~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRE-L-NKERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHH-H-HHhcCCEEEEEcCCHHHHHhC
Confidence 3566677777888888865321 11222211 1 113477899999999998754
No 350
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=72.57 E-value=10 Score=38.70 Aligned_cols=82 Identities=16% Similarity=0.221 Sum_probs=43.6
Q ss_pred CceEEEEEccCccCCC--------CCCcceEEEEEEcC-ccCHHHHHHHHHHHhCCCC-----cCCCCCC-----HHHHH
Q 039519 96 QVGIIGLYGMGGLLGA--------PNDFDVVIWMVVSK-DLQLEKIQERIGRRIGFLD-----ESWKNGS-----LEDKA 156 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT--------~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~-----~~~~~~~-----~~~~~ 156 (647)
.-..++|+|..|.||| ...-+..+..-+.. ..++.++.......-+... ...+... .....
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~~a 147 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTA 147 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4467899999999999 11223333344443 3456666666554422110 0001111 11112
Q ss_pred HHHHHHh--ccCCeeEEEecCCC
Q 039519 157 SDIFRIL--SKKKLLLLLDDIWE 177 (647)
Q Consensus 157 ~~l~~~l--~~~r~LlVlDdv~~ 177 (647)
-.+.+++ +++.+|+++||+-.
T Consensus 148 ~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 148 TAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHcCCCeEEEeccchH
Confidence 2334444 58999999999854
No 351
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=72.55 E-value=1.6 Score=41.77 Aligned_cols=14 Identities=36% Similarity=0.691 Sum_probs=12.9
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
++|+|.|.||+|||
T Consensus 1 ~~iav~gKGGvGKT 14 (212)
T cd02117 1 RQIAIYGKGGIGKS 14 (212)
T ss_pred CEEEEECCCcCcHH
Confidence 47999999999999
No 352
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=72.54 E-value=11 Score=39.50 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=14.4
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
+.++|+++|.+|+|||
T Consensus 240 ~~~vI~LVGptGvGKT 255 (436)
T PRK11889 240 EVQTIALIGPTGVGKT 255 (436)
T ss_pred CCcEEEEECCCCCcHH
Confidence 3479999999999999
No 353
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=72.36 E-value=1.5 Score=43.78 Aligned_cols=14 Identities=36% Similarity=0.691 Sum_probs=12.9
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
+.|+|+|.||+|||
T Consensus 1 ~~ia~~gKGGVGKT 14 (275)
T TIGR01287 1 RQIAIYGKGGIGKS 14 (275)
T ss_pred CeeEEeCCCcCcHH
Confidence 47899999999999
No 354
>PF13479 AAA_24: AAA domain
Probab=72.30 E-value=9.6 Score=36.40 Aligned_cols=29 Identities=14% Similarity=0.131 Sum_probs=23.7
Q ss_pred eEEEEEccCccCCC--CCCcceEEEEEEcCc
Q 039519 98 GIIGLYGMGGLLGA--PNDFDVVIWMVVSKD 126 (647)
Q Consensus 98 ~vi~I~G~gGiGKT--~~~F~~~~wv~~s~~ 126 (647)
-.+.|+|.+|+||| ...|+..+++.....
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~~k~l~id~E~g 34 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASLPKPLFIDTENG 34 (213)
T ss_pred eEEEEECCCCCCHHHHHHhCCCeEEEEeCCC
Confidence 35789999999999 666788888887655
No 355
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=72.18 E-value=24 Score=34.30 Aligned_cols=84 Identities=19% Similarity=0.246 Sum_probs=51.0
Q ss_pred CCceEEEEEccCccCCC------CCCc--ceEEEEEE-cCccCHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHh-c
Q 039519 95 EQVGIIGLYGMGGLLGA------PNDF--DVVIWMVV-SKDLQLEKIQERIGRRIGFLDESWKNGSLEDKASDIFRIL-S 164 (647)
Q Consensus 95 ~~~~vi~I~G~gGiGKT------~~~F--~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~ 164 (647)
++-+++.++|--|.||| ...| +.++=|.+ .+..+...+...|...+..+....-..-.++..+.+.+.. +
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~ 128 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKK 128 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHh
Confidence 55679999999999999 2223 22332333 4456778888888888876321111112333334444444 4
Q ss_pred cCC-eeEEEecCCCc
Q 039519 165 KKK-LLLLLDDIWER 178 (647)
Q Consensus 165 ~~r-~LlVlDdv~~~ 178 (647)
++| ..+++||..+.
T Consensus 129 g~r~v~l~vdEah~L 143 (269)
T COG3267 129 GKRPVVLMVDEAHDL 143 (269)
T ss_pred CCCCeEEeehhHhhh
Confidence 567 89999999753
No 356
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=71.69 E-value=5.4 Score=42.76 Aligned_cols=83 Identities=8% Similarity=0.137 Sum_probs=47.6
Q ss_pred CceEEEEEccCccCCC---------CCCcceE-EEEEEcCcc-CHHHHHHHHHHHhCCCC-----cCCCCCCHHH-----
Q 039519 96 QVGIIGLYGMGGLLGA---------PNDFDVV-IWMVVSKDL-QLEKIQERIGRRIGFLD-----ESWKNGSLED----- 154 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT---------~~~F~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~~----- 154 (647)
.-.-++|.|-.|+||| ...-+.+ +++-+++.. .+.++.+.+...=.... ...+......
T Consensus 140 rGQR~~I~g~~g~GKt~Lal~~I~~q~~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ap~ 219 (485)
T CHL00059 140 RGQRELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPY 219 (485)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHhcccCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHHHH
Confidence 3457899999999999 3334544 677777653 56677776665421110 0001111111
Q ss_pred HHHHHHHHh--ccCCeeEEEecCCCc
Q 039519 155 KASDIFRIL--SKKKLLLLLDDIWER 178 (647)
Q Consensus 155 ~~~~l~~~l--~~~r~LlVlDdv~~~ 178 (647)
..-.+.+++ +++++|+|+||+-.-
T Consensus 220 ~a~aiAEyfr~~G~~VLlv~DdlTr~ 245 (485)
T CHL00059 220 TGAALAEYFMYRGRHTLIIYDDLSKQ 245 (485)
T ss_pred HHhhHHHHHHHcCCCEEEEEcChhHH
Confidence 012233444 479999999999653
No 357
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=71.57 E-value=4.5 Score=37.64 Aligned_cols=49 Identities=16% Similarity=0.136 Sum_probs=29.1
Q ss_pred HHHHHHHhcc-CCeeEEEecCCCccc-----cccccCCCCCCCCCcEEEEecCch
Q 039519 156 ASDIFRILSK-KKLLLLLDDIWERVD-----LTKVGVPFPDPENKSRIDFTTRFL 204 (647)
Q Consensus 156 ~~~l~~~l~~-~r~LlVlDdv~~~~~-----~~~l~~~~~~~~~gs~IivTTR~~ 204 (647)
.+..++.+.. +-=|||||.+...-. .+.+...+.....+..||+|-|+.
T Consensus 104 ~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 104 WEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 3444555544 455999999964311 223333333445667899999974
No 358
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=71.44 E-value=2 Score=38.87 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=12.2
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
.|+|.|.||+|||
T Consensus 2 ~I~ITGTPGvGKT 14 (180)
T COG1936 2 LIAITGTPGVGKT 14 (180)
T ss_pred eEEEeCCCCCchH
Confidence 5899999999999
No 359
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=71.28 E-value=18 Score=38.81 Aligned_cols=82 Identities=15% Similarity=0.187 Sum_probs=49.2
Q ss_pred CceEEEEEccCccCCC-----------CCCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCCc----CCCCCCHH------
Q 039519 96 QVGIIGLYGMGGLLGA-----------PNDFDVVIWMVVSKDL-QLEKIQERIGRRIGFLDE----SWKNGSLE------ 153 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT-----------~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~------ 153 (647)
.-.-++|+|-+|+||| .++=+.++++-+++.. .+.++.+.+...=..... ...+....
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 3457899999999999 2221356777776654 467777777654221100 00111111
Q ss_pred HHHHHHHHHh---ccCCeeEEEecCCC
Q 039519 154 DKASDIFRIL---SKKKLLLLLDDIWE 177 (647)
Q Consensus 154 ~~~~~l~~~l---~~~r~LlVlDdv~~ 177 (647)
...-.+.+++ +++++|+++||+-.
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchHH
Confidence 1233456666 57999999999965
No 360
>PRK06936 type III secretion system ATPase; Provisional
Probab=71.26 E-value=6.8 Score=41.58 Aligned_cols=82 Identities=16% Similarity=0.257 Sum_probs=46.7
Q ss_pred CceEEEEEccCccCCC--------CCCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCCc----CCCCCCHHHH------H
Q 039519 96 QVGIIGLYGMGGLLGA--------PNDFDVVIWMVVSKDL-QLEKIQERIGRRIGFLDE----SWKNGSLEDK------A 156 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT--------~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~~------~ 156 (647)
.-..++|+|..|+||| ...-+.++.+-+++.. .+.++.+..+..-+.... ...+...... .
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~a 240 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVA 240 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCCCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHHH
Confidence 4568999999999999 3333566677676654 455655554332111100 0011111111 2
Q ss_pred HHHHHHh--ccCCeeEEEecCCC
Q 039519 157 SDIFRIL--SKKKLLLLLDDIWE 177 (647)
Q Consensus 157 ~~l~~~l--~~~r~LlVlDdv~~ 177 (647)
-.+.+++ +++++|+++||+-.
T Consensus 241 ~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 241 TSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHcCCCEEEeccchhH
Confidence 2344444 58999999999965
No 361
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=71.24 E-value=4.1 Score=39.15 Aligned_cols=45 Identities=13% Similarity=0.191 Sum_probs=27.4
Q ss_pred cCCeeEEEecCCCccc-------cccccCCCCCCCCCcEEEEecCchHHhhhc
Q 039519 165 KKKLLLLLDDIWERVD-------LTKVGVPFPDPENKSRIDFTTRFLEICSAM 210 (647)
Q Consensus 165 ~~r~LlVlDdv~~~~~-------~~~l~~~~~~~~~gs~IivTTR~~~v~~~~ 210 (647)
+++-|+++|..-.... ...+...+... .++.+|++|...+++...
T Consensus 109 ~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 109 TSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred CCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 5789999999743211 11122222222 478899999998886543
No 362
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=71.06 E-value=8.3 Score=44.46 Aligned_cols=123 Identities=12% Similarity=0.110 Sum_probs=69.2
Q ss_pred hHHHHHHHHHhhhCCceEEEEEccCccCCC--------CCCcceEEEEEEcCc--cCHHHHHHHHHHHhCCCCc------
Q 039519 82 ESTFDKVRRCLREEQVGIIGLYGMGGLLGA--------PNDFDVVIWMVVSKD--LQLEKIQERIGRRIGFLDE------ 145 (647)
Q Consensus 82 ~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT--------~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~------ 145 (647)
.+...+|.+.+.. ..|+.|.|..|.||| ...|...--|-+.++ -....+.+.++++++...+
T Consensus 52 ~~~~~~i~~ai~~--~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~ 129 (845)
T COG1643 52 TAVRDEILKAIEQ--NQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYS 129 (845)
T ss_pred HHHHHHHHHHHHh--CCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEE
Confidence 3456677777754 468999999999999 222222122334444 3467788888888876421
Q ss_pred -----------CCCCCCHHHHHHHHH-HHhccCCeeEEEecCCCccc----cccc-cCCCCCCCCCcEEEEecCchHH
Q 039519 146 -----------SWKNGSLEDKASDIF-RILSKKKLLLLLDDIWERVD----LTKV-GVPFPDPENKSRIDFTTRFLEI 206 (647)
Q Consensus 146 -----------~~~~~~~~~~~~~l~-~~l~~~r~LlVlDdv~~~~~----~~~l-~~~~~~~~~gs~IivTTR~~~v 206 (647)
..+-.+...+.++++ +.+-.+=-.||+|.+.+... +-.+ ...+......-||||+|=.-+.
T Consensus 130 iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~ 207 (845)
T COG1643 130 IRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDA 207 (845)
T ss_pred EEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCH
Confidence 011233444444444 33334555789999987522 1111 1111112223689999975443
No 363
>PRK09099 type III secretion system ATPase; Provisional
Probab=70.61 E-value=9.6 Score=40.64 Aligned_cols=83 Identities=17% Similarity=0.220 Sum_probs=45.4
Q ss_pred CceEEEEEccCccCCC--------CCCcc-eEEEEEEcCccCHHHHHHHHHHHhCCCCc-----CCCCCCH-----HHHH
Q 039519 96 QVGIIGLYGMGGLLGA--------PNDFD-VVIWMVVSKDLQLEKIQERIGRRIGFLDE-----SWKNGSL-----EDKA 156 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT--------~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~-----~~~~ 156 (647)
.-..++|.|..|+||| ...-+ .+++..-.+...+.++.+.+...-+.... ..+.... ....
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~a 241 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVA 241 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHHH
Confidence 4568999999999999 11223 34444433444566666666544221100 0011111 1112
Q ss_pred HHHHHHh--ccCCeeEEEecCCCc
Q 039519 157 SDIFRIL--SKKKLLLLLDDIWER 178 (647)
Q Consensus 157 ~~l~~~l--~~~r~LlVlDdv~~~ 178 (647)
-.+.+++ +++.+|+++||+-..
T Consensus 242 ~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 242 TAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHcCCCEEEeccchhHH
Confidence 2344445 479999999999653
No 364
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=70.59 E-value=5 Score=44.96 Aligned_cols=64 Identities=8% Similarity=0.154 Sum_probs=46.5
Q ss_pred CCCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC-----------CCCcceEEEEEEcCccCHHHHHHHHHHHhC
Q 039519 75 CEPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA-----------PNDFDVVIWMVVSKDLQLEKIQERIGRRIG 141 (647)
Q Consensus 75 ~~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT-----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 141 (647)
.+.++|.++.++.+...+... +-+.++|.+|+||| ...++..+|+.-+ ..+...+++.++.+++
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~np-~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPNP-EDPNNPKIRTVPAGKG 104 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeCC-CcchHHHHHHHHHhcC
Confidence 356789988888887766654 36888999999999 3445777886653 3466777777776654
No 365
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=70.35 E-value=7.1 Score=43.75 Aligned_cols=66 Identities=11% Similarity=0.170 Sum_probs=41.1
Q ss_pred CCCCCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC-----------CCCcceEEEEEEcCccCHHHHHHHHHHHhC
Q 039519 73 RPCEPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA-----------PNDFDVVIWMVVSKDLQLEKIQERIGRRIG 141 (647)
Q Consensus 73 ~~~~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT-----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 141 (647)
...+.++|.++.++.+...+.... -+.++|++|+||| ...|...+.+.-+ ..+...+++.++..++
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~-~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNP-EDPNMPRIVEVPAGEG 91 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCC-CCCchHHHHHHHHhhc
Confidence 344667999988887777776543 4448999999999 2233333322222 2344556666666654
No 366
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=70.25 E-value=4.3 Score=43.84 Aligned_cols=15 Identities=27% Similarity=0.233 Sum_probs=13.3
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
...+.|+|.+|+|||
T Consensus 148 ~~~l~l~G~~G~GKT 162 (450)
T PRK00149 148 YNPLFIYGGVGLGKT 162 (450)
T ss_pred CCeEEEECCCCCCHH
Confidence 356889999999999
No 367
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=70.19 E-value=9.3 Score=42.01 Aligned_cols=110 Identities=9% Similarity=0.074 Sum_probs=58.8
Q ss_pred CceEEEEEccCccCCC--------CCCcceEEEEEEcCccCH--HHHHHHHHHHhCCCCcC-------CC----------
Q 039519 96 QVGIIGLYGMGGLLGA--------PNDFDVVIWMVVSKDLQL--EKIQERIGRRIGFLDES-------WK---------- 148 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT--------~~~F~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~-------~~---------- 148 (647)
...||.|+|-.|+||| .+.|..---|-+.++..+ -.+.+.+...++..-+. +.
T Consensus 370 ~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T~Ik 449 (1042)
T KOG0924|consen 370 ENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDTKIK 449 (1042)
T ss_pred hCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCceeEE
Confidence 3469999999999999 345543334455555443 45677777777543110 00
Q ss_pred -CCCHHHHHHHHHHHhccCCeeEEEecCCCccc----cccc-cCCCCCCCCCcEEEEecCchHH
Q 039519 149 -NGSLEDKASDIFRILSKKKLLLLLDDIWERVD----LTKV-GVPFPDPENKSRIDFTTRFLEI 206 (647)
Q Consensus 149 -~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~----~~~l-~~~~~~~~~gs~IivTTR~~~v 206 (647)
..+-.-+.+.+.+..-.|--.||+|.+.+... +--+ +..+. ....-++||||-..+.
T Consensus 450 ymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~la-rRrdlKliVtSATm~a 512 (1042)
T KOG0924|consen 450 YMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLA-RRRDLKLIVTSATMDA 512 (1042)
T ss_pred EeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHH-hhccceEEEeeccccH
Confidence 01122222333333334556888999876532 1111 11111 1235689999976544
No 368
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=70.17 E-value=6 Score=34.00 Aligned_cols=13 Identities=15% Similarity=-0.169 Sum_probs=11.6
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
.+.|.|..|.|||
T Consensus 2 ~~~i~~~~G~GKT 14 (144)
T cd00046 2 DVLLAAPTGSGKT 14 (144)
T ss_pred CEEEECCCCCchh
Confidence 4678999999999
No 369
>PRK04040 adenylate kinase; Provisional
Probab=70.02 E-value=2.2 Score=39.91 Aligned_cols=14 Identities=14% Similarity=0.283 Sum_probs=13.2
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
.+|+|+|++|+|||
T Consensus 3 ~~i~v~G~pG~GKt 16 (188)
T PRK04040 3 KVVVVTGVPGVGKT 16 (188)
T ss_pred eEEEEEeCCCCCHH
Confidence 58999999999999
No 370
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=69.89 E-value=2 Score=42.98 Aligned_cols=14 Identities=36% Similarity=0.691 Sum_probs=12.9
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
++|+|+|.||+|||
T Consensus 2 ~~iav~gKGGVGKT 15 (273)
T PRK13232 2 RQIAIYGKGGIGKS 15 (273)
T ss_pred CEEEEECCCCCcHH
Confidence 58889999999999
No 371
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=69.88 E-value=15 Score=42.42 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=25.8
Q ss_pred CCcccchHHHHHHHHHhhh-------------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE-------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~-------------~~~~vi~I~G~gGiGKT 111 (647)
..+.|.+..++++.+.+.- ...+-|.++|.+|+|||
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT 501 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKT 501 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHH
Confidence 3457888888877776531 12345788999999999
No 372
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=69.78 E-value=15 Score=39.06 Aligned_cols=84 Identities=17% Similarity=0.181 Sum_probs=43.6
Q ss_pred CCceEEEEEccCccCCC--------CCCcceEEEEEEcC-ccCHHHHHHHHHHHhCCCC---------c-CCCCCCHHHH
Q 039519 95 EQVGIIGLYGMGGLLGA--------PNDFDVVIWMVVSK-DLQLEKIQERIGRRIGFLD---------E-SWKNGSLEDK 155 (647)
Q Consensus 95 ~~~~vi~I~G~gGiGKT--------~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~---------~-~~~~~~~~~~ 155 (647)
..-..++|+|..|+||| ....+..+...+.. ..++.++....+..-+... . ........+.
T Consensus 153 ~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a~e~ 232 (434)
T PRK07196 153 GKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATEL 232 (434)
T ss_pred ecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHHHHH
Confidence 34568999999999999 11223333333332 2234444444443322110 0 0011112223
Q ss_pred HHHHHHHh--ccCCeeEEEecCCCc
Q 039519 156 ASDIFRIL--SKKKLLLLLDDIWER 178 (647)
Q Consensus 156 ~~~l~~~l--~~~r~LlVlDdv~~~ 178 (647)
...+.+++ +++++|+++||+-.-
T Consensus 233 a~~iAEyfr~~g~~Vll~~Dsltr~ 257 (434)
T PRK07196 233 CHAIATYYRDKGHDVLLLVDSLTRY 257 (434)
T ss_pred HHHHHHHhhhccCCEEEeecchhHH
Confidence 33444444 479999999999653
No 373
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=69.77 E-value=2.5 Score=40.45 Aligned_cols=47 Identities=17% Similarity=0.230 Sum_probs=28.4
Q ss_pred ccCCeeEEEecCCCcccc-------ccccCCCCCC-CCCcEEEEecCchHHhhhc
Q 039519 164 SKKKLLLLLDDIWERVDL-------TKVGVPFPDP-ENKSRIDFTTRFLEICSAM 210 (647)
Q Consensus 164 ~~~r~LlVlDdv~~~~~~-------~~l~~~~~~~-~~gs~IivTTR~~~v~~~~ 210 (647)
...+-|++||..-.-.+. ..+...+... ..+..+|+||...+++...
T Consensus 106 ~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 106 ATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred CCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 367899999999764221 1122222222 2245799999988886554
No 374
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=69.64 E-value=10 Score=34.98 Aligned_cols=24 Identities=13% Similarity=-0.114 Sum_probs=16.8
Q ss_pred HHHHHhhhCCceEEEEEccCccCCC
Q 039519 87 KVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 87 ~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
++...+.... +.+.|.|..|.|||
T Consensus 15 ~~~~~~~~~~-~~~~i~~~~GsGKT 38 (201)
T smart00487 15 EAIEALLSGL-RDVILAAPTGSGKT 38 (201)
T ss_pred HHHHHHHcCC-CcEEEECCCCCchh
Confidence 3444443322 68889999999999
No 375
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=69.49 E-value=21 Score=38.95 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=14.5
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+|+|+|.+|+|||
T Consensus 349 ~G~vIaLVGPtGvGKT 364 (559)
T PRK12727 349 RGGVIALVGPTGAGKT 364 (559)
T ss_pred CCCEEEEECCCCCCHH
Confidence 4579999999999999
No 376
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=69.37 E-value=21 Score=34.44 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=22.4
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCc
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKD 126 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~ 126 (647)
.-.++.|.|.+|.||| ...-..++|++...+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 4578999999999999 122246788876443
No 377
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=69.36 E-value=3 Score=39.68 Aligned_cols=22 Identities=9% Similarity=0.095 Sum_probs=18.8
Q ss_pred HHhhhCCceEEEEEccCccCCC
Q 039519 90 RCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 90 ~~L~~~~~~vi~I~G~gGiGKT 111 (647)
+.+...++++|+++|..|+|||
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKT 36 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKT 36 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHH
Confidence 3455578999999999999999
No 378
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=69.35 E-value=8.7 Score=35.20 Aligned_cols=76 Identities=13% Similarity=0.132 Sum_probs=39.5
Q ss_pred EEEEEccCccCCC------CCCcc-eEEEEEEcCccCHHHHHHHHHHHhCCCCcCCCC-CCHHHHHHHHHHHhccCCeeE
Q 039519 99 IIGLYGMGGLLGA------PNDFD-VVIWMVVSKDLQLEKIQERIGRRIGFLDESWKN-GSLEDKASDIFRILSKKKLLL 170 (647)
Q Consensus 99 vi~I~G~gGiGKT------~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~l~~~l~~~r~Ll 170 (647)
+|.|.|.+|+||| ...+. ..+++.-...++ .+..+.|..+.......|.. ....++.+.+.....+ .-++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~-~~~V 80 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP-GRCV 80 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC-CCEE
Confidence 6889999999999 22222 234444444433 35566665554433322321 1222344444443333 2368
Q ss_pred EEecCC
Q 039519 171 LLDDIW 176 (647)
Q Consensus 171 VlDdv~ 176 (647)
++|.+.
T Consensus 81 lID~Lt 86 (170)
T PRK05800 81 LVDCLT 86 (170)
T ss_pred EehhHH
Confidence 888874
No 379
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=69.31 E-value=11 Score=45.76 Aligned_cols=59 Identities=10% Similarity=0.112 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhhhCCceEEEEEccCccCCC--------CCCcceEEEEEEcCcc--CHHHHHHHHHHHhCC
Q 039519 82 ESTFDKVRRCLREEQVGIIGLYGMGGLLGA--------PNDFDVVIWMVVSKDL--QLEKIQERIGRRIGF 142 (647)
Q Consensus 82 ~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT--------~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~ 142 (647)
.+..++|.+.+.+. .|+.|+|..|+||| .........|-+.++. ....+...++..++.
T Consensus 69 ~~~~~~Il~~l~~~--~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~ 137 (1283)
T TIGR01967 69 SAKREDIAEAIAEN--QVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGT 137 (1283)
T ss_pred HHHHHHHHHHHHhC--ceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCC
Confidence 44567777777654 48999999999999 1111112234455554 346667777777754
No 380
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=69.29 E-value=4.1 Score=38.40 Aligned_cols=26 Identities=15% Similarity=0.072 Sum_probs=18.9
Q ss_pred HHHHHHhhhCCceEEEEEccCccCCC
Q 039519 86 DKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 86 ~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
.+....+...+-+++.|.|.+|.|||
T Consensus 7 ~~a~~~~l~~~~~~~~l~G~aGtGKT 32 (196)
T PF13604_consen 7 REAVRAILTSGDRVSVLQGPAGTGKT 32 (196)
T ss_dssp HHHHHHHHHCTCSEEEEEESTTSTHH
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCHH
Confidence 34444444455578999999999999
No 381
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=69.01 E-value=14 Score=38.94 Aligned_cols=15 Identities=13% Similarity=0.036 Sum_probs=13.6
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..++.++|.+|+|||
T Consensus 223 ~~vi~lvGptGvGKT 237 (432)
T PRK12724 223 RKVVFFVGPTGSGKT 237 (432)
T ss_pred CeEEEEECCCCCCHH
Confidence 468999999999999
No 382
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=69.00 E-value=2.2 Score=42.82 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=13.0
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
++|+|+|.||+|||
T Consensus 2 ~~i~~~gKGGVGKT 15 (279)
T PRK13230 2 RKFCFYGKGGIGKS 15 (279)
T ss_pred cEEEEECCCCCcHH
Confidence 57899999999999
No 383
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=68.80 E-value=35 Score=35.86 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=27.8
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCccC--HHHHHHHHHHHhCCC
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQ--LEKIQERIGRRIGFL 143 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~ 143 (647)
...||-.+|.-|.||| +. .....-+...+.+. ..+=++.++.+++.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCChHHHHHHHHHHHHcCCc
Confidence 3678999999999999 22 23333333333333 334456666666543
No 384
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=68.80 E-value=4.2 Score=41.83 Aligned_cols=36 Identities=14% Similarity=0.106 Sum_probs=30.0
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
..+||.+..+..+.-.+.+.+..-|.|.|..|+|||
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKt 39 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKS 39 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHH
Confidence 567999999888877777765666779999999999
No 385
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=68.72 E-value=5 Score=45.96 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=29.0
Q ss_pred CCcccchHHHHHHHHHhhh--CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE--EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~--~~~~vi~I~G~gGiGKT 111 (647)
..++|+...+.++.+.+.. ..-.-|-|+|-.|+|||
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~ 413 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKE 413 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHH
Confidence 4589999999998877763 33457889999999999
No 386
>PRK13531 regulatory ATPase RavA; Provisional
Probab=68.67 E-value=3.4 Score=44.23 Aligned_cols=34 Identities=9% Similarity=-0.016 Sum_probs=28.6
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
..++||++.++.+...+..++ -|-|.|.+|+|||
T Consensus 20 ~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT 53 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKS 53 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--CEEEECCCChhHH
Confidence 458999999999988887653 5678999999999
No 387
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=68.64 E-value=4.4 Score=41.23 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=26.5
Q ss_pred ceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHH
Q 039519 97 VGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQER 135 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~ 135 (647)
.+++.+.|.||+||| ......++-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 478999999999998 222244777776665555555444
No 388
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=68.39 E-value=3.6 Score=38.99 Aligned_cols=72 Identities=19% Similarity=0.115 Sum_probs=37.2
Q ss_pred CceEEEEEccCccCCC------CCCcceEEEEEE-cC-ccCHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHhccCC
Q 039519 96 QVGIIGLYGMGGLLGA------PNDFDVVIWMVV-SK-DLQLEKIQERIGRRIGFLDESWKNGSLEDKASDIFRILSKKK 167 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT------~~~F~~~~wv~~-s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r 167 (647)
.+.+|||.|.+|+||| ...|... ++.+ ++ .|-...-..........+.+....-+.+-..+.|...+.+++
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~-~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE-KVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC-cceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 4579999999999999 4555532 3322 11 111011111111111111122234567777778888877777
Q ss_pred e
Q 039519 168 L 168 (647)
Q Consensus 168 ~ 168 (647)
+
T Consensus 86 v 86 (218)
T COG0572 86 V 86 (218)
T ss_pred c
Confidence 3
No 389
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=68.21 E-value=4.5 Score=40.08 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=29.7
Q ss_pred HHHHHHhhh--CCceEEEEEccCccCCC------------CCCcceEEEEEEcCccCHHHHH
Q 039519 86 DKVRRCLRE--EQVGIIGLYGMGGLLGA------------PNDFDVVIWMVVSKDLQLEKIQ 133 (647)
Q Consensus 86 ~~i~~~L~~--~~~~vi~I~G~gGiGKT------------~~~F~~~~wv~~s~~~~~~~~~ 133 (647)
.+++..+.. ++..+|||.|.||+||+ +.+==.++=|+-|.+++-..++
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 345555442 56779999999999998 2222234445556666544444
No 390
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=68.08 E-value=11 Score=40.12 Aligned_cols=114 Identities=16% Similarity=0.176 Sum_probs=57.8
Q ss_pred CceEEEEEccCccCCC-------CC-Ccc-eEEEEEEcCccCHHHHHHHHHHHhCCCCc----CCCCCC------HHHHH
Q 039519 96 QVGIIGLYGMGGLLGA-------PN-DFD-VVIWMVVSKDLQLEKIQERIGRRIGFLDE----SWKNGS------LEDKA 156 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT-------~~-~F~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~~~~~~------~~~~~ 156 (647)
.-..++|+|..|+||| .. .-+ .++.+.-.+...+.++.+..+..-+.... ...+.. ....+
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a 234 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLA 234 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHHH
Confidence 4568899999999999 11 112 33332222335666776665554321110 001111 11122
Q ss_pred HHHHHHh--ccCCeeEEEecCCCccc-ccccc---CCCCCCCCCcEEEEecCchHHhhhcc
Q 039519 157 SDIFRIL--SKKKLLLLLDDIWERVD-LTKVG---VPFPDPENKSRIDFTTRFLEICSAMQ 211 (647)
Q Consensus 157 ~~l~~~l--~~~r~LlVlDdv~~~~~-~~~l~---~~~~~~~~gs~IivTTR~~~v~~~~~ 211 (647)
..+.+++ +++.+|+++||+-.-.+ ...+. ...|. .|-...+.|.-..++...+
T Consensus 235 ~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~--~G~~~~~~s~l~~L~ERag 293 (432)
T PRK06793 235 TSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPI--GGKTLLMESYMKKLLERSG 293 (432)
T ss_pred HHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCC--CCeeeeeeccchhHHHHhc
Confidence 3344444 47999999999976422 12221 12222 2555666666666655433
No 391
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=68.03 E-value=13 Score=39.70 Aligned_cols=83 Identities=17% Similarity=0.257 Sum_probs=44.8
Q ss_pred CceEEEEEccCccCCC------CC--CcceEEEEEEcCc-cCHHHHHHHHHHHhCCCCc-----CCCCCCH-----HHHH
Q 039519 96 QVGIIGLYGMGGLLGA------PN--DFDVVIWMVVSKD-LQLEKIQERIGRRIGFLDE-----SWKNGSL-----EDKA 156 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT------~~--~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~-----~~~~~~~-----~~~~ 156 (647)
.-..++|+|..|+||| .. ..+.++...+... .++.++...+...-+.... ..+.... ....
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~~a 246 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYC 246 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHHHH
Confidence 4457999999999999 11 2233333344443 2456666665544222100 0011111 1112
Q ss_pred HHHHHHh--ccCCeeEEEecCCCc
Q 039519 157 SDIFRIL--SKKKLLLLLDDIWER 178 (647)
Q Consensus 157 ~~l~~~l--~~~r~LlVlDdv~~~ 178 (647)
-.+.+++ +++++|+++||+-.-
T Consensus 247 ~aiAEyfrd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 247 TRIAEYFRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHHHHHHHCCCCEEEEecchhHH
Confidence 2344454 579999999999653
No 392
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=67.98 E-value=5 Score=38.27 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=12.3
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
.|+|.|.||+|||
T Consensus 2 kIaI~GKGG~GKT 14 (255)
T COG3640 2 KIAITGKGGVGKT 14 (255)
T ss_pred eEEEecCCCccHH
Confidence 6899999999999
No 393
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=67.88 E-value=5 Score=40.88 Aligned_cols=32 Identities=13% Similarity=0.141 Sum_probs=26.8
Q ss_pred cchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 80 GLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 80 Gr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
+|..+..--.++|.++.+..|.+.|.+|.|||
T Consensus 228 prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKT 259 (436)
T COG1875 228 PRNAEQRVALDLLLDDDIDLVSLGGKAGTGKT 259 (436)
T ss_pred cccHHHHHHHHHhcCCCCCeEEeeccCCccHh
Confidence 45555555677888899999999999999999
No 394
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=67.87 E-value=3.2 Score=40.05 Aligned_cols=78 Identities=17% Similarity=0.202 Sum_probs=44.9
Q ss_pred CceEEEEEccCccCCC----------CCC-cceEEEEEEcCccCHHHHHHHHHHHhCCCC----------------cCC-
Q 039519 96 QVGIIGLYGMGGLLGA----------PND-FDVVIWMVVSKDLQLEKIQERIGRRIGFLD----------------ESW- 147 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----------------~~~- 147 (647)
.-+++.|.|.+|+||| ... =+.++||+..++. .++.+.+. .++.+. ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEeccccccc
Confidence 4579999999999999 122 2466788776553 44444432 332210 000
Q ss_pred -CCCCHHHHHHHHHHHhcc-CCeeEEEecCC
Q 039519 148 -KNGSLEDKASDIFRILSK-KKLLLLLDDIW 176 (647)
Q Consensus 148 -~~~~~~~~~~~l~~~l~~-~r~LlVlDdv~ 176 (647)
...+.++....+.+.++. +.-.+|+|.+.
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 034666777777776654 44677888763
No 395
>PTZ00185 ATPase alpha subunit; Provisional
Probab=67.85 E-value=23 Score=38.32 Aligned_cols=81 Identities=11% Similarity=0.066 Sum_probs=45.9
Q ss_pred CceEEEEEccCccCCC--------CC----------CcceEEEEEEcCccC-HHHHHHHHHHHhCCCCcCC-----CCCC
Q 039519 96 QVGIIGLYGMGGLLGA--------PN----------DFDVVIWMVVSKDLQ-LEKIQERIGRRIGFLDESW-----KNGS 151 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT--------~~----------~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~~~-----~~~~ 151 (647)
.-.-++|.|-.|+||| ++ .-..++++-+++... +.+ ..+.+..-+...... .+..
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~e-i~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVAR-IHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHH-HHHHHHhcCCccceEEEEECCCCC
Confidence 3457899999999999 11 335678888887754 344 333333333111110 1111
Q ss_pred HHH------HHHHHHHHh--ccCCeeEEEecCCC
Q 039519 152 LED------KASDIFRIL--SKKKLLLLLDDIWE 177 (647)
Q Consensus 152 ~~~------~~~~l~~~l--~~~r~LlVlDdv~~ 177 (647)
... ..-.+.+++ +++.+|+|+||+-+
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 111 122344444 57999999999965
No 396
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=67.80 E-value=19 Score=37.58 Aligned_cols=79 Identities=11% Similarity=0.056 Sum_probs=43.2
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCccC--HHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHh
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQ--LEKIQERIGRRIGFLDESWKNGSLEDKASDIFRIL 163 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 163 (647)
+.++++++|..|+||| ...-..+.+|+.. ++. ..+-++..+..++.... ...+..+....+...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaD-tyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTD-TFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC-ccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHHHH
Confidence 4679999999999999 1111245566553 332 23334444555543221 2345555554444332
Q ss_pred -ccCCeeEEEecCCC
Q 039519 164 -SKKKLLLLLDDIWE 177 (647)
Q Consensus 164 -~~~r~LlVlDdv~~ 177 (647)
.+..=+|++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 13456777787754
No 397
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=67.63 E-value=4.1 Score=24.21 Aligned_cols=16 Identities=44% Similarity=0.659 Sum_probs=9.6
Q ss_pred cCCCeeeecCCCCCcc
Q 039519 442 VSLEHLDLSSTAITHL 457 (647)
Q Consensus 442 ~~L~~L~L~~~~l~~l 457 (647)
.+|+.|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666666533
No 398
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=67.47 E-value=19 Score=35.26 Aligned_cols=116 Identities=15% Similarity=0.130 Sum_probs=61.5
Q ss_pred CceEEEEEccCccCCC---------CCCcceEEEEEEcC-----ccCHHHHHHHHHHHhCCCCcC---C-CCCCHHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA---------PNDFDVVIWMVVSK-----DLQLEKIQERIGRRIGFLDES---W-KNGSLEDKAS 157 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT---------~~~F~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~~~---~-~~~~~~~~~~ 157 (647)
...++||+|-.|.||| ..--.+.++..-.+ .....+-..+++..++...+. . ..-+-.++++
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR 117 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR 117 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh
Confidence 4569999999999999 22122333333111 122344556666666643321 0 1112233322
Q ss_pred -HHHHHhccCCeeEEEecCCCccc------cccccCCCCCCCCCcEEEEecCchHHhhhccc
Q 039519 158 -DIFRILSKKKLLLLLDDIWERVD------LTKVGVPFPDPENKSRIDFTTRFLEICSAMQA 212 (647)
Q Consensus 158 -~l~~~l~~~r~LlVlDdv~~~~~------~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~~ 212 (647)
.|.+.|.-+.=++|.|..-+.-+ ...+...+.. ..|-..+..|-+-.++..+..
T Consensus 118 i~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 118 IGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred HHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhhcc
Confidence 46667778899999998765322 1111111111 124556777777766665543
No 399
>PRK11823 DNA repair protein RadA; Provisional
Probab=67.41 E-value=10 Score=40.77 Aligned_cols=85 Identities=19% Similarity=0.254 Sum_probs=45.3
Q ss_pred HHHHHHhhhC--CceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcCC---CCC
Q 039519 86 DKVRRCLREE--QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDESW---KNG 150 (647)
Q Consensus 86 ~~i~~~L~~~--~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~ 150 (647)
.++-+.|..+ .-.++.|.|.+|+||| ...-..++|++..+. ...+... ++.++.+.+.. ...
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~ 143 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAET 143 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCC
Confidence 3444444432 3568999999999999 112235678776543 3333322 44554322111 123
Q ss_pred CHHHHHHHHHHHhccCCeeEEEecCC
Q 039519 151 SLEDKASDIFRILSKKKLLLLLDDIW 176 (647)
Q Consensus 151 ~~~~~~~~l~~~l~~~r~LlVlDdv~ 176 (647)
+.++..+.+.+ .+.-++|+|.+.
T Consensus 144 ~l~~i~~~i~~---~~~~lVVIDSIq 166 (446)
T PRK11823 144 NLEAILATIEE---EKPDLVVIDSIQ 166 (446)
T ss_pred CHHHHHHHHHh---hCCCEEEEechh
Confidence 44444443332 355578888874
No 400
>PRK08233 hypothetical protein; Provisional
Probab=67.36 E-value=2.7 Score=38.78 Aligned_cols=15 Identities=20% Similarity=0.140 Sum_probs=13.8
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+|+|.|.+|+|||
T Consensus 3 ~~iI~I~G~~GsGKt 17 (182)
T PRK08233 3 TKIITIAAVSGGGKT 17 (182)
T ss_pred ceEEEEECCCCCCHH
Confidence 468999999999999
No 401
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=67.32 E-value=4.7 Score=39.28 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=19.3
Q ss_pred HHHHHHHHhhh--CCceEEEEEccCccCCC
Q 039519 84 TFDKVRRCLRE--EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 84 ~~~~i~~~L~~--~~~~vi~I~G~gGiGKT 111 (647)
...++.+.+.. ++..+|||.|.||+||+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKS 43 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKS 43 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHH
Confidence 34455555543 46789999999999998
No 402
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=66.91 E-value=2.9 Score=38.82 Aligned_cols=16 Identities=25% Similarity=0.125 Sum_probs=14.5
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
++.+|.|.|.+|+|||
T Consensus 2 ~~~ii~i~G~~GsGKs 17 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKG 17 (188)
T ss_pred CCcEEEEECCCCCCHH
Confidence 4578999999999999
No 403
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=66.83 E-value=2.4 Score=42.33 Aligned_cols=14 Identities=29% Similarity=0.665 Sum_probs=13.0
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
++|+|.|.||+|||
T Consensus 2 ~~iav~~KGGVGKT 15 (274)
T PRK13235 2 RKVAIYGKGGIGKS 15 (274)
T ss_pred CEEEEeCCCCccHH
Confidence 58999999999999
No 404
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=66.82 E-value=2.3 Score=36.55 Aligned_cols=12 Identities=33% Similarity=0.517 Sum_probs=11.4
Q ss_pred EEEEccCccCCC
Q 039519 100 IGLYGMGGLLGA 111 (647)
Q Consensus 100 i~I~G~gGiGKT 111 (647)
|+|.|.+|+|||
T Consensus 1 I~i~G~~GsGKt 12 (129)
T PF13238_consen 1 IGISGIPGSGKT 12 (129)
T ss_dssp EEEEESTTSSHH
T ss_pred CEEECCCCCCHH
Confidence 789999999999
No 405
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=66.73 E-value=11 Score=40.17 Aligned_cols=82 Identities=15% Similarity=0.201 Sum_probs=50.9
Q ss_pred CceEEEEEccCccCCC---------CCC-----cc---------eEEEEEEcCccCHHHHHHHHHHHhCCCCcCC-----
Q 039519 96 QVGIIGLYGMGGLLGA---------PND-----FD---------VVIWMVVSKDLQLEKIQERIGRRIGFLDESW----- 147 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT---------~~~-----F~---------~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~----- 147 (647)
.-.-++|.|-+|+||| .+. .+ .++++-+++.....+...+.+..-+......
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 3457899999999999 221 33 6677788888777776666666654211100
Q ss_pred CCCCHH------HHHHHHHHHhc---cCCeeEEEecCCC
Q 039519 148 KNGSLE------DKASDIFRILS---KKKLLLLLDDIWE 177 (647)
Q Consensus 148 ~~~~~~------~~~~~l~~~l~---~~r~LlVlDdv~~ 177 (647)
.+.... ..+-.+.++++ ++++|+++||+-.
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 011111 11223556665 5999999999954
No 406
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=66.72 E-value=4.1 Score=42.15 Aligned_cols=63 Identities=17% Similarity=0.288 Sum_probs=37.5
Q ss_pred HHHHHHHHHhccCCeeEEEecCCCc-cccccc--cCCCC--CCCCCcEEEEecCchHHhhhcccceeE
Q 039519 154 DKASDIFRILSKKKLLLLLDDIWER-VDLTKV--GVPFP--DPENKSRIDFTTRFLEICSAMQAHEFL 216 (647)
Q Consensus 154 ~~~~~l~~~l~~~r~LlVlDdv~~~-~~~~~l--~~~~~--~~~~gs~IivTTR~~~v~~~~~~~~~~ 216 (647)
.-..+|.+.+..+.-+++.|....- +..-.. ..-+. ....|+..++.|+..++.+.+.++..+
T Consensus 513 KeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li 580 (593)
T COG2401 513 KERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLI 580 (593)
T ss_pred HHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeE
Confidence 3345777888888888888887542 111111 11111 012477788888888888877666543
No 407
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=66.40 E-value=10 Score=40.86 Aligned_cols=82 Identities=11% Similarity=0.060 Sum_probs=49.3
Q ss_pred CceEEEEEccCccCCC---------CCCcce-EEEEEEcCcc-CHHHHHHHHHHHhCCCC-----cCCCCCCHH-----H
Q 039519 96 QVGIIGLYGMGGLLGA---------PNDFDV-VIWMVVSKDL-QLEKIQERIGRRIGFLD-----ESWKNGSLE-----D 154 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT---------~~~F~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~-----~ 154 (647)
.-.-++|.|-.|+||| ...-+. ++++-+++.. .+.++.+.+...=.... ...+..... .
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~q~~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ap~ 240 (497)
T TIGR03324 161 RGQRELILGDRQTGKTAIAIDTILNQKGRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPY 240 (497)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHHhcCCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHHHH
Confidence 3457899999999999 334454 6777787764 46677777665422110 000111111 1
Q ss_pred HHHHHHHHh--ccCCeeEEEecCCC
Q 039519 155 KASDIFRIL--SKKKLLLLLDDIWE 177 (647)
Q Consensus 155 ~~~~l~~~l--~~~r~LlVlDdv~~ 177 (647)
....+.+++ +++++|+|+||+-.
T Consensus 241 ~a~aiAEyfrd~G~~VLlv~DdlTr 265 (497)
T TIGR03324 241 AATSIGEHFMEQGRDVLIVYDDLTQ 265 (497)
T ss_pred HHHHHHHHHHhCCCCEEEEEcChhH
Confidence 122344555 57999999999965
No 408
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=66.23 E-value=2.3 Score=32.20 Aligned_cols=13 Identities=31% Similarity=0.335 Sum_probs=11.9
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
+|+|.|.+|+|||
T Consensus 1 ~i~i~G~~gsGKs 13 (69)
T cd02019 1 IIAITGGSGSGKS 13 (69)
T ss_pred CEEEECCCCCCHH
Confidence 4789999999999
No 409
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=66.19 E-value=19 Score=35.74 Aligned_cols=41 Identities=12% Similarity=-0.026 Sum_probs=27.7
Q ss_pred ceEEEEEccCccCCC-----------CCCcceEEEEEEcCccCHHHHHHHHHHH
Q 039519 97 VGIIGLYGMGGLLGA-----------PNDFDVVIWMVVSKDLQLEKIQERIGRR 139 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT-----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 139 (647)
-.++.|.|.+|+||| ..+=..++|+++.. ...++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 458889999999999 22124678887755 345566665554
No 410
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=66.17 E-value=11 Score=40.34 Aligned_cols=83 Identities=10% Similarity=0.099 Sum_probs=48.3
Q ss_pred CceEEEEEccCccCCC--------CCCcc------eEEEEEEcCcc-CHHHHHHHHHHHhCCCC-----cCCCCCC----
Q 039519 96 QVGIIGLYGMGGLLGA--------PNDFD------VVIWMVVSKDL-QLEKIQERIGRRIGFLD-----ESWKNGS---- 151 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT--------~~~F~------~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~---- 151 (647)
.-.-++|.|-.|+||| ....+ .++.+-+++.. .+.++.+.+...=.... ...+...
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~ 219 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERI 219 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence 3457899999999999 22233 56677776654 46677777654321110 0001111
Q ss_pred -HHHHHHHHHHHhc---cCCeeEEEecCCCc
Q 039519 152 -LEDKASDIFRILS---KKKLLLLLDDIWER 178 (647)
Q Consensus 152 -~~~~~~~l~~~l~---~~r~LlVlDdv~~~ 178 (647)
.-...-.+.++++ ++++|+++||+-.-
T Consensus 220 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 220 VTPRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 1111334566665 68899999999653
No 411
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=66.13 E-value=18 Score=38.48 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=14.5
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+|.++|.+|+|||
T Consensus 99 ~~~vi~lvG~~GvGKT 114 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKT 114 (429)
T ss_pred CCeEEEEECCCCCCHH
Confidence 3679999999999999
No 412
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=66.12 E-value=15 Score=33.60 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=28.8
Q ss_pred HHHHHHHhccC-CeeEEEecCCCccc-----cccccCCCCCCCCCcEEEEecCch
Q 039519 156 ASDIFRILSKK-KLLLLLDDIWERVD-----LTKVGVPFPDPENKSRIDFTTRFL 204 (647)
Q Consensus 156 ~~~l~~~l~~~-r~LlVlDdv~~~~~-----~~~l~~~~~~~~~gs~IivTTR~~ 204 (647)
.+..++.+... -=|||||.+...-. .+.+...+.....+.-||+|-|+.
T Consensus 86 ~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 86 WQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 34445555444 45999999964211 222333333445667899999975
No 413
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=65.94 E-value=15 Score=39.11 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=39.5
Q ss_pred ceEEEEEccCccCCC----------C--CCcceEEEEEEcCccCHH--HHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHH
Q 039519 97 VGIIGLYGMGGLLGA----------P--NDFDVVIWMVVSKDLQLE--KIQERIGRRIGFLDESWKNGSLEDKASDIFRI 162 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT----------~--~~F~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 162 (647)
.+++.++|.+|+||| . ..-..+..|+.. ++... .-+....+.++.... ...+..+....+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D-~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD-TYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC-ccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-
Confidence 468999999999999 2 122345666543 23221 222333333443221 22334444444443
Q ss_pred hccCCeeEEEecCC
Q 039519 163 LSKKKLLLLLDDIW 176 (647)
Q Consensus 163 l~~~r~LlVlDdv~ 176 (647)
+. ..=+||+|..-
T Consensus 297 ~~-~~DlVlIDt~G 309 (424)
T PRK05703 297 LR-DCDVILIDTAG 309 (424)
T ss_pred hC-CCCEEEEeCCC
Confidence 23 35678889763
No 414
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=65.90 E-value=14 Score=39.24 Aligned_cols=36 Identities=19% Similarity=0.100 Sum_probs=26.5
Q ss_pred CCcccchHHHHHHHHHhhh-------C---------CceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE-------E---------QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~-------~---------~~~vi~I~G~gGiGKT 111 (647)
..+||.+..++.+...+.. . ..+-|.++|.+|+|||
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT 122 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKT 122 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHH
Confidence 4579999988877655421 0 1256889999999999
No 415
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=65.88 E-value=23 Score=38.55 Aligned_cols=83 Identities=10% Similarity=0.111 Sum_probs=47.8
Q ss_pred CceEEEEEccCccCCC---------CCCcceE-EEEEEcCcc-CHHHHHHHHHHHhCCCCc----CCCCCCHHHH-----
Q 039519 96 QVGIIGLYGMGGLLGA---------PNDFDVV-IWMVVSKDL-QLEKIQERIGRRIGFLDE----SWKNGSLEDK----- 155 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT---------~~~F~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~~----- 155 (647)
.-.-++|.|-.|+||| ...-+.+ +++-+++.. .+.++.+.+...=..... ...+......
T Consensus 161 rGQr~~Ifg~~g~GKt~lal~~i~~~~~~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~a~~ 240 (502)
T PRK09281 161 RGQRELIIGDRQTGKTAIAIDTIINQKGKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLAPY 240 (502)
T ss_pred cCcEEEeecCCCCCchHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHHHHHH
Confidence 3457899999999999 2344554 777777764 456666666544211100 0001111111
Q ss_pred -HHHHHHHh--ccCCeeEEEecCCCc
Q 039519 156 -ASDIFRIL--SKKKLLLLLDDIWER 178 (647)
Q Consensus 156 -~~~l~~~l--~~~r~LlVlDdv~~~ 178 (647)
.-.+.+++ +++++|+|+||+-.-
T Consensus 241 ~a~tiAEyfrd~G~~VLli~DdlTr~ 266 (502)
T PRK09281 241 AGCAMGEYFMDNGKDALIVYDDLSKQ 266 (502)
T ss_pred HHHHHHHHHHHcCCCEEEEecCchHH
Confidence 22233444 379999999999753
No 416
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=65.85 E-value=13 Score=39.75 Aligned_cols=83 Identities=14% Similarity=0.183 Sum_probs=49.1
Q ss_pred CceEEEEEccCccCCC-----------CCCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCCc----CCCCCCHHH-----
Q 039519 96 QVGIIGLYGMGGLLGA-----------PNDFDVVIWMVVSKDL-QLEKIQERIGRRIGFLDE----SWKNGSLED----- 154 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT-----------~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~----- 154 (647)
.-.-++|.|-+|+||| .++=..++++-+++.. .+.++++++...=..... ...+.....
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 4457899999999999 2222366777776653 467777777543111100 001111111
Q ss_pred -HHHHHHHHh---ccCCeeEEEecCCCc
Q 039519 155 -KASDIFRIL---SKKKLLLLLDDIWER 178 (647)
Q Consensus 155 -~~~~l~~~l---~~~r~LlVlDdv~~~ 178 (647)
..-.+.+++ +++++|+++||+-.-
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 233456666 468999999999653
No 417
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=65.82 E-value=25 Score=38.10 Aligned_cols=83 Identities=11% Similarity=0.123 Sum_probs=48.4
Q ss_pred CceEEEEEccCccCCC---------CCCcceE-EEEEEcCcc-CHHHHHHHHHHHhCCCC-----cCCCCCCHHH-----
Q 039519 96 QVGIIGLYGMGGLLGA---------PNDFDVV-IWMVVSKDL-QLEKIQERIGRRIGFLD-----ESWKNGSLED----- 154 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT---------~~~F~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~~----- 154 (647)
.-.-++|.|-.|+||| ...-+.+ +++-+++.. .+.++.+.+...=.... ...+......
T Consensus 161 rGQR~~I~g~~g~GKt~Lal~~i~~~~~~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~~ap~ 240 (502)
T PRK13343 161 RGQRELIIGDRQTGKTAIAIDAIINQKDSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLAPF 240 (502)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHhhcCCCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHHHHHH
Confidence 4457899999999999 3334544 777777764 46667766654421110 0001111111
Q ss_pred HHHHHHHHh--ccCCeeEEEecCCCc
Q 039519 155 KASDIFRIL--SKKKLLLLLDDIWER 178 (647)
Q Consensus 155 ~~~~l~~~l--~~~r~LlVlDdv~~~ 178 (647)
....+.+++ +++++|+|+||+-.-
T Consensus 241 ~a~aiAEyfrd~G~~VLlv~DdlTr~ 266 (502)
T PRK13343 241 AGCAIAEYFRDQGQDALIVYDDLSKH 266 (502)
T ss_pred HHHHHHHHHHhCCCCEEEEecchHHH
Confidence 122344555 579999999999753
No 418
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=65.74 E-value=14 Score=39.51 Aligned_cols=17 Identities=12% Similarity=0.257 Sum_probs=14.9
Q ss_pred CCceEEEEEccCccCCC
Q 039519 95 EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 95 ~~~~vi~I~G~gGiGKT 111 (647)
..-..++|+|..|+|||
T Consensus 156 ~~Gq~i~I~G~sG~GKS 172 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKS 172 (438)
T ss_pred cCCcEEEEECCCCCCHH
Confidence 45578999999999999
No 419
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=65.62 E-value=16 Score=38.90 Aligned_cols=83 Identities=17% Similarity=0.188 Sum_probs=44.1
Q ss_pred CCceEEEEEccCccCCC--------CCCcceEEEEEEcC-ccCHHHHHHHHHHHhCCCCc----CCCCCCHH------HH
Q 039519 95 EQVGIIGLYGMGGLLGA--------PNDFDVVIWMVVSK-DLQLEKIQERIGRRIGFLDE----SWKNGSLE------DK 155 (647)
Q Consensus 95 ~~~~vi~I~G~gGiGKT--------~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~----~~~~~~~~------~~ 155 (647)
.....++|.|..|+||| ....+....+.+.. ...+..+.++....-..... ........ ..
T Consensus 143 ~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~~~~ 222 (422)
T TIGR02546 143 GEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAAYT 222 (422)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHHHHH
Confidence 34568899999999999 22233333344433 34555565554433211100 00011111 12
Q ss_pred HHHHHHHh--ccCCeeEEEecCCC
Q 039519 156 ASDIFRIL--SKKKLLLLLDDIWE 177 (647)
Q Consensus 156 ~~~l~~~l--~~~r~LlVlDdv~~ 177 (647)
...+.+++ +++++|+++||+-.
T Consensus 223 a~~~AE~f~~~g~~Vl~~~Dsltr 246 (422)
T TIGR02546 223 ATAIAEYFRDQGKRVLLMMDSLTR 246 (422)
T ss_pred HHHHHHHHHHCCCcEEEEEeCchH
Confidence 22344454 46899999999964
No 420
>PRK00625 shikimate kinase; Provisional
Probab=65.52 E-value=2.6 Score=38.75 Aligned_cols=13 Identities=23% Similarity=0.105 Sum_probs=11.8
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
.|.++||+|+|||
T Consensus 2 ~I~LiG~pGsGKT 14 (173)
T PRK00625 2 QIFLCGLPTVGKT 14 (173)
T ss_pred EEEEECCCCCCHH
Confidence 3789999999999
No 421
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=65.43 E-value=2.7 Score=39.53 Aligned_cols=13 Identities=38% Similarity=0.498 Sum_probs=12.6
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
||||.|.+|+|||
T Consensus 1 IIgI~G~sgSGKT 13 (194)
T PF00485_consen 1 IIGIAGPSGSGKT 13 (194)
T ss_dssp EEEEEESTTSSHH
T ss_pred CEEEECCCCCCHH
Confidence 7999999999999
No 422
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=65.34 E-value=12 Score=36.31 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=25.4
Q ss_pred CCcccchHHHHH---HHHHhhhC------CceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDK---VRRCLREE------QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~---i~~~L~~~------~~~vi~I~G~gGiGKT 111 (647)
+.+||.++...+ |.+.|.+. ..+-|..+|.+|.|||
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKT 165 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKT 165 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHH
Confidence 345788776544 44555541 4678889999999999
No 423
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=65.32 E-value=21 Score=40.72 Aligned_cols=75 Identities=19% Similarity=0.225 Sum_probs=40.7
Q ss_pred ceEEEEEccCccCCC------CCCc------ceEEEEEEcCccC--HHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHH
Q 039519 97 VGIIGLYGMGGLLGA------PNDF------DVVIWMVVSKDLQ--LEKIQERIGRRIGFLDESWKNGSLEDKASDIFRI 162 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT------~~~F------~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 162 (647)
.+||+++|..|+||| ...| ..+..++. +++. ..+-++...+.++.... ...+..+....+. .
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~-Dt~RigA~eQL~~~a~~~gvpv~--~~~~~~~l~~al~-~ 260 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTT-DSFRIGALEQLRIYGRILGVPVH--AVKDAADLRFALA-A 260 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecC-cccchHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHHH-H
Confidence 469999999999999 1111 23444443 3343 33445555555554331 2234555544444 3
Q ss_pred hccCCeeEEEecCC
Q 039519 163 LSKKKLLLLLDDIW 176 (647)
Q Consensus 163 l~~~r~LlVlDdv~ 176 (647)
++++ =+|++|=.-
T Consensus 261 ~~~~-D~VLIDTAG 273 (767)
T PRK14723 261 LGDK-HLVLIDTVG 273 (767)
T ss_pred hcCC-CEEEEeCCC
Confidence 3444 366667665
No 424
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=65.20 E-value=2.8 Score=42.38 Aligned_cols=14 Identities=43% Similarity=0.714 Sum_probs=12.9
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
++|+|+|.||+|||
T Consensus 1 ~vIav~gKGGvGKT 14 (296)
T TIGR02016 1 RIIAIYGKGGSGKS 14 (296)
T ss_pred CEEEEECCCCCCHH
Confidence 58899999999999
No 425
>PRK05480 uridine/cytidine kinase; Provisional
Probab=65.04 E-value=3.4 Score=39.34 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=15.0
Q ss_pred CCceEEEEEccCccCCC
Q 039519 95 EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 95 ~~~~vi~I~G~gGiGKT 111 (647)
.+..+|+|.|.+|+|||
T Consensus 4 ~~~~iI~I~G~sGsGKT 20 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKT 20 (209)
T ss_pred CCCEEEEEECCCCCCHH
Confidence 35679999999999999
No 426
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=65.02 E-value=9.3 Score=41.17 Aligned_cols=92 Identities=12% Similarity=0.123 Sum_probs=46.3
Q ss_pred eEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHhccCC
Q 039519 98 GIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDESWKNGSLEDKASDIFRILSKKK 167 (647)
Q Consensus 98 ~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r 167 (647)
..+.|+|..|+||| .......-.+.+ +..++...+...+.... .....+++.++ ..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv----~~~~f~~~~~~~l~~~~---------~~~~~~~~~~~-~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM----SGDEFARKAVDILQKTH---------KEIEQFKNEIC-QN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE----EHHHHHHHHHHHHHHhh---------hHHHHHHHHhc-cC
Confidence 56889999999999 111111111222 23456666666554210 12233444444 34
Q ss_pred eeEEEecCCCcc---c-cccccCCCCC-CCCCcEEEEecCc
Q 039519 168 LLLLLDDIWERV---D-LTKVGVPFPD-PENKSRIDFTTRF 203 (647)
Q Consensus 168 ~LlVlDdv~~~~---~-~~~l~~~~~~-~~~gs~IivTTR~ 203 (647)
-+||+||+.... . .+.+...+.. ...|..||+|+..
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~ 248 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDK 248 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCC
Confidence 478889996432 1 1222211111 1234568888764
No 427
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=64.88 E-value=26 Score=38.47 Aligned_cols=66 Identities=12% Similarity=0.017 Sum_probs=34.4
Q ss_pred ceEEEEEccCccCCC-----CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHhccCCeeEE
Q 039519 97 VGIIGLYGMGGLLGA-----PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDESWKNGSLEDKASDIFRILSKKKLLLL 171 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT-----~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 171 (647)
..=|-+||++|.||| ...=...-|++|..+ +++... -..++......+++.=..-.+.|.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGP--------ELlNkY-------VGESErAVR~vFqRAR~saPCVIF 609 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGP--------ELLNKY-------VGESERAVRQVFQRARASAPCVIF 609 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEeecCH--------HHHHHH-------hhhHHHHHHHHHHHhhcCCCeEEE
Confidence 344678999999999 111123345555443 111111 111222222233333235789999
Q ss_pred EecCCC
Q 039519 172 LDDIWE 177 (647)
Q Consensus 172 lDdv~~ 177 (647)
||.++.
T Consensus 610 FDEiDa 615 (802)
T KOG0733|consen 610 FDEIDA 615 (802)
T ss_pred ecchhh
Confidence 999964
No 428
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=64.67 E-value=2.9 Score=36.84 Aligned_cols=13 Identities=31% Similarity=0.220 Sum_probs=12.1
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
+|.+.|++|+|||
T Consensus 1 lii~~G~pgsGKS 13 (143)
T PF13671_consen 1 LIILCGPPGSGKS 13 (143)
T ss_dssp EEEEEESTTSSHH
T ss_pred CEEEECCCCCCHH
Confidence 5789999999999
No 429
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=64.42 E-value=3.3 Score=41.41 Aligned_cols=14 Identities=36% Similarity=0.686 Sum_probs=13.0
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
++|+|.|.||+|||
T Consensus 3 ~vIav~~KGGVGKT 16 (275)
T PRK13233 3 RKIAIYGKGGIGKS 16 (275)
T ss_pred eEEEEEcCCCCcHH
Confidence 68899999999999
No 430
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=64.35 E-value=9.2 Score=37.92 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=18.0
Q ss_pred ccchHHHHHHH---HHhhhCCceEEEEEccCccCCC
Q 039519 79 VGLESTFDKVR---RCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 79 vGr~~~~~~i~---~~L~~~~~~vi~I~G~gGiGKT 111 (647)
|=.++.++.|. ..|...+ +-.-++|+||+||+
T Consensus 11 Vlf~~ai~hi~ri~RvL~~~~-Gh~LLvG~~GsGr~ 45 (268)
T PF12780_consen 11 VLFDEAIEHIARISRVLSQPR-GHALLVGVGGSGRQ 45 (268)
T ss_dssp ---HHHHHHHHHHHHHHCSTT-EEEEEECTTTSCHH
T ss_pred eeHHHHHHHHHHHHHHHcCCC-CCeEEecCCCccHH
Confidence 33444444443 3444443 44458999999998
No 431
>PRK06762 hypothetical protein; Provisional
Probab=64.27 E-value=3.3 Score=37.67 Aligned_cols=14 Identities=21% Similarity=0.159 Sum_probs=13.1
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
.+|.|.|++|+|||
T Consensus 3 ~li~i~G~~GsGKS 16 (166)
T PRK06762 3 TLIIIRGNSGSGKT 16 (166)
T ss_pred eEEEEECCCCCCHH
Confidence 58999999999999
No 432
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=64.20 E-value=8.1 Score=38.20 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=22.5
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCc
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKD 126 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~ 126 (647)
.-+++.|.|.+|+||| ...=..+++++...+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESP 75 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 4578999999999999 122246778887643
No 433
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=64.14 E-value=6.3 Score=43.48 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=30.0
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
+.++|.+..++.+...+......-|-|+|.+|+|||
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt 100 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKT 100 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHH
Confidence 457999999999988776655556789999999999
No 434
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=63.79 E-value=19 Score=34.12 Aligned_cols=45 Identities=20% Similarity=0.287 Sum_probs=28.1
Q ss_pred cCCeeEEEecCCCcc---c----cccccCCCCCCCCCcEEEEecCchHHhhhcc
Q 039519 165 KKKLLLLLDDIWERV---D----LTKVGVPFPDPENKSRIDFTTRFLEICSAMQ 211 (647)
Q Consensus 165 ~~r~LlVlDdv~~~~---~----~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~ 211 (647)
.++-|+++|..-... + ...+...+. ..|+.+|++|-..+++..+.
T Consensus 107 ~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 107 DGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAILG 158 (204)
T ss_pred CCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhh
Confidence 568899999984421 1 111111222 23778999999998876554
No 435
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=63.66 E-value=7.4 Score=36.80 Aligned_cols=45 Identities=22% Similarity=0.266 Sum_probs=26.9
Q ss_pred cCCeeEEEecCCCcccc-------ccccCCCCCCCCCcEEEEecCchHHhhhcc
Q 039519 165 KKKLLLLLDDIWERVDL-------TKVGVPFPDPENKSRIDFTTRFLEICSAMQ 211 (647)
Q Consensus 165 ~~r~LlVlDdv~~~~~~-------~~l~~~~~~~~~gs~IivTTR~~~v~~~~~ 211 (647)
..+-++++|..-..-+. ..+...+. ..++.+|++|.+.++.....
T Consensus 107 ~~~~llllDEp~~gld~~~~~~l~~~ll~~l~--~~~~~vi~~tH~~~~~~~~~ 158 (202)
T cd03243 107 TPRSLVLIDELGRGTSTAEGLAIAYAVLEHLL--EKGCRTLFATHFHELADLPE 158 (202)
T ss_pred cCCeEEEEecCCCCCCHHHHHHHHHHHHHHHH--hcCCeEEEECChHHHHHHhh
Confidence 57889999998543221 11111121 23667899998888866543
No 436
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=63.17 E-value=5.9 Score=34.76 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=24.6
Q ss_pred ccchHHHHHHHHHhhh--CCceEEEEEccCccCCC
Q 039519 79 VGLESTFDKVRRCLRE--EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 79 vGr~~~~~~i~~~L~~--~~~~vi~I~G~gGiGKT 111 (647)
||....++++.+.+.. .....|-|+|-.|+||+
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~ 35 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKS 35 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHH
Confidence 5777888888887764 44567789999999999
No 437
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=63.13 E-value=3.7 Score=39.03 Aligned_cols=16 Identities=31% Similarity=0.214 Sum_probs=14.4
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+|+|+|.+|+|||
T Consensus 5 ~g~vi~I~G~sGsGKS 20 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKT 20 (207)
T ss_pred CeEEEEEECCCCCCHH
Confidence 4579999999999999
No 438
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=63.07 E-value=3.3 Score=41.19 Aligned_cols=14 Identities=36% Similarity=0.691 Sum_probs=12.8
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
++|+|.|.||+|||
T Consensus 2 ~~iav~~KGGvGKT 15 (270)
T cd02040 2 RQIAIYGKGGIGKS 15 (270)
T ss_pred cEEEEEeCCcCCHH
Confidence 57888899999999
No 439
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=62.87 E-value=8 Score=39.53 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=31.7
Q ss_pred CCcccchHHHHHHHHHhhh------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~------~~~~vi~I~G~gGiGKT 111 (647)
..++|.++.++++++.+.. ..-+++-++|+.|.|||
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKS 102 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKS 102 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHH
Confidence 3689999999999999874 35689999999999999
No 440
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=62.77 E-value=17 Score=35.71 Aligned_cols=84 Identities=18% Similarity=0.193 Sum_probs=44.0
Q ss_pred HHHHHHHHhCCCC---cCCCCCCHHHHH-HHHHHHhccCCeeEEEecCCCccc-------cccccCCCCCCCCCcEEEEe
Q 039519 132 IQERIGRRIGFLD---ESWKNGSLEDKA-SDIFRILSKKKLLLLLDDIWERVD-------LTKVGVPFPDPENKSRIDFT 200 (647)
Q Consensus 132 ~~~~i~~~l~~~~---~~~~~~~~~~~~-~~l~~~l~~~r~LlVlDdv~~~~~-------~~~l~~~~~~~~~gs~IivT 200 (647)
+....++.++... ..+..-+-.+++ -.+.+.|.+..=+++||.--+--+ ++-+. .+. ...|..||++
T Consensus 118 ~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~-~l~-~~~~~tvv~v 195 (258)
T COG1120 118 IVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLR-DLN-REKGLTVVMV 195 (258)
T ss_pred HHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHH-HHH-HhcCCEEEEE
Confidence 4555555555422 122333333333 355666777777888887643211 22111 111 1246679999
Q ss_pred cCchHHhhhcccceeEec
Q 039519 201 TRFLEICSAMQAHEFLKV 218 (647)
Q Consensus 201 TR~~~v~~~~~~~~~~~~ 218 (647)
+-+-+.|...+. +.+-+
T Consensus 196 lHDlN~A~ryad-~~i~l 212 (258)
T COG1120 196 LHDLNLAARYAD-HLILL 212 (258)
T ss_pred ecCHHHHHHhCC-EEEEE
Confidence 999888776543 34444
No 441
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=62.61 E-value=35 Score=37.11 Aligned_cols=83 Identities=10% Similarity=0.119 Sum_probs=48.8
Q ss_pred CceEEEEEccCccCCC---------CCCcceE-EEEEEcCcc-CHHHHHHHHHHHhCCCC-----cCCCCCCHH-----H
Q 039519 96 QVGIIGLYGMGGLLGA---------PNDFDVV-IWMVVSKDL-QLEKIQERIGRRIGFLD-----ESWKNGSLE-----D 154 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT---------~~~F~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~-----~ 154 (647)
.-.-++|.|-.|+||| ....+.+ +++-+++.. .+.++.+.+...=.... ...+..... .
T Consensus 160 rGQr~~I~g~~g~GKt~Lal~~i~~~~~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~a~~ 239 (501)
T TIGR00962 160 RGQRELIIGDRQTGKTAVAIDTIINQKDSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQYLAPY 239 (501)
T ss_pred cCCEEEeecCCCCCccHHHHHHHHhhcCCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHHHHHH
Confidence 3457899999999999 3344554 777777754 46777777665421110 000111111 1
Q ss_pred HHHHHHHHh--ccCCeeEEEecCCCc
Q 039519 155 KASDIFRIL--SKKKLLLLLDDIWER 178 (647)
Q Consensus 155 ~~~~l~~~l--~~~r~LlVlDdv~~~ 178 (647)
....+.+++ +++++|+|+||+-.-
T Consensus 240 ~a~aiAEyfrd~G~~VLlv~Ddltr~ 265 (501)
T TIGR00962 240 TGCTMAEYFRDNGKHALIIYDDLSKH 265 (501)
T ss_pred HHHHHHHHHHHcCCCEEEEecchHHH
Confidence 122344444 479999999999753
No 442
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=62.58 E-value=38 Score=35.83 Aligned_cols=65 Identities=23% Similarity=0.220 Sum_probs=49.2
Q ss_pred cccchHHHHHHHHHhh---hCCceEEEEEccCccCCC-----------CCCcceEEEEEEcCcc-------CHHHHHHHH
Q 039519 78 TVGLESTFDKVRRCLR---EEQVGIIGLYGMGGLLGA-----------PNDFDVVIWMVVSKDL-------QLEKIQERI 136 (647)
Q Consensus 78 ~vGr~~~~~~i~~~L~---~~~~~vi~I~G~gGiGKT-----------~~~F~~~~wv~~s~~~-------~~~~~~~~i 136 (647)
.|||+.+++.|.+.|. +++..+-.|.|-=|.||| ...| .+..|.+|... ....+++.|
T Consensus 27 ~VGr~~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~~~~f-vvs~v~ls~e~~lh~~~g~~~~~Yr~l 105 (416)
T PF10923_consen 27 AVGREREIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFLRLIRERALEKGF-VVSEVDLSPERPLHGTGGQLEALYREL 105 (416)
T ss_pred eechHHHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHHHHHHHHHHHcCC-EEEEEecCCCcccccccccHHHHHHHH
Confidence 3999999999988876 456677799999999999 3344 45566665542 466789999
Q ss_pred HHHhCCC
Q 039519 137 GRRIGFL 143 (647)
Q Consensus 137 ~~~l~~~ 143 (647)
+..+.-.
T Consensus 106 ~~nL~t~ 112 (416)
T PF10923_consen 106 MRNLSTK 112 (416)
T ss_pred HHhcCCC
Confidence 9988754
No 443
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=62.49 E-value=5.6 Score=46.55 Aligned_cols=46 Identities=24% Similarity=0.239 Sum_probs=29.8
Q ss_pred HHHhccCCeeEEEecCCCccc------cccccCCCCCCCCCcEEEEecCchHH
Q 039519 160 FRILSKKKLLLLLDDIWERVD------LTKVGVPFPDPENKSRIDFTTRFLEI 206 (647)
Q Consensus 160 ~~~l~~~r~LlVlDdv~~~~~------~~~l~~~~~~~~~gs~IivTTR~~~v 206 (647)
.++++..++|+.+|.++.... ...+...+++. ..+.||+|+|....
T Consensus 299 ~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~-~~~~~iltcR~~~~ 350 (824)
T COG5635 299 QELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEY-PDAQVLLTCRPDTY 350 (824)
T ss_pred HHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhc-cCCeEEEEeccchh
Confidence 678899999999999886421 11122222222 46789999986443
No 444
>PHA02774 E1; Provisional
Probab=62.37 E-value=5.5 Score=43.50 Aligned_cols=28 Identities=11% Similarity=0.147 Sum_probs=19.9
Q ss_pred HHHHHHHHhhhC-CceEEEEEccCccCCC
Q 039519 84 TFDKVRRCLREE-QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 84 ~~~~i~~~L~~~-~~~vi~I~G~gGiGKT 111 (647)
-+..+..++... +..-+.|+|++|.|||
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS 448 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKS 448 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHH
Confidence 345555555442 3468999999999999
No 445
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=62.33 E-value=6.4 Score=40.95 Aligned_cols=15 Identities=27% Similarity=0.321 Sum_probs=14.5
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
-++|.++|+.|+|||
T Consensus 203 ~~vi~LVGPTGVGKT 217 (407)
T COG1419 203 KRVIALVGPTGVGKT 217 (407)
T ss_pred CcEEEEECCCCCcHH
Confidence 789999999999999
No 446
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=62.32 E-value=11 Score=40.01 Aligned_cols=82 Identities=17% Similarity=0.179 Sum_probs=41.1
Q ss_pred CceEEEEEccCccCCC--------CCCcceEEEEEEcCc-cCHHHHHHHHHHHhCCCCc----CCCCCCHHHH------H
Q 039519 96 QVGIIGLYGMGGLLGA--------PNDFDVVIWMVVSKD-LQLEKIQERIGRRIGFLDE----SWKNGSLEDK------A 156 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT--------~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~------~ 156 (647)
.-..++|+|..|+||| ..+-+.++...+... .++.++.+.+...-..... ...+...... .
T Consensus 174 ~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ad~~~~~r~~~~~~a 253 (455)
T PRK07960 174 RGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYA 253 (455)
T ss_pred CCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECCCCCHHHHHHHHHHH
Confidence 4568999999999999 112233333333322 2455555544322110000 0011111111 1
Q ss_pred HHHHHHh--ccCCeeEEEecCCC
Q 039519 157 SDIFRIL--SKKKLLLLLDDIWE 177 (647)
Q Consensus 157 ~~l~~~l--~~~r~LlVlDdv~~ 177 (647)
-.+.+++ +++++|+++||+-.
T Consensus 254 ~tiAEyfrd~G~~Vll~~DslTr 276 (455)
T PRK07960 254 TRIAEDFRDRGQHVLLIMDSLTR 276 (455)
T ss_pred HHHHHHHHHcCCCeEEEecchhH
Confidence 2244444 47999999999965
No 447
>PRK06820 type III secretion system ATPase; Validated
Probab=62.32 E-value=12 Score=39.87 Aligned_cols=82 Identities=18% Similarity=0.260 Sum_probs=41.9
Q ss_pred CceEEEEEccCccCCC--------CCCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCC-----cCCCCCCHHH-----HH
Q 039519 96 QVGIIGLYGMGGLLGA--------PNDFDVVIWMVVSKDL-QLEKIQERIGRRIGFLD-----ESWKNGSLED-----KA 156 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT--------~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~~-----~~ 156 (647)
.-..++|+|.+|+||| ..+-+..+..-+.+.. .+..+.+.....=.... ...+...... ..
T Consensus 162 ~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~a~~~a 241 (440)
T PRK06820 162 EGQRIGIFAAAGVGKSTLLGMLCADSAADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKGLSTA 241 (440)
T ss_pred CCCEEEEECCCCCChHHHHHHHhccCCCCEEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3457899999999999 2223444555555542 23333333322100000 0001111111 12
Q ss_pred HHHHHHh--ccCCeeEEEecCCC
Q 039519 157 SDIFRIL--SKKKLLLLLDDIWE 177 (647)
Q Consensus 157 ~~l~~~l--~~~r~LlVlDdv~~ 177 (647)
-.+.+++ +++++|+++||+-.
T Consensus 242 ~tiAEyfrd~G~~VLl~~Dsltr 264 (440)
T PRK06820 242 TTIAEYFRDRGKKVLLMADSLTR 264 (440)
T ss_pred HHHHHHHHHcCCCEEEEccchhH
Confidence 2344555 48999999999965
No 448
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=62.21 E-value=16 Score=33.30 Aligned_cols=16 Identities=13% Similarity=-0.018 Sum_probs=14.2
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
.-.+++|+|..|.|||
T Consensus 26 ~Ge~~~i~G~nGsGKS 41 (166)
T cd03223 26 PGDRLLITGPSGTGKS 41 (166)
T ss_pred CCCEEEEECCCCCCHH
Confidence 3468999999999999
No 449
>PRK00279 adk adenylate kinase; Reviewed
Probab=62.10 E-value=16 Score=34.88 Aligned_cols=13 Identities=23% Similarity=0.077 Sum_probs=11.8
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
.|.|.|++|+|||
T Consensus 2 ~I~v~G~pGsGKs 14 (215)
T PRK00279 2 RLILLGPPGAGKG 14 (215)
T ss_pred EEEEECCCCCCHH
Confidence 4789999999999
No 450
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=62.08 E-value=13 Score=33.72 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=26.7
Q ss_pred CCeeEEEecCCCcccc---ccccCCCCC-CCCCcEEEEecCchHHhhh
Q 039519 166 KKLLLLLDDIWERVDL---TKVGVPFPD-PENKSRIDFTTRFLEICSA 209 (647)
Q Consensus 166 ~r~LlVlDdv~~~~~~---~~l~~~~~~-~~~gs~IivTTR~~~v~~~ 209 (647)
++-++++|+....-+. ..+...+.. ...|+.+|++|.+.++...
T Consensus 99 ~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~ 146 (162)
T cd03227 99 PRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAEL 146 (162)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHh
Confidence 6789999999764332 112111111 1126789999998887654
No 451
>PRK03839 putative kinase; Provisional
Probab=61.71 E-value=3.6 Score=38.02 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=12.0
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
.|.|.|++|+|||
T Consensus 2 ~I~l~G~pGsGKs 14 (180)
T PRK03839 2 IIAITGTPGVGKT 14 (180)
T ss_pred EEEEECCCCCCHH
Confidence 4889999999999
No 452
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=61.71 E-value=8.1 Score=34.74 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=22.7
Q ss_pred ccchHHHHHHHHHhhh---CCceEEEEEccCccCCC
Q 039519 79 VGLESTFDKVRRCLRE---EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 79 vGr~~~~~~i~~~L~~---~~~~vi~I~G~gGiGKT 111 (647)
.|.++-++.+.+.+.. .....|+++|++|+||+
T Consensus 81 ~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKS 116 (157)
T cd01858 81 FGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKS 116 (157)
T ss_pred ccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChH
Confidence 4566666666665431 23456889999999998
No 453
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=61.29 E-value=3.1 Score=34.77 Aligned_cols=61 Identities=13% Similarity=0.230 Sum_probs=31.5
Q ss_pred EEEEccCccCCCCCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHhccCCeeEEEecCCCc
Q 039519 100 IGLYGMGGLLGAPNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDESWKNGSLEDKASDIFRILSKKKLLLLLDDIWER 178 (647)
Q Consensus 100 i~I~G~gGiGKT~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~ 178 (647)
|-|+|.+|+||| .-...+.+.+++.++..... ..-. .........-..++ -.+|+||++..
T Consensus 1 I~i~G~~G~GKS---------------~l~~~l~~~l~~~~~~~~~~-~vy~-~~~~~~~w~gY~~q-~vvi~DD~~~~ 61 (107)
T PF00910_consen 1 IWIYGPPGIGKS---------------TLAKELAKDLLKHIGEPTKD-SVYT-RNPGDKFWDGYQGQ-PVVIIDDFGQD 61 (107)
T ss_pred CEEECCCCCCHH---------------HHHHHHHHHHHHHhccCCCC-cEEe-CCCccchhhccCCC-cEEEEeecCcc
Confidence 458999999999 12344566666655322110 0000 01112233333444 45788998764
No 454
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=61.13 E-value=17 Score=39.08 Aligned_cols=82 Identities=12% Similarity=0.119 Sum_probs=49.8
Q ss_pred CceEEEEEccCccCCC--------CCCcc------eEEEEEEcCcc-CHHHHHHHHHHHhCCCCcCC-----CCCC----
Q 039519 96 QVGIIGLYGMGGLLGA--------PNDFD------VVIWMVVSKDL-QLEKIQERIGRRIGFLDESW-----KNGS---- 151 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT--------~~~F~------~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~-----~~~~---- 151 (647)
.-.-++|.|-.|+||| ....+ .++.+-+++.. .+.++.+.+...=... ... .+..
T Consensus 142 ~GQR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~-rtvvV~atsd~p~~~R 220 (460)
T PRK04196 142 RGQKLPIFSGSGLPHNELAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALE-RSVVFLNLADDPAIER 220 (460)
T ss_pred CCCEEEeeCCCCCCccHHHHHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHHHhcCCcc-eEEEEEEcCCCCHHHH
Confidence 3457899999999999 22334 56777776654 4677777776542111 100 1111
Q ss_pred --HHHHHHHHHHHhc---cCCeeEEEecCCCc
Q 039519 152 --LEDKASDIFRILS---KKKLLLLLDDIWER 178 (647)
Q Consensus 152 --~~~~~~~l~~~l~---~~r~LlVlDdv~~~ 178 (647)
.-...-.+.++++ ++++|+++||+-..
T Consensus 221 ~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 252 (460)
T PRK04196 221 ILTPRMALTAAEYLAFEKGMHVLVILTDMTNY 252 (460)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEcChHHH
Confidence 1112335666665 48999999999653
No 455
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=60.94 E-value=3.4 Score=38.29 Aligned_cols=13 Identities=15% Similarity=0.100 Sum_probs=12.1
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
||.|+|++|+|||
T Consensus 1 ~i~i~G~pGsGKs 13 (183)
T TIGR01359 1 VVFVLGGPGSGKG 13 (183)
T ss_pred CEEEECCCCCCHH
Confidence 5789999999999
No 456
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=60.81 E-value=8.7 Score=36.81 Aligned_cols=53 Identities=21% Similarity=0.286 Sum_probs=31.2
Q ss_pred HHHHHhc--cCCeeEEEecCCC---cccc----ccccCCCCCCCCCcEEEEecCchHHhhhcc
Q 039519 158 DIFRILS--KKKLLLLLDDIWE---RVDL----TKVGVPFPDPENKSRIDFTTRFLEICSAMQ 211 (647)
Q Consensus 158 ~l~~~l~--~~r~LlVlDdv~~---~~~~----~~l~~~~~~~~~gs~IivTTR~~~v~~~~~ 211 (647)
.+++.++ +++-|+++|..-. ..+- ..+...+.. ..++.+|++|...+++..+.
T Consensus 99 ~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~-~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 99 ETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVK-KVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred HHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHH-hcCCcEEEEeccHHHHHHhh
Confidence 3444443 5788999999953 2221 111112221 13788999999988866553
No 457
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=60.66 E-value=26 Score=33.18 Aligned_cols=14 Identities=36% Similarity=0.451 Sum_probs=11.1
Q ss_pred eEEEE-EccCccCCC
Q 039519 98 GIIGL-YGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I-~G~gGiGKT 111 (647)
++|.| .|.||+|||
T Consensus 3 ~iIVvTSGKGGVGKT 17 (272)
T COG2894 3 RIIVVTSGKGGVGKT 17 (272)
T ss_pred eEEEEecCCCCcCcc
Confidence 34555 899999999
No 458
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=60.61 E-value=16 Score=39.40 Aligned_cols=86 Identities=17% Similarity=0.250 Sum_probs=44.6
Q ss_pred HHHHHHhhhC--CceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcC---CCCC
Q 039519 86 DKVRRCLREE--QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDES---WKNG 150 (647)
Q Consensus 86 ~~i~~~L~~~--~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~ 150 (647)
.++-+.|..+ .-.++.|.|.+|+||| ...=..++|++..++ ...+... +..++...+. ....
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs--~~qi~~r-a~rlg~~~~~l~~~~e~ 157 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES--LQQIKMR-AIRLGLPEPNLYVLSET 157 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC--HHHHHHH-HHHcCCChHHeEEcCCC
Confidence 4444444432 4578999999999999 111135677776543 3333222 2334332211 1223
Q ss_pred CHHHHHHHHHHHhccCCeeEEEecCCC
Q 039519 151 SLEDKASDIFRILSKKKLLLLLDDIWE 177 (647)
Q Consensus 151 ~~~~~~~~l~~~l~~~r~LlVlDdv~~ 177 (647)
+.+++...+.+ .+.-++|+|.+..
T Consensus 158 ~~~~I~~~i~~---~~~~~vVIDSIq~ 181 (454)
T TIGR00416 158 NWEQICANIEE---ENPQACVIDSIQT 181 (454)
T ss_pred CHHHHHHHHHh---cCCcEEEEecchh
Confidence 44444433322 2455788888743
No 459
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=60.50 E-value=3.8 Score=40.73 Aligned_cols=13 Identities=31% Similarity=0.841 Sum_probs=12.1
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
+|+|.|.||+|||
T Consensus 2 ~i~v~gKGGvGKT 14 (267)
T cd02032 2 VLAVYGKGGIGKS 14 (267)
T ss_pred EEEEecCCCCCHH
Confidence 6889999999999
No 460
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=60.32 E-value=21 Score=38.47 Aligned_cols=83 Identities=18% Similarity=0.202 Sum_probs=50.5
Q ss_pred CceEEEEEccCccCCC--------C-CCc--ceEEEEEEcCcc-CHHHHHHHHHHHhCCCCc------CC-----CCCCH
Q 039519 96 QVGIIGLYGMGGLLGA--------P-NDF--DVVIWMVVSKDL-QLEKIQERIGRRIGFLDE------SW-----KNGSL 152 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT--------~-~~F--~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~------~~-----~~~~~ 152 (647)
.-.-++|.|-+|+||| . ..+ +.++++-+++.. .+.++.+.+...-..... .. -+...
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~ 239 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPP 239 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHHHhcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCH
Confidence 3457899999999999 1 234 677888887764 467777777652111100 00 01111
Q ss_pred ------HHHHHHHHHHhc--cC-CeeEEEecCCCc
Q 039519 153 ------EDKASDIFRILS--KK-KLLLLLDDIWER 178 (647)
Q Consensus 153 ------~~~~~~l~~~l~--~~-r~LlVlDdv~~~ 178 (647)
....-.+.++++ ++ ++|+++||+-.-
T Consensus 240 ~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 240 GARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 122335667774 44 999999999653
No 461
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=60.27 E-value=29 Score=38.31 Aligned_cols=123 Identities=13% Similarity=0.155 Sum_probs=68.2
Q ss_pred hHHHHHHHHHhhhCCceEEEEEccCccCCC--------CCCcceEEEEEEcCccC--HHHHHHHHHHHhCCCCc------
Q 039519 82 ESTFDKVRRCLREEQVGIIGLYGMGGLLGA--------PNDFDVVIWMVVSKDLQ--LEKIQERIGRRIGFLDE------ 145 (647)
Q Consensus 82 ~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT--------~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~------ 145 (647)
.+..++|...+.+. .|+.|+|--|.||| ...|...--|-+.++.. ...+.+.++...+...+
T Consensus 53 ~~~r~~il~~ve~n--qvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~ 130 (674)
T KOG0922|consen 53 YKYRDQILYAVEDN--QVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYT 130 (674)
T ss_pred HHHHHHHHHHHHHC--CEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeE
Confidence 44456666666554 58889999999999 33443221256666654 45567777777654221
Q ss_pred -CCCCC-CHHHH------HHHHHHHhc----cCCeeEEEecCCCccc----cccccCCCCCCCCCcEEEEecCchHH
Q 039519 146 -SWKNG-SLEDK------ASDIFRILS----KKKLLLLLDDIWERVD----LTKVGVPFPDPENKSRIDFTTRFLEI 206 (647)
Q Consensus 146 -~~~~~-~~~~~------~~~l~~~l~----~~r~LlVlDdv~~~~~----~~~l~~~~~~~~~gs~IivTTR~~~v 206 (647)
++++. +.+.. .-.+++.+. .+=-.||+|.+.+... +-.+...+-.....-|+||+|=.-+.
T Consensus 131 IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSATlda 207 (674)
T KOG0922|consen 131 IRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSATLDA 207 (674)
T ss_pred EEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEeeeecH
Confidence 01110 10000 124555553 4556899999987633 22222222222345689999875443
No 462
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=60.26 E-value=19 Score=38.19 Aligned_cols=36 Identities=19% Similarity=0.073 Sum_probs=26.8
Q ss_pred CCcccchHHHHHHHHHhh-------h---C--------CceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLR-------E---E--------QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~-------~---~--------~~~vi~I~G~gGiGKT 111 (647)
..+||.++.++.+...+. . . ..+.|.++|.+|+|||
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT 130 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKT 130 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHH
Confidence 456999998888866552 1 0 1256889999999999
No 463
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=60.16 E-value=38 Score=34.58 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=20.4
Q ss_pred HHHHHHHHhhhCC-ceEEEEEccCccCCC
Q 039519 84 TFDKVRRCLREEQ-VGIIGLYGMGGLLGA 111 (647)
Q Consensus 84 ~~~~i~~~L~~~~-~~vi~I~G~gGiGKT 111 (647)
..+++.+.+..++ ...+-++|..|+||+
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~ 39 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVE 39 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHH
Confidence 4556666666554 347889999999998
No 464
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=59.91 E-value=34 Score=36.23 Aligned_cols=82 Identities=18% Similarity=0.241 Sum_probs=44.6
Q ss_pred CceEEEEEccCccCCC--------CCCcceEEEEEEcCc-cCHHHHHHHHHHHhCCCC-----cCCCCCC-----HHHHH
Q 039519 96 QVGIIGLYGMGGLLGA--------PNDFDVVIWMVVSKD-LQLEKIQERIGRRIGFLD-----ESWKNGS-----LEDKA 156 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT--------~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~-----~~~~~ 156 (647)
.-..++|+|..|+||| ....+..+...+.+. ..+.++.+.....=.... ...+... .-...
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~~a 215 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFYA 215 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHH
Confidence 4457999999999999 223344444555554 345556555543311100 0001111 11112
Q ss_pred HHHHHHh--ccCCeeEEEecCCC
Q 039519 157 SDIFRIL--SKKKLLLLLDDIWE 177 (647)
Q Consensus 157 ~~l~~~l--~~~r~LlVlDdv~~ 177 (647)
-.+.+++ +++++|+++||+-.
T Consensus 216 ~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 216 TAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHCCCCEEEEEeChHH
Confidence 2344444 58999999999965
No 465
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=59.61 E-value=4 Score=40.58 Aligned_cols=13 Identities=38% Similarity=0.864 Sum_probs=11.8
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
+|+|.|.||+|||
T Consensus 2 ~i~~~gKGGVGKT 14 (268)
T TIGR01281 2 ILAVYGKGGIGKS 14 (268)
T ss_pred EEEEEcCCcCcHH
Confidence 5788899999999
No 466
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=59.40 E-value=5.8 Score=37.75 Aligned_cols=14 Identities=36% Similarity=0.691 Sum_probs=12.9
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
+-|+|+|.|||||+
T Consensus 2 r~iAiYGKGGIGKS 15 (278)
T COG1348 2 RQIAIYGKGGIGKS 15 (278)
T ss_pred ceEEEecCCCcCcc
Confidence 57999999999998
No 467
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=59.29 E-value=19 Score=38.50 Aligned_cols=82 Identities=18% Similarity=0.212 Sum_probs=41.0
Q ss_pred CceEEEEEccCccCCC--------CCCcceEEEEEEcCc-cCHHHHHHHHHHHhCCCCc----CCCCCCHH------HHH
Q 039519 96 QVGIIGLYGMGGLLGA--------PNDFDVVIWMVVSKD-LQLEKIQERIGRRIGFLDE----SWKNGSLE------DKA 156 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT--------~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~~------~~~ 156 (647)
.-..++|+|..|+||| ...-+......+... ..+.++.......-..... ...+.... ...
T Consensus 162 ~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~~~~~a 241 (440)
T TIGR01026 162 KGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKGAYVA 241 (440)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHHH
Confidence 4457899999999999 111223333334332 2345555443332111000 00111111 112
Q ss_pred HHHHHHh--ccCCeeEEEecCCC
Q 039519 157 SDIFRIL--SKKKLLLLLDDIWE 177 (647)
Q Consensus 157 ~~l~~~l--~~~r~LlVlDdv~~ 177 (647)
-.+.+++ +++++|+++||+-.
T Consensus 242 ~t~AE~frd~G~~Vll~~DslTr 264 (440)
T TIGR01026 242 TAIAEYFRDQGKDVLLLMDSVTR 264 (440)
T ss_pred HHHHHHHHHCCCCEEEEEeChHH
Confidence 2234444 57999999999964
No 468
>PTZ00301 uridine kinase; Provisional
Probab=59.17 E-value=4.8 Score=38.35 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=13.9
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+|||.|.+|+|||
T Consensus 3 ~~iIgIaG~SgSGKT 17 (210)
T PTZ00301 3 CTVIGISGASGSGKS 17 (210)
T ss_pred CEEEEEECCCcCCHH
Confidence 468999999999999
No 469
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=58.99 E-value=18 Score=34.99 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.3
Q ss_pred HHHHHhhhCCceEEEEEccCccCCC
Q 039519 87 KVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 87 ~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
.+.+.+.....++|-+=|.||+|||
T Consensus 9 ~l~nil~q~slKwifVGGKGGVGKT 33 (323)
T KOG2825|consen 9 TLQNILEQTSLKWIFVGGKGGVGKT 33 (323)
T ss_pred hHHHHhhcceeeEEEEcCcCCcCcc
Confidence 4566666778999999999999999
No 470
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=58.92 E-value=4.6 Score=40.85 Aligned_cols=16 Identities=31% Similarity=0.657 Sum_probs=14.1
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
..++|+|.|.||+|||
T Consensus 3 ~~~~iai~~KGGvGKT 18 (295)
T PRK13234 3 KLRQIAFYGKGGIGKS 18 (295)
T ss_pred cceEEEEECCCCccHH
Confidence 3578999999999999
No 471
>COG3910 Predicted ATPase [General function prediction only]
Probab=58.90 E-value=16 Score=33.77 Aligned_cols=62 Identities=11% Similarity=0.104 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhccCCeeEEEecCCCc----ccccccc--CCCCCCCCCcEEEEecCchHHhhhcccceeEec
Q 039519 153 EDKASDIFRILSKKKLLLLLDDIWER----VDLTKVG--VPFPDPENKSRIDFTTRFLEICSAMQAHEFLKV 218 (647)
Q Consensus 153 ~~~~~~l~~~l~~~r~LlVlDdv~~~----~~~~~l~--~~~~~~~~gs~IivTTR~~~v~~~~~~~~~~~~ 218 (647)
+.....+.+++.+ +=+-|||.-... .|++-+. ..+. ..|+.|||.|.+.-+... .....|..
T Consensus 134 Esf~~i~~~rf~~-~GiYiLDEPEa~LSp~RQlella~l~~la--~sGaQ~IiATHSPiLlAi-P~A~I~~~ 201 (233)
T COG3910 134 ESFLAIFHNRFNG-QGIYILDEPEAALSPSRQLELLAILRDLA--DSGAQIIIATHSPILLAI-PGAEIYEI 201 (233)
T ss_pred hHHHHHHHHHhcc-CceEEecCccccCCHHHHHHHHHHHHHHH--hcCCeEEEEecChhheeC-CCcEEEEE
Confidence 3345555555544 445678876542 2332221 1122 346889999998877442 23345554
No 472
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=58.87 E-value=20 Score=37.99 Aligned_cols=82 Identities=13% Similarity=0.175 Sum_probs=42.6
Q ss_pred CCceEEEEEccCccCCC--------CCCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCC-----cCCCCCCHH------H
Q 039519 95 EQVGIIGLYGMGGLLGA--------PNDFDVVIWMVVSKDL-QLEKIQERIGRRIGFLD-----ESWKNGSLE------D 154 (647)
Q Consensus 95 ~~~~vi~I~G~gGiGKT--------~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~------~ 154 (647)
..-..++|+|..|+||| ...-+..+..-+++.. .+.++....+.+-+... ...+ .... .
T Consensus 135 ~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd-~~~~~r~~~~~ 213 (413)
T TIGR03497 135 GKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSD-QPALMRLKAAF 213 (413)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCC-CCHHHHHHHHH
Confidence 34568999999999999 1111222222344332 45555555443311110 0001 1111 1
Q ss_pred HHHHHHHHh--ccCCeeEEEecCCC
Q 039519 155 KASDIFRIL--SKKKLLLLLDDIWE 177 (647)
Q Consensus 155 ~~~~l~~~l--~~~r~LlVlDdv~~ 177 (647)
..-.+.+++ +++++|+++||+-.
T Consensus 214 ~a~tiAEyfr~~G~~Vll~~Dsltr 238 (413)
T TIGR03497 214 TATAIAEYFRDQGKDVLLMMDSVTR 238 (413)
T ss_pred HHHHHHHHHHHCCCCEEEEEcCcHH
Confidence 123344444 47999999999965
No 473
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=58.84 E-value=6.3 Score=39.53 Aligned_cols=17 Identities=18% Similarity=0.048 Sum_probs=15.2
Q ss_pred CCceEEEEEccCccCCC
Q 039519 95 EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 95 ~~~~vi~I~G~gGiGKT 111 (647)
....+|||.|..|+|||
T Consensus 60 ~~p~IIGIaG~~GSGKS 76 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKS 76 (290)
T ss_pred CCCEEEEEECCCCCCHH
Confidence 35679999999999999
No 474
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=58.72 E-value=4.4 Score=39.57 Aligned_cols=14 Identities=36% Similarity=0.686 Sum_probs=12.8
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
+.|+|+|.|||||+
T Consensus 1 r~IAiYGKGGIGKS 14 (273)
T PF00142_consen 1 RKIAIYGKGGIGKS 14 (273)
T ss_dssp EEEEEEESTTSSHH
T ss_pred CeEEEEcCCCcccC
Confidence 46899999999998
No 475
>PRK12678 transcription termination factor Rho; Provisional
Probab=58.60 E-value=8.6 Score=42.01 Aligned_cols=80 Identities=14% Similarity=0.107 Sum_probs=41.7
Q ss_pred CceEEEEEccCccCCC-----------CCCcceEEEEE-EcCcc-CHHHHHHHHHHHhCCCCcCCCCC-----CHHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA-----------PNDFDVVIWMV-VSKDL-QLEKIQERIGRRIGFLDESWKNG-----SLEDKAS 157 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT-----------~~~F~~~~wv~-~s~~~-~~~~~~~~i~~~l~~~~~~~~~~-----~~~~~~~ 157 (647)
.-.-.+|+|.+|+||| ..+-+..++|. |.+.. .+.++.+.+-..+-.. .++.. ......-
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVas--T~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIAS--TFDRPPSDHTTVAELAI 492 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEE--CCCCCHHHHHHHHHHHH
Confidence 3456789999999999 22334444443 44433 3444544431111100 11111 1112222
Q ss_pred HHHHHh--ccCCeeEEEecCCC
Q 039519 158 DIFRIL--SKKKLLLLLDDIWE 177 (647)
Q Consensus 158 ~l~~~l--~~~r~LlVlDdv~~ 177 (647)
.+.+++ .++.+||++|++-.
T Consensus 493 ~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCchH
Confidence 344444 57999999999854
No 476
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=58.41 E-value=19 Score=33.20 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=14.3
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
.-.+++|+|..|+|||
T Consensus 24 ~Ge~~~l~G~nGsGKS 39 (177)
T cd03222 24 EGEVIGIVGPNGTGKT 39 (177)
T ss_pred CCCEEEEECCCCChHH
Confidence 4469999999999999
No 477
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=58.24 E-value=3.8 Score=38.56 Aligned_cols=13 Identities=38% Similarity=0.470 Sum_probs=12.3
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
+|||.|.+|+|||
T Consensus 1 iigi~G~~GsGKS 13 (198)
T cd02023 1 IIGIAGGSGSGKT 13 (198)
T ss_pred CEEEECCCCCCHH
Confidence 5899999999999
No 478
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=58.21 E-value=23 Score=36.38 Aligned_cols=83 Identities=14% Similarity=0.167 Sum_probs=47.3
Q ss_pred CceEEEEEccCccCCC-----------CCCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCC---------cCCCC-CCHH
Q 039519 96 QVGIIGLYGMGGLLGA-----------PNDFDVVIWMVVSKDL-QLEKIQERIGRRIGFLD---------ESWKN-GSLE 153 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT-----------~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~---------~~~~~-~~~~ 153 (647)
+-.-||+.|-+|+||| +.|=...+|.-+++.- .-.+++.++...--.+. +.... ....
T Consensus 146 kGgKiGLFGGAGVGKTVl~~ELI~Nia~~h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RVa 225 (468)
T COG0055 146 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVA 225 (468)
T ss_pred cCceeeeeccCCccceeeHHHHHHHHHHHcCCeEEEEeccccccchHHHHHHHHhcCCCCceeEEEeecCCCCcceeeeh
Confidence 3457899999999999 4444567888776653 45667777665521110 00000 0000
Q ss_pred HHHHHHHHHhc---cCCeeEEEecCCCc
Q 039519 154 DKASDIFRILS---KKKLLLLLDDIWER 178 (647)
Q Consensus 154 ~~~~~l~~~l~---~~r~LlVlDdv~~~ 178 (647)
-..=.+.++++ ++.+|+.+||+..-
T Consensus 226 ltGlT~AEyfRD~~gqdVLlFIDNIfRf 253 (468)
T COG0055 226 LTGLTMAEYFRDEEGQDVLLFIDNIFRF 253 (468)
T ss_pred hhhhhHHHHhhcccCCeEEEEehhhhHH
Confidence 00112333443 67899999999753
No 479
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=58.19 E-value=7 Score=40.12 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=28.3
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
+.++|.++.++.+.-.+.+.+..-+.+.|.+|+|||
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT 43 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKS 43 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHH
Confidence 557999998888776555444455889999999999
No 480
>COG4128 Zot Zonula occludens toxin [General function prediction only]
Probab=57.91 E-value=18 Score=35.75 Aligned_cols=31 Identities=10% Similarity=0.057 Sum_probs=17.3
Q ss_pred CeeEEEecCCCccccccccCCCCCCCCCcEE
Q 039519 167 KLLLLLDDIWERVDLTKVGVPFPDPENKSRI 197 (647)
Q Consensus 167 r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~I 197 (647)
..-||.||+.+.+....++....|...|.-+
T Consensus 55 ~i~I~n~D~~~~d~~~~m~~~~~wa~~gafl 85 (398)
T COG4128 55 EIIIVNDDVLKADFFPFMGGEGSWAQFGAFL 85 (398)
T ss_pred ceEEEeccccCcccchhhcceeeccccCcEE
Confidence 3456666766666655555555555444433
No 481
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=57.87 E-value=22 Score=35.81 Aligned_cols=46 Identities=22% Similarity=0.300 Sum_probs=28.2
Q ss_pred EEEEEccCccCCC-------------CCCcc-------eEEEEEEcCc-cCHHHHHHHHHHHhCCCC
Q 039519 99 IIGLYGMGGLLGA-------------PNDFD-------VVIWMVVSKD-LQLEKIQERIGRRIGFLD 144 (647)
Q Consensus 99 vi~I~G~gGiGKT-------------~~~F~-------~~~wv~~s~~-~~~~~~~~~i~~~l~~~~ 144 (647)
++-|.|.||+||| ++-|. .++.|++... .++-.=++.+..+++...
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsP 157 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSP 157 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCCh
Confidence 3345699999999 44453 4555554332 244455666777777654
No 482
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=57.81 E-value=28 Score=37.63 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=14.0
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
.+|++++|..|+|||
T Consensus 256 g~Vi~LvGpnGvGKT 270 (484)
T PRK06995 256 GGVFALMGPTGVGKT 270 (484)
T ss_pred CcEEEEECCCCccHH
Confidence 479999999999999
No 483
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=57.78 E-value=4.7 Score=37.17 Aligned_cols=14 Identities=21% Similarity=0.161 Sum_probs=12.9
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
.+++|+|++|+|||
T Consensus 2 ~~~~i~G~sGsGKt 15 (179)
T TIGR02322 2 RLIYVVGPSGAGKD 15 (179)
T ss_pred cEEEEECCCCCCHH
Confidence 47899999999999
No 484
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=57.57 E-value=24 Score=34.05 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=16.8
Q ss_pred HHHHHHHHHhccCCeeEEEecCC
Q 039519 154 DKASDIFRILSKKKLLLLLDDIW 176 (647)
Q Consensus 154 ~~~~~l~~~l~~~r~LlVlDdv~ 176 (647)
+..=.|.+.|..+.-||+||..-
T Consensus 155 qR~LEIArALa~~P~lLLLDEPa 177 (250)
T COG0411 155 QRRLEIARALATQPKLLLLDEPA 177 (250)
T ss_pred hHHHHHHHHHhcCCCEEEecCcc
Confidence 33445666777888899999875
No 485
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=57.24 E-value=16 Score=37.33 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=10.2
Q ss_pred ceEEEE--EccCccCCC
Q 039519 97 VGIIGL--YGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I--~G~gGiGKT 111 (647)
+.||+| .+.||.|||
T Consensus 49 ~pvIsVGNi~vGGtGKT 65 (325)
T PRK00652 49 VPVIVVGNITVGGTGKT 65 (325)
T ss_pred CCEEEEcCeeCCCCChH
Confidence 456666 677777777
No 486
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=57.23 E-value=4.5 Score=41.06 Aligned_cols=14 Identities=29% Similarity=0.332 Sum_probs=13.1
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
+++-+.|.||+|||
T Consensus 2 r~~~~~GKGGVGKT 15 (305)
T PF02374_consen 2 RILFFGGKGGVGKT 15 (305)
T ss_dssp SEEEEEESTTSSHH
T ss_pred eEEEEecCCCCCcH
Confidence 68899999999999
No 487
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=57.22 E-value=20 Score=32.75 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=24.3
Q ss_pred cccchHHHHHHHHHhhh--CCceEEEEEccCccCCC
Q 039519 78 TVGLESTFDKVRRCLRE--EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 78 ~vGr~~~~~~i~~~L~~--~~~~vi~I~G~gGiGKT 111 (647)
+||.+..+.++.+.+.. ....-|-|+|-.|+||+
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~ 36 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKE 36 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHH
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHH
Confidence 47888888888887764 22345669999999999
No 488
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=56.91 E-value=47 Score=34.26 Aligned_cols=43 Identities=7% Similarity=0.010 Sum_probs=24.1
Q ss_pred cCCeeEEEecCCCc--cccccccCCCCCCCCCcEEEEec-CchHHh
Q 039519 165 KKKLLLLLDDIWER--VDLTKVGVPFPDPENKSRIDFTT-RFLEIC 207 (647)
Q Consensus 165 ~~r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTT-R~~~v~ 207 (647)
+++=++|+|+++.. .....+...+.....++.+|.+| +-..+.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LL 176 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLL 176 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCc
Confidence 34557888999864 33444444444445566555444 445554
No 489
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=56.83 E-value=5 Score=39.92 Aligned_cols=14 Identities=29% Similarity=0.676 Sum_probs=13.0
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
++|+|.|.||+|||
T Consensus 3 ~iIav~~KGGVGKT 16 (270)
T PRK13185 3 LVLAVYGKGGIGKS 16 (270)
T ss_pred eEEEEECCCCCCHH
Confidence 68889999999999
No 490
>PRK01184 hypothetical protein; Provisional
Probab=56.65 E-value=5.1 Score=37.19 Aligned_cols=14 Identities=43% Similarity=0.548 Sum_probs=13.1
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
.+|+|+|++|+|||
T Consensus 2 ~~i~l~G~~GsGKs 15 (184)
T PRK01184 2 KIIGVVGMPGSGKG 15 (184)
T ss_pred cEEEEECCCCCCHH
Confidence 48999999999999
No 491
>PRK13947 shikimate kinase; Provisional
Probab=56.49 E-value=4.9 Score=36.69 Aligned_cols=13 Identities=31% Similarity=0.164 Sum_probs=12.0
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
-|.|+||+|+|||
T Consensus 3 ~I~l~G~~GsGKs 15 (171)
T PRK13947 3 NIVLIGFMGTGKT 15 (171)
T ss_pred eEEEEcCCCCCHH
Confidence 4889999999999
No 492
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=56.47 E-value=26 Score=36.44 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=21.4
Q ss_pred eEEEEEccCccCCC------------CCCcceEEEEEEcCc
Q 039519 98 GIIGLYGMGGLLGA------------PNDFDVVIWMVVSKD 126 (647)
Q Consensus 98 ~vi~I~G~gGiGKT------------~~~F~~~~wv~~s~~ 126 (647)
.++.|.|.+|.||| .......+.++....
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHP 42 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecch
Confidence 48899999999999 123456677776664
No 493
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=56.29 E-value=31 Score=31.59 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=17.0
Q ss_pred HHHHhhh-CCceEEEEEccCccCCC
Q 039519 88 VRRCLRE-EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 88 i~~~L~~-~~~~vi~I~G~gGiGKT 111 (647)
+.+.+.. ..-.-|.|.|+.|+|||
T Consensus 4 ~~~~~~~~~~~~~ililGl~~sGKT 28 (175)
T PF00025_consen 4 VLSKLKSKKKEIKILILGLDGSGKT 28 (175)
T ss_dssp HHHHCTTTTSEEEEEEEESTTSSHH
T ss_pred HHHHhcccCcEEEEEEECCCccchH
Confidence 3344433 45567889999999999
No 494
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=56.25 E-value=7.8 Score=35.02 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=20.3
Q ss_pred HHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 84 TFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 84 ~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
.++++.+.+.+ +++.++|..|+||+
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKS 49 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKS 49 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHH
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHH
Confidence 46677777754 69999999999998
No 495
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=56.16 E-value=12 Score=32.67 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhh--CCceEEEEEccCccCCC
Q 039519 83 STFDKVRRCLRE--EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 83 ~~~~~i~~~L~~--~~~~vi~I~G~gGiGKT 111 (647)
++.+++-+.+.. ....+|.+.|.-|.|||
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKT 36 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKT 36 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHH
Confidence 344555555543 34468999999999999
No 496
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=56.12 E-value=42 Score=35.62 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=14.4
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
+..+|+++|..|+|||
T Consensus 190 ~g~vi~lvGpnG~GKT 205 (420)
T PRK14721 190 QGGVYALIGPTGVGKT 205 (420)
T ss_pred CCcEEEEECCCCCCHH
Confidence 3579999999999999
No 497
>PRK00889 adenylylsulfate kinase; Provisional
Probab=55.97 E-value=6.2 Score=36.28 Aligned_cols=16 Identities=13% Similarity=0.081 Sum_probs=14.2
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+|+|.|++|+|||
T Consensus 3 ~g~~i~~~G~~GsGKS 18 (175)
T PRK00889 3 RGVTVWFTGLSGAGKT 18 (175)
T ss_pred CCeEEEEECCCCCCHH
Confidence 3468999999999999
No 498
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=55.67 E-value=5.4 Score=39.55 Aligned_cols=15 Identities=33% Similarity=0.674 Sum_probs=13.4
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
.++|+|.|.||+|||
T Consensus 2 ~~~iav~~KGGvGKT 16 (264)
T PRK13231 2 MKKIAIYGKGGIGKS 16 (264)
T ss_pred ceEEEEECCCCCcHH
Confidence 368999999999999
No 499
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=55.46 E-value=42 Score=36.64 Aligned_cols=87 Identities=15% Similarity=0.088 Sum_probs=47.7
Q ss_pred HHHHHhhhC--CceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcC--------
Q 039519 87 KVRRCLREE--QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDES-------- 146 (647)
Q Consensus 87 ~i~~~L~~~--~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------- 146 (647)
++-+.|..+ .-+++.|.|.+|+||| ...=+.++++...++ ..++.+.. +.++.+.+.
T Consensus 251 ~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~g~l~ 327 (484)
T TIGR02655 251 RLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQGLLK 327 (484)
T ss_pred hHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhCCcEE
Confidence 444444432 4679999999999999 112235666665553 44555543 344432110
Q ss_pred -----CCCCCHHHHHHHHHHHhcc-CCeeEEEecCC
Q 039519 147 -----WKNGSLEDKASDIFRILSK-KKLLLLLDDIW 176 (647)
Q Consensus 147 -----~~~~~~~~~~~~l~~~l~~-~r~LlVlDdv~ 176 (647)
......++....+.+.+.. +.-.+|+|.+.
T Consensus 328 ~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 328 IICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred EEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 0112345566666666644 34467777763
No 500
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=55.32 E-value=20 Score=40.27 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=26.0
Q ss_pred ceEEEEEccCccCCC----------CCCc---ceEEEEEEcCccCHHHHHHHHHHH
Q 039519 97 VGIIGLYGMGGLLGA----------PNDF---DVVIWMVVSKDLQLEKIQERIGRR 139 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT----------~~~F---~~~~wv~~s~~~~~~~~~~~i~~~ 139 (647)
.++..|.|-+|.||| .... ...+.+.....--...+.+.+...
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~ 222 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKA 222 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhh
Confidence 468889999999999 1111 134555555544455555555443
Done!