Query 039519
Match_columns 647
No_of_seqs 327 out of 3254
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 18:05:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039519.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039519hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 5.7E-38 1.9E-42 345.2 20.0 269 79-366 131-457 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.1E-32 3.8E-37 306.8 15.6 256 77-366 129-429 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.6E-31 5.5E-36 324.1 24.0 273 73-366 121-438 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 7.6E-29 2.6E-33 276.4 21.0 270 74-366 122-438 (591)
5 4fcg_A Uncharacterized protein 99.9 2.7E-21 9.4E-26 198.5 14.6 219 395-636 81-309 (328)
6 4fcg_A Uncharacterized protein 99.8 1.7E-19 5.8E-24 185.1 12.8 215 377-612 85-311 (328)
7 1ogq_A PGIP-2, polygalacturona 99.8 1.2E-19 4E-24 185.2 9.9 227 388-638 69-301 (313)
8 2z66_A Variable lymphocyte rec 99.8 2.6E-19 8.9E-24 182.1 10.9 241 376-637 10-257 (306)
9 3zyi_A Leucine-rich repeat-con 99.8 4.7E-19 1.6E-23 190.5 13.5 238 377-637 58-299 (452)
10 3zyj_A Leucine-rich repeat-con 99.8 4.2E-19 1.4E-23 190.2 12.8 235 377-634 47-285 (440)
11 4fmz_A Internalin; leucine ric 99.8 2.8E-18 9.5E-23 177.8 18.3 247 376-638 47-321 (347)
12 2id5_A Lingo-1, leucine rich r 99.8 1.8E-18 6E-23 187.5 16.7 100 396-497 33-135 (477)
13 1ogq_A PGIP-2, polygalacturona 99.8 3.3E-19 1.1E-23 181.9 9.6 224 395-639 50-279 (313)
14 1ozn_A Reticulon 4 receptor; N 99.8 2.2E-18 7.7E-23 173.3 15.1 233 376-628 14-251 (285)
15 1xku_A Decorin; proteoglycan, 99.8 2.1E-18 7.2E-23 177.4 14.9 214 375-611 33-249 (330)
16 3v47_A TOLL-like receptor 5B a 99.8 1.5E-18 5.2E-23 186.8 13.9 97 377-475 14-113 (455)
17 3o6n_A APL1; leucine-rich repe 99.8 3.5E-18 1.2E-22 180.1 15.5 123 375-499 47-174 (390)
18 2z80_A TOLL-like receptor 2, v 99.8 1.1E-18 3.8E-23 181.3 11.2 227 379-613 37-312 (353)
19 3oja_B Anopheles plasmodium-re 99.8 3.9E-18 1.3E-22 189.9 15.1 121 377-499 55-180 (597)
20 2z80_A TOLL-like receptor 2, v 99.8 8.9E-18 3.1E-22 174.4 16.6 217 375-596 54-318 (353)
21 2id5_A Lingo-1, leucine rich r 99.8 8E-18 2.7E-22 182.3 16.8 245 375-640 34-284 (477)
22 4fmz_A Internalin; leucine ric 99.7 1.7E-17 5.7E-22 171.9 17.3 244 376-640 91-345 (347)
23 2ft3_A Biglycan; proteoglycan, 99.7 5.7E-18 2E-22 174.3 13.6 218 376-612 36-274 (332)
24 3rgz_A Protein brassinosteroid 99.7 5.4E-18 1.8E-22 194.4 14.8 233 390-639 413-715 (768)
25 3j0a_A TOLL-like receptor 5; m 99.7 6.5E-18 2.2E-22 195.7 14.9 122 376-500 7-133 (844)
26 2z66_A Variable lymphocyte rec 99.7 1.2E-18 4E-23 177.3 7.1 241 375-633 30-279 (306)
27 3zyi_A Leucine-rich repeat-con 99.7 7.9E-18 2.7E-22 180.9 14.0 223 375-617 77-305 (452)
28 3o6n_A APL1; leucine-rich repe 99.7 1.2E-17 4.1E-22 175.9 15.0 135 392-542 42-179 (390)
29 1o6v_A Internalin A; bacterial 99.7 2.5E-17 8.5E-22 177.8 17.5 245 375-639 48-320 (466)
30 3zyj_A Leucine-rich repeat-con 99.7 8.1E-18 2.8E-22 180.2 13.5 224 376-619 67-296 (440)
31 4eco_A Uncharacterized protein 99.7 2.2E-18 7.6E-23 193.0 8.1 202 390-612 201-467 (636)
32 4ecn_A Leucine-rich repeat pro 99.7 2.3E-17 7.9E-22 188.5 15.7 235 396-639 549-817 (876)
33 4eco_A Uncharacterized protein 99.7 1.2E-17 4.1E-22 187.1 13.1 96 378-475 310-412 (636)
34 4ecn_A Leucine-rich repeat pro 99.7 5.4E-18 1.8E-22 193.8 9.9 228 389-639 442-739 (876)
35 1ziw_A TOLL-like receptor 3; i 99.7 1.4E-17 4.8E-22 188.7 13.3 123 376-500 7-131 (680)
36 1ozn_A Reticulon 4 receptor; N 99.7 2.1E-17 7.2E-22 166.1 12.7 220 398-639 14-236 (285)
37 3oja_B Anopheles plasmodium-re 99.7 2.9E-17 9.8E-22 182.9 14.3 134 393-542 49-185 (597)
38 3t6q_A CD180 antigen; protein- 99.7 3.6E-17 1.2E-21 182.8 14.9 122 376-499 15-138 (606)
39 3v47_A TOLL-like receptor 5B a 99.7 3.3E-17 1.1E-21 176.3 13.8 124 375-499 32-163 (455)
40 2z62_A TOLL-like receptor 4, v 99.7 7.2E-17 2.5E-21 161.4 14.9 226 377-622 11-244 (276)
41 3bz5_A Internalin-J, INLJ; leu 99.7 5.1E-17 1.8E-21 174.3 14.7 200 375-612 44-243 (457)
42 2o6q_A Variable lymphocyte rec 99.7 3.6E-17 1.2E-21 163.0 12.3 199 376-618 19-221 (270)
43 1h6u_A Internalin H; cell adhe 99.7 3E-17 1E-21 166.9 11.8 191 392-613 38-228 (308)
44 1o6v_A Internalin A; bacterial 99.7 1.5E-16 5.2E-21 171.6 17.9 245 376-638 71-363 (466)
45 3rgz_A Protein brassinosteroid 99.7 4.9E-17 1.7E-21 186.4 14.6 226 394-639 393-691 (768)
46 3t6q_A CD180 antigen; protein- 99.7 5.6E-17 1.9E-21 181.2 14.6 248 378-636 259-531 (606)
47 3vq2_A TLR4, TOLL-like recepto 99.7 1.8E-16 6.3E-21 177.0 18.6 122 375-499 34-162 (606)
48 2z7x_B TOLL-like receptor 1, v 99.7 1.2E-16 4.1E-21 175.0 15.8 118 376-499 3-124 (520)
49 1p9a_G Platelet glycoprotein I 99.7 5.1E-17 1.7E-21 163.5 10.9 197 377-618 14-211 (290)
50 1xku_A Decorin; proteoglycan, 99.7 9.2E-17 3.1E-21 165.1 13.1 217 396-639 32-251 (330)
51 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 3E-16 1E-20 173.5 17.7 98 375-475 54-156 (562)
52 1wwl_A Monocyte differentiatio 99.7 1.3E-17 4.6E-22 169.9 6.0 225 396-640 64-308 (312)
53 2z7x_B TOLL-like receptor 1, v 99.7 3.4E-16 1.2E-20 171.4 17.6 116 521-638 341-478 (520)
54 2xwt_C Thyrotropin receptor; s 99.7 7E-17 2.4E-21 157.8 10.6 204 385-612 23-236 (239)
55 2z81_A CD282 antigen, TOLL-lik 99.7 1.7E-16 6E-21 175.0 15.1 124 376-500 29-158 (549)
56 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 6.1E-16 2.1E-20 171.1 19.4 119 376-500 34-156 (562)
57 3oja_A Leucine-rich immune mol 99.7 2.2E-17 7.6E-22 178.7 7.5 226 377-633 38-267 (487)
58 3vq2_A TLR4, TOLL-like recepto 99.7 5.9E-17 2E-21 181.0 10.6 240 378-638 290-555 (606)
59 3o53_A Protein LRIM1, AGAP0063 99.7 3E-17 1E-21 167.6 6.3 228 376-634 37-268 (317)
60 2ft3_A Biglycan; proteoglycan, 99.7 1.8E-16 6.1E-21 163.1 12.0 251 375-637 56-329 (332)
61 3oja_A Leucine-rich immune mol 99.7 9.3E-17 3.2E-21 173.8 9.2 215 393-639 32-248 (487)
62 2z62_A TOLL-like receptor 4, v 99.7 1.9E-16 6.5E-21 158.3 9.6 217 400-638 12-234 (276)
63 2z63_A TOLL-like receptor 4, v 99.6 3E-16 1E-20 173.8 11.9 60 576-637 393-454 (570)
64 3j0a_A TOLL-like receptor 5; m 99.6 3.6E-16 1.2E-20 181.1 12.8 125 375-500 26-158 (844)
65 4g8a_A TOLL-like receptor 4; l 99.6 1.6E-15 5.5E-20 170.1 17.6 63 575-639 490-553 (635)
66 3o53_A Protein LRIM1, AGAP0063 99.6 1.1E-16 3.8E-21 163.5 7.0 218 392-640 31-249 (317)
67 3g06_A SSPH2 (leucine-rich rep 99.6 4E-16 1.4E-20 172.6 11.6 95 376-483 64-158 (622)
68 3bz5_A Internalin-J, INLJ; leu 99.6 4.4E-16 1.5E-20 167.0 11.5 210 387-639 34-244 (457)
69 2z81_A CD282 antigen, TOLL-lik 99.6 1.4E-15 4.8E-20 167.7 15.6 120 378-501 10-134 (549)
70 3rfs_A Internalin B, repeat mo 99.6 9.3E-16 3.2E-20 152.9 12.7 105 391-499 37-142 (272)
71 3g06_A SSPH2 (leucine-rich rep 99.6 5.9E-16 2E-20 171.2 11.2 107 377-499 44-150 (622)
72 1ziw_A TOLL-like receptor 3; i 99.6 8.3E-16 2.8E-20 174.1 11.5 122 376-499 28-154 (680)
73 1h6t_A Internalin B; cell adhe 99.6 1.1E-15 3.8E-20 153.8 11.0 172 388-612 39-210 (291)
74 2o6q_A Variable lymphocyte rec 99.6 1.5E-15 5E-20 151.3 11.6 196 396-638 17-215 (270)
75 1h6u_A Internalin H; cell adhe 99.6 2.1E-15 7.1E-20 153.2 12.8 191 375-595 43-233 (308)
76 1wwl_A Monocyte differentiatio 99.6 4E-16 1.4E-20 158.9 6.9 202 393-613 93-307 (312)
77 3rfs_A Internalin B, repeat mo 99.6 1.4E-15 4.9E-20 151.5 10.4 202 375-628 43-246 (272)
78 2ast_B S-phase kinase-associat 99.6 1.2E-15 4.3E-20 157.0 9.8 203 395-612 70-282 (336)
79 3m19_A Variable lymphocyte rec 99.6 4.2E-15 1.4E-19 146.3 11.8 97 398-498 17-115 (251)
80 4ay9_X Follicle-stimulating ho 99.6 3.2E-15 1.1E-19 154.8 10.8 238 376-636 12-254 (350)
81 2xwt_C Thyrotropin receptor; s 99.6 2E-15 6.7E-20 147.5 8.6 208 401-637 17-235 (239)
82 1m9s_A Internalin B; cell inva 99.6 2.2E-15 7.4E-20 166.4 10.0 171 389-612 37-207 (605)
83 2z63_A TOLL-like receptor 4, v 99.6 3.6E-15 1.2E-19 165.2 11.2 202 393-613 323-529 (570)
84 1p9a_G Platelet glycoprotein I 99.6 6.8E-15 2.3E-19 148.0 11.0 151 374-541 32-185 (290)
85 2ca6_A RAN GTPase-activating p 99.6 1.7E-15 6E-20 159.1 6.3 232 391-638 28-313 (386)
86 1jl5_A Outer protein YOPM; leu 99.6 1.2E-14 4.2E-19 155.6 12.7 114 375-499 133-246 (454)
87 4glp_A Monocyte differentiatio 99.6 7.8E-15 2.7E-19 149.2 10.2 225 395-640 64-306 (310)
88 2ast_B S-phase kinase-associat 99.5 3.2E-15 1.1E-19 153.9 5.6 223 397-638 49-282 (336)
89 3cvr_A Invasion plasmid antige 99.5 2.1E-14 7.1E-19 156.9 10.6 189 377-630 63-256 (571)
90 4glp_A Monocyte differentiatio 99.5 7.4E-15 2.5E-19 149.4 5.0 201 393-613 89-305 (310)
91 1jl5_A Outer protein YOPM; leu 99.5 6.8E-15 2.3E-19 157.6 3.7 174 395-589 11-205 (454)
92 3m19_A Variable lymphocyte rec 99.5 1.9E-13 6.6E-18 134.3 13.5 175 376-594 17-194 (251)
93 1xeu_A Internalin C; cellular 99.5 1.3E-14 4.3E-19 143.7 4.7 165 394-612 18-182 (263)
94 1h6t_A Internalin B; cell adhe 99.5 1.4E-13 4.7E-18 138.5 10.9 145 375-542 48-192 (291)
95 4ezg_A Putative uncharacterize 99.4 2.6E-13 8.9E-18 128.1 11.1 37 575-612 155-191 (197)
96 2v9t_B SLIT homolog 2 protein 99.4 3.5E-13 1.2E-17 129.5 11.8 97 399-499 15-113 (220)
97 1m9s_A Internalin B; cell inva 99.4 1.7E-13 5.8E-18 151.3 9.5 144 376-542 46-189 (605)
98 4ay9_X Follicle-stimulating ho 99.4 1.4E-13 4.9E-18 142.3 8.4 215 398-634 12-232 (350)
99 2v9t_B SLIT homolog 2 protein 99.4 7.1E-13 2.4E-17 127.4 11.7 149 375-540 13-164 (220)
100 4ezg_A Putative uncharacterize 99.4 8.7E-13 3E-17 124.4 12.2 147 376-541 47-194 (197)
101 2ca6_A RAN GTPase-activating p 99.4 4.3E-14 1.5E-18 148.5 3.3 225 401-640 15-286 (386)
102 2xot_A Amphoterin-induced prot 99.4 4E-13 1.4E-17 139.6 10.5 174 398-613 21-200 (361)
103 2o6s_A Variable lymphocyte rec 99.4 4.7E-13 1.6E-17 127.5 9.7 120 377-499 11-133 (208)
104 2v70_A SLIT-2, SLIT homolog 2 99.4 1.6E-12 5.3E-17 125.0 13.2 98 398-499 14-114 (220)
105 2o6s_A Variable lymphocyte rec 99.4 6.2E-13 2.1E-17 126.7 9.3 178 398-628 10-189 (208)
106 1z7x_W Ribonuclease inhibitor; 99.4 1.7E-13 5.8E-18 147.5 6.0 83 392-475 25-123 (461)
107 3e6j_A Variable lymphocyte rec 99.4 2.9E-12 9.8E-17 123.9 13.8 95 400-498 24-120 (229)
108 3e6j_A Variable lymphocyte rec 99.4 2E-12 6.8E-17 125.1 11.1 147 377-541 23-172 (229)
109 3goz_A Leucine-rich repeat-con 99.4 3.3E-13 1.1E-17 140.3 5.9 205 395-612 22-263 (362)
110 2v70_A SLIT-2, SLIT homolog 2 99.4 2E-12 6.8E-17 124.2 10.4 149 376-541 14-166 (220)
111 3cvr_A Invasion plasmid antige 99.3 1.1E-12 3.9E-17 143.2 9.2 172 374-602 81-254 (571)
112 1z7x_W Ribonuclease inhibitor; 99.3 1.1E-12 3.8E-17 141.1 8.9 157 390-563 108-293 (461)
113 4g8a_A TOLL-like receptor 4; l 99.3 1.5E-12 5.2E-17 145.8 10.0 223 387-627 363-592 (635)
114 1dce_A Protein (RAB geranylger 99.3 6.7E-15 2.3E-19 161.5 -9.7 101 525-633 460-565 (567)
115 3goz_A Leucine-rich repeat-con 99.3 8E-13 2.7E-17 137.4 6.1 222 400-636 3-261 (362)
116 2ell_A Acidic leucine-rich nuc 99.3 3.4E-12 1.2E-16 116.9 9.2 134 394-541 23-160 (168)
117 1xeu_A Internalin C; cellular 99.3 9.7E-12 3.3E-16 122.9 12.7 142 376-541 44-185 (263)
118 1a9n_A U2A', U2A'; complex (nu 99.3 3.6E-12 1.2E-16 117.8 8.4 141 388-543 12-155 (176)
119 2je0_A Acidic leucine-rich nuc 99.3 3.8E-12 1.3E-16 114.1 7.1 127 394-535 16-147 (149)
120 2xot_A Amphoterin-induced prot 99.3 7.3E-12 2.5E-16 130.0 10.1 154 376-543 21-178 (361)
121 4b8c_D Glucose-repressible alc 99.3 2.5E-12 8.6E-17 145.5 6.8 82 414-498 220-301 (727)
122 3ogk_B Coronatine-insensitive 99.3 2.7E-11 9.4E-16 134.6 13.9 13 625-637 485-497 (592)
123 3ogk_B Coronatine-insensitive 99.2 2.2E-11 7.5E-16 135.3 11.7 79 418-498 270-350 (592)
124 1w8a_A SLIT protein; signaling 99.2 1.3E-11 4.4E-16 115.8 7.7 125 398-540 11-138 (192)
125 2ell_A Acidic leucine-rich nuc 99.2 3.8E-11 1.3E-15 109.9 10.7 125 375-502 26-159 (168)
126 2wfh_A SLIT homolog 2 protein 99.2 3.6E-11 1.2E-15 112.7 10.1 123 399-539 14-137 (193)
127 1a9n_A U2A', U2A'; complex (nu 99.2 2.7E-11 9.4E-16 111.8 9.0 124 375-501 21-151 (176)
128 2wfh_A SLIT homolog 2 protein 99.2 5.1E-11 1.8E-15 111.7 10.5 121 376-499 13-135 (193)
129 2je0_A Acidic leucine-rich nuc 99.2 2.9E-11 1E-15 108.3 8.4 121 375-498 19-148 (149)
130 1dce_A Protein (RAB geranylger 99.2 4.2E-11 1.4E-15 131.4 9.4 123 396-534 442-566 (567)
131 2qen_A Walker-type ATPase; unk 99.2 3.3E-10 1.1E-14 116.8 15.2 263 76-365 12-339 (350)
132 1w8a_A SLIT protein; signaling 99.1 1.2E-10 3.9E-15 109.3 9.5 121 376-499 11-135 (192)
133 1w5s_A Origin recognition comp 99.1 7.4E-10 2.5E-14 117.1 16.8 267 76-358 22-371 (412)
134 2p1m_B Transport inhibitor res 99.1 1.6E-10 5.6E-15 128.3 11.7 81 393-473 154-243 (594)
135 2o6r_A Variable lymphocyte rec 99.1 2.4E-10 8.2E-15 105.5 10.8 118 378-498 12-132 (177)
136 4b8c_D Glucose-repressible alc 99.1 5.8E-11 2E-15 134.4 7.6 113 390-508 219-331 (727)
137 1ds9_A Outer arm dynein; leuci 99.1 1.2E-11 4E-16 116.7 -0.9 63 434-499 40-102 (198)
138 2o6r_A Variable lymphocyte rec 99.0 5.8E-10 2E-14 102.9 10.1 127 397-541 9-137 (177)
139 2fna_A Conserved hypothetical 99.0 2.4E-09 8.3E-14 110.6 15.8 262 76-365 13-347 (357)
140 2p1m_B Transport inhibitor res 99.0 1.3E-10 4.3E-15 129.2 6.1 109 521-631 389-534 (594)
141 1ds9_A Outer arm dynein; leuci 99.0 7.4E-12 2.5E-16 118.1 -3.6 79 415-498 45-123 (198)
142 2r9u_A Variable lymphocyte rec 99.0 9.4E-10 3.2E-14 101.1 9.6 98 398-499 15-114 (174)
143 3g39_A Variable lymphocyte rec 99.0 1.4E-09 4.7E-14 99.6 9.4 98 398-499 12-111 (170)
144 2r9u_A Variable lymphocyte rec 98.9 2.8E-09 9.5E-14 97.9 8.9 106 375-483 14-122 (174)
145 3sb4_A Hypothetical leucine ri 98.9 2.5E-09 8.4E-14 109.3 7.2 99 394-498 48-156 (329)
146 3g39_A Variable lymphocyte rec 98.8 5.1E-09 1.7E-13 95.8 8.2 105 419-541 10-115 (170)
147 2qby_B CDC6 homolog 3, cell di 98.8 2.7E-07 9.2E-12 96.2 20.0 256 76-358 20-339 (384)
148 3sb4_A Hypothetical leucine ri 98.7 1.1E-08 3.6E-13 104.6 5.8 108 394-513 24-144 (329)
149 2ifg_A High affinity nerve gro 98.7 3.1E-08 1.1E-12 101.9 9.1 97 378-475 13-113 (347)
150 2v1u_A Cell division control p 98.7 1.9E-07 6.5E-12 97.4 15.1 262 76-358 19-351 (387)
151 4fdw_A Leucine rich hypothetic 98.6 2.8E-07 9.6E-12 96.4 14.3 204 391-612 132-355 (401)
152 2ifg_A High affinity nerve gro 98.6 6.9E-08 2.4E-12 99.3 9.0 98 399-500 12-113 (347)
153 4fdw_A Leucine rich hypothetic 98.6 2.5E-07 8.5E-12 96.8 12.1 200 390-612 175-380 (401)
154 1fnn_A CDC6P, cell division co 98.6 1.5E-06 5.3E-11 90.6 17.7 263 76-358 17-351 (389)
155 2qby_A CDC6 homolog 1, cell di 98.5 4.4E-07 1.5E-11 94.5 11.5 262 76-357 20-347 (386)
156 3un9_A NLR family member X1; l 98.5 5.6E-08 1.9E-12 100.7 3.3 102 395-499 72-192 (372)
157 2ra8_A Uncharacterized protein 98.2 3.3E-06 1.1E-10 86.7 8.3 95 434-541 164-265 (362)
158 3un9_A NLR family member X1; l 98.1 5.1E-07 1.7E-11 93.5 1.8 135 395-542 101-253 (372)
159 1njg_A DNA polymerase III subu 98.1 6.8E-06 2.3E-10 79.2 8.5 36 76-111 23-59 (250)
160 2chg_A Replication factor C sm 98.0 1.2E-05 4E-10 76.4 7.9 113 76-205 17-143 (226)
161 1hqc_A RUVB; extended AAA-ATPa 98.0 1.1E-05 3.8E-10 81.7 7.8 37 75-111 11-52 (324)
162 2ra8_A Uncharacterized protein 97.8 2.2E-05 7.4E-10 80.6 6.2 176 392-612 136-340 (362)
163 3rw6_A Nuclear RNA export fact 97.7 5E-06 1.7E-10 81.0 0.5 81 415-497 167-258 (267)
164 1sxj_B Activator 1 37 kDa subu 97.7 8.6E-05 3E-09 75.0 9.3 36 76-111 21-56 (323)
165 3e4g_A ATP synthase subunit S, 97.6 8.8E-05 3E-09 66.9 6.4 64 438-501 81-150 (176)
166 3e4g_A ATP synthase subunit S, 97.5 0.00011 3.9E-09 66.2 6.4 84 442-538 61-149 (176)
167 1io0_A Tropomodulin; LRR prote 97.4 5.3E-05 1.8E-09 69.8 3.0 95 438-542 61-165 (185)
168 3rw6_A Nuclear RNA export fact 97.3 9.8E-05 3.3E-09 71.8 2.9 78 393-472 168-258 (267)
169 1io0_A Tropomodulin; LRR prote 97.3 0.00017 5.7E-09 66.4 4.4 106 391-499 32-160 (185)
170 1jbk_A CLPB protein; beta barr 97.3 0.00027 9.2E-09 65.0 5.7 36 76-111 22-57 (195)
171 3te6_A Regulatory protein SIR3 97.2 0.00089 3E-08 66.7 9.4 99 78-178 22-144 (318)
172 4fs7_A Uncharacterized protein 97.1 0.0039 1.3E-07 64.8 13.6 103 390-497 66-192 (394)
173 4fs7_A Uncharacterized protein 97.0 0.0023 7.9E-08 66.5 10.8 205 390-611 157-375 (394)
174 4gt6_A Cell surface protein; l 97.0 0.0049 1.7E-07 63.9 12.6 35 575-611 330-366 (394)
175 1iqp_A RFCS; clamp loader, ext 97.0 0.00037 1.3E-08 70.4 3.7 36 76-111 25-60 (327)
176 1jr3_A DNA polymerase III subu 96.8 0.0034 1.1E-07 64.6 9.3 36 76-111 16-52 (373)
177 2p65_A Hypothetical protein PF 96.7 0.003 1E-07 57.5 7.6 36 76-111 22-57 (187)
178 2chq_A Replication factor C sm 96.7 0.0015 5E-08 65.6 5.8 36 76-111 17-52 (319)
179 4gt6_A Cell surface protein; l 96.5 0.016 5.5E-07 60.0 12.2 58 574-636 306-365 (394)
180 4h09_A Hypothetical leucine ri 96.4 0.039 1.4E-06 56.6 14.7 58 575-635 282-340 (379)
181 3h4m_A Proteasome-activating n 96.3 0.0044 1.5E-07 61.1 5.8 36 76-111 17-65 (285)
182 1d2n_A N-ethylmaleimide-sensit 96.2 0.019 6.5E-07 56.0 10.1 36 76-111 33-78 (272)
183 3u61_B DNA polymerase accessor 95.8 0.0049 1.7E-07 62.0 3.8 36 76-111 26-62 (324)
184 3syl_A Protein CBBX; photosynt 95.6 0.011 3.9E-07 58.8 5.5 35 77-111 32-81 (309)
185 3bos_A Putative DNA replicatio 95.5 0.0041 1.4E-07 59.3 1.7 36 76-111 28-66 (242)
186 3rfe_A Platelet glycoprotein I 95.3 0.021 7.3E-07 48.7 5.5 51 422-475 12-65 (130)
187 1sxj_D Activator 1 41 kDa subu 95.3 0.0087 3E-07 60.9 3.6 36 76-111 37-72 (353)
188 1sxj_E Activator 1 40 kDa subu 95.3 0.026 8.9E-07 57.4 7.1 36 76-111 14-50 (354)
189 3pvs_A Replication-associated 95.2 0.036 1.2E-06 58.2 8.1 36 76-111 26-64 (447)
190 3n70_A Transport activator; si 95.2 0.0068 2.3E-07 52.9 2.0 35 77-111 2-38 (145)
191 2qz4_A Paraplegin; AAA+, SPG7, 95.0 0.066 2.3E-06 51.6 8.8 36 76-111 6-53 (262)
192 3d8b_A Fidgetin-like protein 1 95.0 0.039 1.3E-06 56.2 7.3 36 76-111 84-131 (357)
193 1xwi_A SKD1 protein; VPS4B, AA 94.9 0.065 2.2E-06 53.7 8.4 36 76-111 12-59 (322)
194 3ec2_A DNA replication protein 94.9 0.019 6.4E-07 52.1 4.1 30 82-111 20-52 (180)
195 3pxg_A Negative regulator of g 94.9 0.11 3.7E-06 55.0 10.5 36 76-111 180-215 (468)
196 3eie_A Vacuolar protein sortin 94.8 0.054 1.8E-06 54.3 7.7 36 76-111 18-65 (322)
197 3vfd_A Spastin; ATPase, microt 94.7 0.082 2.8E-06 54.5 8.9 36 76-111 115-162 (389)
198 4h09_A Hypothetical leucine ri 94.4 0.067 2.3E-06 54.9 7.5 58 438-497 259-317 (379)
199 2qp9_X Vacuolar protein sortin 94.3 0.072 2.5E-06 54.2 7.3 36 76-111 51-98 (355)
200 3rfe_A Platelet glycoprotein I 94.3 0.052 1.8E-06 46.2 5.3 52 445-499 11-64 (130)
201 2r62_A Cell division protease 94.2 0.063 2.1E-06 52.1 6.5 36 76-111 11-58 (268)
202 1r6b_X CLPA protein; AAA+, N-t 94.0 0.12 3.9E-06 58.6 8.9 36 76-111 186-221 (758)
203 3pxi_A Negative regulator of g 94.0 0.23 7.8E-06 56.1 11.3 36 76-111 180-215 (758)
204 2w58_A DNAI, primosome compone 93.7 0.067 2.3E-06 49.3 5.4 36 76-111 25-68 (202)
205 1sxj_A Activator 1 95 kDa subu 93.7 0.057 1.9E-06 58.0 5.4 36 76-111 39-91 (516)
206 3cf0_A Transitional endoplasmi 93.6 0.15 5.2E-06 50.4 8.0 36 76-111 15-63 (301)
207 1qvr_A CLPB protein; coiled co 93.6 0.11 3.7E-06 59.6 7.8 36 76-111 170-205 (854)
208 2zan_A Vacuolar protein sortin 93.5 0.13 4.5E-06 53.9 7.8 36 76-111 134-181 (444)
209 3b9p_A CG5977-PA, isoform A; A 93.4 0.18 6.2E-06 49.6 8.3 36 76-111 21-68 (297)
210 1sxj_C Activator 1 40 kDa subu 93.3 0.099 3.4E-06 52.8 6.1 36 76-111 25-60 (340)
211 3qfl_A MLA10; coiled-coil, (CC 93.1 0.084 2.9E-06 43.8 4.3 22 1-22 64-85 (115)
212 3uk6_A RUVB-like 2; hexameric 92.9 0.12 4.1E-06 52.7 6.1 36 76-111 44-84 (368)
213 3pfi_A Holliday junction ATP-d 92.8 0.13 4.3E-06 51.8 6.1 36 76-111 29-69 (338)
214 2gno_A DNA polymerase III, gam 92.5 0.16 5.6E-06 50.2 6.3 32 80-111 1-32 (305)
215 2z4s_A Chromosomal replication 92.0 0.083 2.9E-06 55.4 3.6 110 77-203 106-236 (440)
216 4b4t_L 26S protease subunit RP 91.3 0.49 1.7E-05 49.1 8.4 34 78-111 183-229 (437)
217 1pgv_A TMD-1, tropomodulin TMD 90.9 0.18 6.3E-06 46.0 4.2 116 418-541 41-170 (197)
218 1lv7_A FTSH; alpha/beta domain 90.9 0.69 2.4E-05 44.2 8.7 36 76-111 12-59 (257)
219 4b4t_J 26S protease regulatory 90.8 0.56 1.9E-05 47.9 8.1 34 78-111 150-196 (405)
220 4b4t_M 26S protease regulatory 90.5 0.45 1.5E-05 49.3 7.2 35 77-111 182-229 (434)
221 4b4t_H 26S protease regulatory 90.2 0.71 2.4E-05 47.9 8.3 35 77-111 210-257 (467)
222 1a5t_A Delta prime, HOLB; zinc 90.2 0.52 1.8E-05 47.3 7.3 30 82-111 8-38 (334)
223 4b4t_K 26S protease regulatory 89.9 0.58 2E-05 48.4 7.5 35 77-111 173-220 (428)
224 2vhj_A Ntpase P4, P4; non- hyd 89.7 0.1 3.6E-06 51.5 1.6 62 97-177 123-193 (331)
225 3t15_A Ribulose bisphosphate c 88.8 0.38 1.3E-05 47.2 4.9 16 96-111 35-50 (293)
226 4b4t_I 26S protease regulatory 88.7 0.88 3E-05 46.7 7.6 34 78-111 184-230 (437)
227 3hu3_A Transitional endoplasmi 86.6 0.94 3.2E-05 47.9 6.6 36 76-111 204-252 (489)
228 3co5_A Putative two-component 86.5 0.27 9.4E-06 42.4 2.0 35 77-111 5-41 (143)
229 1l8q_A Chromosomal replication 86.2 0.9 3.1E-05 45.2 6.1 36 76-111 11-51 (324)
230 1xp8_A RECA protein, recombina 86.0 1.4 4.7E-05 44.7 7.2 77 96-177 73-163 (366)
231 3hr8_A Protein RECA; alpha and 85.9 1.4 4.6E-05 44.4 7.1 78 96-178 60-151 (356)
232 1u94_A RECA protein, recombina 85.6 1.2 4.1E-05 44.9 6.6 76 96-176 62-151 (356)
233 3fwy_A Light-independent proto 85.4 0.24 8.2E-06 49.2 1.2 17 95-111 46-62 (314)
234 2cvh_A DNA repair and recombin 85.1 1.1 3.6E-05 41.5 5.6 81 96-177 19-116 (220)
235 1v5w_A DMC1, meiotic recombina 84.6 2.1 7.2E-05 42.9 7.9 80 96-176 121-229 (343)
236 3cf2_A TER ATPase, transitiona 84.4 1.5 5.3E-05 49.0 7.2 34 78-111 206-252 (806)
237 2ce7_A Cell division protein F 84.3 1.9 6.5E-05 45.3 7.5 36 76-111 16-63 (476)
238 2c9o_A RUVB-like 1; hexameric 84.2 1.2 4E-05 46.8 6.0 36 76-111 37-77 (456)
239 1pgv_A TMD-1, tropomodulin TMD 84.1 0.36 1.2E-05 44.1 1.6 102 395-498 41-165 (197)
240 2x8a_A Nuclear valosin-contain 83.9 2.5 8.6E-05 40.8 7.8 36 76-111 10-58 (274)
241 2z43_A DNA repair and recombin 83.8 1.6 5.6E-05 43.3 6.6 80 96-176 106-213 (324)
242 1n0w_A DNA repair protein RAD5 83.7 1.5 5E-05 41.3 6.0 81 96-177 23-130 (243)
243 1ofh_A ATP-dependent HSL prote 81.3 0.78 2.7E-05 45.1 3.1 36 76-111 15-64 (310)
244 1rz3_A Hypothetical protein rb 81.0 0.86 2.9E-05 41.7 3.1 32 80-111 2-36 (201)
245 2zr9_A Protein RECA, recombina 80.9 2.9 9.9E-05 42.0 7.1 77 96-177 60-150 (349)
246 3io5_A Recombination and repai 80.6 3.2 0.00011 40.8 6.9 76 98-178 29-123 (333)
247 2dhr_A FTSH; AAA+ protein, hex 79.4 5.8 0.0002 41.8 9.1 36 76-111 31-78 (499)
248 2i1q_A DNA repair and recombin 78.8 2.2 7.5E-05 42.3 5.4 80 96-176 97-214 (322)
249 2hf9_A Probable hydrogenase ni 78.4 1.2 4E-05 41.5 3.1 30 82-111 23-52 (226)
250 1ypw_A Transitional endoplasmi 78.2 2.6 8.7E-05 47.7 6.3 36 76-111 204-252 (806)
251 2b8t_A Thymidine kinase; deoxy 77.9 0.37 1.3E-05 45.1 -0.6 103 96-204 11-126 (223)
252 2qgz_A Helicase loader, putati 77.4 1.7 5.7E-05 42.9 4.0 28 84-111 136-166 (308)
253 2wsm_A Hydrogenase expression/ 76.4 1.1 3.9E-05 41.4 2.4 32 80-111 13-44 (221)
254 2bjv_A PSP operon transcriptio 76.2 1.1 3.7E-05 43.0 2.3 36 76-111 6-43 (265)
255 4fcw_A Chaperone protein CLPB; 75.7 1.2 4E-05 43.9 2.3 36 76-111 17-61 (311)
256 3m6a_A ATP-dependent protease 75.4 5.2 0.00018 42.9 7.5 34 78-111 83-122 (543)
257 1g8p_A Magnesium-chelatase 38 73.1 1.9 6.4E-05 43.2 3.2 36 76-111 24-59 (350)
258 1g5t_A COB(I)alamin adenosyltr 72.5 0.54 1.8E-05 42.8 -0.9 49 156-204 109-163 (196)
259 1ojl_A Transcriptional regulat 72.4 1.7 5.8E-05 42.8 2.6 36 76-111 2-39 (304)
260 1in4_A RUVB, holliday junction 71.9 1.7 5.8E-05 43.4 2.5 36 76-111 25-65 (334)
261 2r44_A Uncharacterized protein 71.0 1.6 5.5E-05 43.4 2.1 34 76-111 27-60 (331)
262 3dm5_A SRP54, signal recogniti 70.2 13 0.00044 38.4 8.7 16 96-111 99-114 (443)
263 3c8u_A Fructokinase; YP_612366 70.2 2.4 8.3E-05 38.9 3.0 28 84-111 7-36 (208)
264 2ffh_A Protein (FFH); SRP54, s 69.7 9.5 0.00032 39.2 7.5 15 97-111 98-112 (425)
265 3lw7_A Adenylate kinase relate 69.7 1.3 4.3E-05 39.1 0.9 14 98-111 2-15 (179)
266 2px0_A Flagellar biosynthesis 69.4 9 0.00031 37.3 7.1 16 96-111 104-119 (296)
267 2w0m_A SSO2452; RECA, SSPF, un 69.4 8.1 0.00028 35.6 6.6 15 97-111 23-37 (235)
268 3lda_A DNA repair protein RAD5 69.0 8.7 0.0003 39.2 7.1 80 96-176 177-283 (400)
269 2ga8_A Hypothetical 39.9 kDa p 68.6 2.8 9.7E-05 41.9 3.2 33 79-111 2-38 (359)
270 3nbx_X ATPase RAVA; AAA+ ATPas 68.4 3 0.0001 44.1 3.6 34 76-111 22-55 (500)
271 1j8m_F SRP54, signal recogniti 67.9 18 0.0006 35.2 8.8 79 97-175 98-189 (297)
272 2ck3_D ATP synthase subunit be 67.7 16 0.00053 38.0 8.6 91 87-177 142-264 (482)
273 3ice_A Transcription terminati 67.0 11 0.00039 38.0 7.1 86 88-177 164-272 (422)
274 3bh0_A DNAB-like replicative h 66.1 20 0.00067 35.2 8.8 41 96-139 67-118 (315)
275 3kl4_A SRP54, signal recogniti 65.9 18 0.00062 37.2 8.7 15 97-111 97-111 (433)
276 3end_A Light-independent proto 65.6 1.9 6.4E-05 42.4 1.2 18 94-111 38-55 (307)
277 2kjq_A DNAA-related protein; s 65.2 3.7 0.00013 35.4 2.9 16 96-111 35-50 (149)
278 1vma_A Cell division protein F 64.1 14 0.00047 36.2 7.1 80 96-176 103-196 (306)
279 3kb2_A SPBC2 prophage-derived 63.9 2 6.8E-05 37.8 0.9 14 98-111 2-15 (173)
280 2xxa_A Signal recognition part 63.6 17 0.00057 37.6 8.0 16 96-111 99-114 (433)
281 3p32_A Probable GTPase RV1496/ 63.5 3.9 0.00013 41.1 3.2 27 85-111 65-93 (355)
282 1fx0_B ATP synthase beta chain 63.0 13 0.00044 38.8 6.9 90 88-177 155-277 (498)
283 1qhx_A CPT, protein (chloramph 62.9 2.1 7.1E-05 38.0 0.9 14 98-111 4-17 (178)
284 1pzn_A RAD51, DNA repair and r 62.8 8.7 0.0003 38.4 5.6 81 96-177 130-242 (349)
285 3cf2_A TER ATPase, transitiona 62.8 12 0.0004 42.0 7.0 36 76-111 477-525 (806)
286 3e70_C DPA, signal recognition 62.5 24 0.00082 34.8 8.7 16 96-111 128-143 (328)
287 4akg_A Glutathione S-transfera 62.3 16 0.00056 46.6 8.9 81 87-177 1258-1347(2695)
288 1ixz_A ATP-dependent metallopr 61.5 5.6 0.00019 37.6 3.8 36 76-111 16-63 (254)
289 1zp6_A Hypothetical protein AT 61.4 2.3 7.9E-05 38.2 0.9 15 97-111 9-23 (191)
290 3cmu_A Protein RECA, recombina 61.1 10 0.00034 46.9 6.5 76 96-176 1426-1515(2050)
291 3vaa_A Shikimate kinase, SK; s 60.4 2.6 9E-05 38.3 1.1 16 96-111 24-39 (199)
292 3l0o_A Transcription terminati 60.3 30 0.001 35.0 8.7 25 87-111 164-189 (427)
293 1kgd_A CASK, peripheral plasma 60.1 2.5 8.6E-05 37.7 0.9 14 98-111 6-19 (180)
294 1ly1_A Polynucleotide kinase; 60.0 2.6 8.8E-05 37.3 1.0 14 98-111 3-16 (181)
295 3hws_A ATP-dependent CLP prote 60.0 3.5 0.00012 41.6 2.1 34 78-111 17-65 (363)
296 3llm_A ATP-dependent RNA helic 60.0 16 0.00055 33.9 6.7 91 85-178 66-188 (235)
297 1ex7_A Guanylate kinase; subst 59.9 0.96 3.3E-05 40.9 -1.9 14 98-111 2-15 (186)
298 2qt1_A Nicotinamide riboside k 59.8 3.9 0.00013 37.3 2.2 29 96-124 20-54 (207)
299 1y63_A LMAJ004144AAA protein; 59.4 2.8 9.5E-05 37.5 1.1 15 97-111 10-24 (184)
300 1kag_A SKI, shikimate kinase I 59.2 2.2 7.4E-05 37.6 0.3 14 98-111 5-18 (173)
301 2yvu_A Probable adenylyl-sulfa 58.8 2.7 9.3E-05 37.6 0.9 16 96-111 12-27 (186)
302 1jjv_A Dephospho-COA kinase; P 58.7 2.7 9.1E-05 38.4 0.8 14 98-111 3-16 (206)
303 1odf_A YGR205W, hypothetical 3 58.3 5.7 0.0002 38.6 3.2 17 95-111 29-45 (290)
304 3trf_A Shikimate kinase, SK; a 58.2 2.8 9.6E-05 37.4 0.9 15 97-111 5-19 (185)
305 1zuh_A Shikimate kinase; alpha 58.0 2.9 9.8E-05 36.7 0.9 15 97-111 7-21 (168)
306 1um8_A ATP-dependent CLP prote 57.6 5.3 0.00018 40.4 3.0 36 76-111 21-86 (376)
307 2vli_A Antibiotic resistance p 57.5 3.9 0.00013 36.3 1.7 15 97-111 5-19 (183)
308 1uj2_A Uridine-cytidine kinase 57.3 3.3 0.00011 39.3 1.2 17 95-111 20-36 (252)
309 1knq_A Gluconate kinase; ALFA/ 56.9 3.1 0.00011 36.7 1.0 15 97-111 8-22 (175)
310 1uf9_A TT1252 protein; P-loop, 56.9 3.5 0.00012 37.3 1.3 17 95-111 6-22 (203)
311 3iij_A Coilin-interacting nucl 56.9 2.7 9.3E-05 37.3 0.6 15 97-111 11-25 (180)
312 2grj_A Dephospho-COA kinase; T 56.8 3 0.0001 37.8 0.9 16 96-111 11-26 (192)
313 2if2_A Dephospho-COA kinase; a 56.8 3 0.0001 37.9 0.8 14 98-111 2-15 (204)
314 4eun_A Thermoresistant glucoki 56.6 3.3 0.00011 37.6 1.1 17 95-111 27-43 (200)
315 3uie_A Adenylyl-sulfate kinase 56.5 4.7 0.00016 36.6 2.1 18 94-111 22-39 (200)
316 1iy2_A ATP-dependent metallopr 56.3 8 0.00027 37.1 3.9 36 76-111 40-87 (278)
317 4gp7_A Metallophosphoesterase; 56.0 3.3 0.00011 36.6 1.0 15 97-111 9-23 (171)
318 3a00_A Guanylate kinase, GMP k 55.9 2.7 9.3E-05 37.7 0.4 14 98-111 2-15 (186)
319 3tr0_A Guanylate kinase, GMP k 55.7 3.2 0.00011 37.6 0.9 15 97-111 7-21 (205)
320 1xjc_A MOBB protein homolog; s 55.6 3.4 0.00012 36.5 1.0 16 96-111 3-18 (169)
321 1jr3_D DNA polymerase III, del 55.5 56 0.0019 32.1 10.2 39 164-202 74-115 (343)
322 2rhm_A Putative kinase; P-loop 54.9 3.8 0.00013 36.7 1.2 15 97-111 5-19 (193)
323 2j37_W Signal recognition part 54.6 43 0.0015 35.2 9.4 16 96-111 100-115 (504)
324 3tau_A Guanylate kinase, GMP k 54.6 3.5 0.00012 37.8 0.9 16 96-111 7-22 (208)
325 2j41_A Guanylate kinase; GMP, 54.5 3.5 0.00012 37.5 0.9 15 97-111 6-20 (207)
326 2qor_A Guanylate kinase; phosp 54.5 3.1 0.00011 37.9 0.5 16 96-111 11-26 (204)
327 2bdt_A BH3686; alpha-beta prot 54.4 3.7 0.00012 36.8 1.0 14 98-111 3-16 (189)
328 1kht_A Adenylate kinase; phosp 54.4 3.5 0.00012 36.8 0.9 14 98-111 4-17 (192)
329 1ukz_A Uridylate kinase; trans 54.3 3.9 0.00013 37.1 1.2 16 96-111 14-29 (203)
330 1gvn_B Zeta; postsegregational 53.9 8.8 0.0003 37.2 3.7 16 96-111 32-47 (287)
331 2c95_A Adenylate kinase 1; tra 53.9 3.8 0.00013 36.8 1.1 16 96-111 8-23 (196)
332 1sky_E F1-ATPase, F1-ATP synth 53.7 19 0.00065 37.4 6.3 80 98-177 152-256 (473)
333 2p5t_B PEZT; postsegregational 53.4 8.4 0.00029 36.4 3.4 16 96-111 31-46 (253)
334 1cke_A CK, MSSA, protein (cyti 53.4 3.7 0.00013 38.0 0.9 14 98-111 6-19 (227)
335 1nks_A Adenylate kinase; therm 53.1 3.8 0.00013 36.6 0.9 14 98-111 2-15 (194)
336 1tue_A Replication protein E1; 52.8 6.6 0.00023 35.9 2.4 28 84-111 44-72 (212)
337 1lvg_A Guanylate kinase, GMP k 52.8 3.2 0.00011 37.7 0.3 14 98-111 5-18 (198)
338 2iyv_A Shikimate kinase, SK; t 52.3 3.1 0.0001 37.1 0.1 14 98-111 3-16 (184)
339 3lnc_A Guanylate kinase, GMP k 51.8 5.2 0.00018 37.2 1.6 15 97-111 27-41 (231)
340 3t61_A Gluconokinase; PSI-biol 51.7 3.3 0.00011 37.6 0.2 15 97-111 18-32 (202)
341 3tlx_A Adenylate kinase 2; str 51.6 8.7 0.0003 36.1 3.2 32 80-111 10-43 (243)
342 3a4m_A L-seryl-tRNA(SEC) kinas 51.5 4.6 0.00016 38.5 1.2 15 97-111 4-18 (260)
343 1qf9_A UMP/CMP kinase, protein 51.4 4.3 0.00015 36.3 0.9 15 97-111 6-20 (194)
344 3asz_A Uridine kinase; cytidin 51.3 4.7 0.00016 36.8 1.2 16 96-111 5-20 (211)
345 4b3f_X DNA-binding protein smu 51.3 14 0.00047 40.5 5.2 49 84-136 194-253 (646)
346 2bbw_A Adenylate kinase 4, AK4 51.0 4.6 0.00016 38.0 1.1 16 96-111 26-41 (246)
347 1e6c_A Shikimate kinase; phosp 51.0 3.6 0.00012 36.1 0.3 14 98-111 3-16 (173)
348 2afh_E Nitrogenase iron protei 51.0 4.6 0.00016 39.1 1.2 15 97-111 2-16 (289)
349 1tev_A UMP-CMP kinase; ploop, 51.0 4.5 0.00015 36.2 1.0 15 97-111 3-17 (196)
350 2f6r_A COA synthase, bifunctio 50.8 4.8 0.00016 38.9 1.2 16 96-111 74-89 (281)
351 3cm0_A Adenylate kinase; ATP-b 50.6 4.5 0.00016 36.0 1.0 14 98-111 5-18 (186)
352 2jaq_A Deoxyguanosine kinase; 50.6 4.3 0.00015 36.7 0.8 13 99-111 2-14 (205)
353 2bwj_A Adenylate kinase 5; pho 50.5 4.4 0.00015 36.5 0.8 15 97-111 12-26 (199)
354 2pt5_A Shikimate kinase, SK; a 50.1 4.5 0.00015 35.3 0.8 13 99-111 2-14 (168)
355 3tqc_A Pantothenate kinase; bi 49.9 8.2 0.00028 38.1 2.8 32 80-111 71-106 (321)
356 1cp2_A CP2, nitrogenase iron p 49.4 4.9 0.00017 38.4 1.0 14 98-111 2-15 (269)
357 1rj9_A FTSY, signal recognitio 48.6 5.4 0.00018 39.1 1.2 16 96-111 101-116 (304)
358 2pbr_A DTMP kinase, thymidylat 48.5 4.9 0.00017 35.9 0.8 13 99-111 2-14 (195)
359 3ch4_B Pmkase, phosphomevalona 48.4 5.1 0.00018 36.5 0.9 16 96-111 10-25 (202)
360 1ye8_A Protein THEP1, hypothet 48.1 5.1 0.00018 35.7 0.9 13 99-111 2-14 (178)
361 4dkx_A RAS-related protein RAB 48.0 7 0.00024 36.0 1.8 13 99-111 15-27 (216)
362 4e22_A Cytidylate kinase; P-lo 47.6 5.1 0.00018 38.0 0.9 16 96-111 26-41 (252)
363 2cdn_A Adenylate kinase; phosp 47.5 5.2 0.00018 36.2 0.9 15 97-111 20-34 (201)
364 1g41_A Heat shock protein HSLU 47.1 8.2 0.00028 39.9 2.3 36 76-111 15-64 (444)
365 1znw_A Guanylate kinase, GMP k 47.0 5.4 0.00019 36.4 0.9 16 96-111 19-34 (207)
366 3ney_A 55 kDa erythrocyte memb 46.9 5.9 0.0002 36.0 1.1 16 96-111 18-33 (197)
367 4gzl_A RAS-related C3 botulinu 46.8 5.7 0.0002 36.0 1.0 31 81-111 14-44 (204)
368 2ged_A SR-beta, signal recogni 46.8 10 0.00035 33.6 2.8 16 96-111 47-62 (193)
369 1vht_A Dephospho-COA kinase; s 46.8 5.4 0.00018 36.7 0.8 15 97-111 4-18 (218)
370 1fx0_A ATP synthase alpha chai 46.7 11 0.00037 39.5 3.1 81 97-177 163-266 (507)
371 2plr_A DTMP kinase, probable t 46.6 5.7 0.0002 36.1 1.0 14 98-111 5-18 (213)
372 1via_A Shikimate kinase; struc 46.4 4.6 0.00016 35.6 0.3 14 98-111 5-18 (175)
373 1yrb_A ATP(GTP)binding protein 46.4 6.2 0.00021 37.4 1.2 16 96-111 13-28 (262)
374 2qe7_A ATP synthase subunit al 46.4 39 0.0013 35.2 7.3 91 87-177 151-265 (502)
375 2pez_A Bifunctional 3'-phospho 45.8 6 0.00021 35.0 1.0 15 97-111 5-19 (179)
376 3umf_A Adenylate kinase; rossm 45.7 6.4 0.00022 36.4 1.1 16 96-111 28-43 (217)
377 1z6g_A Guanylate kinase; struc 45.7 4.8 0.00017 37.2 0.3 16 96-111 22-37 (218)
378 2r9v_A ATP synthase subunit al 45.6 39 0.0013 35.3 7.1 90 87-177 164-278 (515)
379 2v3c_C SRP54, signal recogniti 45.4 7.5 0.00025 40.2 1.7 15 97-111 99-113 (432)
380 3pxi_A Negative regulator of g 45.4 9.6 0.00033 42.7 2.8 36 76-111 491-535 (758)
381 3b85_A Phosphate starvation-in 45.4 8.7 0.0003 35.2 2.0 14 98-111 23-36 (208)
382 3cmu_A Protein RECA, recombina 45.3 28 0.00095 43.1 6.8 77 96-177 382-472 (2050)
383 1np6_A Molybdopterin-guanine d 45.1 6.3 0.00021 35.0 1.0 15 97-111 6-20 (174)
384 1nn5_A Similar to deoxythymidy 44.9 6.5 0.00022 35.8 1.1 15 97-111 9-23 (215)
385 2wwf_A Thymidilate kinase, put 44.9 6.5 0.00022 35.7 1.1 15 97-111 10-24 (212)
386 3io3_A DEHA2D07832P; chaperone 44.8 6.8 0.00023 39.2 1.3 20 92-111 13-32 (348)
387 2ze6_A Isopentenyl transferase 44.7 6.3 0.00022 37.4 1.0 14 98-111 2-15 (253)
388 1a7j_A Phosphoribulokinase; tr 44.6 8.6 0.00029 37.3 1.9 16 96-111 4-19 (290)
389 1zu4_A FTSY; GTPase, signal re 44.3 7.1 0.00024 38.5 1.3 16 96-111 104-119 (320)
390 1zd8_A GTP:AMP phosphotransfer 44.3 6.4 0.00022 36.5 0.9 15 97-111 7-21 (227)
391 1s96_A Guanylate kinase, GMP k 44.2 6.3 0.00022 36.5 0.9 16 96-111 15-30 (219)
392 3iqw_A Tail-anchored protein t 44.2 16 0.00055 36.2 3.9 20 92-111 11-30 (334)
393 3cmw_A Protein RECA, recombina 44.1 24 0.00083 42.9 6.0 78 96-178 382-473 (1706)
394 2v54_A DTMP kinase, thymidylat 44.0 6.4 0.00022 35.5 0.9 15 97-111 4-18 (204)
395 3nwj_A ATSK2; P loop, shikimat 44.0 5.3 0.00018 37.9 0.3 15 97-111 48-62 (250)
396 1ypw_A Transitional endoplasmi 43.9 9.6 0.00033 43.0 2.5 36 76-111 477-525 (806)
397 2wji_A Ferrous iron transport 43.9 6.5 0.00022 34.1 0.9 14 98-111 4-17 (165)
398 3upu_A ATP-dependent DNA helic 43.8 13 0.00045 38.7 3.4 26 85-111 34-59 (459)
399 3oaa_A ATP synthase subunit al 43.7 21 0.00071 37.3 4.7 89 88-177 152-265 (513)
400 3b9q_A Chloroplast SRP recepto 43.3 7.4 0.00025 38.0 1.2 15 97-111 100-114 (302)
401 1aky_A Adenylate kinase; ATP:A 43.3 7.2 0.00025 35.9 1.1 15 97-111 4-18 (220)
402 3ake_A Cytidylate kinase; CMP 43.0 6.8 0.00023 35.5 0.9 13 99-111 4-16 (208)
403 2yhs_A FTSY, cell division pro 42.6 13 0.00046 38.8 3.1 16 96-111 292-307 (503)
404 2www_A Methylmalonic aciduria 42.3 14 0.00047 37.0 3.1 15 97-111 74-88 (349)
405 2i3b_A HCR-ntpase, human cance 42.2 5.9 0.0002 35.7 0.3 14 98-111 2-15 (189)
406 3aez_A Pantothenate kinase; tr 42.2 8.1 0.00028 38.0 1.4 17 95-111 88-104 (312)
407 3cmw_A Protein RECA, recombina 42.2 27 0.00093 42.5 6.0 76 96-176 1430-1519(1706)
408 2z0h_A DTMP kinase, thymidylat 42.0 7.2 0.00024 34.9 0.9 13 99-111 2-14 (197)
409 1moz_A ARL1, ADP-ribosylation 41.9 9 0.00031 33.6 1.5 17 95-111 16-32 (183)
410 2dyk_A GTP-binding protein; GT 41.9 7.8 0.00027 33.1 1.1 14 98-111 2-15 (161)
411 1q57_A DNA primase/helicase; d 41.8 45 0.0016 35.0 7.3 41 97-139 242-293 (503)
412 3fb4_A Adenylate kinase; psych 41.7 7.3 0.00025 35.6 0.9 13 99-111 2-14 (216)
413 2jeo_A Uridine-cytidine kinase 41.6 8.6 0.00029 36.1 1.4 16 96-111 24-39 (245)
414 1tq4_A IIGP1, interferon-induc 41.6 12 0.0004 38.4 2.4 16 96-111 68-83 (413)
415 2q6t_A DNAB replication FORK h 41.5 59 0.002 33.4 8.0 42 96-139 199-251 (444)
416 1zj6_A ADP-ribosylation factor 41.3 14 0.00047 32.6 2.7 25 86-111 6-30 (187)
417 3f9v_A Minichromosome maintena 41.2 8 0.00027 41.9 1.2 36 76-111 295-341 (595)
418 1gtv_A TMK, thymidylate kinase 41.2 4.9 0.00017 36.7 -0.4 14 98-111 1-14 (214)
419 2f1r_A Molybdopterin-guanine d 41.1 4.9 0.00017 35.6 -0.4 14 98-111 3-16 (171)
420 1m7g_A Adenylylsulfate kinase; 41.1 7.9 0.00027 35.4 1.0 17 95-111 23-39 (211)
421 3dl0_A Adenylate kinase; phosp 41.0 7.6 0.00026 35.5 0.9 13 99-111 2-14 (216)
422 2zej_A Dardarin, leucine-rich 40.9 7 0.00024 34.6 0.6 13 99-111 4-16 (184)
423 2ehv_A Hypothetical protein PH 40.6 7.7 0.00026 36.3 0.9 16 96-111 29-44 (251)
424 3k1j_A LON protease, ATP-depen 40.2 13 0.00043 40.5 2.6 34 76-111 41-74 (604)
425 1oix_A RAS-related protein RAB 39.9 7.9 0.00027 34.6 0.8 15 97-111 29-43 (191)
426 1nij_A Hypothetical protein YJ 39.7 11 0.00037 37.2 1.8 16 96-111 3-18 (318)
427 3fkq_A NTRC-like two-domain pr 39.7 16 0.00055 36.8 3.2 32 80-111 114-158 (373)
428 1qvr_A CLPB protein; coiled co 39.6 11 0.00038 42.8 2.1 35 77-111 559-602 (854)
429 3tif_A Uncharacterized ABC tra 39.5 8.2 0.00028 36.1 0.9 16 96-111 30-45 (235)
430 1sq5_A Pantothenate kinase; P- 39.4 9.4 0.00032 37.4 1.3 17 95-111 78-94 (308)
431 1zak_A Adenylate kinase; ATP:A 39.2 7.5 0.00025 35.8 0.5 15 97-111 5-19 (222)
432 1r6b_X CLPA protein; AAA+, N-t 39.1 18 0.00061 40.5 3.7 36 76-111 458-502 (758)
433 1htw_A HI0065; nucleotide-bind 39.1 9 0.00031 33.3 1.0 17 95-111 31-47 (158)
434 1ls1_A Signal recognition part 38.9 9.2 0.00031 37.2 1.1 15 97-111 98-112 (295)
435 2f9l_A RAB11B, member RAS onco 38.8 7.9 0.00027 34.8 0.6 14 98-111 6-19 (199)
436 2pcj_A ABC transporter, lipopr 38.7 8.5 0.00029 35.7 0.8 16 96-111 29-44 (224)
437 2onk_A Molybdate/tungstate ABC 38.7 9.3 0.00032 35.9 1.1 16 95-111 23-38 (240)
438 4a74_A DNA repair and recombin 38.6 8.8 0.0003 35.3 0.9 16 96-111 24-39 (231)
439 3q85_A GTP-binding protein REM 38.5 8.1 0.00028 33.3 0.6 14 98-111 3-16 (169)
440 2wjg_A FEOB, ferrous iron tran 38.3 8.9 0.0003 33.9 0.9 14 98-111 8-21 (188)
441 3q72_A GTP-binding protein RAD 38.2 8.1 0.00028 33.2 0.6 13 99-111 4-16 (166)
442 2ce2_X GTPase HRAS; signaling 38.1 8.2 0.00028 33.0 0.6 13 99-111 5-17 (166)
443 2og2_A Putative signal recogni 38.1 10 0.00034 38.1 1.3 15 97-111 157-171 (359)
444 1z2a_A RAS-related protein RAB 38.0 8.4 0.00029 33.1 0.6 14 98-111 6-19 (168)
445 2nzj_A GTP-binding protein REM 37.9 8.4 0.00029 33.4 0.6 14 98-111 5-18 (175)
446 1p9r_A General secretion pathw 37.8 17 0.00059 37.2 3.0 19 93-111 163-181 (418)
447 1q3t_A Cytidylate kinase; nucl 37.5 10 0.00035 35.3 1.2 16 96-111 15-30 (236)
448 2ck3_A ATP synthase subunit al 37.4 25 0.00085 36.8 4.1 90 87-177 151-273 (510)
449 2cbz_A Multidrug resistance-as 37.3 9.5 0.00032 35.7 0.9 16 96-111 30-45 (237)
450 3cbq_A GTP-binding protein REM 37.3 8.7 0.0003 34.5 0.6 16 96-111 22-37 (195)
451 1c1y_A RAS-related protein RAP 36.9 8.9 0.00031 32.9 0.6 13 99-111 5-17 (167)
452 2fu5_C RAS-related protein RAB 36.8 12 0.0004 32.8 1.4 14 98-111 9-22 (183)
453 2fz4_A DNA repair protein RAD2 36.4 73 0.0025 29.4 7.0 12 100-111 111-122 (237)
454 1u8z_A RAS-related protein RAL 36.3 9.2 0.00032 32.7 0.6 14 98-111 5-18 (168)
455 1pui_A ENGB, probable GTP-bind 36.2 9.8 0.00033 34.4 0.8 16 96-111 25-40 (210)
456 2gj8_A MNME, tRNA modification 36.2 9.1 0.00031 33.5 0.6 14 98-111 5-18 (172)
457 3th5_A RAS-related C3 botulinu 42.5 7.5 0.00026 35.1 0.0 23 89-111 22-44 (204)
458 2pze_A Cystic fibrosis transme 36.0 10 0.00035 35.3 0.9 16 96-111 33-48 (229)
459 3con_A GTPase NRAS; structural 35.9 9.4 0.00032 33.8 0.6 14 98-111 22-35 (190)
460 1kao_A RAP2A; GTP-binding prot 35.8 9.5 0.00032 32.6 0.6 13 99-111 5-17 (167)
461 1b0u_A Histidine permease; ABC 35.8 10 0.00035 36.2 0.9 16 96-111 31-46 (262)
462 2eyu_A Twitching motility prot 35.7 11 0.00036 36.0 1.0 48 156-206 88-135 (261)
463 3be4_A Adenylate kinase; malar 35.7 10 0.00034 34.8 0.8 14 98-111 6-19 (217)
464 3gfo_A Cobalt import ATP-bindi 35.7 10 0.00035 36.5 0.9 16 96-111 33-48 (275)
465 3d3q_A TRNA delta(2)-isopenten 35.6 11 0.00036 37.5 1.0 14 98-111 8-21 (340)
466 1r8s_A ADP-ribosylation factor 35.6 9.6 0.00033 32.6 0.6 12 100-111 3-14 (164)
467 1e4v_A Adenylate kinase; trans 35.6 10 0.00035 34.7 0.8 13 99-111 2-14 (214)
468 1ji0_A ABC transporter; ATP bi 35.6 10 0.00035 35.5 0.9 16 96-111 31-46 (240)
469 1z08_A RAS-related protein RAB 35.5 9.6 0.00033 32.8 0.6 14 98-111 7-20 (170)
470 1puj_A YLQF, conserved hypothe 35.5 22 0.00075 34.2 3.2 33 79-111 91-134 (282)
471 1g6h_A High-affinity branched- 35.4 10 0.00036 35.9 0.9 16 96-111 32-47 (257)
472 4a1f_A DNAB helicase, replicat 35.3 33 0.0011 34.0 4.5 43 96-140 45-97 (338)
473 2xb4_A Adenylate kinase; ATP-b 35.3 10 0.00036 34.9 0.8 13 99-111 2-14 (223)
474 1mv5_A LMRA, multidrug resista 35.3 11 0.00037 35.4 1.0 16 96-111 27-42 (243)
475 1fzq_A ADP-ribosylation factor 35.3 13 0.00046 32.6 1.5 16 96-111 15-30 (181)
476 2erx_A GTP-binding protein DI- 35.2 9.8 0.00034 32.8 0.6 13 99-111 5-17 (172)
477 2lkc_A Translation initiation 35.2 12 0.00041 32.5 1.2 16 96-111 7-22 (178)
478 1m7b_A RND3/RHOE small GTP-bin 35.0 9.8 0.00033 33.6 0.6 14 98-111 8-21 (184)
479 1z0j_A RAB-22, RAS-related pro 35.0 10 0.00034 32.7 0.6 13 99-111 8-20 (170)
480 2p67_A LAO/AO transport system 34.9 12 0.00041 37.2 1.3 17 95-111 54-70 (341)
481 3r20_A Cytidylate kinase; stru 34.8 11 0.00037 35.2 0.9 15 97-111 9-23 (233)
482 1ek0_A Protein (GTP-binding pr 34.7 10 0.00035 32.6 0.6 13 99-111 5-17 (170)
483 1svi_A GTP-binding protein YSX 34.7 12 0.00041 33.2 1.2 16 96-111 22-37 (195)
484 3ihw_A Centg3; RAS, centaurin, 34.6 10 0.00035 33.6 0.6 14 98-111 21-34 (184)
485 1g16_A RAS-related protein SEC 34.4 10 0.00035 32.6 0.6 14 98-111 4-17 (170)
486 3ez9_A Para; DNA binding, wing 34.3 21 0.0007 36.4 3.0 17 95-111 109-126 (403)
487 3tw8_B RAS-related protein RAB 34.3 10 0.00035 33.0 0.6 15 97-111 9-23 (181)
488 2ff7_A Alpha-hemolysin translo 34.3 11 0.00038 35.5 0.9 16 96-111 34-49 (247)
489 2olj_A Amino acid ABC transpor 34.2 11 0.00038 35.9 0.9 16 96-111 49-64 (263)
490 2cjw_A GTP-binding protein GEM 34.2 10 0.00036 33.8 0.6 14 98-111 7-20 (192)
491 1ltq_A Polynucleotide kinase; 34.2 12 0.00039 36.4 1.0 14 98-111 3-16 (301)
492 1nrj_B SR-beta, signal recogni 34.1 13 0.00044 33.8 1.3 16 96-111 11-26 (218)
493 4dzz_A Plasmid partitioning pr 34.1 11 0.00036 34.1 0.6 14 98-111 2-16 (206)
494 3t1o_A Gliding protein MGLA; G 34.1 10 0.00036 33.5 0.6 14 98-111 15-28 (198)
495 2iwr_A Centaurin gamma 1; ANK 34.0 9.6 0.00033 33.3 0.3 13 99-111 9-21 (178)
496 1f6b_A SAR1; gtpases, N-termin 34.0 9.6 0.00033 34.3 0.3 16 96-111 24-39 (198)
497 1wms_A RAB-9, RAB9, RAS-relate 34.0 11 0.00036 32.9 0.6 14 98-111 8-21 (177)
498 4g1u_C Hemin import ATP-bindin 33.9 11 0.00039 35.9 0.8 16 96-111 36-51 (266)
499 2d2e_A SUFC protein; ABC-ATPas 33.9 11 0.00039 35.5 0.9 16 96-111 28-43 (250)
500 2cxx_A Probable GTP-binding pr 33.8 10 0.00035 33.4 0.5 13 99-111 3-15 (190)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.7e-38 Score=345.16 Aligned_cols=269 Identities=18% Similarity=0.120 Sum_probs=211.1
Q ss_pred ccchHHHHHHHHHhhhC---CceEEEEEccCccCCC--------------CCCcceEEEEEEcCcc--CHHHHHHHHHHH
Q 039519 79 VGLESTFDKVRRCLREE---QVGIIGLYGMGGLLGA--------------PNDFDVVIWMVVSKDL--QLEKIQERIGRR 139 (647)
Q Consensus 79 vGr~~~~~~i~~~L~~~---~~~vi~I~G~gGiGKT--------------~~~F~~~~wv~~s~~~--~~~~~~~~i~~~ 139 (647)
|||++++++|.++|..+ +.++|+|+||||+||| +.+|+.++||++++.+ ++..++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 69999999999999753 6899999999999999 3679999999999985 899999999999
Q ss_pred hCCCCc-----CCCCCCHHHHHHHHHHHhccC-CeeEEEecCCCccccccccCCCCCCCCCcEEEEecCchHHhhhcc-c
Q 039519 140 IGFLDE-----SWKNGSLEDKASDIFRILSKK-KLLLLLDDIWERVDLTKVGVPFPDPENKSRIDFTTRFLEICSAMQ-A 212 (647)
Q Consensus 140 l~~~~~-----~~~~~~~~~~~~~l~~~l~~~-r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~-~ 212 (647)
++.... .....+..+....+++.|+++ ||||||||||+.+++ .+. ...||+||||||++.++..++ .
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHHcCCC
Confidence 986421 112345677889999999996 999999999998764 221 126999999999999998776 4
Q ss_pred ceeEec-------------cccccCC--CChHHHHHHHHHHhcCCchhHHHHhhHhhcCCCHhHHHHHHHHHhhcccCCC
Q 039519 213 HEFLKV-------------EDVLKNH--PNIPELARSVAQECAGLPLALITIGRVMACKKTPQEWHYAIQVLRISASEFP 277 (647)
Q Consensus 213 ~~~~~~-------------~~~~~~~--~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~~~~~ 277 (647)
...|.+ ..++... +++++++++|+++|+|+||||+++|+.++. .+ ++|. +.+....+...
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~-~~-w~~~---~~l~~~l~~~~ 359 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEP-KT-FEKM---AQLNNKLESRG 359 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCS-SS-HHHH---HHHHHHHHHHC
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhcc-ch-HHHH---HHhHHHhhccc
Confidence 456777 1122222 566789999999999999999999999976 32 3333 34433322211
Q ss_pred CCCcchhhHHHHhhcCCCchhhhhHHh-----------hhcCCCCCCcccHHHHHHHhhhc--CCccccC-ccchHHHHH
Q 039519 278 GMGKEVYPLLKYSYDSLPDETIRSCLL-----------YCGLFPEDYRTRKSELIDCWIGE--GFLDQYD-RSGAYDEGY 343 (647)
Q Consensus 278 ~~~~~i~~~l~~sy~~L~~~~~k~~fl-----------~~a~fp~~~~i~~~~Li~~w~a~--g~~~~~~-~~~~~~~~~ 343 (647)
...+..++.+||+.||+ ++|.||+ |||+||+++.|+ +++|+|+ ||+...+ ....++.++
T Consensus 360 --~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~ 432 (549)
T 2a5y_B 360 --LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD 432 (549)
T ss_dssp --SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH
T ss_pred --HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH
Confidence 24789999999999999 9999999 999999999999 8999999 9998766 566777777
Q ss_pred HHHHHHHHhccccccC---CCeeEEe
Q 039519 344 YIIGILLHACLLEEEW---GDIGEEE 366 (647)
Q Consensus 344 ~~~~~L~~~~ll~~~~---~~~~~mh 366 (647)
++++|+++||++... ...|+||
T Consensus 433 -~l~~L~~rsLl~~~~~~~~~~~~mH 457 (549)
T 2a5y_B 433 -RLKRLSKRGALLSGKRMPVLTFKID 457 (549)
T ss_dssp -HHHHTTTBSSCSEEECSSSCEEECC
T ss_pred -HHHHHHHcCCeeEecCCCceEEEeC
Confidence 999999999999862 3579999
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.98 E-value=1.1e-32 Score=306.82 Aligned_cols=256 Identities=16% Similarity=0.175 Sum_probs=197.8
Q ss_pred CcccchHHHHHHHHHhhh-CCceEEEEEccCccCCC------------CCCcce-EEEEEEcCccCHHHHHHHHHHHhCC
Q 039519 77 PTVGLESTFDKVRRCLRE-EQVGIIGLYGMGGLLGA------------PNDFDV-VIWMVVSKDLQLEKIQERIGRRIGF 142 (647)
Q Consensus 77 ~~vGr~~~~~~i~~~L~~-~~~~vi~I~G~gGiGKT------------~~~F~~-~~wv~~s~~~~~~~~~~~i~~~l~~ 142 (647)
..|||++++++|.++|.+ ++.++|+|+||||+||| +.+|+. ++|+++++.++...++..|+..++.
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 359999999999999986 56899999999999999 357875 9999999999988888888776432
Q ss_pred CCcC----CC-----CCCHHHHHHHHHHHh---ccCCeeEEEecCCCccccccccCCCCCCCCCcEEEEecCchHHhhhc
Q 039519 143 LDES----WK-----NGSLEDKASDIFRIL---SKKKLLLLLDDIWERVDLTKVGVPFPDPENKSRIDFTTRFLEICSAM 210 (647)
Q Consensus 143 ~~~~----~~-----~~~~~~~~~~l~~~l---~~~r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~ 210 (647)
.... .+ ..+.++....+++.| .++|+||||||||+.++|+.+. .||+||||||++.++..+
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l 281 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFL 281 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHH
T ss_pred cCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhc
Confidence 1100 01 112345566777766 6799999999999998888752 689999999999998644
Q ss_pred ccceeEecc--c---cccC-----------CCChHHHHHHHHHHhcCCchhHHHHhhHhhcC-CCHhHHHHHHHHHhhcc
Q 039519 211 QAHEFLKVE--D---VLKN-----------HPNIPELARSVAQECAGLPLALITIGRVMACK-KTPQEWHYAIQVLRISA 273 (647)
Q Consensus 211 ~~~~~~~~~--~---~~~~-----------~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~-~~~~~w~~~~~~l~~~~ 273 (647)
.....|.+. . .+.. .....+++.+ .|+|+||||+++|++|+.+ .+.++|...
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~-------- 350 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHV-------- 350 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHC--------
T ss_pred CCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcC--------
Confidence 433233332 1 1100 0112233333 3999999999999999985 267888752
Q ss_pred cCCCCCCcchhhHHHHhhcCCCchhh-hhHHhhhcCCCCCCcccHHHHHHHhhhcCCccccCccchHHHHHHHHHHHHHh
Q 039519 274 SEFPGMGKEVYPLLKYSYDSLPDETI-RSCLLYCGLFPEDYRTRKSELIDCWIGEGFLDQYDRSGAYDEGYYIIGILLHA 352 (647)
Q Consensus 274 ~~~~~~~~~i~~~l~~sy~~L~~~~~-k~~fl~~a~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~~~~L~~~ 352 (647)
....+..++++||+.||+ +. |.||++||+||+++.|++..++.+|+++| ++.++.++++|+++
T Consensus 351 -----~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~~L~eLvdR 414 (1221)
T 1vt4_I 351 -----NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMVVVNKLHKY 414 (1221)
T ss_dssp -----SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHHHHHHHHTS
T ss_pred -----ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHHHHHHHHHhh
Confidence 125899999999999999 78 99999999999999999999999999887 13478899999999
Q ss_pred cccccc-CCCeeEEe
Q 039519 353 CLLEEE-WGDIGEEE 366 (647)
Q Consensus 353 ~ll~~~-~~~~~~mh 366 (647)
||++.. ....|+||
T Consensus 415 SLLq~d~~~~rYrMH 429 (1221)
T 1vt4_I 415 SLVEKQPKESTISIP 429 (1221)
T ss_dssp SSSSBCSSSSEEBCC
T ss_pred CCEEEeCCCCEEEeh
Confidence 999986 45689999
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=1.6e-31 Score=324.06 Aligned_cols=273 Identities=20% Similarity=0.268 Sum_probs=216.9
Q ss_pred CCCCCcccchHHHHHHHHHhhh--CCceEEEEEccCccCCC-------------CCCc-ceEEEEEEcCccC--HHHHHH
Q 039519 73 RPCEPTVGLESTFDKVRRCLRE--EQVGIIGLYGMGGLLGA-------------PNDF-DVVIWMVVSKDLQ--LEKIQE 134 (647)
Q Consensus 73 ~~~~~~vGr~~~~~~i~~~L~~--~~~~vi~I~G~gGiGKT-------------~~~F-~~~~wv~~s~~~~--~~~~~~ 134 (647)
.+.+.||||++++++|.+.|.. ++.++|+|+||||+||| ..+| +.++||++++..+ ....+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 200 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ 200 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHH
Confidence 3346799999999999999963 57899999999999999 2235 5788999998543 455577
Q ss_pred HHHHHhCCCCc--CCCCCCHHHHHHHHHHHhccC--CeeEEEecCCCccccccccCCCCCCCCCcEEEEecCchHHhhh-
Q 039519 135 RIGRRIGFLDE--SWKNGSLEDKASDIFRILSKK--KLLLLLDDIWERVDLTKVGVPFPDPENKSRIDFTTRFLEICSA- 209 (647)
Q Consensus 135 ~i~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~--r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~- 209 (647)
.++..+..... .....+.++....+++.+.++ |+||||||||+.++|+.+ ++||+||||||++.++..
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~ 273 (1249)
T 3sfz_A 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSV 273 (1249)
T ss_dssp HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTC
T ss_pred HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhh
Confidence 78887765432 123457888899999999877 999999999999887764 468999999999999854
Q ss_pred cccceeEeccc--------------cccCCCChHHHHHHHHHHhcCCchhHHHHhhHhhcCCCHhHHHHHHHHHhhcccC
Q 039519 210 MQAHEFLKVED--------------VLKNHPNIPELARSVAQECAGLPLALITIGRVMACKKTPQEWHYAIQVLRISASE 275 (647)
Q Consensus 210 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~~~ 275 (647)
++....+.+.. +....+++++.+++|+++|+|+||||+++|++|+.+ . ..|...++.+....+.
T Consensus 274 ~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~-~-~~~~~~l~~l~~~~~~ 351 (1249)
T 3sfz_A 274 MGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDF-P-NRWAYYLRQLQNKQFK 351 (1249)
T ss_dssp CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHS-S-SCHHHHHHHHHSCCCC
T ss_pred cCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcC-h-hHHHHHHHHHhhhhhh
Confidence 44445555421 112345567889999999999999999999999873 3 5799999888765433
Q ss_pred CC-----CCCcchhhHHHHhhcCCCchhhhhHHhhhcCCCCCCcccHHHHHHHhhhcCCccccCccchHHHHHHHHHHHH
Q 039519 276 FP-----GMGKEVYPLLKYSYDSLPDETIRSCLLYCGLFPEDYRTRKSELIDCWIGEGFLDQYDRSGAYDEGYYIIGILL 350 (647)
Q Consensus 276 ~~-----~~~~~i~~~l~~sy~~L~~~~~k~~fl~~a~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~~~~L~ 350 (647)
.. ...+.+..++.+||+.||+ +.|.||++||+||+++.|++..++.+|.++ ++.+++++++|+
T Consensus 352 ~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~~L~ 419 (1249)
T 3sfz_A 352 RIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQEFV 419 (1249)
T ss_dssp CSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHH
T ss_pred hcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHHHHHHH
Confidence 21 1113689999999999999 899999999999999999999999999664 356788999999
Q ss_pred HhccccccCCC---eeEEe
Q 039519 351 HACLLEEEWGD---IGEEE 366 (647)
Q Consensus 351 ~~~ll~~~~~~---~~~mh 366 (647)
++||++....+ .|+||
T Consensus 420 ~~sl~~~~~~~~~~~~~~h 438 (1249)
T 3sfz_A 420 NKSLLFCNRNGKSFCYYLH 438 (1249)
T ss_dssp HTTSCEEEESSSSEEEECC
T ss_pred hccceEEecCCCceEEEec
Confidence 99999976443 49999
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.96 E-value=7.6e-29 Score=276.41 Aligned_cols=270 Identities=19% Similarity=0.249 Sum_probs=203.3
Q ss_pred CCCCcccchHHHHHHHHHhhh--CCceEEEEEccCccCCC-------------CCCc-ceEEEEEEcCccCHHHHHHH--
Q 039519 74 PCEPTVGLESTFDKVRRCLRE--EQVGIIGLYGMGGLLGA-------------PNDF-DVVIWMVVSKDLQLEKIQER-- 135 (647)
Q Consensus 74 ~~~~~vGr~~~~~~i~~~L~~--~~~~vi~I~G~gGiGKT-------------~~~F-~~~~wv~~s~~~~~~~~~~~-- 135 (647)
..+.||||+.++++|.+.|.. ++.++|+|+||||+||| ..+| +.++|++++.. +...+...
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 346799999999999999974 56899999999999999 2357 48999999875 33333333
Q ss_pred -HHHHhCCCC--cCCCCCCHHHHHHHHHHHhcc--CCeeEEEecCCCccccccccCCCCCCCCCcEEEEecCchHHhhhc
Q 039519 136 -IGRRIGFLD--ESWKNGSLEDKASDIFRILSK--KKLLLLLDDIWERVDLTKVGVPFPDPENKSRIDFTTRFLEICSAM 210 (647)
Q Consensus 136 -i~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~--~r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~ 210 (647)
++..++... ......+.+.....+++.+.+ +++||||||||+.++++.+ +.|++||||||+..++..+
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSV 273 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTC
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhc
Confidence 344554211 112445677888889988876 7999999999998766543 4689999999999987654
Q ss_pred ccceeEecc----------------ccccCCCChHHHHHHHHHHhcCCchhHHHHhhHhhcCCCHhHHHHHHHHHhhccc
Q 039519 211 QAHEFLKVE----------------DVLKNHPNIPELARSVAQECAGLPLALITIGRVMACKKTPQEWHYAIQVLRISAS 274 (647)
Q Consensus 211 ~~~~~~~~~----------------~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~~ 274 (647)
. ...+.+. ..........+.+++|+++|+|+||||+++|++++.. ...|...++.+.....
T Consensus 274 ~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~~~ 350 (591)
T 1z6t_A 274 M-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQF 350 (591)
T ss_dssp C-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSCCC
T ss_pred C-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHhHH
Confidence 3 2233331 0111122345788999999999999999999999873 3479988888876532
Q ss_pred CC-----CCCCcchhhHHHHhhcCCCchhhhhHHhhhcCCCCCCcccHHHHHHHhhhcCCccccCccchHHHHHHHHHHH
Q 039519 275 EF-----PGMGKEVYPLLKYSYDSLPDETIRSCLLYCGLFPEDYRTRKSELIDCWIGEGFLDQYDRSGAYDEGYYIIGIL 349 (647)
Q Consensus 275 ~~-----~~~~~~i~~~l~~sy~~L~~~~~k~~fl~~a~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~~~~L 349 (647)
.. ......+..++..||+.||+ +.|.||+++|+||+++.|+...+..+|.++ .+.+.++++.|
T Consensus 351 ~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~~l~~L 418 (591)
T 1z6t_A 351 KRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVEDILQEF 418 (591)
T ss_dssp CCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHH
T ss_pred HHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHHHHHHHHH
Confidence 21 11224789999999999999 899999999999999999999999999653 23467889999
Q ss_pred HHhccccccC---CCeeEEe
Q 039519 350 LHACLLEEEW---GDIGEEE 366 (647)
Q Consensus 350 ~~~~ll~~~~---~~~~~mh 366 (647)
+++||++... ...|+||
T Consensus 419 ~~~~Ll~~~~~~~~~~~~~H 438 (591)
T 1z6t_A 419 VNKSLLFCDRNGKSFRYYLH 438 (591)
T ss_dssp HHTTSSEEEEETTEEEEECC
T ss_pred HhCcCeEEecCCCccEEEEc
Confidence 9999998642 2379999
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=2.7e-21 Score=198.54 Aligned_cols=219 Identities=18% Similarity=0.183 Sum_probs=175.3
Q ss_pred ccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccchhcCccCcEEeecc
Q 039519 395 RNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLVNLKCLNLQY 474 (647)
Q Consensus 395 ~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~ 474 (647)
.+++.|++++|.+..+|..+.++++|++|++++| .+..+|..++.+++|++|+|++|.++.+|..++++++|++|++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 5788999999999999888888899999999999 666899889999999999999999999999999999999999999
Q ss_pred cccCCcCchhhhc---------CCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhhHHH
Q 039519 475 MYNLNQFPRLVIS---------AFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQALQE 545 (647)
Q Consensus 475 ~~~l~~lp~~~i~---------~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~ 545 (647)
|..+..+|.. ++ .+++|++|++.++. +. ..+..++.+++|+.|+++.|.++.+
T Consensus 160 n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~---l~------------~lp~~l~~l~~L~~L~L~~N~l~~l-- 221 (328)
T 4fcg_A 160 CPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTG---IR------------SLPASIANLQNLKSLKIRNSPLSAL-- 221 (328)
T ss_dssp ETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEEC---CC------------CCCGGGGGCTTCCEEEEESSCCCCC--
T ss_pred CCCccccChh-HhhccchhhhccCCCCCEEECcCCC---cC------------cchHhhcCCCCCCEEEccCCCCCcC--
Confidence 8788888876 44 38899999887643 32 3334577889999999998887754
Q ss_pred HhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCCh-hhccccCCceEEeecccccccccchhhh
Q 039519 546 LLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQ-MIIQRSSLSVHNLFINKNYIHTNQLSIL 624 (647)
Q Consensus 546 l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~l 624 (647)
+.....+++|+.|++++++....++ ..+..+++|++|+|++|...+.+| .++.+++|++|+|++|+ .....+..+
T Consensus 222 -~~~l~~l~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~--~~~~iP~~l 297 (328)
T 4fcg_A 222 -GPAIHHLPKLEELDLRGCTALRNYP-PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV--NLSRLPSLI 297 (328)
T ss_dssp -CGGGGGCTTCCEEECTTCTTCCBCC-CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT--TCCCCCGGG
T ss_pred -chhhccCCCCCEEECcCCcchhhhH-HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC--chhhccHHH
Confidence 2334455678888888755444433 447889999999999998888877 58999999999999964 334455678
Q ss_pred hhhcCCCCcccC
Q 039519 625 LGINRLPHFTKS 636 (647)
Q Consensus 625 ~~l~~L~~L~~~ 636 (647)
+.+++|+.+...
T Consensus 298 ~~L~~L~~l~l~ 309 (328)
T 4fcg_A 298 AQLPANCIILVP 309 (328)
T ss_dssp GGSCTTCEEECC
T ss_pred hhccCceEEeCC
Confidence 888888877554
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=1.7e-19 Score=185.13 Aligned_cols=215 Identities=19% Similarity=0.248 Sum_probs=173.9
Q ss_pred eEEecCCCcccCcc-ccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCC-C
Q 039519 377 FLVHAGFGLTEAPE-IQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTA-I 454 (647)
Q Consensus 377 ~l~~~~~~~~~~~~-~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~-l 454 (647)
.+...+..+..+|. +..+++|++|++++|.+..+|..+.++++|++|++++| .+..+|..++.+++|++|++++|+ +
T Consensus 85 ~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~~~ 163 (328)
T 4fcg_A 85 ALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPEL 163 (328)
T ss_dssp EEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEEETTC
T ss_pred EEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECCCCCCc
Confidence 45555556666654 77789999999999999999988899999999999999 677999999999999999999975 5
Q ss_pred Cccccchhc---------CccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhh
Q 039519 455 THLPIDLQK---------LVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELI 525 (647)
Q Consensus 455 ~~lp~~~~~---------l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~ 525 (647)
..+|..++. +++|++|++++| .+..+|.. ++.+++|++|++.++ .+.. .+..++
T Consensus 164 ~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~-l~~l~~L~~L~L~~N---~l~~------------l~~~l~ 226 (328)
T 4fcg_A 164 TELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS-IANLQNLKSLKIRNS---PLSA------------LGPAIH 226 (328)
T ss_dssp CCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGG-GGGCTTCCEEEEESS---CCCC------------CCGGGG
T ss_pred cccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHh-hcCCCCCCEEEccCC---CCCc------------Cchhhc
Confidence 588887765 999999999999 77899987 899999999988764 4422 233578
Q ss_pred CCCCCcEEEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCCh-hhccccCC
Q 039519 526 GMKYLMAVTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQ-MIIQRSSL 604 (647)
Q Consensus 526 ~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L 604 (647)
.+++|+.|+++.|..... ++.....+.+|+.|++++++.+..++ ..+..+++|++|+|++|+..+.+| +++++++|
T Consensus 227 ~l~~L~~L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L 303 (328)
T 4fcg_A 227 HLPKLEELDLRGCTALRN--YPPIFGGRAPLKRLILKDCSNLLTLP-LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303 (328)
T ss_dssp GCTTCCEEECTTCTTCCB--CCCCTTCCCCCCEEECTTCTTCCBCC-TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred cCCCCCEEECcCCcchhh--hHHHhcCCCCCCEEECCCCCchhhcc-hhhhcCCCCCEEeCCCCCchhhccHHHhhccCc
Confidence 899999999997665432 23333445678888888866655554 348899999999999999988887 59999999
Q ss_pred ceEEeecc
Q 039519 605 SVHNLFIN 612 (647)
Q Consensus 605 ~~L~L~~~ 612 (647)
+.+++..+
T Consensus 304 ~~l~l~~~ 311 (328)
T 4fcg_A 304 CIILVPPH 311 (328)
T ss_dssp CEEECCGG
T ss_pred eEEeCCHH
Confidence 99999873
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=1.2e-19 Score=185.20 Aligned_cols=227 Identities=16% Similarity=0.163 Sum_probs=151.9
Q ss_pred CccccccccEEEEEeec-cccc-ccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCC-ccccchhcC
Q 039519 388 APEIQNWRNVRRMSLMK-NKIE-NLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAIT-HLPIDLQKL 464 (647)
Q Consensus 388 ~~~~~~~~~l~~L~l~~-n~i~-~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~-~lp~~~~~l 464 (647)
++.+..+++|++|++++ |.+. .+|..+.++++|++|++++|.....+|..++++++|++|++++|.++ .+|..++.+
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 148 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence 34566777788888873 6665 36666677777888888877444467777778888888888888777 677777778
Q ss_pred ccCcEEeecccccCC-cCchhhhcCCC-CCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhh
Q 039519 465 VNLKCLNLQYMYNLN-QFPRLVISAFS-KLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQA 542 (647)
Q Consensus 465 ~~L~~L~l~~~~~l~-~lp~~~i~~l~-~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 542 (647)
++|++|++++| .+. .+|.. ++.+. +|+.|++.+ |.+ .+..+..++.++ |+.|+++.|.++.
T Consensus 149 ~~L~~L~L~~N-~l~~~~p~~-l~~l~~~L~~L~L~~---N~l-----------~~~~~~~~~~l~-L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 149 PNLVGITFDGN-RISGAIPDS-YGSFSKLFTSMTISR---NRL-----------TGKIPPTFANLN-LAFVDLSRNMLEG 211 (313)
T ss_dssp TTCCEEECCSS-CCEEECCGG-GGCCCTTCCEEECCS---SEE-----------EEECCGGGGGCC-CSEEECCSSEEEE
T ss_pred CCCCeEECcCC-cccCcCCHH-HhhhhhcCcEEECcC---Cee-----------eccCChHHhCCc-ccEEECcCCcccC
Confidence 88888888877 344 67765 66676 777776654 444 233344456665 8888888776654
Q ss_pred HHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCCh-hhccccCCceEEeecccccccccch
Q 039519 543 LQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQ-MIIQRSSLSVHNLFINKNYIHTNQL 621 (647)
Q Consensus 543 l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~ 621 (647)
. .+.....+++|+.|++++ +++... +..+..+++|++|+|++|.+.+.+| ++..+++|++|+|++| .+... +
T Consensus 212 ~--~~~~~~~l~~L~~L~L~~-N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N--~l~~~-i 284 (313)
T 1ogq_A 212 D--ASVLFGSDKNTQKIHLAK-NSLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN--NLCGE-I 284 (313)
T ss_dssp C--CGGGCCTTSCCSEEECCS-SEECCB-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS--EEEEE-C
T ss_pred c--CCHHHhcCCCCCEEECCC-Cceeee-cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC--ccccc-C
Confidence 2 112222334555555554 222211 1226778999999999998875666 5899999999999995 34433 2
Q ss_pred hhhhhhcCCCCcccCCC
Q 039519 622 SILLGINRLPHFTKSNP 638 (647)
Q Consensus 622 ~~l~~l~~L~~L~~~~~ 638 (647)
+..+.+++|+.|...++
T Consensus 285 p~~~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 285 PQGGNLQRFDVSAYANN 301 (313)
T ss_dssp CCSTTGGGSCGGGTCSS
T ss_pred CCCccccccChHHhcCC
Confidence 33477888888877654
No 8
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=2.6e-19 Score=182.14 Aligned_cols=241 Identities=21% Similarity=0.138 Sum_probs=155.1
Q ss_pred ceEEecCCCcccCccccccccEEEEEeecccccccccC-CCCcceeeEEeccCccccccC---ccccccccCCCeeeecC
Q 039519 376 NFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSEL-QPALTFFLFFNMSNNHLLWKL---PLGISTLVSLEHLDLSS 451 (647)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~-~~~l~~L~~L~l~~~~~~~~l---p~~~~~L~~L~~L~L~~ 451 (647)
..+.+.+.+++.+|. .-.+++++|++++|.+..+|.. +.++++|++|++++| .+..+ |..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCC
Confidence 356777777887776 2346899999999999888876 478889999999998 55443 56677788999999999
Q ss_pred CCCCccccchhcCccCcEEeecccccCCcCch-hhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCC
Q 039519 452 TAITHLPIDLQKLVNLKCLNLQYMYNLNQFPR-LVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYL 530 (647)
Q Consensus 452 ~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L 530 (647)
|.++.+|..+..+++|++|++++| .+..++. ..+..+++|++|++.++ .+. ...+..++.+++|
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n---~l~-----------~~~~~~~~~l~~L 152 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT---HTR-----------VAFNGIFNGLSSL 152 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTS---CCE-----------ECSTTTTTTCTTC
T ss_pred CccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCC---cCC-----------ccchhhcccCcCC
Confidence 998888888888999999999988 6667764 33778888888877653 332 2223335566677
Q ss_pred cEEEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCCh-hhccccCCceEEe
Q 039519 531 MAVTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQ-MIIQRSSLSVHNL 609 (647)
Q Consensus 531 ~~L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L 609 (647)
+.|+++.|.+... .++.....+++|+.|++++ +++..+....+..+++|++|+|++|.....++ .+..+++|++|+|
T Consensus 153 ~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 153 EVLKMAGNSFQEN-FLPDIFTELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp CEEECTTCEEGGG-EECSCCTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred CEEECCCCccccc-cchhHHhhCcCCCEEECCC-CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence 7777765554320 0111222334556666655 34444433345566666666666665544444 3556666666666
Q ss_pred ecccccccccchhhhhhhc-CCCCcccCC
Q 039519 610 FINKNYIHTNQLSILLGIN-RLPHFTKSN 637 (647)
Q Consensus 610 ~~~~~~~~~~~~~~l~~l~-~L~~L~~~~ 637 (647)
++| .+.......+..++ +|+.|+..+
T Consensus 231 ~~N--~l~~~~~~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 231 SLN--HIMTSKKQELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp TTS--CCCBCSSSSCCCCCTTCCEEECTT
T ss_pred CCC--CCcccCHHHHHhhhccCCEEEccC
Confidence 663 34333334445553 555555444
No 9
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=4.7e-19 Score=190.51 Aligned_cols=238 Identities=18% Similarity=0.190 Sum_probs=148.3
Q ss_pred eEEecCCCcccCccccccccEEEEEeecccccccc-cCCCCcceeeEEeccCccccccC-ccccccccCCCeeeecCCCC
Q 039519 377 FLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLS-ELQPALTFFLFFNMSNNHLLWKL-PLGISTLVSLEHLDLSSTAI 454 (647)
Q Consensus 377 ~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~L~L~~~~l 454 (647)
.+.+.+.+++.+|.- -.++++.|++++|.+..++ ..+.++++|++|++++| .+..+ |..|.++++|++|+|++|.+
T Consensus 58 ~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcC
Confidence 456666677776652 2367888888888887764 44577888888888888 44444 45677888888888888888
Q ss_pred Cccccc-hhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEE
Q 039519 455 THLPID-LQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAV 533 (647)
Q Consensus 455 ~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 533 (647)
+.+|.. ++.+++|++|++++| .+..+|...+..+++|+.|++.++ |.+..++. ..+..+++|+.|
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~--~~l~~i~~-----------~~~~~l~~L~~L 201 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGEL--KKLEYISE-----------GAFEGLFNLKYL 201 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCC--TTCCEECT-----------TTTTTCTTCCEE
T ss_pred CccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCC--CCccccCh-----------hhccCCCCCCEE
Confidence 877754 677888888888887 667777766777888888877653 22322222 225566677777
Q ss_pred EEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCCh-hhccccCCceEEeecc
Q 039519 534 TITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQ-MIIQRSSLSVHNLFIN 612 (647)
Q Consensus 534 ~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~ 612 (647)
+++.|.++.++. ...+.+|+.|+|++ +++..+....+..+++|++|+|++|......+ .|..+++|+.|+|++|
T Consensus 202 ~L~~n~l~~~~~----~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 202 NLGMCNIKDMPN----LTPLVGLEELEMSG-NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp ECTTSCCSSCCC----CTTCTTCCEEECTT-SCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ECCCCccccccc----ccccccccEEECcC-CcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence 776666554321 22334556666655 34554443445666666666666665444433 2566666666666663
Q ss_pred cccccccchhhhhhhcCCCCcccCC
Q 039519 613 KNYIHTNQLSILLGINRLPHFTKSN 637 (647)
Q Consensus 613 ~~~~~~~~~~~l~~l~~L~~L~~~~ 637 (647)
.+...+...+..+++|+.|+..+
T Consensus 277 --~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 277 --NLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp --CCSCCCTTSSTTCTTCCEEECCS
T ss_pred --cCCccChHHhccccCCCEEEccC
Confidence 34434444455556665554443
No 10
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=4.2e-19 Score=190.22 Aligned_cols=235 Identities=17% Similarity=0.184 Sum_probs=131.4
Q ss_pred eEEecCCCcccCccccccccEEEEEeecccccccc-cCCCCcceeeEEeccCccccccCc-cccccccCCCeeeecCCCC
Q 039519 377 FLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLS-ELQPALTFFLFFNMSNNHLLWKLP-LGISTLVSLEHLDLSSTAI 454 (647)
Q Consensus 377 ~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~L~~L~~L~L~~~~l 454 (647)
.+.+.+.+++.+|... .++++.|+|++|.+..++ ..+.++++|++|++++| .+..++ ..|.++++|++|+|++|.+
T Consensus 47 ~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 47 KVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp EEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred EEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcC
Confidence 4556666676666522 357777777777777765 34577777777777777 444443 4567777777777777777
Q ss_pred Ccccc-chhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEE
Q 039519 455 THLPI-DLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAV 533 (647)
Q Consensus 455 ~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 533 (647)
+.+|. .+..+++|++|++++| .+..+|...+..+++|++|++.++. .+..++. ..+..+++|+.|
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~--~l~~i~~-----------~~~~~l~~L~~L 190 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELK--RLSYISE-----------GAFEGLSNLRYL 190 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCT--TCCEECT-----------TTTTTCSSCCEE
T ss_pred CeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCC--CcceeCc-----------chhhcccccCee
Confidence 77764 4677777777777777 5666766556777777777666432 2222222 124455566666
Q ss_pred EEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCCh-hhccccCCceEEeecc
Q 039519 534 TITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQ-MIIQRSSLSVHNLFIN 612 (647)
Q Consensus 534 ~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~ 612 (647)
+++.|.++.++. ...+.+|+.|+|++ +++..+....+..+++|++|+|++|......+ .|..+++|+.|+|++|
T Consensus 191 ~L~~n~l~~~~~----~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 191 NLAMCNLREIPN----LTPLIKLDELDLSG-NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp ECTTSCCSSCCC----CTTCSSCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred cCCCCcCccccc----cCCCcccCEEECCC-CccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence 666555443321 12233455555554 23444333334445555555555544333333 2444555555555542
Q ss_pred cccccccchhhhhhhcCCCCcc
Q 039519 613 KNYIHTNQLSILLGINRLPHFT 634 (647)
Q Consensus 613 ~~~~~~~~~~~l~~l~~L~~L~ 634 (647)
.+...+...+..+++|+.|+
T Consensus 266 --~l~~~~~~~~~~l~~L~~L~ 285 (440)
T 3zyj_A 266 --NLTLLPHDLFTPLHHLERIH 285 (440)
T ss_dssp --CCCCCCTTTTSSCTTCCEEE
T ss_pred --CCCccChhHhccccCCCEEE
Confidence 23333333344444444443
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.78 E-value=2.8e-18 Score=177.80 Aligned_cols=247 Identities=19% Similarity=0.222 Sum_probs=123.5
Q ss_pred ceEEecCCCcccCccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCC
Q 039519 376 NFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAIT 455 (647)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~ 455 (647)
+.+...+..+..++.+..++++++|++++|.+..++. +.++++|++|++++| .+..+| .+..+++|++|++++|.++
T Consensus 47 ~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n~i~ 123 (347)
T 4fmz_A 47 TKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNEDNIS 123 (347)
T ss_dssp SEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTSCCC
T ss_pred cEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCCccc
Confidence 3444455555556666666666666666666666655 556666666666666 555554 4666666666666666666
Q ss_pred ccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCC-------------------Cccccccccc----
Q 039519 456 HLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGG-------------------SKIERLKSNV---- 512 (647)
Q Consensus 456 ~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~-------------------n~~~~~~~~~---- 512 (647)
.+|. +..+++|++|++++|..+..++. +..+++|++|++.++.. |.+..++.-.
T Consensus 124 ~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~ 200 (347)
T 4fmz_A 124 DISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTS 200 (347)
T ss_dssp CCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTT
T ss_pred Cchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCc
Confidence 6654 55666666666666544444443 45555555554443322 1121111100
Q ss_pred -----ccCCccccHHHhhCCCCCcEEEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEc
Q 039519 513 -----LFGGHQVLVEELIGMKYLMAVTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVA 587 (647)
Q Consensus 513 -----~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~ 587 (647)
...........+..+++|+.|+++.|.++.+.. ....++|+.|+++++ ++..+ ..+..+++|++|+++
T Consensus 201 L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~l~ 273 (347)
T 4fmz_A 201 LHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTN-QISDI--NAVKDLTKLKMLNVG 273 (347)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSS-CCCCC--GGGTTCTTCCEEECC
T ss_pred cceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc----hhcCCCCCEEECCCC-ccCCC--hhHhcCCCcCEEEcc
Confidence 000000001114455555555555554443321 122234444444431 22221 124555666666666
Q ss_pred CCCCCCCChhhccccCCceEEeecccccccccchhhhhhhcCCCCcccCCC
Q 039519 588 GCKHLEDFQMIIQRSSLSVHNLFINKNYIHTNQLSILLGINRLPHFTKSNP 638 (647)
Q Consensus 588 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~~~~~ 638 (647)
+|.. ..++.+..+++|+.|++++| .+.......++++++|+.|+..+.
T Consensus 274 ~n~l-~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 274 SNQI-SDISVLNNLSQLNSLFLNNN--QLGNEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp SSCC-CCCGGGGGCTTCSEEECCSS--CCCGGGHHHHHTCTTCSEEECCSS
T ss_pred CCcc-CCChhhcCCCCCCEEECcCC--cCCCcChhHhhccccCCEEEccCC
Confidence 6533 23345556666666666653 233344445555566655554443
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=187.53 Aligned_cols=100 Identities=20% Similarity=0.345 Sum_probs=42.9
Q ss_pred cEEEEEeecccccccc-cCCCCcceeeEEeccCccccccC-ccccccccCCCeeeecCCCCCccccc-hhcCccCcEEee
Q 039519 396 NVRRMSLMKNKIENLS-ELQPALTFFLFFNMSNNHLLWKL-PLGISTLVSLEHLDLSSTAITHLPID-LQKLVNLKCLNL 472 (647)
Q Consensus 396 ~l~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l 472 (647)
+++.|++++|.+..++ ..+.++++|++|++++| .+..+ |..|+++++|++|+|++|.++.+|.. ++++++|++|++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 4444444444444432 22344444444444444 22222 33444444444444444444444432 344444444444
Q ss_pred cccccCCcCchhhhcCCCCCcEEec
Q 039519 473 QYMYNLNQFPRLVISAFSKLQVLRM 497 (647)
Q Consensus 473 ~~~~~l~~lp~~~i~~l~~L~~L~l 497 (647)
++| .+..++...+..+++|++|++
T Consensus 112 s~n-~i~~~~~~~~~~l~~L~~L~l 135 (477)
T 2id5_A 112 SEN-KIVILLDYMFQDLYNLKSLEV 135 (477)
T ss_dssp TTS-CCCEECTTTTTTCTTCCEEEE
T ss_pred CCC-ccccCChhHccccccCCEEEC
Confidence 444 233332222444444444433
No 13
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.77 E-value=3.3e-19 Score=181.88 Aligned_cols=224 Identities=18% Similarity=0.170 Sum_probs=170.9
Q ss_pred ccEEEEEeeccccc---ccccCCCCcceeeEEeccC-ccccccCccccccccCCCeeeecCCCCC-ccccchhcCccCcE
Q 039519 395 RNVRRMSLMKNKIE---NLSELQPALTFFLFFNMSN-NHLLWKLPLGISTLVSLEHLDLSSTAIT-HLPIDLQKLVNLKC 469 (647)
Q Consensus 395 ~~l~~L~l~~n~i~---~l~~~~~~l~~L~~L~l~~-~~~~~~lp~~~~~L~~L~~L~L~~~~l~-~lp~~~~~l~~L~~ 469 (647)
.+++.|++++|.+. .+|..+.++++|++|++++ |.....+|..++.+++|++|++++|.++ .+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 47899999999987 4777788889999999994 6566678888999999999999999998 88888999999999
Q ss_pred EeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCC-CCcEEEEEecchhhHHHHhh
Q 039519 470 LNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMK-YLMAVTITLKRLQALQELLI 548 (647)
Q Consensus 470 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~l~~l~~ 548 (647)
|++++|.....+|.. ++.+++|++|++.+ |.+ .+..+..++.++ +|+.|+++.|.+++. ++.
T Consensus 130 L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~---N~l-----------~~~~p~~l~~l~~~L~~L~L~~N~l~~~--~~~ 192 (313)
T 1ogq_A 130 LDFSYNALSGTLPPS-ISSLPNLVGITFDG---NRI-----------SGAIPDSYGSFSKLFTSMTISRNRLTGK--IPP 192 (313)
T ss_dssp EECCSSEEESCCCGG-GGGCTTCCEEECCS---SCC-----------EEECCGGGGCCCTTCCEEECCSSEEEEE--CCG
T ss_pred EeCCCCccCCcCChH-HhcCCCCCeEECcC---Ccc-----------cCcCCHHHhhhhhcCcEEECcCCeeecc--CCh
Confidence 999998443477876 88899999997765 443 334555677787 899999987776531 111
Q ss_pred hhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChhhccccCCceEEeecccccccccchhhhhhhc
Q 039519 549 SQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQMIIQRSSLSVHNLFINKNYIHTNQLSILLGIN 628 (647)
Q Consensus 549 ~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~ 628 (647)
....+. |+.|++++ +++.......+..+++|+.|+|++|...+.+|.+..+++|++|+|++| .+....+..+..++
T Consensus 193 ~~~~l~-L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~ 268 (313)
T 1ogq_A 193 TFANLN-LAFVDLSR-NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN--RIYGTLPQGLTQLK 268 (313)
T ss_dssp GGGGCC-CSEEECCS-SEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSS--CCEECCCGGGGGCT
T ss_pred HHhCCc-ccEEECcC-CcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCC--cccCcCChHHhcCc
Confidence 222222 77777776 344433334478899999999999987777777888999999999985 45555566788889
Q ss_pred CCCCcccCCCC
Q 039519 629 RLPHFTKSNPY 639 (647)
Q Consensus 629 ~L~~L~~~~~~ 639 (647)
+|+.|+..+..
T Consensus 269 ~L~~L~Ls~N~ 279 (313)
T 1ogq_A 269 FLHSLNVSFNN 279 (313)
T ss_dssp TCCEEECCSSE
T ss_pred CCCEEECcCCc
Confidence 99988776553
No 14
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=2.2e-18 Score=173.29 Aligned_cols=233 Identities=18% Similarity=0.166 Sum_probs=179.0
Q ss_pred ceEEecCCCcccCccccccccEEEEEeeccccccccc-CCCCcceeeEEeccCccccccC-ccccccccCCCeeeecCCC
Q 039519 376 NFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSE-LQPALTFFLFFNMSNNHLLWKL-PLGISTLVSLEHLDLSSTA 453 (647)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~L~L~~~~ 453 (647)
..+.+.+.+++.+|. .-++++++|++++|.+..++. .+.++++|++|++++| .+..+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCC
Confidence 456777778888875 335799999999999999875 4688999999999999 55555 7789999999999999997
Q ss_pred -CCcc-ccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCc
Q 039519 454 -ITHL-PIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLM 531 (647)
Q Consensus 454 -l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 531 (647)
++.+ |..+..+++|++|++++| .+..++...+..+++|++|++.+ |.+..++ ...++.+++|+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~---n~l~~~~-----------~~~~~~l~~L~ 156 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQD---NALQALP-----------DDTFRDLGNLT 156 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCS---SCCCCCC-----------TTTTTTCTTCC
T ss_pred CccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCC---CcccccC-----------HhHhccCCCcc
Confidence 8877 678999999999999999 67777655588999999997775 4443333 23367889999
Q ss_pred EEEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChh-hccccCCceEEee
Q 039519 532 AVTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQM-IIQRSSLSVHNLF 610 (647)
Q Consensus 532 ~L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~ 610 (647)
.|+++.|.++.+.. .....+.+|+.|++++ +++..+....+..+++|++|+|++|.....++. +..+++|++|+|+
T Consensus 157 ~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 157 HLFLHGNRISSVPE--RAFRGLHSLDRLLLHQ-NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233 (285)
T ss_dssp EEECCSSCCCEECT--TTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred EEECCCCcccccCH--HHhcCccccCEEECCC-CcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence 99999887765421 1123346788888887 567776556688899999999999977776654 8999999999999
Q ss_pred cccccccccchhhhhhhc
Q 039519 611 INKNYIHTNQLSILLGIN 628 (647)
Q Consensus 611 ~~~~~~~~~~~~~l~~l~ 628 (647)
+|+-............+.
T Consensus 234 ~N~~~c~~~~~~~~~~l~ 251 (285)
T 1ozn_A 234 DNPWVCDCRARPLWAWLQ 251 (285)
T ss_dssp SSCEECSGGGHHHHHHHH
T ss_pred CCCccCCCCcHHHHHHHH
Confidence 976433333333333343
No 15
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=2.1e-18 Score=177.39 Aligned_cols=214 Identities=20% Similarity=0.203 Sum_probs=142.9
Q ss_pred cceEEecCCCcccCccccccccEEEEEeeccccccccc-CCCCcceeeEEeccCccccccC-ccccccccCCCeeeecCC
Q 039519 375 ENFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSE-LQPALTFFLFFNMSNNHLLWKL-PLGISTLVSLEHLDLSST 452 (647)
Q Consensus 375 ~~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~L~L~~~ 452 (647)
.+.+.+.+.+++.+|... .++++.|++++|.+..++. .+.++++|++|++++| .+..+ |..++.+++|++|++++|
T Consensus 33 l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp TTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCC
Confidence 345677777777777532 3689999999999999876 4688999999999999 55555 778999999999999999
Q ss_pred CCCccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcE
Q 039519 453 AITHLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMA 532 (647)
Q Consensus 453 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 532 (647)
.++.+|..+. ++|++|++++| .+..++...+..+++|++|++.++.. .. .+..+..++.+++|+.
T Consensus 111 ~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l---~~---------~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 111 QLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPL---KS---------SGIENGAFQGMKKLSY 175 (330)
T ss_dssp CCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCC---CG---------GGBCTTGGGGCTTCCE
T ss_pred cCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcC---Cc---------cCcChhhccCCCCcCE
Confidence 9999987665 78999999998 67788877688899999997775433 11 1233345677778888
Q ss_pred EEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCCh-hhccccCCceEEeec
Q 039519 533 VTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQ-MIIQRSSLSVHNLFI 611 (647)
Q Consensus 533 L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~ 611 (647)
|+++.|.++.++. ....+|+.|++++ +++..+....+..+++|++|+|++|.....++ .+..+++|++|+|++
T Consensus 176 L~l~~n~l~~l~~-----~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 249 (330)
T 1xku_A 176 IRIADTNITTIPQ-----GLPPSLTELHLDG-NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249 (330)
T ss_dssp EECCSSCCCSCCS-----SCCTTCSEEECTT-SCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred EECCCCccccCCc-----cccccCCEEECCC-CcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCC
Confidence 8887766554321 1114556666554 23443332334444445555554444333333 244444455555444
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.77 E-value=1.5e-18 Score=186.82 Aligned_cols=97 Identities=23% Similarity=0.194 Sum_probs=49.4
Q ss_pred eEEecCCCcccCccccccccEEEEEeeccccccc-ccCCCCcceeeEEeccCccccccC-ccccccccCCCeeeecCCCC
Q 039519 377 FLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENL-SELQPALTFFLFFNMSNNHLLWKL-PLGISTLVSLEHLDLSSTAI 454 (647)
Q Consensus 377 ~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~L~L~~~~l 454 (647)
.+.+.+.+++.+|. -.+++++|++++|.+..+ |..+.++++|++|++++|.....+ |..+.++++|++|++++|.+
T Consensus 14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 14 NAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp EEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred ccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence 34445555555555 224555666665555554 333455555555555555222233 23355555555555555555
Q ss_pred Ccc-ccchhcCccCcEEeeccc
Q 039519 455 THL-PIDLQKLVNLKCLNLQYM 475 (647)
Q Consensus 455 ~~l-p~~~~~l~~L~~L~l~~~ 475 (647)
+.+ |..++++++|++|++++|
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n 113 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQC 113 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTS
T ss_pred CccChhhccCcccCCEEeCCCC
Confidence 533 444555555555555554
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.76 E-value=3.5e-18 Score=180.08 Aligned_cols=123 Identities=19% Similarity=0.245 Sum_probs=78.8
Q ss_pred cceEEecCCCcccCcc--ccccccEEEEEeeccccccccc-CCCCcceeeEEeccCccccccC-ccccccccCCCeeeec
Q 039519 375 ENFLVHAGFGLTEAPE--IQNWRNVRRMSLMKNKIENLSE-LQPALTFFLFFNMSNNHLLWKL-PLGISTLVSLEHLDLS 450 (647)
Q Consensus 375 ~~~l~~~~~~~~~~~~--~~~~~~l~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~L~L~ 450 (647)
.+.+...+..+..+|. +..+++|++|++++|.+..++. .+..+++|++|++++| .+..+ |..++.+++|++|+++
T Consensus 47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECC
Confidence 3445555555555554 4556677777777777776654 4566677777777777 44444 3346677777777777
Q ss_pred CCCCCccccc-hhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccc
Q 039519 451 STAITHLPID-LQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFD 499 (647)
Q Consensus 451 ~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 499 (647)
+|.++.+|.. ++++++|++|++++| .+..++...++.+++|++|++.+
T Consensus 126 ~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~ 174 (390)
T 3o6n_A 126 RNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSS 174 (390)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCS
T ss_pred CCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCC
Confidence 7777777655 366777777777776 55556554466677777776654
No 18
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=181.26 Aligned_cols=227 Identities=20% Similarity=0.175 Sum_probs=128.9
Q ss_pred EecCCCcccCccccccccEEEEEeeccccccccc-CCCCcceeeEEeccCccccccC-ccccccccCCCeeeecCCCCCc
Q 039519 379 VHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSE-LQPALTFFLFFNMSNNHLLWKL-PLGISTLVSLEHLDLSSTAITH 456 (647)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~L~L~~~~l~~ 456 (647)
...+..++.+|.- -.+++++|++++|.++.++. .+.++++|++|++++| .+..+ |..++++++|++|++++|.++.
T Consensus 37 ~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 114 (353)
T 2z80_A 37 KGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSN 114 (353)
T ss_dssp ECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSS
T ss_pred eCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCc
Confidence 3344455555541 12456666666666666554 3455666666666666 33333 3345666666666666666666
Q ss_pred cccc-hhcCccCcEEeecccccCCcCch-hhhcCCCCCcEEeccccCCCcccccccccc-------------cCCccccH
Q 039519 457 LPID-LQKLVNLKCLNLQYMYNLNQFPR-LVISAFSKLQVLRMFDCGGSKIERLKSNVL-------------FGGHQVLV 521 (647)
Q Consensus 457 lp~~-~~~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~-------------~~~~~~~~ 521 (647)
+|.. ++++++|++|++++| .+..+|. ..++.+++|++|++.++. .+..+++..+ .......+
T Consensus 115 ~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~--~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 115 LSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMD--TFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp CCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESS--SCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCc--cccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 6544 556666666666665 4555554 335556666666555431 1222211100 00123334
Q ss_pred HHhhCCCCCcEEEEEecchhhHHHHhhhhhhhhccceeeeeccCCCc-----------------eEEEec----------
Q 039519 522 EELIGMKYLMAVTITLKRLQALQELLISQELQRCTQFLFLRCFNDSK-----------------SLDIFC---------- 574 (647)
Q Consensus 522 ~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~-----------------~L~l~~---------- 574 (647)
..++.+++|+.|+++.|.+..+.... ....++|+.|++++. ++. .+.+..
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~~~~~~~--~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHILLLEIF--VDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp TTTTTCSEEEEEEEECSCSTTHHHHH--HHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred HHHhccccCCeecCCCCccccchhhh--hhhcccccEEECCCC-ccccccccccccccccchhhccccccccccCcchhh
Confidence 56777888888888888776654322 223457888887762 332 233321
Q ss_pred ----ccccCCccEEEEcCCCCCCCChh-hccccCCceEEeeccc
Q 039519 575 ----LACLHNLNKLYVAGCKHLEDFQM-IIQRSSLSVHNLFINK 613 (647)
Q Consensus 575 ----~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~~~ 613 (647)
+..+++|++|+|++|.....++. ++.+++|++|+|++|+
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 45677888888888866544444 5788888888888865
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=3.9e-18 Score=189.89 Aligned_cols=121 Identities=19% Similarity=0.241 Sum_probs=66.6
Q ss_pred eEEecCCCcccCcc--ccccccEEEEEeeccccccccc-CCCCcceeeEEeccCccccccCcc-ccccccCCCeeeecCC
Q 039519 377 FLVHAGFGLTEAPE--IQNWRNVRRMSLMKNKIENLSE-LQPALTFFLFFNMSNNHLLWKLPL-GISTLVSLEHLDLSST 452 (647)
Q Consensus 377 ~l~~~~~~~~~~~~--~~~~~~l~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~L~~~ 452 (647)
.+...+..+..+|. +..+++|+.|++++|.+..++. .+..+++|++|++++| .+..+|+ .++.+++|++|+|++|
T Consensus 55 ~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n 133 (597)
T 3oja_B 55 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN 133 (597)
T ss_dssp EEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCC
Confidence 34444444444443 3445566666666666665543 4455666666666666 3433333 3456666666666666
Q ss_pred CCCccccc-hhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccc
Q 039519 453 AITHLPID-LQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFD 499 (647)
Q Consensus 453 ~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 499 (647)
.++.+|.. ++++++|++|++++| .+..+++..++.+++|++|++.+
T Consensus 134 ~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~ 180 (597)
T 3oja_B 134 DLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSS 180 (597)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTT
T ss_pred CCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcC
Confidence 66666544 356666666666665 44444443355666666665543
No 20
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.75 E-value=8.9e-18 Score=174.42 Aligned_cols=217 Identities=18% Similarity=0.150 Sum_probs=154.8
Q ss_pred cceEEecCCCcccCcc--ccccccEEEEEeeccccccccc-CCCCcceeeEEeccCccccccCccc-cccccCCCeeeec
Q 039519 375 ENFLVHAGFGLTEAPE--IQNWRNVRRMSLMKNKIENLSE-LQPALTFFLFFNMSNNHLLWKLPLG-ISTLVSLEHLDLS 450 (647)
Q Consensus 375 ~~~l~~~~~~~~~~~~--~~~~~~l~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~~-~~~L~~L~~L~L~ 450 (647)
-+.+...+..++.++. +..+++|+.|++++|.+..++. .+.++++|++|++++| .+..+|.. ++.+++|++|+++
T Consensus 54 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECT
T ss_pred CcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECC
Confidence 4456666666666654 7888999999999999988754 4688899999999999 67777766 7889999999999
Q ss_pred CCCCCcccc--chhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccc------------cCC
Q 039519 451 STAITHLPI--DLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVL------------FGG 516 (647)
Q Consensus 451 ~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~------------~~~ 516 (647)
+|.++.+|. .++++++|++|++++|..+..++...++.+++|++|++.++ .+..+++..+ ...
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n---~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS---DLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET---TCCEECTTTTTTCSEEEEEEEECSC
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC---CcCccCHHHHhccccCCeecCCCCc
Confidence 999998886 68889999999999985577776555788888888877653 3433322211 111
Q ss_pred ccccHH-HhhCCCCCcEEEEEecchhhH-----------------------------HHHhhhhhhhhccceeeeeccCC
Q 039519 517 HQVLVE-ELIGMKYLMAVTITLKRLQAL-----------------------------QELLISQELQRCTQFLFLRCFND 566 (647)
Q Consensus 517 ~~~~~~-~l~~l~~L~~L~l~~~~~~~l-----------------------------~~l~~~~~~~~~l~~l~L~~~~~ 566 (647)
....+. .+..+++|+.|+++.|.++.. ..++......++|+.|++++ ++
T Consensus 210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~-N~ 288 (353)
T 2z80_A 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR-NQ 288 (353)
T ss_dssp STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS-SC
T ss_pred cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC-CC
Confidence 111222 244688999999998776542 12232333445677777776 46
Q ss_pred CceEEEecccccCCccEEEEcCCCCCCCCh
Q 039519 567 SKSLDIFCLACLHNLNKLYVAGCKHLEDFQ 596 (647)
Q Consensus 567 L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~ 596 (647)
+..++-..+..+++|++|+|++|+.....|
T Consensus 289 l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 289 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 665553336889999999999998877665
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.75 E-value=8e-18 Score=182.31 Aligned_cols=245 Identities=20% Similarity=0.202 Sum_probs=187.6
Q ss_pred cceEEecCCCcccC--ccccccccEEEEEeeccccccc-ccCCCCcceeeEEeccCccccccCccc-cccccCCCeeeec
Q 039519 375 ENFLVHAGFGLTEA--PEIQNWRNVRRMSLMKNKIENL-SELQPALTFFLFFNMSNNHLLWKLPLG-ISTLVSLEHLDLS 450 (647)
Q Consensus 375 ~~~l~~~~~~~~~~--~~~~~~~~l~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~L~~L~~L~L~ 450 (647)
.+.+...+..++.+ ..+..+++|++|++++|.+..+ |..+.++++|++|++++| .+..+|.. +.++++|++|+|+
T Consensus 34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECT
T ss_pred CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECC
Confidence 44566666666665 3578899999999999999987 566799999999999999 67777764 7899999999999
Q ss_pred CCCCCcc-ccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCC
Q 039519 451 STAITHL-PIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKY 529 (647)
Q Consensus 451 ~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~ 529 (647)
+|.++.+ |..+.++++|++|++++| .+..++...++.+++|++|++.++ .+ .......+..+++
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n---~l-----------~~~~~~~l~~l~~ 177 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKC---NL-----------TSIPTEALSHLHG 177 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESC---CC-----------SSCCHHHHTTCTT
T ss_pred CCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCC---cC-----------cccChhHhcccCC
Confidence 9999965 567899999999999998 667776655889999999988764 33 3344456889999
Q ss_pred CcEEEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCCh-hhccccCCceEE
Q 039519 530 LMAVTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQ-MIIQRSSLSVHN 608 (647)
Q Consensus 530 L~~L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~ 608 (647)
|+.|+++.|.+..+.. .....+.+|+.|++++++.+..+... .....+|++|+|++|.....++ .+..+++|+.|+
T Consensus 178 L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 254 (477)
T 2id5_A 178 LIVLRLRHLNINAIRD--YSFKRLYRLKVLEISHWPYLDTMTPN-CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLN 254 (477)
T ss_dssp CCEEEEESCCCCEECT--TCSCSCTTCCEEEEECCTTCCEECTT-TTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEE
T ss_pred CcEEeCCCCcCcEeCh--hhcccCcccceeeCCCCccccccCcc-cccCccccEEECcCCcccccCHHHhcCccccCeeE
Confidence 9999999887665321 11223446667777766555555432 2334599999999997665554 389999999999
Q ss_pred eecccccccccchhhhhhhcCCCCcccCCCCc
Q 039519 609 LFINKNYIHTNQLSILLGINRLPHFTKSNPYH 640 (647)
Q Consensus 609 L~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~ 640 (647)
|++| .+.......+.++++|+.|...+..+
T Consensus 255 Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (477)
T 2id5_A 255 LSYN--PISTIEGSMLHELLRLQEIQLVGGQL 284 (477)
T ss_dssp CCSS--CCCEECTTSCTTCTTCCEEECCSSCC
T ss_pred CCCC--cCCccChhhccccccCCEEECCCCcc
Confidence 9995 45555666788899999998776544
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.75 E-value=1.7e-17 Score=171.93 Aligned_cols=244 Identities=17% Similarity=0.222 Sum_probs=162.0
Q ss_pred ceEEecCCCcccCccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCC
Q 039519 376 NFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAIT 455 (647)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~ 455 (647)
+.+...+..+..++.+..+++|++|++++|.+..++. +..+++|++|++++|.....++ .+..+++|++|++++|.+.
T Consensus 91 ~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~ 168 (347)
T 4fmz_A 91 TNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK 168 (347)
T ss_dssp CEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCC
T ss_pred CEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcC
Confidence 3445555556666667777777777777777776655 4666677777777774444333 4667777777777777776
Q ss_pred ccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCccccccc-----c-----cccCCccccHHHhh
Q 039519 456 HLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKS-----N-----VLFGGHQVLVEELI 525 (647)
Q Consensus 456 ~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~-----~-----~~~~~~~~~~~~l~ 525 (647)
.++. ++.+++|++|++++| .+..++. +..+++|+.|++.++. +..++. . +.+. .-.....+.
T Consensus 169 ~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~---l~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~ 240 (347)
T 4fmz_A 169 DVTP-IANLTDLYSLSLNYN-QIEDISP--LASLTSLHYFTAYVNQ---ITDITPVANMTRLNSLKIGNN-KITDLSPLA 240 (347)
T ss_dssp CCGG-GGGCTTCSEEECTTS-CCCCCGG--GGGCTTCCEEECCSSC---CCCCGGGGGCTTCCEEECCSS-CCCCCGGGT
T ss_pred Cchh-hccCCCCCEEEccCC-ccccccc--ccCCCccceeecccCC---CCCCchhhcCCcCCEEEccCC-ccCCCcchh
Confidence 6654 667777777777776 5566665 5566666666555432 222211 0 0000 111112288
Q ss_pred CCCCCcEEEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCCh-hhccccCC
Q 039519 526 GMKYLMAVTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQ-MIIQRSSL 604 (647)
Q Consensus 526 ~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L 604 (647)
.+++|+.|+++.|.++.++ ....+++|+.|+++++ ++..+ ..+..+++|++|+|++|......+ .++.+++|
T Consensus 241 ~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISDIN----AVKDLTKLKMLNVGSN-QISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp TCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred cCCCCCEEECCCCccCCCh----hHhcCCCcCEEEccCC-ccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 8999999999988877653 2334567888888874 66665 458899999999999998776666 48999999
Q ss_pred ceEEeecccccccccchhhhhhhcCCCCcccCCCCc
Q 039519 605 SVHNLFINKNYIHTNQLSILLGINRLPHFTKSNPYH 640 (647)
Q Consensus 605 ~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~ 640 (647)
++|+|++|+ +... +.+..+++|+.|+..+..+
T Consensus 314 ~~L~L~~n~--l~~~--~~~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 314 TTLFLSQNH--ITDI--RPLASLSKMDSADFANQVI 345 (347)
T ss_dssp SEEECCSSS--CCCC--GGGGGCTTCSEESSSCC--
T ss_pred CEEEccCCc--cccc--cChhhhhccceeehhhhcc
Confidence 999999974 3322 2388899999998877543
No 23
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.75 E-value=5.7e-18 Score=174.29 Aligned_cols=218 Identities=19% Similarity=0.191 Sum_probs=140.6
Q ss_pred ceEEecCCCcccCccccccccEEEEEeeccccccccc-CCCCcceeeEEeccCccccccC-ccccccccCCCeeeecCCC
Q 039519 376 NFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSE-LQPALTFFLFFNMSNNHLLWKL-PLGISTLVSLEHLDLSSTA 453 (647)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~L~L~~~~ 453 (647)
+.+.+.+..++.+|... .++++.|++++|.+..++. .+.++++|++|++++| .+..+ |..++.+++|++|++++|.
T Consensus 36 ~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 113 (332)
T 2ft3_A 36 RVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNH 113 (332)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSC
T ss_pred CEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCc
Confidence 45667777777777533 4789999999999998755 5689999999999999 45554 7789999999999999999
Q ss_pred CCccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEE
Q 039519 454 ITHLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAV 533 (647)
Q Consensus 454 l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 533 (647)
++.+|..+. ++|++|++++| .+..+|...++.+++|++|++.++ .+... +..+..++.+ +|+.|
T Consensus 114 l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n---~l~~~---------~~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 114 LVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGN---PLENS---------GFEPGAFDGL-KLNYL 177 (332)
T ss_dssp CCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSC---CCBGG---------GSCTTSSCSC-CCSCC
T ss_pred CCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCC---ccccC---------CCCcccccCC-ccCEE
Confidence 999998766 79999999998 778888776889999999977753 33210 1111223333 44444
Q ss_pred EEEecchhhHHH------------------H-hhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCC
Q 039519 534 TITLKRLQALQE------------------L-LISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLED 594 (647)
Q Consensus 534 ~l~~~~~~~l~~------------------l-~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~ 594 (647)
+++.|.++.++. + +.....+.+|+.|++++ +++..+....+..+++|++|+|++|.....
T Consensus 178 ~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 256 (332)
T 2ft3_A 178 RISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH-NQIRMIENGSLSFLPTLRELHLDNNKLSRV 256 (332)
T ss_dssp BCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCS-SCCCCCCTTGGGGCTTCCEEECCSSCCCBC
T ss_pred ECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCC-CcCCcCChhHhhCCCCCCEEECCCCcCeec
Confidence 544444333210 0 00111222344444443 233333222355566666666666654433
Q ss_pred ChhhccccCCceEEeecc
Q 039519 595 FQMIIQRSSLSVHNLFIN 612 (647)
Q Consensus 595 ~~~~~~l~~L~~L~L~~~ 612 (647)
++++..+++|+.|++++|
T Consensus 257 p~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 257 PAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp CTTGGGCTTCCEEECCSS
T ss_pred ChhhhcCccCCEEECCCC
Confidence 334666666666666663
No 24
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.75 E-value=5.4e-18 Score=194.37 Aligned_cols=233 Identities=15% Similarity=0.153 Sum_probs=157.4
Q ss_pred cccccccEEEEEeecccccc-cccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCC-ccccchhcCccC
Q 039519 390 EIQNWRNVRRMSLMKNKIEN-LSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAIT-HLPIDLQKLVNL 467 (647)
Q Consensus 390 ~~~~~~~l~~L~l~~n~i~~-l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~-~lp~~~~~l~~L 467 (647)
.+..+++|+.|++++|.+.+ +|..+.++++|++|++++|.....+|..++.+++|++|++++|.++ .+|..++++++|
T Consensus 413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 492 (768)
T 3rgz_A 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCC
Confidence 45667777777777777764 5556677777777777777555567777777777888888877777 667777777888
Q ss_pred cEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhh-HHHH
Q 039519 468 KCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQA-LQEL 546 (647)
Q Consensus 468 ~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-l~~l 546 (647)
++|++++|.....+|.. ++.+++|+.|++.++ ++ .+..+..++.+++|+.|+++.|.+.+ ++.-
T Consensus 493 ~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N---~l-----------~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 493 NWISLSNNRLTGEIPKW-IGRLENLAILKLSNN---SF-----------SGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp CEEECCSSCCCSCCCGG-GGGCTTCCEEECCSS---CC-----------EEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred CEEEccCCccCCcCChH-HhcCCCCCEEECCCC---cc-----------cCcCCHHHcCCCCCCEEECCCCccCCcCChH
Confidence 88888777444466765 777777777766653 33 45566678888899999988776542 1100
Q ss_pred hhhh-------------------------------------------hhhhccc-------------eeeeeccCCCceE
Q 039519 547 LISQ-------------------------------------------ELQRCTQ-------------FLFLRCFNDSKSL 570 (647)
Q Consensus 547 ~~~~-------------------------------------------~~~~~l~-------------~l~L~~~~~L~~L 570 (647)
.... ..+..+. .-.+..+.+|+.|
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L 637 (768)
T 3rgz_A 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637 (768)
T ss_dssp GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE
T ss_pred HhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEE
Confidence 0000 0000000 0012223455555
Q ss_pred EEec----------ccccCCccEEEEcCCCCCCCChh-hccccCCceEEeecccccccccchhhhhhhcCCCCcccCCCC
Q 039519 571 DIFC----------LACLHNLNKLYVAGCKHLEDFQM-IIQRSSLSVHNLFINKNYIHTNQLSILLGINRLPHFTKSNPY 639 (647)
Q Consensus 571 ~l~~----------~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~ 639 (647)
+++. ++.+++|+.|+|++|.+.+.+|. ++.+++|+.|+|++ |.+.+..+..++++++|+.|+.+++.
T Consensus 638 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~--N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS--NKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp ECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS--SCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred ECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCC--CcccCcCChHHhCCCCCCEEECcCCc
Confidence 5532 77888999999999988877774 89999999999998 44666667788888888888777653
No 25
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.74 E-value=6.5e-18 Score=195.70 Aligned_cols=122 Identities=21% Similarity=0.235 Sum_probs=85.7
Q ss_pred ceEEecCCCcccCccccccccEEEEEeeccccccc-ccCCCCcceeeEEeccCccccccC-ccccccccCCCeeeecCCC
Q 039519 376 NFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENL-SELQPALTFFLFFNMSNNHLLWKL-PLGISTLVSLEHLDLSSTA 453 (647)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~L~L~~~~ 453 (647)
..+.+.+.+++.+|. -++++++|+|++|.+..+ |..+.++++|++|++++|.....+ |..|+++++|++|+|++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 456667777787777 557888888888888775 445677788888888877555555 5567778888888888887
Q ss_pred CCcc-ccchhcCccCcEEeecccccCCc-Cch-hhhcCCCCCcEEecccc
Q 039519 454 ITHL-PIDLQKLVNLKCLNLQYMYNLNQ-FPR-LVISAFSKLQVLRMFDC 500 (647)
Q Consensus 454 l~~l-p~~~~~l~~L~~L~l~~~~~l~~-lp~-~~i~~l~~L~~L~l~~~ 500 (647)
++.+ |..++++++|++|+|++| .+.. +|. ..++.+++|++|++.++
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N 133 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN 133 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC
T ss_pred CcccCHhHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCC
Confidence 7755 667777778888888777 3433 333 23567777777766653
No 26
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=1.2e-18 Score=177.30 Aligned_cols=241 Identities=20% Similarity=0.210 Sum_probs=181.0
Q ss_pred cceEEecCCCcccCcc--ccccccEEEEEeeccccccc---ccCCCCcceeeEEeccCccccccCccccccccCCCeeee
Q 039519 375 ENFLVHAGFGLTEAPE--IQNWRNVRRMSLMKNKIENL---SELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDL 449 (647)
Q Consensus 375 ~~~l~~~~~~~~~~~~--~~~~~~l~~L~l~~n~i~~l---~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L 449 (647)
-+.+...+..+..+|. +..+++|+.|++++|.+..+ +..+..+++|++|++++| .+..+|..+..+++|++|++
T Consensus 30 l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~l 108 (306)
T 2z66_A 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDF 108 (306)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEEEC
T ss_pred CCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEEEC
Confidence 4456666677777765 67899999999999998865 344466889999999999 77789988999999999999
Q ss_pred cCCCCCcccc--chhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCC
Q 039519 450 SSTAITHLPI--DLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGM 527 (647)
Q Consensus 450 ~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l 527 (647)
++|.++.+|. .+..+++|++|++++| .+..++...+..+++|++|++.+ |.+.. ...+..++.+
T Consensus 109 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~---n~l~~----------~~~~~~~~~l 174 (306)
T 2z66_A 109 QHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAG---NSFQE----------NFLPDIFTEL 174 (306)
T ss_dssp TTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTT---CEEGG----------GEECSCCTTC
T ss_pred CCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCC---Ccccc----------ccchhHHhhC
Confidence 9999998874 7889999999999998 55555554588899999997765 44421 1233457788
Q ss_pred CCCcEEEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChh-hcccc-CCc
Q 039519 528 KYLMAVTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQM-IIQRS-SLS 605 (647)
Q Consensus 528 ~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~-~L~ 605 (647)
++|+.|+++.|.++.+. +.....+++|+.|++++ +.+..+....+..+++|++|+|++|...+.+|. +..++ +|+
T Consensus 175 ~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~ 251 (306)
T 2z66_A 175 RNLTFLDLSQCQLEQLS--PTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 251 (306)
T ss_dssp TTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCC
T ss_pred cCCCEEECCCCCcCCcC--HHHhcCCCCCCEEECCC-CccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCC
Confidence 99999999988776531 12233456788888887 567666554578899999999999988777764 77775 999
Q ss_pred eEEeecccccccccchhhhhhhcCCCCc
Q 039519 606 VHNLFINKNYIHTNQLSILLGINRLPHF 633 (647)
Q Consensus 606 ~L~L~~~~~~~~~~~~~~l~~l~~L~~L 633 (647)
+|+|++|+-...+.......++..++.+
T Consensus 252 ~L~L~~N~~~~~c~~~~~~~~l~~~~~~ 279 (306)
T 2z66_A 252 FLNLTQNDFACTCEHQSFLQWIKDQRQL 279 (306)
T ss_dssp EEECTTCCEECSGGGHHHHHHHHHTGGG
T ss_pred EEEccCCCeecccChHHHHHHHHhhhhh
Confidence 9999997533333333334455544443
No 27
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=7.9e-18 Score=180.94 Aligned_cols=223 Identities=15% Similarity=0.128 Sum_probs=178.9
Q ss_pred cceEEecCCCcccC--ccccccccEEEEEeecccccccc-cCCCCcceeeEEeccCccccccCccc-cccccCCCeeeec
Q 039519 375 ENFLVHAGFGLTEA--PEIQNWRNVRRMSLMKNKIENLS-ELQPALTFFLFFNMSNNHLLWKLPLG-ISTLVSLEHLDLS 450 (647)
Q Consensus 375 ~~~l~~~~~~~~~~--~~~~~~~~l~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~L~~L~~L~L~ 450 (647)
.+.+...+..+..+ ..+..+++|+.|++++|.+..++ ..+.++++|++|++++| .+..+|.. +..+++|++|+|+
T Consensus 77 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECC
T ss_pred ccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEECC
Confidence 34566666666654 45788999999999999999976 45688999999999999 67777655 8899999999999
Q ss_pred CCCCCcccc-chhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCC
Q 039519 451 STAITHLPI-DLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKY 529 (647)
Q Consensus 451 ~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~ 529 (647)
+|.++.+|. .+.++++|++|++++|..+..+|.+.+..+++|+.|++.+ |.+..+| .+..+++
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~---n~l~~~~-------------~~~~l~~ 219 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM---CNIKDMP-------------NLTPLVG 219 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT---SCCSSCC-------------CCTTCTT
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC---Ccccccc-------------ccccccc
Confidence 999998875 6889999999999998789999987789999999997775 4443322 3678899
Q ss_pred CcEEEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChh-hccccCCceEE
Q 039519 530 LMAVTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQM-IIQRSSLSVHN 608 (647)
Q Consensus 530 L~~L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~ 608 (647)
|+.|+++.|.++.+. +.....+.+|+.|++++ +++..+....+..+++|++|+|++|.+...++. +..+++|+.|+
T Consensus 220 L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 220 LEELEMSGNHFPEIR--PGSFHGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296 (452)
T ss_dssp CCEEECTTSCCSEEC--GGGGTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEE
T ss_pred ccEEECcCCcCcccC--cccccCccCCCEEEeCC-CcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEE
Confidence 999999988876542 22334456788888887 577777666688999999999999977665554 78999999999
Q ss_pred eeccccccc
Q 039519 609 LFINKNYIH 617 (647)
Q Consensus 609 L~~~~~~~~ 617 (647)
|++|+-...
T Consensus 297 L~~Np~~Cd 305 (452)
T 3zyi_A 297 LHHNPWNCD 305 (452)
T ss_dssp CCSSCEECS
T ss_pred ccCCCcCCC
Confidence 999874333
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.74 E-value=1.2e-17 Score=175.94 Aligned_cols=135 Identities=18% Similarity=0.273 Sum_probs=110.3
Q ss_pred cccccEEEEEeecccccccccCC-CCcceeeEEeccCccccccCc-cccccccCCCeeeecCCCCCccc-cchhcCccCc
Q 039519 392 QNWRNVRRMSLMKNKIENLSELQ-PALTFFLFFNMSNNHLLWKLP-LGISTLVSLEHLDLSSTAITHLP-IDLQKLVNLK 468 (647)
Q Consensus 392 ~~~~~l~~L~l~~n~i~~l~~~~-~~l~~L~~L~l~~~~~~~~lp-~~~~~L~~L~~L~L~~~~l~~lp-~~~~~l~~L~ 468 (647)
..+++++.|++.+|.+..+|... ..+++|++|++++| .+..+| ..+..+++|++|++++|.++.+| ..++++++|+
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 34689999999999999998864 77899999999999 566665 47899999999999999999776 5589999999
Q ss_pred EEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhh
Q 039519 469 CLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQA 542 (647)
Q Consensus 469 ~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 542 (647)
+|++++| .+..+|.+.++.+++|++|++.+ |.+..++ +..++.+++|+.|+++.|.++.
T Consensus 121 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~---n~l~~~~-----------~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 121 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSN---NNLERIE-----------DDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCS---SCCCBCC-----------TTTTSSCTTCCEEECCSSCCSB
T ss_pred EEECCCC-ccCcCCHHHhcCCCCCcEEECCC---CccCccC-----------hhhccCCCCCCEEECCCCcCCc
Confidence 9999999 78899988668999999998775 4443332 3336677788888887776654
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.74 E-value=2.5e-17 Score=177.79 Aligned_cols=245 Identities=18% Similarity=0.226 Sum_probs=153.5
Q ss_pred cceEEecCCCcccCccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCC
Q 039519 375 ENFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAI 454 (647)
Q Consensus 375 ~~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l 454 (647)
.+.+...+..+..+|.+..+++|++|++++|.+..++. +.++++|++|++++| .+..+|. ++.+++|++|++++|.+
T Consensus 48 l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~l 124 (466)
T 1o6v_A 48 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNNQI 124 (466)
T ss_dssp CCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred ccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEECCCCCC
Confidence 34555666677777888888899999999998888776 688888999999988 6666765 88889999999999988
Q ss_pred CccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccc--------c-ccCCccccHHHhh
Q 039519 455 THLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSN--------V-LFGGHQVLVEELI 525 (647)
Q Consensus 455 ~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~--------~-~~~~~~~~~~~l~ 525 (647)
+.+|. ++++++|++|++++| .+..+|. ++.+++|+.|++.+ .+..+++- + .....-..+..+.
T Consensus 125 ~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~ 196 (466)
T 1o6v_A 125 TDIDP-LKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLSFGN----QVTDLKPLANLTTLERLDISSNKVSDISVLA 196 (466)
T ss_dssp CCCGG-GTTCTTCSEEEEEEE-EECCCGG--GTTCTTCSEEEEEE----SCCCCGGGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred CCChH-HcCCCCCCEEECCCC-ccCCChh--hccCCcccEeecCC----cccCchhhccCCCCCEEECcCCcCCCChhhc
Confidence 88875 888889999999888 5677765 67777777776642 11111100 0 0000011122356
Q ss_pred CCCCCcEEEEEecchhhHHHHhhhhhhhhccceeeeec-----------cCCCceEEEec--------ccccCCccEEEE
Q 039519 526 GMKYLMAVTITLKRLQALQELLISQELQRCTQFLFLRC-----------FNDSKSLDIFC--------LACLHNLNKLYV 586 (647)
Q Consensus 526 ~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~-----------~~~L~~L~l~~--------~~~l~~L~~L~L 586 (647)
.+++|+.|+++.|.+..+.. ...+++|+.|++++ +++|+.|++.. +..+++|++|+|
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 272 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 272 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred cCCCCCEEEecCCccccccc----ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEEC
Confidence 66777777777666554322 22344566665554 23444444422 445556666666
Q ss_pred cCCCCCCCChhhccccCCceEEeecccccccccchhhhhhhcCCCCcccCCCC
Q 039519 587 AGCKHLEDFQMIIQRSSLSVHNLFINKNYIHTNQLSILLGINRLPHFTKSNPY 639 (647)
Q Consensus 587 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~ 639 (647)
++|..... +.+..+++|+.|++++|. +. .++.++.+++|+.|+..+..
T Consensus 273 ~~n~l~~~-~~~~~l~~L~~L~L~~n~--l~--~~~~~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 273 GANQISNI-SPLAGLTALTNLELNENQ--LE--DISPISNLKNLTYLTLYFNN 320 (466)
T ss_dssp CSSCCCCC-GGGTTCTTCSEEECCSSC--CS--CCGGGGGCTTCSEEECCSSC
T ss_pred CCCccCcc-ccccCCCccCeEEcCCCc--cc--CchhhcCCCCCCEEECcCCc
Confidence 66644333 335666666666666642 22 12235666667666655443
No 30
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=8.1e-18 Score=180.23 Aligned_cols=224 Identities=16% Similarity=0.147 Sum_probs=179.5
Q ss_pred ceEEecCCCcccC--ccccccccEEEEEeeccccccccc-CCCCcceeeEEeccCccccccCcc-ccccccCCCeeeecC
Q 039519 376 NFLVHAGFGLTEA--PEIQNWRNVRRMSLMKNKIENLSE-LQPALTFFLFFNMSNNHLLWKLPL-GISTLVSLEHLDLSS 451 (647)
Q Consensus 376 ~~l~~~~~~~~~~--~~~~~~~~l~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~L~~ 451 (647)
+.+...+..+..+ ..+..+++|+.|+|++|.+..++. .+.++++|++|++++| .+..+|. .+..+++|++|+|++
T Consensus 67 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 145 (440)
T 3zyj_A 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRN 145 (440)
T ss_dssp SEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCS
T ss_pred cEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCC
Confidence 4455555555554 457889999999999999998764 4688999999999999 6777775 589999999999999
Q ss_pred CCCCcccc-chhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCC
Q 039519 452 TAITHLPI-DLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYL 530 (647)
Q Consensus 452 ~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L 530 (647)
|.++.+|. .+.++++|++|++++|..+..++.+.+..+++|++|++.+ |.+..+| .+..+++|
T Consensus 146 N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~---n~l~~~~-------------~~~~l~~L 209 (440)
T 3zyj_A 146 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM---CNLREIP-------------NLTPLIKL 209 (440)
T ss_dssp CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT---SCCSSCC-------------CCTTCSSC
T ss_pred CcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC---CcCcccc-------------ccCCCccc
Confidence 99998875 6889999999999998788899987789999999997775 4443332 36788999
Q ss_pred cEEEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChh-hccccCCceEEe
Q 039519 531 MAVTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQM-IIQRSSLSVHNL 609 (647)
Q Consensus 531 ~~L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L 609 (647)
+.|+++.|.++.+. +.....+.+|+.|+|++ +++..+....+..+++|++|+|++|.+...++. +..+++|+.|+|
T Consensus 210 ~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 210 DELDLSGNHLSAIR--PGSFQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286 (440)
T ss_dssp CEEECTTSCCCEEC--TTTTTTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEEC
T ss_pred CEEECCCCccCccC--hhhhccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEc
Confidence 99999988776542 22334456788888887 577777666688999999999999977666654 789999999999
Q ss_pred eccccccccc
Q 039519 610 FINKNYIHTN 619 (647)
Q Consensus 610 ~~~~~~~~~~ 619 (647)
++|+-..++.
T Consensus 287 ~~Np~~CdC~ 296 (440)
T 3zyj_A 287 HHNPWNCNCD 296 (440)
T ss_dssp CSSCEECSST
T ss_pred CCCCccCCCC
Confidence 9987444433
No 31
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.73 E-value=2.2e-18 Score=193.05 Aligned_cols=202 Identities=17% Similarity=0.160 Sum_probs=131.0
Q ss_pred cccccccEEEEEeecccccc------------------cccCCC--CcceeeEEeccCccccccCccccccccCCCeeee
Q 039519 390 EIQNWRNVRRMSLMKNKIEN------------------LSELQP--ALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDL 449 (647)
Q Consensus 390 ~~~~~~~l~~L~l~~n~i~~------------------l~~~~~--~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L 449 (647)
.+.++++|++|++++|.+.. +|..+. ++++|++|++++|...+.+|..++++++|++|++
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 46778888888888888888 888877 8888888888888667788888888888888888
Q ss_pred cCCC-CC--ccccchhcC------ccCcEEeecccccCCcCch--hhhcCCCCCcEEeccccCCCccc-ccccccccCCc
Q 039519 450 SSTA-IT--HLPIDLQKL------VNLKCLNLQYMYNLNQFPR--LVISAFSKLQVLRMFDCGGSKIE-RLKSNVLFGGH 517 (647)
Q Consensus 450 ~~~~-l~--~lp~~~~~l------~~L~~L~l~~~~~l~~lp~--~~i~~l~~L~~L~l~~~~~n~~~-~~~~~~~~~~~ 517 (647)
++|. ++ .+|..++++ ++|++|++++| .+..+|. . ++.+++|++|++.+ |.+. .+|
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~-l~~l~~L~~L~L~~---N~l~g~ip-------- 347 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETS-LQKMKKLGMLECLY---NQLEGKLP-------- 347 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHH-HTTCTTCCEEECCS---CCCEEECC--------
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhh-hccCCCCCEEeCcC---CcCccchh--------
Confidence 8887 77 488888776 88888888888 6668887 5 78888888887664 4443 222
Q ss_pred cccHHHhhCCCCCcEEEEEecchhhHHHHhhhhhhhhc-cceeeeecc--------------CCCceEEEe---------
Q 039519 518 QVLVEELIGMKYLMAVTITLKRLQALQELLISQELQRC-TQFLFLRCF--------------NDSKSLDIF--------- 573 (647)
Q Consensus 518 ~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~-l~~l~L~~~--------------~~L~~L~l~--------- 573 (647)
.++.+++|+.|+++.|.++.+ +.....+.+ |+.|++++. .+|+.|++.
T Consensus 348 -----~~~~l~~L~~L~L~~N~l~~l---p~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 348 -----AFGSEIKLASLNLAYNQITEI---PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp -----CCEEEEEESEEECCSSEEEEC---CTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred -----hhCCCCCCCEEECCCCccccc---cHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcch
Confidence 233444444444444433311 111222223 444444331 022222221
Q ss_pred -ccc-------ccCCccEEEEcCCCCCCCChh-hccccCCceEEeecc
Q 039519 574 -CLA-------CLHNLNKLYVAGCKHLEDFQM-IIQRSSLSVHNLFIN 612 (647)
Q Consensus 574 -~~~-------~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~~ 612 (647)
.+. .+++|++|+|++|.....++. +..+++|++|+|++|
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS
T ss_pred hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC
Confidence 123 455777777777765544443 455777777777774
No 32
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=2.3e-17 Score=188.53 Aligned_cols=235 Identities=15% Similarity=0.129 Sum_probs=112.0
Q ss_pred cEEEEEeeccccccccc--CCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccchhcCcc-CcEEee
Q 039519 396 NVRRMSLMKNKIENLSE--LQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLVN-LKCLNL 472 (647)
Q Consensus 396 ~l~~L~l~~n~i~~l~~--~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~-L~~L~l 472 (647)
+|+.|++++|.+..+|. .+.++++|+.|++++| .+..+| .++.+++|++|+|++|.++.+|..+.++++ |++|++
T Consensus 549 ~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~L 626 (876)
T 4ecn_A 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF 626 (876)
T ss_dssp TCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEEC
T ss_pred CccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEEC
Confidence 55555555555555554 4455555555555555 333555 555555555555555555555555555555 555555
Q ss_pred cccccCCcCchhhhcCCCC--CcEEeccccCCCccccccccc-----------------ccCCccccHHH-hhCCCCCcE
Q 039519 473 QYMYNLNQFPRLVISAFSK--LQVLRMFDCGGSKIERLKSNV-----------------LFGGHQVLVEE-LIGMKYLMA 532 (647)
Q Consensus 473 ~~~~~l~~lp~~~i~~l~~--L~~L~l~~~~~n~~~~~~~~~-----------------~~~~~~~~~~~-l~~l~~L~~ 532 (647)
++| .+..+|.. +..+.. |+.|++.+ |.+...++.+ ........+.. +..+++|+.
T Consensus 627 s~N-~L~~lp~~-~~~~~~~~L~~L~Ls~---N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~ 701 (876)
T 4ecn_A 627 SHN-KLKYIPNI-FNAKSVYVMGSVDFSY---NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701 (876)
T ss_dssp CSS-CCCSCCSC-CCTTCSSCEEEEECCS---SCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSE
T ss_pred cCC-CCCcCchh-hhccccCCCCEEECcC---CcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCE
Confidence 555 34455542 333322 44443332 2221111000 00000112222 235666666
Q ss_pred EEEEecchhhHHHHhhhh-----hhhhccceeeeeccCCCceEEEeccc--ccCCccEEEEcCCCCCCCChhhccccCCc
Q 039519 533 VTITLKRLQALQELLISQ-----ELQRCTQFLFLRCFNDSKSLDIFCLA--CLHNLNKLYVAGCKHLEDFQMIIQRSSLS 605 (647)
Q Consensus 533 L~l~~~~~~~l~~l~~~~-----~~~~~l~~l~L~~~~~L~~L~l~~~~--~l~~L~~L~L~~~~~~~~~~~~~~l~~L~ 605 (647)
|+++.|.++.++...... ..+++|+.|+|++ +++..++ ..+. .+++|+.|+|++|.+.+.++.+..+++|+
T Consensus 702 L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~-N~L~~lp-~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~ 779 (876)
T 4ecn_A 702 IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF-NKLTSLS-DDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLK 779 (876)
T ss_dssp EECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCS-SCCCCCC-GGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCC
T ss_pred EECCCCcCCccChHHhccccccccccCCccEEECCC-CCCccch-HHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCC
Confidence 666666554322100000 0112555666655 3444333 2233 66677777777665555333466667777
Q ss_pred eEEeeccc----ccccccchhhhhhhcCCCCcccCCCC
Q 039519 606 VHNLFINK----NYIHTNQLSILLGINRLPHFTKSNPY 639 (647)
Q Consensus 606 ~L~L~~~~----~~~~~~~~~~l~~l~~L~~L~~~~~~ 639 (647)
.|+|++|+ |.+....+..+..+++|+.|+..+..
T Consensus 780 ~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp EEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred EEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence 77776644 33333444456666666666555443
No 33
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.72 E-value=1.2e-17 Score=187.10 Aligned_cols=96 Identities=14% Similarity=0.243 Sum_probs=53.1
Q ss_pred EEecCCCcccCcc---ccccccEEEEEeeccccc-ccccCCCCcceeeEEeccCccccccCccccccccC-CCeeeecCC
Q 039519 378 LVHAGFGLTEAPE---IQNWRNVRRMSLMKNKIE-NLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVS-LEHLDLSST 452 (647)
Q Consensus 378 l~~~~~~~~~~~~---~~~~~~l~~L~l~~n~i~-~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~-L~~L~L~~~ 452 (647)
+...+..+..+|. +..+++|+.|++++|.+. .+| .+..+++|++|++++| .+..+|..++.+++ |++|++++|
T Consensus 310 L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp EECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSS
T ss_pred EECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCC
Confidence 3334444444443 555556666666666665 455 4455556666666666 44455555666665 666666666
Q ss_pred CCCccccchhcCc--cCcEEeeccc
Q 039519 453 AITHLPIDLQKLV--NLKCLNLQYM 475 (647)
Q Consensus 453 ~l~~lp~~~~~l~--~L~~L~l~~~ 475 (647)
.++.+|..++.++ +|++|++++|
T Consensus 388 ~l~~lp~~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 388 KLKYIPNIFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp CCSSCCSCCCTTCSSCEEEEECCSS
T ss_pred cCcccchhhhhcccCccCEEECcCC
Confidence 6655555544433 5555555555
No 34
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=5.4e-18 Score=193.76 Aligned_cols=228 Identities=15% Similarity=0.101 Sum_probs=149.5
Q ss_pred ccccccccEEEEEeecccccc------------------cccCCC--CcceeeEEeccCccccccCccccccccCCCeee
Q 039519 389 PEIQNWRNVRRMSLMKNKIEN------------------LSELQP--ALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLD 448 (647)
Q Consensus 389 ~~~~~~~~l~~L~l~~n~i~~------------------l~~~~~--~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~ 448 (647)
+.+.++++|+.|+|++|.+.. +|..+. ++++|++|++++|...+.+|..+++|++|++|+
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence 357788899999999999988 888877 889999999999877888898899999999999
Q ss_pred ecCCC-CC--ccccchhcCc-------cCcEEeecccccCCcCch--hhhcCCCCCcEEeccccCCCcccccccccccCC
Q 039519 449 LSSTA-IT--HLPIDLQKLV-------NLKCLNLQYMYNLNQFPR--LVISAFSKLQVLRMFDCGGSKIERLKSNVLFGG 516 (647)
Q Consensus 449 L~~~~-l~--~lp~~~~~l~-------~L~~L~l~~~~~l~~lp~--~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~ 516 (647)
|++|. ++ .+|..+++++ +|++|++++| .+..+|. . ++.+++|+.|++.+ |.+..+|
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~-l~~L~~L~~L~Ls~---N~l~~lp------- 589 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASAS-LQKMVKLGLLDCVH---NKVRHLE------- 589 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHH-HTTCTTCCEEECTT---SCCCBCC-------
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhh-hhcCCCCCEEECCC---CCcccch-------
Confidence 99997 87 4888777766 8999999998 6678887 5 88899999987765 4443333
Q ss_pred ccccHHHhhCCCCCcEEEEEecchhhHHHHhhhhhhhhc-cceeeeeccC--------------CCceEEEec-------
Q 039519 517 HQVLVEELIGMKYLMAVTITLKRLQALQELLISQELQRC-TQFLFLRCFN--------------DSKSLDIFC------- 574 (647)
Q Consensus 517 ~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~-l~~l~L~~~~--------------~L~~L~l~~------- 574 (647)
.++.+++|+.|+++.|.+.. ++.....+.+ |+.|+|+++. +|+.|++..
T Consensus 590 ------~~~~L~~L~~L~Ls~N~l~~---lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 590 ------AFGTNVKLTDLKLDYNQIEE---IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp ------CCCTTSEESEEECCSSCCSC---CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred ------hhcCCCcceEEECcCCcccc---chHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcc
Confidence 34455555555555554442 2222222333 5555554411 123333211
Q ss_pred ------cc--ccCCccEEEEcCCCCCCCChh-hccccCCceEEeecccccccccchhhh-------hhhcCCCCcccCCC
Q 039519 575 ------LA--CLHNLNKLYVAGCKHLEDFQM-IIQRSSLSVHNLFINKNYIHTNQLSIL-------LGINRLPHFTKSNP 638 (647)
Q Consensus 575 ------~~--~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~~l-------~~l~~L~~L~~~~~ 638 (647)
+. .+++|+.|+|++|.+...++. +..+++|+.|+|++|. +...+...+ .++++|+.|+..+.
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~--L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N 738 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL--MTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC--CSCCCTTSSSCTTSCCTTGGGCCEEECCSS
T ss_pred ccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc--CCccChHHhccccccccccCCccEEECCCC
Confidence 01 233777888887766544444 4577888888888753 332222122 23347777766554
Q ss_pred C
Q 039519 639 Y 639 (647)
Q Consensus 639 ~ 639 (647)
.
T Consensus 739 ~ 739 (876)
T 4ecn_A 739 K 739 (876)
T ss_dssp C
T ss_pred C
Confidence 3
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.72 E-value=1.4e-17 Score=188.69 Aligned_cols=123 Identities=16% Similarity=0.142 Sum_probs=89.6
Q ss_pred ceEEecCCCcccCccccccccEEEEEeecccccccccC-CCCcceeeEEeccCccccccCccccccccCCCeeeecCCCC
Q 039519 376 NFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSEL-QPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAI 454 (647)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l 454 (647)
..+.+.+.+++.+|... .+++++|++++|.+..++.. +.++++|++|++++|......|..++++++|++|++++|.+
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence 45667777777777532 36788888888888876653 57778888888888843333456677888888888888888
Q ss_pred Ccccc-chhcCccCcEEeecccccCCcCchhhhcCCCCCcEEecccc
Q 039519 455 THLPI-DLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDC 500 (647)
Q Consensus 455 ~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 500 (647)
+.+|. .++++++|++|++++| .+..+|+..++.+++|++|++.++
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 131 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHN 131 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSS
T ss_pred CccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCC
Confidence 88775 4788888888888887 566776544777888888866653
No 36
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=2.1e-17 Score=166.14 Aligned_cols=220 Identities=16% Similarity=0.137 Sum_probs=173.4
Q ss_pred EEEEeecccccccccCCCCcceeeEEeccCccccccCc-cccccccCCCeeeecCCCCCcc-ccchhcCccCcEEeeccc
Q 039519 398 RRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLP-LGISTLVSLEHLDLSSTAITHL-PIDLQKLVNLKCLNLQYM 475 (647)
Q Consensus 398 ~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~L~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~ 475 (647)
+.++..++.++.+|..+ .+.|+.|++++| .+..+| ..+..+++|++|++++|.++.+ |..++.+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56788888898888654 357999999999 566665 4689999999999999999977 678999999999999999
Q ss_pred ccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhhHHHHhhhhhhhhc
Q 039519 476 YNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQALQELLISQELQRC 555 (647)
Q Consensus 476 ~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~ 555 (647)
..+..++...+..+++|++|++.++ .+ ....+..++.+++|+.|+++.|.++.+.. .....+++
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n---~l-----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~ 154 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRC---GL-----------QELGPGLFRGLAALQYLYLQDNALQALPD--DTFRDLGN 154 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTS---CC-----------CCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTT
T ss_pred CCccccCHHHhcCCcCCCEEECCCC---cC-----------CEECHhHhhCCcCCCEEECCCCcccccCH--hHhccCCC
Confidence 5488885555889999999987764 44 22333447789999999999887765421 11234567
Q ss_pred cceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCCh-hhccccCCceEEeecccccccccchhhhhhhcCCCCcc
Q 039519 556 TQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQ-MIIQRSSLSVHNLFINKNYIHTNQLSILLGINRLPHFT 634 (647)
Q Consensus 556 l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~ 634 (647)
|+.|++++ +++..+....+..+++|++|+|++|......| +++.+++|+.|+|++| .+...+...+..+++|+.|+
T Consensus 155 L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~ 231 (285)
T 1ozn_A 155 LTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN--NLSALPTEALAPLRALQYLR 231 (285)
T ss_dssp CCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS--CCSCCCHHHHTTCTTCCEEE
T ss_pred ccEEECCC-CcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC--cCCcCCHHHcccCcccCEEe
Confidence 88888887 57777665558889999999999998777655 5899999999999995 46555666788999999987
Q ss_pred cCCCC
Q 039519 635 KSNPY 639 (647)
Q Consensus 635 ~~~~~ 639 (647)
..++.
T Consensus 232 l~~N~ 236 (285)
T 1ozn_A 232 LNDNP 236 (285)
T ss_dssp CCSSC
T ss_pred ccCCC
Confidence 76653
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=2.9e-17 Score=182.89 Aligned_cols=134 Identities=18% Similarity=0.269 Sum_probs=109.4
Q ss_pred ccccEEEEEeecccccccccCC-CCcceeeEEeccCccccccCc-cccccccCCCeeeecCCCCCcccc-chhcCccCcE
Q 039519 393 NWRNVRRMSLMKNKIENLSELQ-PALTFFLFFNMSNNHLLWKLP-LGISTLVSLEHLDLSSTAITHLPI-DLQKLVNLKC 469 (647)
Q Consensus 393 ~~~~l~~L~l~~n~i~~l~~~~-~~l~~L~~L~l~~~~~~~~lp-~~~~~L~~L~~L~L~~~~l~~lp~-~~~~l~~L~~ 469 (647)
.+.+++.+++.+|.+..+|... .++++|++|++++| .+..+| ..|+.+++|++|+|++|.++.+|+ .++++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 4678999999999999998764 77899999999999 555554 489999999999999999998875 5699999999
Q ss_pred EeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhh
Q 039519 470 LNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQA 542 (647)
Q Consensus 470 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 542 (647)
|+|++| .+..+|...++.+++|++|++.+ |.+..+ .+..++.+++|+.|+++.|.++.
T Consensus 128 L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~---N~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 128 LVLERN-DLSSLPRGIFHNTPKLTTLSMSN---NNLERI-----------EDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCS---SCCCBC-----------CTTTTTTCTTCCEEECTTSCCSB
T ss_pred EEeeCC-CCCCCCHHHhccCCCCCEEEeeC---CcCCCC-----------ChhhhhcCCcCcEEECcCCCCCC
Confidence 999999 78899988678999999998775 444333 33346677778888877666554
No 38
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.71 E-value=3.6e-17 Score=182.76 Aligned_cols=122 Identities=14% Similarity=0.182 Sum_probs=86.7
Q ss_pred ceEEecCCCcccCccccccccEEEEEeecccccccc-cCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCC
Q 039519 376 NFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLS-ELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAI 454 (647)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l 454 (647)
..+.+.+.+++.+|.-. .+.+++|++++|.++.++ ..+.++++|++|++++|......|..|+++++|++|++++|.+
T Consensus 15 ~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTL-PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TEEECTTSCCSSCCTTS-CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred ceEECCCCCcccCcCCC-CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 35666677777776522 357888888888887764 4567788888888888843344466778888888888888887
Q ss_pred Ccc-ccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccc
Q 039519 455 THL-PIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFD 499 (647)
Q Consensus 455 ~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 499 (647)
+.+ |..++++++|++|++++| .+..++...++.+++|++|++.+
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~ 138 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGS 138 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTS-CCSCGGGSCCTTCTTCCEEECCS
T ss_pred cccChhhhcccccccEeecccc-CcccCCcchhccCCcccEEECCC
Confidence 755 567778888888888887 56666443467777888876654
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.71 E-value=3.3e-17 Score=176.30 Aligned_cols=124 Identities=15% Similarity=0.211 Sum_probs=89.7
Q ss_pred cceEEecCCCcccC--ccccccccEEEEEeeccccc-ccc-cCCCCcceeeEEeccCccccccCccccccccCCCeeeec
Q 039519 375 ENFLVHAGFGLTEA--PEIQNWRNVRRMSLMKNKIE-NLS-ELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLS 450 (647)
Q Consensus 375 ~~~l~~~~~~~~~~--~~~~~~~~l~~L~l~~n~i~-~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~ 450 (647)
-+.+...+..+... ..+..+++|++|++++|.+. .++ ..+.++++|++|++++|......|..++++++|++|+++
T Consensus 32 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 111 (455)
T 3v47_A 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT 111 (455)
T ss_dssp CCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECT
T ss_pred cCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCC
Confidence 44555555555554 35777888888888888875 453 446788888888888884444447778888888888888
Q ss_pred CCCCCc-cccc--hhcCccCcEEeecccccCCcC-chhhhcCCCCCcEEeccc
Q 039519 451 STAITH-LPID--LQKLVNLKCLNLQYMYNLNQF-PRLVISAFSKLQVLRMFD 499 (647)
Q Consensus 451 ~~~l~~-lp~~--~~~l~~L~~L~l~~~~~l~~l-p~~~i~~l~~L~~L~l~~ 499 (647)
+|.++. .|.. ++++++|++|++++| .+..+ |...++.+++|++|++.+
T Consensus 112 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 112 QCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp TSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTT
T ss_pred CCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCC
Confidence 888874 4444 788888888888888 45555 544467888888887664
No 40
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=7.2e-17 Score=161.43 Aligned_cols=226 Identities=15% Similarity=0.081 Sum_probs=168.7
Q ss_pred eEEecCCCcccCccccccccEEEEEeeccccccccc-CCCCcceeeEEeccCccccccCcc-ccccccCCCeeeecCCCC
Q 039519 377 FLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSE-LQPALTFFLFFNMSNNHLLWKLPL-GISTLVSLEHLDLSSTAI 454 (647)
Q Consensus 377 ~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~L~~~~l 454 (647)
.+.+.+..+..+|... .+++++|++++|.+..++. .+.++++|++|++++| .+..++. .+..+++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCcc
Confidence 4566777777777632 3689999999999999876 5688999999999999 5666554 689999999999999999
Q ss_pred Cccc-cchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEE
Q 039519 455 THLP-IDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAV 533 (647)
Q Consensus 455 ~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 533 (647)
+.++ ..+.++++|++|++++| .+..++...++.+++|++|++.+ |.+.. ...+..++.+++|+.|
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~---n~l~~----------~~l~~~~~~l~~L~~L 154 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAH---NLIQS----------FKLPEYFSNLTNLEHL 154 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCS---SCCCC----------CCCCGGGGGCTTCCEE
T ss_pred CccChhhhcCCccccEEECCCC-CccccCchhcccCCCCCEEECcC---Cccce----------ecCchhhccCCCCCEE
Confidence 9776 67899999999999998 67777774488899999997775 44321 1234568889999999
Q ss_pred EEEecchhhHHHHhhhhhhhhccc----eeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChh-hccccCCceEE
Q 039519 534 TITLKRLQALQELLISQELQRCTQ----FLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQM-IIQRSSLSVHN 608 (647)
Q Consensus 534 ~l~~~~~~~l~~l~~~~~~~~~l~----~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~ 608 (647)
+++.|.++.+.. .....+..++ .+++++ +.+..+....+. ..+|++|+|++|.....++. +..+++|+.|+
T Consensus 155 ~Ls~N~l~~~~~--~~~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 230 (276)
T 2z62_A 155 DLSSNKIQSIYC--TDLRVLHQMPLLNLSLDLSL-NPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIW 230 (276)
T ss_dssp ECCSSCCCEECG--GGGHHHHTCTTCCEEEECCS-SCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEE
T ss_pred ECCCCCCCcCCH--HHhhhhhhccccceeeecCC-CcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEE
Confidence 999887765321 1122233444 667766 566666533233 44899999999987666665 78999999999
Q ss_pred eecccccccccchh
Q 039519 609 LFINKNYIHTNQLS 622 (647)
Q Consensus 609 L~~~~~~~~~~~~~ 622 (647)
|++|+-...++.+.
T Consensus 231 l~~N~~~c~c~~l~ 244 (276)
T 2z62_A 231 LHTNPWDCSCPRID 244 (276)
T ss_dssp CCSSCBCCCTTTTH
T ss_pred ccCCcccccCCchH
Confidence 99976443433333
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.71 E-value=5.1e-17 Score=174.26 Aligned_cols=200 Identities=19% Similarity=0.192 Sum_probs=143.0
Q ss_pred cceEEecCCCcccCccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCC
Q 039519 375 ENFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAI 454 (647)
Q Consensus 375 ~~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l 454 (647)
-+.+...+..+..+|.+..+++|++|++++|.+..+| +..+++|++|++++| .+..+| ++.+++|++|++++|.+
T Consensus 44 L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L~L~~N~l 118 (457)
T 3bz5_A 44 LTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTNKL 118 (457)
T ss_dssp CCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEECCSSCC
T ss_pred CCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcCCEEECCCCcC
Confidence 3456666667777788888899999999999998875 678888999999999 666665 88899999999999999
Q ss_pred CccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEE
Q 039519 455 THLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVT 534 (647)
Q Consensus 455 ~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 534 (647)
+.+| ++.+++|++|++++| .+..+| ++.+++|+.|++.++.. + +.. .++.+++|+.|+
T Consensus 119 ~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~--~------------~~~--~~~~l~~L~~L~ 176 (457)
T 3bz5_A 119 TKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKK--I------------TKL--DVTPQTQLTTLD 176 (457)
T ss_dssp SCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSC--C------------CCC--CCTTCTTCCEEE
T ss_pred Ceec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCc--c------------ccc--ccccCCcCCEEE
Confidence 8886 788899999999988 667774 67888888887765422 1 111 256677788888
Q ss_pred EEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChhhccccCCceEEeecc
Q 039519 535 ITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQMIIQRSSLSVHNLFIN 612 (647)
Q Consensus 535 l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~ 612 (647)
++.|.++.++ ....++|+.|.+++ +++..++ ++.+++|++|+|++|...+ +| ++.+++|++|++++|
T Consensus 177 ls~n~l~~l~-----l~~l~~L~~L~l~~-N~l~~~~---l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 177 CSFNKITELD-----VSQNKLLNRLNCDT-NNITKLD---LNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVN 243 (457)
T ss_dssp CCSSCCCCCC-----CTTCTTCCEEECCS-SCCSCCC---CTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSS
T ss_pred CCCCccceec-----cccCCCCCEEECcC-CcCCeec---cccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCC
Confidence 8777666542 22334566666655 3444442 5566677777777665444 44 666667777777664
No 42
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=3.6e-17 Score=163.01 Aligned_cols=199 Identities=22% Similarity=0.219 Sum_probs=123.5
Q ss_pred ceEEecCCCcccCccccccccEEEEEeeccccccccc-CCCCcceeeEEeccCccccccCccc-cccccCCCeeeecCCC
Q 039519 376 NFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSE-LQPALTFFLFFNMSNNHLLWKLPLG-ISTLVSLEHLDLSSTA 453 (647)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~~-~~~L~~L~~L~L~~~~ 453 (647)
..+.+.+..++.+|... .++++.|++++|.+..++. .+.++++|++|++++| .+..+|.. +..+++|++|++++|.
T Consensus 19 ~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 19 NSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred CEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCc
Confidence 34555555666655422 2466777777777766654 3466667777777776 45555544 3566777777777777
Q ss_pred CCcccc-chhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcE
Q 039519 454 ITHLPI-DLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMA 532 (647)
Q Consensus 454 l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 532 (647)
++.+|. .+..+++|++|++++| .+..+|...++.+++|++|++.+ |.+..++.. .++.+++|+.
T Consensus 97 l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~---n~l~~~~~~-----------~~~~l~~L~~ 161 (270)
T 2o6q_A 97 LQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGY---NELQSLPKG-----------VFDKLTSLKE 161 (270)
T ss_dssp CCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS---SCCCCCCTT-----------TTTTCTTCCE
T ss_pred CCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCC---CcCCccCHh-----------HccCCcccce
Confidence 766653 3466677777777766 55666655456666676665554 333222221 2445556666
Q ss_pred EEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChh-hccccCCceEEeec
Q 039519 533 VTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQM-IIQRSSLSVHNLFI 611 (647)
Q Consensus 533 L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~ 611 (647)
|+++.| .+..+....+..+++|++|+|++|.....++. +..+++|+.|+|++
T Consensus 162 L~L~~n---------------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 162 LRLYNN---------------------------QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp EECCSS---------------------------CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred eEecCC---------------------------cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence 665533 33333323367788999999999976665554 88899999999999
Q ss_pred ccccccc
Q 039519 612 NKNYIHT 618 (647)
Q Consensus 612 ~~~~~~~ 618 (647)
|+-...+
T Consensus 215 N~~~c~c 221 (270)
T 2o6q_A 215 NPWDCTC 221 (270)
T ss_dssp SCBCCSS
T ss_pred CCeeCCC
Confidence 7644443
No 43
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=3e-17 Score=166.87 Aligned_cols=191 Identities=17% Similarity=0.207 Sum_probs=113.7
Q ss_pred cccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccchhcCccCcEEe
Q 039519 392 QNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLVNLKCLN 471 (647)
Q Consensus 392 ~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~ 471 (647)
..+++++.|++.+|.+..++ .+..+++|++|++++| .+..+|. +..+++|++|++++|.++.+| .+..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 34556666666666666554 3455566666666666 5555554 666666666666666666654 466666666666
Q ss_pred ecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhhHHHHhhhhh
Q 039519 472 LQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQALQELLISQE 551 (647)
Q Consensus 472 l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~ 551 (647)
+++| .+..+|. +..+++|++|++.++ .+..++ .++.+++|+.|+++.|.++.+.. ..
T Consensus 114 l~~n-~l~~~~~--l~~l~~L~~L~l~~n---~l~~~~-------------~l~~l~~L~~L~l~~n~l~~~~~----l~ 170 (308)
T 1h6u_A 114 LTST-QITDVTP--LAGLSNLQVLYLDLN---QITNIS-------------PLAGLTNLQYLSIGNAQVSDLTP----LA 170 (308)
T ss_dssp CTTS-CCCCCGG--GTTCTTCCEEECCSS---CCCCCG-------------GGGGCTTCCEEECCSSCCCCCGG----GT
T ss_pred CCCC-CCCCchh--hcCCCCCCEEECCCC---ccCcCc-------------cccCCCCccEEEccCCcCCCChh----hc
Confidence 6666 4555554 566666666655442 221111 15556666666666555544322 22
Q ss_pred hhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChhhccccCCceEEeeccc
Q 039519 552 LQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQMIIQRSSLSVHNLFINK 613 (647)
Q Consensus 552 ~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~ 613 (647)
.+.+|+.|++++ +++..+. .+..+++|++|+|++|.....+ .+..+++|+.|+|++|+
T Consensus 171 ~l~~L~~L~l~~-n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 171 NLSKLTTLKADD-NKISDIS--PLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp TCTTCCEEECCS-SCCCCCG--GGGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEE
T ss_pred CCCCCCEEECCC-CccCcCh--hhcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCe
Confidence 233455555554 3444332 2677888999999988655444 58888999999998854
No 44
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.70 E-value=1.5e-16 Score=171.61 Aligned_cols=245 Identities=16% Similarity=0.207 Sum_probs=123.9
Q ss_pred ceEEecCCCcccCccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCC
Q 039519 376 NFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAIT 455 (647)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~ 455 (647)
+.+...+..+...+.+..+++|++|++++|.+..++. +.++++|++|++++| .+..+|. +..+++|++|++++|.++
T Consensus 71 ~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~l~ 147 (466)
T 1o6v_A 71 TQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN-QITDIDP-LKNLTNLNRLELSSNTIS 147 (466)
T ss_dssp CEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSEEEEEEEEEC
T ss_pred CEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC-CCCCChH-HcCCCCCCEEECCCCccC
Confidence 3455555555555556666677777777776666555 566666667777666 5555553 666666666666666655
Q ss_pred cccc--------------------chhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccc----
Q 039519 456 HLPI--------------------DLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSN---- 511 (647)
Q Consensus 456 ~lp~--------------------~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~---- 511 (647)
.+|. .++++++|++|++++| .+..++. +..+++|++|++.++. +..+++.
T Consensus 148 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~---l~~~~~~~~l~ 221 (466)
T 1o6v_A 148 DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVSDISV--LAKLTNLESLIATNNQ---ISDITPLGILT 221 (466)
T ss_dssp CCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSC---CCCCGGGGGCT
T ss_pred CChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCC-cCCCChh--hccCCCCCEEEecCCc---ccccccccccC
Confidence 5442 1344455555555555 3444443 4555555555444322 2111110
Q ss_pred -c----ccCCccccHHHhhCCCCCcEEEEEecchhhHHHHhhhhhhhhccceeeeec-----------cCCCceEEEec-
Q 039519 512 -V----LFGGHQVLVEELIGMKYLMAVTITLKRLQALQELLISQELQRCTQFLFLRC-----------FNDSKSLDIFC- 574 (647)
Q Consensus 512 -~----~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~-----------~~~L~~L~l~~- 574 (647)
+ ..+..-.....+..+++|+.|+++.|.+..+.. ....++|+.|++++ +++|+.|++..
T Consensus 222 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n 297 (466)
T 1o6v_A 222 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN 297 (466)
T ss_dssp TCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred CCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh----hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCC
Confidence 0 000000111235556666666666555444322 12233455555443 22444444422
Q ss_pred -------ccccCCccEEEEcCCCCCCCChhhccccCCceEEeecccccccccchhhhhhhcCCCCcccCCC
Q 039519 575 -------LACLHNLNKLYVAGCKHLEDFQMIIQRSSLSVHNLFINKNYIHTNQLSILLGINRLPHFTKSNP 638 (647)
Q Consensus 575 -------~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~~~~~ 638 (647)
+..+++|++|+|++|...+.+| ++.+++|+.|++++|+ +.. .+.+..+++|+.|+..+.
T Consensus 298 ~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~--l~~--~~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 298 QLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK--VSD--VSSLANLTNINWLSAGHN 363 (466)
T ss_dssp CCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC--CCC--CGGGTTCTTCCEEECCSS
T ss_pred cccCchhhcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCc--cCC--chhhccCCCCCEEeCCCC
Confidence 4455566666666664433333 5566666666666642 221 234556666666655443
No 45
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.70 E-value=4.9e-17 Score=186.35 Aligned_cols=226 Identities=14% Similarity=0.070 Sum_probs=170.5
Q ss_pred cccEEEEEeecccccc-cccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCC-ccccchhcCccCcEEe
Q 039519 394 WRNVRRMSLMKNKIEN-LSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAIT-HLPIDLQKLVNLKCLN 471 (647)
Q Consensus 394 ~~~l~~L~l~~n~i~~-l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~ 471 (647)
+++++.|++.+|.+.. +|..+.++++|++|++++|.....+|..++.+++|++|++++|.++ .+|..++.+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 5678888888888874 6666777888888888888555577888888888888888888887 7788888888888888
Q ss_pred ecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhhHHHHhhhhh
Q 039519 472 LQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQALQELLISQE 551 (647)
Q Consensus 472 l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~ 551 (647)
+++|.....+|.. ++.+++|+.|++.++. + .+..+..++.+++|+.|+++.|.+.+. ++....
T Consensus 473 L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~---l-----------~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~l~ 535 (768)
T 3rgz_A 473 LDFNDLTGEIPSG-LSNCTNLNWISLSNNR---L-----------TGEIPKWIGRLENLAILKLSNNSFSGN--IPAELG 535 (768)
T ss_dssp CCSSCCCSCCCGG-GGGCTTCCEEECCSSC---C-----------CSCCCGGGGGCTTCCEEECCSSCCEEE--CCGGGG
T ss_pred ecCCcccCcCCHH-HhcCCCCCEEEccCCc---c-----------CCcCChHHhcCCCCCEEECCCCcccCc--CCHHHc
Confidence 8888544467776 7888888888776543 3 455666788899999999998877532 233344
Q ss_pred hhhccceeeeeccCCCc-eE------------------------------------------------------------
Q 039519 552 LQRCTQFLFLRCFNDSK-SL------------------------------------------------------------ 570 (647)
Q Consensus 552 ~~~~l~~l~L~~~~~L~-~L------------------------------------------------------------ 570 (647)
.+++|+.|++++++ +. .+
T Consensus 536 ~l~~L~~L~Ls~N~-l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (768)
T 3rgz_A 536 DCRSLIWLDLNTNL-FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614 (768)
T ss_dssp GCTTCCEEECCSSE-EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred CCCCCCEEECCCCc-cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccc
Confidence 45677777776521 11 00
Q ss_pred ----EE-----ecccccCCccEEEEcCCCCCCCChh-hccccCCceEEeecccccccccchhhhhhhcCCCCcccCCCC
Q 039519 571 ----DI-----FCLACLHNLNKLYVAGCKHLEDFQM-IIQRSSLSVHNLFINKNYIHTNQLSILLGINRLPHFTKSNPY 639 (647)
Q Consensus 571 ----~l-----~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~ 639 (647)
.+ ..+..+++|+.|+|++|.+.+.+|. ++.+++|+.|+|++ |.+....+..++++++|+.|+.+++.
T Consensus 615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~--N~l~g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH--NDISGSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp TTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCS--SCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred cccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcC--CccCCCCChHHhCCCCCCEEECCCCc
Confidence 00 1145578999999999998888874 99999999999999 55777777889999999999887654
No 46
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.70 E-value=5.6e-17 Score=181.18 Aligned_cols=248 Identities=16% Similarity=0.140 Sum_probs=131.9
Q ss_pred EEecCCCcccCcc--ccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccC-ccccccccCCCeeeecCCCC
Q 039519 378 LVHAGFGLTEAPE--IQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKL-PLGISTLVSLEHLDLSSTAI 454 (647)
Q Consensus 378 l~~~~~~~~~~~~--~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~L~L~~~~l 454 (647)
+...+..+..++. +..+++|++|++++|.+..+|..+.++++|++|++++| .+..+ |..++.+++|++|++++|.+
T Consensus 259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp EECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred EEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCc
Confidence 3334444444433 56667777777777777777777777777777777777 34333 45667777777777777766
Q ss_pred C-ccccc-hhcCccCcEEeecccccCCcCc--hhhhcCCCCCcEEeccccCCCcccccccccccC------------C-c
Q 039519 455 T-HLPID-LQKLVNLKCLNLQYMYNLNQFP--RLVISAFSKLQVLRMFDCGGSKIERLKSNVLFG------------G-H 517 (647)
Q Consensus 455 ~-~lp~~-~~~l~~L~~L~l~~~~~l~~lp--~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~------------~-~ 517 (647)
. .+|.. ++.+++|++|++++| .+..++ ...++.+++|++|++.+ |.+..+++..+.. . .
T Consensus 338 ~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~---n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 338 RLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSY---NEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp CCBCCSSTTTTCTTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCS---CSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred ccccchhhhhccCcCCEEECCCC-ccccccCcchhcccCCCCCEEECCC---CcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 5 55543 666777777777776 444442 11256666777765554 3332222211100 0 0
Q ss_pred cccH-HHhhCCCCCcEEEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEE---ecccccCCccEEEEcCCCCCC
Q 039519 518 QVLV-EELIGMKYLMAVTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDI---FCLACLHNLNKLYVAGCKHLE 593 (647)
Q Consensus 518 ~~~~-~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l---~~~~~l~~L~~L~L~~~~~~~ 593 (647)
...+ ..++.+++|+.|+++.|.+.... +.....+++|+.|+++++ ++....+ ..+..+++|++|+|++|...+
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISS--EQLFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTC--TTTTTTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred CcccchhhhCcccCCEEECCCCccCCcC--HHHHhCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCCccCc
Confidence 1111 12556667777777665544321 111222345555555542 2322111 124555666666666665544
Q ss_pred CCh-hhccccCCceEEeecccccccccchhhhhhhcCCCCcccC
Q 039519 594 DFQ-MIIQRSSLSVHNLFINKNYIHTNQLSILLGINRLPHFTKS 636 (647)
Q Consensus 594 ~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~~~ 636 (647)
.+| .++.+++|+.|+|++| .+....+..+.+++.| .|+..
T Consensus 491 ~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~l~~l~~L-~L~L~ 531 (606)
T 3t6q_A 491 IDQHAFTSLKMMNHVDLSHN--RLTSSSIEALSHLKGI-YLNLA 531 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSS--CCCGGGGGGGTTCCSC-EEECC
T ss_pred cChhhhccccCCCEEECCCC--ccCcCChhHhCccccc-EEECc
Confidence 444 3566666666666663 2333344445555555 44433
No 47
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.70 E-value=1.8e-16 Score=177.01 Aligned_cols=122 Identities=20% Similarity=0.243 Sum_probs=86.4
Q ss_pred cceEEecCCCcccCc--cccccccEEEEEeecccccccc-cCCCCcceeeEEeccCccccccC-ccccccccCCCeeeec
Q 039519 375 ENFLVHAGFGLTEAP--EIQNWRNVRRMSLMKNKIENLS-ELQPALTFFLFFNMSNNHLLWKL-PLGISTLVSLEHLDLS 450 (647)
Q Consensus 375 ~~~l~~~~~~~~~~~--~~~~~~~l~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~L~L~ 450 (647)
-+.+...+..++.++ .+.++++|++|++++|.+..++ ..+.++++|++|++++| .+..+ |..|+++++|++|+++
T Consensus 34 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~ 112 (606)
T 3vq2_A 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAV 112 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEECT
T ss_pred cCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEEcc
Confidence 344555555555543 3667778888888888877764 34577788888888888 44444 6677888888888888
Q ss_pred CCCCCccc-cchhcCccCcEEeecccccCC--cCchhhhcCCCCCcEEeccc
Q 039519 451 STAITHLP-IDLQKLVNLKCLNLQYMYNLN--QFPRLVISAFSKLQVLRMFD 499 (647)
Q Consensus 451 ~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~--~lp~~~i~~l~~L~~L~l~~ 499 (647)
+|.++.+| ..++++++|++|++++| .+. .+|.. ++++++|++|++.+
T Consensus 113 ~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~Ls~ 162 (606)
T 3vq2_A 113 ETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSY 162 (606)
T ss_dssp TSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGG-GGTCTTCCEEECCS
T ss_pred CCccccccccccCCCCCCCEEeCCCC-cccceechHh-HhhcCCCCEEEccC
Confidence 88887666 56778888888888887 444 46765 77888888886665
No 48
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=175.04 Aligned_cols=118 Identities=21% Similarity=0.234 Sum_probs=76.0
Q ss_pred ceEEecCCCcccCccccccccEEEEEeeccccccccc-CCCCcceeeEEeccCccccccC-ccccccccCCCeeeecCCC
Q 039519 376 NFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSE-LQPALTFFLFFNMSNNHLLWKL-PLGISTLVSLEHLDLSSTA 453 (647)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~L~L~~~~ 453 (647)
+.+...+..++.+|.... +++++|++++|.+..++. .+.++++|++|++++| .+..+ |..|+++++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCc
Confidence 345555666666664222 677777777777766553 4566777777777777 34443 5567777777777777777
Q ss_pred CCccccchhcCccCcEEeecccccCCc--CchhhhcCCCCCcEEeccc
Q 039519 454 ITHLPIDLQKLVNLKCLNLQYMYNLNQ--FPRLVISAFSKLQVLRMFD 499 (647)
Q Consensus 454 l~~lp~~~~~l~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~ 499 (647)
++.+|.. .+++|++|++++| .+.. +|.. ++.+++|++|++.+
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N-~l~~~~~p~~-~~~l~~L~~L~L~~ 124 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFN-AFDALPICKE-FGNMSQLKFLGLST 124 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSS-CCSSCCCCGG-GGGCTTCCEEEEEE
T ss_pred eeecCcc--ccCCccEEeccCC-ccccccchhh-hccCCcceEEEecC
Confidence 7777755 6777777777776 4443 4454 66777777776665
No 49
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=5.1e-17 Score=163.52 Aligned_cols=197 Identities=21% Similarity=0.187 Sum_probs=114.3
Q ss_pred eEEecCCCcccCccccccccEEEEEeecccccccc-cCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCC
Q 039519 377 FLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLS-ELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAIT 455 (647)
Q Consensus 377 ~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~ 455 (647)
.+.+.+.+++.+|... .++++.|++++|.+..++ ..+.++++|++|++++| .+..+|.. +.+++|++|++++|.++
T Consensus 14 ~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~N~l~ 90 (290)
T 1p9a_G 14 EVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSHNQLQ 90 (290)
T ss_dssp EEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCSSCCS
T ss_pred EEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCCCcCC
Confidence 3444455555554322 245666666666665543 23455566666666666 44444432 55666666666666666
Q ss_pred ccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEE
Q 039519 456 HLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTI 535 (647)
Q Consensus 456 ~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 535 (647)
.+|..+..+++|++|++++| .+..+|.+.+..+++|++|++.+ |++..+++.+ +..+++|+.|++
T Consensus 91 ~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~---N~l~~~~~~~-----------~~~l~~L~~L~L 155 (290)
T 1p9a_G 91 SLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKG---NELKTLPPGL-----------LTPTPKLEKLSL 155 (290)
T ss_dssp SCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTT---SCCCCCCTTT-----------TTTCTTCCEEEC
T ss_pred cCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCC---CCCCccChhh-----------cccccCCCEEEC
Confidence 66655666666666666665 45555544455566666664443 3333332221 334444555544
Q ss_pred EecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChhhccccCCceEEeeccccc
Q 039519 536 TLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQMIIQRSSLSVHNLFINKNY 615 (647)
Q Consensus 536 ~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 615 (647)
+ + +++..++...+..+++|++|+|++|.+...++.+..+++|+.|+|++|+-.
T Consensus 156 ~--------------------------~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 156 A--------------------------N-NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp T--------------------------T-SCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred C--------------------------C-CcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 4 3 345544433467789999999999977655556777889999999997744
Q ss_pred ccc
Q 039519 616 IHT 618 (647)
Q Consensus 616 ~~~ 618 (647)
..+
T Consensus 209 C~c 211 (290)
T 1p9a_G 209 CNC 211 (290)
T ss_dssp CSG
T ss_pred CcC
Confidence 443
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.69 E-value=9.2e-17 Score=165.11 Aligned_cols=217 Identities=18% Similarity=0.179 Sum_probs=165.5
Q ss_pred cEEEEEeecccccccccCCCCcceeeEEeccCccccccCcc-ccccccCCCeeeecCCCCCcc-ccchhcCccCcEEeec
Q 039519 396 NVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPL-GISTLVSLEHLDLSSTAITHL-PIDLQKLVNLKCLNLQ 473 (647)
Q Consensus 396 ~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~ 473 (647)
+++.++++++.++.+|..++ +.+++|++++| .+..+|. .++.+++|++|++++|.++.+ |..++++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 67889999999999887654 57899999999 6666665 689999999999999999977 7889999999999999
Q ss_pred ccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhhHHHHhhhhhhh
Q 039519 474 YMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQALQELLISQELQ 553 (647)
Q Consensus 474 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~ 553 (647)
+| .+..+|.. + .++|++|++.+ |.+ .......+..+++|+.|+++.|.+......+.....+
T Consensus 109 ~n-~l~~l~~~-~--~~~L~~L~l~~---n~l-----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 170 (330)
T 1xku_A 109 KN-QLKELPEK-M--PKTLQELRVHE---NEI-----------TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170 (330)
T ss_dssp SS-CCSBCCSS-C--CTTCCEEECCS---SCC-----------CBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC
T ss_pred CC-cCCccChh-h--cccccEEECCC---Ccc-----------cccCHhHhcCCccccEEECCCCcCCccCcChhhccCC
Confidence 98 78899986 3 37999998775 444 3444556889999999999988765422122223344
Q ss_pred hccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCCh-hhccccCCceEEeecccccccccchhhhhhhcCCCC
Q 039519 554 RCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQ-MIIQRSSLSVHNLFINKNYIHTNQLSILLGINRLPH 632 (647)
Q Consensus 554 ~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~ 632 (647)
++|+.|.+++ +++..++. ..+++|++|+|++|......| .+..+++|++|+|++| .+.......+..+++|+.
T Consensus 171 ~~L~~L~l~~-n~l~~l~~---~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~ 244 (330)
T 1xku_A 171 KKLSYIRIAD-TNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN--SISAVDNGSLANTPHLRE 244 (330)
T ss_dssp TTCCEEECCS-SCCCSCCS---SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS--CCCEECTTTGGGSTTCCE
T ss_pred CCcCEEECCC-CccccCCc---cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC--cCceeChhhccCCCCCCE
Confidence 5667777766 34554442 224899999999997766655 5899999999999995 455555556888888888
Q ss_pred cccCCCC
Q 039519 633 FTKSNPY 639 (647)
Q Consensus 633 L~~~~~~ 639 (647)
|+..+..
T Consensus 245 L~L~~N~ 251 (330)
T 1xku_A 245 LHLNNNK 251 (330)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 8766554
No 51
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.69 E-value=3e-16 Score=173.50 Aligned_cols=98 Identities=24% Similarity=0.304 Sum_probs=67.9
Q ss_pred cceEEecCCCcccCc--cccccccEEEEEeeccccccc-ccCCCCcceeeEEeccCccccccCccccccccCCCeeeecC
Q 039519 375 ENFLVHAGFGLTEAP--EIQNWRNVRRMSLMKNKIENL-SELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSS 451 (647)
Q Consensus 375 ~~~l~~~~~~~~~~~--~~~~~~~l~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~ 451 (647)
-+.+...+..+..++ .+..+++|++|++++|.++.+ |..+.++++|++|++++| .+..+|.. .+++|++|++++
T Consensus 54 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~Ls~ 130 (562)
T 3a79_B 54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PMASLRHLDLSF 130 (562)
T ss_dssp CCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CCTTCSEEECCS
T ss_pred cCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--ccccCCEEECCC
Confidence 344555555555554 466777777777777777776 344577777777777777 56677755 677777777777
Q ss_pred CCCCccc--cchhcCccCcEEeeccc
Q 039519 452 TAITHLP--IDLQKLVNLKCLNLQYM 475 (647)
Q Consensus 452 ~~l~~lp--~~~~~l~~L~~L~l~~~ 475 (647)
|.++.+| ..++++++|++|++++|
T Consensus 131 N~l~~l~~p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 131 NDFDVLPVCKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp SCCSBCCCCGGGGGCTTCCEEEEECS
T ss_pred CCccccCchHhhcccCcccEEecCCC
Confidence 7777654 56777777777777776
No 52
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=1.3e-17 Score=169.87 Aligned_cols=225 Identities=15% Similarity=0.095 Sum_probs=161.8
Q ss_pred cEEEEEeecccccc--cccCCC-------CcceeeEEeccCccccccCcccc--ccccCCCeeeecCCCCCccccchhcC
Q 039519 396 NVRRMSLMKNKIEN--LSELQP-------ALTFFLFFNMSNNHLLWKLPLGI--STLVSLEHLDLSSTAITHLPIDLQKL 464 (647)
Q Consensus 396 ~l~~L~l~~n~i~~--l~~~~~-------~l~~L~~L~l~~~~~~~~lp~~~--~~L~~L~~L~L~~~~l~~lp~~~~~l 464 (647)
.++.|++++|.+.. +|.... ++++|++|++++|.....+|..+ +.+++|++|++++|.++.+|..++.+
T Consensus 64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l 143 (312)
T 1wwl_A 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAEL 143 (312)
T ss_dssp HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHH
T ss_pred HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHH
Confidence 37778888888754 333323 57889999999995445778776 88999999999999999888888877
Q ss_pred -----ccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHh--hCCCCCcEEEEEe
Q 039519 465 -----VNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEEL--IGMKYLMAVTITL 537 (647)
Q Consensus 465 -----~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~ 537 (647)
++|++|++++| .+..++...++.+++|++|++.++ ++.+ ....+..+ +.+++|+.|+++.
T Consensus 144 ~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N---~l~~---------~~~~~~~~~~~~l~~L~~L~L~~ 210 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDN---PELG---------ERGLISALCPLKFPTLQVLALRN 210 (312)
T ss_dssp HTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSC---TTCH---------HHHHHHHSCTTSCTTCCEEECTT
T ss_pred HHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCC---CcCc---------chHHHHHHHhccCCCCCEEECCC
Confidence 89999999998 677777545888999999977653 3211 01123334 7888999999998
Q ss_pred cchhhHHHHhhhh-hhhhccceeeeeccCCCceEE-EecccccCCccEEEEcCCCCCCCChhhccccCCceEEeeccccc
Q 039519 538 KRLQALQELLISQ-ELQRCTQFLFLRCFNDSKSLD-IFCLACLHNLNKLYVAGCKHLEDFQMIIQRSSLSVHNLFINKNY 615 (647)
Q Consensus 538 ~~~~~l~~l~~~~-~~~~~l~~l~L~~~~~L~~L~-l~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 615 (647)
|.++.+..+.... ..+++|+.|++++ +++.... ...+..+++|++|+|++|.+...++++. ++|++|+|++| .
T Consensus 211 N~l~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N--~ 285 (312)
T 1wwl_A 211 AGMETPSGVCSALAAARVQLQGLDLSH-NSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYN--R 285 (312)
T ss_dssp SCCCCHHHHHHHHHHTTCCCSEEECTT-SCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSS--C
T ss_pred CcCcchHHHHHHHHhcCCCCCEEECCC-CcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCC--C
Confidence 8888665544332 3446788888887 5666543 3345668999999999997664444455 88999999995 3
Q ss_pred ccccchhhhhhhcCCCCcccCCCCc
Q 039519 616 IHTNQLSILLGINRLPHFTKSNPYH 640 (647)
Q Consensus 616 ~~~~~~~~l~~l~~L~~L~~~~~~~ 640 (647)
+... +.+..+++|+.|+..++.+
T Consensus 286 l~~~--p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 286 LDRN--PSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CCSC--CCTTTSCEEEEEECTTCTT
T ss_pred CCCC--hhHhhCCCCCEEeccCCCC
Confidence 4433 3377888888887776543
No 53
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.68 E-value=3.4e-16 Score=171.42 Aligned_cols=116 Identities=15% Similarity=0.126 Sum_probs=76.6
Q ss_pred HHHhhCCCCCcEEEEEecchhhHHHHhhhhhhhhccceeeeec--------------cCCCceEEEec-------cccc-
Q 039519 521 VEELIGMKYLMAVTITLKRLQALQELLISQELQRCTQFLFLRC--------------FNDSKSLDIFC-------LACL- 578 (647)
Q Consensus 521 ~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~--------------~~~L~~L~l~~-------~~~l- 578 (647)
+..++.+++|+.|+++.|.++.+..++.....+++|+.|++++ +++|++|++.. ...+
T Consensus 341 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 420 (520)
T 2z7x_B 341 FENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP 420 (520)
T ss_dssp TTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC
T ss_pred hhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc
Confidence 4556777888888888888877766655555566777777765 23455555533 1222
Q ss_pred CCccEEEEcCCCCCCCChhhccccCCceEEeecccccccccchhhhhhhcCCCCcccCCC
Q 039519 579 HNLNKLYVAGCKHLEDFQMIIQRSSLSVHNLFINKNYIHTNQLSILLGINRLPHFTKSNP 638 (647)
Q Consensus 579 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~~~~~ 638 (647)
++|+.|+|++|.....++.+..+++|++|+|++| .+...+...+..+++|+.|+..+.
T Consensus 421 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N--~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 421 PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN--QLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCCEEECCCCcccccchhhhcCCCCCEEECCCC--cCCccCHHHhccCCcccEEECcCC
Confidence 5888888888866544445678888888888885 344333334777888887766654
No 54
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=7e-17 Score=157.83 Aligned_cols=204 Identities=13% Similarity=0.111 Sum_probs=143.6
Q ss_pred cccCccccccccEEEEEeeccccccccc-CCCCcceeeEEeccCccccccCcc-ccccccCCCeeeecC-CCCCccc-cc
Q 039519 385 LTEAPEIQNWRNVRRMSLMKNKIENLSE-LQPALTFFLFFNMSNNHLLWKLPL-GISTLVSLEHLDLSS-TAITHLP-ID 460 (647)
Q Consensus 385 ~~~~~~~~~~~~l~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~L~~-~~l~~lp-~~ 460 (647)
++.+|. -..+++.|++++|+++.+|. .+.++++|++|++++|..++.+|. .+.++++|++|++++ |.++.+| ..
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 677777 34589999999999999887 468899999999999943777765 688999999999998 8999887 46
Q ss_pred hhcCccCcEEeecccccCCcCchhhhcCCCCCc---EEeccccCCC-cccccccccccCCccccHHHhhCCCCCc-EEEE
Q 039519 461 LQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQ---VLRMFDCGGS-KIERLKSNVLFGGHQVLVEELIGMKYLM-AVTI 535 (647)
Q Consensus 461 ~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~---~L~l~~~~~n-~~~~~~~~~~~~~~~~~~~~l~~l~~L~-~L~l 535 (647)
+.++++|++|++++| .+..+|. ++.+++|+ .|++.+ | .+..++.. .++.+++|+ .|++
T Consensus 101 f~~l~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~~L~l~~---N~~l~~i~~~-----------~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 101 LKELPLLKFLGIFNT-GLKMFPD--LTKVYSTDIFFILEITD---NPYMTSIPVN-----------AFQGLCNETLTLKL 163 (239)
T ss_dssp EECCTTCCEEEEEEE-CCCSCCC--CTTCCBCCSEEEEEEES---CTTCCEECTT-----------TTTTTBSSEEEEEC
T ss_pred hCCCCCCCEEeCCCC-CCccccc--cccccccccccEEECCC---CcchhhcCcc-----------cccchhcceeEEEc
Confidence 789999999999998 6788987 78888888 776654 5 55444432 366788888 8888
Q ss_pred EecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEeccccc-CCccEEEEcCCCCCCCChhhccccCCceEEeecc
Q 039519 536 TLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACL-HNLNKLYVAGCKHLEDFQMIIQRSSLSVHNLFIN 612 (647)
Q Consensus 536 ~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l-~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~ 612 (647)
+.|.++.++. ......+|+.|++++..++..+....+..+ ++|+.|+|++|.....++. .+++|+.|+++++
T Consensus 164 ~~n~l~~i~~---~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 164 YNNGFTSVQG---YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CSCCCCEECT---TTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CCCCCcccCH---hhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 8666554321 111113566666665334665554445556 6666666666644433322 4556666666554
No 55
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.68 E-value=1.7e-16 Score=174.97 Aligned_cols=124 Identities=18% Similarity=0.223 Sum_probs=84.7
Q ss_pred ceEEecCCCcccC--ccccccccEEEEEeecccccccc-cCCCCcceeeEEeccCccccccCccc-cccccCCCeeeecC
Q 039519 376 NFLVHAGFGLTEA--PEIQNWRNVRRMSLMKNKIENLS-ELQPALTFFLFFNMSNNHLLWKLPLG-ISTLVSLEHLDLSS 451 (647)
Q Consensus 376 ~~l~~~~~~~~~~--~~~~~~~~l~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~L~~L~~L~L~~ 451 (647)
+.+...+..++.. ..+..+++|++|++++|.+..++ ..+.++++|++|++++| .+..+|+. ++++++|++|++++
T Consensus 29 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~ 107 (549)
T 2z81_A 29 KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMG 107 (549)
T ss_dssp CEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTT
T ss_pred cEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCC
Confidence 3444444444443 34667778888888888877765 34577777888888887 55555544 77788888888888
Q ss_pred CCCCc--cccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEecccc
Q 039519 452 TAITH--LPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDC 500 (647)
Q Consensus 452 ~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 500 (647)
|.++. .|..++++++|++|++++|..+..+|...++.+++|++|++.++
T Consensus 108 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred CcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 87774 45667778888888888775466676544677777777766653
No 56
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.68 E-value=6.1e-16 Score=171.07 Aligned_cols=119 Identities=20% Similarity=0.253 Sum_probs=102.0
Q ss_pred ceEEecCCCcccCccccccccEEEEEeeccccccccc-CCCCcceeeEEeccCccccccC-ccccccccCCCeeeecCCC
Q 039519 376 NFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSE-LQPALTFFLFFNMSNNHLLWKL-PLGISTLVSLEHLDLSSTA 453 (647)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~L~L~~~~ 453 (647)
..+.+.+.+++.+|... ++++++|++++|.+..++. .+.++++|++|++++| .+..+ |..|+++++|++|++++|.
T Consensus 34 ~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp CEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSC
T ss_pred cEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCc
Confidence 56778888888888632 3799999999999999874 6799999999999999 55555 6779999999999999999
Q ss_pred CCccccchhcCccCcEEeecccccCCcCc--hhhhcCCCCCcEEecccc
Q 039519 454 ITHLPIDLQKLVNLKCLNLQYMYNLNQFP--RLVISAFSKLQVLRMFDC 500 (647)
Q Consensus 454 l~~lp~~~~~l~~L~~L~l~~~~~l~~lp--~~~i~~l~~L~~L~l~~~ 500 (647)
++.+|.. .+++|++|++++| .+..+| .. ++.+++|++|++.+.
T Consensus 112 l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~-~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 112 LQNISCC--PMASLRHLDLSFN-DFDVLPVCKE-FGNLTKLTFLGLSAA 156 (562)
T ss_dssp CCEECSC--CCTTCSEEECCSS-CCSBCCCCGG-GGGCTTCCEEEEECS
T ss_pred CCccCcc--ccccCCEEECCCC-CccccCchHh-hcccCcccEEecCCC
Confidence 9999987 8999999999999 677765 44 899999999988763
No 57
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=2.2e-17 Score=178.67 Aligned_cols=226 Identities=15% Similarity=0.116 Sum_probs=133.1
Q ss_pred eEEecCCCcccCc--cccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCC
Q 039519 377 FLVHAGFGLTEAP--EIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAI 454 (647)
Q Consensus 377 ~l~~~~~~~~~~~--~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l 454 (647)
.+...+..+..++ .+..+++|+.|+|++|.+...++ +..+++|++|++++| .+..+|. .++|++|++++|.+
T Consensus 38 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~L~~N~l 111 (487)
T 3oja_A 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETLHAANNNI 111 (487)
T ss_dssp EEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEECCSSCC
T ss_pred EEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCEEECcCCcC
Confidence 3444444444433 45566666666666666665444 566666666666666 4544442 26666777777666
Q ss_pred CccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhh-CCCCCcEE
Q 039519 455 THLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELI-GMKYLMAV 533 (647)
Q Consensus 455 ~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L 533 (647)
+.+|.. .+++|++|++++| .+..+++..++.+++|++|++.+ |.+ .+..+..+. .+++|+.|
T Consensus 112 ~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~---N~l-----------~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 112 SRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKL---NEI-----------DTVNFAELAASSDTLEHL 174 (487)
T ss_dssp CCEEEC--CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTT---SCC-----------CEEEGGGGGGGTTTCCEE
T ss_pred CCCCcc--ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCC---CCC-----------CCcChHHHhhhCCcccEE
Confidence 665532 4567777777776 45555443366667777775554 333 222333343 56777777
Q ss_pred EEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChhhccccCCceEEeeccc
Q 039519 534 TITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQMIIQRSSLSVHNLFINK 613 (647)
Q Consensus 534 ~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~ 613 (647)
+++.|.++.+.. ...+++|+.|+|++ +++..++. .+..+++|+.|+|++|.+.+.+++++.+++|+.|++++|+
T Consensus 175 ~Ls~N~l~~~~~----~~~l~~L~~L~Ls~-N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 175 NLQYNFIYDVKG----QVVFAKLKTLDLSS-NKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp ECTTSCCCEEEC----CCCCTTCCEEECCS-SCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred ecCCCccccccc----cccCCCCCEEECCC-CCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 777776655411 11245677777776 45665542 3677788888888887666555567777888888888753
Q ss_pred cccc-ccchhhhhhhcCCCCc
Q 039519 614 NYIH-TNQLSILLGINRLPHF 633 (647)
Q Consensus 614 ~~~~-~~~~~~l~~l~~L~~L 633 (647)
+. ......+..++.|..|
T Consensus 249 --l~c~~~~~~~~~l~~L~~l 267 (487)
T 3oja_A 249 --FHCGTLRDFFSKNQRVQTV 267 (487)
T ss_dssp --BCHHHHHHHHTTCHHHHHH
T ss_pred --CcCcchHHHHHhCCCCcEE
Confidence 33 2222334445544443
No 58
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.68 E-value=5.9e-17 Score=181.01 Aligned_cols=240 Identities=19% Similarity=0.171 Sum_probs=139.3
Q ss_pred EEecCCCcccCccccccccEEEEEeeccccccccc--------------------CCCCcceeeEEeccCccccccC---
Q 039519 378 LVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSE--------------------LQPALTFFLFFNMSNNHLLWKL--- 434 (647)
Q Consensus 378 l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~--------------------~~~~l~~L~~L~l~~~~~~~~l--- 434 (647)
+...+..+..+|.+..+++++.|++.+|.+..+|. .+..+++|++|++++| .+...
T Consensus 290 L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~~~~~ 368 (606)
T 3vq2_A 290 MSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN-ALSFSGCC 368 (606)
T ss_dssp EEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSS-CEEEEEEC
T ss_pred EEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCC-ccCCCcch
Confidence 33344444444445555555555555555544442 1234455555555555 33322
Q ss_pred ccccccccCCCeeeecCCCCCccccchhcCccCcEEeecccccCCcCch-hhhcCCCCCcEEeccccCCCcccccccccc
Q 039519 435 PLGISTLVSLEHLDLSSTAITHLPIDLQKLVNLKCLNLQYMYNLNQFPR-LVISAFSKLQVLRMFDCGGSKIERLKSNVL 513 (647)
Q Consensus 435 p~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~ 513 (647)
|..+..+++|++|++++|.++.+|..+..+++|++|++++| .+..++. ..+..+++|++|++.++. +
T Consensus 369 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~---l-------- 436 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTN---T-------- 436 (606)
T ss_dssp CHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSC---C--------
T ss_pred hhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCC---C--------
Confidence 44555666666666666666666655666666666666665 3333322 225556666666554432 2
Q ss_pred cCCccccHHHhhCCCCCcEEEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCC
Q 039519 514 FGGHQVLVEELIGMKYLMAVTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLE 593 (647)
Q Consensus 514 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~ 593 (647)
....+..++.+++|+.|+++.|.+... .++.....+++|+.|++++ +++..+....+..+++|++|+|++|...+
T Consensus 437 ---~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 511 (606)
T 3vq2_A 437 ---KIDFDGIFLGLTSLNTLKMAGNSFKDN-TLSNVFANTTNLTFLDLSK-CQLEQISWGVFDTLHRLQLLNMSHNNLLF 511 (606)
T ss_dssp ---EECCTTTTTTCTTCCEEECTTCEEGGG-EECSCCTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ---CccchhhhcCCCCCCEEECCCCcCCCc-chHHhhccCCCCCEEECCC-CcCCccChhhhcccccCCEEECCCCcCCC
Confidence 333444567778888888876665431 0122223445677777776 35665554457888899999999887766
Q ss_pred CCh-hhccccCCceEEeecccccccccchhhhhhhc-CCCCcccCCC
Q 039519 594 DFQ-MIIQRSSLSVHNLFINKNYIHTNQLSILLGIN-RLPHFTKSNP 638 (647)
Q Consensus 594 ~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~-~L~~L~~~~~ 638 (647)
.+| .++.+++|+.|+|++|. +...+. .+..++ +|+.|+..++
T Consensus 512 ~~~~~~~~l~~L~~L~l~~N~--l~~~p~-~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 512 LDSSHYNQLYSLSTLDCSFNR--IETSKG-ILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp EEGGGTTTCTTCCEEECTTSC--CCCEES-CGGGSCTTCCEEECCSC
T ss_pred cCHHHccCCCcCCEEECCCCc--CcccCH-hHhhhcccCcEEEccCC
Confidence 655 48888899999998853 442222 267776 5887766554
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.67 E-value=3e-17 Score=167.64 Aligned_cols=228 Identities=15% Similarity=0.118 Sum_probs=147.3
Q ss_pred ceEEecCCCcccCc--cccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCC
Q 039519 376 NFLVHAGFGLTEAP--EIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTA 453 (647)
Q Consensus 376 ~~l~~~~~~~~~~~--~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~ 453 (647)
+.+...+..+...+ .+..+++|+.|++++|.+..++. +..+++|++|++++| .+..+| ..++|++|++++|.
T Consensus 37 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~----~~~~L~~L~l~~n~ 110 (317)
T 3o53_A 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL----VGPSIETLHAANNN 110 (317)
T ss_dssp SEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEE----ECTTCCEEECCSSC
T ss_pred CEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-cccccc----CCCCcCEEECCCCc
Confidence 34444555555543 46667777777777777776554 567777777777777 555444 33677777777777
Q ss_pred CCccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHh-hCCCCCcE
Q 039519 454 ITHLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEEL-IGMKYLMA 532 (647)
Q Consensus 454 l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~ 532 (647)
++.+|.. .+++|++|++++| .+..+++..++.+++|++|++.+ |.+.. ..+..+ ..+++|+.
T Consensus 111 l~~~~~~--~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~---N~l~~-----------~~~~~~~~~l~~L~~ 173 (317)
T 3o53_A 111 ISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKL---NEIDT-----------VNFAELAASSDTLEH 173 (317)
T ss_dssp CSEEEEC--CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTT---SCCCE-----------EEGGGGGGGTTTCCE
T ss_pred cCCcCcc--ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCC---CCCCc-----------ccHHHHhhccCcCCE
Confidence 7766543 3677888888887 66666654466777777776654 44422 222333 35778888
Q ss_pred EEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChhhccccCCceEEeecc
Q 039519 533 VTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQMIIQRSSLSVHNLFIN 612 (647)
Q Consensus 533 L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~ 612 (647)
|+++.|.++.+.. ...+.+|+.|++++ +++..+.. .+..+++|++|+|++|.....++.+..+++|+.|+|++|
T Consensus 174 L~L~~N~l~~~~~----~~~l~~L~~L~Ls~-N~l~~l~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 174 LNLQYNFIYDVKG----QVVFAKLKTLDLSS-NKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp EECTTSCCCEEEC----CCCCTTCCEEECCS-SCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred EECCCCcCccccc----ccccccCCEEECCC-CcCCcchh-hhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCC
Confidence 8888777665421 11255677777776 56666542 377788888888888866654445788888888888885
Q ss_pred ccccc-ccchhhhhhhcCCCCcc
Q 039519 613 KNYIH-TNQLSILLGINRLPHFT 634 (647)
Q Consensus 613 ~~~~~-~~~~~~l~~l~~L~~L~ 634 (647)
+ +. ......+..++.|+.|.
T Consensus 248 ~--~~~~~~~~~~~~~~~L~~l~ 268 (317)
T 3o53_A 248 G--FHCGTLRDFFSKNQRVQTVA 268 (317)
T ss_dssp C--CBHHHHHHHHHTCHHHHHHH
T ss_pred C--ccCcCHHHHHhccccceEEE
Confidence 4 33 23334455555555543
No 60
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.67 E-value=1.8e-16 Score=163.11 Aligned_cols=251 Identities=17% Similarity=0.192 Sum_probs=175.1
Q ss_pred cceEEecCCCcccCc--cccccccEEEEEeeccccccc-ccCCCCcceeeEEeccCccccccCccccccccCCCeeeecC
Q 039519 375 ENFLVHAGFGLTEAP--EIQNWRNVRRMSLMKNKIENL-SELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSS 451 (647)
Q Consensus 375 ~~~l~~~~~~~~~~~--~~~~~~~l~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~ 451 (647)
-+.+...+..+..++ .+..+++|++|++++|.+..+ |..+.++++|++|++++| .+..+|..+. ++|++|++++
T Consensus 56 l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l~~ 132 (332)
T 2ft3_A 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELRIHD 132 (332)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEECCS
T ss_pred CeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEECCC
Confidence 344555555665553 477888999999999999886 556788899999999999 7778887765 7899999999
Q ss_pred CCCCcccc-chhcCccCcEEeecccccCCc--CchhhhcCCCCCcEEeccccCCCccccccccccc----------CCcc
Q 039519 452 TAITHLPI-DLQKLVNLKCLNLQYMYNLNQ--FPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLF----------GGHQ 518 (647)
Q Consensus 452 ~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~----------~~~~ 518 (647)
|.++.+|. .++.+++|++|++++| .+.. ++...+..+ +|+.|++. .|.+..+|..... ....
T Consensus 133 n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~---~n~l~~l~~~~~~~L~~L~l~~n~i~~ 207 (332)
T 2ft3_A 133 NRIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRIS---EAKLTGIPKDLPETLNELHLDHNKIQA 207 (332)
T ss_dssp SCCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCC---SSBCSSCCSSSCSSCSCCBCCSSCCCC
T ss_pred CccCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECc---CCCCCccCccccCCCCEEECCCCcCCc
Confidence 99998875 4788999999999988 4432 222225555 66666554 3555555543210 0122
Q ss_pred ccHHHhhCCCCCcEEEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChh-
Q 039519 519 VLVEELIGMKYLMAVTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQM- 597 (647)
Q Consensus 519 ~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~- 597 (647)
..+..+..+++|+.|+++.|.++.+.. .....+.+|+.|++++ +++..++ ..+..+++|++|+|++|.....++.
T Consensus 208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~-N~l~~lp-~~l~~l~~L~~L~l~~N~l~~~~~~~ 283 (332)
T 2ft3_A 208 IELEDLLRYSKLYRLGLGHNQIRMIEN--GSLSFLPTLRELHLDN-NKLSRVP-AGLPDLKLLQVVYLHTNNITKVGVND 283 (332)
T ss_dssp CCTTSSTTCTTCSCCBCCSSCCCCCCT--TGGGGCTTCCEEECCS-SCCCBCC-TTGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred cCHHHhcCCCCCCEEECCCCcCCcCCh--hHhhCCCCCCEEECCC-CcCeecC-hhhhcCccCCEEECCCCCCCccChhH
Confidence 233557788999999999887765421 1233456788888887 5677554 3378899999999999976655543
Q ss_pred hcc------ccCCceEEeecccccccccchhhhhhhcCCCCcccCC
Q 039519 598 IIQ------RSSLSVHNLFINKNYIHTNQLSILLGINRLPHFTKSN 637 (647)
Q Consensus 598 ~~~------l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~~~~ 637 (647)
+.. .++|+.|++++|+..........+..+++|+.++..+
T Consensus 284 ~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp SSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC--
T ss_pred ccccccccccccccceEeecCcccccccCcccccccchhhhhhccc
Confidence 433 4779999999976433344455678888888886654
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=9.3e-17 Score=173.78 Aligned_cols=215 Identities=16% Similarity=0.125 Sum_probs=167.5
Q ss_pred ccccEEEEEeecccccccc-cCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccchhcCccCcEEe
Q 039519 393 NWRNVRRMSLMKNKIENLS-ELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLVNLKCLN 471 (647)
Q Consensus 393 ~~~~l~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~ 471 (647)
.+++|+.|++++|.+..++ ..+.++++|++|++++| .+...++ ++.+++|++|+|++|.++.+|. .++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 4458999999999999875 46689999999999999 5655554 9999999999999999998874 38999999
Q ss_pred ecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhhHHHHhhhh-
Q 039519 472 LQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQALQELLISQ- 550 (647)
Q Consensus 472 l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~- 550 (647)
+++| .+..+|. ..+++|+.|++.+ |.+ .+..+..++.+++|+.|+++.|.++... +...
T Consensus 106 L~~N-~l~~~~~---~~l~~L~~L~L~~---N~l-----------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~ 165 (487)
T 3oja_A 106 AANN-NISRVSC---SRGQGKKNIYLAN---NKI-----------TMLRDLDEGCRSRVQYLDLKLNEIDTVN--FAELA 165 (487)
T ss_dssp CCSS-CCCCEEE---CCCSSCEEEECCS---SCC-----------CSGGGBCGGGGSSEEEEECTTSCCCEEE--GGGGG
T ss_pred CcCC-cCCCCCc---cccCCCCEEECCC---CCC-----------CCCCchhhcCCCCCCEEECCCCCCCCcC--hHHHh
Confidence 9998 6777775 3578899997765 444 2333334677899999999988876532 1111
Q ss_pred hhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChhhccccCCceEEeecccccccccchhhhhhhcCC
Q 039519 551 ELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQMIIQRSSLSVHNLFINKNYIHTNQLSILLGINRL 630 (647)
Q Consensus 551 ~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L 630 (647)
..+++|+.|+|++ +.+..+. ....+++|++|+|++|.+.+.+|.+..+++|+.|+|++|. +.. .+..++.+++|
T Consensus 166 ~~l~~L~~L~Ls~-N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~--l~~-lp~~l~~l~~L 239 (487)
T 3oja_A 166 ASSDTLEHLNLQY-NFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK--LVL-IEKALRFSQNL 239 (487)
T ss_dssp GGTTTCCEEECTT-SCCCEEE--CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC--CCE-ECTTCCCCTTC
T ss_pred hhCCcccEEecCC-Ccccccc--ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc--Ccc-cchhhccCCCC
Confidence 2456899999988 5677664 3556999999999999888777789999999999999963 443 23347778888
Q ss_pred CCcccCCCC
Q 039519 631 PHFTKSNPY 639 (647)
Q Consensus 631 ~~L~~~~~~ 639 (647)
+.|+..++.
T Consensus 240 ~~L~l~~N~ 248 (487)
T 3oja_A 240 EHFDLRGNG 248 (487)
T ss_dssp CEEECTTCC
T ss_pred CEEEcCCCC
Confidence 888776654
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=1.9e-16 Score=158.33 Aligned_cols=217 Identities=18% Similarity=0.097 Sum_probs=162.4
Q ss_pred EEeecccccccccCCCCcceeeEEeccCccccccCcc-ccccccCCCeeeecCCCCCcccc-chhcCccCcEEeeccccc
Q 039519 400 MSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPL-GISTLVSLEHLDLSSTAITHLPI-DLQKLVNLKCLNLQYMYN 477 (647)
Q Consensus 400 L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~ 477 (647)
++-.+..+..+|..++ +.|++|++++| .+..+|. .+.++++|++|++++|.++.+|. .++++++|++|++++| .
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~ 87 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-P 87 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-C
T ss_pred EEecCCCccccCCCCC--CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-c
Confidence 3444556677776544 46899999999 6666655 78999999999999999998774 7899999999999998 6
Q ss_pred CCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhhHHHHhhhhhhhhccc
Q 039519 478 LNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQALQELLISQELQRCTQ 557 (647)
Q Consensus 478 l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~ 557 (647)
+..++...+..+++|++|++.++ .+..++ ...++.+++|+.|+++.|.++.+. ++.....+++|+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n---~l~~~~-----------~~~~~~l~~L~~L~l~~n~l~~~~-l~~~~~~l~~L~ 152 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVET---NLASLE-----------NFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLE 152 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTS---CCCCST-----------TCCCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCC
T ss_pred cCccChhhhcCCccccEEECCCC---CccccC-----------chhcccCCCCCEEECcCCccceec-CchhhccCCCCC
Confidence 77777655899999999987754 432222 223678899999999988776521 122334456788
Q ss_pred eeeeeccCCCceEEEecccccCCcc----EEEEcCCCCCCCChhhccccCCceEEeecccccccccchhhhhhhcCCCCc
Q 039519 558 FLFLRCFNDSKSLDIFCLACLHNLN----KLYVAGCKHLEDFQMIIQRSSLSVHNLFINKNYIHTNQLSILLGINRLPHF 633 (647)
Q Consensus 558 ~l~L~~~~~L~~L~l~~~~~l~~L~----~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L 633 (647)
.|++++ +++..+....+..+.+|+ +|++++|.....++......+|+.|+|++| .+...+...+..+++|+.|
T Consensus 153 ~L~Ls~-N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L 229 (276)
T 2z62_A 153 HLDLSS-NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN--QLKSVPDGIFDRLTSLQKI 229 (276)
T ss_dssp EEECCS-SCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSS--CCSCCCTTTTTTCCSCCEE
T ss_pred EEECCC-CCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCC--ceeecCHhHhcccccccEE
Confidence 888887 567776655566677777 899999977666665545568999999995 4555555667889999988
Q ss_pred ccCCC
Q 039519 634 TKSNP 638 (647)
Q Consensus 634 ~~~~~ 638 (647)
+..++
T Consensus 230 ~l~~N 234 (276)
T 2z62_A 230 WLHTN 234 (276)
T ss_dssp ECCSS
T ss_pred EccCC
Confidence 77654
No 63
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.65 E-value=3e-16 Score=173.83 Aligned_cols=60 Identities=12% Similarity=0.083 Sum_probs=28.7
Q ss_pred cccCCccEEEEcCCCCCCCCh--hhccccCCceEEeecccccccccchhhhhhhcCCCCcccCC
Q 039519 576 ACLHNLNKLYVAGCKHLEDFQ--MIIQRSSLSVHNLFINKNYIHTNQLSILLGINRLPHFTKSN 637 (647)
Q Consensus 576 ~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~~~~ 637 (647)
..+++|++|++++|.....+| .+..+++|++|++++| .+.......+.++++|+.|+..+
T Consensus 393 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~ 454 (570)
T 2z63_A 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT--HTRVAFNGIFNGLSSLEVLKMAG 454 (570)
T ss_dssp ETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS--CCEECCTTTTTTCTTCCEEECTT
T ss_pred cccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC--cccccchhhhhcCCcCcEEECcC
Confidence 344455555555544433333 2455555555555553 23333333455555666555444
No 64
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.65 E-value=3.6e-16 Score=181.07 Aligned_cols=125 Identities=12% Similarity=0.127 Sum_probs=91.6
Q ss_pred cceEEecCCCcccC--ccccccccEEEEEeeccc-cccc-ccCCCCcceeeEEeccCccccccCccccccccCCCeeeec
Q 039519 375 ENFLVHAGFGLTEA--PEIQNWRNVRRMSLMKNK-IENL-SELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLS 450 (647)
Q Consensus 375 ~~~l~~~~~~~~~~--~~~~~~~~l~~L~l~~n~-i~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~ 450 (647)
-+.+...+..++.+ ..+..+++|++|++++|. +..+ |..+.++++|++|++++|......|..|+++++|++|+|+
T Consensus 26 l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 105 (844)
T 3j0a_A 26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY 105 (844)
T ss_dssp CCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECT
T ss_pred cCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCc
Confidence 34455555555543 467788899999999884 4455 5566888899999999884444447788899999999999
Q ss_pred CCCCCc-cccc--hhcCccCcEEeecccccCCcCc-hhhhcCCCCCcEEecccc
Q 039519 451 STAITH-LPID--LQKLVNLKCLNLQYMYNLNQFP-RLVISAFSKLQVLRMFDC 500 (647)
Q Consensus 451 ~~~l~~-lp~~--~~~l~~L~~L~l~~~~~l~~lp-~~~i~~l~~L~~L~l~~~ 500 (647)
+|.++. +|.. ++++++|++|++++| .+..++ ...++++++|++|++.++
T Consensus 106 ~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 106 FCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp TCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred CCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCC
Confidence 998874 5554 888999999999988 455543 223788889998877753
No 65
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.65 E-value=1.6e-15 Score=170.13 Aligned_cols=63 Identities=22% Similarity=0.101 Sum_probs=43.4
Q ss_pred ccccCCccEEEEcCCCCCCCCh-hhccccCCceEEeecccccccccchhhhhhhcCCCCcccCCCC
Q 039519 575 LACLHNLNKLYVAGCKHLEDFQ-MIIQRSSLSVHNLFINKNYIHTNQLSILLGINRLPHFTKSNPY 639 (647)
Q Consensus 575 ~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~ 639 (647)
+..+++|++|+|++|...+.+| .|+.+++|++|+|++| .+...+...+.++++|+.|+.+++.
T Consensus 490 ~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N--~l~~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 490 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN--NFFSLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS--CCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred hhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC--cCCCCChhHHhCCCCCCEEECCCCc
Confidence 4556777888888776665555 3778888888888874 3555555567777888877666554
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.64 E-value=1.1e-16 Score=163.47 Aligned_cols=218 Identities=17% Similarity=0.120 Sum_probs=166.3
Q ss_pred cccccEEEEEeecccccccc-cCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccchhcCccCcEE
Q 039519 392 QNWRNVRRMSLMKNKIENLS-ELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLVNLKCL 470 (647)
Q Consensus 392 ~~~~~l~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~L~~L 470 (647)
..++++++|++++|.+..++ ..+.++++|++|++++| .+...++ +..+++|++|++++|.++.+|. +++|++|
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L 104 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEE
Confidence 34568999999999999876 45688999999999999 6665654 8999999999999999988773 4899999
Q ss_pred eecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhhHHHHhhhh
Q 039519 471 NLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQALQELLISQ 550 (647)
Q Consensus 471 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~ 550 (647)
++++| .+..++. ..+++|++|++.+ |.+..++ ...++.+++|+.|+++.|.++.+.. ....
T Consensus 105 ~l~~n-~l~~~~~---~~~~~L~~L~l~~---N~l~~~~-----------~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~ 165 (317)
T 3o53_A 105 HAANN-NISRVSC---SRGQGKKNIYLAN---NKITMLR-----------DLDEGCRSRVQYLDLKLNEIDTVNF-AELA 165 (317)
T ss_dssp ECCSS-CCSEEEE---CCCSSCEEEECCS---SCCCSGG-----------GBCTGGGSSEEEEECTTSCCCEEEG-GGGG
T ss_pred ECCCC-ccCCcCc---cccCCCCEEECCC---CCCCCcc-----------chhhhccCCCCEEECCCCCCCcccH-HHHh
Confidence 99998 6777775 3478899997765 4543332 2336678999999999887765321 1111
Q ss_pred hhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChhhccccCCceEEeecccccccccchhhhhhhcCC
Q 039519 551 ELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQMIIQRSSLSVHNLFINKNYIHTNQLSILLGINRL 630 (647)
Q Consensus 551 ~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L 630 (647)
..+.+|+.|++++ +.+..+. ....+++|++|+|++|.....++.+..+++|+.|+|++|. +... ...+..+++|
T Consensus 166 ~~l~~L~~L~L~~-N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~--l~~l-~~~~~~l~~L 239 (317)
T 3o53_A 166 ASSDTLEHLNLQY-NFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK--LVLI-EKALRFSQNL 239 (317)
T ss_dssp GGTTTCCEEECTT-SCCCEEE--CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC--CCEE-CTTCCCCTTC
T ss_pred hccCcCCEEECCC-CcCcccc--cccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc--ccch-hhHhhcCCCC
Confidence 2346789999988 5677764 3456999999999999877766779999999999999963 4422 3357788899
Q ss_pred CCcccCCCCc
Q 039519 631 PHFTKSNPYH 640 (647)
Q Consensus 631 ~~L~~~~~~~ 640 (647)
+.|+..+..+
T Consensus 240 ~~L~l~~N~~ 249 (317)
T 3o53_A 240 EHFDLRGNGF 249 (317)
T ss_dssp CEEECTTCCC
T ss_pred CEEEccCCCc
Confidence 9888776543
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.64 E-value=4e-16 Score=172.58 Aligned_cols=95 Identities=23% Similarity=0.224 Sum_probs=50.2
Q ss_pred ceEEecCCCcccCccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCC
Q 039519 376 NFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAIT 455 (647)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~ 455 (647)
..+...+..++.+|. .+++|+.|++++|.++.+|. .+++|++|++++| .+..+|. .+++|++|++++|.++
T Consensus 64 ~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~N~l~ 134 (622)
T 3g06_A 64 TTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIFGNQLT 134 (622)
T ss_dssp SEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECCSSCCS
T ss_pred cEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECCCCCCC
Confidence 344444445555544 34555555555555555544 3445555555555 4445543 3455555555555555
Q ss_pred ccccchhcCccCcEEeecccccCCcCch
Q 039519 456 HLPIDLQKLVNLKCLNLQYMYNLNQFPR 483 (647)
Q Consensus 456 ~lp~~~~~l~~L~~L~l~~~~~l~~lp~ 483 (647)
.+|.. +++|++|++++| .+..+|.
T Consensus 135 ~lp~~---l~~L~~L~Ls~N-~l~~l~~ 158 (622)
T 3g06_A 135 SLPVL---PPGLQELSVSDN-QLASLPA 158 (622)
T ss_dssp CCCCC---CTTCCEEECCSS-CCSCCCC
T ss_pred cCCCC---CCCCCEEECcCC-cCCCcCC
Confidence 55542 255666666665 4455543
No 68
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.64 E-value=4.4e-16 Score=166.99 Aligned_cols=210 Identities=18% Similarity=0.151 Sum_probs=165.3
Q ss_pred cCccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccchhcCcc
Q 039519 387 EAPEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLVN 466 (647)
Q Consensus 387 ~~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~ 466 (647)
....+..++++++|++++|.+.++| .+..+++|++|++++| .+..+| ++.+++|++|++++|.++.+| ++++++
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~ 107 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTK 107 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTT
T ss_pred cccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCCCceee--cCCCCc
Confidence 3345677889999999999999987 5688899999999999 677776 899999999999999999986 899999
Q ss_pred CcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecc-hhhHHH
Q 039519 467 LKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKR-LQALQE 545 (647)
Q Consensus 467 L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~l~~ 545 (647)
|++|++++| .+..+| ++.+++|++|++.+ |.+..+ .++.+++|+.|+++.|. +..+
T Consensus 108 L~~L~L~~N-~l~~l~---~~~l~~L~~L~l~~---N~l~~l--------------~l~~l~~L~~L~l~~n~~~~~~-- 164 (457)
T 3bz5_A 108 LTYLNCDTN-KLTKLD---VSQNPLLTYLNCAR---NTLTEI--------------DVSHNTQLTELDCHLNKKITKL-- 164 (457)
T ss_dssp CCEEECCSS-CCSCCC---CTTCTTCCEEECTT---SCCSCC--------------CCTTCTTCCEEECTTCSCCCCC--
T ss_pred CCEEECCCC-cCCeec---CCCCCcCCEEECCC---Ccccee--------------ccccCCcCCEEECCCCCccccc--
Confidence 999999999 777776 68899999997775 444221 26788999999998763 2222
Q ss_pred HhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChhhccccCCceEEeecccccccccchhhhh
Q 039519 546 LLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQMIIQRSSLSVHNLFINKNYIHTNQLSILL 625 (647)
Q Consensus 546 l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~ 625 (647)
....+++|+.|++++ +++..++ +..+++|+.|++++|...+. .++.+++|++|++++|. +.. ++ ++
T Consensus 165 ---~~~~l~~L~~L~ls~-n~l~~l~---l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~--l~~--ip-~~ 230 (457)
T 3bz5_A 165 ---DVTPQTQLTTLDCSF-NKITELD---VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNK--LTE--ID-VT 230 (457)
T ss_dssp ---CCTTCTTCCEEECCS-SCCCCCC---CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSC--CSC--CC-CT
T ss_pred ---ccccCCcCCEEECCC-Cccceec---cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCc--ccc--cC-cc
Confidence 123345788888877 4677765 67899999999999976554 38899999999999963 443 23 66
Q ss_pred hhcCCCCcccCCCC
Q 039519 626 GINRLPHFTKSNPY 639 (647)
Q Consensus 626 ~l~~L~~L~~~~~~ 639 (647)
.+++|+.|+..+..
T Consensus 231 ~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 231 PLTQLTYFDCSVNP 244 (457)
T ss_dssp TCTTCSEEECCSSC
T ss_pred ccCCCCEEEeeCCc
Confidence 77888877665443
No 69
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.64 E-value=1.4e-15 Score=167.72 Aligned_cols=120 Identities=23% Similarity=0.225 Sum_probs=98.5
Q ss_pred EEecCCCcccCccccccccEEEEEeecccccccc-cCCCCcceeeEEeccCccccccC-ccccccccCCCeeeecCCCCC
Q 039519 378 LVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLS-ELQPALTFFLFFNMSNNHLLWKL-PLGISTLVSLEHLDLSSTAIT 455 (647)
Q Consensus 378 l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~L~L~~~~l~ 455 (647)
+...+.+++.+|... .+++++|++++|.+..++ ..+.++++|++|++++| .+..+ |..++.+++|++|++++|.++
T Consensus 10 c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 10 CDGRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp EECTTSCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred EECCCCccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCccC
Confidence 344556777777632 479999999999999875 56799999999999999 55554 467999999999999999999
Q ss_pred ccccc-hhcCccCcEEeecccccCCc--CchhhhcCCCCCcEEeccccC
Q 039519 456 HLPID-LQKLVNLKCLNLQYMYNLNQ--FPRLVISAFSKLQVLRMFDCG 501 (647)
Q Consensus 456 ~lp~~-~~~l~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~ 501 (647)
.+|.. ++++++|++|++++| .+.. +|.. ++.+++|++|++.++.
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSL-FPNLTNLQTLRIGNVE 134 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTC-CCSSSCSSCS-CTTCTTCCEEEEEESS
T ss_pred ccCHHHhccCCCCcEEECCCC-cccccchhhh-hhccCCccEEECCCCc
Confidence 88765 999999999999999 5664 3554 8899999999888753
No 70
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=9.3e-16 Score=152.93 Aligned_cols=105 Identities=21% Similarity=0.311 Sum_probs=59.6
Q ss_pred ccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccc-hhcCccCcE
Q 039519 391 IQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPID-LQKLVNLKC 469 (647)
Q Consensus 391 ~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~-~~~l~~L~~ 469 (647)
...+++++.|++.+|.+..++. +..+++|++|++++| .+..++ .++.+++|++|++++|.++.+|.. ++++++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCcccccc-cccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 3445556666666666555442 345556666666666 444443 556666666666666666655433 456666666
Q ss_pred EeecccccCCcCchhhhcCCCCCcEEeccc
Q 039519 470 LNLQYMYNLNQFPRLVISAFSKLQVLRMFD 499 (647)
Q Consensus 470 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 499 (647)
|++++| .+..+|...++.+++|++|++.+
T Consensus 114 L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 142 (272)
T 3rfs_A 114 LVLVEN-QLQSLPDGVFDKLTNLTYLNLAH 142 (272)
T ss_dssp EECTTS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred EECCCC-cCCccCHHHhccCCCCCEEECCC
Confidence 666665 45555554455566666665543
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.63 E-value=5.9e-16 Score=171.21 Aligned_cols=107 Identities=26% Similarity=0.270 Sum_probs=62.0
Q ss_pred eEEecCCCcccCccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCc
Q 039519 377 FLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITH 456 (647)
Q Consensus 377 ~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~ 456 (647)
.+...+..++.+|.... ++++.|++++|.++.+|. .+++|++|++++| .+..+|. .+++|++|++++|.++.
T Consensus 44 ~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~l~~ 115 (622)
T 3g06_A 44 VLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSNPLTH 115 (622)
T ss_dssp EEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSCCCCC
T ss_pred EEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCCcCCC
Confidence 44455555555554222 566666666666666554 3455666666666 4555654 45666666666666666
Q ss_pred cccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccc
Q 039519 457 LPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFD 499 (647)
Q Consensus 457 lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 499 (647)
+|. .+++|+.|++++| .+..+|.. +++|++|++.+
T Consensus 116 l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~ 150 (622)
T 3g06_A 116 LPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSD 150 (622)
T ss_dssp CCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCS
T ss_pred CCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcC
Confidence 665 4556666666666 45556542 35566665543
No 72
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.62 E-value=8.3e-16 Score=174.14 Aligned_cols=122 Identities=21% Similarity=0.216 Sum_probs=68.7
Q ss_pred ceEEecCCCcccCc--cccccccEEEEEeeccccccccc-CCCCcceeeEEeccCccccccCcc-ccccccCCCeeeecC
Q 039519 376 NFLVHAGFGLTEAP--EIQNWRNVRRMSLMKNKIENLSE-LQPALTFFLFFNMSNNHLLWKLPL-GISTLVSLEHLDLSS 451 (647)
Q Consensus 376 ~~l~~~~~~~~~~~--~~~~~~~l~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~L~~ 451 (647)
+.+...+..++.++ .+..+++|++|++++|.+..+++ .+.++++|++|++++| .+..+|. .|+++++|++|++++
T Consensus 28 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~ 106 (680)
T 1ziw_A 28 TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMS 106 (680)
T ss_dssp SEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCS
T ss_pred cEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCC
Confidence 34444444444443 25556666666666666665432 2355566666666666 4555554 366666666666666
Q ss_pred CCCCccc-cchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccc
Q 039519 452 TAITHLP-IDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFD 499 (647)
Q Consensus 452 ~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 499 (647)
|.++.+| ..++++++|++|++++| .+..++.+.++.+++|++|++.+
T Consensus 107 n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~ 154 (680)
T 1ziw_A 107 NSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSN 154 (680)
T ss_dssp SCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCS
T ss_pred CccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccC
Confidence 6666554 34666666666666666 33443333355566666665543
No 73
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=1.1e-15 Score=153.84 Aligned_cols=172 Identities=19% Similarity=0.258 Sum_probs=122.0
Q ss_pred CccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccchhcCccC
Q 039519 388 APEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLVNL 467 (647)
Q Consensus 388 ~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~L 467 (647)
......+++++.|++++|.+..++. +..+++|++|++++| .+..++. ++.+++|++|++++|.++.+|. ++.+++|
T Consensus 39 ~~~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L 114 (291)
T 1h6t_A 39 AVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKL 114 (291)
T ss_dssp EECHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTC
T ss_pred ccchhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCC
Confidence 3344566788888888888887754 567788888888888 6667765 8888888888888888888764 8888888
Q ss_pred cEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhhHHHHh
Q 039519 468 KCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQALQELL 547 (647)
Q Consensus 468 ~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~ 547 (647)
++|++++| .+..++. +..+++|+.|++.++ .+.. . ..++.+++|+.|+++.|.++.+.
T Consensus 115 ~~L~L~~n-~i~~~~~--l~~l~~L~~L~l~~n---~l~~-----------~--~~l~~l~~L~~L~L~~N~l~~~~--- 172 (291)
T 1h6t_A 115 KSLSLEHN-GISDING--LVHLPQLESLYLGNN---KITD-----------I--TVLSRLTKLDTLSLEDNQISDIV--- 172 (291)
T ss_dssp CEEECTTS-CCCCCGG--GGGCTTCCEEECCSS---CCCC-----------C--GGGGGCTTCSEEECCSSCCCCCG---
T ss_pred CEEECCCC-cCCCChh--hcCCCCCCEEEccCC---cCCc-----------c--hhhccCCCCCEEEccCCccccch---
Confidence 88888888 6777764 778888888877653 3311 1 34667777777777755443321
Q ss_pred hhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChhhccccCCceEEeecc
Q 039519 548 ISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQMIIQRSSLSVHNLFIN 612 (647)
Q Consensus 548 ~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~ 612 (647)
.+..+++|++|+|++|.. ..++.+..+++|+.|++++|
T Consensus 173 --------------------------~l~~l~~L~~L~L~~N~i-~~l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 173 --------------------------PLAGLTKLQNLYLSKNHI-SDLRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp --------------------------GGTTCTTCCEEECCSSCC-CBCGGGTTCTTCSEEEEEEE
T ss_pred --------------------------hhcCCCccCEEECCCCcC-CCChhhccCCCCCEEECcCC
Confidence 034566777777777744 34555777777777777775
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=1.5e-15 Score=151.31 Aligned_cols=196 Identities=18% Similarity=0.186 Sum_probs=152.0
Q ss_pred cEEEEEeecccccccccCCCCcceeeEEeccCccccccCcc-ccccccCCCeeeecCCCCCccccc-hhcCccCcEEeec
Q 039519 396 NVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPL-GISTLVSLEHLDLSSTAITHLPID-LQKLVNLKCLNLQ 473 (647)
Q Consensus 396 ~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~ 473 (647)
+.+.++++++.++.+|..++ +.++.|++++| .+..+|. .+..+++|++|++++|.++.+|.. +.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 45679999999999887654 57899999999 6666664 689999999999999999999865 4789999999999
Q ss_pred ccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhhHHHHhhhhhhh
Q 039519 474 YMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQALQELLISQELQ 553 (647)
Q Consensus 474 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~ 553 (647)
+| .+..+|...+..+++|++|++.+ |.+..++ +..++.+++|+.|+++.|.++
T Consensus 94 ~n-~l~~~~~~~~~~l~~L~~L~l~~---n~l~~~~-----------~~~~~~l~~L~~L~Ls~n~l~------------ 146 (270)
T 2o6q_A 94 DN-KLQALPIGVFDQLVNLAELRLDR---NQLKSLP-----------PRVFDSLTKLTYLSLGYNELQ------------ 146 (270)
T ss_dssp SS-CCCCCCTTTTTTCSSCCEEECCS---SCCCCCC-----------TTTTTTCTTCCEEECCSSCCC------------
T ss_pred CC-cCCcCCHhHcccccCCCEEECCC---CccCeeC-----------HHHhCcCcCCCEEECCCCcCC------------
Confidence 98 78888877678899999997765 4443333 233567788888888744332
Q ss_pred hccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChh-hccccCCceEEeecccccccccchhhhhhhcCCCC
Q 039519 554 RCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQM-IIQRSSLSVHNLFINKNYIHTNQLSILLGINRLPH 632 (647)
Q Consensus 554 ~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~ 632 (647)
.+....+..+++|++|+|++|.....++. |..+++|++|+|++| .+...+...+..+++|+.
T Consensus 147 ---------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~ 209 (270)
T 2o6q_A 147 ---------------SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN--QLKRVPEGAFDSLEKLKM 209 (270)
T ss_dssp ---------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS--CCSCCCTTTTTTCTTCCE
T ss_pred ---------------ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC--cCCcCCHHHhccccCCCE
Confidence 22222367789999999999977666664 899999999999995 455555556788899998
Q ss_pred cccCCC
Q 039519 633 FTKSNP 638 (647)
Q Consensus 633 L~~~~~ 638 (647)
|...++
T Consensus 210 L~l~~N 215 (270)
T 2o6q_A 210 LQLQEN 215 (270)
T ss_dssp EECCSS
T ss_pred EEecCC
Confidence 876654
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.61 E-value=2.1e-15 Score=153.23 Aligned_cols=191 Identities=23% Similarity=0.253 Sum_probs=156.8
Q ss_pred cceEEecCCCcccCccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCC
Q 039519 375 ENFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAI 454 (647)
Q Consensus 375 ~~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l 454 (647)
-+.+...+..+..++.+..+++|++|++++|.+..++. +..+++|++|++++| .+..+| .+..+++|++|++++|.+
T Consensus 43 L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~n~l 119 (308)
T 1h6u_A 43 ITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLTSTQI 119 (308)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTTSCC
T ss_pred cCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECCCCCC
Confidence 44566677778888889999999999999999999887 789999999999999 677776 799999999999999999
Q ss_pred CccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEE
Q 039519 455 THLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVT 534 (647)
Q Consensus 455 ~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 534 (647)
+.+|. +..+++|++|++++| .+..++. ++.+++|+.|++.++ .+..+ . .+..+++|+.|+
T Consensus 120 ~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n---~l~~~-----------~--~l~~l~~L~~L~ 179 (308)
T 1h6u_A 120 TDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNA---QVSDL-----------T--PLANLSKLTTLK 179 (308)
T ss_dssp CCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSS---CCCCC-----------G--GGTTCTTCCEEE
T ss_pred CCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCC---cCCCC-----------h--hhcCCCCCCEEE
Confidence 99885 999999999999999 7788887 789999999988764 33111 1 178899999999
Q ss_pred EEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCC
Q 039519 535 ITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDF 595 (647)
Q Consensus 535 l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~ 595 (647)
++.|.++.+.. ...+++|+.|++++ +++..+. .+..+++|+.|+|++|+....+
T Consensus 180 l~~n~l~~~~~----l~~l~~L~~L~L~~-N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 180 ADDNKISDISP----LASLPNLIEVHLKN-NQISDVS--PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CCSSCCCCCGG----GGGCTTCCEEECTT-SCCCBCG--GGTTCTTCCEEEEEEEEEECCC
T ss_pred CCCCccCcChh----hcCCCCCCEEEccC-CccCccc--cccCCCCCCEEEccCCeeecCC
Confidence 99888876543 33455788888877 4565554 3788999999999999765433
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=4e-16 Score=158.95 Aligned_cols=202 Identities=14% Similarity=0.070 Sum_probs=151.5
Q ss_pred ccccEEEEEeecccccc-cccCC--CCcceeeEEeccCccccccCccccccc-----cCCCeeeecCCCCCccc-cchhc
Q 039519 393 NWRNVRRMSLMKNKIEN-LSELQ--PALTFFLFFNMSNNHLLWKLPLGISTL-----VSLEHLDLSSTAITHLP-IDLQK 463 (647)
Q Consensus 393 ~~~~l~~L~l~~n~i~~-l~~~~--~~l~~L~~L~l~~~~~~~~lp~~~~~L-----~~L~~L~L~~~~l~~lp-~~~~~ 463 (647)
.+++|++|++++|.+.+ +|..+ ..+++|++|++++| .+...|..++.+ ++|++|++++|.++.+| ..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 46899999999999985 77765 88899999999999 666678888887 89999999999999777 78999
Q ss_pred CccCcEEeecccccCCc--Cchhhh--cCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecc
Q 039519 464 LVNLKCLNLQYMYNLNQ--FPRLVI--SAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKR 539 (647)
Q Consensus 464 l~~L~~L~l~~~~~l~~--lp~~~i--~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 539 (647)
+++|++|++++|..... +|.. + +.+++|++|++.++ .+..++ ......+..+++|+.|+++.|.
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~-~~~~~l~~L~~L~L~~N---~l~~~~--------~~~~~~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISA-LCPLKFPTLQVLALRNA---GMETPS--------GVCSALAAARVQLQGLDLSHNS 239 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHH-SCTTSCTTCCEEECTTS---CCCCHH--------HHHHHHHHTTCCCSEEECTTSC
T ss_pred CCCCCEEECCCCCcCcchHHHHH-HHhccCCCCCEEECCCC---cCcchH--------HHHHHHHhcCCCCCEEECCCCc
Confidence 99999999999843332 2333 3 78899999977764 442111 1112234678999999999887
Q ss_pred hhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChhhccccCCceEEeeccc
Q 039519 540 LQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQMIIQRSSLSVHNLFINK 613 (647)
Q Consensus 540 ~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~ 613 (647)
++..... .....+.+|+.|++++ +++..++- .+. ++|++|+|++|...+. |.+..+++|++|+|++|+
T Consensus 240 l~~~~~~-~~~~~l~~L~~L~Ls~-N~l~~ip~-~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 240 LRDAAGA-PSCDWPSQLNSLNLSF-TGLKQVPK-GLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCSSCCC-SCCCCCTTCCEEECTT-SCCSSCCS-SCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCT
T ss_pred CCcccch-hhhhhcCCCCEEECCC-CccChhhh-hcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCC
Confidence 7653210 1112245788888887 56665542 122 8999999999976665 558999999999999953
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=1.4e-15 Score=151.53 Aligned_cols=202 Identities=20% Similarity=0.248 Sum_probs=148.7
Q ss_pred cceEEecCCCcccCccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccc-cccccCCCeeeecCCC
Q 039519 375 ENFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLG-ISTLVSLEHLDLSSTA 453 (647)
Q Consensus 375 ~~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~L~~L~~L~L~~~~ 453 (647)
-..+...+..+..++.+..+++|++|++++|.+..++ .+..+++|++|++++| .+..+|.. ++.+++|++|++++|.
T Consensus 43 L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 120 (272)
T 3rfs_A 43 IDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQ 120 (272)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred eeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCc
Confidence 3456667777888888999999999999999999875 5588899999999999 66666654 6899999999999999
Q ss_pred CCccccc-hhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcE
Q 039519 454 ITHLPID-LQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMA 532 (647)
Q Consensus 454 l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 532 (647)
++.+|.. ++.+++|++|++++| .+..+|...++.+++|+.|++.+ |.+..++ ...++.+++|+.
T Consensus 121 l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~---n~l~~~~-----------~~~~~~l~~L~~ 185 (272)
T 3rfs_A 121 LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSY---NQLQSLP-----------EGVFDKLTQLKD 185 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS---SCCCCCC-----------TTTTTTCTTCCE
T ss_pred CCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCC---CCcCccC-----------HHHhcCCccCCE
Confidence 9988755 789999999999999 78888887678899999997776 4443332 233567788888
Q ss_pred EEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChhhccccCCceEEeecc
Q 039519 533 VTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQMIIQRSSLSVHNLFIN 612 (647)
Q Consensus 533 L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~ 612 (647)
|+++.|.++.+ ....+..+++|++|+|++|+.. +.+++|++|+++.|
T Consensus 186 L~L~~N~l~~~---------------------------~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 186 LRLYQNQLKSV---------------------------PDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWIN 232 (272)
T ss_dssp EECCSSCCSCC---------------------------CTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHH
T ss_pred EECCCCcCCcc---------------------------CHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHH
Confidence 88875544321 1122456777888888877543 33456777777663
Q ss_pred cccccccchhhhhhhc
Q 039519 613 KNYIHTNQLSILLGIN 628 (647)
Q Consensus 613 ~~~~~~~~~~~l~~l~ 628 (647)
.+.+.....++.++
T Consensus 233 --~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 233 --KHSGVVRNSAGSVA 246 (272)
T ss_dssp --HTGGGBBCTTSCBC
T ss_pred --hCCCcccCcccccC
Confidence 34433333444443
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.60 E-value=1.2e-15 Score=156.97 Aligned_cols=203 Identities=17% Similarity=0.097 Sum_probs=153.5
Q ss_pred ccEEEEEeecccccccccCCCCcceeeEEeccCcccccc-CccccccccCCCeeeecCCCCC-ccccchhcCccCcEEee
Q 039519 395 RNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWK-LPLGISTLVSLEHLDLSSTAIT-HLPIDLQKLVNLKCLNL 472 (647)
Q Consensus 395 ~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~-lp~~~~~L~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l 472 (647)
++++.|++.+|.+...+.....+++|++|++++|..... +|..+..+++|++|++++|.++ ..|..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 688999999999988777677889999999999943323 7777889999999999999988 67888899999999999
Q ss_pred cccccCCc--CchhhhcCCCCCcEEecccc-CCCcccccccccccCCccccHHHhhCCC-CCcEEEEEecc--hhhHHHH
Q 039519 473 QYMYNLNQ--FPRLVISAFSKLQVLRMFDC-GGSKIERLKSNVLFGGHQVLVEELIGMK-YLMAVTITLKR--LQALQEL 546 (647)
Q Consensus 473 ~~~~~l~~--lp~~~i~~l~~L~~L~l~~~-~~n~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~--~~~l~~l 546 (647)
++|..+.. ++.. +..+++|++|++.++ ... .......++.++ +|+.|+++.+. ++. ..+
T Consensus 150 ~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~-------------~~~~~~~~~~l~~~L~~L~l~~~~~~~~~-~~l 214 (336)
T 2ast_B 150 SGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFT-------------EKHVQVAVAHVSETITQLNLSGYRKNLQK-SDL 214 (336)
T ss_dssp TTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCC-------------HHHHHHHHHHSCTTCCEEECCSCGGGSCH-HHH
T ss_pred CCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcC-------------hHHHHHHHHhcccCCCEEEeCCCcccCCH-HHH
Confidence 99854552 5554 788999999988876 331 122455678889 99999999774 321 223
Q ss_pred hhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCC--ChhhccccCCceEEeecc
Q 039519 547 LISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLED--FQMIIQRSSLSVHNLFIN 612 (647)
Q Consensus 547 ~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~--~~~~~~l~~L~~L~L~~~ 612 (647)
+......++|+.|+++++..+..-.+..+..+++|++|+|++|..... +..++.+++|++|++++|
T Consensus 215 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 215 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 333344568888999886545544444578899999999999963221 124788999999999996
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.59 E-value=4.2e-15 Score=146.27 Aligned_cols=97 Identities=18% Similarity=0.209 Sum_probs=47.1
Q ss_pred EEEEeecccccccccCCCCcceeeEEeccCccccccC-ccccccccCCCeeeecCCCCCcccc-chhcCccCcEEeeccc
Q 039519 398 RRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKL-PLGISTLVSLEHLDLSSTAITHLPI-DLQKLVNLKCLNLQYM 475 (647)
Q Consensus 398 ~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~ 475 (647)
+.++++++.++.+|..++ +.++.|++++| .+..+ |..+.++++|++|+|++|.++.++. .+..+++|++|++++|
T Consensus 17 ~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIP--ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp TEEECTTCCCSSCCSCCC--TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred eEEecCCCCccccCCCCC--CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 345555555555554332 24555555555 23232 2234555555555555555554432 2455555555555555
Q ss_pred ccCCcCchhhhcCCCCCcEEecc
Q 039519 476 YNLNQFPRLVISAFSKLQVLRMF 498 (647)
Q Consensus 476 ~~l~~lp~~~i~~l~~L~~L~l~ 498 (647)
.+..+|...++.+++|++|++.
T Consensus 94 -~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 94 -QLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECC
T ss_pred -cccccChhHhcccCCCCEEEcC
Confidence 4445544434555555555443
No 80
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=3.2e-15 Score=154.77 Aligned_cols=238 Identities=15% Similarity=0.065 Sum_probs=170.3
Q ss_pred ceEEecCCCcccCccccccccEEEEEeecccccccccC-CCCcceeeEEeccCccccccCcc-ccccccCCCe-eeecCC
Q 039519 376 NFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSEL-QPALTFFLFFNMSNNHLLWKLPL-GISTLVSLEH-LDLSST 452 (647)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~-L~L~~~ 452 (647)
+.+.+.+.+++.+|.-. ++++++|+|++|+|+.+|.. +.++++|++|++++|...+.+|. .|.++++|+. +.+++|
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 45778888898888632 46899999999999999875 68999999999999955566764 4688988775 566778
Q ss_pred CCCccc-cchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCC-CCC
Q 039519 453 AITHLP-IDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGM-KYL 530 (647)
Q Consensus 453 ~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l-~~L 530 (647)
+++.+| ..+..+++|++|++++| .+..+|...+....++..|++.+ .+.+..++... +..+ ..+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~--~~~i~~l~~~~-----------f~~~~~~l 156 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQD--NINIHTIERNS-----------FVGLSFES 156 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEES--CTTCCEECTTS-----------STTSBSSC
T ss_pred cccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhcc--ccccccccccc-----------hhhcchhh
Confidence 999885 56889999999999998 77888874344555666665543 34555555433 2333 357
Q ss_pred cEEEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChhhccccCCceEEee
Q 039519 531 MAVTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQMIIQRSSLSVHNLF 610 (647)
Q Consensus 531 ~~L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~ 610 (647)
+.|+++.|.++.+. .......++..+.+.+.+.+..++-..|..+++|+.|+|++|.+...++. .+.+|+.|.+.
T Consensus 157 ~~L~L~~N~i~~i~---~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l 231 (350)
T 4ay9_X 157 VILWLNKNGIQEIH---NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRAR 231 (350)
T ss_dssp EEEECCSSCCCEEC---TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECT
T ss_pred hhhccccccccCCC---hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhc
Confidence 88999888776543 22223356888888877888888866688999999999999865444432 35566777666
Q ss_pred cccccccccchhhhhhhcCCCCcccC
Q 039519 611 INKNYIHTNQLSILLGINRLPHFTKS 636 (647)
Q Consensus 611 ~~~~~~~~~~~~~l~~l~~L~~L~~~ 636 (647)
+|.+... ++.+.++++|+.+...
T Consensus 232 ~~~~l~~---lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 232 STYNLKK---LPTLEKLVALMEASLT 254 (350)
T ss_dssp TCTTCCC---CCCTTTCCSCCEEECS
T ss_pred cCCCcCc---CCCchhCcChhhCcCC
Confidence 6644433 3345566667666544
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.58 E-value=2e-15 Score=147.49 Aligned_cols=208 Identities=14% Similarity=0.146 Sum_probs=151.2
Q ss_pred EeecccccccccCCCCcceeeEEeccCccccccCcc-ccccccCCCeeeecCCC-CCcccc-chhcCccCcEEeeccccc
Q 039519 401 SLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPL-GISTLVSLEHLDLSSTA-ITHLPI-DLQKLVNLKCLNLQYMYN 477 (647)
Q Consensus 401 ~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~L~~~~-l~~lp~-~~~~l~~L~~L~l~~~~~ 477 (647)
.+..+.++.+|. ++ +.+++|++++| .+..+|. .+..+++|++|++++|. ++.+|. .+.++++|++|++++|+.
T Consensus 17 ~v~c~~l~~ip~-~~--~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~ 92 (239)
T 2xwt_C 17 RVTCKDIQRIPS-LP--PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92 (239)
T ss_dssp EEEECSCSSCCC-CC--TTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT
T ss_pred eeEccCccccCC-CC--CcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC
Confidence 344445777776 43 37899999999 6777765 68899999999999997 998885 788999999999998338
Q ss_pred CCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCc---EEEEEec-chhhHHHHhhhhhhh
Q 039519 478 LNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLM---AVTITLK-RLQALQELLISQELQ 553 (647)
Q Consensus 478 l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~~~~l~~l~~~~~~~ 553 (647)
+..+|...+..+++|++|++.++ .+..+|. ++.+++|+ .|+++.| .++.+.. .....+
T Consensus 93 l~~i~~~~f~~l~~L~~L~l~~n---~l~~lp~-------------~~~l~~L~~L~~L~l~~N~~l~~i~~--~~~~~l 154 (239)
T 2xwt_C 93 LTYIDPDALKELPLLKFLGIFNT---GLKMFPD-------------LTKVYSTDIFFILEITDNPYMTSIPV--NAFQGL 154 (239)
T ss_dssp CCEECTTSEECCTTCCEEEEEEE---CCCSCCC-------------CTTCCBCCSEEEEEEESCTTCCEECT--TTTTTT
T ss_pred eeEcCHHHhCCCCCCCEEeCCCC---CCccccc-------------cccccccccccEEECCCCcchhhcCc--ccccch
Confidence 88998766889999999988864 3322221 55666666 9999988 6655421 112334
Q ss_pred hccc-eeeeeccCCCceEEEecccccCCccEEEEcCCC-CCCCCh-hhccc-cCCceEEeecccccccccchhhhhhhcC
Q 039519 554 RCTQ-FLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCK-HLEDFQ-MIIQR-SSLSVHNLFINKNYIHTNQLSILLGINR 629 (647)
Q Consensus 554 ~~l~-~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~-~~~~~~-~~~~l-~~L~~L~L~~~~~~~~~~~~~~l~~l~~ 629 (647)
.+|+ .+++++ +++..++...+.. ++|++|+|++|. ....++ .|..+ ++|+.|+|++| .+...+.. .+++
T Consensus 155 ~~L~~~L~l~~-n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N--~l~~l~~~---~~~~ 227 (239)
T 2xwt_C 155 CNETLTLKLYN-NGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT--SVTALPSK---GLEH 227 (239)
T ss_dssp BSSEEEEECCS-CCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC--CCCCCCCT---TCTT
T ss_pred hcceeEEEcCC-CCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC--ccccCChh---Hhcc
Confidence 5777 888876 5677665444555 899999999995 544444 38889 99999999995 34432222 5677
Q ss_pred CCCcccCC
Q 039519 630 LPHFTKSN 637 (647)
Q Consensus 630 L~~L~~~~ 637 (647)
|+.|+..+
T Consensus 228 L~~L~l~~ 235 (239)
T 2xwt_C 228 LKELIARN 235 (239)
T ss_dssp CSEEECTT
T ss_pred CceeeccC
Confidence 77776554
No 82
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.58 E-value=2.2e-15 Score=166.44 Aligned_cols=171 Identities=19% Similarity=0.265 Sum_probs=112.4
Q ss_pred ccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccchhcCccCc
Q 039519 389 PEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLVNLK 468 (647)
Q Consensus 389 ~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~L~ 468 (647)
.....+++|+.|++++|.+..++. +..+++|+.|+|++| .+..+|+ +..+++|++|+|++|.++.+| .+..+++|+
T Consensus 37 ~~~~~L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 37 VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLK 112 (605)
T ss_dssp ECHHHHTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCC
T ss_pred cchhcCCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCC
Confidence 344556677777888887777763 466777888888887 5666664 777888888888888877766 577788888
Q ss_pred EEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhhHHHHhh
Q 039519 469 CLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQALQELLI 548 (647)
Q Consensus 469 ~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~ 548 (647)
+|+|++| .+..+|. +..+++|+.|++.++ .+. .. ..++.+++|+.|+++.|.+..+..
T Consensus 113 ~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N---~l~-----------~l--~~l~~l~~L~~L~Ls~N~l~~~~~--- 170 (605)
T 1m9s_A 113 SLSLEHN-GISDING--LVHLPQLESLYLGNN---KIT-----------DI--TVLSRLTKLDTLSLEDNQISDIVP--- 170 (605)
T ss_dssp EEECTTS-CCCCCGG--GGGCTTCSEEECCSS---CCC-----------CC--GGGGSCTTCSEEECCSSCCCCCGG---
T ss_pred EEEecCC-CCCCCcc--ccCCCccCEEECCCC---ccC-----------Cc--hhhcccCCCCEEECcCCcCCCchh---
Confidence 8888887 5666664 677788888766653 321 11 346677777777776554433211
Q ss_pred hhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChhhccccCCceEEeecc
Q 039519 549 SQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQMIIQRSSLSVHNLFIN 612 (647)
Q Consensus 549 ~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~ 612 (647)
+..+++|+.|+|++|.+. .+|.+..+++|+.|+|++|
T Consensus 171 --------------------------l~~l~~L~~L~Ls~N~i~-~l~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 171 --------------------------LAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQ 207 (605)
T ss_dssp --------------------------GTTCTTCCEEECCSSCCC-BCGGGTTCTTCSEEECCSE
T ss_pred --------------------------hccCCCCCEEECcCCCCC-CChHHccCCCCCEEEccCC
Confidence 344556666666666433 3455666666666666664
No 83
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.58 E-value=3.6e-15 Score=165.22 Aligned_cols=202 Identities=21% Similarity=0.129 Sum_probs=107.7
Q ss_pred ccccEEEEEeecccccccccCCCCcceeeEEeccCccccccC---ccccccccCCCeeeecCCCCCccccchhcCccCcE
Q 039519 393 NWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKL---PLGISTLVSLEHLDLSSTAITHLPIDLQKLVNLKC 469 (647)
Q Consensus 393 ~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~l---p~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~L~~ 469 (647)
.+++++.|++.+|.+...... ..+++|++|++++| .+... |..+..+++|++|++++|.++.+|..+..+++|++
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~ 400 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 400 (570)
T ss_dssp BCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCE
T ss_pred cccccCEEeCcCCcccccccc-ccCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCCccccccccccccCCCCE
Confidence 344555555555544332222 44555666666666 33332 44555666666666666666666555666666666
Q ss_pred EeecccccCCcC-chhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhhHHHHhh
Q 039519 470 LNLQYMYNLNQF-PRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQALQELLI 548 (647)
Q Consensus 470 L~l~~~~~l~~l-p~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~ 548 (647)
|++++| .+..+ |...+..+++|++|++.++.. ....+..++.+++|+.|+++.|.+... .++.
T Consensus 401 L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l--------------~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~p~ 464 (570)
T 2z63_A 401 LDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHT--------------RVAFNGIFNGLSSLEVLKMAGNSFQEN-FLPD 464 (570)
T ss_dssp EECTTS-EEESCTTSCTTTTCTTCCEEECTTSCC--------------EECCTTTTTTCTTCCEEECTTCEEGGG-EECS
T ss_pred EEccCC-ccccccchhhhhcCCCCCEEeCcCCcc--------------cccchhhhhcCCcCcEEECcCCcCccc-cchh
Confidence 666665 33333 212255566666665554322 222333455666777777765554310 0112
Q ss_pred hhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChh-hccccCCceEEeeccc
Q 039519 549 SQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQM-IIQRSSLSVHNLFINK 613 (647)
Q Consensus 549 ~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~~~ 613 (647)
....+++|+.|++++ +++..+....+..+++|++|+|++|...+.+|. +..+++|+.|++++|+
T Consensus 465 ~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 465 IFTELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CCTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhcccCCCEEECCC-CccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 223334556666655 345444334466667777777777765555543 6667777777777754
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.57 E-value=6.8e-15 Score=147.96 Aligned_cols=151 Identities=23% Similarity=0.283 Sum_probs=125.0
Q ss_pred ccceEEecCCCcccCc--cccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecC
Q 039519 374 KENFLVHAGFGLTEAP--EIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSS 451 (647)
Q Consensus 374 ~~~~l~~~~~~~~~~~--~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~ 451 (647)
....+...+..+..++ .+..+++|+.|++++|.+..++.. ..+++|++|++++| .+..+|..+..+++|++|++++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSF 109 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCS
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCC
Confidence 3445666666666553 578889999999999999998876 78899999999999 7889999899999999999999
Q ss_pred CCCCccc-cchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCC
Q 039519 452 TAITHLP-IDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYL 530 (647)
Q Consensus 452 ~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L 530 (647)
|.++.+| ..+..+++|++|++++| .+..+|.+.+..+++|+.|++.+ |++..++..+ +..+++|
T Consensus 110 N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~---N~l~~l~~~~-----------~~~l~~L 174 (290)
T 1p9a_G 110 NRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLAN---NNLTELPAGL-----------LNGLENL 174 (290)
T ss_dssp SCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTT---SCCSCCCTTT-----------TTTCTTC
T ss_pred CcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCC---CcCCccCHHH-----------hcCcCCC
Confidence 9999887 56899999999999999 78899988778999999997764 6665555433 5678888
Q ss_pred cEEEEEecchh
Q 039519 531 MAVTITLKRLQ 541 (647)
Q Consensus 531 ~~L~l~~~~~~ 541 (647)
+.|+++.|.++
T Consensus 175 ~~L~L~~N~l~ 185 (290)
T 1p9a_G 175 DTLLLQENSLY 185 (290)
T ss_dssp CEEECCSSCCC
T ss_pred CEEECCCCcCC
Confidence 88888866544
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.56 E-value=1.7e-15 Score=159.12 Aligned_cols=232 Identities=16% Similarity=0.136 Sum_probs=133.2
Q ss_pred ccccccEEEEEeecccccc-----cccCCCCcceeeEEeccCccccc----cCcccc-------ccccCCCeeeecCCCC
Q 039519 391 IQNWRNVRRMSLMKNKIEN-----LSELQPALTFFLFFNMSNNHLLW----KLPLGI-------STLVSLEHLDLSSTAI 454 (647)
Q Consensus 391 ~~~~~~l~~L~l~~n~i~~-----l~~~~~~l~~L~~L~l~~~~~~~----~lp~~~-------~~L~~L~~L~L~~~~l 454 (647)
+..+++++.|++++|.+.. ++..+..+++|++|++++| .+. .+|..+ ..+++|++|+|++|.+
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 4456778888888887765 3334567788888888876 332 334443 6778888888888887
Q ss_pred Cc-----cccchhcCccCcEEeecccccCCcCchhh----hcCC---------CCCcEEeccccCCCcccccccccccCC
Q 039519 455 TH-----LPIDLQKLVNLKCLNLQYMYNLNQFPRLV----ISAF---------SKLQVLRMFDCGGSKIERLKSNVLFGG 516 (647)
Q Consensus 455 ~~-----lp~~~~~l~~L~~L~l~~~~~l~~lp~~~----i~~l---------~~L~~L~l~~~~~n~~~~~~~~~~~~~ 516 (647)
.. +|..+..+++|++|+|++| .+...+... +..+ ++|++|++.++..... .
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~-~--------- 175 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG-S--------- 175 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG-G---------
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH-H---------
Confidence 75 6777888888888888887 443222111 2233 7888887665432100 0
Q ss_pred ccccHHHhhCCCCCcEEEEEecchh--hHHHHhh-hhhhhhccceeeeeccCCCc-----eEEEecccccCCccEEEEcC
Q 039519 517 HQVLVEELIGMKYLMAVTITLKRLQ--ALQELLI-SQELQRCTQFLFLRCFNDSK-----SLDIFCLACLHNLNKLYVAG 588 (647)
Q Consensus 517 ~~~~~~~l~~l~~L~~L~l~~~~~~--~l~~l~~-~~~~~~~l~~l~L~~~~~L~-----~L~l~~~~~l~~L~~L~L~~ 588 (647)
.......+..+++|+.|+++.|.++ ++..+.. .....++|+.|+|+++ .+. .+. ..+..+++|++|+|++
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~-~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALA-IALKSWPNLRELGLND 253 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHH-HHGGGCTTCCEEECTT
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHH-HHHccCCCcCEEECCC
Confidence 0111135666777777777777665 2222222 3333445666666552 231 111 1255667777777777
Q ss_pred CCCCCC----Ch-hh--ccccCCceEEeeccccccccc----chhhh-hhhcCCCCcccCCC
Q 039519 589 CKHLED----FQ-MI--IQRSSLSVHNLFINKNYIHTN----QLSIL-LGINRLPHFTKSNP 638 (647)
Q Consensus 589 ~~~~~~----~~-~~--~~l~~L~~L~L~~~~~~~~~~----~~~~l-~~l~~L~~L~~~~~ 638 (647)
|.+... ++ .+ +.+++|++|+|++|. +... ....+ .++++|++|+..+.
T Consensus 254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~--i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNE--IELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC--CBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred CCCchhhHHHHHHHHhhccCCCeEEEECcCCc--CCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 754332 12 23 236777777777742 3331 12223 44667776665544
No 86
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.56 E-value=1.2e-14 Score=155.60 Aligned_cols=114 Identities=20% Similarity=0.283 Sum_probs=84.7
Q ss_pred cceEEecCCCcccCccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCC
Q 039519 375 ENFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAI 454 (647)
Q Consensus 375 ~~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l 454 (647)
-+.+...+..+..+|.+..+++|++|++++|.+..+|..+ ..|++|++++| .+..+| .++.+++|++|++++|.+
T Consensus 133 L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 133 LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNNSL 207 (454)
T ss_dssp CCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCC
T ss_pred CCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC-cCCcCc-cccCCCCCCEEECCCCcC
Confidence 4456666667777778888888888888888888776543 46788888888 666677 688888888888888888
Q ss_pred CccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccc
Q 039519 455 THLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFD 499 (647)
Q Consensus 455 ~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 499 (647)
+.+|... ++|++|++++| .+..+|. ++.+++|++|++.+
T Consensus 208 ~~l~~~~---~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 208 KKLPDLP---LSLESIVAGNN-ILEELPE--LQNLPFLTTIYADN 246 (454)
T ss_dssp SSCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCS
T ss_pred CcCCCCc---CcccEEECcCC-cCCcccc--cCCCCCCCEEECCC
Confidence 7777532 47788888877 5667774 67777888876654
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.55 E-value=7.8e-15 Score=149.21 Aligned_cols=225 Identities=14% Similarity=0.046 Sum_probs=144.4
Q ss_pred ccEEEEEeecccccc--cccCC--CCcceeeEEeccCccccccCcccc--ccccCCCeeeecCCCCCc-cc----cchhc
Q 039519 395 RNVRRMSLMKNKIEN--LSELQ--PALTFFLFFNMSNNHLLWKLPLGI--STLVSLEHLDLSSTAITH-LP----IDLQK 463 (647)
Q Consensus 395 ~~l~~L~l~~n~i~~--l~~~~--~~l~~L~~L~l~~~~~~~~lp~~~--~~L~~L~~L~L~~~~l~~-lp----~~~~~ 463 (647)
..++.+.+.++.+.. +.... ..++.|++|++++|......|..+ ..+++|++|++++|.++. .| ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 346667777665542 11111 223458888888885555666666 788888888888888774 22 23456
Q ss_pred CccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccc---cccccccCCccccHHHhhCCCCCcEEEEEecch
Q 039519 464 LVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIER---LKSNVLFGGHQVLVEELIGMKYLMAVTITLKRL 540 (647)
Q Consensus 464 l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~---~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 540 (647)
+++|++|++++| .+..++...++.+++|++|++.++ ++.+ ++. ...++.+++|++|+++.|.+
T Consensus 144 ~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N---~l~~~~~~~~----------~~~~~~l~~L~~L~Ls~N~l 209 (310)
T 4glp_A 144 KPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDN---PGLGERGLMA----------ALCPHKFPAIQNLALRNTGM 209 (310)
T ss_dssp CSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSC---TTCHHHHHHT----------TSCTTSSCCCCSCBCCSSCC
T ss_pred ccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCC---CCccchhhhH----------HHhhhcCCCCCEEECCCCCC
Confidence 788888888887 566666544778888888866653 3211 111 01135677888888888887
Q ss_pred hhHHHHhhh-hhhhhccceeeeeccCCCceEEEecccc---cCCccEEEEcCCCCCCCChhhccccCCceEEeecccccc
Q 039519 541 QALQELLIS-QELQRCTQFLFLRCFNDSKSLDIFCLAC---LHNLNKLYVAGCKHLEDFQMIIQRSSLSVHNLFINKNYI 616 (647)
Q Consensus 541 ~~l~~l~~~-~~~~~~l~~l~L~~~~~L~~L~l~~~~~---l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 616 (647)
+.+...... ...+.+|+.|+|++ +++..+....+.. +++|++|+|++|.+...++.+. ++|+.|+|++| .+
T Consensus 210 ~~l~~~~~~l~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N--~l 284 (310)
T 4glp_A 210 ETPTGVCAALAAAGVQPHSLDLSH-NSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSN--RL 284 (310)
T ss_dssp CCHHHHHHHHHHHTCCCSSEECTT-SCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSC--CC
T ss_pred CchHHHHHHHHhcCCCCCEEECCC-CCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCC--cC
Confidence 766554332 23456788888887 5666653222333 3799999999987664444453 79999999985 34
Q ss_pred cccchhhhhhhcCCCCcccCCCCc
Q 039519 617 HTNQLSILLGINRLPHFTKSNPYH 640 (647)
Q Consensus 617 ~~~~~~~l~~l~~L~~L~~~~~~~ 640 (647)
... +.+..+++|+.|+..++.+
T Consensus 285 ~~~--~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 285 NRA--PQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CSC--CCTTSCCCCSCEECSSTTT
T ss_pred CCC--chhhhCCCccEEECcCCCC
Confidence 422 3357788888887776543
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=3.2e-15 Score=153.86 Aligned_cols=223 Identities=17% Similarity=0.144 Sum_probs=162.7
Q ss_pred EEEEEeecccccccccCCCCc--ceeeEEeccCccccccCccccccccCCCeeeecCCCCC-c-cccchhcCccCcEEee
Q 039519 397 VRRMSLMKNKIENLSELQPAL--TFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAIT-H-LPIDLQKLVNLKCLNL 472 (647)
Q Consensus 397 l~~L~l~~n~i~~l~~~~~~l--~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~-~-lp~~~~~l~~L~~L~l 472 (647)
.+.++++++.+. +..+..+ +.++.|++++| .+...+..+..+++|++|++++|.++ . +|..+..+++|++|++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 556788877765 2333444 67899999999 66666667888999999999999987 3 8888999999999999
Q ss_pred cccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCcc-ccHHHhhCCCCCcEEEEEec-chhhHHHHhhhh
Q 039519 473 QYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQ-VLVEELIGMKYLMAVTITLK-RLQALQELLISQ 550 (647)
Q Consensus 473 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~-~~~~l~~l~~~~ 550 (647)
++|......|.. ++.+++|++|++.++.. + .. .....+..+++|+.|+++.+ .++... +....
T Consensus 126 ~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~--l-----------~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~ 190 (336)
T 2ast_B 126 EGLRLSDPIVNT-LAKNSNLVRLNLSGCSG--F-----------SEFALQTLLSSCSRLDELNLSWCFDFTEKH-VQVAV 190 (336)
T ss_dssp TTCBCCHHHHHH-HTTCTTCSEEECTTCBS--C-----------CHHHHHHHHHHCTTCCEEECCCCTTCCHHH-HHHHH
T ss_pred cCcccCHHHHHH-HhcCCCCCEEECCCCCC--C-----------CHHHHHHHHhcCCCCCEEcCCCCCCcChHH-HHHHH
Confidence 999432345555 88899999999887632 1 22 24455788999999999988 666421 22223
Q ss_pred hhhh-ccceeeeeccC-CCceEEE-ecccccCCccEEEEcCCCCC--CCChhhccccCCceEEeecccccccccchhhhh
Q 039519 551 ELQR-CTQFLFLRCFN-DSKSLDI-FCLACLHNLNKLYVAGCKHL--EDFQMIIQRSSLSVHNLFINKNYIHTNQLSILL 625 (647)
Q Consensus 551 ~~~~-~l~~l~L~~~~-~L~~L~l-~~~~~l~~L~~L~L~~~~~~--~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~ 625 (647)
...+ +|+.|+++++. ++..-.+ ..+..+++|++|+|++|... ..++.++.+++|++|+|++|. .+....+..++
T Consensus 191 ~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~ 269 (336)
T 2ast_B 191 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY-DIIPETLLELG 269 (336)
T ss_dssp HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT-TCCGGGGGGGG
T ss_pred HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC-CCCHHHHHHHh
Confidence 3455 78888888754 3332111 12567999999999999743 234568999999999999985 34444455688
Q ss_pred hhcCCCCcccCCC
Q 039519 626 GINRLPHFTKSNP 638 (647)
Q Consensus 626 ~l~~L~~L~~~~~ 638 (647)
++++|+.|+..+.
T Consensus 270 ~~~~L~~L~l~~~ 282 (336)
T 2ast_B 270 EIPTLKTLQVFGI 282 (336)
T ss_dssp GCTTCCEEECTTS
T ss_pred cCCCCCEEeccCc
Confidence 8999998877654
No 89
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.52 E-value=2.1e-14 Score=156.89 Aligned_cols=189 Identities=19% Similarity=0.172 Sum_probs=103.6
Q ss_pred eEEecCCCcccCccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCc
Q 039519 377 FLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITH 456 (647)
Q Consensus 377 ~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~ 456 (647)
.+...+..+..+|... +++|+.|++++|.++.+| ..+++|++|++++| .+..+|. +++ +|++|++++|.++.
T Consensus 63 ~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N~l~~ 134 (571)
T 3cvr_A 63 ELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNNQLTM 134 (571)
T ss_dssp EEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSSCCSC
T ss_pred EEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCCcCCC
Confidence 3444444454444421 245666666666666555 23455666666666 4444554 443 56666666666666
Q ss_pred cccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEE
Q 039519 457 LPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTIT 536 (647)
Q Consensus 457 lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 536 (647)
+|. .+++|++|++++| .+..+|. .+++|+.|++.+ |++..+|. +. ++|+.|+++
T Consensus 135 lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~---N~L~~lp~-------------l~--~~L~~L~Ls 188 (571)
T 3cvr_A 135 LPE---LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRN---NQLTFLPE-------------LP--ESLEALDVS 188 (571)
T ss_dssp CCC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCS---SCCSCCCC-------------CC--TTCCEEECC
T ss_pred CCC---cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCC---CCCCCcch-------------hh--CCCCEEECc
Confidence 655 4556666666665 4455554 245555554443 33322221 11 455555555
Q ss_pred ecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecc-----cccCCccEEEEcCCCCCCCChhhccccCCceEEeec
Q 039519 537 LKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCL-----ACLHNLNKLYVAGCKHLEDFQMIIQRSSLSVHNLFI 611 (647)
Q Consensus 537 ~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~-----~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~ 611 (647)
.|.+ ..++. + .....|+.|+|++|.+...++.+..+++|+.|+|++
T Consensus 189 ~N~L---------------------------~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 189 TNLL---------------------------ESLPA--VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILED 239 (571)
T ss_dssp SSCC---------------------------SSCCC--CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCS
T ss_pred CCCC---------------------------Cchhh--HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeC
Confidence 4443 32221 1 122334889999887665555577789999999988
Q ss_pred ccccccccchhhhhhhcCC
Q 039519 612 NKNYIHTNQLSILLGINRL 630 (647)
Q Consensus 612 ~~~~~~~~~~~~l~~l~~L 630 (647)
| .+....+..+..+...
T Consensus 240 N--~l~~~~p~~l~~l~~~ 256 (571)
T 3cvr_A 240 N--PLSSRIRESLSQQTAQ 256 (571)
T ss_dssp S--SCCHHHHHHHHHHHHS
T ss_pred C--cCCCcCHHHHHHhhcC
Confidence 4 4665666666666543
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.50 E-value=7.4e-15 Score=149.37 Aligned_cols=201 Identities=12% Similarity=0.023 Sum_probs=140.9
Q ss_pred ccccEEEEEeecccccc-cccCC--CCcceeeEEeccCccccccCc----cccccccCCCeeeecCCCCCccc-cchhcC
Q 039519 393 NWRNVRRMSLMKNKIEN-LSELQ--PALTFFLFFNMSNNHLLWKLP----LGISTLVSLEHLDLSSTAITHLP-IDLQKL 464 (647)
Q Consensus 393 ~~~~l~~L~l~~n~i~~-l~~~~--~~l~~L~~L~l~~~~~~~~lp----~~~~~L~~L~~L~L~~~~l~~lp-~~~~~l 464 (647)
.++++++|++++|.+.. .|..+ ..+++|++|++++|......| ..+..+++|++|++++|.+..+| ..++.+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 34679999999999876 55555 788999999999994333333 23457899999999999998665 678899
Q ss_pred ccCcEEeecccccCCc---Cchh-hhcCCCCCcEEeccccCCCcccccccccccCCccccHH-HhhCCCCCcEEEEEecc
Q 039519 465 VNLKCLNLQYMYNLNQ---FPRL-VISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVE-ELIGMKYLMAVTITLKR 539 (647)
Q Consensus 465 ~~L~~L~l~~~~~l~~---lp~~-~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~ 539 (647)
++|++|++++|. +.. ++.. .++.+++|++|++.+ |++..++ ..+. -++.+++|+.|+++.|.
T Consensus 169 ~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~Ls~---N~l~~l~---------~~~~~l~~~l~~L~~L~Ls~N~ 235 (310)
T 4glp_A 169 PALTSLDLSDNP-GLGERGLMAALCPHKFPAIQNLALRN---TGMETPT---------GVCAALAAAGVQPHSLDLSHNS 235 (310)
T ss_dssp TTCCEEECCSCT-TCHHHHHHTTSCTTSSCCCCSCBCCS---SCCCCHH---------HHHHHHHHHTCCCSSEECTTSC
T ss_pred CCCCEEECCCCC-CccchhhhHHHhhhcCCCCCEEECCC---CCCCchH---------HHHHHHHhcCCCCCEEECCCCC
Confidence 999999999983 322 3222 136788888887765 4432211 1122 25788999999999887
Q ss_pred hhhHHHHhhhhhh---hhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChhhccccCCceEEeeccc
Q 039519 540 LQALQELLISQEL---QRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQMIIQRSSLSVHNLFINK 613 (647)
Q Consensus 540 ~~~l~~l~~~~~~---~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~ 613 (647)
+.... +..... .++|+.|++++ +++..++- .+ +++|++|+|++|...+. |.+..+++|+.|+|++|+
T Consensus 236 l~~~~--p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~-~~--~~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 236 LRATV--NPSAPRCMWSSALNSLNLSF-AGLEQVPK-GL--PAKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCC--CSCCSSCCCCTTCCCEECCS-SCCCSCCS-CC--CSCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTT
T ss_pred CCccc--hhhHHhccCcCcCCEEECCC-CCCCchhh-hh--cCCCCEEECCCCcCCCC-chhhhCCCccEEECcCCC
Confidence 76531 111111 24788888876 56665542 12 38999999999966544 557889999999999963
No 91
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.49 E-value=6.8e-15 Score=157.59 Aligned_cols=174 Identities=16% Similarity=0.176 Sum_probs=72.2
Q ss_pred ccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCC-------------CeeeecCCCCCccccch
Q 039519 395 RNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSL-------------EHLDLSSTAITHLPIDL 461 (647)
Q Consensus 395 ~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L-------------~~L~L~~~~l~~lp~~~ 461 (647)
+.+++|++++|.+..+|..+.++++|++|++++|...+.+|..++.+.+| ++|++++|.++.+|..
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~- 89 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL- 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC-
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC-
Confidence 45666666666665566555666666666666654444555555555443 5555555555555541
Q ss_pred hcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCccccccc---cc-----ccCCccccHHHhhCCCCCcEE
Q 039519 462 QKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKS---NV-----LFGGHQVLVEELIGMKYLMAV 533 (647)
Q Consensus 462 ~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~---~~-----~~~~~~~~~~~l~~l~~L~~L 533 (647)
.++|++|++++| .+..+|.. +++|++|++.+ |++..++. .+ ........+ .++.+++|+.|
T Consensus 90 --~~~L~~L~l~~n-~l~~lp~~----~~~L~~L~l~~---n~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L 158 (454)
T 1jl5_A 90 --PPHLESLVASCN-SLTELPEL----PQSLKSLLVDN---NNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKII 158 (454)
T ss_dssp --CTTCSEEECCSS-CCSSCCCC----CTTCCEEECCS---SCCSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEE
T ss_pred --cCCCCEEEccCC-cCCccccc----cCCCcEEECCC---CccCcccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEE
Confidence 244555555554 34444431 24444444332 22222111 00 000001112 47788888888
Q ss_pred EEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCC
Q 039519 534 TITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGC 589 (647)
Q Consensus 534 ~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~ 589 (647)
+++.|.++.++. ...+|+.|++++ +++..++ .++.+++|++|++++|
T Consensus 159 ~l~~N~l~~lp~------~~~~L~~L~L~~-n~l~~l~--~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 159 DVDNNSLKKLPD------LPPSLEFIAAGN-NQLEELP--ELQNLPFLTAIYADNN 205 (454)
T ss_dssp ECCSSCCSCCCC------CCTTCCEEECCS-SCCSSCC--CCTTCTTCCEEECCSS
T ss_pred ECCCCcCcccCC------CcccccEEECcC-CcCCcCc--cccCCCCCCEEECCCC
Confidence 888777665321 123667776665 2333322 2444444444444444
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=1.9e-13 Score=134.33 Aligned_cols=175 Identities=20% Similarity=0.267 Sum_probs=132.2
Q ss_pred ceEEecCCCcccCccccccccEEEEEeeccccccccc-CCCCcceeeEEeccCccccccCc-cccccccCCCeeeecCCC
Q 039519 376 NFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSE-LQPALTFFLFFNMSNNHLLWKLP-LGISTLVSLEHLDLSSTA 453 (647)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~L~~L~~L~L~~~~ 453 (647)
..+.+.+..++.+|... .++++.|++++|.+..++. .+.++++|++|++++| .+..++ ..+..+++|++|++++|.
T Consensus 17 ~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp TEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred eEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCc
Confidence 45777788888887633 3689999999999999766 4688999999999999 555554 458999999999999999
Q ss_pred CCcccc-chhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcE
Q 039519 454 ITHLPI-DLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMA 532 (647)
Q Consensus 454 l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 532 (647)
++.+|. .++.+++|++|++++| .+..+|...++.+++|+.|++.+ |.+..+++ ..++.+++|+.
T Consensus 95 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~---N~l~~~~~-----------~~~~~l~~L~~ 159 (251)
T 3m19_A 95 LASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNT---NQLQSIPA-----------GAFDKLTNLQT 159 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS---SCCCCCCT-----------TTTTTCTTCCE
T ss_pred ccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcC---CcCCccCH-----------HHcCcCcCCCE
Confidence 998874 5689999999999999 78899987678899999997765 55533332 23566777777
Q ss_pred EEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCC
Q 039519 533 VTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLED 594 (647)
Q Consensus 533 L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~ 594 (647)
|+++.|.++. +....+..+++|++|+|++|+....
T Consensus 160 L~L~~N~l~~---------------------------~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 160 LSLSTNQLQS---------------------------VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp EECCSSCCSC---------------------------CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred EECCCCcCCc---------------------------cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 7776443332 2212355677788888888876544
No 93
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=1.3e-14 Score=143.73 Aligned_cols=165 Identities=22% Similarity=0.275 Sum_probs=94.7
Q ss_pred cccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccchhcCccCcEEeec
Q 039519 394 WRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLVNLKCLNLQ 473 (647)
Q Consensus 394 ~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~ 473 (647)
+.++..+.+.++.+++++ .+..+++|++|++++| .+..+| .+..+++|++|++++|.++.+|. ++++++|++|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 344555566666666655 3355666777777777 566666 56677777777777777776665 6677777777777
Q ss_pred ccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhhHHHHhhhhhhh
Q 039519 474 YMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQALQELLISQELQ 553 (647)
Q Consensus 474 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~ 553 (647)
+| .+..+|. +.. .+|++|++.++ .+.. +..++.+++|+.|+++.|.++.+
T Consensus 94 ~N-~l~~l~~--~~~-~~L~~L~L~~N---~l~~-------------~~~l~~l~~L~~L~Ls~N~i~~~---------- 143 (263)
T 1xeu_A 94 RN-RLKNLNG--IPS-ACLSRLFLDNN---ELRD-------------TDSLIHLKNLEILSIRNNKLKSI---------- 143 (263)
T ss_dssp SS-CCSCCTT--CCC-SSCCEEECCSS---CCSB-------------SGGGTTCTTCCEEECTTSCCCBC----------
T ss_pred CC-ccCCcCc--ccc-CcccEEEccCC---ccCC-------------ChhhcCcccccEEECCCCcCCCC----------
Confidence 76 5666665 233 66666655543 2211 12355666666666654433322
Q ss_pred hccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChhhccccCCceEEeecc
Q 039519 554 RCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQMIIQRSSLSVHNLFIN 612 (647)
Q Consensus 554 ~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~ 612 (647)
..+..+++|++|+|++|..... +.+..+++|+.|++++|
T Consensus 144 -------------------~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 144 -------------------VMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp -------------------GGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEE
T ss_pred -------------------hHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCC
Confidence 1133455555555555543333 44555555555555553
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.46 E-value=1.4e-13 Score=138.49 Aligned_cols=145 Identities=20% Similarity=0.312 Sum_probs=121.1
Q ss_pred cceEEecCCCcccCccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCC
Q 039519 375 ENFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAI 454 (647)
Q Consensus 375 ~~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l 454 (647)
-+.+...+..+..++.+..+++|+.|++++|.+..++. +.++++|++|++++| .+..+| .+..+++|++|++++|.+
T Consensus 48 L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~i 124 (291)
T 1h6t_A 48 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLSLEHNGI 124 (291)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEECTTSCC
T ss_pred ccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCCh-hhccCCCCCEEECCCCcC
Confidence 34566677778888889999999999999999999887 788999999999999 677776 599999999999999999
Q ss_pred CccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEE
Q 039519 455 THLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVT 534 (647)
Q Consensus 455 ~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 534 (647)
+.++ .+..+++|++|++++| .+..++. ++.+++|++|++.++ .+. ...+ +..+++|+.|+
T Consensus 125 ~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N---~l~-----------~~~~--l~~l~~L~~L~ 184 (291)
T 1h6t_A 125 SDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDN---QIS-----------DIVP--LAGLTKLQNLY 184 (291)
T ss_dssp CCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSS---CCC-----------CCGG--GTTCTTCCEEE
T ss_pred CCCh-hhcCCCCCCEEEccCC-cCCcchh--hccCCCCCEEEccCC---ccc-----------cchh--hcCCCccCEEE
Confidence 9885 6899999999999999 7788854 899999999988764 332 2111 78899999999
Q ss_pred EEecchhh
Q 039519 535 ITLKRLQA 542 (647)
Q Consensus 535 l~~~~~~~ 542 (647)
++.|.++.
T Consensus 185 L~~N~i~~ 192 (291)
T 1h6t_A 185 LSKNHISD 192 (291)
T ss_dssp CCSSCCCB
T ss_pred CCCCcCCC
Confidence 98666543
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=2.6e-13 Score=128.07 Aligned_cols=37 Identities=22% Similarity=0.146 Sum_probs=26.1
Q ss_pred ccccCCccEEEEcCCCCCCCChhhccccCCceEEeecc
Q 039519 575 LACLHNLNKLYVAGCKHLEDFQMIIQRSSLSVHNLFIN 612 (647)
Q Consensus 575 ~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~ 612 (647)
+..+++|++|++++|... .++.+..+++|++|++++|
T Consensus 155 l~~l~~L~~L~l~~n~i~-~~~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 155 LKTLPELKSLNIQFDGVH-DYRGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp GGGCSSCCEEECTTBCCC-CCTTGGGCSSCCEEEECBC
T ss_pred hcCCCCCCEEECCCCCCc-ChHHhccCCCCCEEEeeCc
Confidence 445677777778777543 3556777888888888875
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.44 E-value=3.5e-13 Score=129.51 Aligned_cols=97 Identities=21% Similarity=0.293 Sum_probs=62.3
Q ss_pred EEEeecccccccccCCCCcceeeEEeccCccccccCcc-ccccccCCCeeeecCCCCCcc-ccchhcCccCcEEeecccc
Q 039519 399 RMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPL-GISTLVSLEHLDLSSTAITHL-PIDLQKLVNLKCLNLQYMY 476 (647)
Q Consensus 399 ~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~ 476 (647)
.++..++.++.+|..++ +.++.|++++| .+..+|. .+..+++|++|+|++|.++.+ |..+.++++|++|+|++|
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N- 90 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN- 90 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-
Confidence 45566666666665443 45667777777 4444443 566677777777777777755 556777777777777776
Q ss_pred cCCcCchhhhcCCCCCcEEeccc
Q 039519 477 NLNQFPRLVISAFSKLQVLRMFD 499 (647)
Q Consensus 477 ~l~~lp~~~i~~l~~L~~L~l~~ 499 (647)
.+..+|.+.+..+++|+.|++.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~ 113 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNA 113 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCS
T ss_pred cCCccCHhHccCCCCCCEEECCC
Confidence 56667666556666676665543
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.43 E-value=1.7e-13 Score=151.29 Aligned_cols=144 Identities=20% Similarity=0.321 Sum_probs=120.0
Q ss_pred ceEEecCCCcccCccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCC
Q 039519 376 NFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAIT 455 (647)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~ 455 (647)
..+...+..+..++.+..+++|+.|+|++|.+..++. +..+++|+.|+|++| .+..+| .++.+++|++|+|++|.++
T Consensus 46 ~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~l~ 122 (605)
T 1m9s_A 46 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNGIS 122 (605)
T ss_dssp CCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSCCC
T ss_pred CEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCCCC
Confidence 3455566677788889999999999999999999877 688899999999999 777776 7999999999999999999
Q ss_pred ccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEE
Q 039519 456 HLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTI 535 (647)
Q Consensus 456 ~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 535 (647)
.+| .+..+++|+.|+|++| .+..++. ++.+++|+.|++.++ .+ ....+ +..+++|+.|++
T Consensus 123 ~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N---~l-----------~~~~~--l~~l~~L~~L~L 182 (605)
T 1m9s_A 123 DIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDN---QI-----------SDIVP--LAGLTKLQNLYL 182 (605)
T ss_dssp CCG-GGGGCTTCSEEECCSS-CCCCCGG--GGSCTTCSEEECCSS---CC-----------CCCGG--GTTCTTCCEEEC
T ss_pred CCc-cccCCCccCEEECCCC-ccCCchh--hcccCCCCEEECcCC---cC-----------CCchh--hccCCCCCEEEC
Confidence 886 5899999999999999 7788854 899999999988764 33 22222 788999999999
Q ss_pred Eecchhh
Q 039519 536 TLKRLQA 542 (647)
Q Consensus 536 ~~~~~~~ 542 (647)
+.|.++.
T Consensus 183 s~N~i~~ 189 (605)
T 1m9s_A 183 SKNHISD 189 (605)
T ss_dssp CSSCCCB
T ss_pred cCCCCCC
Confidence 8776654
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.43 E-value=1.4e-13 Score=142.32 Aligned_cols=215 Identities=15% Similarity=0.131 Sum_probs=149.0
Q ss_pred EEEEeecccccccccCCCCcceeeEEeccCccccccCcc-ccccccCCCeeeecCCCCC-cccc-chhcCccCcEEeecc
Q 039519 398 RRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPL-GISTLVSLEHLDLSSTAIT-HLPI-DLQKLVNLKCLNLQY 474 (647)
Q Consensus 398 ~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~L~~~~l~-~lp~-~~~~l~~L~~L~l~~ 474 (647)
+.++-++++++.+|..++ ++++.|+|++| .++.+|. .|.+|++|++|+|++|.+. .+|. .+.++++|+++...+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 356778888999987653 57899999999 7888886 4899999999999999975 5664 578899988765554
Q ss_pred cccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEe-cchhhHHHHhhhhhhh
Q 039519 475 MYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITL-KRLQALQELLISQELQ 553 (647)
Q Consensus 475 ~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~l~~l~~~~~~~ 553 (647)
++.+..+|++.+..+++|++|++.+ |.+..++... +....++..|++.. +.+..+.. .......
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~---n~l~~~~~~~-----------~~~~~~l~~l~l~~~~~i~~l~~-~~f~~~~ 153 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISN---TGIKHLPDVH-----------KIHSLQKVLLDIQDNINIHTIER-NSFVGLS 153 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEE---ECCSSCCCCT-----------TCCBSSCEEEEEESCTTCCEECT-TSSTTSB
T ss_pred CCcccccCchhhhhccccccccccc---cccccCCchh-----------hcccchhhhhhhccccccccccc-cchhhcc
Confidence 4488999877789999999998876 4444433321 22334566666653 22322211 0011222
Q ss_pred hccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChh--hccccCCceEEeecccccccccchhhhhhhcCCC
Q 039519 554 RCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQM--IIQRSSLSVHNLFINKNYIHTNQLSILLGINRLP 631 (647)
Q Consensus 554 ~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~ 631 (647)
..++.|+|++ ++++++.-..+ ...+|++|.+.+|+.++.+|. |+.+++|+.|+|++| .+...+...+.++++|+
T Consensus 154 ~~l~~L~L~~-N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N--~l~~lp~~~~~~L~~L~ 229 (350)
T 4ay9_X 154 FESVILWLNK-NGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT--RIHSLPSYGLENLKKLR 229 (350)
T ss_dssp SSCEEEECCS-SCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS--CCCCCCSSSCTTCCEEE
T ss_pred hhhhhhcccc-ccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC--CcCccChhhhccchHhh
Confidence 3567788877 67887764333 456899999987767777774 899999999999995 35444444566666665
Q ss_pred Ccc
Q 039519 632 HFT 634 (647)
Q Consensus 632 ~L~ 634 (647)
.+.
T Consensus 230 ~l~ 232 (350)
T 4ay9_X 230 ARS 232 (350)
T ss_dssp CTT
T ss_pred hcc
Confidence 543
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.42 E-value=7.1e-13 Score=127.39 Aligned_cols=149 Identities=22% Similarity=0.318 Sum_probs=122.3
Q ss_pred cceEEecCCCcccCccccccccEEEEEeeccccccccc-CCCCcceeeEEeccCccccccC-ccccccccCCCeeeecCC
Q 039519 375 ENFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSE-LQPALTFFLFFNMSNNHLLWKL-PLGISTLVSLEHLDLSST 452 (647)
Q Consensus 375 ~~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~L~L~~~ 452 (647)
...+.+.+.+++.+|... .++++.|++++|.+..++. .+..+++|++|++++| .+..+ |..|.++++|++|+|++|
T Consensus 13 ~~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TTEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS
T ss_pred CCEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC
Confidence 346777888888887633 3789999999999999876 4688999999999999 55554 778999999999999999
Q ss_pred CCCccccc-hhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCc
Q 039519 453 AITHLPID-LQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLM 531 (647)
Q Consensus 453 ~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 531 (647)
.++.+|.. +..+++|++|+|++| .+..++...+..+++|++|++.+ |.+..++. ..+..+++|+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~---N~l~~~~~-----------~~~~~l~~L~ 155 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYD---NKLQTIAK-----------GTFSPLRAIQ 155 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS---SCCSCCCT-----------TTTTTCTTCC
T ss_pred cCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCC---CcCCEECH-----------HHHhCCCCCC
Confidence 99999865 588999999999999 77888766688999999997765 66644443 2366788999
Q ss_pred EEEEEecch
Q 039519 532 AVTITLKRL 540 (647)
Q Consensus 532 ~L~l~~~~~ 540 (647)
.|+++.|.+
T Consensus 156 ~L~L~~N~~ 164 (220)
T 2v9t_B 156 TMHLAQNPF 164 (220)
T ss_dssp EEECCSSCE
T ss_pred EEEeCCCCc
Confidence 999997765
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.42 E-value=8.7e-13 Score=124.43 Aligned_cols=147 Identities=14% Similarity=0.189 Sum_probs=100.7
Q ss_pred ceEEecCCCcccCccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCC
Q 039519 376 NFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAIT 455 (647)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~ 455 (647)
..+...+..+..+|.+..+++|+.|++++|.+..++ .+..+++|++|++++|......|..++.+++|++|++++|.++
T Consensus 47 ~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~ 125 (197)
T 4ezg_A 47 TYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125 (197)
T ss_dssp CEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCB
T ss_pred cEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccC
Confidence 345555566667677777788888888888776655 3466777888888887333335667778888888888888877
Q ss_pred -ccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEE
Q 039519 456 -HLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVT 534 (647)
Q Consensus 456 -~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 534 (647)
..|..++.+++|++|++++|..+..+|. +..+++|+.|++.++.. .. +..+..+++|+.|+
T Consensus 126 ~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i---~~-------------~~~l~~l~~L~~L~ 187 (197)
T 4ezg_A 126 DSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGV---HD-------------YRGIEDFPKLNQLY 187 (197)
T ss_dssp GGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCC---CC-------------CTTGGGCSSCCEEE
T ss_pred cHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCC---cC-------------hHHhccCCCCCEEE
Confidence 4666777888888888888744777774 77788888887665433 11 11466777788888
Q ss_pred EEecchh
Q 039519 535 ITLKRLQ 541 (647)
Q Consensus 535 l~~~~~~ 541 (647)
++.|.+.
T Consensus 188 l~~N~i~ 194 (197)
T 4ezg_A 188 AFSQTIG 194 (197)
T ss_dssp ECBC---
T ss_pred eeCcccC
Confidence 8766543
No 101
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.41 E-value=4.3e-14 Score=148.49 Aligned_cols=225 Identities=13% Similarity=0.081 Sum_probs=153.3
Q ss_pred EeecccccccccCCCCcceeeEEeccCcccccc----CccccccccCCCeeeecCCCCC----ccccch-------hcCc
Q 039519 401 SLMKNKIENLSELQPALTFFLFFNMSNNHLLWK----LPLGISTLVSLEHLDLSSTAIT----HLPIDL-------QKLV 465 (647)
Q Consensus 401 ~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~----lp~~~~~L~~L~~L~L~~~~l~----~lp~~~-------~~l~ 465 (647)
.+....+..++..+..+++|+.|++++|..... ++..+..+++|++|+|++|.+. .+|..+ ..++
T Consensus 15 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~ 94 (386)
T 2ca6_A 15 AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP 94 (386)
T ss_dssp SCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT
T ss_pred CCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC
Confidence 334444555555556778899999999933322 3445778999999999998655 445554 6889
Q ss_pred cCcEEeecccccCCc-----CchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCC---------CCCc
Q 039519 466 NLKCLNLQYMYNLNQ-----FPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGM---------KYLM 531 (647)
Q Consensus 466 ~L~~L~l~~~~~l~~-----lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l---------~~L~ 531 (647)
+|++|+|++| .+.. +|.. +..+++|++|++.++.. ..... ......+..+ ++|+
T Consensus 95 ~L~~L~Ls~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l---~~~~~-------~~l~~~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 95 KLHTVRLSDN-AFGPTAQEPLIDF-LSKHTPLEHLYLHNNGL---GPQAG-------AKIARALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp TCCEEECCSC-CCCTTTHHHHHHH-HHHCTTCCEEECCSSCC---HHHHH-------HHHHHHHHHHHHHHHHHTCCCCC
T ss_pred cccEEECCCC-cCCHHHHHHHHHH-HHhCCCCCEEECcCCCC---CHHHH-------HHHHHHHHHHhhhhhcccCCCCc
Confidence 9999999998 5555 6665 78899999998876543 11110 1122234444 8999
Q ss_pred EEEEEecchh--hHHHHhhhhhhhhccceeeeeccCCCceEE----Ee-cccccCCccEEEEcCCCCC----CCCh-hhc
Q 039519 532 AVTITLKRLQ--ALQELLISQELQRCTQFLFLRCFNDSKSLD----IF-CLACLHNLNKLYVAGCKHL----EDFQ-MII 599 (647)
Q Consensus 532 ~L~l~~~~~~--~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~----l~-~~~~l~~L~~L~L~~~~~~----~~~~-~~~ 599 (647)
.|+++.|.++ .+..+.......++|+.|.++++ ++..-. +. .+..+++|++|+|++|.+. ..+| .+.
T Consensus 163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~ 241 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241 (386)
T ss_dssp EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc
Confidence 9999998875 55544444445567888888874 444211 12 4778999999999999753 4444 588
Q ss_pred cccCCceEEeecccccccccch----hhh--hhhcCCCCcccCCCCc
Q 039519 600 QRSSLSVHNLFINKNYIHTNQL----SIL--LGINRLPHFTKSNPYH 640 (647)
Q Consensus 600 ~l~~L~~L~L~~~~~~~~~~~~----~~l--~~l~~L~~L~~~~~~~ 640 (647)
.+++|++|+|++|. +..... ..+ +.+++|+.|+..+..+
T Consensus 242 ~~~~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 242 SWPNLRELGLNDCL--LSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp GCTTCCEEECTTCC--CCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred cCCCcCEEECCCCC--CchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 99999999999964 443322 233 2378899888776544
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.41 E-value=4e-13 Score=139.61 Aligned_cols=174 Identities=18% Similarity=0.222 Sum_probs=99.2
Q ss_pred EEEEeecccccccccCCCCcceeeEEeccCccccccCccc-cc-cccCCCeeeecCCCCCccc-cchhcCccCcEEeecc
Q 039519 398 RRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLG-IS-TLVSLEHLDLSSTAITHLP-IDLQKLVNLKCLNLQY 474 (647)
Q Consensus 398 ~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~-~~-~L~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~ 474 (647)
+.++++++.++.+|..++. .++.|+|++| .+..+|.. +. .+++|++|+|++|.|+.+| ..+.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~iP~~~~~--~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPS--YTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCCT--TCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCCC--CCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 3566666666666654432 3566777777 45555443 33 6777777777777777665 3466777777777777
Q ss_pred cccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhhHHHHhhhhhhhh
Q 039519 475 MYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQALQELLISQELQR 554 (647)
Q Consensus 475 ~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~ 554 (647)
| .+..+|...+..+++|+.|++.+ |.+..++ +..+..+++|+.|+++.|.++.++. .
T Consensus 98 N-~l~~~~~~~~~~l~~L~~L~L~~---N~i~~~~-----------~~~~~~l~~L~~L~L~~N~l~~l~~---~----- 154 (361)
T 2xot_A 98 N-HLHTLDEFLFSDLQALEVLLLYN---NHIVVVD-----------RNAFEDMAQLQKLYLSQNQISRFPV---E----- 154 (361)
T ss_dssp S-CCCEECTTTTTTCTTCCEEECCS---SCCCEEC-----------TTTTTTCTTCCEEECCSSCCCSCCG---G-----
T ss_pred C-cCCcCCHHHhCCCcCCCEEECCC---CcccEEC-----------HHHhCCcccCCEEECCCCcCCeeCH---H-----
Confidence 6 56666665566677777775553 4442222 2235566666666666554432110 0
Q ss_pred ccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCCh-hhccccC--CceEEeeccc
Q 039519 555 CTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQ-MIIQRSS--LSVHNLFINK 613 (647)
Q Consensus 555 ~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~--L~~L~L~~~~ 613 (647)
.+. .+..+++|+.|+|++|.+...++ .+..++. |+.|+|++|+
T Consensus 155 -----~~~-----------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 155 -----LIK-----------DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp -----GTC---------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred -----Hhc-----------CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 000 01346677777777775544443 2566665 3677777755
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.41 E-value=4.7e-13 Score=127.51 Aligned_cols=120 Identities=28% Similarity=0.345 Sum_probs=77.6
Q ss_pred eEEecCCCcccCccccccccEEEEEeecccccccccC-CCCcceeeEEeccCccccccCccc-cccccCCCeeeecCCCC
Q 039519 377 FLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSEL-QPALTFFLFFNMSNNHLLWKLPLG-ISTLVSLEHLDLSSTAI 454 (647)
Q Consensus 377 ~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~-~~~l~~L~~L~l~~~~~~~~lp~~-~~~L~~L~~L~L~~~~l 454 (647)
.+.+.+.+++.+|.. ..+++++|++++|.+..++.. +.++++|++|++++| .+..+|.. +..+++|++|++++|.+
T Consensus 11 ~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcC
Confidence 345555556555532 245677777777777776654 366677777777777 55555543 46677777777777777
Q ss_pred Cccccc-hhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccc
Q 039519 455 THLPID-LQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFD 499 (647)
Q Consensus 455 ~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 499 (647)
+.+|.. ++.+++|++|++++| .+..+|...+..+++|++|++.+
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 133 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQ 133 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCC
Confidence 766643 567777777777776 56666665456667777775554
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.40 E-value=1.6e-12 Score=124.97 Aligned_cols=98 Identities=15% Similarity=0.221 Sum_probs=75.3
Q ss_pred EEEEeecccccccccCCCCcceeeEEeccCccccccCcc--ccccccCCCeeeecCCCCCcccc-chhcCccCcEEeecc
Q 039519 398 RRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPL--GISTLVSLEHLDLSSTAITHLPI-DLQKLVNLKCLNLQY 474 (647)
Q Consensus 398 ~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~--~~~~L~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~ 474 (647)
+.+++++|.++.+|..++. .+++|++++| .+..++. .+..+++|++|+|++|.++.+|. .++++++|++|+|++
T Consensus 14 ~~l~~s~n~l~~iP~~~~~--~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQ--YTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCCCT--TCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCCCC--CCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 3688888888888876543 3578888888 5666532 37888889999999988887765 688888899999988
Q ss_pred cccCCcCchhhhcCCCCCcEEeccc
Q 039519 475 MYNLNQFPRLVISAFSKLQVLRMFD 499 (647)
Q Consensus 475 ~~~l~~lp~~~i~~l~~L~~L~l~~ 499 (647)
| .+..+|.+.++.+++|++|++.+
T Consensus 91 N-~l~~~~~~~~~~l~~L~~L~Ls~ 114 (220)
T 2v70_A 91 N-RLENVQHKMFKGLESLKTLMLRS 114 (220)
T ss_dssp S-CCCCCCGGGGTTCSSCCEEECTT
T ss_pred C-ccCccCHhHhcCCcCCCEEECCC
Confidence 8 67777776677888888886654
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.39 E-value=6.2e-13 Score=126.65 Aligned_cols=178 Identities=17% Similarity=0.218 Sum_probs=121.3
Q ss_pred EEEEeecccccccccCCCCcceeeEEeccCccccccCccc-cccccCCCeeeecCCCCCccccc-hhcCccCcEEeeccc
Q 039519 398 RRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLG-ISTLVSLEHLDLSSTAITHLPID-LQKLVNLKCLNLQYM 475 (647)
Q Consensus 398 ~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~L~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~ 475 (647)
+.++..++.+..+|..++ ++|++|++++| .+..+|.. +..+++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIP--AQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCCC--CCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 356777788888876543 47899999999 66666654 68999999999999999988764 588999999999998
Q ss_pred ccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhhHHHHhhhhhhhhc
Q 039519 476 YNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQALQELLISQELQRC 555 (647)
Q Consensus 476 ~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~ 555 (647)
.+..+|...++.+++|++|++.+ |.+..++. ..++.+++|+.|+++.|.++.+
T Consensus 87 -~l~~~~~~~~~~l~~L~~L~L~~---N~l~~~~~-----------~~~~~l~~L~~L~l~~N~l~~~------------ 139 (208)
T 2o6s_A 87 -QLQSLPNGVFDKLTQLKELALNT---NQLQSLPD-----------GVFDKLTQLKDLRLYQNQLKSV------------ 139 (208)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCS---SCCCCCCT-----------TTTTTCTTCCEEECCSSCCSCC------------
T ss_pred -cCCccCHhHhcCccCCCEEEcCC---CcCcccCH-----------hHhccCCcCCEEECCCCcccee------------
Confidence 77888887678899999997765 55533332 2356778888888875544321
Q ss_pred cceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChhhccccCCceEEeecccccccccchhhhhhhc
Q 039519 556 TQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQMIIQRSSLSVHNLFINKNYIHTNQLSILLGIN 628 (647)
Q Consensus 556 l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~ 628 (647)
....+..+++|++|+|++|+.. +.+++|++|+++.| .+.......++.++
T Consensus 140 ---------------~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n--~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 140 ---------------PDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWIN--KHSGVVRNSAGSVA 189 (208)
T ss_dssp ---------------CTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHH--HCTTTBBCTTSSBC
T ss_pred ---------------CHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHH--hCCceeeccCcccc
Confidence 1112445666666667666432 33456666666663 23333333444443
No 106
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.39 E-value=1.7e-13 Score=147.48 Aligned_cols=83 Identities=18% Similarity=0.147 Sum_probs=43.7
Q ss_pred cccccEEEEEeecccccc-----cccCCCCcceeeEEeccCcccccc-Ccccc-cccc----CCCeeeecCCCCC-----
Q 039519 392 QNWRNVRRMSLMKNKIEN-----LSELQPALTFFLFFNMSNNHLLWK-LPLGI-STLV----SLEHLDLSSTAIT----- 455 (647)
Q Consensus 392 ~~~~~l~~L~l~~n~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~-lp~~~-~~L~----~L~~L~L~~~~l~----- 455 (647)
..++++++|++++|.+.. ++..+..+++|++|++++| .+.. .+..+ ..+. +|++|++++|.++
T Consensus 25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 345566666666666552 3333344555666666666 2322 12122 1233 4666666666655
Q ss_pred ccccchhcCccCcEEeeccc
Q 039519 456 HLPIDLQKLVNLKCLNLQYM 475 (647)
Q Consensus 456 ~lp~~~~~l~~L~~L~l~~~ 475 (647)
.+|..+..+++|++|++++|
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n 123 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDN 123 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSS
T ss_pred HHHHHHccCCceeEEECCCC
Confidence 34555566666666666665
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.39 E-value=2.9e-12 Score=123.95 Aligned_cols=95 Identities=24% Similarity=0.346 Sum_probs=54.1
Q ss_pred EEeecccccccccCCCCcceeeEEeccCccccccC-ccccccccCCCeeeecCCCCCccccc-hhcCccCcEEeeccccc
Q 039519 400 MSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKL-PLGISTLVSLEHLDLSSTAITHLPID-LQKLVNLKCLNLQYMYN 477 (647)
Q Consensus 400 L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~ 477 (647)
++.+++.+..+|..++ ++|++|++++| .+..+ |..+..+++|++|+|++|.++.+|.. +..+++|++|+|++| .
T Consensus 24 v~c~~~~l~~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~ 99 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIP--TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-Q 99 (229)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred eEccCCCcCccCCCCC--CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-c
Confidence 4555555555554332 45666666666 33333 44556666666666666666666533 456666666666666 5
Q ss_pred CCcCchhhhcCCCCCcEEecc
Q 039519 478 LNQFPRLVISAFSKLQVLRMF 498 (647)
Q Consensus 478 l~~lp~~~i~~l~~L~~L~l~ 498 (647)
+..+|...+..+++|+.|++.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls 120 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMC 120 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECC
T ss_pred CCccChhHhCcchhhCeEecc
Confidence 556655545556666666444
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.36 E-value=2e-12 Score=125.08 Aligned_cols=147 Identities=22% Similarity=0.260 Sum_probs=121.2
Q ss_pred eEEecCCCcccCccccccccEEEEEeeccccccc-ccCCCCcceeeEEeccCccccccCccc-cccccCCCeeeecCCCC
Q 039519 377 FLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENL-SELQPALTFFLFFNMSNNHLLWKLPLG-ISTLVSLEHLDLSSTAI 454 (647)
Q Consensus 377 ~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~L~~L~~L~L~~~~l 454 (647)
-+.+.+..+..+|.. -.++++.|++++|.+..+ |..+.++++|++|++++| .+..+|.. +..+++|++|+|++|.+
T Consensus 23 ~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 23 TVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp EEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcC
Confidence 466777788888763 348999999999999997 455688999999999999 67777754 68999999999999999
Q ss_pred Cccccc-hhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEE
Q 039519 455 THLPID-LQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAV 533 (647)
Q Consensus 455 ~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 533 (647)
+.+|.. +..+++|++|++++| .+..+|.. +..+++|++|++.+ |++..++. ..+..+++|+.|
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~---N~l~~~~~-----------~~~~~l~~L~~L 164 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQ---NQLKSIPH-----------GAFDRLSSLTHA 164 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCS---SCCCCCCT-----------TTTTTCTTCCEE
T ss_pred CccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCC---CcCCccCH-----------HHHhCCCCCCEE
Confidence 988865 689999999999999 78899987 78999999997765 66644443 336778999999
Q ss_pred EEEecchh
Q 039519 534 TITLKRLQ 541 (647)
Q Consensus 534 ~l~~~~~~ 541 (647)
++..|.+.
T Consensus 165 ~l~~N~~~ 172 (229)
T 3e6j_A 165 YLFGNPWD 172 (229)
T ss_dssp ECTTSCBC
T ss_pred EeeCCCcc
Confidence 99977643
No 109
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.36 E-value=3.3e-13 Score=140.29 Aligned_cols=205 Identities=13% Similarity=0.058 Sum_probs=117.8
Q ss_pred ccEEEEEeeccccccccc-----CCCCcc-eeeEEeccCcccccc-Cccccccc-----cCCCeeeecCCCCCccc-cc-
Q 039519 395 RNVRRMSLMKNKIENLSE-----LQPALT-FFLFFNMSNNHLLWK-LPLGISTL-----VSLEHLDLSSTAITHLP-ID- 460 (647)
Q Consensus 395 ~~l~~L~l~~n~i~~l~~-----~~~~l~-~L~~L~l~~~~~~~~-lp~~~~~L-----~~L~~L~L~~~~l~~lp-~~- 460 (647)
+++++|++++|.+...+. .+..++ +|++|++++| .+.. .+..+..+ ++|++|+|++|.++..+ ..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 458888888888877653 335565 7888888888 4443 34455554 78888888888887443 32
Q ss_pred ---hhcC-ccCcEEeecccccCCcCchhhhc----C-CCCCcEEeccccCCCcccccccccccCCccccHHHhhCCC-CC
Q 039519 461 ---LQKL-VNLKCLNLQYMYNLNQFPRLVIS----A-FSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMK-YL 530 (647)
Q Consensus 461 ---~~~l-~~L~~L~l~~~~~l~~lp~~~i~----~-l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~-~L 530 (647)
+..+ ++|++|++++| .+...+...+. . .++|++|++.+ |.+... ........+..++ +|
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~---N~l~~~-------~~~~l~~~l~~~~~~L 169 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRG---NDLGIK-------SSDELIQILAAIPANV 169 (362)
T ss_dssp HHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTT---SCGGGS-------CHHHHHHHHHTSCTTC
T ss_pred HHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccC---CcCCHH-------HHHHHHHHHhcCCccc
Confidence 3444 78888888887 55666543232 2 25788886665 333110 0112233445554 77
Q ss_pred cEEEEEecchhhHH--HHhhhhhhh-hccceeeeeccCCCceEEEe----cccc-cCCccEEEEcCCCCCCCCh-----h
Q 039519 531 MAVTITLKRLQALQ--ELLISQELQ-RCTQFLFLRCFNDSKSLDIF----CLAC-LHNLNKLYVAGCKHLEDFQ-----M 597 (647)
Q Consensus 531 ~~L~l~~~~~~~l~--~l~~~~~~~-~~l~~l~L~~~~~L~~L~l~----~~~~-l~~L~~L~L~~~~~~~~~~-----~ 597 (647)
+.|+++.|.++... .+....... .+|+.|+|++ +.+...... .+.. .++|++|+|++|......+ .
T Consensus 170 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 248 (362)
T 3goz_A 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA-NLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLL 248 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT-SCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHT
T ss_pred cEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC-CCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHH
Confidence 88887777664322 111111111 3566666665 233331111 1222 3577777777775544333 1
Q ss_pred hccccCCceEEeecc
Q 039519 598 IIQRSSLSVHNLFIN 612 (647)
Q Consensus 598 ~~~l~~L~~L~L~~~ 612 (647)
+..+++|+.|+|++|
T Consensus 249 ~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 249 KDSLKHLQTVYLDYD 263 (362)
T ss_dssp TTTTTTCSEEEEEHH
T ss_pred HhcCCCccEEEeccC
Confidence 356677777777775
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.35 E-value=2e-12 Score=124.21 Aligned_cols=149 Identities=15% Similarity=0.164 Sum_probs=119.2
Q ss_pred ceEEecCCCcccCccccccccEEEEEeeccccccccc-C-CCCcceeeEEeccCccccccCcc-ccccccCCCeeeecCC
Q 039519 376 NFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSE-L-QPALTFFLFFNMSNNHLLWKLPL-GISTLVSLEHLDLSST 452 (647)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~-~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~L~~~ 452 (647)
..+.+.+..++.+|... ...++.|++++|.+..++. . +.++++|++|++++| .+..++. .|..+++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC
Confidence 45677777788877532 4578899999999999843 3 578899999999999 5666654 7999999999999999
Q ss_pred CCCcccc-chhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCc
Q 039519 453 AITHLPI-DLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLM 531 (647)
Q Consensus 453 ~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 531 (647)
.++.+|. .++.+++|++|++++| .+..+++..+..+++|+.|++.+ |++..+ .+..+..+++|+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~---N~l~~~-----------~~~~~~~l~~L~ 156 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYD---NQITTV-----------APGAFDTLHSLS 156 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTT---SCCCCB-----------CTTTTTTCTTCC
T ss_pred ccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCC---CcCCEE-----------CHHHhcCCCCCC
Confidence 9998875 4889999999999999 67777655588999999997765 555333 334477889999
Q ss_pred EEEEEecchh
Q 039519 532 AVTITLKRLQ 541 (647)
Q Consensus 532 ~L~l~~~~~~ 541 (647)
.|+++.|.+.
T Consensus 157 ~L~L~~N~l~ 166 (220)
T 2v70_A 157 TLNLLANPFN 166 (220)
T ss_dssp EEECCSCCEE
T ss_pred EEEecCcCCc
Confidence 9999977654
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.35 E-value=1.1e-12 Score=143.15 Aligned_cols=172 Identities=19% Similarity=0.207 Sum_probs=126.9
Q ss_pred ccceEEecCCCcccCccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCC
Q 039519 374 KENFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTA 453 (647)
Q Consensus 374 ~~~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~ 453 (647)
.-..+...+..+..+| ..+++|+.|++++|.++.+|. +++ +|++|++++| .+..+|. .+++|++|++++|.
T Consensus 81 ~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~ 151 (571)
T 3cvr_A 81 QITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN-QLTMLPE---LPALLEYINADNNQ 151 (571)
T ss_dssp TCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC
T ss_pred CCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC-cCCCCCC---cCccccEEeCCCCc
Confidence 4567777788888888 567899999999999999888 554 8999999999 7777887 68999999999999
Q ss_pred CCccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHh-hCCCCCcE
Q 039519 454 ITHLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEEL-IGMKYLMA 532 (647)
Q Consensus 454 l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~ 532 (647)
++.+|. .+++|++|++++| .+..+|. +. ++|+.|++.+ |.+..+|. +. . .| .....
T Consensus 152 l~~lp~---~l~~L~~L~Ls~N-~L~~lp~--l~--~~L~~L~Ls~---N~L~~lp~-~~----~----~L~~~~~~--- 208 (571)
T 3cvr_A 152 LTMLPE---LPTSLEVLSVRNN-QLTFLPE--LP--ESLEALDVST---NLLESLPA-VP----V----RNHHSEET--- 208 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSS-CCSCCCC--CC--TTCCEEECCS---SCCSSCCC-CC----------------C---
T ss_pred cCcCCC---cCCCcCEEECCCC-CCCCcch--hh--CCCCEEECcC---CCCCchhh-HH----H----hhhccccc---
Confidence 999997 6789999999999 7888998 54 8999997765 56555443 21 0 01 11122
Q ss_pred EEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChh-hcccc
Q 039519 533 VTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQM-IIQRS 602 (647)
Q Consensus 533 L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~ 602 (647)
++.|+|++ +++..++ ..+..+++|+.|+|++|++.+.+|. +..++
T Consensus 209 -----------------------L~~L~Ls~-N~l~~lp-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 209 -----------------------EIFFRCRE-NRITHIP-ENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp -----------------------CEEEECCS-SCCCCCC-GGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred -----------------------ceEEecCC-CcceecC-HHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 34444444 3444443 2245588999999999988776663 65543
No 112
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.34 E-value=1.1e-12 Score=141.05 Aligned_cols=157 Identities=14% Similarity=0.072 Sum_probs=84.1
Q ss_pred cccccccEEEEEeeccccccc-----ccC-CCCcceeeEEeccCcccccc-----CccccccccCCCeeeecCCCCCcc-
Q 039519 390 EIQNWRNVRRMSLMKNKIENL-----SEL-QPALTFFLFFNMSNNHLLWK-----LPLGISTLVSLEHLDLSSTAITHL- 457 (647)
Q Consensus 390 ~~~~~~~l~~L~l~~n~i~~l-----~~~-~~~l~~L~~L~l~~~~~~~~-----lp~~~~~L~~L~~L~L~~~~l~~l- 457 (647)
.+..+++|++|++++|.+... ... ....++|++|++++| .+.. ++..+..+++|++|++++|.+...
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 345566777777777766532 111 122345777777777 3332 344455667777777777766532
Q ss_pred ccchh-----cCccCcEEeecccccCCc-----CchhhhcCCCCCcEEeccccCCCcccccccccccCCccccH----HH
Q 039519 458 PIDLQ-----KLVNLKCLNLQYMYNLNQ-----FPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLV----EE 523 (647)
Q Consensus 458 p~~~~-----~l~~L~~L~l~~~~~l~~-----lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~----~~ 523 (647)
+..+. .+++|++|++++| .+.. ++.. +..+++|++|++.++. + ..... ..
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~---l-----------~~~~~~~l~~~ 250 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGI-VASKASLRELALGSNK---L-----------GDVGMAELCPG 250 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHH-HHHCTTCCEEECCSSB---C-----------HHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHH-HHhCCCccEEeccCCc---C-----------ChHHHHHHHHH
Confidence 22222 2457777777776 4444 3443 5566777777665432 2 11111 11
Q ss_pred h-hCCCCCcEEEEEecchhhH--HHHhhhhhhhhccceeeeec
Q 039519 524 L-IGMKYLMAVTITLKRLQAL--QELLISQELQRCTQFLFLRC 563 (647)
Q Consensus 524 l-~~l~~L~~L~l~~~~~~~l--~~l~~~~~~~~~l~~l~L~~ 563 (647)
+ ..+++|+.|+++.|.++.. ..++......++|+.|++++
T Consensus 251 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 293 (461)
T 1z7x_W 251 LLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 293 (461)
T ss_dssp HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC
Confidence 2 2467788888877666542 12222223344566666654
No 113
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.34 E-value=1.5e-12 Score=145.83 Aligned_cols=223 Identities=20% Similarity=0.193 Sum_probs=142.4
Q ss_pred cCccccccccEEEEEeeccccccccc---CCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccc--cch
Q 039519 387 EAPEIQNWRNVRRMSLMKNKIENLSE---LQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLP--IDL 461 (647)
Q Consensus 387 ~~~~~~~~~~l~~L~l~~n~i~~l~~---~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp--~~~ 461 (647)
..+....+++++.|+++.|.+..... ....+..|++++++.+ ....++..+..+++|+.++++.++....+ ..+
T Consensus 363 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~-~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 441 (635)
T 4g8a_A 363 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 441 (635)
T ss_dssp CBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC-SEEEECSCCTTCTTCCEEECTTSEEESTTSSCTT
T ss_pred CCcccccccccccchhhccccccccccccchhhhhhhhhhhcccc-ccccccccccccccccchhhhhcccccccccccc
Confidence 33444455666677776666544222 1234456667777666 44455556667777777777766544322 345
Q ss_pred hcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchh
Q 039519 462 QKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQ 541 (647)
Q Consensus 462 ~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 541 (647)
..+++|+.++++.| .+..++...+..+++|+.|++.+ |... ....+..++.+++|+.|+++.|.++
T Consensus 442 ~~l~~l~~l~ls~n-~l~~~~~~~~~~~~~L~~L~Ls~---N~~~----------~~~~~~~~~~l~~L~~L~Ls~N~L~ 507 (635)
T 4g8a_A 442 LSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAG---NSFQ----------ENFLPDIFTELRNLTFLDLSQCQLE 507 (635)
T ss_dssp TTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTT---CEEG----------GGEECSCCTTCTTCCEEECTTSCCC
T ss_pred cccccccccccccc-ccccccccccccchhhhhhhhhh---cccc----------cccCchhhhhccccCEEECCCCccC
Confidence 66777777777776 44555444466677777776654 2210 1222334677888999999887776
Q ss_pred hHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChh-hccc-cCCceEEeeccccccccc
Q 039519 542 ALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQM-IIQR-SSLSVHNLFINKNYIHTN 619 (647)
Q Consensus 542 ~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l-~~L~~L~L~~~~~~~~~~ 619 (647)
.+. +.....+++|+.|+|++ +++..++...+..+++|++|+|++|.+.+.+|. +..+ ++|++|+|++|+-..++.
T Consensus 508 ~l~--~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 508 QLS--PTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp EEC--TTTTTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CcC--hHHHcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 542 22234456788888887 677777766688899999999999988777774 7777 589999999987655555
Q ss_pred chhhhhhh
Q 039519 620 QLSILLGI 627 (647)
Q Consensus 620 ~~~~l~~l 627 (647)
......++
T Consensus 585 ~~~~~~wl 592 (635)
T 4g8a_A 585 HQSFLQWI 592 (635)
T ss_dssp GHHHHHHH
T ss_pred cHHHHHHH
Confidence 44433333
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.33 E-value=6.7e-15 Score=161.53 Aligned_cols=101 Identities=18% Similarity=0.208 Sum_probs=59.7
Q ss_pred hCCCCCcEEEEEecchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCC--Chhhcccc
Q 039519 525 IGMKYLMAVTITLKRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLED--FQMIIQRS 602 (647)
Q Consensus 525 ~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~--~~~~~~l~ 602 (647)
+.+++|+.|+++.|.++.+ +.....+++|+.|+|++ +++..++ .++.+++|+.|+|++|.+.+. |+.++.++
T Consensus 460 ~~l~~L~~L~Ls~N~l~~l---p~~~~~l~~L~~L~Ls~-N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~ 533 (567)
T 1dce_A 460 EQLLLVTHLDLSHNRLRAL---PPALAALRCLEVLQASD-NALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCP 533 (567)
T ss_dssp GGGTTCCEEECCSSCCCCC---CGGGGGCTTCCEEECCS-SCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT
T ss_pred cccccCcEeecCccccccc---chhhhcCCCCCEEECCC-CCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCC
Confidence 3344444444444443322 22223333444444444 3444443 477889999999999977776 34699999
Q ss_pred CCceEEeeccccccccc-c-h-hhhhhhcCCCCc
Q 039519 603 SLSVHNLFINKNYIHTN-Q-L-SILLGINRLPHF 633 (647)
Q Consensus 603 ~L~~L~L~~~~~~~~~~-~-~-~~l~~l~~L~~L 633 (647)
+|+.|+|++|+ +... + . ..+..+|+|+.|
T Consensus 534 ~L~~L~L~~N~--l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 534 RLVLLNLQGNS--LCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp TCCEEECTTSG--GGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCEEEecCCc--CCCCccHHHHHHHHCcccCcc
Confidence 99999999963 3322 2 1 234447777776
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.32 E-value=8e-13 Score=137.42 Aligned_cols=222 Identities=16% Similarity=0.123 Sum_probs=143.7
Q ss_pred EEeeccccccc-ccCCCCcceeeEEeccCccccccCc-----ccccccc-CCCeeeecCCCCCcc-ccchhcC-----cc
Q 039519 400 MSLMKNKIENL-SELQPALTFFLFFNMSNNHLLWKLP-----LGISTLV-SLEHLDLSSTAITHL-PIDLQKL-----VN 466 (647)
Q Consensus 400 L~l~~n~i~~l-~~~~~~l~~L~~L~l~~~~~~~~lp-----~~~~~L~-~L~~L~L~~~~l~~l-p~~~~~l-----~~ 466 (647)
+.++.|.+.+. |......++|++|++++| .+...+ ..+..++ +|++|+|++|.++.. +..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 56778888764 443355567999999999 566665 5677888 899999999999855 5566664 89
Q ss_pred CcEEeecccccCCcCchhhh----cCC-CCCcEEeccccCCCcccccccccccCCccccHHHhhCC-CCCcEEEEEecch
Q 039519 467 LKCLNLQYMYNLNQFPRLVI----SAF-SKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGM-KYLMAVTITLKRL 540 (647)
Q Consensus 467 L~~L~l~~~~~l~~lp~~~i----~~l-~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~ 540 (647)
|++|++++| .+...+...+ ..+ ++|++|++.+ |.+...+. ......+..+ ++|+.|+++.|.+
T Consensus 82 L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~---N~l~~~~~-------~~l~~~l~~~~~~L~~L~Ls~N~l 150 (362)
T 3goz_A 82 VTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGW---NDFSSKSS-------SEFKQAFSNLPASITSLNLRGNDL 150 (362)
T ss_dssp CCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCS---SCGGGSCH-------HHHHHHHTTSCTTCCEEECTTSCG
T ss_pred ccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcC---CcCCcHHH-------HHHHHHHHhCCCceeEEEccCCcC
Confidence 999999999 5665554323 334 8999997775 44422211 1122234453 6999999998887
Q ss_pred hh--HHHHhhhhhhh-hccceeeeeccCCCceEEEec----cccc-CCccEEEEcCCCCCCC----Ch-hhcc-ccCCce
Q 039519 541 QA--LQELLISQELQ-RCTQFLFLRCFNDSKSLDIFC----LACL-HNLNKLYVAGCKHLED----FQ-MIIQ-RSSLSV 606 (647)
Q Consensus 541 ~~--l~~l~~~~~~~-~~l~~l~L~~~~~L~~L~l~~----~~~l-~~L~~L~L~~~~~~~~----~~-~~~~-l~~L~~ 606 (647)
+. ...+....... .+|+.|+|+++ ++....... +..+ ++|++|+|++|..... ++ .+.. .++|++
T Consensus 151 ~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~ 229 (362)
T 3goz_A 151 GIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCE
T ss_pred CHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceE
Confidence 63 22333222222 37888888873 554433221 3344 6999999999975542 22 3555 459999
Q ss_pred EEeecccccccccchh----hhhhhcCCCCcccC
Q 039519 607 HNLFINKNYIHTNQLS----ILLGINRLPHFTKS 636 (647)
Q Consensus 607 L~L~~~~~~~~~~~~~----~l~~l~~L~~L~~~ 636 (647)
|+|++| .+...... .+..+++|+.|+..
T Consensus 230 L~Ls~N--~l~~~~~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 230 LNLCLN--CLHGPSLENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp EECCSS--CCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred EECcCC--CCCcHHHHHHHHHHhcCCCccEEEec
Confidence 999995 35443332 23445666666443
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=3.4e-12 Score=116.95 Aligned_cols=134 Identities=22% Similarity=0.216 Sum_probs=101.2
Q ss_pred cccEEEEEeeccccc--ccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCc-cccchhcCccCcEE
Q 039519 394 WRNVRRMSLMKNKIE--NLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITH-LPIDLQKLVNLKCL 470 (647)
Q Consensus 394 ~~~l~~L~l~~n~i~--~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~-lp~~~~~l~~L~~L 470 (647)
+++++.|++++|.+. .+|..+..+++|++|++++| .+..+ ..++.+++|++|++++|.++. +|..++++++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 467889999999988 78877788888999999998 56666 678889999999999998886 77777779999999
Q ss_pred eecccccCCcCch-hhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchh
Q 039519 471 NLQYMYNLNQFPR-LVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQ 541 (647)
Q Consensus 471 ~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 541 (647)
++++| .+..+|. ..+..+++|++|++.+ |.+..++. .....+..+++|+.|+++.+...
T Consensus 101 ~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~---N~l~~~~~--------~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGN-KLKDISTLEPLKKLECLKSLDLFN---CEVTNLND--------YRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSS-SCCSSGGGGGGSSCSCCCEEECCS---SGGGTSTT--------HHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCC-ccCcchhHHHHhcCCCCCEEEeeC---CcCcchHH--------HHHHHHHhCccCcEecCCCCChh
Confidence 99988 7777763 2377888888887664 44432221 11135778888888888866543
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.31 E-value=9.7e-12 Score=122.90 Aligned_cols=142 Identities=21% Similarity=0.243 Sum_probs=93.3
Q ss_pred ceEEecCCCcccCccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCC
Q 039519 376 NFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAIT 455 (647)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~ 455 (647)
+.+...+..+..++.+..+++|+.|++++|.+..++. +.++++|++|++++| .+..+|.. .. ++|++|++++|.++
T Consensus 44 ~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~-~~-~~L~~L~L~~N~l~ 119 (263)
T 1xeu_A 44 QNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNGI-PS-ACLSRLFLDNNELR 119 (263)
T ss_dssp SEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTTC-CC-SSCCEEECCSSCCS
T ss_pred cEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCcc-cc-CcccEEEccCCccC
Confidence 3455555566666666777777777777777777666 566777777777777 56666533 33 77777777777777
Q ss_pred ccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEE
Q 039519 456 HLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTI 535 (647)
Q Consensus 456 ~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 535 (647)
.+| .++.+++|++|++++| .+..+|. ++.+++|+.|++.+ |.+.. . ..+..+++|+.|++
T Consensus 120 ~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~---N~i~~-----------~--~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 120 DTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHG---NEITN-----------T--GGLTRLKKVNWIDL 179 (263)
T ss_dssp BSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTT---SCCCB-----------C--TTSTTCCCCCEEEE
T ss_pred CCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCC---CcCcc-----------h--HHhccCCCCCEEeC
Confidence 765 4777777777777777 5666663 66777777776554 33311 1 34566777777777
Q ss_pred Eecchh
Q 039519 536 TLKRLQ 541 (647)
Q Consensus 536 ~~~~~~ 541 (647)
+.|.+.
T Consensus 180 ~~N~~~ 185 (263)
T 1xeu_A 180 TGQKCV 185 (263)
T ss_dssp EEEEEE
T ss_pred CCCccc
Confidence 766544
No 118
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=3.6e-12 Score=117.83 Aligned_cols=141 Identities=20% Similarity=0.187 Sum_probs=111.7
Q ss_pred CccccccccEEEEEeecccccccccCCCCc-ceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccch-hcCc
Q 039519 388 APEIQNWRNVRRMSLMKNKIENLSELQPAL-TFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDL-QKLV 465 (647)
Q Consensus 388 ~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l-~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~-~~l~ 465 (647)
.+.+..+.+++.|++++|.++.+|. +..+ ++|++|++++| .+..+ +.++.+++|++|++++|.++.+|..+ +.++
T Consensus 12 ~~~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 12 AAQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp SCEEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HHhcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 4566778899999999999998865 3444 48999999999 67777 58999999999999999999998665 8999
Q ss_pred cCcEEeecccccCCcCch-hhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchhhH
Q 039519 466 NLKCLNLQYMYNLNQFPR-LVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQAL 543 (647)
Q Consensus 466 ~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l 543 (647)
+|++|++++| .+..+|. ..++.+++|+.|++.+ |.+..++. .....++.+++|+.|+++.+.....
T Consensus 89 ~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~---N~i~~~~~--------~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 89 DLTELILTNN-SLVELGDLDPLASLKSLTYLCILR---NPVTNKKH--------YRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp TCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCS---SGGGGSTT--------HHHHHHHHCTTCSEETTEECCHHHH
T ss_pred CCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecC---CCCCCcHh--------HHHHHHHHCCccceeCCCcCCHHHH
Confidence 9999999999 7788886 2278899999997765 55533322 1122477899999999998776543
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=3.8e-12 Score=114.08 Aligned_cols=127 Identities=19% Similarity=0.249 Sum_probs=94.7
Q ss_pred cccEEEEEeeccccc--ccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCc-cccchhcCccCcEE
Q 039519 394 WRNVRRMSLMKNKIE--NLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITH-LPIDLQKLVNLKCL 470 (647)
Q Consensus 394 ~~~l~~L~l~~n~i~--~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~-lp~~~~~l~~L~~L 470 (647)
+++++.|++++|.+. .+|..+..+++|++|++++| .+..+ ..++.+++|++|++++|.++. +|..++.+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467888999999888 68877788888999999988 66666 578888999999999998886 77777788899999
Q ss_pred eecccccCCcCc--hhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEE
Q 039519 471 NLQYMYNLNQFP--RLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTI 535 (647)
Q Consensus 471 ~l~~~~~l~~lp--~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 535 (647)
++++| .+..+| .. ++.+++|++|++.+ |.+..++. .....++.+++|+.|++
T Consensus 94 ~ls~N-~i~~~~~~~~-~~~l~~L~~L~l~~---N~l~~~~~--------~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGN-KIKDLSTIEP-LKKLENLKSLDLFN---CEVTNLND--------YRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTS-CCCSHHHHGG-GGGCTTCCEEECTT---CGGGGSTT--------HHHHHHHHCTTCCEETT
T ss_pred ECCCC-cCCChHHHHH-HhhCCCCCEEeCcC---CcccchHH--------HHHHHHHHCCCcccccC
Confidence 99988 667765 43 77888888886665 44422221 11134667777777654
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.28 E-value=7.3e-12 Score=130.04 Aligned_cols=154 Identities=22% Similarity=0.237 Sum_probs=116.8
Q ss_pred ceEEecCCCcccCccccccccEEEEEeecccccccccCC-C-CcceeeEEeccCccccccCc-cccccccCCCeeeecCC
Q 039519 376 NFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSELQ-P-ALTFFLFFNMSNNHLLWKLP-LGISTLVSLEHLDLSST 452 (647)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~~-~-~l~~L~~L~l~~~~~~~~lp-~~~~~L~~L~~L~L~~~ 452 (647)
..+.+.+..++.+|.. -.+.++.|+|++|.++.++... . ++++|++|++++| .+..+| ..|..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC
Confidence 4677777788888753 2457889999999999987764 4 8899999999999 566665 45889999999999999
Q ss_pred CCCcccc-chhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCc
Q 039519 453 AITHLPI-DLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLM 531 (647)
Q Consensus 453 ~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 531 (647)
.++.+|. .+..+++|++|+|++| .+..++...+..+++|+.|++.+ |.+..+|...+ ..+..+++|+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~---N~l~~l~~~~~--------~~~~~l~~L~ 166 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQ---NQISRFPVELI--------KDGNKLPKLM 166 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS---SCCCSCCGGGT--------C----CTTCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCC---CcCCeeCHHHh--------cCcccCCcCC
Confidence 9998875 5788999999999998 67777655588899999996664 66655554332 1235688888
Q ss_pred EEEEEecchhhH
Q 039519 532 AVTITLKRLQAL 543 (647)
Q Consensus 532 ~L~l~~~~~~~l 543 (647)
.|+++.|.++.+
T Consensus 167 ~L~L~~N~l~~l 178 (361)
T 2xot_A 167 LLDLSSNKLKKL 178 (361)
T ss_dssp EEECCSSCCCCC
T ss_pred EEECCCCCCCcc
Confidence 888887776654
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=2.5e-12 Score=145.53 Aligned_cols=82 Identities=22% Similarity=0.376 Sum_probs=42.1
Q ss_pred CCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccchhcCccCcEEeecccccCCcCchhhhcCCCCCc
Q 039519 414 QPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQ 493 (647)
Q Consensus 414 ~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~ 493 (647)
+..++.|+.|+|++| .+..+|..+..+++|++|+|++|.|+.+|..+++|++|++|+|++| .+..+|.. ++.+++|+
T Consensus 220 ~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~ 296 (727)
T 4b8c_D 220 KYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAE-LGSCFQLK 296 (727)
T ss_dssp --CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSS-GGGGTTCS
T ss_pred hccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChh-hcCCCCCC
Confidence 344455555555555 3445555555555555555555555555555555555555555555 34455554 45555555
Q ss_pred EEecc
Q 039519 494 VLRMF 498 (647)
Q Consensus 494 ~L~l~ 498 (647)
+|++.
T Consensus 297 ~L~L~ 301 (727)
T 4b8c_D 297 YFYFF 301 (727)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 55443
No 122
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.25 E-value=2.7e-11 Score=134.55 Aligned_cols=13 Identities=15% Similarity=0.202 Sum_probs=6.3
Q ss_pred hhhcCCCCcccCC
Q 039519 625 LGINRLPHFTKSN 637 (647)
Q Consensus 625 ~~l~~L~~L~~~~ 637 (647)
.++++|+.|+..+
T Consensus 485 ~~~~~L~~L~l~~ 497 (592)
T 3ogk_B 485 RGCPNLQKLEMRG 497 (592)
T ss_dssp TCCTTCCEEEEES
T ss_pred hcCcccCeeeccC
Confidence 4455555554443
No 123
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.23 E-value=2.2e-11 Score=135.32 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=38.2
Q ss_pred ceeeEEeccCccccccCccccccccCCCeeeecCCCCC--ccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEE
Q 039519 418 TFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAIT--HLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVL 495 (647)
Q Consensus 418 ~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L 495 (647)
++|+.|+++++ ....+|..+..+++|++|++++|.++ .++..+..+++|++|+++++-.-..++. +...+++|++|
T Consensus 270 ~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~L 347 (592)
T 3ogk_B 270 RKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEV-LAQYCKQLKRL 347 (592)
T ss_dssp TTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH-HHHHCTTCCEE
T ss_pred ccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHH-HHHhCCCCCEE
Confidence 34444444443 33444555555666666666666554 2223345566666666653211111222 23445666666
Q ss_pred ecc
Q 039519 496 RMF 498 (647)
Q Consensus 496 ~l~ 498 (647)
++.
T Consensus 348 ~L~ 350 (592)
T 3ogk_B 348 RIE 350 (592)
T ss_dssp EEE
T ss_pred Eee
Confidence 665
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.22 E-value=1.3e-11 Score=115.82 Aligned_cols=125 Identities=14% Similarity=0.249 Sum_probs=66.5
Q ss_pred EEEEeecccccccccCCCCcceeeEEeccCccccccCccc--cccccCCCeeeecCCCCCcc-ccchhcCccCcEEeecc
Q 039519 398 RRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLG--ISTLVSLEHLDLSSTAITHL-PIDLQKLVNLKCLNLQY 474 (647)
Q Consensus 398 ~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~--~~~L~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~ 474 (647)
+.+++++|.++.+|..++. .+++|++++| .+..+|.. ++.+++|++|+|++|.++.+ |..++++++|++|+|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 3455556666555554332 4556666666 44444432 55666666666666666644 44556666666666666
Q ss_pred cccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecch
Q 039519 475 MYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRL 540 (647)
Q Consensus 475 ~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 540 (647)
| .+..++...++.+++|++|++.+ |++.. ..+..+..+++|+.|+++.|.+
T Consensus 88 N-~l~~~~~~~~~~l~~L~~L~L~~---N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 88 N-KIKEISNKMFLGLHQLKTLNLYD---NQISC-----------VMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp C-CCCEECSSSSTTCTTCCEEECCS---SCCCE-----------ECTTSSTTCTTCCEEECTTCCB
T ss_pred C-cCCccCHHHhcCCCCCCEEECCC---CcCCe-----------eCHHHhhcCCCCCEEEeCCCCc
Confidence 5 44555544355556666664443 33322 2222344555666666655443
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.22 E-value=3.8e-11 Score=109.89 Aligned_cols=125 Identities=22% Similarity=0.276 Sum_probs=104.0
Q ss_pred cceEEecCCCcc--cCccc-cccccEEEEEeecccccccccCCCCcceeeEEeccCcccccc-CccccccccCCCeeeec
Q 039519 375 ENFLVHAGFGLT--EAPEI-QNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWK-LPLGISTLVSLEHLDLS 450 (647)
Q Consensus 375 ~~~l~~~~~~~~--~~~~~-~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~-lp~~~~~L~~L~~L~L~ 450 (647)
-..+...+..+. .+|.. ..+++|++|++++|.+..+ ..+..+++|++|++++| .+.. +|..+..+++|++|+++
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEEECB
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEEecc
Confidence 344555566665 55554 7889999999999999988 66788999999999999 5555 77777789999999999
Q ss_pred CCCCCccc--cchhcCccCcEEeecccccCCcCch---hhhcCCCCCcEEeccccCC
Q 039519 451 STAITHLP--IDLQKLVNLKCLNLQYMYNLNQFPR---LVISAFSKLQVLRMFDCGG 502 (647)
Q Consensus 451 ~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~---~~i~~l~~L~~L~l~~~~~ 502 (647)
+|.++.+| ..++.+++|++|++++| .+..+|. ..+..+++|++|++.++..
T Consensus 104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 104 GNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp SSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 99999887 78999999999999999 6778886 4488999999998887544
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.21 E-value=3.6e-11 Score=112.75 Aligned_cols=123 Identities=18% Similarity=0.244 Sum_probs=71.9
Q ss_pred EEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccc-cchhcCccCcEEeeccccc
Q 039519 399 RMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLP-IDLQKLVNLKCLNLQYMYN 477 (647)
Q Consensus 399 ~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~ 477 (647)
.+++++|.++.+|..++ +.|++|++++| .+..+|..+..+++|++|+|++|.++.++ ..+.++++|++|+|++| .
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~ 89 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-R 89 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-c
Confidence 45566666666665432 35666666666 55566666666666666666666666555 34666666666666666 5
Q ss_pred CCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecc
Q 039519 478 LNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKR 539 (647)
Q Consensus 478 l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 539 (647)
+..++...+..+++|++|++.+ |.+..++.. .+..+++|+.|+++.|.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~---N~l~~~~~~-----------~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHG---NDISVVPEG-----------AFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCS---SCCCBCCTT-----------TTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCC---CCCCeeChh-----------hhhcCccccEEEeCCCC
Confidence 5666554466666666665443 444333332 24455666666666554
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.21 E-value=2.7e-11 Score=111.83 Aligned_cols=124 Identities=19% Similarity=0.229 Sum_probs=105.9
Q ss_pred cceEEecCCCcccCccccccc-cEEEEEeecccccccccCCCCcceeeEEeccCccccccCcccc-ccccCCCeeeecCC
Q 039519 375 ENFLVHAGFGLTEAPEIQNWR-NVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGI-STLVSLEHLDLSST 452 (647)
Q Consensus 375 ~~~l~~~~~~~~~~~~~~~~~-~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~-~~L~~L~~L~L~~~ 452 (647)
...+...+..++.+|.+..+. +++.|++++|.+..+ ..+..+++|++|++++| .+..+|+.+ +.+++|++|++++|
T Consensus 21 L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 21 DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN 98 (176)
T ss_dssp CEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC
T ss_pred ceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCC
Confidence 345666777777778777766 999999999999998 56788999999999999 777888665 89999999999999
Q ss_pred CCCcccc--chhcCccCcEEeecccccCCcCchh---hhcCCCCCcEEeccccC
Q 039519 453 AITHLPI--DLQKLVNLKCLNLQYMYNLNQFPRL---VISAFSKLQVLRMFDCG 501 (647)
Q Consensus 453 ~l~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~---~i~~l~~L~~L~l~~~~ 501 (647)
.++.+|. .++.+++|++|++++| .+..+|.. .++.+++|+.|++.++.
T Consensus 99 ~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 99 SLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999997 8999999999999999 67788874 47899999999777543
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.20 E-value=5.1e-11 Score=111.72 Aligned_cols=121 Identities=21% Similarity=0.237 Sum_probs=104.8
Q ss_pred ceEEecCCCcccCccccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCc-cccccccCCCeeeecCCCC
Q 039519 376 NFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLP-LGISTLVSLEHLDLSSTAI 454 (647)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~L~~L~~L~L~~~~l 454 (647)
..+.+.+.+++.+|.. -.++++.|++++|.++.+|..+.++++|++|++++| .+..++ ..|..+++|++|+|++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCcc
Confidence 4677778888888763 247999999999999999988899999999999999 666665 4689999999999999999
Q ss_pred Ccccc-chhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccc
Q 039519 455 THLPI-DLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFD 499 (647)
Q Consensus 455 ~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 499 (647)
+.+|. .+..+++|++|+|++| .+..+|.+.+..+++|+.|++.+
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCS
T ss_pred CEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCC
Confidence 98874 6899999999999999 78899987788899999997764
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.20 E-value=2.9e-11 Score=108.27 Aligned_cols=121 Identities=21% Similarity=0.247 Sum_probs=100.8
Q ss_pred cceEEecCCCcc--cCcc-ccccccEEEEEeecccccccccCCCCcceeeEEeccCcccccc-CccccccccCCCeeeec
Q 039519 375 ENFLVHAGFGLT--EAPE-IQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWK-LPLGISTLVSLEHLDLS 450 (647)
Q Consensus 375 ~~~l~~~~~~~~--~~~~-~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~-lp~~~~~L~~L~~L~L~ 450 (647)
-+.+...+..+. .+|. +..+++++.|++++|.+..+ ..+..+++|++|++++| .+.. +|..++.+++|++|+++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEEECT
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEEECC
Confidence 344555566665 4444 47789999999999999988 66688999999999999 5555 88777889999999999
Q ss_pred CCCCCccc--cchhcCccCcEEeecccccCCcCch---hhhcCCCCCcEEecc
Q 039519 451 STAITHLP--IDLQKLVNLKCLNLQYMYNLNQFPR---LVISAFSKLQVLRMF 498 (647)
Q Consensus 451 ~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~---~~i~~l~~L~~L~l~ 498 (647)
+|.++.+| ..++.+++|++|++++| .+..+|. ..++.+++|+.|++.
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 99999875 78999999999999999 6778876 458899999999765
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.16 E-value=4.2e-11 Score=131.37 Aligned_cols=123 Identities=20% Similarity=0.227 Sum_probs=87.7
Q ss_pred cEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccchhcCccCcEEeeccc
Q 039519 396 NVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLVNLKCLNLQYM 475 (647)
Q Consensus 396 ~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~ 475 (647)
.++.|++++|.++.+|. +..+++|+.|++++| .+..+|..++.|++|++|+|++|.++.+| .++++++|++|+|++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence 46778888888888776 677778888888888 66678888888888888888888888877 7888888888888887
Q ss_pred ccCCcC--chhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEE
Q 039519 476 YNLNQF--PRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVT 534 (647)
Q Consensus 476 ~~l~~l--p~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 534 (647)
.+..+ |.. ++.+++|+.|++.+ |.+.++|+. ...-+..+++|+.|+
T Consensus 519 -~l~~~~~p~~-l~~l~~L~~L~L~~---N~l~~~~~~--------~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 519 -RLQQSAAIQP-LVSCPRLVLLNLQG---NSLCQEEGI--------QERLAEMLPSVSSIL 566 (567)
T ss_dssp -CCCSSSTTGG-GGGCTTCCEEECTT---SGGGGSSSC--------TTHHHHHCTTCSEEE
T ss_pred -CCCCCCCcHH-HhcCCCCCEEEecC---CcCCCCccH--------HHHHHHHCcccCccC
Confidence 66666 555 77788888885553 555444332 112233466666664
No 131
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.15 E-value=3.3e-10 Score=116.80 Aligned_cols=263 Identities=13% Similarity=0.019 Sum_probs=147.9
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC------CCCcceEEEEEEcCcc------CHHHHHHHHHHHhCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA------PNDFDVVIWMVVSKDL------QLEKIQERIGRRIGFL 143 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT------~~~F~~~~wv~~s~~~------~~~~~~~~i~~~l~~~ 143 (647)
+.+|||+.+++++.+.+..+ +++.|+|++|+||| ..... .+|+.+.... +...+.+.+...+...
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 88 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERP-GILIDCRELYAERGHITREELIKELQSTISPF 88 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSS-EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSH
T ss_pred HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcC-cEEEEeecccccccCCCHHHHHHHHHHHHHHH
Confidence 56899999999999988764 79999999999999 11122 6777765432 5566666666655320
Q ss_pred --------------CcC--CCCCCHHHHHHHHHHHhcc-CCeeEEEecCCCccc---------cccccCCCCCCCCCcEE
Q 039519 144 --------------DES--WKNGSLEDKASDIFRILSK-KKLLLLLDDIWERVD---------LTKVGVPFPDPENKSRI 197 (647)
Q Consensus 144 --------------~~~--~~~~~~~~~~~~l~~~l~~-~r~LlVlDdv~~~~~---------~~~l~~~~~~~~~gs~I 197 (647)
... ....+..+....+.+.... ++++||+||++.... +..+..... ...+.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~-~~~~~~~ 167 (350)
T 2qen_A 89 QKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD-SLPNLKI 167 (350)
T ss_dssp HHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH-HCTTEEE
T ss_pred HhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH-hcCCeEE
Confidence 000 0123556666667666643 499999999987432 122211111 1146789
Q ss_pred EEecCchHHhhhc------------ccceeEec------------cccccC--CCChHHHHHHHHHHhcCCchhHHHHhh
Q 039519 198 DFTTRFLEICSAM------------QAHEFLKV------------EDVLKN--HPNIPELARSVAQECAGLPLALITIGR 251 (647)
Q Consensus 198 ivTTR~~~v~~~~------------~~~~~~~~------------~~~~~~--~~~~~~~~~~i~~~c~glPLai~~~g~ 251 (647)
|+|++...+...+ .....+.+ ...+.. ..--++.+.++++.++|.|+++..++.
T Consensus 168 il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~l~~~~~ 247 (350)
T 2qen_A 168 ILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGWLVVFGV 247 (350)
T ss_dssp EEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9998876542211 01123444 111111 112346788999999999999999887
Q ss_pred HhhcCCCHhHHHHHHHHHhhcccCCCCCCcchhhHH-HHhhcCCCchhhhhHHhhhcCCCCCCcccHHHHHHHhhhcCCc
Q 039519 252 VMACKKTPQEWHYAIQVLRISASEFPGMGKEVYPLL-KYSYDSLPDETIRSCLLYCGLFPEDYRTRKSELIDCWIGEGFL 330 (647)
Q Consensus 252 ~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l-~~sy~~L~~~~~k~~fl~~a~fp~~~~i~~~~Li~~w~a~g~~ 330 (647)
.+....+...+.. .+..... ..+...+ .+.++ ++ ..+..+..+|. + ..+...+.....+.. -
T Consensus 248 ~~~~~~~~~~~~~---~~~~~~~------~~~~~~l~~l~~~--~~-~~~~~l~~la~---g-~~~~~~l~~~~~~~~-~ 310 (350)
T 2qen_A 248 EYLRNGDFGRAMK---RTLEVAK------GLIMGELEELRRR--SP-RYVDILRAIAL---G-YNRWSLIRDYLAVKG-T 310 (350)
T ss_dssp HHHHHCCHHHHHH---HHHHHHH------HHHHHHHHHHHHH--CH-HHHHHHHHHHT---T-CCSHHHHHHHHHHTT-C
T ss_pred HHhccccHhHHHH---HHHHHHH------HHHHHHHHHHHhC--Ch-hHHHHHHHHHh---C-CCCHHHHHHHHHHHh-C
Confidence 6532123322221 1111000 0111111 11222 55 78888888887 2 234445444332210 0
Q ss_pred cccCccchHHHHHHHHHHHHHhccccccCCCeeEE
Q 039519 331 DQYDRSGAYDEGYYIIGILLHACLLEEEWGDIGEE 365 (647)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~m 365 (647)
. .......++++.|.+.+++... ...|++
T Consensus 311 -~----~~~~~~~~~l~~L~~~gli~~~-~~~y~~ 339 (350)
T 2qen_A 311 -K----IPEPRLYALLENLKKMNWIVEE-DNTYKI 339 (350)
T ss_dssp -C----CCHHHHHHHHHHHHHTTSEEEE-TTEEEE
T ss_pred -C----CCHHHHHHHHHHHHhCCCEEec-CCEEEE
Confidence 0 1124466789999999999764 234544
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.13 E-value=1.2e-10 Score=109.26 Aligned_cols=121 Identities=19% Similarity=0.194 Sum_probs=100.6
Q ss_pred ceEEecCCCcccCccccccccEEEEEeecccccccccC--CCCcceeeEEeccCccccccC-ccccccccCCCeeeecCC
Q 039519 376 NFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSEL--QPALTFFLFFNMSNNHLLWKL-PLGISTLVSLEHLDLSST 452 (647)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~--~~~l~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~L~L~~~ 452 (647)
..+...+.+++.+|... ..+++.|++++|.+..++.. +..+++|++|++++| .+..+ |..+..+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC
Confidence 45777788888887632 35999999999999998764 588999999999999 55554 778999999999999999
Q ss_pred CCCcccc-chhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccc
Q 039519 453 AITHLPI-DLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFD 499 (647)
Q Consensus 453 ~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 499 (647)
.++.+|. .++.+++|++|++++| .+..+++..+..+++|++|++.+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTT
T ss_pred cCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCC
Confidence 9997765 4889999999999999 66666444488999999997765
No 133
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.13 E-value=7.4e-10 Score=117.07 Aligned_cols=267 Identities=13% Similarity=0.040 Sum_probs=153.0
Q ss_pred CCcccchHHHHHHHHHh-hh------CCceEEEE--EccCccCCC----------CC-----Ccc-eEEEEEEcCccCHH
Q 039519 76 EPTVGLESTFDKVRRCL-RE------EQVGIIGL--YGMGGLLGA----------PN-----DFD-VVIWMVVSKDLQLE 130 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L-~~------~~~~vi~I--~G~gGiGKT----------~~-----~F~-~~~wv~~s~~~~~~ 130 (647)
..++||+.+++++.+.+ .. ...+.+.| +|++|+||| .. .|+ .++|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67899999999999988 42 24456666 999999999 11 122 35677766777889
Q ss_pred HHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHhc--cCCeeEEEecCCCcc--------ccccccCCC---CCCC--CCc
Q 039519 131 KIQERIGRRIGFLDESWKNGSLEDKASDIFRILS--KKKLLLLLDDIWERV--------DLTKVGVPF---PDPE--NKS 195 (647)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~--------~~~~l~~~~---~~~~--~gs 195 (647)
.+...++.+++.... ....+..+....+.+.+. +++++|||||++... .+..+...+ +..+ .+.
T Consensus 102 ~~~~~l~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQ-VRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHTCCCC-CTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHhCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 999999999875421 112345666777777775 679999999998632 222221111 1112 345
Q ss_pred EEEEecCchHHhhhcc---------cceeEec----------------cccccCCCChHHHHHHHHHHhc------CCch
Q 039519 196 RIDFTTRFLEICSAMQ---------AHEFLKV----------------EDVLKNHPNIPELARSVAQECA------GLPL 244 (647)
Q Consensus 196 ~IivTTR~~~v~~~~~---------~~~~~~~----------------~~~~~~~~~~~~~~~~i~~~c~------glPL 244 (647)
.||+||+...+...+. ....+.+ ...+....--++.+..|++.++ |.|.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~ 260 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSAR 260 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHH
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHH
Confidence 5888887655432111 1112444 0011111223567888999999 9996
Q ss_pred hHHHHhhHh---h---cC--CCHhHHHHHHHHHhhcccCCCCCCcchhhHHHHhhcCCCchhhhhHHhhhcCCC--CCCc
Q 039519 245 ALITIGRVM---A---CK--KTPQEWHYAIQVLRISASEFPGMGKEVYPLLKYSYDSLPDETIRSCLLYCGLFP--EDYR 314 (647)
Q Consensus 245 ai~~~g~~l---~---~~--~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~~fl~~a~fp--~~~~ 314 (647)
.+..+.... + +. -+.+.+..++..... ...+.-++..||+ ..+.++..++.+. .+..
T Consensus 261 ~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~~-~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 261 RAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALSI-HELIILRLIAEATLGGMEW 327 (412)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCH-HHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCC
Confidence 555443321 1 10 123333333321110 2234456778998 8888888888654 2334
Q ss_pred ccHHHHHHHhhh-c-CCccccCccchHHHHHHHHHHHHHhcccccc
Q 039519 315 TRKSELIDCWIG-E-GFLDQYDRSGAYDEGYYIIGILLHACLLEEE 358 (647)
Q Consensus 315 i~~~~Li~~w~a-~-g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 358 (647)
++...+...+.. . ...... .........+++.|.+.+++...
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMYNVK--PRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp BCHHHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHHhCCCEEee
Confidence 555555444321 1 001000 01124456789999999999764
No 134
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.12 E-value=1.6e-10 Score=128.28 Aligned_cols=81 Identities=21% Similarity=0.276 Sum_probs=44.4
Q ss_pred ccccEEEEEeecccccc-----cccCCCCcceeeEEeccCcc-cc--ccCccccccccCCCeeeecCC-CCCccccchhc
Q 039519 393 NWRNVRRMSLMKNKIEN-----LSELQPALTFFLFFNMSNNH-LL--WKLPLGISTLVSLEHLDLSST-AITHLPIDLQK 463 (647)
Q Consensus 393 ~~~~l~~L~l~~n~i~~-----l~~~~~~l~~L~~L~l~~~~-~~--~~lp~~~~~L~~L~~L~L~~~-~l~~lp~~~~~ 463 (647)
.+++|++|++++|.+.. ++.....+++|+.|++++|. .+ ..++.-+..+++|++|++++| .+..+|..+..
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~ 233 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR 233 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc
Confidence 45667777777666543 22222455667777777662 01 111111234567777777766 44455555566
Q ss_pred CccCcEEeec
Q 039519 464 LVNLKCLNLQ 473 (647)
Q Consensus 464 l~~L~~L~l~ 473 (647)
+++|++|++.
T Consensus 234 ~~~L~~L~l~ 243 (594)
T 2p1m_B 234 APQLEELGTG 243 (594)
T ss_dssp CTTCSEEECS
T ss_pred CCcceEcccc
Confidence 6666666543
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.12 E-value=2.4e-10 Score=105.54 Aligned_cols=118 Identities=27% Similarity=0.350 Sum_probs=65.6
Q ss_pred EEecCCCcccCccccccccEEEEEeecccccccccC-CCCcceeeEEeccCccccccCccc-cccccCCCeeeecCCCCC
Q 039519 378 LVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLSEL-QPALTFFLFFNMSNNHLLWKLPLG-ISTLVSLEHLDLSSTAIT 455 (647)
Q Consensus 378 l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~~~-~~~l~~L~~L~l~~~~~~~~lp~~-~~~L~~L~~L~L~~~~l~ 455 (647)
+.+.+.+++.+|. ...++++.|++++|.+..++.. +..+++|++|++++| .+..+|.. +..+++|++|++++|.++
T Consensus 12 l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 89 (177)
T 2o6r_A 12 IRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQ 89 (177)
T ss_dssp EECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCcc
Confidence 4444445555542 2234666666666666655543 255566666666666 44444433 456666666666666666
Q ss_pred ccccc-hhcCccCcEEeecccccCCcCchhhhcCCCCCcEEecc
Q 039519 456 HLPID-LQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMF 498 (647)
Q Consensus 456 ~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~ 498 (647)
.+|.. ++.+++|++|++++| .+..+|...+..+++|++|++.
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 90 SLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred ccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEec
Confidence 55543 455666666666665 4555655544555566665444
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.11 E-value=5.8e-11 Score=134.37 Aligned_cols=113 Identities=24% Similarity=0.265 Sum_probs=99.6
Q ss_pred cccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccchhcCccCcE
Q 039519 390 EIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLVNLKC 469 (647)
Q Consensus 390 ~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~L~~ 469 (647)
.+..++.|+.|+|++|.+..+|..+.++++|++|+|++| .+..+|..|+.|++|++|+|++|.|+.+|..+++|++|++
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred hhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 466778999999999999999988888999999999999 6779999999999999999999999999999999999999
Q ss_pred EeecccccCCcCchhhhcCCCCCcEEeccccCCCccccc
Q 039519 470 LNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERL 508 (647)
Q Consensus 470 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~ 508 (647)
|+|++| .+..+|.+ ++.+++|++|++.+ |.+.+.
T Consensus 298 L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~---N~l~~~ 331 (727)
T 4b8c_D 298 FYFFDN-MVTTLPWE-FGNLCNLQFLGVEG---NPLEKQ 331 (727)
T ss_dssp EECCSS-CCCCCCSS-TTSCTTCCCEECTT---SCCCSH
T ss_pred EECCCC-CCCccChh-hhcCCCccEEeCCC---CccCCC
Confidence 999999 78899997 89999999997664 565433
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.06 E-value=1.2e-11 Score=116.71 Aligned_cols=63 Identities=25% Similarity=0.315 Sum_probs=33.2
Q ss_pred CccccccccCCCeeeecCCCCCccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccc
Q 039519 434 LPLGISTLVSLEHLDLSSTAITHLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFD 499 (647)
Q Consensus 434 lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 499 (647)
+|..++.+++|++|++++|.++.+| .++.+++|++|++++| .+..+|.. +..+++|+.|++.+
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~-~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENL-DAVADTLEELWISY 102 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSH-HHHHHHCSEEEEEE
T ss_pred hhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-Ccccccch-hhcCCcCCEEECcC
Confidence 3335555555555555555555555 5555555555555555 44455543 44445555554443
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.05 E-value=5.8e-10 Score=102.92 Aligned_cols=127 Identities=20% Similarity=0.274 Sum_probs=102.7
Q ss_pred EEEEEeecccccccccCCCCcceeeEEeccCccccccCccc-cccccCCCeeeecCCCCCccccc-hhcCccCcEEeecc
Q 039519 397 VRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPLG-ISTLVSLEHLDLSSTAITHLPID-LQKLVNLKCLNLQY 474 (647)
Q Consensus 397 l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~L~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~ 474 (647)
.+.+++.++++..+|...+ +.|+.|++++| .+..+|.. ++.+++|++|++++|.++.+|.. ++.+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 3568888999998886543 68999999999 56676654 68999999999999999988865 68999999999999
Q ss_pred cccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchh
Q 039519 475 MYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQ 541 (647)
Q Consensus 475 ~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 541 (647)
| .+..+|...++.+++|++|++.+ |.+..++.. .+..+++|+.|+++.|.+.
T Consensus 86 N-~l~~~~~~~~~~l~~L~~L~l~~---N~l~~~~~~-----------~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 N-KLQSLPNGVFDKLTQLKELALDT---NQLKSVPDG-----------IFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCS---SCCSCCCTT-----------TTTTCTTCCEEECCSSCBC
T ss_pred C-CccccCHHHhhCCcccCEEECcC---CcceEeCHH-----------HhcCCcccCEEEecCCCee
Confidence 9 78888887678899999997765 555444432 2567899999999988754
No 139
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.04 E-value=2.4e-09 Score=110.59 Aligned_cols=262 Identities=13% Similarity=0.066 Sum_probs=138.9
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC------CCCc-ceEEEEEEcCc-----cCHHHHHHHHHHHhC--
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA------PNDF-DVVIWMVVSKD-----LQLEKIQERIGRRIG-- 141 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT------~~~F-~~~~wv~~s~~-----~~~~~~~~~i~~~l~-- 141 (647)
+.+|||+.+++++.+ +.. +++.|+|++|+||| .... ...+|+.+... .+...+...+...+.
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 88 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKL 88 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHHHHH
Confidence 568999999999999 755 69999999999999 1111 23678887642 244444444444331
Q ss_pred ------------CC------C--cCC-----CCCCHHHHHHHHHHHhccCCeeEEEecCCCcc-----ccccccCCCCCC
Q 039519 142 ------------FL------D--ESW-----KNGSLEDKASDIFRILSKKKLLLLLDDIWERV-----DLTKVGVPFPDP 191 (647)
Q Consensus 142 ------------~~------~--~~~-----~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~-----~~~~l~~~~~~~ 191 (647)
.. . ... ......+....+.+.-+ ++++||+||++..+ ++..+...+...
T Consensus 89 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~ 167 (357)
T 2fna_A 89 VKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYDN 167 (357)
T ss_dssp HHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHHH
T ss_pred hhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHHc
Confidence 00 0 000 12234444444444322 49999999997632 221111111111
Q ss_pred CCCcEEEEecCchHHhhhc----------c--cceeEec------------ccccc-CCCChHHHHHHHHHHhcCCchhH
Q 039519 192 ENKSRIDFTTRFLEICSAM----------Q--AHEFLKV------------EDVLK-NHPNIPELARSVAQECAGLPLAL 246 (647)
Q Consensus 192 ~~gs~IivTTR~~~v~~~~----------~--~~~~~~~------------~~~~~-~~~~~~~~~~~i~~~c~glPLai 246 (647)
..+.++|+|++.......+ . ....+.+ ...+. ........ ..|++.++|.|+++
T Consensus 168 ~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~-~~i~~~t~G~P~~l 246 (357)
T 2fna_A 168 LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY-EVVYEKIGGIPGWL 246 (357)
T ss_dssp CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH-HHHHHHHCSCHHHH
T ss_pred CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH-HHHHHHhCCCHHHH
Confidence 2367899999976542211 0 1123444 01100 00011112 78999999999999
Q ss_pred HHHhhHhhcCCCHhHHHHHHHHHhhcccCCCCCCcchhhHHH-Hhhc--CCCchhhhhHHhhhcCCCCCCcccHHHHHHH
Q 039519 247 ITIGRVMACKKTPQEWHYAIQVLRISASEFPGMGKEVYPLLK-YSYD--SLPDETIRSCLLYCGLFPEDYRTRKSELIDC 323 (647)
Q Consensus 247 ~~~g~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~~k~~fl~~a~fp~~~~i~~~~Li~~ 323 (647)
..++..+....+...|.. .+..... ..+...+. +.++ .+++ ..+..+..+|+ +. +...+...
T Consensus 247 ~~~~~~~~~~~~~~~~~~---~~~~~~~------~~~~~~l~~~~~~~~~l~~-~~~~~l~~la~---g~--~~~~l~~~ 311 (357)
T 2fna_A 247 TYFGFIYLDNKNLDFAIN---QTLEYAK------KLILKEFENFLHGREIARK-RYLNIMRTLSK---CG--KWSDVKRA 311 (357)
T ss_dssp HHHHHHHHHHCCHHHHHH---HHHHHHH------HHHHHHHHHHHTTCGGGHH-HHHHHHHHHTT---CB--CHHHHHHH
T ss_pred HHHHHHHccccchHHHHH---HHHHHHH------HHHHHHHHHHhhccccccH-HHHHHHHHHHc---CC--CHHHHHHH
Confidence 999887653234444432 1111000 01111111 1111 5677 78889988887 22 34444322
Q ss_pred hh-hcCCccccCccchHHHHHHHHHHHHHhccccccCCCeeEE
Q 039519 324 WI-GEGFLDQYDRSGAYDEGYYIIGILLHACLLEEEWGDIGEE 365 (647)
Q Consensus 324 w~-a~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~m 365 (647)
.. ..|. ........++++.|++.+++.... ..|++
T Consensus 312 ~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~-~~y~f 347 (357)
T 2fna_A 312 LELEEGI------EISDSEIYNYLTQLTKHSWIIKEG-EKYCP 347 (357)
T ss_dssp HHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS-SCEEE
T ss_pred HHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC-CEEEe
Confidence 11 1121 011234567899999999997653 34544
No 140
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.04 E-value=1.3e-10 Score=129.19 Aligned_cols=109 Identities=11% Similarity=0.026 Sum_probs=59.0
Q ss_pred HHHhh-CCCCCcEEEEEe------cchhh---HHHHhhhhhhhhccceeeeec-------------cCCCceEEEec---
Q 039519 521 VEELI-GMKYLMAVTITL------KRLQA---LQELLISQELQRCTQFLFLRC-------------FNDSKSLDIFC--- 574 (647)
Q Consensus 521 ~~~l~-~l~~L~~L~l~~------~~~~~---l~~l~~~~~~~~~l~~l~L~~-------------~~~L~~L~l~~--- 574 (647)
+..+. .+++|+.|++.. +.++. -..+.......++|+.|++++ +++|+.|++.+
T Consensus 389 ~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i 468 (594)
T 2p1m_B 389 LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGD 468 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCS
T ss_pred HHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCC
Confidence 33443 577888888873 22221 011111122334677777654 55677777744
Q ss_pred --------ccccCCccEEEEcCCCCCCCCh--hhccccCCceEEeecccccccccchhhh-hhhcCCC
Q 039519 575 --------LACLHNLNKLYVAGCKHLEDFQ--MIIQRSSLSVHNLFINKNYIHTNQLSIL-LGINRLP 631 (647)
Q Consensus 575 --------~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~~~~~~l-~~l~~L~ 631 (647)
...+++|++|+|++|....... ....+++|++|++++|+. ....+..+ ..+|+|.
T Consensus 469 ~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~--~~~~~~~l~~~lp~l~ 534 (594)
T 2p1m_B 469 SDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV--SFGACKLLGQKMPKLN 534 (594)
T ss_dssp SHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC--BHHHHHHHHHHCTTEE
T ss_pred cHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC--CHHHHHHHHHhCCCCE
Confidence 1456778888888776522221 234577788888887642 33333333 3445553
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.03 E-value=7.4e-12 Score=118.11 Aligned_cols=79 Identities=22% Similarity=0.229 Sum_probs=37.0
Q ss_pred CCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcE
Q 039519 415 PALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQV 494 (647)
Q Consensus 415 ~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~ 494 (647)
..+++|++|++++| .+..+| .+..+++|++|++++|.++.+|..+..+++|++|++++| .+..+|. ++.+++|+.
T Consensus 45 ~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~~--~~~l~~L~~ 119 (198)
T 1ds9_A 45 STLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLSG--IEKLVNLRV 119 (198)
T ss_dssp HHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHHH--HHHHHHSSE
T ss_pred hcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCCc--cccCCCCCE
Confidence 34444444555444 333444 444445555555555544444444444444555555544 3444442 444444444
Q ss_pred Eecc
Q 039519 495 LRMF 498 (647)
Q Consensus 495 L~l~ 498 (647)
|++.
T Consensus 120 L~l~ 123 (198)
T 1ds9_A 120 LYMS 123 (198)
T ss_dssp EEES
T ss_pred EECC
Confidence 4443
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.00 E-value=9.4e-10 Score=101.13 Aligned_cols=98 Identities=23% Similarity=0.332 Sum_probs=72.8
Q ss_pred EEEEeecccccccccCCCCcceeeEEeccCccccccC-ccccccccCCCeeeecCCCCCccccc-hhcCccCcEEeeccc
Q 039519 398 RRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKL-PLGISTLVSLEHLDLSSTAITHLPID-LQKLVNLKCLNLQYM 475 (647)
Q Consensus 398 ~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~ 475 (647)
+.+++++|.+..+|..++ +.|++|++++| .+..+ |..++.+++|++|+|++|.++.+|.. +.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 567778888877776554 67788888888 45555 55677888888888888888887765 467888888888887
Q ss_pred ccCCcCchhhhcCCCCCcEEeccc
Q 039519 476 YNLNQFPRLVISAFSKLQVLRMFD 499 (647)
Q Consensus 476 ~~l~~lp~~~i~~l~~L~~L~l~~ 499 (647)
.+..+|.+.+..+++|++|++.+
T Consensus 92 -~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 92 -HLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp -CCCCCCTTTTTTCTTCSEEECCS
T ss_pred -ccceeCHHHhccccCCCEEEeCC
Confidence 67777776577777888776654
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.97 E-value=1.4e-09 Score=99.64 Aligned_cols=98 Identities=23% Similarity=0.337 Sum_probs=69.3
Q ss_pred EEEEeecccccccccCCCCcceeeEEeccCccccccC-ccccccccCCCeeeecCCCCCccccc-hhcCccCcEEeeccc
Q 039519 398 RRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKL-PLGISTLVSLEHLDLSSTAITHLPID-LQKLVNLKCLNLQYM 475 (647)
Q Consensus 398 ~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~ 475 (647)
+.+++++|.++.+|..++ +.|++|++++| .+..+ |..|..+++|++|+|++|.++.+|.. +..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 467777777777776543 56777888877 55555 55577778888888888887777754 467778888888777
Q ss_pred ccCCcCchhhhcCCCCCcEEeccc
Q 039519 476 YNLNQFPRLVISAFSKLQVLRMFD 499 (647)
Q Consensus 476 ~~l~~lp~~~i~~l~~L~~L~l~~ 499 (647)
.+..+|.+.+..+++|++|++.+
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 89 -QLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCS
T ss_pred -ccCEeCHHHhcCCCCCCEEEeCC
Confidence 66777765567777777776554
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.91 E-value=2.8e-09 Score=97.95 Aligned_cols=106 Identities=21% Similarity=0.269 Sum_probs=89.4
Q ss_pred cceEEecCCCcccCccccccccEEEEEeecccccccc-cCCCCcceeeEEeccCccccccCccc-cccccCCCeeeecCC
Q 039519 375 ENFLVHAGFGLTEAPEIQNWRNVRRMSLMKNKIENLS-ELQPALTFFLFFNMSNNHLLWKLPLG-ISTLVSLEHLDLSST 452 (647)
Q Consensus 375 ~~~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~L~~L~~L~L~~~ 452 (647)
...+...+..+..+|.-. .+++++|++++|.+..++ ..+.++++|++|+|++| .+..+|.. +..+++|++|+|++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 356777888888887633 389999999999999975 45689999999999999 77788876 589999999999999
Q ss_pred CCCccccc-hhcCccCcEEeecccccCCcCch
Q 039519 453 AITHLPID-LQKLVNLKCLNLQYMYNLNQFPR 483 (647)
Q Consensus 453 ~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~ 483 (647)
.++.+|.. +..+++|++|++++| .+.-.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N-~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNN-PWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSS-CBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCC-Ccccccc
Confidence 99999875 889999999999998 4555554
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.86 E-value=2.5e-09 Score=109.35 Aligned_cols=99 Identities=14% Similarity=0.126 Sum_probs=65.2
Q ss_pred cccEEEEEeecccccccccCCCCcceeeEEeccCccccccCcc-cccc--------ccCCCeeeecCCCCCcccc-chhc
Q 039519 394 WRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLPL-GIST--------LVSLEHLDLSSTAITHLPI-DLQK 463 (647)
Q Consensus 394 ~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~--------L~~L~~L~L~~~~l~~lp~-~~~~ 463 (647)
+++|+.|+|++|++.........++.++.+.+..+ .+|. .|.+ +.+|+.|+|.. .++.++. .|.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhc
Confidence 56788888888887722111122222444554444 2332 3556 89999999988 8888874 5788
Q ss_pred CccCcEEeecccccCCcCchhhhcCCCCCcEEecc
Q 039519 464 LVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMF 498 (647)
Q Consensus 464 l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~ 498 (647)
|++|+.+++.+| .+..++...+..+.++..+...
T Consensus 123 ~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~ 156 (329)
T 3sb4_A 123 CDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLG 156 (329)
T ss_dssp CTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTT
T ss_pred CcccceEEcCCC-CccccchhhhcCCCceEEecCc
Confidence 999999999987 6677887777776666665443
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.84 E-value=5.1e-09 Score=95.81 Aligned_cols=105 Identities=22% Similarity=0.276 Sum_probs=87.6
Q ss_pred eeeEEeccCccccccCccccccccCCCeeeecCCCCCcc-ccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEec
Q 039519 419 FFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHL-PIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRM 497 (647)
Q Consensus 419 ~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l 497 (647)
..+.+++++| .+..+|..+. .+|++|+|++|.++.+ |..++.+++|++|+|++| .+..+|.+.+..+++|++|++
T Consensus 10 ~~~~l~~s~n-~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGK-SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCC-CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEEC
Confidence 3578999999 7888998774 8999999999999988 567899999999999999 789999886789999999977
Q ss_pred cccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchh
Q 039519 498 FDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQ 541 (647)
Q Consensus 498 ~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 541 (647)
.+ |++..+++. .+..+++|+.|+++.|.+.
T Consensus 86 ~~---N~l~~~~~~-----------~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 86 ND---NQLKSIPRG-----------AFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CS---SCCCCCCTT-----------TTTTCTTCCEEECCSSCBC
T ss_pred CC---CccCEeCHH-----------HhcCCCCCCEEEeCCCCCC
Confidence 64 666554443 3678899999999988653
No 147
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.78 E-value=2.7e-07 Score=96.25 Aligned_cols=256 Identities=13% Similarity=-0.021 Sum_probs=149.1
Q ss_pred CCcccchHHHHHHHHHhhh----CCceEEEEEccCccCCC-------CC---C--------cceEEEEEEcCcc-CHHHH
Q 039519 76 EPTVGLESTFDKVRRCLRE----EQVGIIGLYGMGGLLGA-------PN---D--------FDVVIWMVVSKDL-QLEKI 132 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~----~~~~vi~I~G~gGiGKT-------~~---~--------F~~~~wv~~s~~~-~~~~~ 132 (647)
..++||+++++++.+.+.. +..+.+.|+|++|+||| .. . ....+|+..+... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6789999999999987764 34678999999999999 11 1 3356777776666 78888
Q ss_pred HHHHHHHhCCCCcCCCCCCHHHHHHHHHHHhccCCeeEEEecCCCccc-------cccccCCCCCCCCCcEEEEecCchH
Q 039519 133 QERIGRRIGFLDESWKNGSLEDKASDIFRILSKKKLLLLLDDIWERVD-------LTKVGVPFPDPENKSRIDFTTRFLE 205 (647)
Q Consensus 133 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~-------~~~l~~~~~~~~~gs~IivTTR~~~ 205 (647)
...++..+..........+..+....+.+.+..++.+|||||++.... +..+.... .+.+||+||+...
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~~~ 175 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSSTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECCCc
Confidence 888888873222111233456677788888887777999999986321 22222221 5778888888653
Q ss_pred H--------hhhcccceeEec----------------cccccCCCChHHHHHHHHHHhc---CCch-hHHHHhhHh--h-
Q 039519 206 I--------CSAMQAHEFLKV----------------EDVLKNHPNIPELARSVAQECA---GLPL-ALITIGRVM--A- 254 (647)
Q Consensus 206 v--------~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~i~~~c~---glPL-ai~~~g~~l--~- 254 (647)
. ...++. .+.+ ...+....--++..+.+++.++ |.|- |+..+-... +
T Consensus 176 ~~~~l~~~l~sr~~~--~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 176 VRDYMEPRVLSSLGP--SVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTTSCHHHHHTCCC--EEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred hHhhhCHHHHhcCCC--eEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 2 111111 3333 0011111222456677777777 7665 333322221 1
Q ss_pred --cCCCHhHHHHHHHHHhhcccCCCCCCcchhhHHHHhhcCCCchhhhhHHhhhcCCCCC-CcccHHHHHHHhhhcCCcc
Q 039519 255 --CKKTPQEWHYAIQVLRISASEFPGMGKEVYPLLKYSYDSLPDETIRSCLLYCGLFPED-YRTRKSELIDCWIGEGFLD 331 (647)
Q Consensus 255 --~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~~fl~~a~fp~~-~~i~~~~Li~~w~a~g~~~ 331 (647)
..-+.+.+..+++... ...+..+++.|++ +.+..+..++. ... ..+. ......--..| ..
T Consensus 254 ~~~~i~~~~v~~~~~~~~-------------~~~~~~~~~~l~~-~~~~~l~al~~-~~~~~~~~-~~~~~~~~~~g-~~ 316 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDYE-------------QERLIEAVKALPF-HYKLALRSLIE-SEDVMSAH-KMYTDLCNKFK-QK 316 (384)
T ss_dssp SSSCCCHHHHHHHHHHHH-------------HHHHHHHHHSSCH-HHHHHHHHHHT-CCBHHHHH-HHHHHHHHHTT-CC
T ss_pred CCCccCHHHHHHHHHHHh-------------cchHHHHHHcCCH-HHHHHHHHHHH-hcccChHH-HHHHHHHHHcC-CC
Confidence 1245666666554332 2345566788887 67777666665 211 1111 11111111222 11
Q ss_pred ccCccchHHHHHHHHHHHHHhcccccc
Q 039519 332 QYDRSGAYDEGYYIIGILLHACLLEEE 358 (647)
Q Consensus 332 ~~~~~~~~~~~~~~~~~L~~~~ll~~~ 358 (647)
........++++.|.+++++...
T Consensus 317 ----~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 317 ----PLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ----CCCHHHHHHHHHHHHhCCCEEEE
Confidence 11234567789999999999763
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=1.1e-08 Score=104.60 Aligned_cols=108 Identities=10% Similarity=0.137 Sum_probs=68.9
Q ss_pred cccEEEEEeeccc----ccccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCCccc-cchhc-----
Q 039519 394 WRNVRRMSLMKNK----IENLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAITHLP-IDLQK----- 463 (647)
Q Consensus 394 ~~~l~~L~l~~n~----i~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~~lp-~~~~~----- 463 (647)
+.+++.|.+.++- +..+.. .+++|+.|||++| .+......-+.++.++++.+..+ .+| ..|.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~---~l~~L~~LdLs~n-~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRD---EFPSLKVLDISNA-EIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHH---SCTTCCEEEEEEE-EECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTE
T ss_pred hCceeEEEEeccccHHHHHHHHH---hhccCeEEecCcc-eeEEecCcccccccccccccccc---ccCHHHhccccccc
Confidence 4677888887641 222221 1677899999998 45421111223333555656555 344 34566
Q ss_pred ---CccCcEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccc
Q 039519 464 ---LVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVL 513 (647)
Q Consensus 464 ---l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~ 513 (647)
+++|+.|++.+ .+..|+.+.|..+++|+.|.+.+ |.+..++.+++
T Consensus 97 ~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~---n~i~~i~~~aF 144 (329)
T 3sb4_A 97 TKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRK---KTAPNLLPEAL 144 (329)
T ss_dssp EEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCC---SSCCEECTTSS
T ss_pred ccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCC---CCccccchhhh
Confidence 99999999998 67899998899999999997764 55445555443
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.69 E-value=3.1e-08 Score=101.91 Aligned_cols=97 Identities=16% Similarity=0.100 Sum_probs=56.6
Q ss_pred EEecCC-CcccCccccccccEEEEEeec-cccccccc-CCCCcceeeEEeccCccccccC-ccccccccCCCeeeecCCC
Q 039519 378 LVHAGF-GLTEAPEIQNWRNVRRMSLMK-NKIENLSE-LQPALTFFLFFNMSNNHLLWKL-PLGISTLVSLEHLDLSSTA 453 (647)
Q Consensus 378 l~~~~~-~~~~~~~~~~~~~l~~L~l~~-n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~L~L~~~~ 453 (647)
+.+.+. +++.+|.+..+.+|+.|+|++ |.+..++. .+.+|++|+.|+|++| .+..+ |..|.+|++|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCc
Confidence 444554 566665555556666666664 66666553 3466666666666666 33333 3345666666666666666
Q ss_pred CCccccchhcCccCcEEeeccc
Q 039519 454 ITHLPIDLQKLVNLKCLNLQYM 475 (647)
Q Consensus 454 l~~lp~~~~~l~~L~~L~l~~~ 475 (647)
|+.+|..+....+|+.|+|.+|
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSS
T ss_pred cceeCHHHcccCCceEEEeeCC
Confidence 6666654433333666666665
No 150
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.68 E-value=1.9e-07 Score=97.44 Aligned_cols=262 Identities=16% Similarity=0.077 Sum_probs=148.5
Q ss_pred CCcccchHHHHHHHHHhhh----CCceEEEEEccCccCCC------CCC----------cceEEEEEEcCccCHHHHHHH
Q 039519 76 EPTVGLESTFDKVRRCLRE----EQVGIIGLYGMGGLLGA------PND----------FDVVIWMVVSKDLQLEKIQER 135 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~----~~~~vi~I~G~gGiGKT------~~~----------F~~~~wv~~s~~~~~~~~~~~ 135 (647)
+.++||+.+++++.+.+.. ...+.+.|+|++|+||| ... -...+|+......+...+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 6789999999999998853 45678999999999999 111 124567777777788899999
Q ss_pred HHHHhCCCCcCCCCCCHHHHHHHHHHHhc--cCCeeEEEecCCCcc----c---cccccCCCCCC--CCCcEEEEecCch
Q 039519 136 IGRRIGFLDESWKNGSLEDKASDIFRILS--KKKLLLLLDDIWERV----D---LTKVGVPFPDP--ENKSRIDFTTRFL 204 (647)
Q Consensus 136 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~----~---~~~l~~~~~~~--~~gs~IivTTR~~ 204 (647)
++.+++.... ....+..+....+.+.+. +++.+|||||++... . +..+....... ..+..+|.||+..
T Consensus 99 l~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 99 IAEAVGVRVP-FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHSCCCC-SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHhCCCCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 9999875322 123346666777777774 458899999998642 1 11111111111 3456677777755
Q ss_pred HH--------hhhcccceeEec----------------cccccCCCChHHHHHHHHHHhc---CCch-hHHHHhhHh--h
Q 039519 205 EI--------CSAMQAHEFLKV----------------EDVLKNHPNIPELARSVAQECA---GLPL-ALITIGRVM--A 254 (647)
Q Consensus 205 ~v--------~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~i~~~c~---glPL-ai~~~g~~l--~ 254 (647)
.. ...+.. ..+.+ ...+....--++..+.+++.++ |.|- ++.++.... +
T Consensus 178 ~~~~~l~~~l~~r~~~-~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a 256 (387)
T 2v1u_A 178 GFVENLEPRVKSSLGE-VELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIA 256 (387)
T ss_dssp TTSSSSCHHHHTTTTS-EECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCC-eEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 32 222211 12222 0011111112345566777777 8883 222222211 1
Q ss_pred ---c--CCCHhHHHHHHHHHhhcccCCCCCCcchhhHHHHhhcCCCchhhhhHHhhhc-CCCCCCcccHHHHHHHh----
Q 039519 255 ---C--KKTPQEWHYAIQVLRISASEFPGMGKEVYPLLKYSYDSLPDETIRSCLLYCG-LFPEDYRTRKSELIDCW---- 324 (647)
Q Consensus 255 ---~--~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~~fl~~a-~fp~~~~i~~~~Li~~w---- 324 (647)
+ .-+.+.+..+++... ...+.-++..++. +.+..++.++ ++.....+....+.+..
T Consensus 257 ~~~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~ 322 (387)
T 2v1u_A 257 ERRREERVRREHVYSARAEIE-------------RDRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERYKELT 322 (387)
T ss_dssp HHTTCSCBCHHHHHHHHHHHH-------------HHHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHH
T ss_pred HHcCCCCcCHHHHHHHHHHHh-------------hchHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 1 134555555544321 2234556788988 6666666555 44322345555444432
Q ss_pred hhcCCccccCccchHHHHHHHHHHHHHhcccccc
Q 039519 325 IGEGFLDQYDRSGAYDEGYYIIGILLHACLLEEE 358 (647)
Q Consensus 325 ~a~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 358 (647)
-..| .. .........+++.|...+++...
T Consensus 323 ~~~~-~~----~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 323 STLG-LE----HVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHTT-CC----CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhcC-CC----CCCHHHHHHHHHHHHhCCCeEEE
Confidence 1122 11 12235667789999999998863
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.63 E-value=2.8e-07 Score=96.40 Aligned_cols=204 Identities=12% Similarity=0.089 Sum_probs=112.9
Q ss_pred ccccccEEEEEeecccccccccCC-CCcceeeEEeccCccccccCc-cccccccCCCeeeecCCCCCccccchhcCccCc
Q 039519 391 IQNWRNVRRMSLMKNKIENLSELQ-PALTFFLFFNMSNNHLLWKLP-LGISTLVSLEHLDLSSTAITHLPIDLQKLVNLK 468 (647)
Q Consensus 391 ~~~~~~l~~L~l~~n~i~~l~~~~-~~l~~L~~L~l~~~~~~~~lp-~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~L~ 468 (647)
|.++ +|+.+.+..+ +..++... .+ ..|+.+.+..+ +..++ ..|.++.+|+.+++++|+++.+|...-.+.+|+
T Consensus 132 F~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~ 206 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIE 206 (401)
T ss_dssp TTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCTT--CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCS
T ss_pred cccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCCC--ccEehHHHhhCcccCCeeecCCCcceEechhhEeecccC
Confidence 4443 5777777655 66665543 33 35777887764 33443 457788888888888888888886555567888
Q ss_pred EEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccCC-----------ccccHHHhhCCCCCcEEEEEe
Q 039519 469 CLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGG-----------HQVLVEELIGMKYLMAVTITL 537 (647)
Q Consensus 469 ~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~-----------~~~~~~~l~~l~~L~~L~l~~ 537 (647)
.+.+.. .+..++...+..+.+|+.+.+.. .+..++..++.+. .......+.++++|+.+.+..
T Consensus 207 ~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~----~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 207 EVLLPV--TLKEIGSQAFLKTSQLKTIEIPE----NVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp EEECCT--TCCEECTTTTTTCTTCCCEECCT----TCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEES
T ss_pred EEEeCC--chheehhhHhhCCCCCCEEecCC----CccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCC
Confidence 888875 46788877788888888887653 2333443332110 111122345566666666653
Q ss_pred cchh-----hHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCCh--hhccccCCceEEee
Q 039519 538 KRLQ-----ALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQ--MIIQRSSLSVHNLF 610 (647)
Q Consensus 538 ~~~~-----~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~L~ 610 (647)
+... .+.. .......+|+.+.|. ++++++.-.+|.++++|+.|.|.++ ...++ .|..+ +|+.|+++
T Consensus 281 ~~~~~~~~~~I~~--~aF~~c~~L~~l~l~--~~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~ 353 (401)
T 4fdw_A 281 STFNDDPEAMIHP--YCLEGCPKLARFEIP--ESIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVE 353 (401)
T ss_dssp SCCCCCTTCEECT--TTTTTCTTCCEECCC--TTCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEEC
T ss_pred ccccCCcccEECH--HHhhCCccCCeEEeC--CceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEc
Confidence 3221 0000 000011123333332 1233333233666677777777543 22332 26666 67777776
Q ss_pred cc
Q 039519 611 IN 612 (647)
Q Consensus 611 ~~ 612 (647)
+|
T Consensus 354 ~n 355 (401)
T 4fdw_A 354 GT 355 (401)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.61 E-value=6.9e-08 Score=99.29 Aligned_cols=98 Identities=17% Similarity=0.243 Sum_probs=83.5
Q ss_pred EEEeecc-cccccccCCCCcceeeEEeccC-ccccccCc-cccccccCCCeeeecCCCCCcccc-chhcCccCcEEeecc
Q 039519 399 RMSLMKN-KIENLSELQPALTFFLFFNMSN-NHLLWKLP-LGISTLVSLEHLDLSSTAITHLPI-DLQKLVNLKCLNLQY 474 (647)
Q Consensus 399 ~L~l~~n-~i~~l~~~~~~l~~L~~L~l~~-~~~~~~lp-~~~~~L~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~ 474 (647)
.++.+++ .+..+|. ++.+++|+.|+|++ | .+..+| ..|+.|++|++|+|++|.|+.+|+ .|++|++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3577787 8999999 89999999999996 8 677776 568999999999999999997764 679999999999999
Q ss_pred cccCCcCchhhhcCCCCCcEEecccc
Q 039519 475 MYNLNQFPRLVISAFSKLQVLRMFDC 500 (647)
Q Consensus 475 ~~~l~~lp~~~i~~l~~L~~L~l~~~ 500 (647)
| .+..+|.+.+..+. |+.|++.+.
T Consensus 90 N-~l~~~~~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 90 N-ALESLSWKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp S-CCSCCCSTTTCSCC-CCEEECCSS
T ss_pred C-ccceeCHHHcccCC-ceEEEeeCC
Confidence 9 78999987565555 999877653
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.57 E-value=2.5e-07 Score=96.78 Aligned_cols=200 Identities=11% Similarity=0.097 Sum_probs=133.5
Q ss_pred cccccccEEEEEeecccccccccCCCCcceeeEEeccCccccccCc-cccccccCCCeeeecCCCCCcccc-chhcCccC
Q 039519 390 EIQNWRNVRRMSLMKNKIENLSELQPALTFFLFFNMSNNHLLWKLP-LGISTLVSLEHLDLSSTAITHLPI-DLQKLVNL 467 (647)
Q Consensus 390 ~~~~~~~l~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~L~~L~~L~L~~~~l~~lp~-~~~~l~~L 467 (647)
.|.++.+|+.+++.+|.+..++...-..+.|+.+.+..+ +..++ ..|.++.+|+.+.+..+ ++.++. .|.+ .+|
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L 250 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGI 250 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCC
T ss_pred HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCc
Confidence 577888999999999999888877644678888988865 44444 45788899999999864 677764 3444 789
Q ss_pred cEEeecccccCCcCchhhhcCCCCCcEEeccccCC--CcccccccccccCCccccHHHhhCCCCCcEEEEEecchhhHHH
Q 039519 468 KCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGG--SKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQALQE 545 (647)
Q Consensus 468 ~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~--n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~ 545 (647)
+.+.+.+ .+..++...+..+.+|+.+.+.+... +....++. ..+.++++|+.+.+. ++++.+..
T Consensus 251 ~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~-----------~aF~~c~~L~~l~l~-~~i~~I~~ 316 (401)
T 4fdw_A 251 TTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP-----------YCLEGCPKLARFEIP-ESIRILGQ 316 (401)
T ss_dssp SEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT-----------TTTTTCTTCCEECCC-TTCCEECT
T ss_pred cEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECH-----------HHhhCCccCCeEEeC-CceEEEhh
Confidence 9999965 57889888899999999998765322 11112332 236778889988886 22322211
Q ss_pred HhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChh-hcccc-CCceEEeecc
Q 039519 546 LLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQM-IIQRS-SLSVHNLFIN 612 (647)
Q Consensus 546 l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~-~L~~L~L~~~ 612 (647)
.......+|+.+.|. .+++++.-.+|.++ +|+.|.+.+|......+. |..++ +++.|++..+
T Consensus 317 --~aF~~c~~L~~l~lp--~~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 317 --GLLGGNRKVTQLTIP--ANVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp --TTTTTCCSCCEEEEC--TTCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred --hhhcCCCCccEEEEC--ccccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 001111234444443 23444443458888 999999999865444442 55564 7889988763
No 154
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.56 E-value=1.5e-06 Score=90.55 Aligned_cols=263 Identities=11% Similarity=0.019 Sum_probs=147.9
Q ss_pred CCcccchHHHHHHHHHhhh----CCce--EEEEEccCccCCC----------CCC-cceEEEEEEcCccCHHHHHHHHHH
Q 039519 76 EPTVGLESTFDKVRRCLRE----EQVG--IIGLYGMGGLLGA----------PND-FDVVIWMVVSKDLQLEKIQERIGR 138 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~----~~~~--vi~I~G~gGiGKT----------~~~-F~~~~wv~~s~~~~~~~~~~~i~~ 138 (647)
+.++||+.+++++.+.+.. .... .+.|+|.+|+||| ... -...+|+..+...+...+...++.
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 96 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIAR 96 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHH
Confidence 5689999999999998875 3334 8999999999999 222 124567777777778899999999
Q ss_pred HhCCCCcCCCCCCHHHHHHHHHHHhc--cCCeeEEEecCCCc--cccccccCCCCCC-C---CCcEEEEecCchHHhhhc
Q 039519 139 RIGFLDESWKNGSLEDKASDIFRILS--KKKLLLLLDDIWER--VDLTKVGVPFPDP-E---NKSRIDFTTRFLEICSAM 210 (647)
Q Consensus 139 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~--~~~~~l~~~~~~~-~---~gs~IivTTR~~~v~~~~ 210 (647)
.++.... ....+..+....+.+.+. +++.+||||+++.. ..+..+...+... . .+..||++|+.......+
T Consensus 97 ~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 97 SLNIPFP-RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp HTTCCCC-SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred HhCccCC-CCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 8865321 123356666666776664 56889999999864 2233332222221 1 366788887765442221
Q ss_pred cc-------ceeEec----------------cccccCCCChHHHHHHHHHHh---------cCCchhHHHHhhH-h--h-
Q 039519 211 QA-------HEFLKV----------------EDVLKNHPNIPELARSVAQEC---------AGLPLALITIGRV-M--A- 254 (647)
Q Consensus 211 ~~-------~~~~~~----------------~~~~~~~~~~~~~~~~i~~~c---------~glPLai~~~g~~-l--~- 254 (647)
.. ...+.+ ........--++....+++.+ +|.|-.+..+... . +
T Consensus 176 ~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 176 DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQ 255 (389)
T ss_dssp CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHH
T ss_pred CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHH
Confidence 10 112333 001111122245667777887 5765433322221 1 1
Q ss_pred --cC--CCHhHHHHHHHHHhhcccCCCCCCcchhhHHHHhhcCCCchhhhhHHhhhcCCC---CCCcccHHHHHHHhhh-
Q 039519 255 --CK--KTPQEWHYAIQVLRISASEFPGMGKEVYPLLKYSYDSLPDETIRSCLLYCGLFP---EDYRTRKSELIDCWIG- 326 (647)
Q Consensus 255 --~~--~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~~fl~~a~fp---~~~~i~~~~Li~~w~a- 326 (647)
+. -+.+....+..... ...+.-.+..|+. +.+.++..++.+. .+..+....+...+..
T Consensus 256 ~~~~~~i~~~~v~~~~~~~~-------------~~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 256 QNGRKHIAPEDVRKSSKEVL-------------FGISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp HTTCSSCCHHHHHHHHHHHS-------------CCCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred HhCCCCcCHHHHHHHHHHHh-------------hhhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 10 12222222222111 1112233556777 6777777666544 2224566666554432
Q ss_pred ---cCCccccCccchHHHHHHHHHHHHHhcccccc
Q 039519 327 ---EGFLDQYDRSGAYDEGYYIIGILLHACLLEEE 358 (647)
Q Consensus 327 ---~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 358 (647)
.|..+ -......++++.|.+++++...
T Consensus 322 ~~~~~~~~-----~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 322 CEEYGERP-----RVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHTTCCC-----CCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHcCCCC-----CCHHHHHHHHHHHHhCCCeEEe
Confidence 22111 1234566789999999999874
No 155
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.50 E-value=4.4e-07 Score=94.53 Aligned_cols=262 Identities=13% Similarity=0.061 Sum_probs=144.6
Q ss_pred CCcccchHHHHHHHHHhhh----CCceEEEEEccCccCCC----------CCC---cceEEEEEEcCccCHHHHHHHHHH
Q 039519 76 EPTVGLESTFDKVRRCLRE----EQVGIIGLYGMGGLLGA----------PND---FDVVIWMVVSKDLQLEKIQERIGR 138 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~----~~~~vi~I~G~gGiGKT----------~~~---F~~~~wv~~s~~~~~~~~~~~i~~ 138 (647)
..++||+++++++.+.+.. .....+.|+|++|+||| ... -...+|+......+...+...++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 6789999999999998873 45678999999999999 111 225677776666677788888887
Q ss_pred HhCCCCcCCCCCCHHHHHHHHHHHhc--cCCeeEEEecCCCcc------ccccccCCCCC-CCCCcEEEEecCchHHhhh
Q 039519 139 RIGFLDESWKNGSLEDKASDIFRILS--KKKLLLLLDDIWERV------DLTKVGVPFPD-PENKSRIDFTTRFLEICSA 209 (647)
Q Consensus 139 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~------~~~~l~~~~~~-~~~gs~IivTTR~~~v~~~ 209 (647)
.++.... ....+..+....+.+.+. +++.+||+|+++... .+..+...+.. ...+..+|+||+.......
T Consensus 100 ~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 100 SLDVKVP-FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTSCCCC-SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HhCCCCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 7754321 122345666667777765 348999999997632 22222111110 2335567778876543222
Q ss_pred ccc-------ceeEec----------------cccccCCCChHHHHHHHHHHhc---CCchhHHHH-hhHh--h---c--
Q 039519 210 MQA-------HEFLKV----------------EDVLKNHPNIPELARSVAQECA---GLPLALITI-GRVM--A---C-- 255 (647)
Q Consensus 210 ~~~-------~~~~~~----------------~~~~~~~~~~~~~~~~i~~~c~---glPLai~~~-g~~l--~---~-- 255 (647)
+.. ...+.+ ........--++..+.+++.++ |.|..+..+ .... + +
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~ 258 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDT 258 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC
Confidence 111 123333 0011112223456667777777 887643322 2111 1 1
Q ss_pred CCCHhHHHHHHHHHhhcccCCCCCCcchhhHHHHhhcCCCchhhhhHHhhhcCCCC-C-CcccHHHHHHHh--hh--cCC
Q 039519 256 KKTPQEWHYAIQVLRISASEFPGMGKEVYPLLKYSYDSLPDETIRSCLLYCGLFPE-D-YRTRKSELIDCW--IG--EGF 329 (647)
Q Consensus 256 ~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~~fl~~a~fp~-~-~~i~~~~Li~~w--~a--~g~ 329 (647)
.-+.+.+..+++... ...+.-++..++. ..+..+..++.+.+ + ..+....+.+.. ++ .|
T Consensus 259 ~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g- 323 (386)
T 2qby_A 259 KVKEEYVYMAKEEIE-------------RDRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG- 323 (386)
T ss_dssp SCCHHHHHHHHHHHH-------------HHHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-
T ss_pred ccCHHHHHHHHHHHh-------------hchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-
Confidence 134445554443321 2345556778887 66766666663222 1 223343332222 11 12
Q ss_pred ccccCccchHHHHHHHHHHHHHhccccc
Q 039519 330 LDQYDRSGAYDEGYYIIGILLHACLLEE 357 (647)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~L~~~~ll~~ 357 (647)
..+ ........+++.|.+.+++..
T Consensus 324 ~~~----~~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 324 VEA----VTQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp CCC----CCHHHHHHHHHHHHHHTSEEE
T ss_pred CCC----CCHHHHHHHHHHHHhCCCEEE
Confidence 111 122445678999999999975
No 156
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.46 E-value=5.6e-08 Score=100.72 Aligned_cols=102 Identities=12% Similarity=0.124 Sum_probs=54.2
Q ss_pred ccEEEEEeeccccccccc-----CC-CCcceeeEEeccCcccccc-Cccc-cccccCCCeeeecCCCCCccc-cch----
Q 039519 395 RNVRRMSLMKNKIENLSE-----LQ-PALTFFLFFNMSNNHLLWK-LPLG-ISTLVSLEHLDLSSTAITHLP-IDL---- 461 (647)
Q Consensus 395 ~~l~~L~l~~n~i~~l~~-----~~-~~l~~L~~L~l~~~~~~~~-lp~~-~~~L~~L~~L~L~~~~l~~lp-~~~---- 461 (647)
+.++.|++++|.+..... .+ ...+.|+.|+|++| .+.. -... ...+.+|++|+|++|.++... ..+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467777777777654221 11 12256777777777 3322 1112 234566777777777775321 122
Q ss_pred -hcCccCcEEeecccccCCc-----CchhhhcCCCCCcEEeccc
Q 039519 462 -QKLVNLKCLNLQYMYNLNQ-----FPRLVISAFSKLQVLRMFD 499 (647)
Q Consensus 462 -~~l~~L~~L~l~~~~~l~~-----lp~~~i~~l~~L~~L~l~~ 499 (647)
...++|++|+|++| .+.. ++.. +...++|++|++.+
T Consensus 151 ~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~-L~~~~~L~~L~Ls~ 192 (372)
T 3un9_A 151 LHDQCQITTLRLSNN-PLTAAGVAVLMEG-LAGNTSVTHLSLLH 192 (372)
T ss_dssp HSTTCCCCEEECCSS-CCHHHHHHHHHHH-HHTCSSCCEEECTT
T ss_pred HhcCCccceeeCCCC-CCChHHHHHHHHH-HhcCCCcCEEeCCC
Confidence 13456777777776 3332 2222 34556666665544
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.15 E-value=3.3e-06 Score=86.68 Aligned_cols=95 Identities=18% Similarity=0.070 Sum_probs=50.4
Q ss_pred CccccccccCCCeeeecCCCCCccccchhcCccCcEEeecccccCCcCchh---hh--cCCCCCcEEeccccCCCccccc
Q 039519 434 LPLGISTLVSLEHLDLSSTAITHLPIDLQKLVNLKCLNLQYMYNLNQFPRL---VI--SAFSKLQVLRMFDCGGSKIERL 508 (647)
Q Consensus 434 lp~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~---~i--~~l~~L~~L~l~~~~~n~~~~~ 508 (647)
++..+..+++|+.|+|++|.-..+|. + .+++|++|++..| . ++.. .+ ..+++|++|.+...+.+.....
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~-~---l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~ 237 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISG-G---LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG 237 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECS-B---CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS
T ss_pred HHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecC-C---CChHHHHHHHHccCCCCcEEEEeccccccccch
Confidence 33445567788888887773224444 3 3778888888765 2 3322 12 2677888887653221110000
Q ss_pred ccccccCCccccHHHh--hCCCCCcEEEEEecchh
Q 039519 509 KSNVLFGGHQVLVEEL--IGMKYLMAVTITLKRLQ 541 (647)
Q Consensus 509 ~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~ 541 (647)
. .......+ ..+++|+.|++..+.+.
T Consensus 238 --~-----~~~l~~~l~~~~~p~Lr~L~L~~~~i~ 265 (362)
T 2ra8_A 238 --D-----MNVFRPLFSKDRFPNLKWLGIVDAEEQ 265 (362)
T ss_dssp --C-----GGGTGGGSCTTTCTTCCEEEEESCTTH
T ss_pred --h-----HHHHHHHHhcCCCCCcCEEeCCCCCCc
Confidence 0 00000011 24678888888866654
No 158
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.14 E-value=5.1e-07 Score=93.47 Aligned_cols=135 Identities=16% Similarity=0.127 Sum_probs=92.3
Q ss_pred ccEEEEEeecccccc--cccCCCCcceeeEEeccCccccccC-cccc-----ccccCCCeeeecCCCCCc-----cccch
Q 039519 395 RNVRRMSLMKNKIEN--LSELQPALTFFLFFNMSNNHLLWKL-PLGI-----STLVSLEHLDLSSTAITH-----LPIDL 461 (647)
Q Consensus 395 ~~l~~L~l~~n~i~~--l~~~~~~l~~L~~L~l~~~~~~~~l-p~~~-----~~L~~L~~L~L~~~~l~~-----lp~~~ 461 (647)
++|+.|+|++|.+.. +......+++|+.|+|++| .++.. ...+ ...++|++|+|++|.++. ++..+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 689999999998865 2222245678999999999 44332 1222 245789999999998864 55566
Q ss_pred hcCccCcEEeecccccCCcC-----chhhhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEE
Q 039519 462 QKLVNLKCLNLQYMYNLNQF-----PRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTIT 536 (647)
Q Consensus 462 ~~l~~L~~L~l~~~~~l~~l-----p~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 536 (647)
..+++|++|+|++| .+... +.. +...++|++|++.++.. .... .......+..+++|+.|+++
T Consensus 180 ~~~~~L~~L~Ls~N-~l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i---~~~g-------~~~l~~~L~~~~~L~~L~Ls 247 (372)
T 3un9_A 180 AGNTSVTHLSLLHT-GLGDEGLELLAAQ-LDRNRQLQELNVAYNGA---GDTA-------ALALARAAREHPSLELLHLY 247 (372)
T ss_dssp HTCSSCCEEECTTS-SCHHHHHHHHHHH-GGGCSCCCEEECCSSCC---CHHH-------HHHHHHHHHHCSSCCEEECT
T ss_pred hcCCCcCEEeCCCC-CCCcHHHHHHHHH-HhcCCCcCeEECCCCCC---CHHH-------HHHHHHHHHhCCCCCEEecc
Confidence 78899999999998 44432 332 56677899997776443 1100 11233456677889999999
Q ss_pred ecchhh
Q 039519 537 LKRLQA 542 (647)
Q Consensus 537 ~~~~~~ 542 (647)
.|.++.
T Consensus 248 ~N~i~~ 253 (372)
T 3un9_A 248 FNELSS 253 (372)
T ss_dssp TSSCCH
T ss_pred CCCCCH
Confidence 887754
No 159
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.08 E-value=6.8e-06 Score=79.23 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=31.3
Q ss_pred CCcccchHHHHHHHHHhhhCC-ceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQ-VGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~-~~vi~I~G~gGiGKT 111 (647)
..++||+..++.+...+..+. .+.+.|+|.+|+|||
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT 59 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKT 59 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHH
Confidence 568999999999999988653 458899999999999
No 160
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.98 E-value=1.2e-05 Score=76.37 Aligned_cols=113 Identities=11% Similarity=0.138 Sum_probs=65.5
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC-----------CCCcc-eEEEEEEcCccCHHHHHHHHHHHhCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA-----------PNDFD-VVIWMVVSKDLQLEKIQERIGRRIGFL 143 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT-----------~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~~~ 143 (647)
..++|+++.++++.+.+.......+.|+|.+|+||| ...+. ..+.+..+.......+...+.......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSC
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhccc
Confidence 568999999999999998765556899999999999 11111 223333333223222222221111100
Q ss_pred CcCCCCCCHHHHHHHHHHHhccCCeeEEEecCCCc--cccccccCCCCCCCCCcEEEEecCchH
Q 039519 144 DESWKNGSLEDKASDIFRILSKKKLLLLLDDIWER--VDLTKVGVPFPDPENKSRIDFTTRFLE 205 (647)
Q Consensus 144 ~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~ 205 (647)
. .-.+++.+||+||++.. ...+.+...+.....++++|+||+...
T Consensus 97 ~-----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 97 P-----------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp C-----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred C-----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 0 00257889999999864 223333333333345678888887653
No 161
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.96 E-value=1.1e-05 Score=81.75 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=30.3
Q ss_pred CCCcccchHHHHHHHHHhhh-----CCceEEEEEccCccCCC
Q 039519 75 CEPTVGLESTFDKVRRCLRE-----EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 75 ~~~~vGr~~~~~~i~~~L~~-----~~~~vi~I~G~gGiGKT 111 (647)
...++|++..++++...+.. .....|.|+|.+|+|||
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT 52 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKT 52 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCH
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHH
Confidence 36789999999998887753 24467889999999999
No 162
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.78 E-value=2.2e-05 Score=80.58 Aligned_cols=176 Identities=18% Similarity=0.161 Sum_probs=101.0
Q ss_pred cccccEEEEEeeccccc----------ccccCCCCcceeeEEeccCccccccCccccccccCCCeeeecCCCCC-ccccc
Q 039519 392 QNWRNVRRMSLMKNKIE----------NLSELQPALTFFLFFNMSNNHLLWKLPLGISTLVSLEHLDLSSTAIT-HLPID 460 (647)
Q Consensus 392 ~~~~~l~~L~l~~n~i~----------~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~L~~~~l~-~lp~~ 460 (647)
..+++|+.|.+..+... .++..+..+++|+.|++++|..+ .+|. + .+++|+.|++..|.+. .-...
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence 34567777777554321 12222255678999999888323 4554 4 3889999999988876 22233
Q ss_pred hh--cCccCcEEeeccccc-------CCcCchhhh--cCCCCCcEEeccccCCCcccccccccccCCccccHHHh---hC
Q 039519 461 LQ--KLVNLKCLNLQYMYN-------LNQFPRLVI--SAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEEL---IG 526 (647)
Q Consensus 461 ~~--~l~~L~~L~l~~~~~-------l~~lp~~~i--~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l---~~ 526 (647)
+. .+++|++|+|+.+.. +..+... + ..+++|++|.+.+|.. .......+ ..
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~-l~~~~~p~Lr~L~L~~~~i--------------~~~~~~~la~a~~ 277 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL-FSKDRFPNLKWLGIVDAEE--------------QNVVVEMFLESDI 277 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG-SCTTTCTTCCEEEEESCTT--------------HHHHHHHHHHCSS
T ss_pred HHHccCCCCcEEEEeccccccccchhHHHHHHH-HhcCCCCCcCEEeCCCCCC--------------chHHHHHHHhCcc
Confidence 43 789999999863211 1122221 2 3478999998876543 11111122 35
Q ss_pred CCCCcEEEEEecchhhHH--HHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCChhhccccC-
Q 039519 527 MKYLMAVTITLKRLQALQ--ELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQMIIQRSS- 603 (647)
Q Consensus 527 l~~L~~L~l~~~~~~~l~--~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~- 603 (647)
+++|++|+++.|.+.... .+.. .+.++++|+.|+|++|.... .....+..
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~-------------------------~L~~l~~L~~L~L~~n~i~d--~~~~~l~~a 330 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLD-------------------------HVDKIKHLKFINMKYNYLSD--EMKKELQKS 330 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHT-------------------------THHHHTTCSEEECCSBBCCH--HHHHHHHHH
T ss_pred CCCCCEEECCCCCCChHHHHHHHh-------------------------hcccCCcceEEECCCCcCCH--HHHHHHHHH
Confidence 778999999877655421 1110 12346778888888774321 11222222
Q ss_pred -CceEEeecc
Q 039519 604 -LSVHNLFIN 612 (647)
Q Consensus 604 -L~~L~L~~~ 612 (647)
...++++++
T Consensus 331 lg~~~~~~~~ 340 (362)
T 2ra8_A 331 LPMKIDVSDS 340 (362)
T ss_dssp CCSEEECCSB
T ss_pred cCCEEEecCC
Confidence 356788774
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.73 E-value=5e-06 Score=80.97 Aligned_cols=81 Identities=26% Similarity=0.284 Sum_probs=47.6
Q ss_pred CCcceeeEEeccCccccccC---ccccccccCCCeeeecCCCCCccccchhcCc--cCcEEeecccccCCcCch------
Q 039519 415 PALTFFLFFNMSNNHLLWKL---PLGISTLVSLEHLDLSSTAITHLPIDLQKLV--NLKCLNLQYMYNLNQFPR------ 483 (647)
Q Consensus 415 ~~l~~L~~L~l~~~~~~~~l---p~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~--~L~~L~l~~~~~l~~lp~------ 483 (647)
.+++.|+.|+|++| .+..+ |..+..+++|++|+|++|.|+.+. .+..+. +|++|+|++|+....+|.
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 34556777777777 44433 344556777777777777777552 344444 677777777643333441
Q ss_pred hhhcCCCCCcEEec
Q 039519 484 LVISAFSKLQVLRM 497 (647)
Q Consensus 484 ~~i~~l~~L~~L~l 497 (647)
.++..+++|+.|+-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 23556666666643
No 164
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.70 E-value=8.6e-05 Score=74.95 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=31.8
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
..++|++..++.+.+.+..+....+.|+|.+|+|||
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt 56 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKT 56 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHH
Confidence 568999999999999998776555899999999999
No 165
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.58 E-value=8.8e-05 Score=66.93 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=27.9
Q ss_pred cccccCCCeeeecCC-CCCc-cccchhcC----ccCcEEeecccccCCcCchhhhcCCCCCcEEeccccC
Q 039519 438 ISTLVSLEHLDLSST-AITH-LPIDLQKL----VNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCG 501 (647)
Q Consensus 438 ~~~L~~L~~L~L~~~-~l~~-lp~~~~~l----~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 501 (647)
+.++++|++|+|++| .++. --..++.+ ++|++|+|++|..++.-.-..+..+++|++|++.+|.
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 344555555555555 3441 11123332 2455555555533332111123445555555555543
No 166
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.54 E-value=0.00011 Score=66.22 Aligned_cols=84 Identities=11% Similarity=0.089 Sum_probs=57.8
Q ss_pred cCCCeeeecCCCCCc-cccchhcCccCcEEeecccccCCcCchhhhcCC----CCCcEEeccccCCCcccccccccccCC
Q 039519 442 VSLEHLDLSSTAITH-LPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAF----SKLQVLRMFDCGGSKIERLKSNVLFGG 516 (647)
Q Consensus 442 ~~L~~L~L~~~~l~~-lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l----~~L~~L~l~~~~~n~~~~~~~~~~~~~ 516 (647)
.+|+.||+++|.++. --..+..+++|++|+|++|..++.-.-..++.+ ++|++|++++|.. -
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~-------------I 127 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN-------------V 127 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTT-------------C
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCc-------------C
Confidence 356666666666652 123467899999999999954433222224443 3699999999864 1
Q ss_pred ccccHHHhhCCCCCcEEEEEec
Q 039519 517 HQVLVEELIGMKYLMAVTITLK 538 (647)
Q Consensus 517 ~~~~~~~l~~l~~L~~L~l~~~ 538 (647)
+...+..+..+++|+.|+++.+
T Consensus 128 TD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 128 TDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp CHHHHHHGGGCTTCCEEEEESC
T ss_pred CHHHHHHHhcCCCCCEEECCCC
Confidence 5566677888999999999954
No 167
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.44 E-value=5.3e-05 Score=69.82 Aligned_cols=95 Identities=14% Similarity=0.104 Sum_probs=43.9
Q ss_pred cccccCCCeeeecCCCCCc-----cccchhcCccCcEEeecccccCCc-----CchhhhcCCCCCcEEeccccCCCcccc
Q 039519 438 ISTLVSLEHLDLSSTAITH-----LPIDLQKLVNLKCLNLQYMYNLNQ-----FPRLVISAFSKLQVLRMFDCGGSKIER 507 (647)
Q Consensus 438 ~~~L~~L~~L~L~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~l~~-----lp~~~i~~l~~L~~L~l~~~~~n~~~~ 507 (647)
+...++|++|+|++|.+.. +...+...++|++|+|++| .+.. +... +...++|++|++.. +.|.+..
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l~~~-L~~n~~L~~L~L~~-~~N~i~~ 137 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALVEA-LQSNTSLIELRIDN-QSQPLGN 137 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHHHG-GGGCSSCCEEECCC-CSSCCCH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHHHHH-HHhCCCceEEEecC-CCCCCCH
Confidence 3334555555555555541 2333344455555555555 3332 1222 34445555555511 1122210
Q ss_pred cccccccCCccccHHHhhCCCCCcEEEEEecchhh
Q 039519 508 LKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQA 542 (647)
Q Consensus 508 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 542 (647)
- ........+...++|+.|+++.|.+..
T Consensus 138 ~-------g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 138 N-------VEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp H-------HHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred H-------HHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 0 011234456666777777777776643
No 168
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.28 E-value=9.8e-05 Score=71.83 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=61.4
Q ss_pred ccccEEEEEeecccccccccC---CCCcceeeEEeccCccccccCcccccccc--CCCeeeecCCCCC-cccc-------
Q 039519 393 NWRNVRRMSLMKNKIENLSEL---QPALTFFLFFNMSNNHLLWKLPLGISTLV--SLEHLDLSSTAIT-HLPI------- 459 (647)
Q Consensus 393 ~~~~l~~L~l~~n~i~~l~~~---~~~l~~L~~L~l~~~~~~~~lp~~~~~L~--~L~~L~L~~~~l~-~lp~------- 459 (647)
.+++|+.|+|++|.+..++.. +..+++|+.|+|++| .+..+ ..+..+. +|++|+|++|.+. .+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 356899999999999886642 357889999999999 66665 3455565 9999999999997 4552
Q ss_pred chhcCccCcEEee
Q 039519 460 DLQKLVNLKCLNL 472 (647)
Q Consensus 460 ~~~~l~~L~~L~l 472 (647)
.+..+++|+.||-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 3678999999873
No 169
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.28 E-value=0.00017 Score=66.44 Aligned_cols=106 Identities=18% Similarity=0.126 Sum_probs=70.4
Q ss_pred ccccccEEEEEeecc-cccc-----cccCCCCcceeeEEeccCcccccc-----CccccccccCCCeeeecCCCCCc---
Q 039519 391 IQNWRNVRRMSLMKN-KIEN-----LSELQPALTFFLFFNMSNNHLLWK-----LPLGISTLVSLEHLDLSSTAITH--- 456 (647)
Q Consensus 391 ~~~~~~l~~L~l~~n-~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~-----lp~~~~~L~~L~~L~L~~~~l~~--- 456 (647)
+...++++.|+|++| .+.. +...+...++|++|+|++| .+.. +...+...++|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 344578888888888 7654 3333355677888888888 4432 33345556788889998888873
Q ss_pred --cccchhcCccCcEEee--cccccCCc-----CchhhhcCCCCCcEEeccc
Q 039519 457 --LPIDLQKLVNLKCLNL--QYMYNLNQ-----FPRLVISAFSKLQVLRMFD 499 (647)
Q Consensus 457 --lp~~~~~l~~L~~L~l--~~~~~l~~-----lp~~~i~~l~~L~~L~l~~ 499 (647)
+...+...++|++|+| ++| .+.. +... +...++|++|++.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~-L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANM-LEKNTTLLKFGYHF 160 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHH-HHHCSSCCEEECCC
T ss_pred HHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHH-HHhCCCcCEEeccC
Confidence 4566777788888988 666 3433 2222 45567888887654
No 170
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.27 E-value=0.00027 Score=64.99 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=32.4
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
..++||++.++++.+.+.....+.+.|+|.+|+|||
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT 57 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKT 57 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHH
Confidence 568999999999999998766677889999999999
No 171
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.00089 Score=66.73 Aligned_cols=99 Identities=10% Similarity=0.012 Sum_probs=64.3
Q ss_pred cccchHHHHHHHHHhhh----CCceEEEEEccCccCCC------------C---CCcc--eEEEEEEcCccCHHHHHHHH
Q 039519 78 TVGLESTFDKVRRCLRE----EQVGIIGLYGMGGLLGA------------P---NDFD--VVIWMVVSKDLQLEKIQERI 136 (647)
Q Consensus 78 ~vGr~~~~~~i~~~L~~----~~~~vi~I~G~gGiGKT------------~---~~F~--~~~wv~~s~~~~~~~~~~~i 136 (647)
+.|||+++++|...|.. +....+-|+|.+|+||| . .... ..+.|....-.+...++..|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 68999999999887763 56778899999999999 1 1111 23455544556788899999
Q ss_pred HHHhCCCCcCCCCCCHHHHHHHHHHHh---ccCCeeEEEecCCCc
Q 039519 137 GRRIGFLDESWKNGSLEDKASDIFRIL---SKKKLLLLLDDIWER 178 (647)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~~r~LlVlDdv~~~ 178 (647)
++++..... ......+....+.+.+ .++++++|||+++.-
T Consensus 102 ~~~L~g~~~--~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l 144 (318)
T 3te6_A 102 WFAISKENL--CGDISLEALNFYITNVPKAKKRKTLILIQNPENL 144 (318)
T ss_dssp HHHHSCCC----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSS
T ss_pred HHHhcCCCC--CchHHHHHHHHHHHHhhhccCCceEEEEecHHHh
Confidence 999864321 1122223333333333 456799999999874
No 172
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.14 E-value=0.0039 Score=64.76 Aligned_cols=103 Identities=14% Similarity=0.212 Sum_probs=54.8
Q ss_pred cccccccEEEEEeecccccccccC-CCCcceeeEEeccCccccccCc-cccccccCCCeeeecCC------------CC-
Q 039519 390 EIQNWRNVRRMSLMKNKIENLSEL-QPALTFFLFFNMSNNHLLWKLP-LGISTLVSLEHLDLSST------------AI- 454 (647)
Q Consensus 390 ~~~~~~~l~~L~l~~n~i~~l~~~-~~~l~~L~~L~l~~~~~~~~lp-~~~~~L~~L~~L~L~~~------------~l- 454 (647)
.|.++.+|+.+.+.. .++.++.. +.++++|+.+++..+ +..++ ..|.++..|+.+.+..+ .+
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCS
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCceeeecceeeeccccc
Confidence 466677788887763 36666554 466677777777654 22332 23444445544443221 11
Q ss_pred --------Ccc-ccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEec
Q 039519 455 --------THL-PIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRM 497 (647)
Q Consensus 455 --------~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l 497 (647)
..+ ...+.++++|+.+.+.+ .+..++.+.+..+.+|+.+.+
T Consensus 143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l 192 (394)
T 4fs7_A 143 EITIPEGVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKL 192 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCC
T ss_pred ccccCccccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEc
Confidence 111 12345566666666654 235566555666666665544
No 173
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.05 E-value=0.0023 Score=66.45 Aligned_cols=205 Identities=12% Similarity=0.079 Sum_probs=98.8
Q ss_pred cccccccEEEEEeecccccccccC-CCCcceeeEEeccCccccccC-ccccccccCCCeeeecCCCCCccccchhcCccC
Q 039519 390 EIQNWRNVRRMSLMKNKIENLSEL-QPALTFFLFFNMSNNHLLWKL-PLGISTLVSLEHLDLSSTAITHLPIDLQKLVNL 467 (647)
Q Consensus 390 ~~~~~~~l~~L~l~~n~i~~l~~~-~~~l~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~L~L~~~~l~~lp~~~~~l~~L 467 (647)
.+.++++|+.+.+..+ +..++.. +.+++.|+.+.+..+ +..+ ...+.++..|+.+.+..+. ..+........+|
T Consensus 157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~-~~i~~~~~~~~~l 232 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSL-YYLGDFALSKTGV 232 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTC-CEECTTTTTTCCC
T ss_pred hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCc-eEeehhhcccCCC
Confidence 4667778888887654 3444443 366677777777665 2233 2345666677776665432 2222233334556
Q ss_pred cEEeecccccCCcCchhhhcCCCCCcEEeccccCCCcccccccccccC----------CccccHHHhhCCCCCcEEEEEe
Q 039519 468 KCLNLQYMYNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKSNVLFG----------GHQVLVEELIGMKYLMAVTITL 537 (647)
Q Consensus 468 ~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~----------~~~~~~~~l~~l~~L~~L~l~~ 537 (647)
+.+.+.. .+..++...+..+.+|+.+.+... ...+....+.. .....-..+..+.+|+.+.+..
T Consensus 233 ~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~----~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 233 KNIIIPD--SFTELGKSVFYGCTDLESISIQNN----KLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLD 306 (394)
T ss_dssp CEEEECT--TCCEECSSTTTTCSSCCEEEECCT----TCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECT
T ss_pred ceEEECC--CceecccccccccccceeEEcCCC----cceeeccccccccccceeccCceeecccccccccccccccccc
Confidence 6666654 234555544555666666544321 11111111000 0000111244556666666531
Q ss_pred cchhhHHHHhhhhhhhhccceeeeeccCCCceEEEecccccCCccEEEEcCCCCCCCCh--hhccccCCceEEeec
Q 039519 538 KRLQALQELLISQELQRCTQFLFLRCFNDSKSLDIFCLACLHNLNKLYVAGCKHLEDFQ--MIIQRSSLSVHNLFI 611 (647)
Q Consensus 538 ~~~~~l~~l~~~~~~~~~l~~l~L~~~~~L~~L~l~~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~L~~ 611 (647)
+++.+.. .......+|+.+.+. ++++++.-.+|.++.+|+.+.|..+ +..++ .|..+++|+.+++..
T Consensus 307 -~i~~I~~--~aF~~c~~L~~i~lp--~~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 307 -SVKFIGE--EAFESCTSLVSIDLP--YLVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp -TCCEECT--TTTTTCTTCCEECCC--TTCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred -ccceech--hhhcCCCCCCEEEeC--CcccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 1111100 000001123333332 1233333233777788888888654 33333 377788888888866
No 174
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.98 E-value=0.0049 Score=63.94 Aligned_cols=35 Identities=9% Similarity=0.105 Sum_probs=19.9
Q ss_pred ccccCCccEEEEcCCCCCCCCh--hhccccCCceEEeec
Q 039519 575 LACLHNLNKLYVAGCKHLEDFQ--MIIQRSSLSVHNLFI 611 (647)
Q Consensus 575 ~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~L~~ 611 (647)
|..+.+|+++.|-.+ ...+. .|..+++|+.+++.+
T Consensus 330 F~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 330 FAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp TTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESS
T ss_pred hhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECC
Confidence 566666666666442 22332 266666666666665
No 175
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.97 E-value=0.00037 Score=70.38 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=32.4
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
..++|++..++.+.+.+..+....+.++|.+|+|||
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT 60 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKT 60 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHH
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHH
Confidence 568999999999999998877666999999999999
No 176
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.78 E-value=0.0034 Score=64.58 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=31.3
Q ss_pred CCcccchHHHHHHHHHhhhCC-ceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQ-VGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~-~~vi~I~G~gGiGKT 111 (647)
..++|++..++.+...+..+. ...+.|+|.+|+|||
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT 52 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKT 52 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHH
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHH
Confidence 568999999999999988754 357889999999999
No 177
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.73 E-value=0.003 Score=57.52 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=32.2
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
..++||+..++++.+.+.....+.+.|+|.+|+|||
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT 57 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKT 57 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHH
Confidence 568999999999999998766677889999999999
No 178
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.72 E-value=0.0015 Score=65.62 Aligned_cols=36 Identities=11% Similarity=0.246 Sum_probs=31.4
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
..++|++..++.+.+.+..+....+.++|.+|+|||
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt 52 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKT 52 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHH
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHH
Confidence 557999999999999888766555899999999999
No 179
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.51 E-value=0.016 Score=60.00 Aligned_cols=58 Identities=10% Similarity=0.011 Sum_probs=31.4
Q ss_pred cccccCCccEEEEcCCCCCCCCh--hhccccCCceEEeecccccccccchhhhhhhcCCCCcccC
Q 039519 574 CLACLHNLNKLYVAGCKHLEDFQ--MIIQRSSLSVHNLFINKNYIHTNQLSILLGINRLPHFTKS 636 (647)
Q Consensus 574 ~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~~~ 636 (647)
+|..+.+|+.+.|.++ .+.+. .|..+.+|+.+.|.. ++.. ..-..+.++.+|+.++..
T Consensus 306 aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~--sv~~-I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 306 VFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPS--SVTK-IPESAFSNCTALNNIEYS 365 (394)
T ss_dssp TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECT--TCCB-CCGGGGTTCTTCCEEEES
T ss_pred eecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECc--ccCE-EhHhHhhCCCCCCEEEEC
Confidence 3666667777766543 23332 266667777777654 2222 223356666666655443
No 180
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.44 E-value=0.039 Score=56.61 Aligned_cols=58 Identities=14% Similarity=0.018 Sum_probs=36.2
Q ss_pred ccccCCccEEEEcCCCCCCCCh-hhccccCCceEEeecccccccccchhhhhhhcCCCCccc
Q 039519 575 LACLHNLNKLYVAGCKHLEDFQ-MIIQRSSLSVHNLFINKNYIHTNQLSILLGINRLPHFTK 635 (647)
Q Consensus 575 ~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~~ 635 (647)
|..+++|+.+.+.++......+ .|..+.+|+.+.|.. ++.. ..-..+.++.+|+.+..
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~-I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKT-IQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCE-ECTTTTTTCTTCCCCCC
T ss_pred cccccccccccccccccceehhhhhcCCCCCCEEEcCc--cccE-EHHHHhhCCCCCCEEEE
Confidence 7777888888887653322222 377888888888865 3322 23335667777776654
No 181
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.25 E-value=0.0044 Score=61.07 Aligned_cols=36 Identities=31% Similarity=0.326 Sum_probs=29.9
Q ss_pred CCcccchHHHHHHHHHhhh-------------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE-------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~-------------~~~~vi~I~G~gGiGKT 111 (647)
..++|.++.++++.+.+.. ...+-+.|+|.+|+|||
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT 65 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKT 65 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHH
Confidence 5689999999999887743 34567899999999999
No 182
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.20 E-value=0.019 Score=56.04 Aligned_cols=36 Identities=8% Similarity=-0.065 Sum_probs=26.7
Q ss_pred CCcccchHHHHHHHHH-------hh---hCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRC-------LR---EEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~-------L~---~~~~~vi~I~G~gGiGKT 111 (647)
..++|.+..++++... +. ......+.|+|.+|+|||
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT 78 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKT 78 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHH
Confidence 4578888877776663 32 234567889999999999
No 183
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.81 E-value=0.0049 Score=62.02 Aligned_cols=36 Identities=8% Similarity=-0.098 Sum_probs=30.7
Q ss_pred CCcccchHHHHHHHHHhhhCC-ceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQ-VGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~-~~vi~I~G~gGiGKT 111 (647)
..++|.+..++.+.+++..+. ..++-+.|.+|+|||
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT 62 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKT 62 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHH
Confidence 668999999999999998654 367788888999999
No 184
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.58 E-value=0.011 Score=58.78 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=27.4
Q ss_pred CcccchHHHHHHHHHhh---------------hCCceEEEEEccCccCCC
Q 039519 77 PTVGLESTFDKVRRCLR---------------EEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 77 ~~vGr~~~~~~i~~~L~---------------~~~~~vi~I~G~gGiGKT 111 (647)
.++|.+..++.+.+.+. ......+.|+|.+|+|||
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT 81 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKT 81 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHH
Confidence 47899998888877654 123456889999999999
No 185
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.50 E-value=0.0041 Score=59.33 Aligned_cols=36 Identities=11% Similarity=0.037 Sum_probs=25.7
Q ss_pred CCcccc---hHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGL---ESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr---~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
+.++|. +..++.+.........+.+.|+|.+|+|||
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT 66 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRT 66 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHH
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHH
Confidence 456763 345556666665556678999999999999
No 186
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.31 E-value=0.021 Score=48.66 Aligned_cols=51 Identities=25% Similarity=0.287 Sum_probs=27.0
Q ss_pred EEeccCccccc--cCccccccccCCCeeeecCCCCCcccc-chhcCccCcEEeeccc
Q 039519 422 FFNMSNNHLLW--KLPLGISTLVSLEHLDLSSTAITHLPI-DLQKLVNLKCLNLQYM 475 (647)
Q Consensus 422 ~L~l~~~~~~~--~lp~~~~~L~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~ 475 (647)
.++-+++ .++ .+|..+. .+|++|+|++|.|+.+|. .+..+++|++|+|++|
T Consensus 12 ~v~Cs~~-~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSS-CCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCC-CCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 3444554 444 5554332 345666666666666653 2445566666666655
No 187
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.30 E-value=0.0087 Score=60.89 Aligned_cols=36 Identities=11% Similarity=0.241 Sum_probs=31.3
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
..++|+++.++.+...+..+....+.++|.+|+|||
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT 72 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKT 72 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHH
Confidence 568999999999999988765445899999999999
No 188
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.28 E-value=0.026 Score=57.38 Aligned_cols=36 Identities=14% Similarity=0.085 Sum_probs=30.1
Q ss_pred CCcccchHHHHHHHHHh-hhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCL-REEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L-~~~~~~vi~I~G~gGiGKT 111 (647)
..++|.+..++.+.+.+ ..+....+.|+|..|+|||
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKT 50 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKK 50 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHH
Confidence 56799999999999888 6554444899999999999
No 189
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.22 E-value=0.036 Score=58.18 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=31.7
Q ss_pred CCcccchHHH---HHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTF---DKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~---~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
..+||.+..+ ..+...+..+....+.++|.+|+|||
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKT 64 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKT 64 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHH
Confidence 5689999888 77888888888888999999999999
No 190
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.19 E-value=0.0068 Score=52.94 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=27.0
Q ss_pred CcccchHHHHHHHHHhhh--CCceEEEEEccCccCCC
Q 039519 77 PTVGLESTFDKVRRCLRE--EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 77 ~~vGr~~~~~~i~~~L~~--~~~~vi~I~G~gGiGKT 111 (647)
.++|++..+.++.+.+.. ....-|-|+|.+|+|||
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt 38 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRM 38 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHH
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHH
Confidence 478999999999988763 33345679999999999
No 191
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.01 E-value=0.066 Score=51.60 Aligned_cols=36 Identities=17% Similarity=0.053 Sum_probs=27.8
Q ss_pred CCcccchHHHHHHHHHhhh------------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~------------~~~~vi~I~G~gGiGKT 111 (647)
..++|.+..++++.+.+.. ...+.|.|+|.+|+|||
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT 53 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKT 53 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHH
Confidence 5689999988888776531 23356789999999999
No 192
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.98 E-value=0.039 Score=56.18 Aligned_cols=36 Identities=19% Similarity=0.119 Sum_probs=29.8
Q ss_pred CCcccchHHHHHHHHHhhh------------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~------------~~~~vi~I~G~gGiGKT 111 (647)
..++|.+..++++.+.+.. ...+.|.|+|.+|+|||
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT 131 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKT 131 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHH
Confidence 5579999999999887742 34567889999999999
No 193
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.87 E-value=0.065 Score=53.67 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=28.6
Q ss_pred CCcccchHHHHHHHHHhhh------------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~------------~~~~vi~I~G~gGiGKT 111 (647)
..++|.++.++.|.+.+.. ...+-|.++|.+|+|||
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT 59 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKS 59 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHH
Confidence 5679999999988877631 12367889999999999
No 194
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.87 E-value=0.019 Score=52.08 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhhh---CCceEEEEEccCccCCC
Q 039519 82 ESTFDKVRRCLRE---EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 82 ~~~~~~i~~~L~~---~~~~vi~I~G~gGiGKT 111 (647)
+..++.+.+++.+ .....++|+|.+|+|||
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKT 52 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKT 52 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHH
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHH
Confidence 3344444444433 23578999999999999
No 195
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.85 E-value=0.11 Score=55.05 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=31.2
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
.++|||+.+++.+.+.+......-+.++|.+|+|||
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT 215 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKT 215 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTH
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHH
Confidence 468999999999999997655556779999999999
No 196
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.81 E-value=0.054 Score=54.29 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=28.9
Q ss_pred CCcccchHHHHHHHHHhhh------------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~------------~~~~vi~I~G~gGiGKT 111 (647)
..++|.+..++++.+.+.. ...+-|.++|.+|+|||
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT 65 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKS 65 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHH
Confidence 5679999999999988731 12456889999999999
No 197
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.66 E-value=0.082 Score=54.49 Aligned_cols=36 Identities=11% Similarity=0.070 Sum_probs=29.5
Q ss_pred CCcccchHHHHHHHHHhhh------------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~------------~~~~vi~I~G~gGiGKT 111 (647)
..++|.+..++.+.+.+.. ...+-|.|+|.+|+|||
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT 162 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKT 162 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHH
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHH
Confidence 5679999999999988732 23467889999999999
No 198
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.41 E-value=0.067 Score=54.87 Aligned_cols=58 Identities=14% Similarity=0.233 Sum_probs=27.3
Q ss_pred cccccCCCeeeecCCCCCccc-cchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEec
Q 039519 438 ISTLVSLEHLDLSSTAITHLP-IDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRM 497 (647)
Q Consensus 438 ~~~L~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l 497 (647)
+..+.+|+.+.+.. .++.++ ..+.++++|+.+.+.++ .+..++...+..+.+|+.+.+
T Consensus 259 F~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 259 LQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp TTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEEC
T ss_pred cceeehhccccccc-cceecccccccccccccccccccc-ccceehhhhhcCCCCCCEEEc
Confidence 34444555555532 233333 23444555555555443 344555444555555555544
No 199
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.30 E-value=0.072 Score=54.16 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=28.3
Q ss_pred CCcccchHHHHHHHHHhhh------------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~------------~~~~vi~I~G~gGiGKT 111 (647)
..++|.+..++.|.+.+.. ...+-|.++|.+|+|||
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT 98 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKS 98 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHH
Confidence 5689999999999887631 12345789999999999
No 200
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.30 E-value=0.052 Score=46.23 Aligned_cols=52 Identities=23% Similarity=0.298 Sum_probs=43.7
Q ss_pred CeeeecCCCCC--ccccchhcCccCcEEeecccccCCcCchhhhcCCCCCcEEeccc
Q 039519 445 EHLDLSSTAIT--HLPIDLQKLVNLKCLNLQYMYNLNQFPRLVISAFSKLQVLRMFD 499 (647)
Q Consensus 445 ~~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 499 (647)
..++.++++++ .+|..+. ++|++|+|++| .+..+|.+.+..+.+|+.|++.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCS
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecC
Confidence 47888999998 9997543 37999999999 88999998888899999987765
No 201
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.24 E-value=0.063 Score=52.08 Aligned_cols=36 Identities=17% Similarity=0.034 Sum_probs=27.2
Q ss_pred CCcccchHHHHHHHHHhhh------------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~------------~~~~vi~I~G~gGiGKT 111 (647)
..++|.+..++++.+.+.. ...+-+.|+|.+|+|||
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT 58 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKT 58 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHH
Confidence 5689999988888776541 11234779999999999
No 202
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.98 E-value=0.12 Score=58.60 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=31.6
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
..++||+.+++++.+.|......-+.++|.+|+|||
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT 221 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKT 221 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHH
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHH
Confidence 467999999999999988765667789999999999
No 203
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.97 E-value=0.23 Score=56.10 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=31.4
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
..+|||+.+++++.+.+......-+.++|.+|+|||
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT 215 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKT 215 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTH
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHH
Confidence 468999999999999997755556789999999999
No 204
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.75 E-value=0.067 Score=49.32 Aligned_cols=36 Identities=14% Similarity=-0.011 Sum_probs=23.2
Q ss_pred CCcccchH----HHHHHHHHhhhC----CceEEEEEccCccCCC
Q 039519 76 EPTVGLES----TFDKVRRCLREE----QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~----~~~~i~~~L~~~----~~~vi~I~G~gGiGKT 111 (647)
+.+++.+. .++.+.+++... ....+.|+|.+|+|||
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT 68 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKT 68 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHH
Confidence 45665443 344445555443 1268899999999999
No 205
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.69 E-value=0.057 Score=58.02 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=30.6
Q ss_pred CCcccchHHHHHHHHHhhh-----------------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE-----------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~-----------------~~~~vi~I~G~gGiGKT 111 (647)
..++|++..++++.+++.. ...+.+.|+|.+|+|||
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKT 91 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKT 91 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHH
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHH
Confidence 5679999999999999864 13468999999999999
No 206
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.63 E-value=0.15 Score=50.40 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=29.2
Q ss_pred CCcccchHHHHHHHHHhhh-------------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE-------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~-------------~~~~vi~I~G~gGiGKT 111 (647)
..++|.++.++++.+.+.. ...+.|.|+|.+|+|||
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT 63 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKT 63 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHH
Confidence 5579999999888887642 24567899999999999
No 207
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.62 E-value=0.11 Score=59.60 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=31.4
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
..+|||++++.++.+.+......-+.++|.+|+|||
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT 205 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKT 205 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHH
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHH
Confidence 557999999999999988765556789999999999
No 208
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.54 E-value=0.13 Score=53.94 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=28.7
Q ss_pred CCcccchHHHHHHHHHhhh------------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~------------~~~~vi~I~G~gGiGKT 111 (647)
..++|.+..++.+.+.+.. ...+-|.++|.+|+|||
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT 181 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKS 181 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHH
Confidence 4568999999999887631 23467889999999999
No 209
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.44 E-value=0.18 Score=49.58 Aligned_cols=36 Identities=11% Similarity=0.055 Sum_probs=29.6
Q ss_pred CCcccchHHHHHHHHHhhh------------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~------------~~~~vi~I~G~gGiGKT 111 (647)
..++|.+..++.+.+.+.. ...+.|.|+|.+|+|||
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT 68 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKT 68 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHH
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHH
Confidence 5689999999999887742 23568899999999999
No 210
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.26 E-value=0.099 Score=52.76 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=30.3
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
..++|.+..++.+...+..++...+.++|.+|+|||
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKT 60 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKT 60 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHH
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHH
Confidence 446899988888888888776555899999999999
No 211
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=93.12 E-value=0.084 Score=43.76 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=19.3
Q ss_pred ChhHHHHHHHHHHhhHHhhccc
Q 039519 1 VEAVETKVGELMRDSSQEVDKL 22 (647)
Q Consensus 1 v~~~~~~~ed~~d~~~~~~~~~ 22 (647)
|||++||+||++|+|.++....
T Consensus 64 vrdlaYD~ED~iD~f~~~~~~~ 85 (115)
T 3qfl_A 64 VRELSYVIEDVVDKFLVQVDGI 85 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 6899999999999999987643
No 212
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.85 E-value=0.12 Score=52.66 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=27.1
Q ss_pred CCcccchHHHHHH---HHHhhhCCc--eEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKV---RRCLREEQV--GIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i---~~~L~~~~~--~vi~I~G~gGiGKT 111 (647)
..+||++..++.+ .+.+..+.. +.+.|+|.+|+|||
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT 84 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKT 84 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHH
Confidence 5689999987764 444444433 58899999999999
No 213
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.81 E-value=0.13 Score=51.81 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=30.3
Q ss_pred CCcccchHHHHHHHHHhhh-----CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE-----EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~-----~~~~vi~I~G~gGiGKT 111 (647)
..++|++..++++..++.. .....|.|+|.+|+|||
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT 69 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKT 69 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHH
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHH
Confidence 5689999999999888864 34457889999999999
No 214
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.52 E-value=0.16 Score=50.20 Aligned_cols=32 Identities=13% Similarity=0.145 Sum_probs=24.5
Q ss_pred cchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 80 GLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 80 Gr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
|-++.++.+.+.+..+....+-++|.+|+|||
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKt 32 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPR 32 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHH
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHH
Confidence 44566777888887766778899999999999
No 215
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.03 E-value=0.083 Score=55.39 Aligned_cols=110 Identities=17% Similarity=0.169 Sum_probs=55.6
Q ss_pred Ccc-cchHHH--HHHHHHhhhCC-ceEEEEEccCccCCC----------CCCcc--eEEEEEEcCccCHHHHHHHHHHHh
Q 039519 77 PTV-GLESTF--DKVRRCLREEQ-VGIIGLYGMGGLLGA----------PNDFD--VVIWMVVSKDLQLEKIQERIGRRI 140 (647)
Q Consensus 77 ~~v-Gr~~~~--~~i~~~L~~~~-~~vi~I~G~gGiGKT----------~~~F~--~~~wv~~s~~~~~~~~~~~i~~~l 140 (647)
.|| |....+ ..+.......+ ...+.|+|.+|+||| ...+. .++++.. ..+...+...+
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~------~~~~~~~~~~~ 179 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSM 179 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH------HHHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHH
Confidence 345 644332 33333333333 568899999999999 11121 2344433 23344444444
Q ss_pred CCCCcCCCCCCHHHHHHHHHHHhccCCeeEEEecCCCccc----cccccCCCCC-CCCCcEEEEecCc
Q 039519 141 GFLDESWKNGSLEDKASDIFRILSKKKLLLLLDDIWERVD----LTKVGVPFPD-PENKSRIDFTTRF 203 (647)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~----~~~l~~~~~~-~~~gs~IivTTR~ 203 (647)
... . ...+.+.+..+.-+|++||++.... .+.+...+.. ...|..||+||.+
T Consensus 180 ~~~-------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 180 KEG-------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp HTT-------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred Hcc-------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 321 1 1223344444677999999975321 1222111110 1346788888875
No 216
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.29 E-value=0.49 Score=49.05 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=26.5
Q ss_pred cccchHHHHHHHHHhhh-------------CCceEEEEEccCccCCC
Q 039519 78 TVGLESTFDKVRRCLRE-------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 78 ~vGr~~~~~~i~~~L~~-------------~~~~vi~I~G~gGiGKT 111 (647)
+.|.++.+++|.+.+.- ...+=|-++|++|.|||
T Consensus 183 igGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKT 229 (437)
T 4b4t_L 183 IGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKT 229 (437)
T ss_dssp GCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHH
T ss_pred hCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHH
Confidence 46899988888876541 23567889999999999
No 217
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.89 E-value=0.18 Score=46.02 Aligned_cols=116 Identities=16% Similarity=0.082 Sum_probs=61.3
Q ss_pred ceeeEEeccCccccc-----cCccccccccCCCeeeecCCCCC-----ccccchhcCccCcEEeecccccCCcCchh---
Q 039519 418 TFFLFFNMSNNHLLW-----KLPLGISTLVSLEHLDLSSTAIT-----HLPIDLQKLVNLKCLNLQYMYNLNQFPRL--- 484 (647)
Q Consensus 418 ~~L~~L~l~~~~~~~-----~lp~~~~~L~~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~l~~lp~~--- 484 (647)
+.|+.|+|++++.++ .+-..+..-++|+.|+|++|.|. .+-..+..-+.|++|+|++| .+..--..
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ala 119 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARLL 119 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHHHH
Confidence 356667776532222 12233444466777777777776 23334445567888888776 33321110
Q ss_pred -hhcCCCCCcEEeccccCCCcccccccccccCCccccHHHhhCCCCCcEEEEEecchh
Q 039519 485 -VISAFSKLQVLRMFDCGGSKIERLKSNVLFGGHQVLVEELIGMKYLMAVTITLKRLQ 541 (647)
Q Consensus 485 -~i~~l~~L~~L~l~~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 541 (647)
.+..-+.|+.|++.++..+.+.. . ........|...+.|+.|+++++...
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~---~----g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGN---Q----VEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCH---H----HHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHhhCCceeEEECCCCcCcCcCH---H----HHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 13344567777776432212200 0 01123455777788888888866543
No 218
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=90.88 E-value=0.69 Score=44.20 Aligned_cols=36 Identities=11% Similarity=0.050 Sum_probs=26.9
Q ss_pred CCcccchHHHHHHHHHhhh------------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~------------~~~~vi~I~G~gGiGKT 111 (647)
..++|.+..++++.+.+.. ...+-|.|+|.+|+|||
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT 59 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT 59 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHH
Confidence 5679999888887765431 12345889999999999
No 219
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.78 E-value=0.56 Score=47.92 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=26.2
Q ss_pred cccchHHHHHHHHHhhh-------------CCceEEEEEccCccCCC
Q 039519 78 TVGLESTFDKVRRCLRE-------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 78 ~vGr~~~~~~i~~~L~~-------------~~~~vi~I~G~gGiGKT 111 (647)
+.|.++.+++|.+.+.- ...+=|-++|++|.|||
T Consensus 150 IgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKT 196 (405)
T 4b4t_J 150 VGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKT 196 (405)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHH
T ss_pred hCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHH
Confidence 46899999988876541 13456789999999999
No 220
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.55 E-value=0.45 Score=49.31 Aligned_cols=35 Identities=14% Similarity=0.137 Sum_probs=27.1
Q ss_pred CcccchHHHHHHHHHhhh-------------CCceEEEEEccCccCCC
Q 039519 77 PTVGLESTFDKVRRCLRE-------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 77 ~~vGr~~~~~~i~~~L~~-------------~~~~vi~I~G~gGiGKT 111 (647)
.+.|.++.+++|.+.+.. ...+=|-++|++|.|||
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKT 229 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKT 229 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHH
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHH
Confidence 347999999988876431 23567889999999999
No 221
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.20 E-value=0.71 Score=47.89 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=27.3
Q ss_pred CcccchHHHHHHHHHhhh-------------CCceEEEEEccCccCCC
Q 039519 77 PTVGLESTFDKVRRCLRE-------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 77 ~~vGr~~~~~~i~~~L~~-------------~~~~vi~I~G~gGiGKT 111 (647)
.+.|.++.+++|.+.+.- ...+=|-++|++|.|||
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKT 257 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKT 257 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHH
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHH
Confidence 457899999988876531 24567889999999999
No 222
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=90.19 E-value=0.52 Score=47.25 Aligned_cols=30 Identities=10% Similarity=0.191 Sum_probs=23.3
Q ss_pred hHHHHHHHHHhhhCC-ceEEEEEccCccCCC
Q 039519 82 ESTFDKVRRCLREEQ-VGIIGLYGMGGLLGA 111 (647)
Q Consensus 82 ~~~~~~i~~~L~~~~-~~vi~I~G~gGiGKT 111 (647)
++..+.+.+.+..++ ...+-++|..|+|||
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt 38 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDD 38 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHH
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHH
Confidence 455677777777665 456889999999999
No 223
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.93 E-value=0.58 Score=48.38 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=26.8
Q ss_pred CcccchHHHHHHHHHhhh-------------CCceEEEEEccCccCCC
Q 039519 77 PTVGLESTFDKVRRCLRE-------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 77 ~~vGr~~~~~~i~~~L~~-------------~~~~vi~I~G~gGiGKT 111 (647)
.+.|.++.+++|.+.+.- ...+=|-++|++|+|||
T Consensus 173 digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT 220 (428)
T 4b4t_K 173 DVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKT 220 (428)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHH
T ss_pred HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHH
Confidence 346899999888876541 23456889999999999
No 224
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=89.69 E-value=0.1 Score=51.48 Aligned_cols=62 Identities=16% Similarity=0.167 Sum_probs=40.2
Q ss_pred ceEEEEEccCccCCC-------CCCcceEEEEEE--cCccCHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHhccCC
Q 039519 97 VGIIGLYGMGGLLGA-------PNDFDVVIWMVV--SKDLQLEKIQERIGRRIGFLDESWKNGSLEDKASDIFRILSKKK 167 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT-------~~~F~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r 167 (647)
.+++.|+|++|+||| ...-..++|+++ .+..+ . -..+.++....+.+.+...+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~-------------~-----~~~~le~~l~~i~~~l~~~~ 184 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS-------------G-----YNTDFNVFVDDIARAMLQHR 184 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSST-------------T-----CBCCHHHHHHHHHHHHHHCS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhh-------------h-----hhcCHHHHHHHHHHHHhhCC
Confidence 356789999999999 111123466766 32211 0 11456677777777787777
Q ss_pred eeEEEecCCC
Q 039519 168 LLLLLDDIWE 177 (647)
Q Consensus 168 ~LlVlDdv~~ 177 (647)
+||+|++..
T Consensus 185 -LLVIDsI~a 193 (331)
T 2vhj_A 185 -VIVIDSLKN 193 (331)
T ss_dssp -EEEEECCTT
T ss_pred -EEEEecccc
Confidence 999999854
No 225
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=88.77 E-value=0.38 Score=47.23 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=13.7
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
..+.+.++|.+|+|||
T Consensus 35 ~p~~lLl~GppGtGKT 50 (293)
T 3t15_A 35 VPLILGIWGGKGQGKS 50 (293)
T ss_dssp CCSEEEEEECTTSCHH
T ss_pred CCeEEEEECCCCCCHH
Confidence 3467889999999999
No 226
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.68 E-value=0.88 Score=46.74 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=26.4
Q ss_pred cccchHHHHHHHHHhhh-------------CCceEEEEEccCccCCC
Q 039519 78 TVGLESTFDKVRRCLRE-------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 78 ~vGr~~~~~~i~~~L~~-------------~~~~vi~I~G~gGiGKT 111 (647)
+.|.++.+++|.+.+.- ...+=|-++|++|.|||
T Consensus 184 IgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKT 230 (437)
T 4b4t_I 184 IGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKT 230 (437)
T ss_dssp TCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHH
T ss_pred cCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHH
Confidence 46899998888876531 13466889999999999
No 227
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=86.58 E-value=0.94 Score=47.92 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=28.9
Q ss_pred CCcccchHHHHHHHHHhhh-------------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE-------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~-------------~~~~vi~I~G~gGiGKT 111 (647)
..++|.+..++++.+.+.. ...+-|.|+|.+|+|||
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT 252 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHH
Confidence 3579999999999887652 23456889999999999
No 228
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=86.47 E-value=0.27 Score=42.35 Aligned_cols=35 Identities=14% Similarity=0.175 Sum_probs=25.9
Q ss_pred CcccchHHHHHHHHHhhh--CCceEEEEEccCccCCC
Q 039519 77 PTVGLESTFDKVRRCLRE--EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 77 ~~vGr~~~~~~i~~~L~~--~~~~vi~I~G~gGiGKT 111 (647)
.++|++..++++.+.+.. ....-|-|+|.+|+|||
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt 41 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFE 41 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHH
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHH
Confidence 468999999998888764 33345779999999999
No 229
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=86.25 E-value=0.9 Score=45.15 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=22.4
Q ss_pred CCcc-cchH--HHHHHHHHhhhC--CceEEEEEccCccCCC
Q 039519 76 EPTV-GLES--TFDKVRRCLREE--QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~v-Gr~~--~~~~i~~~L~~~--~~~vi~I~G~gGiGKT 111 (647)
+.|| |... ....+...+... ....+.|+|.+|+|||
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT 51 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKT 51 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHH
Confidence 4454 5332 233444444443 3467889999999999
No 230
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=86.04 E-value=1.4 Score=44.67 Aligned_cols=77 Identities=10% Similarity=0.074 Sum_probs=50.4
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcC---CCCCCHHHHHHHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDES---WKNGSLEDKASDIFRI 162 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~ 162 (647)
.-+++.|.|.+|+||| ...=..++|++....++.. .+..++.+.+. .+..+.++....+++.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l 147 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELL 147 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHH
Confidence 3468899999999999 1112368999988877654 24555543221 1234567777777766
Q ss_pred hcc-CCeeEEEecCCC
Q 039519 163 LSK-KKLLLLLDDIWE 177 (647)
Q Consensus 163 l~~-~r~LlVlDdv~~ 177 (647)
++. .--+||+|.+..
T Consensus 148 ~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 148 VRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HTTTCCSEEEEECTTT
T ss_pred HhcCCCCEEEEeChHH
Confidence 653 456899999853
No 231
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=85.93 E-value=1.4 Score=44.43 Aligned_cols=78 Identities=12% Similarity=0.075 Sum_probs=50.9
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcC---CCCCCHHHHHHHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDES---WKNGSLEDKASDIFRI 162 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~ 162 (647)
.-+++.|.|.+|+||| ...=..++|++....++.. .+++++..... ....+.++....+...
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l 134 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDEL 134 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHH
Confidence 3569999999999999 1111347888877776654 45556544321 1345666777777666
Q ss_pred hc-cCCeeEEEecCCCc
Q 039519 163 LS-KKKLLLLLDDIWER 178 (647)
Q Consensus 163 l~-~~r~LlVlDdv~~~ 178 (647)
++ .+.-++|+|.+...
T Consensus 135 ~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 135 VRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHTSCCSEEEEECTTTC
T ss_pred hhhcCCCeEEehHhhhh
Confidence 64 45668999998543
No 232
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=85.65 E-value=1.2 Score=44.89 Aligned_cols=76 Identities=11% Similarity=0.080 Sum_probs=47.7
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcCC---CCCCHHHHHHHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDESW---KNGSLEDKASDIFRI 162 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~ 162 (647)
.-+++.|.|.+|+||| ...=..++|++....++... +..++...+.+ +..+.++....++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~l 136 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 136 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHHH
Confidence 4568999999999999 11113688999887777442 44555432211 233455666555555
Q ss_pred hc-cCCeeEEEecCC
Q 039519 163 LS-KKKLLLLLDDIW 176 (647)
Q Consensus 163 l~-~~r~LlVlDdv~ 176 (647)
.+ .+--+||+|.+.
T Consensus 137 ~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 137 ARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHTCCSEEEEECGG
T ss_pred HhccCCCEEEEcCHH
Confidence 43 445589999974
No 233
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=85.38 E-value=0.24 Score=49.17 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=15.4
Q ss_pred CCceEEEEEccCccCCC
Q 039519 95 EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 95 ~~~~vi~I~G~gGiGKT 111 (647)
++.+||+|.|.||||||
T Consensus 46 ~~aKVIAIaGKGGVGKT 62 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKS 62 (314)
T ss_dssp -CCEEEEEECSTTSSHH
T ss_pred CCceEEEEECCCccCHH
Confidence 57899999999999999
No 234
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.06 E-value=1.1 Score=41.51 Aligned_cols=81 Identities=10% Similarity=0.051 Sum_probs=44.9
Q ss_pred CceEEEEEccCccCCC-------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCC----------cCCCCCCHHHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA-------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLD----------ESWKNGSLEDKASD 158 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT-------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----------~~~~~~~~~~~~~~ 158 (647)
.-.++.|+|.+|+||| ...-..++|++....++...+.+ +....+... ......+..+....
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRRVIGS 97 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHHHHHH
Confidence 3468999999999999 21113678888766556555443 232222110 00011122334445
Q ss_pred HHHHhccCCeeEEEecCCC
Q 039519 159 IFRILSKKKLLLLLDDIWE 177 (647)
Q Consensus 159 l~~~l~~~r~LlVlDdv~~ 177 (647)
++..+..+.-+||+|.+..
T Consensus 98 ~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 98 LKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHCCTTEEEEEEECCCC
T ss_pred HHHHhhcCCCEEEEcCcHH
Confidence 5555544466888898743
No 235
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=84.62 E-value=2.1 Score=42.89 Aligned_cols=80 Identities=10% Similarity=0.129 Sum_probs=47.4
Q ss_pred CceEEEEEccCccCCC--------C--C------CcceEEEEEEcCccCHHHHHHHHHHHhCCCCc----------CCCC
Q 039519 96 QVGIIGLYGMGGLLGA--------P--N------DFDVVIWMVVSKDLQLEKIQERIGRRIGFLDE----------SWKN 149 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT--------~--~------~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----------~~~~ 149 (647)
.-.++.|+|.+|+||| . . .-..++|++....++...+.+. +..++.... ....
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~-~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDI-ADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHH-HHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHH-HHHcCCCHHHHHhceeEeecCCH
Confidence 4568999999999999 1 1 1247899998888777766543 445543210 0011
Q ss_pred CCHHHHHHHHHHHhc---cCCeeEEEecCC
Q 039519 150 GSLEDKASDIFRILS---KKKLLLLLDDIW 176 (647)
Q Consensus 150 ~~~~~~~~~l~~~l~---~~r~LlVlDdv~ 176 (647)
....+....+.+.++ .+--+||+|.+.
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 122233344455554 345578888874
No 236
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=84.38 E-value=1.5 Score=49.03 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=26.2
Q ss_pred cccchHHHHHHHHHhhh-------------CCceEEEEEccCccCCC
Q 039519 78 TVGLESTFDKVRRCLRE-------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 78 ~vGr~~~~~~i~~~L~~-------------~~~~vi~I~G~gGiGKT 111 (647)
+.|.++.+++|.+.+.- ...+-|-++|.+|+|||
T Consensus 206 IgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT 252 (806)
T 3cf2_A 206 IGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252 (806)
T ss_dssp CCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHH
T ss_pred hcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHH
Confidence 46888888888876531 13466889999999999
No 237
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=84.26 E-value=1.9 Score=45.28 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=26.7
Q ss_pred CCcccchHHHHHHHHHhhh--C----------CceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE--E----------QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~--~----------~~~vi~I~G~gGiGKT 111 (647)
..++|.++.++++.+.+.. . -.+-|.|+|.+|+|||
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT 63 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKT 63 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHH
Confidence 4579999988887776431 1 1234789999999999
No 238
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=84.24 E-value=1.2 Score=46.82 Aligned_cols=36 Identities=17% Similarity=0.073 Sum_probs=27.1
Q ss_pred CCcccchHHHHHHHHHhh---hC--CceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLR---EE--QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~---~~--~~~vi~I~G~gGiGKT 111 (647)
..++|.++.++.+...+. .+ ..+-+-++|.+|+|||
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT 77 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKT 77 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHH
Confidence 568999998887665543 22 2356889999999999
No 239
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=84.07 E-value=0.36 Score=44.11 Aligned_cols=102 Identities=15% Similarity=0.098 Sum_probs=65.6
Q ss_pred ccEEEEEeecc-cccc-----cccCCCCcceeeEEeccCcccccc-----CccccccccCCCeeeecCCCCC-----ccc
Q 039519 395 RNVRRMSLMKN-KIEN-----LSELQPALTFFLFFNMSNNHLLWK-----LPLGISTLVSLEHLDLSSTAIT-----HLP 458 (647)
Q Consensus 395 ~~l~~L~l~~n-~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~-----lp~~~~~L~~L~~L~L~~~~l~-----~lp 458 (647)
+.|+.|+|++| .|.. +-..+..-+.|+.|+|++| .++. +-..+..=+.|++|+|++|.|. .+-
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 57888999875 6653 2222344468999999999 4442 2223444578999999999987 233
Q ss_pred cchhcCccCcEEeecccccCCcCchh-------hhcCCCCCcEEecc
Q 039519 459 IDLQKLVNLKCLNLQYMYNLNQFPRL-------VISAFSKLQVLRMF 498 (647)
Q Consensus 459 ~~~~~l~~L~~L~l~~~~~l~~lp~~-------~i~~l~~L~~L~l~ 498 (647)
+.+..-+.|++|+|++|. ...+... .+..-++|+.|++.
T Consensus 120 ~aL~~N~tL~~L~L~n~~-~~~ig~~g~~~ia~aL~~N~tL~~L~l~ 165 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQR-QSVLGNQVEMDMMMAIEENESLLRVGIS 165 (197)
T ss_dssp HHTTTTCCCSEEECCCCS-SCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHhhCCceeEEECCCCc-CcCcCHHHHHHHHHHHHhCCCcCeEecc
Confidence 445555679999998652 1123321 24455678888664
No 240
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=83.93 E-value=2.5 Score=40.80 Aligned_cols=36 Identities=14% Similarity=0.009 Sum_probs=24.8
Q ss_pred CCcccchHHHHHHHHHhhh-------------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE-------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~-------------~~~~vi~I~G~gGiGKT 111 (647)
..+.|.++.+++|.+.+.. .-.+=+.++|.+|+|||
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKT 58 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKT 58 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHH
Confidence 5578888888888765421 11122899999999999
No 241
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=83.81 E-value=1.6 Score=43.30 Aligned_cols=80 Identities=11% Similarity=0.189 Sum_probs=47.8
Q ss_pred CceEEEEEccCccCCC-----------CCC-----cceEEEEEEcCccCHHHHHHHHHHHhCCCCcC-------CCCCCH
Q 039519 96 QVGIIGLYGMGGLLGA-----------PND-----FDVVIWMVVSKDLQLEKIQERIGRRIGFLDES-------WKNGSL 152 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT-----------~~~-----F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 152 (647)
.-.++.|+|.+|+||| ... -..++|++....++...+.+. +..++...+. ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~-~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENM-AKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHH-HHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHH-HHHhCCCHHHHhccEEEEeCCCH
Confidence 3468999999999999 110 247899998888777766543 4555442210 011222
Q ss_pred H---HHHHHHHHHhc--cCCeeEEEecCC
Q 039519 153 E---DKASDIFRILS--KKKLLLLLDDIW 176 (647)
Q Consensus 153 ~---~~~~~l~~~l~--~~r~LlVlDdv~ 176 (647)
+ +....+.+.++ .+.-+||+|.+.
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 2 23445555554 345577788774
No 242
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=83.74 E-value=1.5 Score=41.28 Aligned_cols=81 Identities=10% Similarity=0.099 Sum_probs=46.5
Q ss_pred CceEEEEEccCccCCC-------C--CC-------cceEEEEEEcCccCHHHHHHHHHHHhCCCCc----C---CCCCCH
Q 039519 96 QVGIIGLYGMGGLLGA-------P--ND-------FDVVIWMVVSKDLQLEKIQERIGRRIGFLDE----S---WKNGSL 152 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT-------~--~~-------F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~---~~~~~~ 152 (647)
.-.+++|+|.+|+||| . .. -..++|++....++...+. .++..++.... . ....+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 3469999999999999 1 11 3578898877755555443 33444443210 0 011223
Q ss_pred HH---HHHHHHHHhc-cCCeeEEEecCCC
Q 039519 153 ED---KASDIFRILS-KKKLLLLLDDIWE 177 (647)
Q Consensus 153 ~~---~~~~l~~~l~-~~r~LlVlDdv~~ 177 (647)
.+ ....+.+.+. .+.-+||+|.+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 32 2333555554 3567888998854
No 243
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=81.30 E-value=0.78 Score=45.08 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=28.8
Q ss_pred CCcccchHHHHHHHHHhhh--------------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE--------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~--------------~~~~vi~I~G~gGiGKT 111 (647)
..++|.+..++.+...+.. .....+.++|.+|+|||
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT 64 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKT 64 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHH
Confidence 4579999999998887754 23456779999999999
No 244
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=81.01 E-value=0.86 Score=41.74 Aligned_cols=32 Identities=13% Similarity=0.164 Sum_probs=25.3
Q ss_pred cchHHHHHHHHHhhh---CCceEEEEEccCccCCC
Q 039519 80 GLESTFDKVRRCLRE---EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 80 Gr~~~~~~i~~~L~~---~~~~vi~I~G~gGiGKT 111 (647)
.|++.++++.+.+.. ....+|+|.|..|+|||
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKs 36 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKT 36 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHH
Confidence 356677778777764 35679999999999999
No 245
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=80.86 E-value=2.9 Score=41.99 Aligned_cols=77 Identities=12% Similarity=0.144 Sum_probs=49.2
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcC---CCCCCHHHHHHHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDES---WKNGSLEDKASDIFRI 162 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~ 162 (647)
.-+++.|.|.+|+||| ...=..++|++....++.. .++.++...+. ....+.++....++..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l 134 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADML 134 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 4578999999999999 1111367899988777653 24555543221 1234566666666655
Q ss_pred hcc-CCeeEEEecCCC
Q 039519 163 LSK-KKLLLLLDDIWE 177 (647)
Q Consensus 163 l~~-~r~LlVlDdv~~ 177 (647)
.+. +.-+||+|.+..
T Consensus 135 ~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 135 VRSGALDIIVIDSVAA 150 (349)
T ss_dssp HTTTCCSEEEEECGGG
T ss_pred HhcCCCCEEEEcChHh
Confidence 543 466899999843
No 246
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=80.57 E-value=3.2 Score=40.82 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=49.5
Q ss_pred eEEEEEccCccCCC----------CCC--cceEEEEEEcCccCHHHHHHHHHHHhCCCCcCC---CCCCHHHH-HHHHHH
Q 039519 98 GIIGLYGMGGLLGA----------PND--FDVVIWMVVSKDLQLEKIQERIGRRIGFLDESW---KNGSLEDK-ASDIFR 161 (647)
Q Consensus 98 ~vi~I~G~gGiGKT----------~~~--F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~-~~~l~~ 161 (647)
.++-|.|.+|+||| ... =..++||+..+.++.. .+++++.+.+.. ...+.++. ...+..
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 37899999999999 111 2468999988887764 367777654321 23455555 444333
Q ss_pred H--h-ccCCeeEEEecCCCc
Q 039519 162 I--L-SKKKLLLLLDDIWER 178 (647)
Q Consensus 162 ~--l-~~~r~LlVlDdv~~~ 178 (647)
. + +++.-+||+|-|...
T Consensus 104 l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTC
T ss_pred HHHhhccCceEEEEeccccc
Confidence 3 3 346789999998543
No 247
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=79.36 E-value=5.8 Score=41.85 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=26.6
Q ss_pred CCcccchHHHHHHHHHhhh--C----------CceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE--E----------QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~--~----------~~~vi~I~G~gGiGKT 111 (647)
..++|.++.++++.+.... . -.+-|.|+|.+|+|||
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKT 78 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKT 78 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHH
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHH
Confidence 5689999888887765431 1 1223889999999999
No 248
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=78.75 E-value=2.2 Score=42.30 Aligned_cols=80 Identities=11% Similarity=0.128 Sum_probs=47.6
Q ss_pred CceEEEEEccCccCCC--------C---C----------Cc-----ceEEEEEEcCccCHHHHHHHHHHHhCCCCc----
Q 039519 96 QVGIIGLYGMGGLLGA--------P---N----------DF-----DVVIWMVVSKDLQLEKIQERIGRRIGFLDE---- 145 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT--------~---~----------~F-----~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---- 145 (647)
.-.++.|+|.+|+||| . . .. ..++|++....++...+.+. +..++.+.+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCCCHHHHhc
Confidence 4578999999999999 1 0 11 47899998888877776644 455554321
Q ss_pred C---CCCCCHH---HHHHHHHHHhcc--CCeeEEEecCC
Q 039519 146 S---WKNGSLE---DKASDIFRILSK--KKLLLLLDDIW 176 (647)
Q Consensus 146 ~---~~~~~~~---~~~~~l~~~l~~--~r~LlVlDdv~ 176 (647)
. ....+.+ +....+.+.++. +.-+||+|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0 0112222 233445555543 34577778774
No 249
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=78.40 E-value=1.2 Score=41.46 Aligned_cols=30 Identities=23% Similarity=0.192 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 82 ESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 82 ~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
++..+++.+.+......+|+|+|.+|+|||
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKT 52 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKT 52 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHH
Confidence 334455566555567889999999999999
No 250
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=78.22 E-value=2.6 Score=47.71 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=28.5
Q ss_pred CCcccchHHHHHHHHHhhh-------------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE-------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~-------------~~~~vi~I~G~gGiGKT 111 (647)
..++|.+..++++.+.+.. .....|.|+|.+|+|||
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKT 252 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHH
Confidence 3468999999988887652 23457899999999999
No 251
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=77.94 E-value=0.37 Score=45.11 Aligned_cols=103 Identities=11% Similarity=-0.145 Sum_probs=52.6
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHhcc
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDESWKNGSLEDKASDIFRILSK 165 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 165 (647)
.-.++.|+|..|+||| ..+-..++.+...... + ....++++++............+....+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~ 87 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFN 87 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhC
Confidence 3468899999999999 1111233334332221 1 2224444454332211223344555555554444
Q ss_pred CCe-eEEEecCCCc--cccccccCCCCCCCCCcEEEEecCch
Q 039519 166 KKL-LLLLDDIWER--VDLTKVGVPFPDPENKSRIDFTTRFL 204 (647)
Q Consensus 166 ~r~-LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~ 204 (647)
.++ +||+|.+..- ++++.+.. +.. .|-.||+|-+..
T Consensus 88 ~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 88 DETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDK 126 (223)
T ss_dssp TTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSB
T ss_pred CCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccc
Confidence 445 9999999642 23333221 111 266788888743
No 252
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=77.42 E-value=1.7 Score=42.93 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=19.2
Q ss_pred HHHHHHHHhhhC---CceEEEEEccCccCCC
Q 039519 84 TFDKVRRCLREE---QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 84 ~~~~i~~~L~~~---~~~vi~I~G~gGiGKT 111 (647)
.++.+.+++..- ....+.|+|.+|+|||
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT 166 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKS 166 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHH
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHH
Confidence 344444555542 2467889999999999
No 253
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=76.41 E-value=1.1 Score=41.38 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=24.5
Q ss_pred cchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 80 GLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 80 Gr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
+.++..+++.+.+......+|+|+|.+|+|||
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKT 44 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKT 44 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHH
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHH
Confidence 34455566666665567889999999999999
No 254
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=76.16 E-value=1.1 Score=43.01 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=25.6
Q ss_pred CCcccchHHHHHHHHHhhh--CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE--EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~--~~~~vi~I~G~gGiGKT 111 (647)
..++|.+..+.++.+.+.. .....|.|+|.+|+|||
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt 43 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKE 43 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHH
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHH
Confidence 4579999999988877653 23356779999999999
No 255
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=75.69 E-value=1.2 Score=43.91 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=29.1
Q ss_pred CCcccchHHHHHHHHHhhhC---------CceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREE---------QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~---------~~~vi~I~G~gGiGKT 111 (647)
..++|.+..++.+...+... ....+.++|.+|+|||
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt 61 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKT 61 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHH
Confidence 35789999999988877642 1358999999999999
No 256
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=75.42 E-value=5.2 Score=42.87 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=25.7
Q ss_pred cccchHHHHHHHHHhhh------CCceEEEEEccCccCCC
Q 039519 78 TVGLESTFDKVRRCLRE------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 78 ~vGr~~~~~~i~~~L~~------~~~~vi~I~G~gGiGKT 111 (647)
++|.+...+.+.+.+.- .....+.++|.+|+|||
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKT 122 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKT 122 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHH
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHH
Confidence 57888877777655431 24568999999999999
No 257
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=73.07 E-value=1.9 Score=43.16 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=24.8
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
..++|.+..++.+...+......-|-|+|.+|+|||
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT 59 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKS 59 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTT
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHH
Confidence 457999886665444443322334889999999999
No 258
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=72.53 E-value=0.54 Score=42.77 Aligned_cols=49 Identities=16% Similarity=0.087 Sum_probs=27.2
Q ss_pred HHHHHHHhccCC-eeEEEecCCCc-----cccccccCCCCCCCCCcEEEEecCch
Q 039519 156 ASDIFRILSKKK-LLLLLDDIWER-----VDLTKVGVPFPDPENKSRIDFTTRFL 204 (647)
Q Consensus 156 ~~~l~~~l~~~r-~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~IivTTR~~ 204 (647)
....++.+...+ =|||||++... ...+.+...+........||+|+|..
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 444555555444 49999999532 11122222222233456799999974
No 259
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=72.39 E-value=1.7 Score=42.78 Aligned_cols=36 Identities=8% Similarity=0.070 Sum_probs=28.7
Q ss_pred CCcccchHHHHHHHHHhhh--CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE--EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~--~~~~vi~I~G~gGiGKT 111 (647)
+.++|++..+.++.+.+.. .....|-|+|.+|+|||
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt 39 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKE 39 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHH
Confidence 3579999999999888764 33446779999999999
No 260
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=71.88 E-value=1.7 Score=43.43 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=27.7
Q ss_pred CCcccchHHHHHHHHHhhh-----CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE-----EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~-----~~~~vi~I~G~gGiGKT 111 (647)
..++|.+..++.+...+.. .....+.++|.+|+|||
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKT 65 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKT 65 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHH
Confidence 4578988877777766643 23467999999999999
No 261
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=71.01 E-value=1.6 Score=43.43 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=28.4
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
+.++|+++.++.+...+..++ -+.++|.+|+|||
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT 60 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKT 60 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHH
T ss_pred cceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHH
Confidence 458999999988888877643 5778999999999
No 262
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=70.24 E-value=13 Score=38.41 Aligned_cols=16 Identities=19% Similarity=0.218 Sum_probs=14.6
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+|.++|.+|+|||
T Consensus 99 ~p~vIlivG~~G~GKT 114 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKT 114 (443)
T ss_dssp SSEEEEEECCTTSSHH
T ss_pred CCeEEEEECcCCCCHH
Confidence 3679999999999999
No 263
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=70.19 E-value=2.4 Score=38.86 Aligned_cols=28 Identities=18% Similarity=0.106 Sum_probs=20.6
Q ss_pred HHHHHHHHhhh--CCceEEEEEccCccCCC
Q 039519 84 TFDKVRRCLRE--EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 84 ~~~~i~~~L~~--~~~~vi~I~G~gGiGKT 111 (647)
.+++|.+.+.. ....+|+|+|..|+|||
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKS 36 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKS 36 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHH
Confidence 44455555543 35679999999999999
No 264
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=69.72 E-value=9.5 Score=39.25 Aligned_cols=15 Identities=20% Similarity=0.115 Sum_probs=13.9
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+|+|+|.+|+|||
T Consensus 98 ~~vi~i~G~~GsGKT 112 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKT 112 (425)
T ss_dssp SEEEEEECCTTSSHH
T ss_pred CeEEEEECCCCCCHH
Confidence 569999999999999
No 265
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=69.66 E-value=1.3 Score=39.09 Aligned_cols=14 Identities=29% Similarity=0.285 Sum_probs=12.9
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
.+|+|.|++|+|||
T Consensus 2 ~~I~l~G~~GsGKs 15 (179)
T 3lw7_A 2 KVILITGMPGSGKS 15 (179)
T ss_dssp CEEEEECCTTSCHH
T ss_pred cEEEEECCCCCCHH
Confidence 47899999999999
No 266
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=69.44 E-value=9 Score=37.30 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=14.5
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+|+|+|.+|+|||
T Consensus 104 ~g~vi~lvG~~GsGKT 119 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKT 119 (296)
T ss_dssp CSSEEEEEESTTSSHH
T ss_pred CCcEEEEECCCCCCHH
Confidence 4579999999999999
No 267
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=69.43 E-value=8.1 Score=35.57 Aligned_cols=15 Identities=27% Similarity=0.058 Sum_probs=13.7
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
-.+++|.|.+|+|||
T Consensus 23 G~~~~i~G~~GsGKT 37 (235)
T 2w0m_A 23 GFFIALTGEPGTGKT 37 (235)
T ss_dssp TCEEEEECSTTSSHH
T ss_pred CCEEEEEcCCCCCHH
Confidence 468999999999999
No 268
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=69.03 E-value=8.7 Score=39.22 Aligned_cols=80 Identities=11% Similarity=0.149 Sum_probs=45.4
Q ss_pred CceEEEEEccCccCCC-----------CC-----CcceEEEEEEcCccCHHHHHHHHHHHhCCCCcC-------CCCCCH
Q 039519 96 QVGIIGLYGMGGLLGA-----------PN-----DFDVVIWMVVSKDLQLEKIQERIGRRIGFLDES-------WKNGSL 152 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT-----------~~-----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 152 (647)
.-.++.|+|.+|+||| .. .-..++|++....++...+.. +++.++..... ....+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~-~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVS-IAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHH-HHHHcCCChHhHhhcEEEeccCCh
Confidence 3569999999999999 10 224588998877666555433 55555543210 011222
Q ss_pred H---HHHHHHHHHhc-cCCeeEEEecCC
Q 039519 153 E---DKASDIFRILS-KKKLLLLLDDIW 176 (647)
Q Consensus 153 ~---~~~~~l~~~l~-~~r~LlVlDdv~ 176 (647)
. +....+.+.+. .+.-+||+|.+-
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 2 22233333333 345688888763
No 269
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=68.62 E-value=2.8 Score=41.86 Aligned_cols=33 Identities=21% Similarity=0.102 Sum_probs=24.1
Q ss_pred ccchHHHHHHHHHhh----hCCceEEEEEccCccCCC
Q 039519 79 VGLESTFDKVRRCLR----EEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 79 vGr~~~~~~i~~~L~----~~~~~vi~I~G~gGiGKT 111 (647)
|+.+...+++.+.+. .+....|.|+|++|+|||
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKT 38 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKS 38 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHH
Confidence 455566666666654 345667999999999999
No 270
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=68.43 E-value=3 Score=44.08 Aligned_cols=34 Identities=9% Similarity=-0.041 Sum_probs=28.1
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
+.++|++..++.+...+..+ .-|-++|.+|+|||
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT 55 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKS 55 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHH
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHH
Confidence 35799999998888777665 36779999999999
No 271
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=67.92 E-value=18 Score=35.22 Aligned_cols=79 Identities=14% Similarity=0.043 Sum_probs=38.8
Q ss_pred ceEEEEEccCccCCC----------CCCcceEEEEEEcCc-cCHHHHHHHHHHHhCCCCcC-CCCCCHHHHHHHHHHHhc
Q 039519 97 VGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKD-LQLEKIQERIGRRIGFLDES-WKNGSLEDKASDIFRILS 164 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~~l~ 164 (647)
..+|+++|.+|+||| ...=..+.+++.... ......++......+...-. ....+..+......+.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 569999999999999 111124555554322 12222233444444432100 012344444443444444
Q ss_pred cCCe-eEEEecC
Q 039519 165 KKKL-LLLLDDI 175 (647)
Q Consensus 165 ~~r~-LlVlDdv 175 (647)
..+| ++|+|-.
T Consensus 178 ~~~~D~ViIDTp 189 (297)
T 1j8m_F 178 SEKMEIIIVDTA 189 (297)
T ss_dssp HTTCSEEEEECC
T ss_pred hCCCCEEEEeCC
Confidence 2333 6777765
No 272
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=67.75 E-value=16 Score=38.03 Aligned_cols=91 Identities=16% Similarity=0.197 Sum_probs=53.9
Q ss_pred HHHHHhhh-CCceEEEEEccCccCCC-----------CCCcceEEEEEEcCcc-CHHHHHHHHHHHhCCC-----CcC--
Q 039519 87 KVRRCLRE-EQVGIIGLYGMGGLLGA-----------PNDFDVVIWMVVSKDL-QLEKIQERIGRRIGFL-----DES-- 146 (647)
Q Consensus 87 ~i~~~L~~-~~~~vi~I~G~gGiGKT-----------~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-----~~~-- 146 (647)
+.++.|.- ..-.-++|+|-+|+||| +.+-+.++++-+++.. .+.++.+++...=... ...
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvv 221 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVAL 221 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEE
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEE
Confidence 44555542 34468999999999999 2344667778787765 4677888777652221 000
Q ss_pred ---CCCCCHHHH------HHHHHHHh---ccCCeeEEEecCCC
Q 039519 147 ---WKNGSLEDK------ASDIFRIL---SKKKLLLLLDDIWE 177 (647)
Q Consensus 147 ---~~~~~~~~~------~~~l~~~l---~~~r~LlVlDdv~~ 177 (647)
.-+...... .-.+.+++ +++.+|+++||+-.
T Consensus 222 V~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 222 VYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 011111111 22333444 46899999999854
No 273
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=67.00 E-value=11 Score=38.04 Aligned_cols=86 Identities=12% Similarity=0.095 Sum_probs=44.0
Q ss_pred HHHHhhh-CCceEEEEEccCccCCC-------------CCCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCCcCCCCCCH
Q 039519 88 VRRCLRE-EQVGIIGLYGMGGLLGA-------------PNDFDVVIWMVVSKDL-QLEKIQERIGRRIGFLDESWKNGSL 152 (647)
Q Consensus 88 i~~~L~~-~~~~vi~I~G~gGiGKT-------------~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~ 152 (647)
+++.+.. ..-..++|+|.+|+||| ...+.+ +++-+++.. .+.++.+.+-..+ . ... -+...
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~~Ev~~~~~~~~~~v-V-~at-adep~ 239 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERPEEVTEMQRLVKGEV-V-AST-FDEPA 239 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCHHHHHHHHTTCSSEE-E-EEC-TTSCH
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCChHHHHHHHHHhCeEE-E-EeC-CCCCH
Confidence 3444432 34568999999999999 123333 356677654 3444433331000 0 000 11111
Q ss_pred HHHHH------HHHHHh--ccCCeeEEEecCCC
Q 039519 153 EDKAS------DIFRIL--SKKKLLLLLDDIWE 177 (647)
Q Consensus 153 ~~~~~------~l~~~l--~~~r~LlVlDdv~~ 177 (647)
..... .+.+++ .++.+||++||+-.
T Consensus 240 ~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR 272 (422)
T 3ice_A 240 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 272 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchH
Confidence 11111 122333 57999999999964
No 274
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=66.08 E-value=20 Score=35.19 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=28.7
Q ss_pred CceEEEEEccCccCCC-----------CCCcceEEEEEEcCccCHHHHHHHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA-----------PNDFDVVIWMVVSKDLQLEKIQERIGRR 139 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT-----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 139 (647)
.-.++.|.|.+|+||| ... ..++|++.. .+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g-~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND-DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT-CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEECC--CCHHHHHHHHHHH
Confidence 4468999999999999 222 567777655 4566666666654
No 275
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=65.91 E-value=18 Score=37.22 Aligned_cols=15 Identities=33% Similarity=0.162 Sum_probs=14.2
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+|.++|.+|+|||
T Consensus 97 ~~vI~lvG~~GsGKT 111 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKT 111 (433)
T ss_dssp SEEEEECCCTTSCHH
T ss_pred CeEEEEECCCCCCHH
Confidence 679999999999999
No 276
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=65.61 E-value=1.9 Score=42.42 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=15.0
Q ss_pred hCCceEEEEEccCccCCC
Q 039519 94 EEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 94 ~~~~~vi~I~G~gGiGKT 111 (647)
....++|+|+|.||+|||
T Consensus 38 ~~~~~vI~v~~KGGvGKT 55 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKS 55 (307)
T ss_dssp --CCEEEEEECSTTSSHH
T ss_pred cCCceEEEEECCCCccHH
Confidence 346789999999999999
No 277
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=65.23 E-value=3.7 Score=35.38 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=14.4
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
....++|+|..|+|||
T Consensus 35 ~g~~~~l~G~~G~GKT 50 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKS 50 (149)
T ss_dssp CCSEEEEESSSTTTTC
T ss_pred CCCEEEEECCCCCCHH
Confidence 4568999999999999
No 278
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=64.05 E-value=14 Score=36.18 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=39.7
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHH--HHHHHHHHhCCCCcC-CCCCCHHHH-HHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEK--IQERIGRRIGFLDES-WKNGSLEDK-ASDIFR 161 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~--~~~~i~~~l~~~~~~-~~~~~~~~~-~~~l~~ 161 (647)
...+|+|+|.+|+||| ...=..+.++.. +.+.... -+...+...+...-. ....+.... ...+.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 3569999999999999 111123444443 3333222 223444554432110 011222222 234444
Q ss_pred HhccCCeeEEEecCC
Q 039519 162 ILSKKKLLLLLDDIW 176 (647)
Q Consensus 162 ~l~~~r~LlVlDdv~ 176 (647)
.+....=++|+|-.-
T Consensus 182 a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 182 ALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHTTCSEEEEEECC
T ss_pred HHhcCCCEEEEECCC
Confidence 454555578888653
No 279
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=63.92 E-value=2 Score=37.76 Aligned_cols=14 Identities=21% Similarity=0.128 Sum_probs=12.9
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
.+|.|.|++|+|||
T Consensus 2 ~~i~l~G~~GsGKs 15 (173)
T 3kb2_A 2 TLIILEGPDCCFKS 15 (173)
T ss_dssp CEEEEECSSSSSHH
T ss_pred eEEEEECCCCCCHH
Confidence 47899999999999
No 280
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=63.56 E-value=17 Score=37.58 Aligned_cols=16 Identities=13% Similarity=0.206 Sum_probs=14.5
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
..++|.++|.+|+|||
T Consensus 99 ~~~vI~ivG~~GvGKT 114 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKT 114 (433)
T ss_dssp SSEEEEEECSTTSSHH
T ss_pred CCeEEEEECCCCCCHH
Confidence 4679999999999999
No 281
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=63.54 E-value=3.9 Score=41.14 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=20.0
Q ss_pred HHHHHHHhh--hCCceEEEEEccCccCCC
Q 039519 85 FDKVRRCLR--EEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 85 ~~~i~~~L~--~~~~~vi~I~G~gGiGKT 111 (647)
..++.+.+. ..+..+|+|+|.+|+|||
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKS 93 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKS 93 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHH
Confidence 344444444 356789999999999999
No 282
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=62.98 E-value=13 Score=38.81 Aligned_cols=90 Identities=18% Similarity=0.210 Sum_probs=54.5
Q ss_pred HHHHhhh-CCceEEEEEccCccCCC-----------CCCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCC------cCC-
Q 039519 88 VRRCLRE-EQVGIIGLYGMGGLLGA-----------PNDFDVVIWMVVSKDL-QLEKIQERIGRRIGFLD------ESW- 147 (647)
Q Consensus 88 i~~~L~~-~~~~vi~I~G~gGiGKT-----------~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~------~~~- 147 (647)
.++.|.- .+-.-++|+|-+|+||| +.+-+.++++-+++.. .+.++.+++...=..+. ...
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvv 234 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVAL 234 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEE
Confidence 3444442 34457899999999999 3345778888888765 46777777765421110 000
Q ss_pred ----CCCC------HHHHHHHHHHHhc---cCCeeEEEecCCC
Q 039519 148 ----KNGS------LEDKASDIFRILS---KKKLLLLLDDIWE 177 (647)
Q Consensus 148 ----~~~~------~~~~~~~l~~~l~---~~r~LlVlDdv~~ 177 (647)
-+.. .....-.+.++++ ++.+|+++||+-.
T Consensus 235 V~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 235 VYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp EEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 0111 1122334555664 5899999999853
No 283
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=62.88 E-value=2.1 Score=37.96 Aligned_cols=14 Identities=21% Similarity=0.048 Sum_probs=13.0
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
.+|.|.|++|+|||
T Consensus 4 ~~i~l~G~~GsGKS 17 (178)
T 1qhx_A 4 RMIILNGGSSAGKS 17 (178)
T ss_dssp CEEEEECCTTSSHH
T ss_pred eEEEEECCCCCCHH
Confidence 57899999999999
No 284
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=62.84 E-value=8.7 Score=38.44 Aligned_cols=81 Identities=16% Similarity=0.242 Sum_probs=44.5
Q ss_pred CceEEEEEccCccCCC---------C--C-Cc----ceEEEEEEcCccCHHHHHHHHHHHhCCCCc----------CCCC
Q 039519 96 QVGIIGLYGMGGLLGA---------P--N-DF----DVVIWMVVSKDLQLEKIQERIGRRIGFLDE----------SWKN 149 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT---------~--~-~F----~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----------~~~~ 149 (647)
.-.++.|+|.+|+||| . . .. ..++|++....+....+. .+++..+.... ....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~-~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIR-EIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHH-HHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHH-HHHHHcCCCHHHHhhCEEEEecCCh
Confidence 4579999999999999 1 1 11 245899876665444332 23443332110 0001
Q ss_pred CCHHHHHHHHHHHhc------cCCeeEEEecCCC
Q 039519 150 GSLEDKASDIFRILS------KKKLLLLLDDIWE 177 (647)
Q Consensus 150 ~~~~~~~~~l~~~l~------~~r~LlVlDdv~~ 177 (647)
....+....+...+. .+.-+||+|.+-.
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 112334445555554 3566888888754
No 285
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=62.81 E-value=12 Score=42.02 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=25.9
Q ss_pred CCcccchHHHHHHHHHhhh-------------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE-------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~-------------~~~~vi~I~G~gGiGKT 111 (647)
..+.|.++.++++.+.+.- ...+-|-++|++|.|||
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT 525 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKT 525 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHH
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCch
Confidence 4457888888888776531 12344679999999999
No 286
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=62.49 E-value=24 Score=34.81 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=14.6
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+++|+|..|+|||
T Consensus 128 ~g~vi~lvG~nGaGKT 143 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKT 143 (328)
T ss_dssp SSEEEEEECCTTSSHH
T ss_pred CCeEEEEECCCCCCHH
Confidence 4579999999999999
No 287
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=62.33 E-value=16 Score=46.65 Aligned_cols=81 Identities=26% Similarity=0.191 Sum_probs=44.3
Q ss_pred HHHHHhhhCCceEEEEEccCccCCC---------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcCCCCCCHHHHHH
Q 039519 87 KVRRCLREEQVGIIGLYGMGGLLGA---------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDESWKNGSLEDKAS 157 (647)
Q Consensus 87 ~i~~~L~~~~~~vi~I~G~gGiGKT---------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 157 (647)
.+.+.+...+ +-|-++|.+|+||| ...+ ..+.+..+..-+...+++.+...+...... . ...-.
T Consensus 1258 ~ll~~~l~~~-~~vLL~GPpGtGKT~la~~~l~~~~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~-~-g~~~~--- 1330 (2695)
T 4akg_A 1258 KIFYDLLNSK-RGIILCGPPGSGKTMIMNNALRNSSLY-DVVGINFSKDTTTEHILSALHRHTNYVTTS-K-GLTLL--- 1330 (2695)
T ss_dssp HHHHHHHHHT-CEEEEECSTTSSHHHHHHHHHHSCSSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEET-T-TEEEE---
T ss_pred HHHHHHHHCC-CeEEEECCCCCCHHHHHHHHHhcCCCC-ceEEEEeecCCCHHHHHHHHHHHhhhcccc-C-Ccccc---
Confidence 3444444433 45668999999999 1122 345566666666777777666655321100 0 00000
Q ss_pred HHHHHhccCCeeEEEecCCC
Q 039519 158 DIFRILSKKKLLLLLDDIWE 177 (647)
Q Consensus 158 ~l~~~l~~~r~LlVlDdv~~ 177 (647)
-.-.+++.++.+||++-
T Consensus 1331 ---P~~~gk~~VlFiDEinm 1347 (2695)
T 4akg_A 1331 ---PKSDIKNLVLFCDEINL 1347 (2695)
T ss_dssp ---EBSSSSCEEEEEETTTC
T ss_pred ---CCCCCceEEEEeccccc
Confidence 00025778888999764
No 288
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=61.55 E-value=5.6 Score=37.57 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=25.2
Q ss_pred CCcccchHHHHHHHHHhhh--C----------CceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE--E----------QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~--~----------~~~vi~I~G~gGiGKT 111 (647)
+.++|.+..+.++.+.... . -.+-+.|+|.+|+|||
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKT 63 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKT 63 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHH
Confidence 4578988877777665431 1 1123899999999999
No 289
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=61.43 E-value=2.3 Score=38.19 Aligned_cols=15 Identities=27% Similarity=0.122 Sum_probs=13.8
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+|+|+|++|+|||
T Consensus 9 g~~i~l~G~~GsGKS 23 (191)
T 1zp6_A 9 GNILLLSGHPGSGKS 23 (191)
T ss_dssp TEEEEEEECTTSCHH
T ss_pred CeEEEEECCCCCCHH
Confidence 468999999999999
No 290
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=61.06 E-value=10 Score=46.88 Aligned_cols=76 Identities=11% Similarity=0.080 Sum_probs=50.5
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcCC---CCCCHHHHHHHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDESW---KNGSLEDKASDIFRI 162 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~ 162 (647)
..+.|-|+|.+|+||| ...=..++|+++.+.++... ++.++.+.+.+ .....++..+.+++.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~l 1500 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 1500 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHHH
Confidence 4678999999999999 11113578888888777655 44555322111 233455666667766
Q ss_pred hc-cCCeeEEEecCC
Q 039519 163 LS-KKKLLLLLDDIW 176 (647)
Q Consensus 163 l~-~~r~LlVlDdv~ 176 (647)
.+ .+.-+||+|.+.
T Consensus 1501 vr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1501 ARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHTCCSEEEESCGG
T ss_pred HhcCCCCEEEEcChh
Confidence 64 466799999995
No 291
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=60.38 E-value=2.6 Score=38.27 Aligned_cols=16 Identities=25% Similarity=0.002 Sum_probs=14.2
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+|.|+|++|+|||
T Consensus 24 ~~~~i~l~G~~GsGKs 39 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKT 39 (199)
T ss_dssp CCCEEEEECCTTSCHH
T ss_pred CCCEEEEEcCCCCCHH
Confidence 3468999999999999
No 292
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=60.31 E-value=30 Score=34.97 Aligned_cols=25 Identities=0% Similarity=-0.287 Sum_probs=18.6
Q ss_pred HHHHHhhh-CCceEEEEEccCccCCC
Q 039519 87 KVRRCLRE-EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 87 ~i~~~L~~-~~~~vi~I~G~gGiGKT 111 (647)
++++.+.- ..-.-++|+|.+|+|||
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT 189 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKT 189 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHH
T ss_pred hhhhhcccccCCceEEEecCCCCChh
Confidence 45555543 34568899999999999
No 293
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=60.07 E-value=2.5 Score=37.73 Aligned_cols=14 Identities=21% Similarity=0.209 Sum_probs=13.3
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
++++|+|+.|+|||
T Consensus 6 ~~i~i~GpsGsGKS 19 (180)
T 1kgd_A 6 KTLVLLGAHGVGRR 19 (180)
T ss_dssp CEEEEECCTTSSHH
T ss_pred CEEEEECCCCCCHH
Confidence 58999999999999
No 294
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=60.02 E-value=2.6 Score=37.30 Aligned_cols=14 Identities=29% Similarity=0.114 Sum_probs=12.9
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
.+|.|.|++|+|||
T Consensus 3 ~~I~i~G~~GsGKS 16 (181)
T 1ly1_A 3 KIILTIGCPGSGKS 16 (181)
T ss_dssp EEEEEECCTTSSHH
T ss_pred eEEEEecCCCCCHH
Confidence 47899999999999
No 295
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=60.00 E-value=3.5 Score=41.55 Aligned_cols=34 Identities=18% Similarity=0.064 Sum_probs=26.9
Q ss_pred cccchHHHHHHHHHhhh---------------CCceEEEEEccCccCCC
Q 039519 78 TVGLESTFDKVRRCLRE---------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 78 ~vGr~~~~~~i~~~L~~---------------~~~~vi~I~G~gGiGKT 111 (647)
++|.+..++.+...+.. .....|.++|.+|+|||
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT 65 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKT 65 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHH
Confidence 68999999988887731 13456889999999999
No 296
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=59.96 E-value=16 Score=33.87 Aligned_cols=91 Identities=11% Similarity=0.091 Sum_probs=47.5
Q ss_pred HHHHHHHhhhCCceEEEEEccCccCCC-------------CCCcc-eEEEEEEcCccCHHHHHHHHHHHhCCCCcC----
Q 039519 85 FDKVRRCLREEQVGIIGLYGMGGLLGA-------------PNDFD-VVIWMVVSKDLQLEKIQERIGRRIGFLDES---- 146 (647)
Q Consensus 85 ~~~i~~~L~~~~~~vi~I~G~gGiGKT-------------~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---- 146 (647)
.+++...+..+ +.+.|.|..|+||| ..... ..+.+......-...+.+.+...++.....
T Consensus 66 q~~~i~~i~~g--~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~ 143 (235)
T 3llm_A 66 ESEILEAISQN--SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGY 143 (235)
T ss_dssp HHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEE
T ss_pred HHHHHHHHhcC--CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEE
Confidence 34444555444 58899999999999 22222 233333333333445555555544422100
Q ss_pred --------------CCCCCHHHHHHHHHHHhccCCeeEEEecCCCc
Q 039519 147 --------------WKNGSLEDKASDIFRILSKKKLLLLLDDIWER 178 (647)
Q Consensus 147 --------------~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~ 178 (647)
+-..+.+.....+...+.+- -+||+|.++..
T Consensus 144 ~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~~ 188 (235)
T 3llm_A 144 SVRFESILPRPHASIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHER 188 (235)
T ss_dssp EETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTC-CEEEECCTTSC
T ss_pred eechhhccCCCCCeEEEECHHHHHHHHHhhhcCC-cEEEEECCccC
Confidence 00123444555555433333 47889999863
No 297
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=59.91 E-value=0.96 Score=40.88 Aligned_cols=14 Identities=21% Similarity=0.086 Sum_probs=12.6
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
+.|.|+|++|+|||
T Consensus 2 RpIVi~GPSG~GK~ 15 (186)
T 1ex7_A 2 RPIVISGPSGTGKS 15 (186)
T ss_dssp CCEEEECCTTSSHH
T ss_pred CEEEEECCCCCCHH
Confidence 46889999999999
No 298
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=59.83 E-value=3.9 Score=37.31 Aligned_cols=29 Identities=14% Similarity=0.100 Sum_probs=21.0
Q ss_pred CceEEEEEccCccCCC------CCCcceEEEEEEc
Q 039519 96 QVGIIGLYGMGGLLGA------PNDFDVVIWMVVS 124 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT------~~~F~~~~wv~~s 124 (647)
...+|+|+|.+|+||| ...+....+++..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 3468999999999999 4455455566543
No 299
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=59.41 E-value=2.8 Score=37.55 Aligned_cols=15 Identities=20% Similarity=-0.115 Sum_probs=13.6
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
...|+|+|+.|+|||
T Consensus 10 ~~~I~l~G~~GsGKS 24 (184)
T 1y63_A 10 GINILITGTPGTGKT 24 (184)
T ss_dssp SCEEEEECSTTSSHH
T ss_pred CCEEEEECCCCCCHH
Confidence 458999999999999
No 300
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=59.22 E-value=2.2 Score=37.65 Aligned_cols=14 Identities=29% Similarity=-0.007 Sum_probs=13.0
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
.+|+|+|+.|+|||
T Consensus 5 ~~i~l~G~~GsGKS 18 (173)
T 1kag_A 5 RNIFLVGPMGAGKS 18 (173)
T ss_dssp CCEEEECCTTSCHH
T ss_pred CeEEEECCCCCCHH
Confidence 47999999999999
No 301
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=58.79 E-value=2.7 Score=37.60 Aligned_cols=16 Identities=19% Similarity=0.115 Sum_probs=14.2
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+|.|.|++|+|||
T Consensus 12 ~~~~i~l~G~~GsGKs 27 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKT 27 (186)
T ss_dssp CCEEEEEECCTTSSHH
T ss_pred CCcEEEEEcCCCCCHH
Confidence 4468999999999999
No 302
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=58.68 E-value=2.7 Score=38.38 Aligned_cols=14 Identities=36% Similarity=0.240 Sum_probs=13.0
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
.+|+|.|+.|+|||
T Consensus 3 ~~i~l~G~~GsGKS 16 (206)
T 1jjv_A 3 YIVGLTGGIGSGKT 16 (206)
T ss_dssp EEEEEECSTTSCHH
T ss_pred cEEEEECCCCCCHH
Confidence 47999999999999
No 303
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=58.27 E-value=5.7 Score=38.61 Aligned_cols=17 Identities=18% Similarity=-0.080 Sum_probs=15.1
Q ss_pred CCceEEEEEccCccCCC
Q 039519 95 EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 95 ~~~~vi~I~G~gGiGKT 111 (647)
....+|+|+|..|+|||
T Consensus 29 ~~~~ii~I~G~sGsGKS 45 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKS 45 (290)
T ss_dssp CSCEEEEEECCTTSSHH
T ss_pred CCCeEEEEECCCCCCHH
Confidence 35679999999999999
No 304
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=58.20 E-value=2.8 Score=37.38 Aligned_cols=15 Identities=27% Similarity=0.171 Sum_probs=13.4
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
.+.|.|+|++|+|||
T Consensus 5 ~~~i~l~G~~GsGKs 19 (185)
T 3trf_A 5 LTNIYLIGLMGAGKT 19 (185)
T ss_dssp CCEEEEECSTTSSHH
T ss_pred CCEEEEECCCCCCHH
Confidence 357899999999999
No 305
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=57.98 E-value=2.9 Score=36.69 Aligned_cols=15 Identities=20% Similarity=0.135 Sum_probs=13.3
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+|+|.|+.|+|||
T Consensus 7 ~~~i~l~G~~GsGKS 21 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKS 21 (168)
T ss_dssp -CEEEEESCTTSSHH
T ss_pred cceEEEECCCCCCHH
Confidence 468999999999999
No 306
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=57.61 E-value=5.3 Score=40.41 Aligned_cols=36 Identities=17% Similarity=0.039 Sum_probs=26.7
Q ss_pred CCcccchHHHHHHHHHhhh------------------------------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE------------------------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~------------------------------~~~~vi~I~G~gGiGKT 111 (647)
..++|.+..++.+...+.. .....+.++|.+|+|||
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT 86 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKT 86 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHH
Confidence 3468998888888776620 12346889999999999
No 307
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=57.47 E-value=3.9 Score=36.29 Aligned_cols=15 Identities=27% Similarity=0.120 Sum_probs=9.5
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+|.|.|++|+|||
T Consensus 5 ~~~I~l~G~~GsGKS 19 (183)
T 2vli_A 5 SPIIWINGPFGVGKT 19 (183)
T ss_dssp CCEEEEECCC----C
T ss_pred CeEEEEECCCCCCHH
Confidence 357999999999999
No 308
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=57.26 E-value=3.3 Score=39.30 Aligned_cols=17 Identities=18% Similarity=0.065 Sum_probs=14.7
Q ss_pred CCceEEEEEccCccCCC
Q 039519 95 EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 95 ~~~~vi~I~G~gGiGKT 111 (647)
....+|+|.|+.|+|||
T Consensus 20 ~~~~iI~I~G~~GSGKS 36 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKS 36 (252)
T ss_dssp -CCEEEEEECSTTSSHH
T ss_pred CCcEEEEEECCCCCCHH
Confidence 35678999999999999
No 309
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=56.94 E-value=3.1 Score=36.69 Aligned_cols=15 Identities=27% Similarity=0.204 Sum_probs=13.7
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+|+|+|+.|+|||
T Consensus 8 g~~i~l~G~~GsGKS 22 (175)
T 1knq_A 8 HHIYVLMGVSGSGKS 22 (175)
T ss_dssp SEEEEEECSTTSCHH
T ss_pred CcEEEEEcCCCCCHH
Confidence 468999999999999
No 310
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=56.89 E-value=3.5 Score=37.32 Aligned_cols=17 Identities=29% Similarity=0.229 Sum_probs=15.0
Q ss_pred CCceEEEEEccCccCCC
Q 039519 95 EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 95 ~~~~vi~I~G~gGiGKT 111 (647)
....+|+|.|+.|+|||
T Consensus 6 ~~~~~I~i~G~~GsGKS 22 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKS 22 (203)
T ss_dssp CCCEEEEEEECTTSCHH
T ss_pred cCceEEEEECCCCCCHH
Confidence 35678999999999999
No 311
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=56.87 E-value=2.7 Score=37.33 Aligned_cols=15 Identities=27% Similarity=0.158 Sum_probs=13.3
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+|.|.|++|+|||
T Consensus 11 ~~~i~i~G~~GsGKs 25 (180)
T 3iij_A 11 LPNILLTGTPGVGKT 25 (180)
T ss_dssp CCCEEEECSTTSSHH
T ss_pred CCeEEEEeCCCCCHH
Confidence 357889999999999
No 312
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=56.81 E-value=3 Score=37.76 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=14.4
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+|+|.|+.|+|||
T Consensus 11 ~~~iIgltG~~GSGKS 26 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKS 26 (192)
T ss_dssp CEEEEEEECSTTSSHH
T ss_pred cceEEEEECCCCCCHH
Confidence 4568999999999999
No 313
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=56.80 E-value=3 Score=37.93 Aligned_cols=14 Identities=36% Similarity=0.235 Sum_probs=13.0
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
.+|+|+|+.|+|||
T Consensus 2 ~~i~i~G~~GsGKS 15 (204)
T 2if2_A 2 KRIGLTGNIGCGKS 15 (204)
T ss_dssp CEEEEEECTTSSHH
T ss_pred eEEEEECCCCcCHH
Confidence 47999999999999
No 314
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=56.60 E-value=3.3 Score=37.60 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=14.5
Q ss_pred CCceEEEEEccCccCCC
Q 039519 95 EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 95 ~~~~vi~I~G~gGiGKT 111 (647)
....+|+|.|+.|+|||
T Consensus 27 ~~g~~i~l~G~~GsGKS 43 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKT 43 (200)
T ss_dssp -CCCEEEEECCTTSCHH
T ss_pred CCCcEEEEECCCCCCHH
Confidence 34579999999999999
No 315
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=56.50 E-value=4.7 Score=36.56 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=15.6
Q ss_pred hCCceEEEEEccCccCCC
Q 039519 94 EEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 94 ~~~~~vi~I~G~gGiGKT 111 (647)
.....+|+|+|+.|+|||
T Consensus 22 ~~~g~~i~l~G~sGsGKS 39 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKS 39 (200)
T ss_dssp TSCCEEEEEECSTTSSHH
T ss_pred CCCCeEEEEECCCCCCHH
Confidence 345679999999999999
No 316
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=56.33 E-value=8 Score=37.14 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=25.6
Q ss_pred CCcccchHHHHHHHHHhhh--C----------CceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE--E----------QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~--~----------~~~vi~I~G~gGiGKT 111 (647)
..++|.++.++++.+.... . -.+-+.|+|.+|+|||
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKT 87 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKT 87 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHH
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHH
Confidence 4578998888777665431 1 1122889999999999
No 317
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=55.99 E-value=3.3 Score=36.57 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=13.8
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+++|+|..|+|||
T Consensus 9 gei~~l~G~nGsGKS 23 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKS 23 (171)
T ss_dssp SEEEEEECCTTSCHH
T ss_pred CEEEEEECCCCCCHH
Confidence 468999999999999
No 318
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=55.87 E-value=2.7 Score=37.70 Aligned_cols=14 Identities=21% Similarity=0.086 Sum_probs=13.1
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
++++|+|..|+|||
T Consensus 2 ~ii~l~GpsGaGKs 15 (186)
T 3a00_A 2 RPIVISGPSGTGKS 15 (186)
T ss_dssp CCEEEESSSSSSHH
T ss_pred CEEEEECCCCCCHH
Confidence 57999999999999
No 319
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=55.66 E-value=3.2 Score=37.64 Aligned_cols=15 Identities=7% Similarity=-0.004 Sum_probs=13.7
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+++|+|..|+|||
T Consensus 7 g~ii~l~Gp~GsGKS 21 (205)
T 3tr0_A 7 ANLFIISAPSGAGKT 21 (205)
T ss_dssp CCEEEEECCTTSCHH
T ss_pred CcEEEEECcCCCCHH
Confidence 358999999999999
No 320
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=55.61 E-value=3.4 Score=36.50 Aligned_cols=16 Identities=6% Similarity=-0.004 Sum_probs=14.1
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+++|+|..|+|||
T Consensus 3 ~~~~i~i~G~sGsGKT 18 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKT 18 (169)
T ss_dssp -CCEEEEECCTTSSHH
T ss_pred CCEEEEEECCCCCCHH
Confidence 3579999999999999
No 321
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=55.51 E-value=56 Score=32.11 Aligned_cols=39 Identities=8% Similarity=-0.250 Sum_probs=23.2
Q ss_pred ccCCeeEEEecCCC-c--cccccccCCCCCCCCCcEEEEecC
Q 039519 164 SKKKLLLLLDDIWE-R--VDLTKVGVPFPDPENKSRIDFTTR 202 (647)
Q Consensus 164 ~~~r~LlVlDdv~~-~--~~~~~l~~~~~~~~~gs~IivTTR 202 (647)
-+.+-++|+|++.. . +..+.+...+.....++.+|++|.
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~ 115 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGN 115 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEES
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 35677888999865 2 344445444444445677666553
No 322
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=54.89 E-value=3.8 Score=36.71 Aligned_cols=15 Identities=13% Similarity=-0.022 Sum_probs=13.5
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+|.|.|++|+|||
T Consensus 5 ~~~I~l~G~~GsGKS 19 (193)
T 2rhm_A 5 PALIIVTGHPATGKT 19 (193)
T ss_dssp CEEEEEEESTTSSHH
T ss_pred CeEEEEECCCCCCHH
Confidence 458999999999999
No 323
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=54.61 E-value=43 Score=35.18 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=13.4
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
..++|+|+|.+|+|||
T Consensus 100 ~~~vI~ivG~~GvGKT 115 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKT 115 (504)
T ss_dssp --EEEEEECSTTSSHH
T ss_pred CCeEEEEECCCCCCHH
Confidence 3569999999999999
No 324
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=54.58 E-value=3.5 Score=37.81 Aligned_cols=16 Identities=25% Similarity=0.156 Sum_probs=14.2
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+|+|+|+.|+|||
T Consensus 7 ~g~~i~l~GpsGsGKs 22 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKG 22 (208)
T ss_dssp CCCEEEEECCTTSCHH
T ss_pred CCcEEEEECcCCCCHH
Confidence 3468999999999999
No 325
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=54.54 E-value=3.5 Score=37.46 Aligned_cols=15 Identities=27% Similarity=0.133 Sum_probs=13.6
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+|+|+|+.|+|||
T Consensus 6 g~~i~l~G~~GsGKS 20 (207)
T 2j41_A 6 GLLIVLSGPSGVGKG 20 (207)
T ss_dssp CCEEEEECSTTSCHH
T ss_pred CCEEEEECCCCCCHH
Confidence 358999999999999
No 326
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=54.50 E-value=3.1 Score=37.94 Aligned_cols=16 Identities=13% Similarity=0.194 Sum_probs=14.0
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+|+|+|++|+|||
T Consensus 11 ~~~~i~l~G~sGsGKs 26 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKG 26 (204)
T ss_dssp CCCCEEEECCTTSCHH
T ss_pred cCCEEEEECCCCCCHH
Confidence 3468999999999999
No 327
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=54.44 E-value=3.7 Score=36.82 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=12.9
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
.+++|+|+.|+|||
T Consensus 3 ~ii~l~G~~GaGKS 16 (189)
T 2bdt_A 3 KLYIITGPAGVGKS 16 (189)
T ss_dssp EEEEEECSTTSSHH
T ss_pred eEEEEECCCCCcHH
Confidence 47899999999999
No 328
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=54.38 E-value=3.5 Score=36.82 Aligned_cols=14 Identities=14% Similarity=0.318 Sum_probs=13.0
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
.+|.|.|++|+|||
T Consensus 4 ~~I~i~G~~GsGKs 17 (192)
T 1kht_A 4 KVVVVTGVPGVGST 17 (192)
T ss_dssp CEEEEECCTTSCHH
T ss_pred eEEEEECCCCCCHH
Confidence 57999999999999
No 329
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=54.32 E-value=3.9 Score=37.07 Aligned_cols=16 Identities=31% Similarity=0.254 Sum_probs=14.4
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+|+|.|+.|+|||
T Consensus 14 ~~~~I~l~G~~GsGKs 29 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKG 29 (203)
T ss_dssp TCEEEEEECSTTSSHH
T ss_pred CCcEEEEECCCCCCHH
Confidence 4568999999999999
No 330
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=53.90 E-value=8.8 Score=37.18 Aligned_cols=16 Identities=19% Similarity=-0.066 Sum_probs=14.1
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+|.|.|++|+|||
T Consensus 32 ~~~livl~G~sGsGKS 47 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKT 47 (287)
T ss_dssp SCEEEEEECCTTSCTH
T ss_pred CCeEEEEECCCCCCHH
Confidence 3568899999999999
No 331
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=53.87 E-value=3.8 Score=36.76 Aligned_cols=16 Identities=25% Similarity=0.135 Sum_probs=14.2
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+|+|.|++|+|||
T Consensus 8 ~~~~I~l~G~~GsGKs 23 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKG 23 (196)
T ss_dssp TSCEEEEEECTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3468999999999999
No 332
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=53.70 E-value=19 Score=37.41 Aligned_cols=80 Identities=15% Similarity=0.219 Sum_probs=42.8
Q ss_pred eEEEEEccCccCCC-----------CCCcceEEEEEEcCcc-CHHHHHHHHHHHhCCCCc----CCCCCCHHHH------
Q 039519 98 GIIGLYGMGGLLGA-----------PNDFDVVIWMVVSKDL-QLEKIQERIGRRIGFLDE----SWKNGSLEDK------ 155 (647)
Q Consensus 98 ~vi~I~G~gGiGKT-----------~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~~------ 155 (647)
..++|+|.+|+||| ...-+.++++-+++.. ...++.+++...=..... ..-.+.....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~ 231 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALT 231 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHH
Confidence 46899999999999 2222455666666654 455666655432000000 0011111111
Q ss_pred HHHHHHHh---ccCCeeEEEecCCC
Q 039519 156 ASDIFRIL---SKKKLLLLLDDIWE 177 (647)
Q Consensus 156 ~~~l~~~l---~~~r~LlVlDdv~~ 177 (647)
.-.+.+++ +++++|+++||+..
T Consensus 232 ~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 232 GLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHhcCCcEEEEeccHHH
Confidence 11233333 47899999999953
No 333
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=53.43 E-value=8.4 Score=36.42 Aligned_cols=16 Identities=31% Similarity=0.038 Sum_probs=14.2
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+|.|+|++|+|||
T Consensus 31 ~~~~i~l~G~~GsGKS 46 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKT 46 (253)
T ss_dssp SCEEEEEESCGGGTTH
T ss_pred CCeEEEEECCCCCCHH
Confidence 3568999999999999
No 334
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=53.41 E-value=3.7 Score=38.01 Aligned_cols=14 Identities=21% Similarity=0.226 Sum_probs=13.2
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
.+|+|+|..|+|||
T Consensus 6 ~~i~i~G~~GsGKS 19 (227)
T 1cke_A 6 PVITIDGPSGAGKG 19 (227)
T ss_dssp CEEEEECCTTSSHH
T ss_pred eEEEEECCCCCCHH
Confidence 58999999999999
No 335
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=53.08 E-value=3.8 Score=36.59 Aligned_cols=14 Identities=21% Similarity=0.128 Sum_probs=12.9
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
.+|.|.|++|+|||
T Consensus 2 ~~I~i~G~~GsGKs 15 (194)
T 1nks_A 2 KIGIVTGIPGVGKS 15 (194)
T ss_dssp EEEEEEECTTSCHH
T ss_pred eEEEEECCCCCCHH
Confidence 47899999999999
No 336
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=52.82 E-value=6.6 Score=35.85 Aligned_cols=28 Identities=7% Similarity=0.101 Sum_probs=19.4
Q ss_pred HHHHHHHHhhhC-CceEEEEEccCccCCC
Q 039519 84 TFDKVRRCLREE-QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 84 ~~~~i~~~L~~~-~~~vi~I~G~gGiGKT 111 (647)
-+..+..++.+- ..+.+.|+|.+|+|||
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKT 72 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKS 72 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHH
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHH
Confidence 355555555431 2347899999999999
No 337
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=52.81 E-value=3.2 Score=37.74 Aligned_cols=14 Identities=21% Similarity=0.095 Sum_probs=13.1
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
++++|+|..|+|||
T Consensus 5 ~~i~lvGpsGaGKS 18 (198)
T 1lvg_A 5 RPVVLSGPSGAGKS 18 (198)
T ss_dssp CCEEEECCTTSSHH
T ss_pred CEEEEECCCCCCHH
Confidence 57899999999999
No 338
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=52.26 E-value=3.1 Score=37.12 Aligned_cols=14 Identities=21% Similarity=0.074 Sum_probs=12.7
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
.+|+|.|++|+|||
T Consensus 3 ~~I~l~G~~GsGKs 16 (184)
T 2iyv_A 3 PKAVLVGLPGSGKS 16 (184)
T ss_dssp CSEEEECSTTSSHH
T ss_pred CeEEEECCCCCCHH
Confidence 36899999999999
No 339
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=51.82 E-value=5.2 Score=37.25 Aligned_cols=15 Identities=20% Similarity=-0.051 Sum_probs=9.8
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+++|+|..|+|||
T Consensus 27 G~ii~l~Gp~GsGKS 41 (231)
T 3lnc_A 27 GVILVLSSPSGCGKT 41 (231)
T ss_dssp CCEEEEECSCC----
T ss_pred CCEEEEECCCCCCHH
Confidence 468999999999999
No 340
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=51.68 E-value=3.3 Score=37.58 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=13.6
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+|+|.|+.|+|||
T Consensus 18 ~~~I~l~G~~GsGKS 32 (202)
T 3t61_A 18 PGSIVVMGVSGSGKS 32 (202)
T ss_dssp SSCEEEECSTTSCHH
T ss_pred CeEEEEECCCCCCHH
Confidence 458999999999999
No 341
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=51.63 E-value=8.7 Score=36.08 Aligned_cols=32 Identities=13% Similarity=0.078 Sum_probs=21.2
Q ss_pred cchHHHHHHHHHhhh--CCceEEEEEccCccCCC
Q 039519 80 GLESTFDKVRRCLRE--EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 80 Gr~~~~~~i~~~L~~--~~~~vi~I~G~gGiGKT 111 (647)
+....+.++...... .....|+|.|++|+|||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKs 43 (243)
T 3tlx_A 10 STIDLLNELKRRYACLSKPDGRYIFLGAPGSGKG 43 (243)
T ss_dssp CHHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHH
T ss_pred chHHHHHHHHHHHHhccCCCcEEEEECCCCCCHH
Confidence 333444455444332 35668999999999999
No 342
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=51.49 E-value=4.6 Score=38.49 Aligned_cols=15 Identities=27% Similarity=0.352 Sum_probs=13.6
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+|.|.|++|+|||
T Consensus 4 ~~lIvl~G~pGSGKS 18 (260)
T 3a4m_A 4 IMLIILTGLPGVGKS 18 (260)
T ss_dssp CEEEEEECCTTSSHH
T ss_pred CEEEEEEcCCCCCHH
Confidence 468999999999999
No 343
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=51.38 E-value=4.3 Score=36.26 Aligned_cols=15 Identities=13% Similarity=0.056 Sum_probs=13.5
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+|+|.|++|+|||
T Consensus 6 ~~~I~l~G~~GsGKs 20 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKG 20 (194)
T ss_dssp CEEEEEEESTTSSHH
T ss_pred CcEEEEECCCCCCHH
Confidence 358999999999999
No 344
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=51.27 E-value=4.7 Score=36.83 Aligned_cols=16 Identities=19% Similarity=0.092 Sum_probs=14.3
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+|+|+|..|+|||
T Consensus 5 ~~~~i~i~G~~GsGKS 20 (211)
T 3asz_A 5 KPFVIGIAGGTASGKT 20 (211)
T ss_dssp CCEEEEEEESTTSSHH
T ss_pred CcEEEEEECCCCCCHH
Confidence 4468999999999999
No 345
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=51.27 E-value=14 Score=40.49 Aligned_cols=49 Identities=12% Similarity=0.202 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhCCceEEEEEccCccCCC-----------CCCcceEEEEEEcCccCHHHHHHHH
Q 039519 84 TFDKVRRCLREEQVGIIGLYGMGGLLGA-----------PNDFDVVIWMVVSKDLQLEKIQERI 136 (647)
Q Consensus 84 ~~~~i~~~L~~~~~~vi~I~G~gGiGKT-----------~~~F~~~~wv~~s~~~~~~~~~~~i 136 (647)
..+.+...|... .+..|+|++|.||| .. ...+.++...+..+..+...+
T Consensus 194 Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~--~~~ILv~a~TN~AvD~i~erL 253 (646)
T 4b3f_X 194 QKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQ--GLKVLCCAPSNIAVDNLVERL 253 (646)
T ss_dssp HHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEcCchHHHHHHHHHH
Confidence 344555555433 36678999999999 11 234566655554555554444
No 346
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=51.00 E-value=4.6 Score=38.04 Aligned_cols=16 Identities=13% Similarity=-0.054 Sum_probs=14.3
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+|+|+|+.|+|||
T Consensus 26 ~~~~i~l~G~~GsGKS 41 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKG 41 (246)
T ss_dssp CCCEEEEECCTTSSHH
T ss_pred CCcEEEEECCCCCCHH
Confidence 3569999999999999
No 347
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=51.00 E-value=3.6 Score=36.14 Aligned_cols=14 Identities=21% Similarity=-0.002 Sum_probs=12.8
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
.+|.|.|+.|+|||
T Consensus 3 ~~I~l~G~~GsGKs 16 (173)
T 1e6c_A 3 EPIFMVGARGCGMT 16 (173)
T ss_dssp CCEEEESCTTSSHH
T ss_pred ceEEEECCCCCCHH
Confidence 46899999999999
No 348
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=50.99 E-value=4.6 Score=39.10 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=13.6
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
.++|+|.|.||+|||
T Consensus 2 MkvIavs~KGGvGKT 16 (289)
T 2afh_E 2 MRQCAIYGKGGIGKS 16 (289)
T ss_dssp CEEEEEEECTTSSHH
T ss_pred ceEEEEeCCCcCcHH
Confidence 478999999999999
No 349
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=50.98 E-value=4.5 Score=36.22 Aligned_cols=15 Identities=13% Similarity=-0.031 Sum_probs=13.5
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+|+|.|++|+|||
T Consensus 3 ~~~I~l~G~~GsGKs 17 (196)
T 1tev_A 3 PLVVFVLGGPGAGKG 17 (196)
T ss_dssp CEEEEEECCTTSSHH
T ss_pred ceEEEEECCCCCCHH
Confidence 357999999999999
No 350
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=50.83 E-value=4.8 Score=38.92 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=14.4
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+|+|.|+.|+|||
T Consensus 74 ~~~iI~I~G~~GSGKS 89 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKS 89 (281)
T ss_dssp TCEEEEEEECTTSCHH
T ss_pred CCEEEEEECCCCCCHH
Confidence 4568999999999999
No 351
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=50.60 E-value=4.5 Score=35.97 Aligned_cols=14 Identities=14% Similarity=0.045 Sum_probs=12.9
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
..|+|.|++|+|||
T Consensus 5 ~~I~l~G~~GsGKS 18 (186)
T 3cm0_A 5 QAVIFLGPPGAGKG 18 (186)
T ss_dssp EEEEEECCTTSCHH
T ss_pred eEEEEECCCCCCHH
Confidence 47899999999999
No 352
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=50.55 E-value=4.3 Score=36.65 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=12.3
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
.|+|.|+.|+|||
T Consensus 2 ~I~i~G~~GsGKs 14 (205)
T 2jaq_A 2 KIAIFGTVGAGKS 14 (205)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECCCccCHH
Confidence 6899999999999
No 353
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=50.48 E-value=4.4 Score=36.50 Aligned_cols=15 Identities=27% Similarity=0.109 Sum_probs=13.6
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+|+|.|++|+|||
T Consensus 12 ~~~I~l~G~~GsGKs 26 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKG 26 (199)
T ss_dssp SCEEEEEECTTSSHH
T ss_pred CCEEEEECCCCCCHH
Confidence 358999999999999
No 354
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=50.12 E-value=4.5 Score=35.28 Aligned_cols=13 Identities=23% Similarity=-0.072 Sum_probs=12.2
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
.|+|.|+.|+|||
T Consensus 2 ~I~l~G~~GsGKs 14 (168)
T 2pt5_A 2 RIYLIGFMCSGKS 14 (168)
T ss_dssp EEEEESCTTSCHH
T ss_pred eEEEECCCCCCHH
Confidence 5899999999999
No 355
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=49.92 E-value=8.2 Score=38.07 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=20.7
Q ss_pred cchHHHHHHHHHhhh----CCceEEEEEccCccCCC
Q 039519 80 GLESTFDKVRRCLRE----EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 80 Gr~~~~~~i~~~L~~----~~~~vi~I~G~gGiGKT 111 (647)
|-...+..+...+.. ....+|||.|..|+|||
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKS 106 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKS 106 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHH
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHH
Confidence 333444444444433 24559999999999999
No 356
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=49.39 E-value=4.9 Score=38.37 Aligned_cols=14 Identities=29% Similarity=0.669 Sum_probs=12.9
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
++|+|.|.||+|||
T Consensus 2 ~vI~vs~KGGvGKT 15 (269)
T 1cp2_A 2 RQVAIYGKGGIGKS 15 (269)
T ss_dssp EEEEEEECTTSSHH
T ss_pred cEEEEecCCCCcHH
Confidence 68888999999999
No 357
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=48.64 E-value=5.4 Score=39.10 Aligned_cols=16 Identities=13% Similarity=0.248 Sum_probs=14.5
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+|+|+|.+|+|||
T Consensus 101 ~g~vi~lvG~nGsGKT 116 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKT 116 (304)
T ss_dssp SSSEEEEECSTTSSHH
T ss_pred CCeEEEEECCCCCcHH
Confidence 3579999999999999
No 358
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=48.52 E-value=4.9 Score=35.93 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=12.3
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
+|+|.|+.|+|||
T Consensus 2 ~I~l~G~~GsGKs 14 (195)
T 2pbr_A 2 LIAFEGIDGSGKT 14 (195)
T ss_dssp EEEEECSTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 6899999999999
No 359
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=48.41 E-value=5.1 Score=36.45 Aligned_cols=16 Identities=6% Similarity=-0.201 Sum_probs=14.3
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+|+|+||+|+||+
T Consensus 10 ~~~II~itGk~~SGKd 25 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKD 25 (202)
T ss_dssp CSEEEEEEECTTSSHH
T ss_pred CCEEEEEECCCCCChH
Confidence 4569999999999999
No 360
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=48.09 E-value=5.1 Score=35.68 Aligned_cols=13 Identities=23% Similarity=0.125 Sum_probs=12.2
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
.++|+|..|+|||
T Consensus 2 ~i~l~G~nGsGKT 14 (178)
T 1ye8_A 2 KIIITGEPGVGKT 14 (178)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999999
No 361
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=47.99 E-value=7 Score=36.03 Aligned_cols=13 Identities=8% Similarity=0.010 Sum_probs=11.6
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
-|.|+|-+|+|||
T Consensus 15 KivlvGd~~VGKT 27 (216)
T 4dkx_A 15 KLVFLGEQSVGKT 27 (216)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECcCCcCHH
Confidence 4778999999999
No 362
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=47.58 E-value=5.1 Score=37.96 Aligned_cols=16 Identities=19% Similarity=0.140 Sum_probs=14.2
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+|+|+|+.|+|||
T Consensus 26 ~g~~I~I~G~~GsGKS 41 (252)
T 4e22_A 26 IAPVITVDGPSGAGKG 41 (252)
T ss_dssp TSCEEEEECCTTSSHH
T ss_pred CCcEEEEECCCCCCHH
Confidence 3469999999999999
No 363
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=47.54 E-value=5.2 Score=36.21 Aligned_cols=15 Identities=20% Similarity=-0.046 Sum_probs=13.4
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
...|.|.|++|+|||
T Consensus 20 ~~~I~l~G~~GsGKS 34 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKG 34 (201)
T ss_dssp CCEEEEECCTTSSHH
T ss_pred CeEEEEECCCCCCHH
Confidence 347999999999999
No 364
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=47.15 E-value=8.2 Score=39.91 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=27.0
Q ss_pred CCcccchHHHHHHHHHhhh--------------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE--------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~--------------~~~~vi~I~G~gGiGKT 111 (647)
..++|.++.++.+...+.. -..+-|.++|++|+|||
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT 64 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKT 64 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHH
Confidence 4578999888888766632 12355889999999999
No 365
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=46.96 E-value=5.4 Score=36.37 Aligned_cols=16 Identities=13% Similarity=0.038 Sum_probs=14.2
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
.-.+++|+|..|+|||
T Consensus 19 ~Gei~~l~GpnGsGKS 34 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKS 34 (207)
T ss_dssp CCCEEEEECSTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3469999999999999
No 366
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=46.93 E-value=5.9 Score=35.99 Aligned_cols=16 Identities=19% Similarity=0.179 Sum_probs=14.4
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
..++|+|+|..|+|||
T Consensus 18 ~g~~ivl~GPSGaGKs 33 (197)
T 3ney_A 18 GRKTLVLIGASGVGRS 33 (197)
T ss_dssp SCCEEEEECCTTSSHH
T ss_pred CCCEEEEECcCCCCHH
Confidence 4578999999999999
No 367
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=46.82 E-value=5.7 Score=35.99 Aligned_cols=31 Identities=13% Similarity=-0.032 Sum_probs=13.3
Q ss_pred chHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 81 LESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 81 r~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
++...+.+.+.......--|+|+|.+|+|||
T Consensus 14 ~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKS 44 (204)
T 4gzl_A 14 LVPRGSHMENLYFQGQAIKCVVVGDGAVGKT 44 (204)
T ss_dssp ----------------CEEEEEEESTTSSHH
T ss_pred cccchhHHHhHhhcCCeEEEEEECcCCCCHH
Confidence 3344444444444444557889999999999
No 368
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=46.81 E-value=10 Score=33.61 Aligned_cols=16 Identities=13% Similarity=-0.203 Sum_probs=14.0
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
....|+|+|.+|+|||
T Consensus 47 ~~~~i~vvG~~g~GKS 62 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKT 62 (193)
T ss_dssp CCCEEEEECCTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 4457899999999999
No 369
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=46.79 E-value=5.4 Score=36.67 Aligned_cols=15 Identities=27% Similarity=0.056 Sum_probs=13.6
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+|+|.|+.|+|||
T Consensus 4 ~~~I~i~G~~GSGKS 18 (218)
T 1vht_A 4 RYIVALTGGIGSGKS 18 (218)
T ss_dssp CEEEEEECCTTSCHH
T ss_pred ceEEEEECCCCCCHH
Confidence 358999999999999
No 370
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=46.74 E-value=11 Score=39.52 Aligned_cols=81 Identities=7% Similarity=0.089 Sum_probs=44.6
Q ss_pred ceEEEEEccCccCCC---------CCCcc-eEEEEEEcCcc-CHHHHHHHHHHHhCCCC-----cCCCC-----CCHHHH
Q 039519 97 VGIIGLYGMGGLLGA---------PNDFD-VVIWMVVSKDL-QLEKIQERIGRRIGFLD-----ESWKN-----GSLEDK 155 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT---------~~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~-----~~~~~~ 155 (647)
-.-++|+|-+|+||| ...-+ .++++-+++.. .+.++.+.+...=.... ...+. .-.-..
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~ 242 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYT 242 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHHH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHHHH
Confidence 346789999999999 22345 34677777764 45666666543211000 00010 001111
Q ss_pred HHHHHHHh--ccCCeeEEEecCCC
Q 039519 156 ASDIFRIL--SKKKLLLLLDDIWE 177 (647)
Q Consensus 156 ~~~l~~~l--~~~r~LlVlDdv~~ 177 (647)
.-.+.+++ +++.+|+++||+-.
T Consensus 243 a~tiAEyfrd~G~dVLli~Dsltr 266 (507)
T 1fx0_A 243 GAALAEYFMYRERHTLIIYDDLSK 266 (507)
T ss_dssp HHHHHHHHHHTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHcCCcEEEEEecHHH
Confidence 22233333 58999999999853
No 371
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=46.56 E-value=5.7 Score=36.08 Aligned_cols=14 Identities=21% Similarity=0.302 Sum_probs=13.1
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
..|.|.|++|+|||
T Consensus 5 ~~I~i~G~~GsGKs 18 (213)
T 2plr_A 5 VLIAFEGIDGSGKS 18 (213)
T ss_dssp EEEEEECCTTSSHH
T ss_pred eEEEEEcCCCCCHH
Confidence 57999999999999
No 372
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=46.45 E-value=4.6 Score=35.62 Aligned_cols=14 Identities=21% Similarity=0.071 Sum_probs=12.6
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
..|.|.|++|+|||
T Consensus 5 ~~i~i~G~~GsGKs 18 (175)
T 1via_A 5 KNIVFIGFMGSGKS 18 (175)
T ss_dssp CCEEEECCTTSCHH
T ss_pred CEEEEEcCCCCCHH
Confidence 35899999999999
No 373
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=46.44 E-value=6.2 Score=37.38 Aligned_cols=16 Identities=19% Similarity=0.129 Sum_probs=14.0
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...++.+.|.||+|||
T Consensus 13 ~~~i~~~~GkgGvGKT 28 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKT 28 (262)
T ss_dssp CCEEEEEECSTTSSHH
T ss_pred ceEEEEEeCCCCCCHH
Confidence 3568889999999999
No 374
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=46.35 E-value=39 Score=35.25 Aligned_cols=91 Identities=11% Similarity=0.057 Sum_probs=51.1
Q ss_pred HHHHHhhh-CCceEEEEEccCccCCC---------CCCcce-EEEEEEcCcc-CHHHHHHHHHHHhCCCCc----CCCCC
Q 039519 87 KVRRCLRE-EQVGIIGLYGMGGLLGA---------PNDFDV-VIWMVVSKDL-QLEKIQERIGRRIGFLDE----SWKNG 150 (647)
Q Consensus 87 ~i~~~L~~-~~~~vi~I~G~gGiGKT---------~~~F~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~ 150 (647)
+.++.|.- ..-.-++|+|-+|+||| ...-+. ++++-+++.. .+.++.+.+...=..... ...+.
T Consensus 151 raID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~ 230 (502)
T 2qe7_A 151 KAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKGQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASE 230 (502)
T ss_dssp HHHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTS
T ss_pred eecccccccccCCEEEEECCCCCCchHHHHHHHHHhhcCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCC
Confidence 34454442 33457899999999999 223453 4667777764 466777777653211100 00111
Q ss_pred CHHHH------HHHHHHHh--ccCCeeEEEecCCC
Q 039519 151 SLEDK------ASDIFRIL--SKKKLLLLLDDIWE 177 (647)
Q Consensus 151 ~~~~~------~~~l~~~l--~~~r~LlVlDdv~~ 177 (647)
..... .-.+.+++ +++.+|+++||+-.
T Consensus 231 p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 231 PAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 11111 12344444 47999999999964
No 375
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=45.84 E-value=6 Score=34.98 Aligned_cols=15 Identities=20% Similarity=0.127 Sum_probs=13.5
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+|+|.|+.|+|||
T Consensus 5 g~~i~l~G~~GsGKS 19 (179)
T 2pez_A 5 GCTVWLTGLSGAGKT 19 (179)
T ss_dssp CEEEEEECCTTSSHH
T ss_pred CcEEEEECCCCCCHH
Confidence 458899999999999
No 376
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=45.71 E-value=6.4 Score=36.38 Aligned_cols=16 Identities=19% Similarity=0.110 Sum_probs=14.7
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
..++|.|.|++|+||+
T Consensus 28 k~kiI~llGpPGsGKg 43 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKG 43 (217)
T ss_dssp SCEEEEEECCTTCCHH
T ss_pred CCcEEEEECCCCCCHH
Confidence 5689999999999998
No 377
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=45.68 E-value=4.8 Score=37.17 Aligned_cols=16 Identities=13% Similarity=0.148 Sum_probs=14.1
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
.-.+++|+|..|+|||
T Consensus 22 ~G~~~~lvGpsGsGKS 37 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKG 37 (218)
T ss_dssp CCCCEEEECSTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3468999999999999
No 378
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=45.64 E-value=39 Score=35.33 Aligned_cols=90 Identities=11% Similarity=0.098 Sum_probs=51.0
Q ss_pred HHHHHhhh-CCceEEEEEccCccCCC---------CCCcce-EEEEEEcCcc-CHHHHHHHHHHHhCCCC-----cCCCC
Q 039519 87 KVRRCLRE-EQVGIIGLYGMGGLLGA---------PNDFDV-VIWMVVSKDL-QLEKIQERIGRRIGFLD-----ESWKN 149 (647)
Q Consensus 87 ~i~~~L~~-~~~~vi~I~G~gGiGKT---------~~~F~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~ 149 (647)
+.++.|.- ..-.-++|+|-+|+||| ...-+. ++++-+++.. .+.++.+.+...=.... .. .+
T Consensus 164 raID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~at-ad 242 (515)
T 2r9v_A 164 KAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVAS-AS 242 (515)
T ss_dssp HHHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTTTTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEEC-TT
T ss_pred cccccccccccCCEEEEEcCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEEC-CC
Confidence 34444442 33457899999999999 233453 4677777764 46677777764311100 00 11
Q ss_pred CCHHHH------HHHHHHHh--ccCCeeEEEecCCC
Q 039519 150 GSLEDK------ASDIFRIL--SKKKLLLLLDDIWE 177 (647)
Q Consensus 150 ~~~~~~------~~~l~~~l--~~~r~LlVlDdv~~ 177 (647)
...... .-.+.+++ +++.+|+++||+-.
T Consensus 243 ~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 243 DPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 111111 12344444 47999999999964
No 379
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=45.42 E-value=7.5 Score=40.20 Aligned_cols=15 Identities=27% Similarity=0.273 Sum_probs=13.8
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+|+|+|.+|+|||
T Consensus 99 ~~vI~ivG~~GvGKT 113 (432)
T 2v3c_C 99 QNVILLVGIQGSGKT 113 (432)
T ss_dssp CCCEEEECCSSSSTT
T ss_pred CeEEEEECCCCCCHH
Confidence 468999999999999
No 380
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=45.41 E-value=9.6 Score=42.72 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=28.5
Q ss_pred CCcccchHHHHHHHHHhhhC---------CceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREE---------QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~---------~~~vi~I~G~gGiGKT 111 (647)
..++|.+..++.+...+... ....+-++|.+|+|||
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT 535 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKT 535 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHH
Confidence 45789999998888877631 1236899999999999
No 381
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=45.37 E-value=8.7 Score=35.16 Aligned_cols=14 Identities=21% Similarity=0.019 Sum_probs=13.2
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
.+++|+|..|+|||
T Consensus 23 e~~~liG~nGsGKS 36 (208)
T 3b85_A 23 TIVFGLGPAGSGKT 36 (208)
T ss_dssp SEEEEECCTTSSTT
T ss_pred CEEEEECCCCCCHH
Confidence 58999999999999
No 382
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=45.27 E-value=28 Score=43.11 Aligned_cols=77 Identities=10% Similarity=0.079 Sum_probs=51.8
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcCC---CCCCHHHHHHHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDESW---KNGSLEDKASDIFRI 162 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~ 162 (647)
.-+++-|.|.+|+||| ...=..++|++....++... ++.++.+.+.. +..+.++....+++.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~l 456 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHHH
Confidence 4579999999999999 11113688888887776542 55666543221 345667777777665
Q ss_pred hc-cCCeeEEEecCCC
Q 039519 163 LS-KKKLLLLLDDIWE 177 (647)
Q Consensus 163 l~-~~r~LlVlDdv~~ 177 (647)
.+ ...-+||+|-+..
T Consensus 457 v~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 457 ARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHTCCSEEEESCGGG
T ss_pred HHhcCCcEEEECCHHH
Confidence 53 4566999999864
No 383
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=45.13 E-value=6.3 Score=34.99 Aligned_cols=15 Identities=7% Similarity=0.173 Sum_probs=13.9
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+++|+|..|+|||
T Consensus 6 ~~~i~i~G~sGsGKT 20 (174)
T 1np6_A 6 IPLLAFAAWSGTGKT 20 (174)
T ss_dssp CCEEEEECCTTSCHH
T ss_pred ceEEEEEeCCCCCHH
Confidence 578999999999999
No 384
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=44.93 E-value=6.5 Score=35.83 Aligned_cols=15 Identities=20% Similarity=0.085 Sum_probs=13.7
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+|+|.|+.|+|||
T Consensus 9 ~~~I~l~G~~GsGKs 23 (215)
T 1nn5_A 9 GALIVLEGVDRAGKS 23 (215)
T ss_dssp CCEEEEEESTTSSHH
T ss_pred CcEEEEECCCCCCHH
Confidence 468999999999999
No 385
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=44.86 E-value=6.5 Score=35.74 Aligned_cols=15 Identities=13% Similarity=-0.028 Sum_probs=13.7
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+|+|.|+.|+|||
T Consensus 10 ~~~I~l~G~~GsGKS 24 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKS 24 (212)
T ss_dssp SCEEEEEESTTSSHH
T ss_pred CCEEEEEcCCCCCHH
Confidence 458999999999999
No 386
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=44.84 E-value=6.8 Score=39.20 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=16.6
Q ss_pred hhhCCceEEEEEccCccCCC
Q 039519 92 LREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 92 L~~~~~~vi~I~G~gGiGKT 111 (647)
+.....+++.+.|.||+|||
T Consensus 13 l~~~~~~i~~~~gkGGvGKT 32 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKT 32 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHH
T ss_pred hcCCCcEEEEEeCCCCCcHH
Confidence 44456789999999999999
No 387
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=44.69 E-value=6.3 Score=37.36 Aligned_cols=14 Identities=14% Similarity=-0.081 Sum_probs=13.0
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
.+|.|.|++|+|||
T Consensus 2 ~li~I~G~~GSGKS 15 (253)
T 2ze6_A 2 LLHLIYGPTCSGKT 15 (253)
T ss_dssp EEEEEECCTTSSHH
T ss_pred eEEEEECCCCcCHH
Confidence 47899999999999
No 388
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=44.57 E-value=8.6 Score=37.31 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=11.3
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
+..+|+|.|..|+|||
T Consensus 4 ~~~iIgItG~sGSGKS 19 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTS 19 (290)
T ss_dssp TSCEEEEESCC---CC
T ss_pred CceEEEEECCCCCCHH
Confidence 4568999999999999
No 389
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=44.30 E-value=7.1 Score=38.54 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=14.3
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+|+|+|.+|+|||
T Consensus 104 ~~~vI~ivG~~G~GKT 119 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKT 119 (320)
T ss_dssp SCEEEEEESSTTSSHH
T ss_pred CCeEEEEECCCCCCHH
Confidence 3569999999999999
No 390
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=44.27 E-value=6.4 Score=36.47 Aligned_cols=15 Identities=13% Similarity=-0.057 Sum_probs=13.5
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
...|.|.|++|+|||
T Consensus 7 ~~~I~l~G~~GsGKs 21 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKG 21 (227)
T ss_dssp CCEEEEEECTTSSHH
T ss_pred CcEEEEECCCCCCHH
Confidence 357999999999999
No 391
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=44.18 E-value=6.3 Score=36.46 Aligned_cols=16 Identities=13% Similarity=-0.095 Sum_probs=14.2
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
.-.+++|+|..|+|||
T Consensus 15 ~G~ii~l~GpsGsGKS 30 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKS 30 (219)
T ss_dssp CCCEEEEECCTTSCHH
T ss_pred CCcEEEEECCCCCCHH
Confidence 3468999999999999
No 392
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=44.16 E-value=16 Score=36.17 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=16.1
Q ss_pred hhhCCceEEEEEccCccCCC
Q 039519 92 LREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 92 L~~~~~~vi~I~G~gGiGKT 111 (647)
+.....+++.+.|.||+|||
T Consensus 11 l~~~~~~i~~~sgkGGvGKT 30 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKT 30 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHH
T ss_pred hcCCCeEEEEEeCCCCccHH
Confidence 34445678888999999999
No 393
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=44.06 E-value=24 Score=42.89 Aligned_cols=78 Identities=10% Similarity=0.075 Sum_probs=52.5
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcCC---CCCCHHHHHHHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDESW---KNGSLEDKASDIFRI 162 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~ 162 (647)
.-+++-|.|.+|+||| ...=..++|++...+++.. .++.++.+.+.. +..+.++....++..
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~~l 456 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHHHH
Confidence 4579999999999999 1112468899888877754 255666543221 345667777777665
Q ss_pred hc-cCCeeEEEecCCCc
Q 039519 163 LS-KKKLLLLLDDIWER 178 (647)
Q Consensus 163 l~-~~r~LlVlDdv~~~ 178 (647)
.+ .+.-+||+|-+...
T Consensus 457 v~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 457 ARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHTCCSEEEESCSTTC
T ss_pred HHhcCCCEEEECCHHHh
Confidence 54 35569999998643
No 394
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=44.02 E-value=6.4 Score=35.53 Aligned_cols=15 Identities=13% Similarity=0.034 Sum_probs=13.5
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
...|+|.|+.|+|||
T Consensus 4 ~~~I~l~G~~GsGKs 18 (204)
T 2v54_A 4 GALIVFEGLDKSGKT 18 (204)
T ss_dssp CCEEEEECCTTSSHH
T ss_pred CcEEEEEcCCCCCHH
Confidence 357999999999999
No 395
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=43.99 E-value=5.3 Score=37.88 Aligned_cols=15 Identities=27% Similarity=0.053 Sum_probs=13.6
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+|+|+|+.|+|||
T Consensus 48 g~~i~l~G~~GsGKS 62 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKT 62 (250)
T ss_dssp TCCEEEECSTTSCHH
T ss_pred CCEEEEECCCCCCHH
Confidence 358999999999999
No 396
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=43.95 E-value=9.6 Score=42.98 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=27.0
Q ss_pred CCcccchHHHHHHHHHhhh-------------CCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE-------------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~-------------~~~~vi~I~G~gGiGKT 111 (647)
..++|.++.++++.+.+.. ...+.+.++|.+|+|||
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT 525 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKT 525 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHH
Confidence 4567888888888876642 12345789999999999
No 397
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=43.90 E-value=6.5 Score=34.11 Aligned_cols=14 Identities=21% Similarity=0.043 Sum_probs=12.8
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
..|+|+|.+|+|||
T Consensus 4 ~~v~lvG~~gvGKS 17 (165)
T 2wji_A 4 YEIALIGNPNVGKS 17 (165)
T ss_dssp EEEEEECSTTSSHH
T ss_pred cEEEEECCCCCCHH
Confidence 46899999999999
No 398
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=43.84 E-value=13 Score=38.70 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=17.8
Q ss_pred HHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 85 FDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 85 ~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
++.+...+.+.+ +.+.|.|.+|+|||
T Consensus 34 v~~~~~~i~~~~-~~~li~G~aGTGKT 59 (459)
T 3upu_A 34 FNIVMKAIKEKK-HHVTINGPAGTGAT 59 (459)
T ss_dssp HHHHHHHHHSSS-CEEEEECCTTSCHH
T ss_pred HHHHHHHHhcCC-CEEEEEeCCCCCHH
Confidence 334444444333 48999999999999
No 399
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=43.67 E-value=21 Score=37.30 Aligned_cols=89 Identities=10% Similarity=0.144 Sum_probs=50.8
Q ss_pred HHHHhhh-CCceEEEEEccCccCCC---------CCCcce-EEEEEEcCcc-CHHHHHHHHHHHhCCCCcCC-----CCC
Q 039519 88 VRRCLRE-EQVGIIGLYGMGGLLGA---------PNDFDV-VIWMVVSKDL-QLEKIQERIGRRIGFLDESW-----KNG 150 (647)
Q Consensus 88 i~~~L~~-~~~~vi~I~G~gGiGKT---------~~~F~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~-----~~~ 150 (647)
.++.|.- ..-.-++|.|-.|+||| ...-+. ++++-+++.. .+.++.+.+... +...... .+.
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~~~dv~~V~~~IGeR~~ev~e~~~~l~~~-g~m~~tvvV~atad~ 230 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEH-GALANTIVVVATASE 230 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTSSSSCEEEEEEESCCHHHHHHHHHHHHHH-SCSTTEEEEEECTTS
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhccCCceEEEEEecCChHHHHHHHHHHhhc-CcccceEEEEECCCC
Confidence 3444442 33457899999999999 333343 5677788764 467777776554 2111100 111
Q ss_pred CHHHH------HHHHHHHh--ccCCeeEEEecCCC
Q 039519 151 SLEDK------ASDIFRIL--SKKKLLLLLDDIWE 177 (647)
Q Consensus 151 ~~~~~------~~~l~~~l--~~~r~LlVlDdv~~ 177 (647)
..... .-.+.+++ +++.+||++||+-.
T Consensus 231 p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 231 SAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 11111 11233333 57999999999964
No 400
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=43.27 E-value=7.4 Score=38.04 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=13.9
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+++|+|..|+|||
T Consensus 100 g~vi~lvG~nGsGKT 114 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKT 114 (302)
T ss_dssp CEEEEEECCTTSCHH
T ss_pred CcEEEEEcCCCCCHH
Confidence 469999999999999
No 401
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=43.26 E-value=7.2 Score=35.85 Aligned_cols=15 Identities=20% Similarity=-0.051 Sum_probs=13.4
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
...|.|.|++|+|||
T Consensus 4 ~~~I~l~G~~GsGKs 18 (220)
T 1aky_A 4 SIRMVLIGPPGAGKG 18 (220)
T ss_dssp CCEEEEECCTTSSHH
T ss_pred CcEEEEECCCCCCHH
Confidence 357899999999999
No 402
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=42.98 E-value=6.8 Score=35.48 Aligned_cols=13 Identities=15% Similarity=0.120 Sum_probs=12.6
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
+|+|.|..|+|||
T Consensus 4 ~i~i~G~~GsGKs 16 (208)
T 3ake_A 4 IVTIDGPSASGKS 16 (208)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 8999999999999
No 403
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=42.63 E-value=13 Score=38.85 Aligned_cols=16 Identities=19% Similarity=0.196 Sum_probs=14.4
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+|+|+|..|+|||
T Consensus 292 ~GeVI~LVGpNGSGKT 307 (503)
T 2yhs_A 292 APFVILMVGVNGVGKT 307 (503)
T ss_dssp TTEEEEEECCTTSSHH
T ss_pred CCeEEEEECCCcccHH
Confidence 3569999999999999
No 404
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=42.33 E-value=14 Score=36.95 Aligned_cols=15 Identities=27% Similarity=0.177 Sum_probs=14.2
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+|+|+|.+|+|||
T Consensus 74 ~~~v~lvG~pgaGKS 88 (349)
T 2www_A 74 AFRVGLSGPPGAGKS 88 (349)
T ss_dssp CEEEEEECCTTSSHH
T ss_pred ceEEEEEcCCCCCHH
Confidence 679999999999999
No 405
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=42.23 E-value=5.9 Score=35.70 Aligned_cols=14 Identities=21% Similarity=0.071 Sum_probs=12.7
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
.+++|+|..|+|||
T Consensus 2 ~~i~i~G~nG~GKT 15 (189)
T 2i3b_A 2 RHVFLTGPPGVGKT 15 (189)
T ss_dssp CCEEEESCCSSCHH
T ss_pred CEEEEECCCCChHH
Confidence 36899999999999
No 406
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=42.21 E-value=8.1 Score=37.95 Aligned_cols=17 Identities=24% Similarity=0.100 Sum_probs=15.0
Q ss_pred CCceEEEEEccCccCCC
Q 039519 95 EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 95 ~~~~vi~I~G~gGiGKT 111 (647)
....+|+|.|..|+|||
T Consensus 88 ~~g~ivgI~G~sGsGKS 104 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKS 104 (312)
T ss_dssp CCCEEEEEECCTTSCHH
T ss_pred CCCEEEEEECCCCchHH
Confidence 34579999999999999
No 407
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=42.16 E-value=27 Score=42.49 Aligned_cols=76 Identities=11% Similarity=0.086 Sum_probs=56.6
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHHHHHHhCCCCcCC---CCCCHHHHHHHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQERIGRRIGFLDESW---KNGSLEDKASDIFRI 162 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~ 162 (647)
.-++|-|+|..|+||| ...=..++|+++.+..+... ++.++.+.+.. ++..-++....+...
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~ 1504 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 1504 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHHH
Confidence 4579999999999999 22235688999888877664 77777765432 456668888888888
Q ss_pred hcc-CCeeEEEecCC
Q 039519 163 LSK-KKLLLLLDDIW 176 (647)
Q Consensus 163 l~~-~r~LlVlDdv~ 176 (647)
++. .--+||+|-|.
T Consensus 1505 ~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1505 ARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHTCCSEEEESCST
T ss_pred HHcCCCCEEEEccHH
Confidence 865 55688889884
No 408
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=42.01 E-value=7.2 Score=34.93 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=12.3
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
.|+|.|..|+|||
T Consensus 2 ~I~l~G~~GsGKs 14 (197)
T 2z0h_A 2 FITFEGIDGSGKS 14 (197)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 6899999999999
No 409
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=41.92 E-value=9 Score=33.60 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=14.6
Q ss_pred CCceEEEEEccCccCCC
Q 039519 95 EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 95 ~~~~vi~I~G~gGiGKT 111 (647)
....-|+|+|.+|+|||
T Consensus 16 ~~~~~i~v~G~~~~GKs 32 (183)
T 1moz_A 16 NKELRILILGLDGAGKT 32 (183)
T ss_dssp SSCEEEEEEEETTSSHH
T ss_pred CCccEEEEECCCCCCHH
Confidence 45567889999999999
No 410
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=41.89 E-value=7.8 Score=33.05 Aligned_cols=14 Identities=7% Similarity=-0.019 Sum_probs=12.7
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
.-|.|+|.+|+|||
T Consensus 2 ~ki~v~G~~~~GKS 15 (161)
T 2dyk_A 2 HKVVIVGRPNVGKS 15 (161)
T ss_dssp EEEEEECCTTSSHH
T ss_pred CEEEEECCCCCCHH
Confidence 46889999999999
No 411
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=41.82 E-value=45 Score=34.98 Aligned_cols=41 Identities=12% Similarity=0.038 Sum_probs=27.4
Q ss_pred ceEEEEEccCccCCC----------CCC-cceEEEEEEcCccCHHHHHHHHHHH
Q 039519 97 VGIIGLYGMGGLLGA----------PND-FDVVIWMVVSKDLQLEKIQERIGRR 139 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT----------~~~-F~~~~wv~~s~~~~~~~~~~~i~~~ 139 (647)
-.++.|.|.+|+||| ... =..++|++... +..++...++..
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC--CHHHHHHHHHHH
Confidence 458899999999999 222 23567776644 456676666544
No 412
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=41.70 E-value=7.3 Score=35.64 Aligned_cols=13 Identities=31% Similarity=0.256 Sum_probs=11.9
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
.|+|.|++|+|||
T Consensus 2 ~I~l~G~~GsGKs 14 (216)
T 3fb4_A 2 NIVLMGLPGAGKG 14 (216)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4789999999999
No 413
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=41.57 E-value=8.6 Score=36.11 Aligned_cols=16 Identities=19% Similarity=0.081 Sum_probs=14.4
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+|||.|..|+|||
T Consensus 24 ~g~iigI~G~~GsGKS 39 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKS 39 (245)
T ss_dssp CSEEEEEECSTTSSHH
T ss_pred CCEEEEEECCCCCCHH
Confidence 4569999999999999
No 414
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=41.56 E-value=12 Score=38.41 Aligned_cols=16 Identities=19% Similarity=0.075 Sum_probs=14.5
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+++|+|..|+|||
T Consensus 68 ~~~~valvG~nGaGKS 83 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKS 83 (413)
T ss_dssp CCEEEEEEECTTSSHH
T ss_pred CCeEEEEECCCCCcHH
Confidence 4569999999999999
No 415
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=41.52 E-value=59 Score=33.44 Aligned_cols=42 Identities=5% Similarity=-0.152 Sum_probs=27.8
Q ss_pred CceEEEEEccCccCCC-----------CCCcceEEEEEEcCccCHHHHHHHHHHH
Q 039519 96 QVGIIGLYGMGGLLGA-----------PNDFDVVIWMVVSKDLQLEKIQERIGRR 139 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT-----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 139 (647)
.-.++.|.|.+|+||| ...=..++|++.. .+...+...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC--CCHHHHHHHHHHH
Confidence 3468999999999999 2111256776654 4556677666544
No 416
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=41.34 E-value=14 Score=32.64 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=18.4
Q ss_pred HHHHHHhhhCCceEEEEEccCccCCC
Q 039519 86 DKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 86 ~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
..+.+ +......-|+|+|.+|+|||
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKs 30 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKT 30 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHH
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHH
Confidence 34455 44455567899999999999
No 417
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=41.20 E-value=8 Score=41.90 Aligned_cols=36 Identities=14% Similarity=-0.031 Sum_probs=25.0
Q ss_pred CCcccchHHHHHHHHHhhhCCce-----------EEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVG-----------IIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~-----------vi~I~G~gGiGKT 111 (647)
+.++|.+..+..+.-.+..+..+ -|-++|.+|+|||
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT 341 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKS 341 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHH
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHH
Confidence 56789988666665444433211 4779999999999
No 418
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=41.16 E-value=4.9 Score=36.68 Aligned_cols=14 Identities=21% Similarity=0.275 Sum_probs=12.8
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
.+|+|.|..|+|||
T Consensus 1 ~~I~i~G~~GsGKs 14 (214)
T 1gtv_A 1 MLIAIEGVDGAGKR 14 (214)
T ss_dssp CEEEEEEEEEEEHH
T ss_pred CEEEEEcCCCCCHH
Confidence 37899999999999
No 419
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=41.09 E-value=4.9 Score=35.55 Aligned_cols=14 Identities=14% Similarity=0.097 Sum_probs=13.2
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
.+++|+|..|+|||
T Consensus 3 ~~v~IvG~SGsGKS 16 (171)
T 2f1r_A 3 LILSIVGTSDSGKT 16 (171)
T ss_dssp CEEEEEESCHHHHH
T ss_pred eEEEEECCCCCCHH
Confidence 58999999999999
No 420
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=41.07 E-value=7.9 Score=35.37 Aligned_cols=17 Identities=18% Similarity=0.018 Sum_probs=14.8
Q ss_pred CCceEEEEEccCccCCC
Q 039519 95 EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 95 ~~~~vi~I~G~gGiGKT 111 (647)
....+|.|.|+.|+|||
T Consensus 23 ~~~~~i~~~G~~GsGKs 39 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKS 39 (211)
T ss_dssp SSCEEEEEECSTTSSHH
T ss_pred CCCCEEEEECCCCCCHH
Confidence 44578999999999999
No 421
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=40.97 E-value=7.6 Score=35.54 Aligned_cols=13 Identities=23% Similarity=0.225 Sum_probs=11.9
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
.|+|.|++|+|||
T Consensus 2 ~I~l~G~~GsGKs 14 (216)
T 3dl0_A 2 NLVLMGLPGAGKG 14 (216)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4789999999999
No 422
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=40.89 E-value=7 Score=34.62 Aligned_cols=13 Identities=15% Similarity=0.049 Sum_probs=12.0
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
-|+|+|.+|+|||
T Consensus 4 kv~ivG~~gvGKS 16 (184)
T 2zej_A 4 KLMIVGNTGSGKT 16 (184)
T ss_dssp EEEEESCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4789999999999
No 423
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=40.59 E-value=7.7 Score=36.26 Aligned_cols=16 Identities=19% Similarity=0.001 Sum_probs=14.3
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
.-.+++|+|..|+|||
T Consensus 29 ~G~~~~l~GpnGsGKS 44 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKT 44 (251)
T ss_dssp TTCEEEEECCTTSSHH
T ss_pred CCcEEEEEeCCCCCHH
Confidence 3469999999999999
No 424
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=40.18 E-value=13 Score=40.47 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=28.0
Q ss_pred CCcccchHHHHHHHHHhhhCCceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
..++|.+..++.+...+..+ ..+.|+|.+|+|||
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKT 74 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKS 74 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHH
T ss_pred ceEECchhhHhhccccccCC--CEEEEEeCCCCCHH
Confidence 44689988888877777655 48899999999999
No 425
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=39.93 E-value=7.9 Score=34.60 Aligned_cols=15 Identities=20% Similarity=0.126 Sum_probs=13.5
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
.-.|+|+|.+|+|||
T Consensus 29 ~~kv~lvG~~g~GKS 43 (191)
T 1oix_A 29 LFKVVLIGDSGVGKS 43 (191)
T ss_dssp EEEEEEEECTTSSHH
T ss_pred ceEEEEECcCCCCHH
Confidence 457899999999999
No 426
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=39.70 E-value=11 Score=37.17 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=14.6
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
.+.+++|+|+.|+|||
T Consensus 3 ~i~v~~i~G~~GaGKT 18 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKT 18 (318)
T ss_dssp CEEEEEEEESSSSSCH
T ss_pred cccEEEEEecCCCCHH
Confidence 4679999999999999
No 427
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=39.67 E-value=16 Score=36.80 Aligned_cols=32 Identities=9% Similarity=0.302 Sum_probs=22.1
Q ss_pred cchHHHHHHHHHhhh------------CCceEEEEEc-cCccCCC
Q 039519 80 GLESTFDKVRRCLRE------------EQVGIIGLYG-MGGLLGA 111 (647)
Q Consensus 80 Gr~~~~~~i~~~L~~------------~~~~vi~I~G-~gGiGKT 111 (647)
.-++.+.++.+...+ .+.++|+|+| .||+|||
T Consensus 114 ~~~~i~~ei~~~~~e~~~~~~~~~~~~~~~kvIav~s~KGGvGKT 158 (373)
T 3fkq_A 114 RVDVIFKQILGVYSDMAANVATISGENDKSSVVIFTSPCGGVGTS 158 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCCCCTTSCEEEEEECSSTTSSHH
T ss_pred CHHHHHHHHHHHHhhcccccccccccCCCceEEEEECCCCCChHH
Confidence 345556666665421 3578999985 9999999
No 428
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=39.56 E-value=11 Score=42.84 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=27.5
Q ss_pred CcccchHHHHHHHHHhhhC---------CceEEEEEccCccCCC
Q 039519 77 PTVGLESTFDKVRRCLREE---------QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 77 ~~vGr~~~~~~i~~~L~~~---------~~~vi~I~G~gGiGKT 111 (647)
.++|.+..++.+...+... ....+.|+|.+|+|||
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT 602 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKT 602 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHH
Confidence 3589999888888777531 1357899999999999
No 429
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=39.46 E-value=8.2 Score=36.10 Aligned_cols=16 Identities=13% Similarity=0.198 Sum_probs=14.2
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
.-.+++|+|..|+|||
T Consensus 30 ~Ge~~~iiG~nGsGKS 45 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKS 45 (235)
T ss_dssp TTCEEEEECSTTSSHH
T ss_pred CCCEEEEECCCCCcHH
Confidence 3468999999999999
No 430
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=39.41 E-value=9.4 Score=37.37 Aligned_cols=17 Identities=18% Similarity=0.032 Sum_probs=15.0
Q ss_pred CCceEEEEEccCccCCC
Q 039519 95 EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 95 ~~~~vi~I~G~gGiGKT 111 (647)
....+|||+|..|+|||
T Consensus 78 ~~g~iigI~G~~GsGKS 94 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKS 94 (308)
T ss_dssp CCCEEEEEEECTTSSHH
T ss_pred CCCEEEEEECCCCCCHH
Confidence 34579999999999999
No 431
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=39.21 E-value=7.5 Score=35.82 Aligned_cols=15 Identities=7% Similarity=-0.221 Sum_probs=13.3
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
...|.|.|++|+|||
T Consensus 5 ~~~I~l~G~~GsGKs 19 (222)
T 1zak_A 5 PLKVMISGAPASGKG 19 (222)
T ss_dssp SCCEEEEESTTSSHH
T ss_pred CeEEEEECCCCCCHH
Confidence 357899999999999
No 432
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=39.13 E-value=18 Score=40.47 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=28.2
Q ss_pred CCcccchHHHHHHHHHhhh--C-------CceEEEEEccCccCCC
Q 039519 76 EPTVGLESTFDKVRRCLRE--E-------QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 76 ~~~vGr~~~~~~i~~~L~~--~-------~~~vi~I~G~gGiGKT 111 (647)
..++|.+..++.+...+.. . ....+.++|.+|+|||
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT 502 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKT 502 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHH
Confidence 4578999999888877653 1 2347889999999999
No 433
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=39.13 E-value=9 Score=33.31 Aligned_cols=17 Identities=24% Similarity=0.092 Sum_probs=14.8
Q ss_pred CCceEEEEEccCccCCC
Q 039519 95 EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 95 ~~~~vi~I~G~gGiGKT 111 (647)
..-.+++|.|..|.|||
T Consensus 31 ~~Ge~v~L~G~nGaGKT 47 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKT 47 (158)
T ss_dssp SSCEEEEEECSTTSSHH
T ss_pred CCCCEEEEECCCCCCHH
Confidence 34569999999999999
No 434
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=38.86 E-value=9.2 Score=37.21 Aligned_cols=15 Identities=20% Similarity=0.115 Sum_probs=13.9
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+++|+|.+|+|||
T Consensus 98 ~~~i~i~g~~G~GKT 112 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKT 112 (295)
T ss_dssp SEEEEEECCTTTTHH
T ss_pred CeEEEEECCCCCCHH
Confidence 569999999999999
No 435
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=38.83 E-value=7.9 Score=34.79 Aligned_cols=14 Identities=21% Similarity=0.093 Sum_probs=12.8
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
-.|+|+|.+|+|||
T Consensus 6 ~kv~lvG~~g~GKS 19 (199)
T 2f9l_A 6 FKVVLIGDSGVGKS 19 (199)
T ss_dssp EEEEEESSTTSSHH
T ss_pred EEEEEECcCCCCHH
Confidence 46899999999999
No 436
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=38.73 E-value=8.5 Score=35.70 Aligned_cols=16 Identities=13% Similarity=0.219 Sum_probs=14.1
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
.-.+++|+|..|+|||
T Consensus 29 ~Ge~~~iiG~nGsGKS 44 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKS 44 (224)
T ss_dssp TTCEEEEEECTTSCHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3468999999999999
No 437
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=38.72 E-value=9.3 Score=35.90 Aligned_cols=16 Identities=19% Similarity=0.081 Sum_probs=14.6
Q ss_pred CCceEEEEEccCccCCC
Q 039519 95 EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 95 ~~~~vi~I~G~gGiGKT 111 (647)
.. .+++|+|..|+|||
T Consensus 23 ~~-e~~~liG~nGsGKS 38 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKS 38 (240)
T ss_dssp CS-SEEEEECCTTSSHH
T ss_pred CC-EEEEEECCCCCCHH
Confidence 35 79999999999999
No 438
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=38.61 E-value=8.8 Score=35.29 Aligned_cols=16 Identities=19% Similarity=0.158 Sum_probs=14.3
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
.-.+++|+|.+|+|||
T Consensus 24 ~G~~~~l~G~nGsGKS 39 (231)
T 4a74_A 24 TQAITEVFGEFGSGKT 39 (231)
T ss_dssp SSEEEEEEESTTSSHH
T ss_pred CCcEEEEECCCCCCHH
Confidence 3469999999999999
No 439
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=38.51 E-value=8.1 Score=33.32 Aligned_cols=14 Identities=21% Similarity=0.102 Sum_probs=12.4
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
--|+|+|.+|+|||
T Consensus 3 ~ki~ivG~~~~GKS 16 (169)
T 3q85_A 3 FKVMLVGESGVGKS 16 (169)
T ss_dssp EEEEEECSTTSSHH
T ss_pred EEEEEECCCCCCHH
Confidence 35789999999999
No 440
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=38.29 E-value=8.9 Score=33.86 Aligned_cols=14 Identities=21% Similarity=0.043 Sum_probs=12.8
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
..|+|+|.+|+|||
T Consensus 8 ~~i~lvG~~gvGKS 21 (188)
T 2wjg_A 8 YEIALIGNPNVGKS 21 (188)
T ss_dssp EEEEEECSTTSSHH
T ss_pred CEEEEECCCCCCHH
Confidence 46899999999999
No 441
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=38.25 E-value=8.1 Score=33.20 Aligned_cols=13 Identities=23% Similarity=0.230 Sum_probs=11.9
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
-|+|+|.+|+|||
T Consensus 4 ki~~vG~~~~GKS 16 (166)
T 3q72_A 4 KVLLLGAPGVGKS 16 (166)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4789999999999
No 442
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=38.14 E-value=8.2 Score=32.96 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=11.9
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
-|.++|.+|+|||
T Consensus 5 ~i~v~G~~~~GKs 17 (166)
T 2ce2_X 5 KLVVVGAGGVGKS 17 (166)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4789999999999
No 443
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=38.06 E-value=10 Score=38.11 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=13.9
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+|+|+|..|+|||
T Consensus 157 g~vi~lvG~nGsGKT 171 (359)
T 2og2_A 157 PAVIMIVGVNGGGKT 171 (359)
T ss_dssp SEEEEEECCTTSCHH
T ss_pred CeEEEEEcCCCChHH
Confidence 469999999999999
No 444
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=38.01 E-value=8.4 Score=33.11 Aligned_cols=14 Identities=14% Similarity=0.055 Sum_probs=12.4
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
--|.|+|.+|+|||
T Consensus 6 ~~i~v~G~~~~GKs 19 (168)
T 1z2a_A 6 IKMVVVGNGAVGKS 19 (168)
T ss_dssp EEEEEECSTTSSHH
T ss_pred EEEEEECcCCCCHH
Confidence 35789999999999
No 445
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=37.91 E-value=8.4 Score=33.43 Aligned_cols=14 Identities=21% Similarity=0.071 Sum_probs=12.6
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
--|+|+|.+|+|||
T Consensus 5 ~ki~i~G~~~vGKS 18 (175)
T 2nzj_A 5 YRVVLLGDPGVGKT 18 (175)
T ss_dssp EEEEEECCTTSSHH
T ss_pred EEEEEECCCCccHH
Confidence 45889999999999
No 446
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=37.85 E-value=17 Score=37.23 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=16.0
Q ss_pred hhCCceEEEEEccCccCCC
Q 039519 93 REEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 93 ~~~~~~vi~I~G~gGiGKT 111 (647)
....-.+|+|+|..|+|||
T Consensus 163 ~~~~ggii~I~GpnGSGKT 181 (418)
T 1p9r_A 163 IKRPHGIILVTGPTGSGKS 181 (418)
T ss_dssp HTSSSEEEEEECSTTSCHH
T ss_pred HHhcCCeEEEECCCCCCHH
Confidence 3455679999999999999
No 447
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=37.48 E-value=10 Score=35.32 Aligned_cols=16 Identities=13% Similarity=-0.035 Sum_probs=14.3
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...+|+|.|+.|+|||
T Consensus 15 ~~~~i~i~G~~gsGKs 30 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKS 30 (236)
T ss_dssp CCCEEEEECSSCSSHH
T ss_pred CCcEEEEECCCCCCHH
Confidence 4568999999999999
No 448
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=37.38 E-value=25 Score=36.81 Aligned_cols=90 Identities=10% Similarity=0.085 Sum_probs=50.8
Q ss_pred HHHHHhhh-CCceEEEEEccCccCCC----------CC-------Ccc-eEEEEEEcCcc-CHHHHHHHHHHHhCCCC--
Q 039519 87 KVRRCLRE-EQVGIIGLYGMGGLLGA----------PN-------DFD-VVIWMVVSKDL-QLEKIQERIGRRIGFLD-- 144 (647)
Q Consensus 87 ~i~~~L~~-~~~~vi~I~G~gGiGKT----------~~-------~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-- 144 (647)
+.++.|.- ..-.-++|+|-+|+||| .. +-+ .++++-+++.. .+.++.+.+...=....
T Consensus 151 raID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tv 230 (510)
T 2ck3_A 151 KAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTI 230 (510)
T ss_dssp HHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEE
T ss_pred eeeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccce
Confidence 34454442 34457899999999999 11 244 36677777764 46677777765311100
Q ss_pred ---cCCCCCCHHHH------HHHHHHHh--ccCCeeEEEecCCC
Q 039519 145 ---ESWKNGSLEDK------ASDIFRIL--SKKKLLLLLDDIWE 177 (647)
Q Consensus 145 ---~~~~~~~~~~~------~~~l~~~l--~~~r~LlVlDdv~~ 177 (647)
.. .+...... .-.+.+++ +++.+|+++||+-.
T Consensus 231 vV~at-ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 231 VVSAT-ASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp EEEEC-TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred EEEEC-CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 00 11111111 11344444 47999999999964
No 449
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=37.27 E-value=9.5 Score=35.74 Aligned_cols=16 Identities=13% Similarity=0.189 Sum_probs=14.2
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
.-.+++|+|..|+|||
T Consensus 30 ~Ge~~~i~G~nGsGKS 45 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKS 45 (237)
T ss_dssp TTCEEEEECSTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3469999999999999
No 450
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=37.26 E-value=8.7 Score=34.49 Aligned_cols=16 Identities=19% Similarity=0.133 Sum_probs=13.7
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
..--|+|+|.+|+|||
T Consensus 22 ~~~ki~vvG~~~vGKS 37 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKS 37 (195)
T ss_dssp CEEEEEEECSTTSSHH
T ss_pred cEEEEEEECCCCCCHH
Confidence 3457899999999999
No 451
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=36.85 E-value=8.9 Score=32.87 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=11.9
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
-|+|+|.+|+|||
T Consensus 5 ki~v~G~~~~GKs 17 (167)
T 1c1y_A 5 KLVVLGSGGVGKS 17 (167)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4789999999999
No 452
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=36.77 E-value=12 Score=32.84 Aligned_cols=14 Identities=21% Similarity=0.047 Sum_probs=9.7
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
--|.|+|.+|+|||
T Consensus 9 ~ki~v~G~~~~GKs 22 (183)
T 2fu5_C 9 FKLLLIGDSGVGKT 22 (183)
T ss_dssp EEEEEECCCCC---
T ss_pred eEEEEECCCCCCHH
Confidence 45889999999999
No 453
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=36.37 E-value=73 Score=29.38 Aligned_cols=12 Identities=8% Similarity=-0.360 Sum_probs=10.9
Q ss_pred EEEEccCccCCC
Q 039519 100 IGLYGMGGLLGA 111 (647)
Q Consensus 100 i~I~G~gGiGKT 111 (647)
+.|+|..|.|||
T Consensus 111 ~ll~~~tG~GKT 122 (237)
T 2fz4_A 111 GCIVLPTGSGKT 122 (237)
T ss_dssp EEEEESSSTTHH
T ss_pred EEEEeCCCCCHH
Confidence 678999999999
No 454
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=36.30 E-value=9.2 Score=32.72 Aligned_cols=14 Identities=21% Similarity=0.302 Sum_probs=12.5
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
.-|+|+|.+|+|||
T Consensus 5 ~~i~v~G~~~~GKs 18 (168)
T 1u8z_A 5 HKVIMVGSGGVGKS 18 (168)
T ss_dssp EEEEEECSTTSSHH
T ss_pred EEEEEECCCCCCHH
Confidence 35789999999999
No 455
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=36.24 E-value=9.8 Score=34.39 Aligned_cols=16 Identities=6% Similarity=-0.143 Sum_probs=14.1
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
....|+|+|..|+|||
T Consensus 25 ~~~~v~lvG~~g~GKS 40 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKS 40 (210)
T ss_dssp CSEEEEEEECTTSSHH
T ss_pred CCcEEEEECCCCCCHH
Confidence 4468999999999999
No 456
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=36.23 E-value=9.1 Score=33.49 Aligned_cols=14 Identities=7% Similarity=-0.166 Sum_probs=12.6
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
..|+|+|.+|+|||
T Consensus 5 ~ki~ivG~~g~GKS 18 (172)
T 2gj8_A 5 MKVVIAGRPNAGKS 18 (172)
T ss_dssp EEEEEEESTTSSHH
T ss_pred CEEEEECCCCCCHH
Confidence 46889999999999
No 457
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=42.45 E-value=7.5 Score=35.05 Aligned_cols=23 Identities=13% Similarity=-0.041 Sum_probs=16.5
Q ss_pred HHHhhhCCceEEEEEccCccCCC
Q 039519 89 RRCLREEQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 89 ~~~L~~~~~~vi~I~G~gGiGKT 111 (647)
.+.+.....--|+|+|.+|+|||
T Consensus 22 ~~~~~~~~~~ki~v~G~~~~GKS 44 (204)
T 3th5_A 22 ENLYFQGQAIKCVVVGDGAVGKT 44 (204)
Confidence 33344444456889999999999
No 458
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=35.97 E-value=10 Score=35.28 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=14.1
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
.-.+++|+|..|.|||
T Consensus 33 ~Ge~~~i~G~nGsGKS 48 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKT 48 (229)
T ss_dssp TTCEEEEECCTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3468999999999999
No 459
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=35.94 E-value=9.4 Score=33.80 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=12.4
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
--|.|+|.+|+|||
T Consensus 22 ~ki~vvG~~~~GKS 35 (190)
T 3con_A 22 YKLVVVGAGGVGKS 35 (190)
T ss_dssp EEEEEECSTTSSHH
T ss_pred eEEEEECcCCCCHH
Confidence 35789999999999
No 460
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=35.80 E-value=9.5 Score=32.60 Aligned_cols=13 Identities=23% Similarity=0.394 Sum_probs=12.1
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
-|+|+|.+|+|||
T Consensus 5 ~i~v~G~~~~GKS 17 (167)
T 1kao_A 5 KVVVLGSGGVGKS 17 (167)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5889999999999
No 461
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=35.79 E-value=10 Score=36.16 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=14.3
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
.-.+++|+|..|+|||
T Consensus 31 ~Ge~~~liG~nGsGKS 46 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKS 46 (262)
T ss_dssp TTCEEEEECCTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 4468999999999999
No 462
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=35.73 E-value=11 Score=36.00 Aligned_cols=48 Identities=8% Similarity=-0.010 Sum_probs=28.8
Q ss_pred HHHHHHHhccCCeeEEEecCCCccccccccCCCCCCCCCcEEEEecCchHH
Q 039519 156 ASDIFRILSKKKLLLLLDDIWERVDLTKVGVPFPDPENKSRIDFTTRFLEI 206 (647)
Q Consensus 156 ~~~l~~~l~~~r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v 206 (647)
...+.+.|...+=++++|...+.+....+... ...|.-|++||...++
T Consensus 88 ~~~la~aL~~~p~illlDEp~D~~~~~~~l~~---~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMRDLETVETALRA---AETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEECCSSH
T ss_pred HHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHH---HccCCEEEEEeCcchH
Confidence 45666777677778889998755433322111 1246668888766443
No 463
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=35.70 E-value=10 Score=34.82 Aligned_cols=14 Identities=21% Similarity=0.031 Sum_probs=12.7
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
..|.|.|++|+|||
T Consensus 6 ~~I~l~G~~GsGKs 19 (217)
T 3be4_A 6 HNLILIGAPGSGKG 19 (217)
T ss_dssp CEEEEEECTTSSHH
T ss_pred eEEEEECCCCCCHH
Confidence 46889999999999
No 464
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=35.69 E-value=10 Score=36.46 Aligned_cols=16 Identities=13% Similarity=0.225 Sum_probs=14.2
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
.-.+++|+|..|+|||
T Consensus 33 ~Ge~~~iiGpnGsGKS 48 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKS 48 (275)
T ss_dssp TTSEEEEECCTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3468999999999999
No 465
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=35.61 E-value=11 Score=37.50 Aligned_cols=14 Identities=14% Similarity=-0.078 Sum_probs=13.2
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
.+|+|.|+.|+|||
T Consensus 8 ~lI~I~GptgSGKT 21 (340)
T 3d3q_A 8 FLIVIVGPTASGKT 21 (340)
T ss_dssp EEEEEECSTTSSHH
T ss_pred ceEEEECCCcCcHH
Confidence 48999999999999
No 466
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=35.59 E-value=9.6 Score=32.61 Aligned_cols=12 Identities=17% Similarity=0.146 Sum_probs=11.4
Q ss_pred EEEEccCccCCC
Q 039519 100 IGLYGMGGLLGA 111 (647)
Q Consensus 100 i~I~G~gGiGKT 111 (647)
|+|+|.+|+|||
T Consensus 3 i~~~G~~~~GKs 14 (164)
T 1r8s_A 3 ILMVGLDAAGKT 14 (164)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 789999999999
No 467
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=35.59 E-value=10 Score=34.65 Aligned_cols=13 Identities=23% Similarity=-0.102 Sum_probs=11.9
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
.|.|.|++|+|||
T Consensus 2 ~I~l~G~~GsGKs 14 (214)
T 1e4v_A 2 RIILLGAPVAGKG 14 (214)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4789999999999
No 468
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=35.56 E-value=10 Score=35.54 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=14.1
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
.-.+++|+|..|+|||
T Consensus 31 ~Ge~~~l~G~nGsGKS 46 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKT 46 (240)
T ss_dssp TTCEEEEECSTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3468999999999999
No 469
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=35.53 E-value=9.6 Score=32.84 Aligned_cols=14 Identities=21% Similarity=0.064 Sum_probs=12.5
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
--|+|+|.+|+|||
T Consensus 7 ~~i~v~G~~~~GKs 20 (170)
T 1z08_A 7 FKVVLLGEGCVGKT 20 (170)
T ss_dssp EEEEEECCTTSCHH
T ss_pred eEEEEECcCCCCHH
Confidence 35889999999999
No 470
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=35.46 E-value=22 Score=34.20 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=22.2
Q ss_pred ccchHHHHHHHHHhhh-----------CCceEEEEEccCccCCC
Q 039519 79 VGLESTFDKVRRCLRE-----------EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 79 vGr~~~~~~i~~~L~~-----------~~~~vi~I~G~gGiGKT 111 (647)
.|.++-++.+.+.+.+ .....|+|+|.+|+|||
T Consensus 91 ~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKS 134 (282)
T 1puj_A 91 QGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKS 134 (282)
T ss_dssp TTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchH
Confidence 3556656656555531 23346899999999998
No 471
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=35.36 E-value=10 Score=35.94 Aligned_cols=16 Identities=13% Similarity=0.069 Sum_probs=14.2
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
.-.+++|+|..|+|||
T Consensus 32 ~Ge~~~liG~nGsGKS 47 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKS 47 (257)
T ss_dssp TTCEEEEECSTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3468999999999999
No 472
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=35.32 E-value=33 Score=33.97 Aligned_cols=43 Identities=12% Similarity=0.049 Sum_probs=27.7
Q ss_pred CceEEEEEccCccCCC----------CCCcceEEEEEEcCccCHHHHHHHHHHHh
Q 039519 96 QVGIIGLYGMGGLLGA----------PNDFDVVIWMVVSKDLQLEKIQERIGRRI 140 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT----------~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 140 (647)
.-.++.|.|.+|+||| ...=..++|++. ..+...+...++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 3468999999999999 111134566554 445667766665543
No 473
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=35.32 E-value=10 Score=34.94 Aligned_cols=13 Identities=23% Similarity=0.227 Sum_probs=12.0
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
.|.|.|++|+|||
T Consensus 2 ~I~l~G~~GsGKs 14 (223)
T 2xb4_A 2 NILIFGPNGSGKG 14 (223)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 5889999999999
No 474
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=35.28 E-value=11 Score=35.44 Aligned_cols=16 Identities=25% Similarity=0.183 Sum_probs=14.3
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
.-.+++|+|..|+|||
T Consensus 27 ~Ge~~~i~G~nGsGKS 42 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKS 42 (243)
T ss_dssp TTEEEEEECCTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 4469999999999999
No 475
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=35.27 E-value=13 Score=32.62 Aligned_cols=16 Identities=25% Similarity=0.054 Sum_probs=14.0
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
....|+|+|.+|+|||
T Consensus 15 ~~~ki~ivG~~~vGKS 30 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKT 30 (181)
T ss_dssp SCEEEEEEESTTSSHH
T ss_pred CceEEEEECCCCCCHH
Confidence 4567899999999999
No 476
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=35.22 E-value=9.8 Score=32.75 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=12.0
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
-|+|+|.+|+|||
T Consensus 5 ~i~v~G~~~~GKs 17 (172)
T 2erx_A 5 RVAVFGAGGVGKS 17 (172)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5789999999999
No 477
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=35.19 E-value=12 Score=32.50 Aligned_cols=16 Identities=6% Similarity=0.025 Sum_probs=14.0
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
+...|+|+|.+|+|||
T Consensus 7 ~~~~i~v~G~~~~GKs 22 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKT 22 (178)
T ss_dssp CCCEEEEESCTTTTHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 4567899999999999
No 478
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=35.03 E-value=9.8 Score=33.58 Aligned_cols=14 Identities=14% Similarity=-0.142 Sum_probs=12.4
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
--|+|+|.+|+|||
T Consensus 8 ~ki~v~G~~~vGKS 21 (184)
T 1m7b_A 8 CKIVVVGDSQCGKT 21 (184)
T ss_dssp EEEEEEESTTSSHH
T ss_pred EEEEEECCCCCCHH
Confidence 45789999999999
No 479
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=35.00 E-value=10 Score=32.68 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=12.0
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
-|+|+|.+|+|||
T Consensus 8 ~i~v~G~~~~GKS 20 (170)
T 1z0j_A 8 KVCLLGDTGVGKS 20 (170)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 5789999999999
No 480
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=34.86 E-value=12 Score=37.24 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=15.4
Q ss_pred CCceEEEEEccCccCCC
Q 039519 95 EQVGIIGLYGMGGLLGA 111 (647)
Q Consensus 95 ~~~~vi~I~G~gGiGKT 111 (647)
.+..+|+|+|.+|+|||
T Consensus 54 ~~~~~i~i~G~~g~GKS 70 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKS 70 (341)
T ss_dssp SCSEEEEEEECTTSCHH
T ss_pred CCCEEEEEEcCCCCCHH
Confidence 56789999999999999
No 481
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=34.77 E-value=11 Score=35.23 Aligned_cols=15 Identities=13% Similarity=0.133 Sum_probs=13.6
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
..+|+|.|++|+|||
T Consensus 9 ~~~i~i~G~~GsGKs 23 (233)
T 3r20_A 9 SLVVAVDGPAGTGKS 23 (233)
T ss_dssp CCEEEEECCTTSSHH
T ss_pred CeEEEEECCCCCCHH
Confidence 358999999999999
No 482
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=34.66 E-value=10 Score=32.57 Aligned_cols=13 Identities=15% Similarity=0.115 Sum_probs=11.9
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
-|.|+|.+|+|||
T Consensus 5 ~i~v~G~~~~GKs 17 (170)
T 1ek0_A 5 KLVLLGEAAVGKS 17 (170)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4789999999999
No 483
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=34.66 E-value=12 Score=33.18 Aligned_cols=16 Identities=19% Similarity=0.125 Sum_probs=14.1
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
+...|+|+|.+|+|||
T Consensus 22 ~~~~i~v~G~~~~GKS 37 (195)
T 1svi_A 22 GLPEIALAGRSNVGKS 37 (195)
T ss_dssp CCCEEEEEEBTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 4567899999999999
No 484
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=34.60 E-value=10 Score=33.63 Aligned_cols=14 Identities=14% Similarity=-0.026 Sum_probs=12.5
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
--|+|+|.+|+|||
T Consensus 21 ~ki~ivG~~~vGKS 34 (184)
T 3ihw_A 21 LKVGIVGNLSSGKS 34 (184)
T ss_dssp EEEEEECCTTSCHH
T ss_pred eEEEEECCCCCCHH
Confidence 46889999999999
No 485
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=34.35 E-value=10 Score=32.61 Aligned_cols=14 Identities=29% Similarity=0.128 Sum_probs=12.4
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
--|+|+|.+|+|||
T Consensus 4 ~~i~v~G~~~~GKs 17 (170)
T 1g16_A 4 MKILLIGDSGVGKS 17 (170)
T ss_dssp EEEEEEESTTSSHH
T ss_pred eEEEEECcCCCCHH
Confidence 35789999999999
No 486
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=34.28 E-value=21 Score=36.40 Aligned_cols=17 Identities=18% Similarity=0.096 Sum_probs=7.5
Q ss_pred CCceEEEEE-ccCccCCC
Q 039519 95 EQVGIIGLY-GMGGLLGA 111 (647)
Q Consensus 95 ~~~~vi~I~-G~gGiGKT 111 (647)
...++|+|+ |.||+|||
T Consensus 109 ~~~~vIav~s~KGGvGKT 126 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKT 126 (403)
T ss_dssp CSCEEEEECCC-------
T ss_pred CCceEEEEEcCCCCchHH
Confidence 457788886 89999999
No 487
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=34.27 E-value=10 Score=33.00 Aligned_cols=15 Identities=13% Similarity=0.069 Sum_probs=13.1
Q ss_pred ceEEEEEccCccCCC
Q 039519 97 VGIIGLYGMGGLLGA 111 (647)
Q Consensus 97 ~~vi~I~G~gGiGKT 111 (647)
.--|+|+|.+|+|||
T Consensus 9 ~~~i~v~G~~~~GKs 23 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKS 23 (181)
T ss_dssp EEEEEEECCTTSCHH
T ss_pred ceEEEEECCCCCCHH
Confidence 446889999999999
No 488
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=34.26 E-value=11 Score=35.50 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=14.1
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
.-.+++|+|..|+|||
T Consensus 34 ~Ge~~~i~G~nGsGKS 49 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKS 49 (247)
T ss_dssp TTCEEEEECSTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3468999999999999
No 489
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=34.23 E-value=11 Score=35.87 Aligned_cols=16 Identities=13% Similarity=0.133 Sum_probs=14.3
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
.-.+++|+|..|+|||
T Consensus 49 ~Gei~~liG~NGsGKS 64 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKS 64 (263)
T ss_dssp TTCEEEEECCTTSSHH
T ss_pred CCCEEEEEcCCCCcHH
Confidence 4568999999999999
No 490
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=34.17 E-value=10 Score=33.84 Aligned_cols=14 Identities=21% Similarity=0.105 Sum_probs=12.6
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
--|+|+|.+|+|||
T Consensus 7 ~kv~lvG~~~vGKS 20 (192)
T 2cjw_A 7 YRVVLIGEQGVGKS 20 (192)
T ss_dssp EEEEEECSTTSSHH
T ss_pred EEEEEECCCCCCHH
Confidence 45889999999999
No 491
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=34.17 E-value=12 Score=36.39 Aligned_cols=14 Identities=29% Similarity=0.114 Sum_probs=12.9
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
.+|.|.|++|+|||
T Consensus 3 ~~I~l~G~~GsGKS 16 (301)
T 1ltq_A 3 KIILTIGCPGSGKS 16 (301)
T ss_dssp EEEEEECCTTSSHH
T ss_pred eEEEEECCCCCCHH
Confidence 47899999999999
No 492
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=34.12 E-value=13 Score=33.81 Aligned_cols=16 Identities=13% Similarity=-0.203 Sum_probs=14.0
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
....|.|+|.+|+|||
T Consensus 11 ~~~~i~~~G~~g~GKT 26 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKT 26 (218)
T ss_dssp CCCEEEEECSTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 4567899999999999
No 493
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=34.09 E-value=11 Score=34.06 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=12.1
Q ss_pred eEEEEE-ccCccCCC
Q 039519 98 GIIGLY-GMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~-G~gGiGKT 111 (647)
++|+|+ +.||+|||
T Consensus 2 ~vi~v~s~kgG~GKT 16 (206)
T 4dzz_A 2 KVISFLNPKGGSGKT 16 (206)
T ss_dssp EEEEECCSSTTSSHH
T ss_pred eEEEEEeCCCCccHH
Confidence 678887 78999999
No 494
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=34.06 E-value=10 Score=33.54 Aligned_cols=14 Identities=29% Similarity=0.017 Sum_probs=12.4
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
--|.|+|.+|+|||
T Consensus 15 ~ki~vvG~~~~GKs 28 (198)
T 3t1o_A 15 FKIVYYGPGLSGKT 28 (198)
T ss_dssp EEEEEECSTTSSHH
T ss_pred cEEEEECCCCCCHH
Confidence 35789999999999
No 495
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=34.05 E-value=9.6 Score=33.26 Aligned_cols=13 Identities=15% Similarity=0.141 Sum_probs=12.0
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
-|.|+|.+|+|||
T Consensus 9 ki~~vG~~~vGKT 21 (178)
T 2iwr_A 9 RLGVLGDARSGKS 21 (178)
T ss_dssp EEEEECCGGGCHH
T ss_pred EEEEECCCCCCHH
Confidence 5789999999999
No 496
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=34.00 E-value=9.6 Score=34.27 Aligned_cols=16 Identities=13% Similarity=0.237 Sum_probs=13.5
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
...-|+|+|.+|+|||
T Consensus 24 ~~~ki~lvG~~~vGKS 39 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKT 39 (198)
T ss_dssp CCEEEEEEEETTSSHH
T ss_pred CCcEEEEECCCCCCHH
Confidence 3446889999999999
No 497
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=33.98 E-value=11 Score=32.86 Aligned_cols=14 Identities=29% Similarity=0.228 Sum_probs=12.5
Q ss_pred eEEEEEccCccCCC
Q 039519 98 GIIGLYGMGGLLGA 111 (647)
Q Consensus 98 ~vi~I~G~gGiGKT 111 (647)
--|+|+|.+|+|||
T Consensus 8 ~~i~v~G~~~~GKS 21 (177)
T 1wms_A 8 FKVILLGDGGVGKS 21 (177)
T ss_dssp EEEEEECCTTSSHH
T ss_pred eEEEEECCCCCCHH
Confidence 35889999999999
No 498
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=33.90 E-value=11 Score=35.94 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=14.2
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
.-.+++|+|..|+|||
T Consensus 36 ~Ge~~~liG~nGsGKS 51 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKS 51 (266)
T ss_dssp TTCEEEEECCTTSCHH
T ss_pred CCCEEEEECCCCCcHH
Confidence 3468999999999999
No 499
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=33.87 E-value=11 Score=35.49 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=14.1
Q ss_pred CceEEEEEccCccCCC
Q 039519 96 QVGIIGLYGMGGLLGA 111 (647)
Q Consensus 96 ~~~vi~I~G~gGiGKT 111 (647)
.-.+++|+|..|+|||
T Consensus 28 ~Ge~~~l~G~nGsGKS 43 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKS 43 (250)
T ss_dssp TTCEEEEECSTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3458999999999999
No 500
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=33.85 E-value=10 Score=33.39 Aligned_cols=13 Identities=15% Similarity=0.049 Sum_probs=11.9
Q ss_pred EEEEEccCccCCC
Q 039519 99 IIGLYGMGGLLGA 111 (647)
Q Consensus 99 vi~I~G~gGiGKT 111 (647)
-|+|+|.+|+|||
T Consensus 3 ki~v~G~~~~GKS 15 (190)
T 2cxx_A 3 TIIFAGRSNVGKS 15 (190)
T ss_dssp EEEEEEBTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4789999999999
Done!