BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039522
(152 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152
+ +EC VC + E V +L C H FH C+ W + +H +CP+CR L
Sbjct: 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE-QHDSCPVCRKSL 62
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 104 AMECCVCLSRFQSDEEVSELS-CKHFFHRGCLDKWFDNKHSTCPLCR 149
+EC VCL+ + EE L C H FH C+D W HSTCPLCR
Sbjct: 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL-GSHSTCPLCR 50
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 107 CCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLC 148
C VCL F+ +E+ CKH FHR CL KW + + CPLC
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-KVCPLC 58
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 105 MECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152
M C +C S + + +EL C H+FH+ C+ W K TCP+CR +
Sbjct: 41 MCCPICCSEYVKGDVATELPCHHYFHKPCVSIWL-QKSGTCPVCRCMF 87
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 106 ECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCR 149
+C +CLS + E+V L C H FH+ C+D+W + CP+CR
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICR 58
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 107 CCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRS 150
C VC+ F+S + + L C H FH C+DKW + TCP+CR+
Sbjct: 26 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWL-KANRTCPICRA 68
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 106 ECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCR 149
ECC+C+ L C H F + C+DKW D +H CP+CR
Sbjct: 17 ECCICMD----GRADLILPCAHSFCQKCIDKWSD-RHRNCPICR 55
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 29.6 bits (65), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 105 MECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRS 150
++C +C F E L+C H F C+++W K CP+CR
Sbjct: 54 LQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRK-IECPICRK 95
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 105 MECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRS 150
++C +C F E L+C H F C+++W K CP+CR
Sbjct: 54 LQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRK-IECPICRK 95
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 29.3 bits (64), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 105 MECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRS 150
++C +C F E L+C H F C+++W K CP+CR
Sbjct: 65 LQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRK-IECPICRK 106
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 102 SAAMECCVCLSRFQSDEEVSE-LSCKHFFHRGCLDKWFDNKHSTCPLC 148
S + C +CL + V+ L C H HR C ++ + CPLC
Sbjct: 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGY-RCPLC 49
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 107 CCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCR 149
C +C ++D++V C H CL W +++ CP CR
Sbjct: 337 CKICA---ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 107 CCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCR 149
C +C ++D++V C H CL W +++ CP CR
Sbjct: 337 CKICA---ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 115 QSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCR 149
++D++V C H CL W +++ CP CR
Sbjct: 32 ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 66
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 107 CCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCR 149
C +C ++D++V C H CL W +++ CP CR
Sbjct: 335 CKICA---ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 107 CCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCR 149
C +C ++D++V C H CL W +++ CP CR
Sbjct: 335 CKICA---ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 115 QSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCR 149
++D++V C H CL W +++ CP CR
Sbjct: 35 ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 69
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 123 LSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152
+S + R + KW D H TCP + L
Sbjct: 24 VSTGQTYERSSIQKWLDAGHKTCPKSQETL 53
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 115 QSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCR 149
++D++V C H CL W ++ CP CR
Sbjct: 34 ENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 68
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 107 CCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCR 149
C +C ++D++V C H CL W ++ CP CR
Sbjct: 341 CKICA---ENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 380
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 107 CCVCLSRFQSDEEVSE-LSCKHFFHRGCLDKWFDNKHSTCPLC 148
C +CL + V+ L C H HR C ++ + CPLC
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYR-CPLC 49
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 122 ELSCKHFFHRGCLDKWFDNKHSTCPLCR 149
E SCKH F R C+ + S CP CR
Sbjct: 38 ETSCKHLFCRICILRCLKVMGSYCPSCR 65
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 107 CCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDN--KHSTCPLC 148
C VCL + E + C H F + C+ +W+++ + CP+C
Sbjct: 18 CSVCLEYLK---EPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 115 QSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRS 150
Q D V C H FH C+ W +++ CPLC+
Sbjct: 38 QEDCVVVWGECNHSFHNCCMSLWV-KQNNRCPLCQQ 72
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3 Ubiquitin-
Protein Ligase Uhrf1
Length = 124
Score = 25.8 bits (55), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 125 CKHFFHRGCLDKWFDNKHSTCPLCRSIL 152
C+H + CLD+ F + +CP CR L
Sbjct: 70 CQHNVCKDCLDRSFRAQVFSCPACRYDL 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.133 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,005,572
Number of Sequences: 62578
Number of extensions: 69912
Number of successful extensions: 180
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 157
Number of HSP's gapped (non-prelim): 52
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)