Query 039522
Match_columns 152
No_of_seqs 219 out of 2163
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 10:32:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039522.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039522hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.7 1.8E-18 3.9E-23 137.2 6.0 70 65-152 208-277 (348)
2 PF13639 zf-RING_2: Ring finge 99.6 2.2E-16 4.8E-21 90.6 1.7 43 106-149 2-44 (44)
3 COG5540 RING-finger-containing 99.4 8E-14 1.7E-18 108.0 2.6 50 103-152 322-371 (374)
4 PF12678 zf-rbx1: RING-H2 zinc 99.4 5.4E-13 1.2E-17 84.6 4.0 45 104-149 19-73 (73)
5 PHA02929 N1R/p28-like protein; 99.3 1.4E-12 3.1E-17 99.5 4.1 49 103-152 173-226 (238)
6 COG5243 HRD1 HRD ubiquitin lig 99.3 6.8E-12 1.5E-16 99.8 7.4 50 102-152 285-344 (491)
7 PLN03208 E3 ubiquitin-protein 99.3 4.1E-12 8.8E-17 93.6 4.9 48 102-152 16-78 (193)
8 KOG0823 Predicted E3 ubiquitin 99.2 1.3E-11 2.9E-16 92.6 3.7 49 101-152 44-94 (230)
9 KOG0317 Predicted E3 ubiquitin 99.2 1.2E-11 2.5E-16 95.5 3.2 50 99-152 234-283 (293)
10 cd00162 RING RING-finger (Real 99.2 2.1E-11 4.6E-16 69.0 3.6 45 106-152 1-45 (45)
11 PF13920 zf-C3HC4_3: Zinc fing 99.2 2.1E-11 4.5E-16 71.7 3.0 45 104-152 2-47 (50)
12 PF15227 zf-C3HC4_4: zinc fing 99.2 3E-11 6.5E-16 68.5 3.1 39 107-148 1-42 (42)
13 PF12861 zf-Apc11: Anaphase-pr 99.1 3.2E-11 6.9E-16 77.7 3.2 49 103-151 20-80 (85)
14 PHA02926 zinc finger-like prot 99.1 1.4E-10 2.9E-15 86.9 6.7 50 103-152 169-229 (242)
15 KOG0320 Predicted E3 ubiquitin 99.1 6.7E-11 1.4E-15 85.6 3.8 49 102-152 129-177 (187)
16 PF13923 zf-C3HC4_2: Zinc fing 99.1 5.7E-11 1.2E-15 66.2 2.7 39 107-148 1-39 (39)
17 PF14634 zf-RING_5: zinc-RING 99.0 2.5E-10 5.4E-15 65.3 3.3 44 106-150 1-44 (44)
18 PF00097 zf-C3HC4: Zinc finger 99.0 3.2E-10 6.9E-15 63.7 2.4 40 107-148 1-41 (41)
19 smart00184 RING Ring finger. E 98.9 8.4E-10 1.8E-14 60.2 3.0 39 107-148 1-39 (39)
20 KOG0802 E3 ubiquitin ligase [P 98.9 3.4E-10 7.3E-15 96.2 1.7 49 102-151 289-339 (543)
21 KOG1734 Predicted RING-contain 98.9 2.6E-10 5.7E-15 87.4 0.6 79 74-152 194-280 (328)
22 smart00504 Ubox Modified RING 98.9 1.9E-09 4E-14 65.9 3.7 44 105-152 2-45 (63)
23 TIGR00599 rad18 DNA repair pro 98.8 3.9E-09 8.5E-14 86.0 3.5 46 103-152 25-70 (397)
24 COG5194 APC11 Component of SCF 98.7 8.4E-09 1.8E-13 65.2 3.1 46 105-151 21-79 (88)
25 COG5574 PEX10 RING-finger-cont 98.7 1.4E-08 3.1E-13 77.7 3.1 47 102-151 213-260 (271)
26 PF13445 zf-RING_UBOX: RING-ty 98.6 2.4E-08 5.1E-13 56.7 2.2 39 107-146 1-43 (43)
27 KOG1493 Anaphase-promoting com 98.6 1E-08 2.2E-13 64.2 0.3 48 104-151 20-79 (84)
28 KOG0828 Predicted E3 ubiquitin 98.6 2E-08 4.4E-13 82.7 1.6 51 102-152 569-633 (636)
29 KOG0804 Cytoplasmic Zn-finger 98.6 3.7E-08 8E-13 80.3 3.0 50 98-150 169-219 (493)
30 KOG2164 Predicted E3 ubiquitin 98.5 3.9E-08 8.5E-13 81.3 2.4 46 104-152 186-235 (513)
31 TIGR00570 cdk7 CDK-activating 98.5 7.9E-08 1.7E-12 75.8 4.0 49 104-152 3-53 (309)
32 PF04564 U-box: U-box domain; 98.5 9.5E-08 2.1E-12 60.4 3.2 47 103-152 3-49 (73)
33 smart00744 RINGv The RING-vari 98.5 1.6E-07 3.6E-12 54.8 2.9 43 106-149 1-49 (49)
34 KOG2930 SCF ubiquitin ligase, 98.4 1.1E-07 2.3E-12 63.0 1.9 48 103-151 45-106 (114)
35 PF11793 FANCL_C: FANCL C-term 98.4 3.4E-08 7.3E-13 62.0 -0.5 49 104-152 2-65 (70)
36 KOG2177 Predicted E3 ubiquitin 98.4 1.3E-07 2.9E-12 72.8 1.8 44 102-149 11-54 (386)
37 KOG0287 Postreplication repair 98.4 1.2E-07 2.6E-12 75.0 1.5 46 103-152 22-67 (442)
38 COG5219 Uncharacterized conser 98.3 1.9E-07 4.1E-12 82.1 1.6 51 102-152 1467-1522(1525)
39 COG5432 RAD18 RING-finger-cont 98.2 5.7E-07 1.2E-11 70.0 2.4 45 103-151 24-68 (391)
40 KOG0824 Predicted E3 ubiquitin 98.2 5.1E-07 1.1E-11 70.4 2.0 47 103-152 6-52 (324)
41 KOG0827 Predicted E3 ubiquitin 98.1 1.2E-06 2.6E-11 70.6 2.1 46 104-149 4-52 (465)
42 PF14835 zf-RING_6: zf-RING of 98.1 8.6E-07 1.9E-11 54.1 0.1 42 104-151 7-49 (65)
43 KOG0311 Predicted E3 ubiquitin 98.0 4.6E-07 9.9E-12 72.1 -1.7 47 103-152 42-89 (381)
44 KOG1039 Predicted E3 ubiquitin 98.0 2.1E-06 4.5E-11 69.0 1.9 50 102-151 159-219 (344)
45 KOG0978 E3 ubiquitin ligase in 97.9 2.3E-06 5.1E-11 73.8 0.3 47 103-152 642-688 (698)
46 KOG4265 Predicted E3 ubiquitin 97.9 6.7E-06 1.4E-10 65.7 2.6 47 102-152 288-335 (349)
47 KOG4172 Predicted E3 ubiquitin 97.9 2.4E-06 5.2E-11 50.3 0.0 45 105-152 8-53 (62)
48 KOG0825 PHD Zn-finger protein 97.9 3.7E-06 8.1E-11 72.9 0.7 47 104-151 123-169 (1134)
49 KOG1645 RING-finger-containing 97.8 1.9E-05 4E-10 64.2 3.3 48 103-150 3-53 (463)
50 PF11789 zf-Nse: Zinc-finger o 97.8 2.2E-05 4.8E-10 47.2 2.5 43 103-147 10-53 (57)
51 PF14570 zf-RING_4: RING/Ubox 97.7 4.2E-05 9.1E-10 44.2 2.8 46 107-152 1-47 (48)
52 KOG3970 Predicted E3 ubiquitin 97.6 5.4E-05 1.2E-09 57.2 3.8 49 103-152 49-104 (299)
53 KOG4159 Predicted E3 ubiquitin 97.6 5.9E-05 1.3E-09 61.9 3.5 47 102-152 82-128 (398)
54 KOG0297 TNF receptor-associate 97.5 8.6E-05 1.9E-09 61.0 2.8 49 101-152 18-66 (391)
55 KOG4445 Uncharacterized conser 97.5 3.4E-05 7.5E-10 60.4 0.5 36 103-138 114-149 (368)
56 KOG1785 Tyrosine kinase negati 97.4 4.4E-05 9.6E-10 62.0 1.0 45 105-152 370-415 (563)
57 KOG2879 Predicted E3 ubiquitin 97.3 0.00033 7.2E-09 54.3 4.0 50 100-151 235-285 (298)
58 PF05883 Baculo_RING: Baculovi 97.1 0.00018 3.8E-09 50.3 1.2 35 104-138 26-66 (134)
59 KOG1428 Inhibitor of type V ad 97.1 0.00025 5.4E-09 65.6 2.4 51 102-152 3484-3543(3738)
60 KOG1941 Acetylcholine receptor 97.0 0.00023 4.9E-09 57.8 0.9 47 104-150 365-413 (518)
61 PHA02825 LAP/PHD finger-like p 96.9 0.00087 1.9E-08 48.1 3.2 48 102-151 6-57 (162)
62 PF12906 RINGv: RING-variant d 96.9 0.00059 1.3E-08 39.3 1.6 41 107-148 1-47 (47)
63 KOG4185 Predicted E3 ubiquitin 96.9 0.00076 1.6E-08 53.2 2.7 47 105-151 4-53 (296)
64 KOG3039 Uncharacterized conser 96.8 0.0012 2.6E-08 50.6 3.4 49 103-152 220-269 (303)
65 COG5152 Uncharacterized conser 96.8 0.00066 1.4E-08 50.5 1.6 42 105-150 197-238 (259)
66 KOG1571 Predicted E3 ubiquitin 96.7 0.00082 1.8E-08 54.0 2.1 52 94-152 295-346 (355)
67 PF10367 Vps39_2: Vacuolar sor 96.7 0.00055 1.2E-08 45.7 0.9 33 102-135 76-108 (109)
68 COG5175 MOT2 Transcriptional r 96.7 0.00081 1.8E-08 53.8 1.8 49 103-151 13-62 (480)
69 KOG2660 Locus-specific chromos 96.7 0.00044 9.5E-09 54.9 -0.1 47 102-151 13-59 (331)
70 KOG1952 Transcription factor N 96.6 0.0009 2E-08 58.9 1.7 48 103-150 190-244 (950)
71 KOG4692 Predicted E3 ubiquitin 96.6 0.0015 3.3E-08 52.5 2.9 48 100-151 418-465 (489)
72 PF04641 Rtf2: Rtf2 RING-finge 96.6 0.0029 6.4E-08 49.2 4.1 51 100-152 109-160 (260)
73 KOG1814 Predicted E3 ubiquitin 96.6 0.0012 2.6E-08 53.9 1.8 47 103-149 183-236 (445)
74 KOG0826 Predicted E3 ubiquitin 96.4 0.0072 1.6E-07 48.2 5.3 44 103-149 299-342 (357)
75 KOG1813 Predicted E3 ubiquitin 96.4 0.0011 2.3E-08 52.0 0.7 43 105-151 242-284 (313)
76 PF08746 zf-RING-like: RING-li 96.4 0.0021 4.5E-08 36.4 1.5 42 107-148 1-43 (43)
77 KOG1002 Nucleotide excision re 96.3 0.0015 3.3E-08 55.1 1.0 49 100-151 532-584 (791)
78 KOG3002 Zn finger protein [Gen 96.1 0.0036 7.8E-08 49.7 2.1 45 100-152 44-90 (299)
79 PF14447 Prok-RING_4: Prokaryo 96.0 0.0031 6.8E-08 37.3 1.1 42 105-152 8-49 (55)
80 KOG3268 Predicted E3 ubiquitin 95.9 0.0064 1.4E-07 44.6 2.5 30 123-152 188-227 (234)
81 PHA03096 p28-like protein; Pro 95.9 0.0044 9.4E-08 48.9 1.7 46 105-150 179-231 (284)
82 KOG2114 Vacuolar assembly/sort 95.9 0.0045 9.7E-08 54.7 1.8 41 104-150 840-880 (933)
83 KOG0801 Predicted E3 ubiquitin 95.6 0.0035 7.5E-08 45.2 0.2 29 103-131 176-204 (205)
84 KOG4275 Predicted E3 ubiquitin 95.5 0.002 4.3E-08 50.6 -1.4 40 104-151 300-340 (350)
85 KOG2817 Predicted E3 ubiquitin 95.4 0.014 3E-07 47.6 3.1 46 103-148 333-380 (394)
86 KOG3053 Uncharacterized conser 95.4 0.0081 1.7E-07 46.4 1.4 51 101-151 17-80 (293)
87 PF05290 Baculo_IE-1: Baculovi 95.3 0.013 2.9E-07 40.9 2.2 47 103-152 79-131 (140)
88 COG5236 Uncharacterized conser 95.1 0.027 5.8E-07 45.5 3.6 48 101-151 58-106 (493)
89 COG5222 Uncharacterized conser 94.9 0.015 3.3E-07 46.0 1.8 45 104-150 274-318 (427)
90 KOG1001 Helicase-like transcri 94.9 0.01 2.2E-07 52.1 0.8 43 105-151 455-498 (674)
91 COG5220 TFB3 Cdk activating ki 94.7 0.013 2.8E-07 44.9 1.0 47 103-149 9-60 (314)
92 KOG1940 Zn-finger protein [Gen 94.5 0.022 4.8E-07 44.7 1.8 44 106-150 160-204 (276)
93 PHA02862 5L protein; Provision 94.3 0.026 5.7E-07 40.0 1.7 25 127-151 26-51 (156)
94 PF10272 Tmpp129: Putative tra 93.9 0.036 7.7E-07 45.1 2.0 29 124-152 310-350 (358)
95 PF14446 Prok-RING_1: Prokaryo 93.1 0.13 2.7E-06 30.5 2.8 34 103-136 4-38 (54)
96 KOG2034 Vacuolar sorting prote 93.0 0.049 1.1E-06 48.6 1.5 36 102-138 815-850 (911)
97 KOG2932 E3 ubiquitin ligase in 92.9 0.041 8.8E-07 43.8 0.8 43 104-151 90-132 (389)
98 KOG3899 Uncharacterized conser 92.7 0.055 1.2E-06 42.7 1.3 28 125-152 325-364 (381)
99 KOG0827 Predicted E3 ubiquitin 92.7 0.0057 1.2E-07 49.8 -4.3 49 103-152 195-244 (465)
100 KOG3161 Predicted E3 ubiquitin 92.3 0.049 1.1E-06 47.2 0.6 42 104-149 11-53 (861)
101 KOG0309 Conserved WD40 repeat- 91.6 0.11 2.5E-06 45.8 2.0 40 106-147 1030-1069(1081)
102 KOG1812 Predicted E3 ubiquitin 91.5 0.087 1.9E-06 43.4 1.1 38 103-140 145-183 (384)
103 PF02891 zf-MIZ: MIZ/SP-RING z 91.2 0.27 5.8E-06 28.5 2.7 44 105-151 3-50 (50)
104 KOG0825 PHD Zn-finger protein 91.1 0.15 3.2E-06 45.4 2.2 48 103-150 95-151 (1134)
105 PF14569 zf-UDP: Zinc-binding 90.8 0.35 7.7E-06 30.7 3.1 49 103-151 8-60 (80)
106 KOG4362 Transcriptional regula 90.6 0.066 1.4E-06 46.8 -0.3 46 103-151 20-67 (684)
107 KOG0298 DEAD box-containing he 89.5 0.11 2.3E-06 48.3 0.0 45 103-150 1152-1196(1394)
108 KOG3113 Uncharacterized conser 89.4 0.58 1.3E-05 36.3 3.9 47 102-151 109-156 (293)
109 KOG1609 Protein involved in mR 89.0 0.3 6.5E-06 38.5 2.2 48 104-151 78-132 (323)
110 KOG1100 Predicted E3 ubiquitin 88.2 0.2 4.4E-06 37.8 0.8 37 107-151 161-198 (207)
111 PF03854 zf-P11: P-11 zinc fin 87.2 0.28 6E-06 28.2 0.7 28 124-152 17-45 (50)
112 smart00249 PHD PHD zinc finger 86.5 0.27 6E-06 26.9 0.5 30 107-136 2-31 (47)
113 KOG1829 Uncharacterized conser 86.4 0.22 4.8E-06 43.0 0.1 41 104-148 511-556 (580)
114 KOG3842 Adaptor protein Pellin 84.8 1 2.3E-05 36.1 3.1 50 102-151 339-412 (429)
115 KOG4718 Non-SMC (structural ma 83.2 0.66 1.4E-05 35.1 1.4 43 103-148 180-222 (235)
116 PLN02189 cellulose synthase 83.1 1.2 2.7E-05 41.0 3.2 49 103-151 33-85 (1040)
117 COG5183 SSM4 Protein involved 82.7 1.2 2.6E-05 40.1 2.9 48 103-151 11-64 (1175)
118 KOG2807 RNA polymerase II tran 81.7 1.5 3.3E-05 35.3 2.9 47 103-150 329-375 (378)
119 COG5109 Uncharacterized conser 81.5 1.4 2.9E-05 35.5 2.6 47 103-149 335-383 (396)
120 KOG1812 Predicted E3 ubiquitin 81.3 0.83 1.8E-05 37.7 1.4 43 104-147 306-350 (384)
121 PF07975 C1_4: TFIIH C1-like d 81.1 0.91 2E-05 26.5 1.1 42 107-149 2-50 (51)
122 PLN02638 cellulose synthase A 80.6 2.8 6.1E-05 38.8 4.6 49 103-151 16-68 (1079)
123 PF01363 FYVE: FYVE zinc finge 80.3 0.89 1.9E-05 27.7 1.0 37 102-138 7-44 (69)
124 PLN02436 cellulose synthase A 80.0 1.8 4E-05 40.0 3.2 49 103-151 35-87 (1094)
125 PF13901 DUF4206: Domain of un 79.3 1 2.3E-05 33.7 1.3 39 105-149 153-196 (202)
126 TIGR00622 ssl1 transcription f 79.2 2.6 5.6E-05 28.7 3.0 45 105-150 56-111 (112)
127 KOG0802 E3 ubiquitin ligase [P 79.1 1.1 2.4E-05 38.5 1.5 43 101-151 476-518 (543)
128 PLN02915 cellulose synthase A 78.7 3.2 6.9E-05 38.4 4.3 49 103-151 14-66 (1044)
129 KOG3579 Predicted E3 ubiquitin 78.1 1.9 4.1E-05 34.1 2.4 36 103-141 267-306 (352)
130 KOG2068 MOT2 transcription fac 78.0 1.8 3.9E-05 34.8 2.3 47 104-151 249-296 (327)
131 PF04710 Pellino: Pellino; In 77.5 0.74 1.6E-05 37.9 0.0 50 103-152 327-400 (416)
132 KOG3039 Uncharacterized conser 77.4 1.4 3.1E-05 34.2 1.5 37 100-139 39-75 (303)
133 PLN02195 cellulose synthase A 76.8 3.2 6.9E-05 38.1 3.8 49 103-151 5-57 (977)
134 KOG1815 Predicted E3 ubiquitin 76.7 1.5 3.3E-05 36.8 1.6 37 102-140 68-104 (444)
135 PF06844 DUF1244: Protein of u 75.2 1.7 3.7E-05 26.7 1.1 12 128-139 11-22 (68)
136 PLN02400 cellulose synthase 73.5 2.7 5.9E-05 39.0 2.5 49 103-151 35-87 (1085)
137 smart00064 FYVE Protein presen 72.0 4.6 0.0001 24.4 2.6 37 103-139 9-46 (68)
138 PF00628 PHD: PHD-finger; Int 71.8 1.7 3.8E-05 24.6 0.6 44 106-149 1-49 (51)
139 smart00132 LIM Zinc-binding do 71.3 4.8 0.0001 20.8 2.3 36 107-152 2-37 (39)
140 KOG2066 Vacuolar assembly/sort 68.2 1.5 3.2E-05 39.2 -0.3 38 102-139 782-823 (846)
141 KOG0269 WD40 repeat-containing 67.7 5.1 0.00011 35.8 2.8 41 105-147 780-820 (839)
142 PF13717 zinc_ribbon_4: zinc-r 67.2 2.9 6.4E-05 22.4 0.8 25 106-130 4-36 (36)
143 PF04423 Rad50_zn_hook: Rad50 66.6 1.7 3.7E-05 25.3 -0.2 10 143-152 21-30 (54)
144 cd00065 FYVE FYVE domain; Zinc 66.0 4.8 0.0001 23.2 1.7 35 105-139 3-38 (57)
145 PF10497 zf-4CXXC_R1: Zinc-fin 64.9 11 0.00023 25.3 3.4 46 104-150 7-69 (105)
146 PF07191 zinc-ribbons_6: zinc- 64.6 2.5 5.4E-05 26.3 0.3 39 105-152 2-40 (70)
147 PF07649 C1_3: C1-like domain; 64.3 4.4 9.6E-05 20.5 1.2 29 106-134 2-30 (30)
148 KOG3005 GIY-YIG type nuclease 64.2 6.1 0.00013 31.0 2.4 47 104-150 182-240 (276)
149 PF00412 LIM: LIM domain; Int 61.1 7.5 0.00016 22.3 2.0 11 106-116 28-38 (58)
150 KOG4185 Predicted E3 ubiquitin 58.5 1.7 3.7E-05 34.1 -1.6 48 103-150 206-264 (296)
151 COG4847 Uncharacterized protei 58.1 9.3 0.0002 25.2 2.1 35 104-139 6-40 (103)
152 KOG1729 FYVE finger containing 56.2 3.7 7.9E-05 32.6 -0.0 39 103-141 213-251 (288)
153 KOG4218 Nuclear hormone recept 56.0 3.4 7.4E-05 33.7 -0.2 14 103-116 14-27 (475)
154 PF04216 FdhE: Protein involve 54.7 1.4 3.1E-05 34.7 -2.6 43 102-150 170-219 (290)
155 KOG1729 FYVE finger containing 53.3 6.4 0.00014 31.3 0.9 47 90-136 154-202 (288)
156 PF13719 zinc_ribbon_5: zinc-r 51.9 9.6 0.00021 20.4 1.2 25 106-130 4-36 (37)
157 PF06906 DUF1272: Protein of u 50.7 30 0.00065 20.6 3.2 43 106-151 7-50 (57)
158 cd00350 rubredoxin_like Rubred 50.0 15 0.00033 19.0 1.8 8 143-150 18-25 (33)
159 PF05605 zf-Di19: Drought indu 50.0 2.2 4.7E-05 24.9 -1.7 12 105-116 3-14 (54)
160 PF02318 FYVE_2: FYVE-type zin 48.5 9.3 0.0002 26.0 1.0 34 103-136 53-88 (118)
161 PF10571 UPF0547: Uncharacteri 47.9 11 0.00023 18.7 0.9 22 106-129 2-24 (26)
162 COG3492 Uncharacterized protei 47.7 8.8 0.00019 25.2 0.7 12 128-139 42-53 (104)
163 KOG1819 FYVE finger-containing 47.0 8.5 0.00018 33.1 0.7 38 98-135 895-933 (990)
164 PF13832 zf-HC5HC2H_2: PHD-zin 45.7 14 0.0003 24.5 1.5 33 103-137 54-88 (110)
165 PF12773 DZR: Double zinc ribb 44.8 17 0.00038 20.3 1.6 13 103-115 11-23 (50)
166 PRK03564 formate dehydrogenase 43.5 15 0.00034 29.4 1.7 42 103-150 186-234 (309)
167 PF14353 CpXC: CpXC protein 42.7 26 0.00055 23.9 2.5 44 105-151 2-47 (128)
168 PF06750 DiS_P_DiS: Bacterial 42.2 29 0.00064 22.6 2.6 37 103-152 32-68 (92)
169 PF15069 FAM163: FAM163 family 42.1 81 0.0018 22.4 4.9 32 11-42 5-36 (143)
170 KOG2041 WD40 repeat protein [G 41.4 64 0.0014 29.4 5.1 50 97-151 1124-1183(1189)
171 PF13771 zf-HC5HC2H: PHD-like 41.4 14 0.00031 23.4 1.0 33 104-136 36-68 (90)
172 PF09943 DUF2175: Uncharacteri 40.9 25 0.00053 23.5 2.1 32 106-138 4-35 (101)
173 KOG1815 Predicted E3 ubiquitin 40.4 8.3 0.00018 32.4 -0.3 37 104-140 226-267 (444)
174 KOG0824 Predicted E3 ubiquitin 40.3 9.4 0.0002 30.5 0.0 48 101-151 102-149 (324)
175 KOG1245 Chromatin remodeling c 39.8 11 0.00024 36.3 0.4 48 103-150 1107-1157(1404)
176 KOG2979 Protein involved in DN 39.6 16 0.00036 28.5 1.2 42 104-147 176-218 (262)
177 PF10235 Cript: Microtubule-as 37.8 20 0.00043 23.5 1.2 35 104-151 44-78 (90)
178 smart00734 ZnF_Rad18 Rad18-lik 37.7 17 0.00036 17.9 0.7 7 144-150 3-9 (26)
179 PF14383 VARLMGL: DUF761-assoc 37.1 15 0.00032 19.5 0.4 9 1-9 22-30 (34)
180 PF14311 DUF4379: Domain of un 36.8 23 0.00049 20.5 1.3 23 124-148 33-55 (55)
181 PF13240 zinc_ribbon_2: zinc-r 35.9 6.7 0.00015 18.8 -0.9 8 144-151 15-22 (23)
182 PF00130 C1_1: Phorbol esters/ 34.7 27 0.00059 19.7 1.4 34 103-136 10-45 (53)
183 PRK01343 zinc-binding protein; 32.4 25 0.00055 20.9 1.0 9 143-151 10-18 (57)
184 PF09723 Zn-ribbon_8: Zinc rib 32.2 11 0.00023 20.8 -0.6 25 124-150 10-34 (42)
185 smart00647 IBR In Between Ring 31.4 14 0.0003 21.6 -0.3 14 124-137 45-58 (64)
186 KOG3799 Rab3 effector RIM1 and 31.4 13 0.00028 26.3 -0.4 49 102-150 63-115 (169)
187 TIGR01562 FdhE formate dehydro 30.7 20 0.00044 28.7 0.5 42 103-150 183-232 (305)
188 COG1545 Predicted nucleic-acid 29.9 27 0.00058 24.6 0.9 19 124-151 34-52 (140)
189 KOG4443 Putative transcription 29.6 29 0.00063 30.7 1.3 27 124-150 40-70 (694)
190 PRK09174 F0F1 ATP synthase sub 29.0 1E+02 0.0022 23.1 4.0 27 6-32 44-70 (204)
191 COG3813 Uncharacterized protei 28.4 72 0.0016 20.0 2.5 23 126-151 28-50 (84)
192 KOG2071 mRNA cleavage and poly 28.2 29 0.00063 30.3 1.0 35 103-137 512-556 (579)
193 PF09237 GAGA: GAGA factor; I 27.7 16 0.00035 21.4 -0.4 7 144-150 26-32 (54)
194 PF07800 DUF1644: Protein of u 27.6 26 0.00057 25.4 0.6 9 144-152 82-90 (162)
195 smart00109 C1 Protein kinase C 27.3 45 0.00097 18.0 1.4 33 104-136 11-44 (49)
196 KOG4021 Mitochondrial ribosoma 26.2 36 0.00079 25.6 1.1 21 131-151 97-117 (239)
197 PRK06569 F0F1 ATP synthase sub 25.6 1.4E+02 0.003 21.5 4.0 26 6-31 1-26 (155)
198 PRK13454 F0F1 ATP synthase sub 25.6 1.2E+02 0.0026 22.1 3.8 25 3-27 19-43 (181)
199 KOG1818 Membrane trafficking a 25.4 34 0.00075 30.2 1.0 40 100-139 160-201 (634)
200 cd00029 C1 Protein kinase C co 24.8 36 0.00077 18.6 0.7 33 104-136 11-45 (50)
201 PF01485 IBR: IBR domain; Int 23.8 7.3 0.00016 22.8 -2.5 32 106-137 20-58 (64)
202 PF03107 C1_2: C1 domain; Int 23.5 39 0.00083 17.0 0.6 28 106-133 2-29 (30)
203 PF11682 DUF3279: Protein of u 22.5 55 0.0012 22.8 1.4 18 124-151 102-119 (128)
204 PF07282 OrfB_Zn_ribbon: Putat 21.8 95 0.002 18.5 2.3 34 103-136 27-63 (69)
205 PTZ00303 phosphatidylinositol 21.7 64 0.0014 29.7 1.9 34 105-138 461-500 (1374)
206 KOG0955 PHD finger protein BR1 21.6 43 0.00093 31.5 0.9 36 100-135 215-252 (1051)
207 PF05502 Dynactin_p62: Dynacti 21.4 49 0.0011 28.3 1.2 15 103-117 25-39 (483)
208 COG4647 AcxC Acetone carboxyla 21.0 61 0.0013 22.8 1.4 23 107-132 60-82 (165)
209 PLN02248 cellulose synthase-li 21.0 77 0.0017 30.0 2.3 27 124-151 149-175 (1135)
210 COG5627 MMS21 DNA repair prote 20.7 51 0.0011 25.6 1.0 42 104-147 189-231 (275)
211 KOG4323 Polycomb-like PHD Zn-f 20.3 58 0.0013 27.7 1.3 47 104-150 168-223 (464)
212 cd00729 rubredoxin_SM Rubredox 20.1 53 0.0011 17.1 0.7 9 143-151 19-27 (34)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.8e-18 Score=137.24 Aligned_cols=70 Identities=24% Similarity=0.693 Sum_probs=56.8
Q ss_pred hHHHhhhcCHhhhhhhhcccCCCCcccccCCCCCCCCCcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCc
Q 039522 65 DNARERRISVTQFKSLCDSRSSSSSTVARSNGGSTSCSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHST 144 (152)
Q Consensus 65 ~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~ 144 (152)
.+...+++|+..|........ . .+|+||+|+|..+++++.|||+|.||..||++|+...+..
T Consensus 208 ~k~~l~~~p~~~f~~~~~~~~-----------------~-~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~ 269 (348)
T KOG4628|consen 208 IKRLLKKLPVRTFTKGDDEDA-----------------T-DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTF 269 (348)
T ss_pred HHHHHhhCCcEEeccccccCC-----------------C-ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCcc
Confidence 466667778887776632221 2 5899999999999999999999999999999999865557
Q ss_pred ccCCCCCC
Q 039522 145 CPLCRSIL 152 (152)
Q Consensus 145 CP~Cr~~~ 152 (152)
||+||+++
T Consensus 270 CPvCK~di 277 (348)
T KOG4628|consen 270 CPVCKRDI 277 (348)
T ss_pred CCCCCCcC
Confidence 99999864
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.60 E-value=2.2e-16 Score=90.63 Aligned_cols=43 Identities=44% Similarity=1.251 Sum_probs=38.7
Q ss_pred ccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCC
Q 039522 106 ECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCR 149 (152)
Q Consensus 106 ~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr 149 (152)
+|+||++++..++.+..++|+|.||.+||.+|++. +.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 69999999998888888999999999999999985 45999997
No 3
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=8e-14 Score=107.99 Aligned_cols=50 Identities=38% Similarity=1.048 Sum_probs=44.4
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
..-+|+|||+.|..+++++.+||.|.||..|+++|+..-+..||+||+++
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~i 371 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAI 371 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCC
Confidence 44789999999999999999999999999999999974344899999875
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.37 E-value=5.4e-13 Score=84.56 Aligned_cols=45 Identities=31% Similarity=0.877 Sum_probs=34.0
Q ss_pred ccccccccccccCC----------CceEeecCCCcccHhhHHHHhcCCCCcccCCC
Q 039522 104 AMECCVCLSRFQSD----------EEVSELSCKHFFHRGCLDKWFDNKHSTCPLCR 149 (152)
Q Consensus 104 ~~~C~ICl~~~~~~----------~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr 149 (152)
+..|+||++.+... ..+...+|+|.||..||.+|++.++ +||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCCCC
Confidence 44599999999333 2233348999999999999998544 999998
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.31 E-value=1.4e-12 Score=99.49 Aligned_cols=49 Identities=33% Similarity=0.878 Sum_probs=39.1
Q ss_pred cccccccccccccCCC----ceEee-cCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDE----EVSEL-SCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~----~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
.+.+|+||++.+..+. .+..+ +|+|.||..||.+|++ .+.+||+||.++
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-~~~tCPlCR~~~ 226 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-EKNTCPVCRTPF 226 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-cCCCCCCCCCEe
Confidence 4578999999987543 12334 8999999999999998 455999999864
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=6.8e-12 Score=99.77 Aligned_cols=50 Identities=32% Similarity=0.973 Sum_probs=40.6
Q ss_pred Cccccccccccc-ccCCC---------ceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 102 SAAMECCVCLSR-FQSDE---------EVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 102 ~~~~~C~ICl~~-~~~~~---------~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
+.+..|.|||++ ++.+. +...|||||.+|..|++.|+++++ +||+||.|+
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQ-TCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQ-TCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhcc-CCCcccCcc
Confidence 366789999999 54441 334689999999999999999555 999999884
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.28 E-value=4.1e-12 Score=93.64 Aligned_cols=48 Identities=27% Similarity=0.791 Sum_probs=39.1
Q ss_pred CcccccccccccccCCCceEeecCCCcccHhhHHHHhcC---------------CCCcccCCCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDN---------------KHSTCPLCRSIL 152 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~---------------~~~~CP~Cr~~~ 152 (152)
.++.+|+||++.+..+ +.++|||.||+.||.+|+.. +...||+||.+|
T Consensus 16 ~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~I 78 (193)
T PLN03208 16 GGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78 (193)
T ss_pred CCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcC
Confidence 3567899999998765 55799999999999999842 234799999875
No 8
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.3e-11 Score=92.58 Aligned_cols=49 Identities=24% Similarity=0.745 Sum_probs=39.7
Q ss_pred CCcccccccccccccCCCceEeecCCCcccHhhHHHHhcCC--CCcccCCCCCC
Q 039522 101 CSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNK--HSTCPLCRSIL 152 (152)
Q Consensus 101 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~--~~~CP~Cr~~~ 152 (152)
.....+|.|||+.-+.+ +.+.|||.||+.||.+|++.+ ...||+||..|
T Consensus 44 ~~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~V 94 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEV 94 (230)
T ss_pred CCCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCcccccc
Confidence 45778999999986655 656899999999999999753 34689999864
No 9
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.2e-11 Score=95.53 Aligned_cols=50 Identities=30% Similarity=0.776 Sum_probs=40.9
Q ss_pred CCCCcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 99 TSCSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 99 ~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
........|.+||+..+.+ ..+||||+||+.||..|... +..||+||..+
T Consensus 234 ~i~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~ 283 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSE-KAECPLCREKF 283 (293)
T ss_pred cCCCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHcc-ccCCCcccccC
Confidence 3344667899999997776 56799999999999999974 44799999863
No 10
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.19 E-value=2.1e-11 Score=69.00 Aligned_cols=45 Identities=47% Similarity=1.142 Sum_probs=36.2
Q ss_pred ccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 106 ECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 106 ~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
+|+||++.+.. .+...+|+|.||..|+..|++..+..||+||..+
T Consensus 1 ~C~iC~~~~~~--~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFRE--PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhC--ceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 49999999832 3333469999999999999986566899999864
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.17 E-value=2.1e-11 Score=71.66 Aligned_cols=45 Identities=29% Similarity=0.831 Sum_probs=36.5
Q ss_pred ccccccccccccCCCceEeecCCCc-ccHhhHHHHhcCCCCcccCCCCCC
Q 039522 104 AMECCVCLSRFQSDEEVSELSCKHF-FHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l~C~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
+..|.||++.... +..++|||. ||..|+.+|++ ....||+||++|
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i 47 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLK-RKKKCPICRQPI 47 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhh
Confidence 4579999998544 466799999 99999999998 556999999975
No 12
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.15 E-value=3e-11 Score=68.50 Aligned_cols=39 Identities=36% Similarity=0.961 Sum_probs=30.4
Q ss_pred cccccccccCCCceEeecCCCcccHhhHHHHhcCCC---CcccCC
Q 039522 107 CCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKH---STCPLC 148 (152)
Q Consensus 107 C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~---~~CP~C 148 (152)
|+||++.|..+ +.|+|||+|+..||.+|++..+ ..||.|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999988 7789999999999999997543 369988
No 13
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.14 E-value=3.2e-11 Score=77.70 Aligned_cols=49 Identities=29% Similarity=0.758 Sum_probs=37.1
Q ss_pred cccccccccccccCC--------Cc-eEee-cCCCcccHhhHHHHhcCC--CCcccCCCCC
Q 039522 103 AAMECCVCLSRFQSD--------EE-VSEL-SCKHFFHRGCLDKWFDNK--HSTCPLCRSI 151 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~--------~~-~~~l-~C~H~fh~~Ci~~wl~~~--~~~CP~Cr~~ 151 (152)
.+..|.||...|+.. +. ...+ .|+|.||..||.+|+..+ +.+||+||++
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~ 80 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQP 80 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCe
Confidence 366799999888622 22 1223 899999999999999753 4589999986
No 14
>PHA02926 zinc finger-like protein; Provisional
Probab=99.13 E-value=1.4e-10 Score=86.88 Aligned_cols=50 Identities=30% Similarity=0.798 Sum_probs=37.6
Q ss_pred cccccccccccccCC-----CceEee-cCCCcccHhhHHHHhcCC-----CCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSD-----EEVSEL-SCKHFFHRGCLDKWFDNK-----HSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~-----~~~~~l-~C~H~fh~~Ci~~wl~~~-----~~~CP~Cr~~~ 152 (152)
.+.+|+||++....+ .....| +|+|.||..||..|.+.+ ..+||+||..+
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 567899999986432 123345 999999999999999743 23699999853
No 15
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=6.7e-11 Score=85.56 Aligned_cols=49 Identities=24% Similarity=0.690 Sum_probs=40.1
Q ss_pred CcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
.+...|+|||+.+..... ...+|||+||+.||...++..+ .||+|++.|
T Consensus 129 ~~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~-~CP~C~kkI 177 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTN-KCPTCRKKI 177 (187)
T ss_pred ccccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCC-CCCCccccc
Confidence 455789999999877533 3469999999999999998665 999999754
No 16
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.10 E-value=5.7e-11 Score=66.23 Aligned_cols=39 Identities=31% Similarity=0.990 Sum_probs=31.9
Q ss_pred cccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCC
Q 039522 107 CCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLC 148 (152)
Q Consensus 107 C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~C 148 (152)
|+||++.+.++ +..++|||.||.+|+.+|++. +.+||+|
T Consensus 1 C~iC~~~~~~~--~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDP--VVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSE--EEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCc--CEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999988773 345699999999999999986 6799998
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=99.03 E-value=2.5e-10 Score=65.33 Aligned_cols=44 Identities=32% Similarity=0.856 Sum_probs=36.8
Q ss_pred ccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCC
Q 039522 106 ECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRS 150 (152)
Q Consensus 106 ~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~ 150 (152)
.|+||++.+........++|||.||..|+.++. .....||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 499999999555566677999999999999998 35568999985
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.97 E-value=3.2e-10 Score=63.70 Aligned_cols=40 Identities=43% Similarity=1.061 Sum_probs=34.0
Q ss_pred cccccccccCCCceEeecCCCcccHhhHHHHhc-CCCCcccCC
Q 039522 107 CCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFD-NKHSTCPLC 148 (152)
Q Consensus 107 C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~-~~~~~CP~C 148 (152)
|+||++.+..+. ..++|+|.||..|+.+|++ .+...||+|
T Consensus 1 C~iC~~~~~~~~--~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999987762 3569999999999999998 556689998
No 19
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.93 E-value=8.4e-10 Score=60.21 Aligned_cols=39 Identities=38% Similarity=1.109 Sum_probs=32.2
Q ss_pred cccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCC
Q 039522 107 CCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLC 148 (152)
Q Consensus 107 C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~C 148 (152)
|+||++.. .....++|+|.||..|+..|++..+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 78998883 3446679999999999999998555689987
No 20
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=3.4e-10 Score=96.19 Aligned_cols=49 Identities=37% Similarity=0.992 Sum_probs=41.6
Q ss_pred CcccccccccccccCCCc--eEeecCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 102 SAAMECCVCLSRFQSDEE--VSELSCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~--~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
..+..|+||++.+..+.. ...++|+|+||..|+.+|++. +.+||+||..
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~ 339 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTV 339 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhh
Confidence 357789999999988654 566899999999999999985 4599999973
No 21
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2.6e-10 Score=87.35 Aligned_cols=79 Identities=27% Similarity=0.574 Sum_probs=60.7
Q ss_pred HhhhhhhhcccCCCCcccccCCCCCCCCCcccccccccccccCCC-------ceEeecCCCcccHhhHHHHhc-CCCCcc
Q 039522 74 VTQFKSLCDSRSSSSSTVARSNGGSTSCSAAMECCVCLSRFQSDE-------EVSELSCKHFFHRGCLDKWFD-NKHSTC 145 (152)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~-------~~~~l~C~H~fh~~Ci~~wl~-~~~~~C 145 (152)
-+.+...+.+..+++.+..+.++-+....++..|+||-..+.... +.-.|.|+|+||..||.-|-. .++.+|
T Consensus 194 gRdfa~icsd~mAs~iGfYs~~glPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtC 273 (328)
T KOG1734|consen 194 GRDFAEICSDYMASTIGFYSPSGLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTC 273 (328)
T ss_pred hhHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCC
Confidence 345566666666677777777777777778899999999886654 455689999999999999964 355689
Q ss_pred cCCCCCC
Q 039522 146 PLCRSIL 152 (152)
Q Consensus 146 P~Cr~~~ 152 (152)
|.|+..+
T Consensus 274 PYCKekV 280 (328)
T KOG1734|consen 274 PYCKEKV 280 (328)
T ss_pred chHHHHh
Confidence 9998653
No 22
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.89 E-value=1.9e-09 Score=65.93 Aligned_cols=44 Identities=23% Similarity=0.462 Sum_probs=38.2
Q ss_pred cccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 105 MECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 105 ~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
..|+||.+.+..+ +.++|||+|++.||.+|++. +.+||+|+.++
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~ 45 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLS-HGTDPVTGQPL 45 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHH-CCCCCCCcCCC
Confidence 4699999999886 55799999999999999985 56899999764
No 23
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.79 E-value=3.9e-09 Score=86.02 Aligned_cols=46 Identities=30% Similarity=0.740 Sum_probs=39.1
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
....|+||++.|..+ +.++|+|.||..||..|+.. +..||+||.++
T Consensus 25 ~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~ 70 (397)
T TIGR00599 25 TSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSN-QPKCPLCRAED 70 (397)
T ss_pred cccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhC-CCCCCCCCCcc
Confidence 567899999999776 45799999999999999974 44899999863
No 24
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.74 E-value=8.4e-09 Score=65.15 Aligned_cols=46 Identities=33% Similarity=0.829 Sum_probs=33.4
Q ss_pred cccccccccc-----------cCCCceEe-e-cCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 105 MECCVCLSRF-----------QSDEEVSE-L-SCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 105 ~~C~ICl~~~-----------~~~~~~~~-l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
+.|+||...+ ..+++... . .|+|.||..||.+|+..++ .||++|++
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~-~CPld~q~ 79 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKG-VCPLDRQT 79 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCC-CCCCCCce
Confidence 4566666543 34444333 2 7999999999999998644 99999985
No 25
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.4e-08 Score=77.69 Aligned_cols=47 Identities=36% Similarity=0.754 Sum_probs=38.6
Q ss_pred CcccccccccccccCCCceEeecCCCcccHhhHHH-HhcCCCCcccCCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDK-WFDNKHSTCPLCRSI 151 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~-wl~~~~~~CP~Cr~~ 151 (152)
..+..|+||++....+ ..++|||+||..||.. |-..+-..||+||+.
T Consensus 213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak 260 (271)
T COG5574 213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAK 260 (271)
T ss_pred ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhh
Confidence 4578899999987666 6679999999999999 866444459999985
No 26
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.61 E-value=2.4e-08 Score=56.74 Aligned_cols=39 Identities=33% Similarity=0.807 Sum_probs=22.3
Q ss_pred cccccccccCCC-ceEeecCCCcccHhhHHHHhcCC---CCccc
Q 039522 107 CCVCLSRFQSDE-EVSELSCKHFFHRGCLDKWFDNK---HSTCP 146 (152)
Q Consensus 107 C~ICl~~~~~~~-~~~~l~C~H~fh~~Ci~~wl~~~---~~~CP 146 (152)
|+||.+ |...+ ....|+|||+|+++|+.++++.+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 76644 34567999999999999999743 44677
No 27
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1e-08 Score=64.23 Aligned_cols=48 Identities=29% Similarity=0.830 Sum_probs=35.4
Q ss_pred ccccccccccccCC--------CceE-ee-cCCCcccHhhHHHHhcC--CCCcccCCCCC
Q 039522 104 AMECCVCLSRFQSD--------EEVS-EL-SCKHFFHRGCLDKWFDN--KHSTCPLCRSI 151 (152)
Q Consensus 104 ~~~C~ICl~~~~~~--------~~~~-~l-~C~H~fh~~Ci~~wl~~--~~~~CP~Cr~~ 151 (152)
+.+|-||.-.|..- +... .+ .|.|.||..||.+|+.. .+..||+||+.
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~ 79 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQT 79 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhe
Confidence 34799998887432 3222 23 79999999999999964 34579999985
No 28
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2e-08 Score=82.67 Aligned_cols=51 Identities=31% Similarity=0.839 Sum_probs=38.7
Q ss_pred CcccccccccccccCCC--------------ceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 102 SAAMECCVCLSRFQSDE--------------EVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~--------------~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
....+|+|||.++.--. ..+..||.|+||..|+.+|....+-.||+||.++
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pL 633 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPL 633 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCC
Confidence 35567999999763221 1223499999999999999985455899999975
No 29
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.57 E-value=3.7e-08 Score=80.28 Aligned_cols=50 Identities=40% Similarity=0.914 Sum_probs=39.8
Q ss_pred CCCCCcccccccccccccCCC-ceEeecCCCcccHhhHHHHhcCCCCcccCCCC
Q 039522 98 STSCSAAMECCVCLSRFQSDE-EVSELSCKHFFHRGCLDKWFDNKHSTCPLCRS 150 (152)
Q Consensus 98 ~~~~~~~~~C~ICl~~~~~~~-~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~ 150 (152)
.....+..+|+|||+.+...- .++...|.|.||..|+.+|. ..+||+||-
T Consensus 169 ~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~---~~scpvcR~ 219 (493)
T KOG0804|consen 169 PTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW---DSSCPVCRY 219 (493)
T ss_pred CCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcc---cCcChhhhh
Confidence 334457789999999997764 33445899999999999995 459999984
No 30
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=3.9e-08 Score=81.32 Aligned_cols=46 Identities=28% Similarity=0.785 Sum_probs=36.5
Q ss_pred ccccccccccccCCCceEeecCCCcccHhhHHHHhcC----CCCcccCCCCCC
Q 039522 104 AMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDN----KHSTCPLCRSIL 152 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~----~~~~CP~Cr~~~ 152 (152)
+..||||+++...+ ..+.|||+||..||-+.+.. +...||+||..|
T Consensus 186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I 235 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTI 235 (513)
T ss_pred CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhc
Confidence 67899999987665 44569999999999987754 245799999754
No 31
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.53 E-value=7.9e-08 Score=75.81 Aligned_cols=49 Identities=22% Similarity=0.545 Sum_probs=36.3
Q ss_pred cccccccccc-ccCCCc-eEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 104 AMECCVCLSR-FQSDEE-VSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 104 ~~~C~ICl~~-~~~~~~-~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
+..||+|... +.+++. +...+|||.||..|+...+..+...||.|+.++
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~l 53 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPL 53 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCcc
Confidence 3579999995 333332 222279999999999997766666899998764
No 32
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.51 E-value=9.5e-08 Score=60.40 Aligned_cols=47 Identities=19% Similarity=0.447 Sum_probs=37.0
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
+...|+|+.+-+..+ +.+++||.|.+.+|..|+..++.+||+|+.++
T Consensus 3 ~~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l 49 (73)
T PF04564_consen 3 DEFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPL 49 (73)
T ss_dssp GGGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-
T ss_pred cccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcC
Confidence 457899999999887 77899999999999999986577999998764
No 33
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.45 E-value=1.6e-07 Score=54.80 Aligned_cols=43 Identities=23% Similarity=0.855 Sum_probs=32.1
Q ss_pred ccccccccccCCCceEeecCC-----CcccHhhHHHHhcCC-CCcccCCC
Q 039522 106 ECCVCLSRFQSDEEVSELSCK-----HFFHRGCLDKWFDNK-HSTCPLCR 149 (152)
Q Consensus 106 ~C~ICl~~~~~~~~~~~l~C~-----H~fh~~Ci~~wl~~~-~~~CP~Cr 149 (152)
.|.||++ ...++.....||. |.+|..|+.+|+... +.+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998 3334444556884 889999999999643 45899995
No 34
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.1e-07 Score=63.02 Aligned_cols=48 Identities=27% Similarity=0.753 Sum_probs=34.3
Q ss_pred cccccccccccc-------------cCCCceEee-cCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 103 AAMECCVCLSRF-------------QSDEEVSEL-SCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 103 ~~~~C~ICl~~~-------------~~~~~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
....|+||..-+ ...+-++.. -|+|.||..||.+|++.++ .||+|.++
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~-vCPLdn~e 106 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRN-VCPLDNKE 106 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcC-cCCCcCcc
Confidence 456799998743 111222333 7999999999999998555 99999653
No 35
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.42 E-value=3.4e-08 Score=62.02 Aligned_cols=49 Identities=35% Similarity=0.753 Sum_probs=22.4
Q ss_pred cccccccccccc-CCCceEe----ecCCCcccHhhHHHHhcC----CC------CcccCCCCCC
Q 039522 104 AMECCVCLSRFQ-SDEEVSE----LSCKHFFHRGCLDKWFDN----KH------STCPLCRSIL 152 (152)
Q Consensus 104 ~~~C~ICl~~~~-~~~~~~~----l~C~H~fh~~Ci~~wl~~----~~------~~CP~Cr~~~ 152 (152)
+.+|.||+..+. .+..... -.|+..||..|+.+||.. ++ ..||.|+++|
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 357999999876 3322121 169999999999999853 11 2599999864
No 36
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.3e-07 Score=72.83 Aligned_cols=44 Identities=34% Similarity=0.883 Sum_probs=39.0
Q ss_pred CcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCR 149 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr 149 (152)
.+...|+||++.|..+ ..++|+|.||..|+..++. ....||.||
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWE-GPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcC---ccccccchHhHHHHHHhcC-CCcCCcccC
Confidence 3667899999999998 6679999999999999987 556899998
No 37
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.38 E-value=1.2e-07 Score=75.03 Aligned_cols=46 Identities=24% Similarity=0.675 Sum_probs=39.3
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
....|.||.+.|..+ +++||+|.||.-||...+.+ +..||.|+.++
T Consensus 22 ~lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~ 67 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSY-KPQCPTCCVTV 67 (442)
T ss_pred HHHHHhHHHHHhcCc---eeccccchHHHHHHHHHhcc-CCCCCceeccc
Confidence 446799999999987 66799999999999999984 55999998753
No 38
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.32 E-value=1.9e-07 Score=82.09 Aligned_cols=51 Identities=43% Similarity=0.911 Sum_probs=38.1
Q ss_pred Cccccccccccccc-CCCc---eEeecCCCcccHhhHHHHhcC-CCCcccCCCCCC
Q 039522 102 SAAMECCVCLSRFQ-SDEE---VSELSCKHFFHRGCLDKWFDN-KHSTCPLCRSIL 152 (152)
Q Consensus 102 ~~~~~C~ICl~~~~-~~~~---~~~l~C~H~fh~~Ci~~wl~~-~~~~CP~Cr~~~ 152 (152)
.+..+|+||...+. .... -+.-.|.|.||..|+.+|++. ++.+||+||..+
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 46678999998775 2211 123369999999999999975 456899999764
No 39
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.24 E-value=5.7e-07 Score=70.02 Aligned_cols=45 Identities=27% Similarity=0.720 Sum_probs=38.5
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
....|-||-+.|..+ ..++|||.||.-||...+. .+..||+||.+
T Consensus 24 s~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~-~qp~CP~Cr~~ 68 (391)
T COG5432 24 SMLRCRICDCRISIP---CETTCGHTFCSLCIRRHLG-TQPFCPVCRED 68 (391)
T ss_pred hHHHhhhhhheeecc---eecccccchhHHHHHHHhc-CCCCCcccccc
Confidence 446799999999887 5569999999999999997 55689999975
No 40
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=5.1e-07 Score=70.45 Aligned_cols=47 Identities=28% Similarity=0.600 Sum_probs=40.0
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
...+|+||+.....+ +.+.|+|.||..||+--..+...+|++||.+|
T Consensus 6 ~~~eC~IC~nt~n~P---v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pi 52 (324)
T KOG0824|consen 6 KKKECLICYNTGNCP---VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPI 52 (324)
T ss_pred cCCcceeeeccCCcC---ccccccchhhhhhhcchhhcCCCCCceecCCC
Confidence 556899999886655 67899999999999988777777899999986
No 41
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.2e-06 Score=70.56 Aligned_cols=46 Identities=35% Similarity=1.049 Sum_probs=34.4
Q ss_pred ccccccccccccCCCceEee-cCCCcccHhhHHHHhcCCC--CcccCCC
Q 039522 104 AMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFDNKH--STCPLCR 149 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~~~--~~CP~Cr 149 (152)
...|.||.+-+-....+..+ .|||+||..|+.+|+.+.. ..||+||
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 35799994444444444445 5999999999999998743 4799998
No 42
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.06 E-value=8.6e-07 Score=54.09 Aligned_cols=42 Identities=26% Similarity=0.840 Sum_probs=23.0
Q ss_pred ccccccccccccCCCceEee-cCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 104 AMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
...|++|.+.+..+ +.+ .|.|+||..||..-+. ..||+|+.|
T Consensus 7 lLrCs~C~~~l~~p---v~l~~CeH~fCs~Ci~~~~~---~~CPvC~~P 49 (65)
T PF14835_consen 7 LLRCSICFDILKEP---VCLGGCEHIFCSSCIRDCIG---SECPVCHTP 49 (65)
T ss_dssp TTS-SSS-S--SS----B---SSS--B-TTTGGGGTT---TB-SSS--B
T ss_pred hcCCcHHHHHhcCC---ceeccCccHHHHHHhHHhcC---CCCCCcCCh
Confidence 35799999998876 444 8999999999988553 369999876
No 43
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=4.6e-07 Score=72.09 Aligned_cols=47 Identities=30% Similarity=0.631 Sum_probs=39.7
Q ss_pred cccccccccccccCCCceEee-cCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
.+..|+||++-++.. +.. .|.|.||.+||.+-++..+..||.||+.+
T Consensus 42 ~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l 89 (381)
T KOG0311|consen 42 IQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKL 89 (381)
T ss_pred hhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhc
Confidence 456799999998765 334 79999999999999988888999999853
No 44
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.1e-06 Score=69.02 Aligned_cols=50 Identities=30% Similarity=0.818 Sum_probs=38.2
Q ss_pred CcccccccccccccCCC----ceEee-cCCCcccHhhHHHHhcCCC------CcccCCCCC
Q 039522 102 SAAMECCVCLSRFQSDE----EVSEL-SCKHFFHRGCLDKWFDNKH------STCPLCRSI 151 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~----~~~~l-~C~H~fh~~Ci~~wl~~~~------~~CP~Cr~~ 151 (152)
..+.+|.||++...... ...++ +|.|.||..||.+|-+..+ +.||.||.+
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~ 219 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVP 219 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCc
Confidence 46788999999875543 12234 7999999999999985433 589999975
No 45
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=2.3e-06 Score=73.84 Aligned_cols=47 Identities=23% Similarity=0.787 Sum_probs=38.5
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
+-..|++|-..+.. +++..|+|+||..|+.+-+..++..||.|-+++
T Consensus 642 ~~LkCs~Cn~R~Kd---~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aF 688 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKD---AVITKCGHVFCEECVQTRYETRQRKCPKCNAAF 688 (698)
T ss_pred hceeCCCccCchhh---HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 44679999866544 355699999999999999988888999998764
No 46
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=6.7e-06 Score=65.66 Aligned_cols=47 Identities=30% Similarity=0.804 Sum_probs=36.8
Q ss_pred CcccccccccccccCCCceEeecCCCc-ccHhhHHHHhcCCCCcccCCCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSELSCKHF-FHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l~C~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
+...+|.||+.+-.+ +..|||.|. .|..|.+... .++..||+||++|
T Consensus 288 ~~gkeCVIClse~rd---t~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi 335 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPI 335 (349)
T ss_pred cCCCeeEEEecCCcc---eEEecchhhehhHhHHHHHH-HhhcCCCccccch
Confidence 456789999998544 477899996 6889988865 3555899999975
No 47
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=2.4e-06 Score=50.29 Aligned_cols=45 Identities=24% Similarity=0.612 Sum_probs=33.7
Q ss_pred cccccccccccCCCceEeecCCCc-ccHhhHHHHhcCCCCcccCCCCCC
Q 039522 105 MECCVCLSRFQSDEEVSELSCKHF-FHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 105 ~~C~ICl~~~~~~~~~~~l~C~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
.+|.||++.-.+. +.-.|||. .|.+|-.+.++..+..||+||++|
T Consensus 8 dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred cceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 7899998864332 22379995 578888877766777999999875
No 48
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.87 E-value=3.7e-06 Score=72.90 Aligned_cols=47 Identities=30% Similarity=0.614 Sum_probs=37.3
Q ss_pred ccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 104 AMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
...|++|+..+..+......+|+|.||..|+..|-+..+ +||+||..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aq-TCPiDR~E 169 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQ-TCPVDRGE 169 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcc-cCchhhhh
Confidence 356888888776665444558999999999999988655 99999975
No 49
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=1.9e-05 Score=64.17 Aligned_cols=48 Identities=29% Similarity=0.931 Sum_probs=37.2
Q ss_pred cccccccccccccCCC--ceEeecCCCcccHhhHHHHhcC-CCCcccCCCC
Q 039522 103 AAMECCVCLSRFQSDE--EVSELSCKHFFHRGCLDKWFDN-KHSTCPLCRS 150 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~--~~~~l~C~H~fh~~Ci~~wl~~-~~~~CP~Cr~ 150 (152)
...+|+||++.+..+- .+..+.|||.|..+||++|+.. ....||.|..
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ 53 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSG 53 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCC
Confidence 4568999999986654 4445699999999999999942 1247999975
No 50
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.76 E-value=2.2e-05 Score=47.22 Aligned_cols=43 Identities=21% Similarity=0.612 Sum_probs=28.7
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcC-CCCcccC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDN-KHSTCPL 147 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~-~~~~CP~ 147 (152)
....|||.+..|.++ ++...|+|.|-++.|.+|++. +...||+
T Consensus 10 ~~~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 557899999999877 444589999999999999943 3457998
No 51
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=97.68 E-value=4.2e-05 Score=44.18 Aligned_cols=46 Identities=22% Similarity=0.525 Sum_probs=24.2
Q ss_pred cccccccccCCCceE-eecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 107 CCVCLSRFQSDEEVS-ELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 107 C~ICl~~~~~~~~~~-~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
|++|.+++...+.-. --+|++.++..|...-++..+..||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999985544322 2278999999999998865567999999863
No 52
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=5.4e-05 Score=57.18 Aligned_cols=49 Identities=29% Similarity=0.663 Sum_probs=40.4
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcC-------CCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDN-------KHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~-------~~~~CP~Cr~~~ 152 (152)
....|..|-..+..++.++ |.|-|.||++|+..|-.. ...+||-|..+|
T Consensus 49 Y~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 6677999999999998765 779999999999999743 223799998764
No 53
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=5.9e-05 Score=61.88 Aligned_cols=47 Identities=38% Similarity=0.881 Sum_probs=39.9
Q ss_pred CcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
..+.+|.||+..+..+ +.++|||.||..||.+-+. +...||.||.++
T Consensus 82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l 128 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLD-QETECPLCRDEL 128 (398)
T ss_pred cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhc-cCCCCccccccc
Confidence 5678899999988877 5669999999999999776 566899999764
No 54
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.45 E-value=8.6e-05 Score=61.03 Aligned_cols=49 Identities=33% Similarity=0.772 Sum_probs=40.6
Q ss_pred CCcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 101 CSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 101 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
.+....|++|+..+..+-.. ..|||.||..|+..|+.. +..||.|+..+
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~--~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~ 66 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQT--TTCGHRFCAGCLLESLSN-HQKCPVCRQEL 66 (391)
T ss_pred CcccccCccccccccCCCCC--CCCCCcccccccchhhcc-CcCCccccccc
Confidence 34668899999999887332 589999999999999985 66999998753
No 55
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.45 E-value=3.4e-05 Score=60.43 Aligned_cols=36 Identities=28% Similarity=0.795 Sum_probs=31.9
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHh
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWF 138 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl 138 (152)
....|.|||.-|..++....+.|-|.||..|+.+.+
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl 149 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYL 149 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHH
Confidence 456799999999999888888999999999998765
No 56
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.44 E-value=4.4e-05 Score=62.00 Aligned_cols=45 Identities=33% Similarity=0.854 Sum_probs=34.3
Q ss_pred cccccccccccCCCceEeecCCCcccHhhHHHHhcCC-CCcccCCCCCC
Q 039522 105 MECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNK-HSTCPLCRSIL 152 (152)
Q Consensus 105 ~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~-~~~CP~Cr~~~ 152 (152)
.-|-||-+. ...+.+=||||..|..|+..|.... ..+||+||..|
T Consensus 370 eLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEI 415 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEI 415 (563)
T ss_pred HHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEe
Confidence 359999775 3344445999999999999998543 45899999754
No 57
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.00033 Score=54.33 Aligned_cols=50 Identities=24% Similarity=0.365 Sum_probs=37.1
Q ss_pred CCCcccccccccccccCCCceEeecCCCcccHhhHHHHhcC-CCCcccCCCCC
Q 039522 100 SCSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDN-KHSTCPLCRSI 151 (152)
Q Consensus 100 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~-~~~~CP~Cr~~ 151 (152)
....+.+|++|-+.-..+. ...+|+|+||.-||.+-+.. ...+||.|-.+
T Consensus 235 ~~t~~~~C~~Cg~~PtiP~--~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~ 285 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIPH--VIGKCGHIYCYYCIATSRLWDASFTCPLCGEN 285 (298)
T ss_pred cccCCceeeccCCCCCCCe--eeccccceeehhhhhhhhcchhhcccCccCCC
Confidence 4456788999999866652 23479999999999986532 23589999765
No 58
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=97.15 E-value=0.00018 Score=50.35 Aligned_cols=35 Identities=23% Similarity=0.680 Sum_probs=30.0
Q ss_pred ccccccccccccCCCceEeecCC------CcccHhhHHHHh
Q 039522 104 AMECCVCLSRFQSDEEVSELSCK------HFFHRGCLDKWF 138 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l~C~------H~fh~~Ci~~wl 138 (152)
..+|.||++.+...+.++.++|+ |.||.+|+.+|-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 46899999999986677777775 899999999994
No 59
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.14 E-value=0.00025 Score=65.60 Aligned_cols=51 Identities=27% Similarity=0.729 Sum_probs=39.6
Q ss_pred CcccccccccccccCCCceEeecCCCcccHhhHHHHhcC---------CCCcccCCCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDN---------KHSTCPLCRSIL 152 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~---------~~~~CP~Cr~~~ 152 (152)
+.+..|-||+.+--.....+.|.|+|.||..|...-+.+ +-.+||+|+.+|
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence 466789999987655556677899999999999876653 224799999875
No 60
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.01 E-value=0.00023 Score=57.81 Aligned_cols=47 Identities=30% Similarity=0.777 Sum_probs=36.9
Q ss_pred ccccccccccccCCC-ceEeecCCCcccHhhHHHHhcC-CCCcccCCCC
Q 039522 104 AMECCVCLSRFQSDE-EVSELSCKHFFHRGCLDKWFDN-KHSTCPLCRS 150 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~-~~~~l~C~H~fh~~Ci~~wl~~-~~~~CP~Cr~ 150 (152)
+..|..|-+.+...+ ..-.|||.|+||..|+.+.+.+ ...+||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 456999999876554 4456799999999999998853 3458999983
No 61
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.93 E-value=0.00087 Score=48.12 Aligned_cols=48 Identities=21% Similarity=0.733 Sum_probs=33.3
Q ss_pred CcccccccccccccCCCceEeecCCC---cccHhhHHHHhcCC-CCcccCCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSELSCKH---FFHRGCLDKWFDNK-HSTCPLCRSI 151 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l~C~H---~fh~~Ci~~wl~~~-~~~CP~Cr~~ 151 (152)
..+..|-||.++-.. ....-.|.. ..|.+|+.+|+..+ ..+|++|+++
T Consensus 6 ~~~~~CRIC~~~~~~--~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~ 57 (162)
T PHA02825 6 LMDKCCWICKDEYDV--VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGP 57 (162)
T ss_pred CCCCeeEecCCCCCC--ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCe
Confidence 466789999988432 211113444 66999999999653 4579999875
No 62
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.88 E-value=0.00059 Score=39.33 Aligned_cols=41 Identities=34% Similarity=0.959 Sum_probs=26.5
Q ss_pred cccccccccCCCceEeecC--CC---cccHhhHHHHhcC-CCCcccCC
Q 039522 107 CCVCLSRFQSDEEVSELSC--KH---FFHRGCLDKWFDN-KHSTCPLC 148 (152)
Q Consensus 107 C~ICl~~~~~~~~~~~l~C--~H---~fh~~Ci~~wl~~-~~~~CP~C 148 (152)
|-||++.-..... ...|| .- ..|..|+.+|+.. ++.+|++|
T Consensus 1 CrIC~~~~~~~~~-li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEP-LISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCc-eecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6789888666542 23455 33 7899999999964 34579987
No 63
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.00076 Score=53.20 Aligned_cols=47 Identities=30% Similarity=0.717 Sum_probs=39.7
Q ss_pred cccccccccccCCC---ceEeecCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 105 MECCVCLSRFQSDE---EVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 105 ~~C~ICl~~~~~~~---~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
..|-||-++|...+ ..+.|.|||.|+..|+.+.+.+....||.||.+
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~ 53 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRET 53 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCc
Confidence 57999999998774 345679999999999999988777789999976
No 64
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=0.0012 Score=50.61 Aligned_cols=49 Identities=18% Similarity=0.318 Sum_probs=42.2
Q ss_pred cccccccccccccCCCceEee-cCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
....|+||.+.+.+......| +|||+|+.+|.++.+. ....||+|-.++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~pl 269 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPL 269 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcC
Confidence 456799999999999888888 9999999999999987 455899997653
No 65
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.78 E-value=0.00066 Score=50.48 Aligned_cols=42 Identities=21% Similarity=0.583 Sum_probs=35.3
Q ss_pred cccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCC
Q 039522 105 MECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRS 150 (152)
Q Consensus 105 ~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~ 150 (152)
..|.||-++|..+ +...|||.||..|..+-++. ...|-+|-+
T Consensus 197 F~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk 238 (259)
T COG5152 197 FLCGICKKDYESP---VVTECGHSFCSLCAIRKYQK-GDECGVCGK 238 (259)
T ss_pred eeehhchhhccch---hhhhcchhHHHHHHHHHhcc-CCcceecch
Confidence 4799999999987 56689999999999988874 448999854
No 66
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.00082 Score=53.95 Aligned_cols=52 Identities=27% Similarity=0.491 Sum_probs=36.8
Q ss_pred CCCCCCCCCcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 94 SNGGSTSCSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 94 ~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
.++..........|.||+++..+ ...++|||.-| |..--. ...+||+||+.|
T Consensus 295 ~~~~~~~~~~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs~--~l~~CPvCR~rI 346 (355)
T KOG1571|consen 295 ENGTFRELPQPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCSK--HLPQCPVCRQRI 346 (355)
T ss_pred ccCcccccCCCCceEEecCCccc---eeeecCCcEEE--chHHHh--hCCCCchhHHHH
Confidence 44455566677789999998665 46779999976 655433 334699999753
No 67
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.74 E-value=0.00055 Score=45.70 Aligned_cols=33 Identities=21% Similarity=0.612 Sum_probs=26.4
Q ss_pred CcccccccccccccCCCceEeecCCCcccHhhHH
Q 039522 102 SAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLD 135 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~ 135 (152)
++...|++|...+..+ .....||||+||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~~-~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNS-VFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCc-eEEEeCCCeEEeccccc
Confidence 3566799999999873 44455999999999975
No 68
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.72 E-value=0.00081 Score=53.78 Aligned_cols=49 Identities=18% Similarity=0.401 Sum_probs=38.5
Q ss_pred cccccccccccccCCCceEee-cCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
++.-|+.|++++...++-..- +||...|+-|...--+.-+..||-||+.
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~ 62 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRK 62 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhh
Confidence 444599999999888764433 8999999999877666556789999974
No 69
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.66 E-value=0.00044 Score=54.89 Aligned_cols=47 Identities=21% Similarity=0.642 Sum_probs=37.9
Q ss_pred CcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
+...+|.+|-..|..... +.-|-|.||+.||.+.+.. ...||.|...
T Consensus 13 n~~itC~LC~GYliDATT--I~eCLHTFCkSCivk~l~~-~~~CP~C~i~ 59 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATT--ITECLHTFCKSCIVKYLEE-SKYCPTCDIV 59 (331)
T ss_pred ccceehhhccceeecchh--HHHHHHHHHHHHHHHHHHH-hccCCcccee
Confidence 366789999998877632 2379999999999999985 5599999754
No 70
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=96.65 E-value=0.0009 Score=58.93 Aligned_cols=48 Identities=35% Similarity=0.842 Sum_probs=37.5
Q ss_pred cccccccccccccCCCceEee-cCCCcccHhhHHHHhcCCC------CcccCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFDNKH------STCPLCRS 150 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~~~------~~CP~Cr~ 150 (152)
...+|.||.+.+.....+..- .|-|+||..||.+|-.... -.||.|+.
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 447899999999887665544 7899999999999975421 25999973
No 71
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0015 Score=52.51 Aligned_cols=48 Identities=21% Similarity=0.455 Sum_probs=36.8
Q ss_pred CCCcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 100 SCSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 100 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
+..++..|+||... +-..+..||+|.-|..||.+-+-+ .+.|=.|++.
T Consensus 418 p~sEd~lCpICyA~---pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktT 465 (489)
T KOG4692|consen 418 PDSEDNLCPICYAG---PINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTT 465 (489)
T ss_pred CCcccccCcceecc---cchhhccCCCCchHHHHHHHHHhc-CCeeeEecce
Confidence 44577889999765 333355699999999999999874 4489999864
No 72
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.58 E-value=0.0029 Score=49.24 Aligned_cols=51 Identities=22% Similarity=0.458 Sum_probs=40.5
Q ss_pred CCCcccccccccccccCCCceEee-cCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 100 SCSAAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 100 ~~~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
.......|||...+|......+.+ +|||+|...++...- ....||+|-.++
T Consensus 109 ~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f 160 (260)
T PF04641_consen 109 NSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPF 160 (260)
T ss_pred cCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCcc
Confidence 345667899999999766666777 999999999999962 344799997764
No 73
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0012 Score=53.91 Aligned_cols=47 Identities=26% Similarity=0.730 Sum_probs=35.5
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcC-------CCCcccCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDN-------KHSTCPLCR 149 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~-------~~~~CP~Cr 149 (152)
.-..|.||+++.........+||+|+||+.|....++. +...||-+.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK 236 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence 34679999999765566667799999999999998743 223587654
No 74
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.0072 Score=48.15 Aligned_cols=44 Identities=20% Similarity=0.399 Sum_probs=34.2
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCR 149 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr 149 (152)
....|+||+....++..+. --|-+||..|+.+.+. .+..||+=-
T Consensus 299 ~~~~CpvClk~r~Nptvl~--vSGyVfCY~Ci~~Yv~-~~~~CPVT~ 342 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLE--VSGYVFCYPCIFSYVV-NYGHCPVTG 342 (357)
T ss_pred ccccChhHHhccCCCceEE--ecceEEeHHHHHHHHH-hcCCCCccC
Confidence 4567999999988873222 3599999999999997 566999843
No 75
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.0011 Score=52.03 Aligned_cols=43 Identities=26% Similarity=0.630 Sum_probs=36.2
Q ss_pred cccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 105 MECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 105 ~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
..|-||...|..+ +...|+|.||..|..+-++ ....|.+|-++
T Consensus 242 f~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~q-k~~~c~vC~~~ 284 (313)
T KOG1813|consen 242 FKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQ-KGEKCYVCSQQ 284 (313)
T ss_pred ccccccccccccc---hhhcCCceeehhhhccccc-cCCcceecccc
Confidence 4599999999987 6679999999999998887 34489999764
No 76
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=96.37 E-value=0.0021 Score=36.35 Aligned_cols=42 Identities=26% Similarity=0.753 Sum_probs=23.1
Q ss_pred cccccccccCCCceEeecCCCcccHhhHHHHhcCCCC-cccCC
Q 039522 107 CCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHS-TCPLC 148 (152)
Q Consensus 107 C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~-~CP~C 148 (152)
|.+|.+-...+.....-.|+-.+|..|+..+++.+.. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 6677777766633322358889999999999975443 59987
No 77
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.31 E-value=0.0015 Score=55.09 Aligned_cols=49 Identities=29% Similarity=0.670 Sum_probs=36.8
Q ss_pred CCCcccccccccccccCCCceEeecCCCcccHhhHHHHhcC----CCCcccCCCCC
Q 039522 100 SCSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDN----KHSTCPLCRSI 151 (152)
Q Consensus 100 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~----~~~~CP~Cr~~ 151 (152)
...+..+|.+|.++-+.. ....|.|.||+.|+..+... .+-+||+|-..
T Consensus 532 enk~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~ 584 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIG 584 (791)
T ss_pred cccCceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccc
Confidence 334667899999875443 55689999999999887643 45689999654
No 78
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=96.08 E-value=0.0036 Score=49.74 Aligned_cols=45 Identities=24% Similarity=0.601 Sum_probs=35.0
Q ss_pred CCCcccccccccccccCCCceEeecC--CCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 100 SCSAAMECCVCLSRFQSDEEVSELSC--KHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 100 ~~~~~~~C~ICl~~~~~~~~~~~l~C--~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
......+||||.+.+..+ +.+| ||..|..|-.+- ...||.||.++
T Consensus 44 ~~~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~~~----~~~CP~Cr~~~ 90 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRTKV----SNKCPTCRLPI 90 (299)
T ss_pred cchhhccCchhhccCccc----ceecCCCcEehhhhhhhh----cccCCcccccc
Confidence 344667899999999886 4567 799999997653 34899999875
No 79
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.02 E-value=0.0031 Score=37.33 Aligned_cols=42 Identities=21% Similarity=0.536 Sum_probs=29.0
Q ss_pred cccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 105 MECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 105 ~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
..|-.|...- .+-..++|+|..+..|..-+ +-.-||+|-+++
T Consensus 8 ~~~~~~~~~~---~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~ 49 (55)
T PF14447_consen 8 QPCVFCGFVG---TKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPF 49 (55)
T ss_pred eeEEEccccc---cccccccccceeeccccChh---hccCCCCCCCcc
Confidence 4466665542 23356799999999997765 334799998764
No 80
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.0064 Score=44.59 Aligned_cols=30 Identities=30% Similarity=0.975 Sum_probs=24.3
Q ss_pred ecCCCcccHhhHHHHhcC----CC------CcccCCCCCC
Q 039522 123 LSCKHFFHRGCLDKWFDN----KH------STCPLCRSIL 152 (152)
Q Consensus 123 l~C~H~fh~~Ci~~wl~~----~~------~~CP~Cr~~~ 152 (152)
..||..||.-|+..|++. ++ ..||.|..||
T Consensus 188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pi 227 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPI 227 (234)
T ss_pred cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcc
Confidence 479999999999999864 22 2599998875
No 81
>PHA03096 p28-like protein; Provisional
Probab=95.87 E-value=0.0044 Score=48.92 Aligned_cols=46 Identities=26% Similarity=0.490 Sum_probs=32.3
Q ss_pred cccccccccccCC----CceEee-cCCCcccHhhHHHHhcCCC--CcccCCCC
Q 039522 105 MECCVCLSRFQSD----EEVSEL-SCKHFFHRGCLDKWFDNKH--STCPLCRS 150 (152)
Q Consensus 105 ~~C~ICl~~~~~~----~~~~~l-~C~H~fh~~Ci~~wl~~~~--~~CP~Cr~ 150 (152)
..|.||++..... .....| .|.|.||..|+..|..... .+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 5799999986543 223345 7999999999999985432 24666553
No 82
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=0.0045 Score=54.75 Aligned_cols=41 Identities=27% Similarity=0.767 Sum_probs=32.8
Q ss_pred ccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCC
Q 039522 104 AMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRS 150 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~ 150 (152)
...|..|-..++.| .+...|+|.||..|+.. +...||-|+.
T Consensus 840 ~skCs~C~~~LdlP--~VhF~CgHsyHqhC~e~----~~~~CP~C~~ 880 (933)
T KOG2114|consen 840 VSKCSACEGTLDLP--FVHFLCGHSYHQHCLED----KEDKCPKCLP 880 (933)
T ss_pred eeeecccCCccccc--eeeeecccHHHHHhhcc----CcccCCccch
Confidence 36799999998877 33448999999999982 4558999985
No 83
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.0035 Score=45.24 Aligned_cols=29 Identities=24% Similarity=0.791 Sum_probs=26.5
Q ss_pred cccccccccccccCCCceEeecCCCcccH
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHR 131 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~ 131 (152)
...+|.||+|++..++.+..|||-.+||+
T Consensus 176 dkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccCCCceeccceEEEeec
Confidence 44689999999999999999999999996
No 84
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.002 Score=50.58 Aligned_cols=40 Identities=25% Similarity=0.740 Sum_probs=29.3
Q ss_pred ccccccccccccCCCceEeecCCCcc-cHhhHHHHhcCCCCcccCCCCC
Q 039522 104 AMECCVCLSRFQSDEEVSELSCKHFF-HRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l~C~H~f-h~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
..-|+||++. +.....|+|||.. |..|-.+ ...||+||+.
T Consensus 300 ~~LC~ICmDa---P~DCvfLeCGHmVtCt~CGkr-----m~eCPICRqy 340 (350)
T KOG4275|consen 300 RRLCAICMDA---PRDCVFLECGHMVTCTKCGKR-----MNECPICRQY 340 (350)
T ss_pred HHHHHHHhcC---CcceEEeecCcEEeehhhccc-----cccCchHHHH
Confidence 5679999886 5556788999964 5666543 2379999974
No 85
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.014 Score=47.63 Aligned_cols=46 Identities=22% Similarity=0.476 Sum_probs=38.8
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCCC--CcccCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKH--STCPLC 148 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~--~~CP~C 148 (152)
....|||=.+.-........|.|||++.++.+.+..+++. ..||.|
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCC
Confidence 4567999888777767778889999999999999988766 679999
No 86
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.35 E-value=0.0081 Score=46.39 Aligned_cols=51 Identities=24% Similarity=0.745 Sum_probs=34.7
Q ss_pred CCcccccccccccccCCCceEee-cC-----CCcccHhhHHHHhcCCC-------CcccCCCCC
Q 039522 101 CSAAMECCVCLSRFQSDEEVSEL-SC-----KHFFHRGCLDKWFDNKH-------STCPLCRSI 151 (152)
Q Consensus 101 ~~~~~~C~ICl~~~~~~~~~~~l-~C-----~H~fh~~Ci~~wl~~~~-------~~CP~Cr~~ 151 (152)
...+.-|=||+..=++....... || .|=.|..|+..|+..++ -+||.|++.
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTE 80 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTE 80 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcch
Confidence 34566799998874444322223 66 47799999999996532 269999874
No 87
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=95.28 E-value=0.013 Score=40.88 Aligned_cols=47 Identities=19% Similarity=0.533 Sum_probs=35.5
Q ss_pred cccccccccccccCCCceEee----cCCCcccHhhHHHHhcC--CCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSEL----SCKHFFHRGCLDKWFDN--KHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l----~C~H~fh~~Ci~~wl~~--~~~~CP~Cr~~~ 152 (152)
...+|.||.+.-.+. +.| -||-..|..|....++. -+..||+|++.+
T Consensus 79 ~lYeCnIC~etS~ee---~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSF 131 (140)
T PF05290_consen 79 KLYECNICKETSAEE---RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSF 131 (140)
T ss_pred CceeccCcccccchh---hcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccc
Confidence 667899999975554 334 28999999998886643 456899999753
No 88
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.07 E-value=0.027 Score=45.46 Aligned_cols=48 Identities=23% Similarity=0.538 Sum_probs=34.6
Q ss_pred CCcccccccccccccCCCceEeecCCCcccHhhHHHHhc-CCCCcccCCCCC
Q 039522 101 CSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFD-NKHSTCPLCRSI 151 (152)
Q Consensus 101 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~-~~~~~CP~Cr~~ 151 (152)
+.+..-|-||-+.+.- ...+||+|..|..|..+.-. +.+..||+||+.
T Consensus 58 DEen~~C~ICA~~~TY---s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 58 DEENMNCQICAGSTTY---SARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred ccccceeEEecCCceE---EEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 3455679999877543 24569999999999876531 245589999974
No 89
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.90 E-value=0.015 Score=45.97 Aligned_cols=45 Identities=20% Similarity=0.581 Sum_probs=35.8
Q ss_pred ccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCC
Q 039522 104 AMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRS 150 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~ 150 (152)
...|+.|..-+.++-+. --|+|.||.+||..-|......||.|..
T Consensus 274 ~LkCplc~~Llrnp~kT--~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLRNPMKT--PCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhhCcccC--ccccchHHHHHHhhhhhhccccCCCccc
Confidence 37799999988877332 2589999999999887656679999954
No 90
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.89 E-value=0.01 Score=52.13 Aligned_cols=43 Identities=30% Similarity=0.685 Sum_probs=33.8
Q ss_pred cccccccccccCCCceEeecCCCcccHhhHHHHhcCCCC-cccCCCCC
Q 039522 105 MECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHS-TCPLCRSI 151 (152)
Q Consensus 105 ~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~-~CP~Cr~~ 151 (152)
..|.||++ .+......|+|.||.+|+..-++..+. .||.||..
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~ 498 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNV 498 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHH
Confidence 68999999 334456699999999999998765433 59999864
No 91
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=94.70 E-value=0.013 Score=44.94 Aligned_cols=47 Identities=26% Similarity=0.553 Sum_probs=36.1
Q ss_pred cccccccccccc-cCCCceEee-c-CCCcccHhhHHHHhcCCCCccc--CCC
Q 039522 103 AAMECCVCLSRF-QSDEEVSEL-S-CKHFFHRGCLDKWFDNKHSTCP--LCR 149 (152)
Q Consensus 103 ~~~~C~ICl~~~-~~~~~~~~l-~-C~H~fh~~Ci~~wl~~~~~~CP--~Cr 149 (152)
.+..||||..+. -+++..... | |-|..|..|.++-|..+...|| -|-
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~ 60 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCG 60 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHH
Confidence 556799998864 444443333 5 9999999999999998888999 563
No 92
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=94.49 E-value=0.022 Score=44.67 Aligned_cols=44 Identities=27% Similarity=0.706 Sum_probs=35.5
Q ss_pred ccccccccccCCCce-EeecCCCcccHhhHHHHhcCCCCcccCCCC
Q 039522 106 ECCVCLSRFQSDEEV-SELSCKHFFHRGCLDKWFDNKHSTCPLCRS 150 (152)
Q Consensus 106 ~C~ICl~~~~~~~~~-~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~ 150 (152)
.|+||.+.+...... ..++|||.-|..|.......+ .+||+|.+
T Consensus 160 ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred CCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 399999987766543 345999999999999887655 79999976
No 93
>PHA02862 5L protein; Provisional
Probab=94.31 E-value=0.026 Score=40.00 Aligned_cols=25 Identities=28% Similarity=0.858 Sum_probs=20.2
Q ss_pred CcccHhhHHHHhcC-CCCcccCCCCC
Q 039522 127 HFFHRGCLDKWFDN-KHSTCPLCRSI 151 (152)
Q Consensus 127 H~fh~~Ci~~wl~~-~~~~CP~Cr~~ 151 (152)
...|++|+.+|+.. ++..|++|+.+
T Consensus 26 K~VHq~CL~~WIn~S~k~~CeLCkte 51 (156)
T PHA02862 26 KVVHIKCMQLWINYSKKKECNLCKTK 51 (156)
T ss_pred hhHHHHHHHHHHhcCCCcCccCCCCe
Confidence 35899999999965 34579999975
No 94
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=93.93 E-value=0.036 Score=45.13 Aligned_cols=29 Identities=31% Similarity=1.040 Sum_probs=22.2
Q ss_pred cCCCcccHhhHHHHhcCCC------------CcccCCCCCC
Q 039522 124 SCKHFFHRGCLDKWFDNKH------------STCPLCRSIL 152 (152)
Q Consensus 124 ~C~H~fh~~Ci~~wl~~~~------------~~CP~Cr~~~ 152 (152)
-|...+|.+|+.+||..++ ..||+||+++
T Consensus 310 ~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 310 YCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred cccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 3567789999999995432 3699999864
No 95
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=93.09 E-value=0.13 Score=30.47 Aligned_cols=34 Identities=26% Similarity=0.728 Sum_probs=26.9
Q ss_pred cccccccccccccCCCceEee-cCCCcccHhhHHH
Q 039522 103 AAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDK 136 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~ 136 (152)
....|++|-+.|..++.+++- .|+-.+|+.|..+
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 345799999999866655555 7999999999655
No 96
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.99 E-value=0.049 Score=48.64 Aligned_cols=36 Identities=25% Similarity=0.503 Sum_probs=28.2
Q ss_pred CcccccccccccccCCCceEeecCCCcccHhhHHHHh
Q 039522 102 SAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWF 138 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl 138 (152)
..+..|.+|...+.... ....+|||.||++|+.+-.
T Consensus 815 ep~d~C~~C~~~ll~~p-F~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKP-FYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcCc-ceeeeccchHHHHHHHHHH
Confidence 36678999999887653 2345999999999998764
No 97
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=92.91 E-value=0.041 Score=43.76 Aligned_cols=43 Identities=26% Similarity=0.464 Sum_probs=28.9
Q ss_pred ccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 104 AMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
.-.|--|-..+..- -+.++|.|+||.+|...- .-+.||.|-.+
T Consensus 90 VHfCd~Cd~PI~IY--GRmIPCkHvFCl~CAr~~---~dK~Cp~C~d~ 132 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIY--GRMIPCKHVFCLECARSD---SDKICPLCDDR 132 (389)
T ss_pred eEeecccCCcceee--ecccccchhhhhhhhhcC---ccccCcCcccH
Confidence 44577775554332 244599999999997652 23489999654
No 98
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.73 E-value=0.055 Score=42.69 Aligned_cols=28 Identities=32% Similarity=0.882 Sum_probs=22.1
Q ss_pred CCCcccHhhHHHHhcC------------CCCcccCCCCCC
Q 039522 125 CKHFFHRGCLDKWFDN------------KHSTCPLCRSIL 152 (152)
Q Consensus 125 C~H~fh~~Ci~~wl~~------------~~~~CP~Cr~~~ 152 (152)
|...+|.+|+.+|+.. ++.+||.||+++
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 6778899999999854 334799999864
No 99
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.66 E-value=0.0057 Score=49.80 Aligned_cols=49 Identities=27% Similarity=0.724 Sum_probs=39.1
Q ss_pred cccccccccccccCC-CceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSD-EEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~-~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
....|+||...+... +++..+-|||.+|..|+.+|+.. ...||.||..+
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~-~~kl~~~~rel 244 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT-KRKLPSCRREL 244 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH-HHHhHHHHhhh
Confidence 445799999988766 55566789999999999999975 45899998653
No 100
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.32 E-value=0.049 Score=47.21 Aligned_cols=42 Identities=26% Similarity=0.710 Sum_probs=31.9
Q ss_pred ccccccccccccCCC-ceEeecCCCcccHhhHHHHhcCCCCcccCCC
Q 039522 104 AMECCVCLSRFQSDE-EVSELSCKHFFHRGCLDKWFDNKHSTCPLCR 149 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~-~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr 149 (152)
..-|.||+..|.... ..+.+.|||..|+.|+..... .+|| |+
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp-~~ 53 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP-TK 53 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC-CC
Confidence 356999998886654 345569999999999998753 4788 54
No 101
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.64 E-value=0.11 Score=45.84 Aligned_cols=40 Identities=25% Similarity=0.693 Sum_probs=28.0
Q ss_pred ccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccC
Q 039522 106 ECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPL 147 (152)
Q Consensus 106 ~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~ 147 (152)
.|+||--.+... ......|+|+-|..|...|+..+. .||.
T Consensus 1030 ~C~~C~l~V~gs-s~~Cg~C~Hv~H~sc~~eWf~~gd-~Cps 1069 (1081)
T KOG0309|consen 1030 QCAICHLAVRGS-SNFCGTCGHVGHTSCMMEWFRTGD-VCPS 1069 (1081)
T ss_pred eeeeEeeEeecc-chhhccccccccHHHHHHHHhcCC-cCCC
Confidence 355655444332 223457999999999999998665 8885
No 102
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.45 E-value=0.087 Score=43.39 Aligned_cols=38 Identities=24% Similarity=0.572 Sum_probs=27.9
Q ss_pred cccccccccccccCC-CceEeecCCCcccHhhHHHHhcC
Q 039522 103 AAMECCVCLSRFQSD-EEVSELSCKHFFHRGCLDKWFDN 140 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~-~~~~~l~C~H~fh~~Ci~~wl~~ 140 (152)
...+|.||..+.... +......|+|.||.+|..+.++.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 456899999444333 34344589999999999988763
No 103
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=91.18 E-value=0.27 Score=28.50 Aligned_cols=44 Identities=23% Similarity=0.613 Sum_probs=20.0
Q ss_pred cccccccccccCCCceEeecCCCcccHhhHHHHhc----CCCCcccCCCCC
Q 039522 105 MECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFD----NKHSTCPLCRSI 151 (152)
Q Consensus 105 ~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~----~~~~~CP~Cr~~ 151 (152)
..|+|....+..+ ++...|.|.-+-+ +..|++ .+.-.||+|.++
T Consensus 3 L~CPls~~~i~~P--~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIP--VRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSE--EEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeC--ccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 4689888887776 4455899985433 344443 233469999875
No 104
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=91.11 E-value=0.15 Score=45.40 Aligned_cols=48 Identities=19% Similarity=0.322 Sum_probs=33.0
Q ss_pred cccccccccccccCCC---ceEee-cCCCcccHhhHHHHhcC-----CCCcccCCCC
Q 039522 103 AAMECCVCLSRFQSDE---EVSEL-SCKHFFHRGCLDKWFDN-----KHSTCPLCRS 150 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~---~~~~l-~C~H~fh~~Ci~~wl~~-----~~~~CP~Cr~ 150 (152)
...+|.+|..++..++ ....+ .|+|.||..||..|.+. .+-.|++|..
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~ 151 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEE 151 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHH
Confidence 4556888888887732 22222 59999999999999854 2235788754
No 105
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=90.76 E-value=0.35 Score=30.65 Aligned_cols=49 Identities=18% Similarity=0.400 Sum_probs=22.7
Q ss_pred cccccccccccccCC---CceEee-cCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 103 AAMECCVCLSRFQSD---EEVSEL-SCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~---~~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
....|.||-+.+... +..+.. .|+--.|+.|.+-=.+.++..||.|+++
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ 60 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTR 60 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCC
Confidence 445799999987433 222222 6888999999988777778899999875
No 106
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=90.62 E-value=0.066 Score=46.81 Aligned_cols=46 Identities=39% Similarity=0.873 Sum_probs=36.5
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCC--CCcccCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNK--HSTCPLCRSI 151 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~--~~~CP~Cr~~ 151 (152)
...+|+||...+..+ ..+.|.|.|+..|+..-|... ...||+|+..
T Consensus 20 k~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~ 67 (684)
T KOG4362|consen 20 KILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSD 67 (684)
T ss_pred hhccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhh
Confidence 446899999998887 556999999999998766543 3479999854
No 107
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=89.48 E-value=0.11 Score=48.31 Aligned_cols=45 Identities=27% Similarity=0.677 Sum_probs=35.8
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRS 150 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~ 150 (152)
....|.||++.+.+.. .+..|||.+|..|...|+. .+..||.|+.
T Consensus 1152 ~~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~-~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLY-ASSRCPICKS 1196 (1394)
T ss_pred cccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHH-HhccCcchhh
Confidence 3457999999988542 2347999999999999997 5558999964
No 108
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.37 E-value=0.58 Score=36.31 Aligned_cols=47 Identities=23% Similarity=0.415 Sum_probs=35.8
Q ss_pred CcccccccccccccCCCceEee-cCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
.....|+|---+|........+ +|||+|-...+.+. +...|++|.+.
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei---kas~C~~C~a~ 156 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI---KASVCHVCGAA 156 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh---hhccccccCCc
Confidence 3556799988887766555556 99999998887774 45689999875
No 109
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=88.98 E-value=0.3 Score=38.46 Aligned_cols=48 Identities=29% Similarity=0.769 Sum_probs=33.5
Q ss_pred ccccccccccccCCCc-eEeecCC-----CcccHhhHHHHhcC-CCCcccCCCCC
Q 039522 104 AMECCVCLSRFQSDEE-VSELSCK-----HFFHRGCLDKWFDN-KHSTCPLCRSI 151 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~-~~~l~C~-----H~fh~~Ci~~wl~~-~~~~CP~Cr~~ 151 (152)
...|-||..+...... ....+|. +..|+.|+..|+.. +...|.+|...
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~ 132 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSF 132 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccc
Confidence 4689999997654422 2334663 56799999999964 34479999763
No 110
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.17 E-value=0.2 Score=37.78 Aligned_cols=37 Identities=35% Similarity=0.801 Sum_probs=25.7
Q ss_pred cccccccccCCCceEeecCCC-cccHhhHHHHhcCCCCcccCCCCC
Q 039522 107 CCVCLSRFQSDEEVSELSCKH-FFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 107 C~ICl~~~~~~~~~~~l~C~H-~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
|-.|.+. ...+..+||.| .+|..|-.. + ..||+|+.+
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~-~----~~CPiC~~~ 198 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES-L----RICPICRSP 198 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc-C----ccCCCCcCh
Confidence 7777554 55566679976 567778654 2 379999875
No 111
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=87.15 E-value=0.28 Score=28.19 Aligned_cols=28 Identities=29% Similarity=0.848 Sum_probs=20.0
Q ss_pred cC-CCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 124 SC-KHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 124 ~C-~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
.| .|..|..|+...+.. ...||+|..++
T Consensus 17 ~C~dHYLCl~CLt~ml~~-s~~C~iC~~~L 45 (50)
T PF03854_consen 17 KCSDHYLCLNCLTLMLSR-SDRCPICGKPL 45 (50)
T ss_dssp E-SS-EEEHHHHHHT-SS-SSEETTTTEE-
T ss_pred eecchhHHHHHHHHHhcc-ccCCCcccCcC
Confidence 67 699999999999874 44899998764
No 112
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=86.40 E-value=0.22 Score=42.96 Aligned_cols=41 Identities=29% Similarity=0.779 Sum_probs=26.1
Q ss_pred ccccccccc-----cccCCCceEeecCCCcccHhhHHHHhcCCCCcccCC
Q 039522 104 AMECCVCLS-----RFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLC 148 (152)
Q Consensus 104 ~~~C~ICl~-----~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~C 148 (152)
...|.+|.. .|+.....+...|+++||+.|..+ +...||.|
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r----~s~~CPrC 556 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR----KSPCCPRC 556 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc----cCCCCCch
Confidence 345777732 233222333448999999999766 44459999
No 114
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=84.76 E-value=1 Score=36.12 Aligned_cols=50 Identities=20% Similarity=0.456 Sum_probs=32.5
Q ss_pred Ccccccccccccc---------------cCCCce-EeecCCCcccHhhHHHHhcC--------CCCcccCCCCC
Q 039522 102 SAAMECCVCLSRF---------------QSDEEV-SELSCKHFFHRGCLDKWFDN--------KHSTCPLCRSI 151 (152)
Q Consensus 102 ~~~~~C~ICl~~~---------------~~~~~~-~~l~C~H~fh~~Ci~~wl~~--------~~~~CP~Cr~~ 151 (152)
..+.+|++|+..= ..+-.. ...||||+--..-..-|-+. -+..||+|-+.
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~ 412 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQ 412 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhh
Confidence 3567899998741 111111 12389999888888889754 13469999764
No 115
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=83.21 E-value=0.66 Score=35.06 Aligned_cols=43 Identities=26% Similarity=0.736 Sum_probs=33.7
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLC 148 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~C 148 (152)
....|.+|..-.-.+ ++.-.|+-.+|..|+.+.++. ...||.|
T Consensus 180 nlk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~-~~~cphc 222 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQR-RDICPHC 222 (235)
T ss_pred HHHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcc-cCcCCch
Confidence 446799998876555 233378999999999999985 5689999
No 116
>PLN02189 cellulose synthase
Probab=83.12 E-value=1.2 Score=40.95 Aligned_cols=49 Identities=16% Similarity=0.384 Sum_probs=35.9
Q ss_pred cccccccccccccCC---CceEee-cCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 103 AAMECCVCLSRFQSD---EEVSEL-SCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~---~~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
....|.||-+++... +..+.. -|+--.|+.|.+-=.+.++..||.|++.
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~ 85 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTR 85 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCc
Confidence 345799999987533 222333 5888899999977666677799999875
No 117
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=82.74 E-value=1.2 Score=40.08 Aligned_cols=48 Identities=25% Similarity=0.700 Sum_probs=34.0
Q ss_pred cccccccccccccCCCceEeecCC-----CcccHhhHHHHhcC-CCCcccCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCK-----HFFHRGCLDKWFDN-KHSTCPLCRSI 151 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~-----H~fh~~Ci~~wl~~-~~~~CP~Cr~~ 151 (152)
+...|-||..+=..++... -||. ...|++|+.+|+.- +...|-+|..+
T Consensus 11 d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~ 64 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYE 64 (1175)
T ss_pred cchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecce
Confidence 4468999998865554432 2553 45899999999964 33479999865
No 118
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=81.74 E-value=1.5 Score=35.30 Aligned_cols=47 Identities=23% Similarity=0.440 Sum_probs=32.9
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRS 150 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~ 150 (152)
....|-.|.++.......+.-.|.+.||.+|-.--=. .-..||.|..
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHe-sLh~CpgCeh 375 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHE-SLHNCPGCEH 375 (378)
T ss_pred CCcceeeeccccCCCCcEEchhccceeeccchHHHHh-hhhcCCCcCC
Confidence 3445999977776666666558999999999544322 3337999964
No 119
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=81.45 E-value=1.4 Score=35.45 Aligned_cols=47 Identities=21% Similarity=0.390 Sum_probs=35.3
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCCC--CcccCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKH--STCPLCR 149 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~--~~CP~Cr 149 (152)
....||+=-+.-........+.|||++-++.++..-+++. ..||.|-
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 4467998666655555566779999999999999876543 4699993
No 120
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.33 E-value=0.83 Score=37.67 Aligned_cols=43 Identities=21% Similarity=0.442 Sum_probs=30.0
Q ss_pred ccccccccccccCCCceEee--cCCCcccHhhHHHHhcCCCCcccC
Q 039522 104 AMECCVCLSRFQSDEEVSEL--SCKHFFHRGCLDKWFDNKHSTCPL 147 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l--~C~H~fh~~Ci~~wl~~~~~~CP~ 147 (152)
-..|+.|.-.+........+ .|+|.||..|...|... +..|..
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~-~~~~~~ 350 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTH-NGECYE 350 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhC-CccccC
Confidence 45699998876555543332 58999999999999863 334533
No 121
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=81.12 E-value=0.91 Score=26.52 Aligned_cols=42 Identities=24% Similarity=0.518 Sum_probs=19.7
Q ss_pred cccccccccCCC-------ceEeecCCCcccHhhHHHHhcCCCCcccCCC
Q 039522 107 CCVCLSRFQSDE-------EVSELSCKHFFHRGCLDKWFDNKHSTCPLCR 149 (152)
Q Consensus 107 C~ICl~~~~~~~-------~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr 149 (152)
|--|+..|..+. ..+--.|++.|+.+|-.- +...-..||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~f-iHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVF-IHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHT-TTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChh-hhccccCCcCCC
Confidence 445666665542 111226999999999543 222333799984
No 122
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=80.62 E-value=2.8 Score=38.84 Aligned_cols=49 Identities=18% Similarity=0.453 Sum_probs=35.4
Q ss_pred cccccccccccccCC---CceEee-cCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 103 AAMECCVCLSRFQSD---EEVSEL-SCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~---~~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
....|-||-+++... +..+.. -|+--.|+.|.+-=.+.++..||.|++.
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktr 68 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTK 68 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCc
Confidence 345899999986443 222222 6888899999976555577799999875
No 123
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=80.31 E-value=0.89 Score=27.70 Aligned_cols=37 Identities=19% Similarity=0.430 Sum_probs=19.5
Q ss_pred CcccccccccccccCCCceEee-cCCCcccHhhHHHHh
Q 039522 102 SAAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWF 138 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl 138 (152)
.+...|.+|...|..-..-..- .||++|+..|.....
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 3567899999999665433333 799999999987554
No 124
>PLN02436 cellulose synthase A
Probab=80.03 E-value=1.8 Score=40.00 Aligned_cols=49 Identities=18% Similarity=0.466 Sum_probs=35.8
Q ss_pred cccccccccccccC---CCceEee-cCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 103 AAMECCVCLSRFQS---DEEVSEL-SCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 103 ~~~~C~ICl~~~~~---~~~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
....|.||-+++.. ++..+.. -|+--.|+.|.+-=.+.++..||.|++.
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~ 87 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCc
Confidence 34589999998633 3333333 5888899999977666677799999875
No 125
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=79.31 E-value=1 Score=33.73 Aligned_cols=39 Identities=41% Similarity=0.916 Sum_probs=26.3
Q ss_pred cccccccc-----cccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCC
Q 039522 105 MECCVCLS-----RFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCR 149 (152)
Q Consensus 105 ~~C~ICl~-----~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr 149 (152)
..|-+|-+ +|+.....+.-.|+.+||+.|..+ ..||-|.
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~------~~CpkC~ 196 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK------KSCPKCA 196 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC------CCCCCcH
Confidence 46777764 344433334448999999999652 4799994
No 126
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.19 E-value=2.6 Score=28.73 Aligned_cols=45 Identities=24% Similarity=0.438 Sum_probs=31.6
Q ss_pred cccccccccccCCC-----------ceEeecCCCcccHhhHHHHhcCCCCcccCCCC
Q 039522 105 MECCVCLSRFQSDE-----------EVSELSCKHFFHRGCLDKWFDNKHSTCPLCRS 150 (152)
Q Consensus 105 ~~C~ICl~~~~~~~-----------~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~ 150 (152)
..|--|+..|..+. ....-.|.+.||.+|-.-+-+.-+ .||.|..
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh-~CPGC~~ 111 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLH-CCPGCIH 111 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhcc-CCcCCCC
Confidence 45999998876431 122337999999999877765444 7999964
No 127
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.08 E-value=1.1 Score=38.54 Aligned_cols=43 Identities=28% Similarity=0.760 Sum_probs=32.8
Q ss_pred CCcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 101 CSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 101 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
......|.+|+... ..+..+|. |..|+.+|+.. +..||.|++.
T Consensus 476 ~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~-~~~~pl~~~~ 518 (543)
T KOG0802|consen 476 REPNDVCAICYQEM----SARITPCS---HALCLRKWLYV-QEVCPLCHTY 518 (543)
T ss_pred hcccCcchHHHHHH----Hhcccccc---chhHHHhhhhh-ccccCCCchh
Confidence 44667899999987 23445777 99999999974 4489999753
No 128
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=78.67 E-value=3.2 Score=38.40 Aligned_cols=49 Identities=18% Similarity=0.398 Sum_probs=35.8
Q ss_pred cccccccccccccCC---CceEee-cCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 103 AAMECCVCLSRFQSD---EEVSEL-SCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~---~~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
....|.||-+++... +..+.. -|+--.|+.|.+-=.+.++..||.|++.
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~ 66 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTR 66 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCc
Confidence 456799999986443 222222 6888899999976666677799999875
No 129
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.10 E-value=1.9 Score=34.15 Aligned_cols=36 Identities=22% Similarity=0.536 Sum_probs=28.4
Q ss_pred cccccccccccccCCCceEeecC----CCcccHhhHHHHhcCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSC----KHFFHRGCLDKWFDNK 141 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C----~H~fh~~Ci~~wl~~~ 141 (152)
.-..|.+|.+.++.. ...+| .|.||..|-.+-++.+
T Consensus 267 apLcCTLC~ERLEDT---HFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 267 APLCCTLCHERLEDT---HFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CceeehhhhhhhccC---ceeecCCCcccceecccCHHHHHhh
Confidence 447899999999876 33456 7999999999988653
No 130
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=78.04 E-value=1.8 Score=34.80 Aligned_cols=47 Identities=19% Similarity=0.403 Sum_probs=34.2
Q ss_pred ccccccccccccCCCceE-eecCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 104 AMECCVCLSRFQSDEEVS-ELSCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~-~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
...|+||-+.....+... -.+|++..|..|...-.. .+.+||.||.+
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~-~~~~~~~~rk~ 296 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD-GDGRCPGCRKP 296 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccc-cCCCCCccCCc
Confidence 367999999874444322 236888888888888765 56699999975
No 131
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=77.50 E-value=0.74 Score=37.93 Aligned_cols=50 Identities=24% Similarity=0.541 Sum_probs=0.0
Q ss_pred ccccccccccc-------------ccCCC---ceEeecCCCcccHhhHHHHhcCC--------CCcccCCCCCC
Q 039522 103 AAMECCVCLSR-------------FQSDE---EVSELSCKHFFHRGCLDKWFDNK--------HSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~-------------~~~~~---~~~~l~C~H~fh~~Ci~~wl~~~--------~~~CP~Cr~~~ 152 (152)
...+|++|+.. |..+. .....||||+--.+...-|-+.. +..||+|-.+|
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L 400 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPL 400 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcc
Confidence 46789999974 11111 11234999999999999996541 24699997654
No 132
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.36 E-value=1.4 Score=34.15 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=29.8
Q ss_pred CCCcccccccccccccCCCceEeecCCCcccHhhHHHHhc
Q 039522 100 SCSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFD 139 (152)
Q Consensus 100 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~ 139 (152)
...+-.-|..|+.++..+ ++.+=||+|+++||-+.+-
T Consensus 39 siK~FdcCsLtLqPc~dP---vit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDP---VITPDGYLFDREAILEYIL 75 (303)
T ss_pred ccCCcceeeeecccccCC---ccCCCCeeeeHHHHHHHHH
Confidence 334556799999999887 5567799999999988764
No 133
>PLN02195 cellulose synthase A
Probab=76.82 E-value=3.2 Score=38.12 Aligned_cols=49 Identities=18% Similarity=0.388 Sum_probs=35.4
Q ss_pred cccccccccccccCCC---ceEee-cCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 103 AAMECCVCLSRFQSDE---EVSEL-SCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~---~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
....|.||-+.+.... ..+.. -|+--.|+.|.+-=.+.++..||.|++.
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~ 57 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGP 57 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCc
Confidence 3457999999764432 22222 6888899999976565677799999875
No 134
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.66 E-value=1.5 Score=36.75 Aligned_cols=37 Identities=22% Similarity=0.690 Sum_probs=29.7
Q ss_pred CcccccccccccccCCCceEeecCCCcccHhhHHHHhcC
Q 039522 102 SAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDN 140 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~ 140 (152)
....+|-||.+.+.. ....+.|+|.|+..|....+..
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 356789999998765 4455699999999999988754
No 135
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=75.15 E-value=1.7 Score=26.70 Aligned_cols=12 Identities=50% Similarity=1.215 Sum_probs=8.7
Q ss_pred cccHhhHHHHhc
Q 039522 128 FFHRGCLDKWFD 139 (152)
Q Consensus 128 ~fh~~Ci~~wl~ 139 (152)
-||+.|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999985
No 136
>PLN02400 cellulose synthase
Probab=73.47 E-value=2.7 Score=38.96 Aligned_cols=49 Identities=16% Similarity=0.397 Sum_probs=34.7
Q ss_pred cccccccccccccCC---CceEee-cCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 103 AAMECCVCLSRFQSD---EEVSEL-SCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~---~~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
....|-||-+++... +..+.. -|+--.|+.|.+-=.+.++..||.|++.
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTr 87 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTR 87 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCc
Confidence 345799999987443 222222 6888899999865455567799999875
No 137
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=71.82 E-value=1.7 Score=24.61 Aligned_cols=44 Identities=25% Similarity=0.549 Sum_probs=27.1
Q ss_pred ccccccccccCCCceEeecCCCcccHhhHHHHhc-----CCCCcccCCC
Q 039522 106 ECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFD-----NKHSTCPLCR 149 (152)
Q Consensus 106 ~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~-----~~~~~CP~Cr 149 (152)
.|.||...-..+..+.--.|+..||..|+..-.. ...-.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 3888988433333332238999999999865332 1234687775
No 139
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=71.34 E-value=4.8 Score=20.82 Aligned_cols=36 Identities=25% Similarity=0.516 Sum_probs=22.3
Q ss_pred cccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 107 CCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 107 C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
|..|.+.+...+... ..=+..||..| ..|..|+.+|
T Consensus 2 C~~C~~~i~~~~~~~-~~~~~~~H~~C---------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVL-RALGKVWHPEC---------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEE-EeCCccccccC---------CCCcccCCcC
Confidence 777888776652222 23467888876 3677776653
No 140
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.22 E-value=1.5 Score=39.17 Aligned_cols=38 Identities=24% Similarity=0.497 Sum_probs=28.0
Q ss_pred CcccccccccccccCC----CceEeecCCCcccHhhHHHHhc
Q 039522 102 SAAMECCVCLSRFQSD----EEVSELSCKHFFHRGCLDKWFD 139 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~----~~~~~l~C~H~fh~~Ci~~wl~ 139 (152)
..+..|.-|.+..... +.+..+.|+|.||+.|+..-..
T Consensus 782 ~~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~ 823 (846)
T KOG2066|consen 782 SVEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESL 823 (846)
T ss_pred eehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHH
Confidence 3455799999876432 3556679999999999876543
No 141
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=67.71 E-value=5.1 Score=35.80 Aligned_cols=41 Identities=32% Similarity=0.505 Sum_probs=27.9
Q ss_pred cccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccC
Q 039522 105 MECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPL 147 (152)
Q Consensus 105 ~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~ 147 (152)
..|.+|...+..- .+-.-.|+|.=|.+|+.+|+. ++..||.
T Consensus 780 ~~CtVC~~vi~G~-~~~c~~C~H~gH~sh~~sw~~-~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRGV-DVWCQVCGHGGHDSHLKSWFF-KASPCAK 820 (839)
T ss_pred cCceeecceeeee-EeecccccccccHHHHHHHHh-cCCCCcc
Confidence 4688886654332 112226999999999999997 4446655
No 142
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=67.17 E-value=2.9 Score=22.36 Aligned_cols=25 Identities=32% Similarity=0.765 Sum_probs=15.3
Q ss_pred ccccccccccCCCc--------eEeecCCCccc
Q 039522 106 ECCVCLSRFQSDEE--------VSELSCKHFFH 130 (152)
Q Consensus 106 ~C~ICl~~~~~~~~--------~~~l~C~H~fh 130 (152)
+|+=|...|..++. +..-.|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 58888888766643 22235677663
No 143
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=66.56 E-value=1.7 Score=25.31 Aligned_cols=10 Identities=50% Similarity=1.155 Sum_probs=5.0
Q ss_pred CcccCCCCCC
Q 039522 143 STCPLCRSIL 152 (152)
Q Consensus 143 ~~CP~Cr~~~ 152 (152)
..||+|.++|
T Consensus 21 ~~CPlC~r~l 30 (54)
T PF04423_consen 21 GCCPLCGRPL 30 (54)
T ss_dssp EE-TTT--EE
T ss_pred CcCCCCCCCC
Confidence 3899998754
No 144
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=65.96 E-value=4.8 Score=23.25 Aligned_cols=35 Identities=17% Similarity=0.396 Sum_probs=25.4
Q ss_pred cccccccccccCCCceEee-cCCCcccHhhHHHHhc
Q 039522 105 MECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFD 139 (152)
Q Consensus 105 ~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~ 139 (152)
..|.+|-..|.....-..- .||++|+..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 4689998888765432223 7999999999877654
No 145
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=64.94 E-value=11 Score=25.34 Aligned_cols=46 Identities=26% Similarity=0.587 Sum_probs=28.5
Q ss_pred ccccccccccccCCCceEe------ecC---CCcccHhhHHHHhcC--------CCCcccCCCC
Q 039522 104 AMECCVCLSRFQSDEEVSE------LSC---KHFFHRGCLDKWFDN--------KHSTCPLCRS 150 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~------l~C---~H~fh~~Ci~~wl~~--------~~~~CP~Cr~ 150 (152)
...|..|...-... .+.. ..| .-.||..|+..++.. .+-.||.||.
T Consensus 7 g~~CHqCrqKt~~~-~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 7 GKTCHQCRQKTLDF-KTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCchhhcCCCCCC-ceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 34577776643321 1121 245 778999999888732 2346999985
No 146
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=64.60 E-value=2.5 Score=26.32 Aligned_cols=39 Identities=23% Similarity=0.567 Sum_probs=18.1
Q ss_pred cccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 105 MECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 105 ~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
..||.|..++.... ++.+|..|-.... ....||-|.++|
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~~~--~~a~CPdC~~~L 40 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKDYK--KEAFCPDCGQPL 40 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--EEE--EEEE-TTT-SB-
T ss_pred CcCCCCCCccEEeC-------CEEECccccccce--ecccCCCcccHH
Confidence 46888888765432 4455555544322 334788887764
No 147
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=64.28 E-value=4.4 Score=20.50 Aligned_cols=29 Identities=17% Similarity=0.328 Sum_probs=10.3
Q ss_pred ccccccccccCCCceEeecCCCcccHhhH
Q 039522 106 ECCVCLSRFQSDEEVSELSCKHFFHRGCL 134 (152)
Q Consensus 106 ~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci 134 (152)
.|.+|...........-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 47888887665333334478888999885
No 148
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=64.18 E-value=6.1 Score=30.99 Aligned_cols=47 Identities=21% Similarity=0.534 Sum_probs=33.4
Q ss_pred ccccccccccccCCCceEee----cCCCcccHhhHHHHhcC-C-------CCcccCCCC
Q 039522 104 AMECCVCLSRFQSDEEVSEL----SCKHFFHRGCLDKWFDN-K-------HSTCPLCRS 150 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l----~C~H~fh~~Ci~~wl~~-~-------~~~CP~Cr~ 150 (152)
..+|-+|.+++.+.+..+.. -|+-.+|..|+..-+.. . ...||.|++
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~ 240 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEK 240 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhc
Confidence 35899999999555544432 48899999999984322 1 236999986
No 149
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=61.15 E-value=7.5 Score=22.30 Aligned_cols=11 Identities=18% Similarity=0.625 Sum_probs=4.6
Q ss_pred ccccccccccC
Q 039522 106 ECCVCLSRFQS 116 (152)
Q Consensus 106 ~C~ICl~~~~~ 116 (152)
.|..|-..+..
T Consensus 28 ~C~~C~~~l~~ 38 (58)
T PF00412_consen 28 KCSKCGKPLND 38 (58)
T ss_dssp BETTTTCBTTT
T ss_pred ccCCCCCccCC
Confidence 34444444433
No 150
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.45 E-value=1.7 Score=34.12 Aligned_cols=48 Identities=21% Similarity=0.469 Sum_probs=35.8
Q ss_pred cccccccccccccCCC---ceEeec--------CCCcccHhhHHHHhcCCCCcccCCCC
Q 039522 103 AAMECCVCLSRFQSDE---EVSELS--------CKHFFHRGCLDKWFDNKHSTCPLCRS 150 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~---~~~~l~--------C~H~fh~~Ci~~wl~~~~~~CP~Cr~ 150 (152)
....|.||...+...+ ..+.+. |+|..+..|+..-+......||.||.
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~ 264 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTW 264 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccc
Confidence 3467999999988332 223345 99999999999987644468999975
No 151
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=58.09 E-value=9.3 Score=25.23 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=28.7
Q ss_pred ccccccccccccCCCceEeecCCCcccHhhHHHHhc
Q 039522 104 AMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFD 139 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~ 139 (152)
...|.||-..+..+++....+ .-..|.+|+..-..
T Consensus 6 ewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~~ 40 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESKR 40 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee-CCcchHHHHHHHHh
Confidence 457999999999998877777 66799999987553
No 152
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=56.19 E-value=3.7 Score=32.64 Aligned_cols=39 Identities=15% Similarity=0.480 Sum_probs=30.2
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNK 141 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~ 141 (152)
...+|.+|++++..+.......|..+||..|+-.|++..
T Consensus 213 ~~rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 213 PIRVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTG 251 (288)
T ss_pred CceecHHHHHHHhcccccchhhccccccccccccccccc
Confidence 444899999999875555555666699999999999753
No 153
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=56.02 E-value=3.4 Score=33.67 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=10.3
Q ss_pred cccccccccccccC
Q 039522 103 AAMECCVCLSRFQS 116 (152)
Q Consensus 103 ~~~~C~ICl~~~~~ 116 (152)
.+.-|++|-+....
T Consensus 14 l~ElCPVCGDkVSG 27 (475)
T KOG4218|consen 14 LGELCPVCGDKVSG 27 (475)
T ss_pred cccccccccCcccc
Confidence 55679999887643
No 154
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=54.67 E-value=1.4 Score=34.67 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=18.3
Q ss_pred CcccccccccccccC-----CC--ceEeecCCCcccHhhHHHHhcCCCCcccCCCC
Q 039522 102 SAAMECCVCLSRFQS-----DE--EVSELSCKHFFHRGCLDKWFDNKHSTCPLCRS 150 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~-----~~--~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~ 150 (152)
+....||||-..-.. +. .. .+.+|.-|-..|-- .+..||.|-.
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~-----R~L~Cs~C~t~W~~-~R~~Cp~Cg~ 219 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGK-----RYLHCSLCGTEWRF-VRIKCPYCGN 219 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------E-----EEEEETTT--EEE---TTS-TTT--
T ss_pred ccCCcCCCCCCcCceEEEecCCCCcc-----EEEEcCCCCCeeee-cCCCCcCCCC
Confidence 345689999886322 11 12 34566678888854 4558999953
No 155
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=53.33 E-value=6.4 Score=31.30 Aligned_cols=47 Identities=23% Similarity=0.323 Sum_probs=31.2
Q ss_pred ccccCCCCCCCCCcccccccccc-cccCCCceEee-cCCCcccHhhHHH
Q 039522 90 TVARSNGGSTSCSAAMECCVCLS-RFQSDEEVSEL-SCKHFFHRGCLDK 136 (152)
Q Consensus 90 ~~~~~~~~~~~~~~~~~C~ICl~-~~~~~~~~~~l-~C~H~fh~~Ci~~ 136 (152)
..........++.+...|.+|-. .|..-..--.. .||++||..|-..
T Consensus 154 ~~~~~~~~W~PD~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n 202 (288)
T KOG1729|consen 154 PSNNSAAVWLPDSEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRN 202 (288)
T ss_pred CCCCcCCcccCcccceecccCCCccccHHHHHHHHHhcchHhhhhhhcC
Confidence 33444455667778889999998 66443221122 6999999988655
No 156
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=51.91 E-value=9.6 Score=20.39 Aligned_cols=25 Identities=32% Similarity=0.753 Sum_probs=15.1
Q ss_pred ccccccccccCCCc--------eEeecCCCccc
Q 039522 106 ECCVCLSRFQSDEE--------VSELSCKHFFH 130 (152)
Q Consensus 106 ~C~ICl~~~~~~~~--------~~~l~C~H~fh 130 (152)
+|+-|...|..++. ++.-.|+|.|.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 58888887766642 22235666663
No 157
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=50.70 E-value=30 Score=20.58 Aligned_cols=43 Identities=23% Similarity=0.518 Sum_probs=27.3
Q ss_pred ccccccccccCCC-ceEeecCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 106 ECCVCLSRFQSDE-EVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 106 ~C~ICl~~~~~~~-~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
.|-.|-.++.... ...+-.=...||.+|.+..+. ..||.|-..
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~---~~CPNCgGe 50 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLN---GVCPNCGGE 50 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc---CcCcCCCCc
Confidence 4666767765554 222211134699999999873 389999654
No 158
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=50.05 E-value=15 Score=18.99 Aligned_cols=8 Identities=38% Similarity=1.215 Sum_probs=5.7
Q ss_pred CcccCCCC
Q 039522 143 STCPLCRS 150 (152)
Q Consensus 143 ~~CP~Cr~ 150 (152)
..||+|.+
T Consensus 18 ~~CP~Cg~ 25 (33)
T cd00350 18 WVCPVCGA 25 (33)
T ss_pred CcCcCCCC
Confidence 37888865
No 159
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=50.04 E-value=2.2 Score=24.85 Aligned_cols=12 Identities=25% Similarity=0.622 Sum_probs=8.4
Q ss_pred cccccccccccC
Q 039522 105 MECCVCLSRFQS 116 (152)
Q Consensus 105 ~~C~ICl~~~~~ 116 (152)
..||.|-+.+..
T Consensus 3 f~CP~C~~~~~~ 14 (54)
T PF05605_consen 3 FTCPYCGKGFSE 14 (54)
T ss_pred cCCCCCCCccCH
Confidence 568888886544
No 160
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=48.52 E-value=9.3 Score=25.98 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=22.5
Q ss_pred cccccccccccccCC--CceEeecCCCcccHhhHHH
Q 039522 103 AAMECCVCLSRFQSD--EEVSELSCKHFFHRGCLDK 136 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~--~~~~~l~C~H~fh~~Ci~~ 136 (152)
....|.+|...|..- .......|.|.+|..|-..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~ 88 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY 88 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc
Confidence 556899999876432 3444458999999999654
No 161
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=47.91 E-value=11 Score=18.73 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=11.9
Q ss_pred ccccccccccCCCceEee-cCCCcc
Q 039522 106 ECCVCLSRFQSDEEVSEL-SCKHFF 129 (152)
Q Consensus 106 ~C~ICl~~~~~~~~~~~l-~C~H~f 129 (152)
.||-|...+....+ .- .|||.|
T Consensus 2 ~CP~C~~~V~~~~~--~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAK--FCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcC--cCCCCCCCC
Confidence 47777666544321 12 377766
No 162
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.67 E-value=8.8 Score=25.17 Aligned_cols=12 Identities=42% Similarity=1.149 Sum_probs=10.6
Q ss_pred cccHhhHHHHhc
Q 039522 128 FFHRGCLDKWFD 139 (152)
Q Consensus 128 ~fh~~Ci~~wl~ 139 (152)
-||+.|+..|+.
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 163
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=46.97 E-value=8.5 Score=33.10 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=25.1
Q ss_pred CCCCCcccccccccccccCCCceEe-ecCCCcccHhhHH
Q 039522 98 STSCSAAMECCVCLSRFQSDEEVSE-LSCKHFFHRGCLD 135 (152)
Q Consensus 98 ~~~~~~~~~C~ICl~~~~~~~~~~~-l~C~H~fh~~Ci~ 135 (152)
..+......|..|..+|..-..-.. -+||-+||..|-.
T Consensus 895 wipd~~a~~cmacq~pf~afrrrhhcrncggifcg~cs~ 933 (990)
T KOG1819|consen 895 WIPDEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSC 933 (990)
T ss_pred cCCCCcchhhhhccCcHHHHHHhhhhcccCceeeccccc
Confidence 3445566778888888754432122 2799999999854
No 164
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=45.69 E-value=14 Score=24.47 Aligned_cols=33 Identities=21% Similarity=0.492 Sum_probs=22.4
Q ss_pred cccccccccccccCCCceEee--cCCCcccHhhHHHH
Q 039522 103 AAMECCVCLSRFQSDEEVSEL--SCKHFFHRGCLDKW 137 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l--~C~H~fh~~Ci~~w 137 (152)
....|.||... .+..+..- .|...||..|....
T Consensus 54 ~~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 54 FKLKCSICGKS--GGACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred cCCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHHC
Confidence 34679999887 33222222 38889999998764
No 165
>PF12773 DZR: Double zinc ribbon
Probab=44.84 E-value=17 Score=20.34 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=7.9
Q ss_pred ccccccccccccc
Q 039522 103 AAMECCVCLSRFQ 115 (152)
Q Consensus 103 ~~~~C~ICl~~~~ 115 (152)
....|+-|-..+.
T Consensus 11 ~~~fC~~CG~~l~ 23 (50)
T PF12773_consen 11 DAKFCPHCGTPLP 23 (50)
T ss_pred cccCChhhcCChh
Confidence 4456666666655
No 166
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=43.48 E-value=15 Score=29.44 Aligned_cols=42 Identities=24% Similarity=0.394 Sum_probs=25.9
Q ss_pred cccccccccccccC-------CCceEeecCCCcccHhhHHHHhcCCCCcccCCCC
Q 039522 103 AAMECCVCLSRFQS-------DEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRS 150 (152)
Q Consensus 103 ~~~~C~ICl~~~~~-------~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~ 150 (152)
....||||-..-.. .+..+.+ +|.-|-..|-- .+..||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL-----~CslC~teW~~-~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYL-----HCNLCESEWHV-VRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEE-----EcCCCCCcccc-cCccCCCCCC
Confidence 45789999886321 1233434 45567777754 4558999954
No 167
>PF14353 CpXC: CpXC protein
Probab=42.74 E-value=26 Score=23.93 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=23.6
Q ss_pred cccccccccccCCCceEeecCCCcccHhhHHHHhcC--CCCcccCCCCC
Q 039522 105 MECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDN--KHSTCPLCRSI 151 (152)
Q Consensus 105 ~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~--~~~~CP~Cr~~ 151 (152)
.+||-|...+...-. ..-.-.-..+=..+-+.+ ...+||.|...
T Consensus 2 itCP~C~~~~~~~v~---~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~ 47 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVW---TSINADEDPELKEKILDGSLFSFTCPSCGHK 47 (128)
T ss_pred cCCCCCCCeeEEEEE---eEEcCcCCHHHHHHHHcCCcCEEECCCCCCc
Confidence 368888888765421 122333344444454432 12479999753
No 168
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=42.17 E-value=29 Score=22.56 Aligned_cols=37 Identities=11% Similarity=0.275 Sum_probs=25.9
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
+...|+-|...+.--+.+. +-.|+- .+..|..|+++|
T Consensus 32 ~rS~C~~C~~~L~~~~lIP------------i~S~l~-lrGrCr~C~~~I 68 (92)
T PF06750_consen 32 PRSHCPHCGHPLSWWDLIP------------ILSYLL-LRGRCRYCGAPI 68 (92)
T ss_pred CCCcCcCCCCcCcccccch------------HHHHHH-hCCCCcccCCCC
Confidence 3456999988876655544 567776 344899999875
No 169
>PF15069 FAM163: FAM163 family
Probab=42.07 E-value=81 Score=22.43 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=26.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 039522 11 EGLLPGLVMNTVLSVALLKNMVRSLLQGMGAA 42 (152)
Q Consensus 11 ~~~lp~l~l~~~~~~~~l~~~~~~~~~~~g~~ 42 (152)
..|+..-+|.+++++.+|..+....+++.==+
T Consensus 5 TvVItGgILAtVILLcIIaVLCYCRLQYYCCK 36 (143)
T PF15069_consen 5 TVVITGGILATVILLCIIAVLCYCRLQYYCCK 36 (143)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 35777889999999999999999999985333
No 170
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=41.44 E-value=64 Score=29.38 Aligned_cols=50 Identities=32% Similarity=0.681 Sum_probs=29.5
Q ss_pred CCCCCCccccccccccccc----CCC----ceEee--cCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 97 GSTSCSAAMECCVCLSRFQ----SDE----EVSEL--SCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 97 ~~~~~~~~~~C~ICl~~~~----~~~----~~~~l--~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
+..-...+..|+-|...|- .+. ....+ .|.|..|..=|. +...||+|...
T Consensus 1124 g~~i~~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs-----~y~~CPLCHs~ 1183 (1189)
T KOG2041|consen 1124 GAKIDPYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEIS-----KYNCCPLCHSM 1183 (1189)
T ss_pred CCcCCccCCCChhhcCcCceeeccCCccccceEEEcccccccccccccc-----ccccCccccCh
Confidence 3334456677888877651 111 12223 588888765543 34589999764
No 171
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=41.35 E-value=14 Score=23.36 Aligned_cols=33 Identities=24% Similarity=0.520 Sum_probs=21.3
Q ss_pred ccccccccccccCCCceEeecCCCcccHhhHHH
Q 039522 104 AMECCVCLSRFQSDEEVSELSCKHFFHRGCLDK 136 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~ 136 (152)
...|.+|.......-....-.|...||..|...
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 357999987622211111226999999999865
No 172
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=40.90 E-value=25 Score=23.54 Aligned_cols=32 Identities=13% Similarity=0.217 Sum_probs=25.7
Q ss_pred ccccccccccCCCceEeecCCCcccHhhHHHHh
Q 039522 106 ECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWF 138 (152)
Q Consensus 106 ~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl 138 (152)
.|.||-+++..++....++= -..|..|+..-.
T Consensus 4 kC~iCg~~I~~gqlFTF~~k-G~VH~~C~~~~~ 35 (101)
T PF09943_consen 4 KCYICGKPIYEGQLFTFTKK-GPVHYECFREKA 35 (101)
T ss_pred EEEecCCeeeecceEEEecC-CcEeHHHHHHHH
Confidence 69999999999887666633 679999998754
No 173
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.40 E-value=8.3 Score=32.37 Aligned_cols=37 Identities=32% Similarity=0.507 Sum_probs=27.4
Q ss_pred ccccccccccccCCCceE---ee--cCCCcccHhhHHHHhcC
Q 039522 104 AMECCVCLSRFQSDEEVS---EL--SCKHFFHRGCLDKWFDN 140 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~---~l--~C~H~fh~~Ci~~wl~~ 140 (152)
...||.|...++...... .. +|.|.||+.|+..|-..
T Consensus 226 tk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 226 TKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred CccCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 345999999887765322 12 49999999999998764
No 174
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.30 E-value=9.4 Score=30.52 Aligned_cols=48 Identities=23% Similarity=0.519 Sum_probs=36.4
Q ss_pred CCcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 101 CSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 101 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
.+....|-||...+..+... -.|.|.|+..|...|...++ -||.||..
T Consensus 102 ~~~~~~~~~~~g~l~vpt~~--qg~w~qf~~~~p~~~~~~~~-~~~d~~~~ 149 (324)
T KOG0824|consen 102 QQDHDICYICYGKLTVPTRI--QGCWHQFCYVCPKSNFAMGN-DCPDCRGK 149 (324)
T ss_pred cCCccceeeeeeeEEecccc--cCceeeeeecCCchhhhhhh-ccchhhcC
Confidence 34556799999988876332 25999999999999997555 78888753
No 175
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=39.77 E-value=11 Score=36.32 Aligned_cols=48 Identities=27% Similarity=0.466 Sum_probs=37.9
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCC---CCcccCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNK---HSTCPLCRS 150 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~---~~~CP~Cr~ 150 (152)
....|.+|.........+....|...||..|+..-+... .=.||-||.
T Consensus 1107 ~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~ 1157 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRK 1157 (1404)
T ss_pred chhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccch
Confidence 556799999998776666556899999999999987542 236999985
No 176
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=39.62 E-value=16 Score=28.47 Aligned_cols=42 Identities=14% Similarity=0.319 Sum_probs=31.0
Q ss_pred ccccccccccccCCCceEeecCCCcccHhhHHHHhcCC-CCcccC
Q 039522 104 AMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNK-HSTCPL 147 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~-~~~CP~ 147 (152)
...|||=...+.++ ++.-.|||+|-++-|...+... ...||+
T Consensus 176 s~rdPis~~~I~nP--viSkkC~HvydrDsI~~~l~~~~~i~CPv 218 (262)
T KOG2979|consen 176 SNRDPISKKPIVNP--VISKKCGHVYDRDSIMQILCDEITIRCPV 218 (262)
T ss_pred cccCchhhhhhhch--hhhcCcCcchhhhhHHHHhccCceeeccc
Confidence 35699887777766 3334899999999999988631 335887
No 177
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=37.75 E-value=20 Score=23.46 Aligned_cols=35 Identities=17% Similarity=0.575 Sum_probs=24.9
Q ss_pred ccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 104 AMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
...|-||-..+... +|.||..|..+ ...|.+|-..
T Consensus 44 ~~~C~~CK~~v~q~--------g~~YCq~CAYk-----kGiCamCGKk 78 (90)
T PF10235_consen 44 SSKCKICKTKVHQP--------GAKYCQTCAYK-----KGICAMCGKK 78 (90)
T ss_pred CccccccccccccC--------CCccChhhhcc-----cCcccccCCe
Confidence 45799997775543 67899999643 4489999654
No 178
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=37.68 E-value=17 Score=17.91 Aligned_cols=7 Identities=43% Similarity=1.379 Sum_probs=3.9
Q ss_pred cccCCCC
Q 039522 144 TCPLCRS 150 (152)
Q Consensus 144 ~CP~Cr~ 150 (152)
.||+|.+
T Consensus 3 ~CPiC~~ 9 (26)
T smart00734 3 QCPVCFR 9 (26)
T ss_pred cCCCCcC
Confidence 4666643
No 179
>PF14383 VARLMGL: DUF761-associated sequence motif
Probab=37.12 E-value=15 Score=19.49 Aligned_cols=9 Identities=44% Similarity=1.017 Sum_probs=7.5
Q ss_pred CCCCCCCCC
Q 039522 1 MGLSNFPSA 9 (152)
Q Consensus 1 mg~~~~p~~ 9 (152)
|||.++|..
T Consensus 22 MGld~lP~~ 30 (34)
T PF14383_consen 22 MGLDSLPDS 30 (34)
T ss_pred hccccCCcc
Confidence 899999863
No 180
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=36.81 E-value=23 Score=20.48 Aligned_cols=23 Identities=26% Similarity=0.706 Sum_probs=12.3
Q ss_pred cCCCcccHhhHHHHhcCCCCcccCC
Q 039522 124 SCKHFFHRGCLDKWFDNKHSTCPLC 148 (152)
Q Consensus 124 ~C~H~fh~~Ci~~wl~~~~~~CP~C 148 (152)
.|+|.|-..=-.+- .....||.|
T Consensus 33 ~Cgh~w~~~v~~R~--~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKASVNDRT--RRGKGCPYC 55 (55)
T ss_pred CCCCeeEccHhhhc--cCCCCCCCC
Confidence 35666654322222 244579988
No 181
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=35.85 E-value=6.7 Score=18.79 Aligned_cols=8 Identities=38% Similarity=0.970 Sum_probs=4.1
Q ss_pred cccCCCCC
Q 039522 144 TCPLCRSI 151 (152)
Q Consensus 144 ~CP~Cr~~ 151 (152)
.||.|-++
T Consensus 15 fC~~CG~~ 22 (23)
T PF13240_consen 15 FCPNCGTP 22 (23)
T ss_pred chhhhCCc
Confidence 45555444
No 182
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=34.73 E-value=27 Score=19.67 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=23.0
Q ss_pred cccccccccccc--cCCCceEeecCCCcccHhhHHH
Q 039522 103 AAMECCVCLSRF--QSDEEVSELSCKHFFHRGCLDK 136 (152)
Q Consensus 103 ~~~~C~ICl~~~--~~~~~~~~l~C~H~fh~~Ci~~ 136 (152)
....|.+|.+.+ .......-..|+-..|..|+..
T Consensus 10 ~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 10 KPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp STEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCT
T ss_pred CCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhh
Confidence 445799999988 3334444458999999999765
No 183
>PRK01343 zinc-binding protein; Provisional
Probab=32.36 E-value=25 Score=20.95 Aligned_cols=9 Identities=33% Similarity=0.896 Sum_probs=5.3
Q ss_pred CcccCCCCC
Q 039522 143 STCPLCRSI 151 (152)
Q Consensus 143 ~~CP~Cr~~ 151 (152)
..||+|+++
T Consensus 10 ~~CP~C~k~ 18 (57)
T PRK01343 10 RPCPECGKP 18 (57)
T ss_pred CcCCCCCCc
Confidence 356666654
No 184
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=32.16 E-value=11 Score=20.77 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=13.1
Q ss_pred cCCCcccHhhHHHHhcCCCCcccCCCC
Q 039522 124 SCKHFFHRGCLDKWFDNKHSTCPLCRS 150 (152)
Q Consensus 124 ~C~H~fh~~Ci~~wl~~~~~~CP~Cr~ 150 (152)
.|||.|-...-.. +.....||.|..
T Consensus 10 ~Cg~~fe~~~~~~--~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSIS--EDDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcC--CCCCCcCCCCCC
Confidence 5676665422111 113347999976
No 185
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=31.38 E-value=14 Score=21.56 Aligned_cols=14 Identities=29% Similarity=0.695 Sum_probs=12.6
Q ss_pred cCCCcccHhhHHHH
Q 039522 124 SCKHFFHRGCLDKW 137 (152)
Q Consensus 124 ~C~H~fh~~Ci~~w 137 (152)
.|++.||..|...|
T Consensus 45 ~C~~~fC~~C~~~~ 58 (64)
T smart00647 45 KCGFSFCFRCKVPW 58 (64)
T ss_pred CCCCeECCCCCCcC
Confidence 68999999998887
No 186
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.37 E-value=13 Score=26.25 Aligned_cols=49 Identities=20% Similarity=0.432 Sum_probs=24.1
Q ss_pred Cccccccccccc-ccCCCceEeecCCCcccHhhHHHHhcCCCC---cccCCCC
Q 039522 102 SAAMECCVCLSR-FQSDEEVSELSCKHFFHRGCLDKWFDNKHS---TCPLCRS 150 (152)
Q Consensus 102 ~~~~~C~ICl~~-~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~---~CP~Cr~ 150 (152)
..+.+|-||+.. |..+-.-...-|.-.||..|--+--...+. .|-+|+.
T Consensus 63 ~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k 115 (169)
T KOG3799|consen 63 GDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRK 115 (169)
T ss_pred CcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcH
Confidence 366789999875 444411111234445555554332211121 4666654
No 187
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=30.65 E-value=20 Score=28.74 Aligned_cols=42 Identities=19% Similarity=0.381 Sum_probs=25.6
Q ss_pred ccccccccccccc-----C---CCceEeecCCCcccHhhHHHHhcCCCCcccCCCC
Q 039522 103 AAMECCVCLSRFQ-----S---DEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRS 150 (152)
Q Consensus 103 ~~~~C~ICl~~~~-----~---~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~ 150 (152)
....||||-..-. . .+..+.+ +|.-|-..|-- .+..||.|-.
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL-----~CslC~teW~~-~R~~C~~Cg~ 232 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYL-----SCSLCATEWHY-VRVKCSHCEE 232 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEE-----EcCCCCCcccc-cCccCCCCCC
Confidence 4458999988632 1 1233444 45557777754 4558999954
No 188
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=29.86 E-value=27 Score=24.60 Aligned_cols=19 Identities=26% Similarity=0.728 Sum_probs=13.4
Q ss_pred cCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 124 SCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 124 ~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
.|||+|+. .+..||.|..+
T Consensus 34 ~CG~v~~P---------Pr~~Cp~C~~~ 52 (140)
T COG1545 34 KCGRVYFP---------PRAYCPKCGSE 52 (140)
T ss_pred CCCeEEcC---------CcccCCCCCCC
Confidence 68888865 44578888764
No 189
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=29.62 E-value=29 Score=30.72 Aligned_cols=27 Identities=30% Similarity=0.855 Sum_probs=20.7
Q ss_pred cCCCcccHhhHHHHhcCC----CCcccCCCC
Q 039522 124 SCKHFFHRGCLDKWFDNK----HSTCPLCRS 150 (152)
Q Consensus 124 ~C~H~fh~~Ci~~wl~~~----~~~CP~Cr~ 150 (152)
.|+-.+|..|+..|++.. .-.||-||.
T Consensus 40 ~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv 70 (694)
T KOG4443|consen 40 DCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV 70 (694)
T ss_pred hhcccCCcchhhHHHhHHHhcCCcccCCcee
Confidence 689999999999998542 225888763
No 190
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=28.99 E-value=1e+02 Score=23.11 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=14.9
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHH
Q 039522 6 FPSAAEGLLPGLVMNTVLSVALLKNMV 32 (152)
Q Consensus 6 ~p~~~~~~lp~l~l~~~~~~~~l~~~~ 32 (152)
||.+....+|..++..++.+.+|..++
T Consensus 44 ~p~~~~~~~~~~l~w~~I~FliL~~lL 70 (204)
T PRK09174 44 FPPFDSTHYASQLLWLAITFGLFYLFM 70 (204)
T ss_pred CCCCcchhccHHHHHHHHHHHHHHHHH
Confidence 777666666655555555444444433
No 191
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.45 E-value=72 Score=20.04 Aligned_cols=23 Identities=22% Similarity=0.593 Sum_probs=17.9
Q ss_pred CCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 126 KHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 126 ~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
.+.||.+|.+.-|. ..||.|-..
T Consensus 28 EcTFCadCae~~l~---g~CPnCGGe 50 (84)
T COG3813 28 ECTFCADCAENRLH---GLCPNCGGE 50 (84)
T ss_pred eeehhHhHHHHhhc---CcCCCCCch
Confidence 57799999998764 489999653
No 192
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=28.19 E-value=29 Score=30.27 Aligned_cols=35 Identities=26% Similarity=0.570 Sum_probs=23.6
Q ss_pred cccccccccccccCC----C------ceEeecCCCcccHhhHHHH
Q 039522 103 AAMECCVCLSRFQSD----E------EVSELSCKHFFHRGCLDKW 137 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~----~------~~~~l~C~H~fh~~Ci~~w 137 (152)
....|+||.+.|+.- + ..+.+.=|-+||..|+..-
T Consensus 512 ~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 512 RQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEK 556 (579)
T ss_pred cccCCcccccccceeecchhhheeecceeeeccCceeeccccchH
Confidence 456799999988543 1 1122335889999998764
No 193
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=27.74 E-value=16 Score=21.36 Aligned_cols=7 Identities=57% Similarity=1.711 Sum_probs=2.3
Q ss_pred cccCCCC
Q 039522 144 TCPLCRS 150 (152)
Q Consensus 144 ~CP~Cr~ 150 (152)
+||+|.+
T Consensus 26 tCP~C~a 32 (54)
T PF09237_consen 26 TCPICGA 32 (54)
T ss_dssp E-TTT--
T ss_pred CCCcchh
Confidence 4555543
No 194
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=27.61 E-value=26 Score=25.38 Aligned_cols=9 Identities=56% Similarity=1.457 Sum_probs=6.2
Q ss_pred cccCCCCCC
Q 039522 144 TCPLCRSIL 152 (152)
Q Consensus 144 ~CP~Cr~~~ 152 (152)
.||+||..|
T Consensus 82 ~CPLCRG~V 90 (162)
T PF07800_consen 82 ACPLCRGEV 90 (162)
T ss_pred cCccccCce
Confidence 578887654
No 195
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=27.33 E-value=45 Score=17.98 Aligned_cols=33 Identities=27% Similarity=0.572 Sum_probs=23.4
Q ss_pred ccccccccccccCCC-ceEeecCCCcccHhhHHH
Q 039522 104 AMECCVCLSRFQSDE-EVSELSCKHFFHRGCLDK 136 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~-~~~~l~C~H~fh~~Ci~~ 136 (152)
...|.+|.+.+.... ......|+-..|..|..+
T Consensus 11 ~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~ 44 (49)
T smart00109 11 PTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEK 44 (49)
T ss_pred CCCccccccccCcCCCCcCCCCCCchHHHHHHhh
Confidence 346999998876532 233336889999999876
No 196
>KOG4021 consensus Mitochondrial ribosomal protein S18b [Translation, ribosomal structure and biogenesis]
Probab=26.17 E-value=36 Score=25.58 Aligned_cols=21 Identities=29% Similarity=0.635 Sum_probs=11.9
Q ss_pred HhhHHHHhcCCCCcccCCCCC
Q 039522 131 RGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 131 ~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
+.||.+--..-..-||+||..
T Consensus 97 ktCIrkn~~~~gnpCPICRDe 117 (239)
T KOG4021|consen 97 KTCIRKNGRFLGNPCPICRDE 117 (239)
T ss_pred hHHHhhcCeecCCCCCccccc
Confidence 356665322122379999964
No 197
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=25.65 E-value=1.4e+02 Score=21.50 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=13.8
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHH
Q 039522 6 FPSAAEGLLPGLVMNTVLSVALLKNM 31 (152)
Q Consensus 6 ~p~~~~~~lp~l~l~~~~~~~~l~~~ 31 (152)
||.+....++..++..++.+.++..+
T Consensus 1 mPQfd~~~~~sqifw~iI~FlILy~l 26 (155)
T PRK06569 1 MPQFDIATYYSQIFWLIVTFGLLYIF 26 (155)
T ss_pred CCCCchhhhhHHHHHHHHHHHHHHHH
Confidence 56655555665555555555444333
No 198
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=25.58 E-value=1.2e+02 Score=22.11 Aligned_cols=25 Identities=8% Similarity=0.224 Sum_probs=14.2
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHH
Q 039522 3 LSNFPSAAEGLLPGLVMNTVLSVAL 27 (152)
Q Consensus 3 ~~~~p~~~~~~lp~l~l~~~~~~~~ 27 (152)
-.-||.+....+|..++..++.+.+
T Consensus 19 ~~gmp~ld~~t~~~q~~~~lI~F~i 43 (181)
T PRK13454 19 APGMPQLDFSTFPNQIFWLLVTLVA 43 (181)
T ss_pred CCCCCCCcHHhcchHHHHHHHHHHH
Confidence 3457777776666555554444443
No 199
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.36 E-value=34 Score=30.19 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=27.8
Q ss_pred CCCcc-cccccccccccCCCceE-eecCCCcccHhhHHHHhc
Q 039522 100 SCSAA-MECCVCLSRFQSDEEVS-ELSCKHFFHRGCLDKWFD 139 (152)
Q Consensus 100 ~~~~~-~~C~ICl~~~~~~~~~~-~l~C~H~fh~~Ci~~wl~ 139 (152)
.++.+ .+|-.|...|..-..-. .-.||-+||..|-.+-+.
T Consensus 160 pdW~D~~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~ 201 (634)
T KOG1818|consen 160 PDWIDSEECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLT 201 (634)
T ss_pred cccccccccceeeeeeeeccccccccccchhhccCccccccC
Confidence 33444 78999999986654222 237999999999776543
No 200
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=24.78 E-value=36 Score=18.62 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=22.9
Q ss_pred ccccccccccccCC--CceEeecCCCcccHhhHHH
Q 039522 104 AMECCVCLSRFQSD--EEVSELSCKHFFHRGCLDK 136 (152)
Q Consensus 104 ~~~C~ICl~~~~~~--~~~~~l~C~H~fh~~Ci~~ 136 (152)
...|.+|.+.+... .......|+-..|..|..+
T Consensus 11 ~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~ 45 (50)
T cd00029 11 PTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADK 45 (50)
T ss_pred CCChhhcchhhhccccceeEcCCCCCchhhhhhcc
Confidence 34699998887642 2333336899999999765
No 201
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=23.76 E-value=7.3 Score=22.76 Aligned_cols=32 Identities=22% Similarity=0.464 Sum_probs=16.6
Q ss_pred cccc--ccccccCCCce----Eeec-CCCcccHhhHHHH
Q 039522 106 ECCV--CLSRFQSDEEV----SELS-CKHFFHRGCLDKW 137 (152)
Q Consensus 106 ~C~I--Cl~~~~~~~~~----~~l~-C~H~fh~~Ci~~w 137 (152)
.|+- |-..+...+.. +.-+ |++.||..|-..|
T Consensus 20 ~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 20 WCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp --TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred CCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 5766 76665444321 2224 8999999998777
No 202
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=23.52 E-value=39 Score=16.99 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=15.8
Q ss_pred ccccccccccCCCceEeecCCCcccHhh
Q 039522 106 ECCVCLSRFQSDEEVSELSCKHFFHRGC 133 (152)
Q Consensus 106 ~C~ICl~~~~~~~~~~~l~C~H~fh~~C 133 (152)
.|.+|.++........-..|.-.+|..|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCCCeEcCcc
Confidence 4788877655432222235666777666
No 203
>PF11682 DUF3279: Protein of unknown function (DUF3279); InterPro: IPR021696 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=22.45 E-value=55 Score=22.83 Aligned_cols=18 Identities=28% Similarity=0.800 Sum_probs=12.3
Q ss_pred cCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 124 SCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 124 ~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
-|++.|| +.+.||.|+.-
T Consensus 102 ~C~~~Y~----------GeK~C~~C~tG 119 (128)
T PF11682_consen 102 MCGNHYH----------GEKYCPKCGTG 119 (128)
T ss_pred cCCCccC----------cCEecCCCCCc
Confidence 4777776 34578888763
No 204
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=21.75 E-value=95 Score=18.47 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=21.2
Q ss_pred cccccccccccccC--CCceEee-cCCCcccHhhHHH
Q 039522 103 AAMECCVCLSRFQS--DEEVSEL-SCKHFFHRGCLDK 136 (152)
Q Consensus 103 ~~~~C~ICl~~~~~--~~~~~~l-~C~H~fh~~Ci~~ 136 (152)
....|+.|-..... ....... .||+.+|.+-...
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~naA 63 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNAA 63 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCEECcHHHHH
Confidence 34569999887766 2222233 4888888775443
No 205
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=21.65 E-value=64 Score=29.67 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=23.9
Q ss_pred cccccccccccCCCc---eE--ee-cCCCcccHhhHHHHh
Q 039522 105 MECCVCLSRFQSDEE---VS--EL-SCKHFFHRGCLDKWF 138 (152)
Q Consensus 105 ~~C~ICl~~~~~~~~---~~--~l-~C~H~fh~~Ci~~wl 138 (152)
..|..|...|..-.+ .+ .. .||.+||..|-....
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs 500 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRA 500 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCcc
Confidence 569999999953211 11 12 699999999987664
No 206
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=21.57 E-value=43 Score=31.46 Aligned_cols=36 Identities=22% Similarity=0.562 Sum_probs=26.0
Q ss_pred CCCcccccccccccccCCCceEee--cCCCcccHhhHH
Q 039522 100 SCSAAMECCVCLSRFQSDEEVSEL--SCKHFFHRGCLD 135 (152)
Q Consensus 100 ~~~~~~~C~ICl~~~~~~~~~~~l--~C~H~fh~~Ci~ 135 (152)
..+.+..|.||++.=.....+... .|+-..|.+|..
T Consensus 215 ~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg 252 (1051)
T KOG0955|consen 215 LLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG 252 (1051)
T ss_pred ccCCCccceeecccccCCCceEEEcCCCcchhhhhccC
Confidence 445778899999975553333332 789999999987
No 207
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=21.42 E-value=49 Score=28.26 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=9.1
Q ss_pred cccccccccccccCC
Q 039522 103 AAMECCVCLSRFQSD 117 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~ 117 (152)
...-|+-||+++...
T Consensus 25 ~~~yCp~CL~~~p~~ 39 (483)
T PF05502_consen 25 DSYYCPNCLFEVPSS 39 (483)
T ss_pred ceeECccccccCChh
Confidence 345577777776443
No 208
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.02 E-value=61 Score=22.78 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=14.2
Q ss_pred cccccccccCCCceEeecCCCcccHh
Q 039522 107 CCVCLSRFQSDEEVSELSCKHFFHRG 132 (152)
Q Consensus 107 C~ICl~~~~~~~~~~~l~C~H~fh~~ 132 (152)
=-||.+. ..++....|||.|+..
T Consensus 60 lfi~qs~---~~rv~rcecghsf~d~ 82 (165)
T COG4647 60 LFICQSA---QKRVIRCECGHSFGDY 82 (165)
T ss_pred EEEEecc---cccEEEEeccccccCh
Confidence 3455443 2345566899999853
No 209
>PLN02248 cellulose synthase-like protein
Probab=20.98 E-value=77 Score=30.04 Aligned_cols=27 Identities=22% Similarity=0.528 Sum_probs=22.6
Q ss_pred cCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 124 SCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 124 ~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
.|+..+|++|...-++. ...||-|+.+
T Consensus 149 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 175 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKS-GGICPGCKEP 175 (1135)
T ss_pred cccchhHHhHhhhhhhc-CCCCCCCccc
Confidence 57899999999988875 4489999875
No 210
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=20.73 E-value=51 Score=25.57 Aligned_cols=42 Identities=17% Similarity=0.282 Sum_probs=29.6
Q ss_pred ccccccccccccCCCceEeecCCCcccHhhHHHHhcCC-CCcccC
Q 039522 104 AMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNK-HSTCPL 147 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~-~~~CP~ 147 (152)
+..|+|-+.++.-+ +....|+|.|-.+-|.+.++.. -..||.
T Consensus 189 ~nrCpitl~p~~~p--ils~kcnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 189 SNRCPITLNPDFYP--ILSSKCNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred cccCCcccCcchhH--HHHhhhcccccHHHHHHHhcCCceeecch
Confidence 46799988776554 1223899999999999998732 224664
No 211
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=20.25 E-value=58 Score=27.73 Aligned_cols=47 Identities=17% Similarity=0.624 Sum_probs=28.2
Q ss_pred ccccccccccc-cCCCceEee-cCCCcccHhhHHHHhcC-------CCCcccCCCC
Q 039522 104 AMECCVCLSRF-QSDEEVSEL-SCKHFFHRGCLDKWFDN-------KHSTCPLCRS 150 (152)
Q Consensus 104 ~~~C~ICl~~~-~~~~~~~~l-~C~H~fh~~Ci~~wl~~-------~~~~CP~Cr~ 150 (152)
...|.+|..-. ....++... .|+.-||..|.....+. ....|-+|..
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~ 223 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNR 223 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhcc
Confidence 44599998543 222333333 78999999997664321 1125777753
No 212
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=20.06 E-value=53 Score=17.13 Aligned_cols=9 Identities=33% Similarity=1.154 Sum_probs=6.5
Q ss_pred CcccCCCCC
Q 039522 143 STCPLCRSI 151 (152)
Q Consensus 143 ~~CP~Cr~~ 151 (152)
..||+|.++
T Consensus 19 ~~CP~Cg~~ 27 (34)
T cd00729 19 EKCPICGAP 27 (34)
T ss_pred CcCcCCCCc
Confidence 379998763
Done!