Query 039522
Match_columns 152
No_of_seqs 219 out of 2163
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 18:07:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039522.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039522hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 5.1E-17 1.7E-21 106.2 5.6 70 65-152 18-87 (91)
2 2kiz_A E3 ubiquitin-protein li 99.6 2.1E-16 7.2E-21 97.9 5.3 52 100-152 10-61 (69)
3 2ep4_A Ring finger protein 24; 99.6 2E-16 7E-21 99.2 5.2 52 100-152 11-62 (74)
4 2ect_A Ring finger protein 126 99.6 2E-16 6.9E-21 100.2 5.1 52 100-152 11-62 (78)
5 1iym_A EL5; ring-H2 finger, ub 99.6 2.7E-16 9.3E-21 93.1 4.0 49 103-152 4-53 (55)
6 1x4j_A Ring finger protein 38; 99.6 2.3E-16 7.9E-21 99.3 3.6 49 103-152 22-70 (75)
7 2ecl_A Ring-box protein 2; RNF 99.6 4.8E-15 1.6E-19 94.8 5.9 49 103-152 14-74 (81)
8 2ea6_A Ring finger protein 4; 99.6 2.6E-15 9E-20 92.5 4.1 52 100-152 11-66 (69)
9 2d8t_A Dactylidin, ring finger 99.5 5.8E-15 2E-19 91.9 4.5 49 100-152 11-59 (71)
10 2ecm_A Ring finger and CHY zin 99.5 5.2E-15 1.8E-19 87.4 3.8 49 103-152 4-53 (55)
11 3ng2_A RNF4, snurf, ring finge 99.5 4E-15 1.4E-19 92.3 3.0 50 102-152 8-61 (71)
12 2ysl_A Tripartite motif-contai 99.5 2.5E-14 8.4E-19 89.2 6.1 50 100-152 16-67 (73)
13 1v87_A Deltex protein 2; ring- 99.5 1.3E-14 4.6E-19 98.1 5.0 50 103-152 24-92 (114)
14 2ecy_A TNF receptor-associated 99.5 2.6E-14 9E-19 87.6 5.5 48 102-152 13-60 (66)
15 2csy_A Zinc finger protein 183 99.5 2.6E-14 9E-19 91.1 4.9 49 100-152 11-59 (81)
16 2djb_A Polycomb group ring fin 99.5 3.6E-14 1.2E-18 88.5 5.3 49 100-152 11-60 (72)
17 2xeu_A Ring finger protein 4; 99.5 1.5E-14 5.1E-19 87.8 2.9 49 103-152 2-54 (64)
18 2ct2_A Tripartite motif protei 99.5 5.1E-14 1.8E-18 90.7 5.6 53 100-152 11-66 (88)
19 3dpl_R Ring-box protein 1; ubi 99.5 4.2E-14 1.4E-18 94.9 5.2 49 103-152 36-99 (106)
20 2yur_A Retinoblastoma-binding 99.5 7.1E-14 2.4E-18 87.7 4.9 49 100-151 11-61 (74)
21 1t1h_A Gspef-atpub14, armadill 99.4 7.7E-14 2.6E-18 88.2 4.5 48 102-152 6-53 (78)
22 2ecn_A Ring finger protein 141 99.4 2.3E-14 8E-19 88.8 2.0 46 102-152 13-58 (70)
23 2d8s_A Cellular modulator of i 99.4 9.6E-14 3.3E-18 88.6 4.5 50 102-152 13-68 (80)
24 2ysj_A Tripartite motif-contai 99.4 2.2E-13 7.4E-18 82.7 5.6 46 100-148 16-63 (63)
25 1g25_A CDK-activating kinase a 99.4 1.2E-13 4.2E-18 84.3 4.3 49 104-152 3-53 (65)
26 1chc_A Equine herpes virus-1 r 99.4 6.3E-14 2.1E-18 86.3 2.9 47 103-152 4-50 (68)
27 2ecw_A Tripartite motif-contai 99.4 3.7E-13 1.3E-17 85.8 6.1 49 101-152 16-69 (85)
28 2egp_A Tripartite motif-contai 99.4 7.7E-14 2.6E-18 88.2 2.7 49 101-152 9-63 (79)
29 4ayc_A E3 ubiquitin-protein li 99.4 9.5E-14 3.2E-18 97.1 3.4 46 103-152 52-97 (138)
30 2ecj_A Tripartite motif-contai 99.4 3.9E-13 1.3E-17 80.0 5.3 45 101-148 12-58 (58)
31 3lrq_A E3 ubiquitin-protein li 99.4 9.8E-14 3.4E-18 92.0 2.7 47 103-152 21-68 (100)
32 3ztg_A E3 ubiquitin-protein li 99.4 4.8E-13 1.6E-17 87.0 4.9 50 100-152 9-60 (92)
33 2ecv_A Tripartite motif-contai 99.4 7.3E-13 2.5E-17 84.4 5.2 49 101-152 16-69 (85)
34 3fl2_A E3 ubiquitin-protein li 99.4 3.1E-13 1E-17 92.7 3.4 47 103-152 51-97 (124)
35 3l11_A E3 ubiquitin-protein li 99.3 2.2E-13 7.5E-18 92.3 2.0 49 101-152 12-60 (115)
36 4a0k_B E3 ubiquitin-protein li 99.3 1.1E-13 3.7E-18 94.4 0.4 48 103-151 47-109 (117)
37 4ap4_A E3 ubiquitin ligase RNF 99.3 6.2E-13 2.1E-17 91.4 3.8 49 103-152 6-58 (133)
38 2ct0_A Non-SMC element 1 homol 99.3 1.5E-12 5.1E-17 81.7 5.0 51 100-152 11-62 (74)
39 1e4u_A Transcriptional repress 99.3 2.1E-12 7E-17 82.0 5.2 51 102-152 9-60 (78)
40 2y43_A E3 ubiquitin-protein li 99.3 8.8E-13 3E-17 87.0 3.4 46 103-152 21-67 (99)
41 2ckl_B Ubiquitin ligase protei 99.3 1.2E-12 4E-17 94.0 4.3 48 102-152 52-100 (165)
42 2ckl_A Polycomb group ring fin 99.3 1.7E-12 5.7E-17 87.0 4.1 46 103-152 14-60 (108)
43 1z6u_A NP95-like ring finger p 99.3 1.5E-12 5.1E-17 92.4 3.4 47 103-152 77-123 (150)
44 3hct_A TNF receptor-associated 99.3 2E-12 6.7E-17 88.0 3.2 48 102-152 16-63 (118)
45 1jm7_A BRCA1, breast cancer ty 99.2 2.9E-12 9.8E-17 86.0 3.0 47 103-152 20-68 (112)
46 1rmd_A RAG1; V(D)J recombinati 99.2 3E-12 1E-16 86.7 2.8 47 103-152 22-68 (116)
47 1wgm_A Ubiquitin conjugation f 99.2 1.8E-11 6.1E-16 80.9 6.3 48 101-152 19-67 (98)
48 2kr4_A Ubiquitin conjugation f 99.2 1.1E-11 3.7E-16 79.8 4.7 48 101-152 11-58 (85)
49 4ap4_A E3 ubiquitin ligase RNF 99.2 7.9E-12 2.7E-16 85.8 3.3 49 103-152 71-123 (133)
50 2kre_A Ubiquitin conjugation f 99.2 2.6E-11 9E-16 80.3 5.6 47 102-152 27-73 (100)
51 2vje_A E3 ubiquitin-protein li 99.2 9.5E-12 3.2E-16 75.9 2.9 47 102-152 6-55 (64)
52 3knv_A TNF receptor-associated 99.2 3.7E-12 1.3E-16 89.5 0.9 47 102-151 29-75 (141)
53 1bor_A Transcription factor PM 99.1 8.2E-12 2.8E-16 74.2 1.4 44 102-152 4-47 (56)
54 2y1n_A E3 ubiquitin-protein li 99.1 7E-11 2.4E-15 95.0 6.7 46 104-152 332-377 (389)
55 2vje_B MDM4 protein; proto-onc 99.1 2.8E-11 9.6E-16 73.6 2.9 46 103-152 6-54 (63)
56 1jm7_B BARD1, BRCA1-associated 99.1 1.9E-11 6.6E-16 83.0 1.2 44 103-152 21-65 (117)
57 2c2l_A CHIP, carboxy terminus 99.1 9.3E-11 3.2E-15 89.7 4.5 49 101-152 205-253 (281)
58 4ic3_A E3 ubiquitin-protein li 99.1 3.5E-11 1.2E-15 75.4 1.8 42 103-152 23-65 (74)
59 3hcs_A TNF receptor-associated 99.0 7.8E-11 2.7E-15 84.7 3.2 48 102-152 16-63 (170)
60 2ea5_A Cell growth regulator w 99.0 4.3E-10 1.5E-14 69.3 4.2 45 100-152 11-56 (68)
61 2yu4_A E3 SUMO-protein ligase 99.0 3.1E-10 1.1E-14 74.2 3.6 47 102-151 5-59 (94)
62 3k1l_B Fancl; UBC, ring, RWD, 99.0 1.3E-10 4.6E-15 91.6 1.7 53 100-152 304-371 (381)
63 2f42_A STIP1 homology and U-bo 98.9 6.5E-10 2.2E-14 80.8 4.1 48 102-152 104-151 (179)
64 2ecg_A Baculoviral IAP repeat- 98.9 4.2E-10 1.4E-14 70.5 1.8 41 104-152 25-66 (75)
65 1wim_A KIAA0161 protein; ring 98.8 9.5E-10 3.3E-14 71.7 2.2 49 103-151 4-61 (94)
66 1vyx_A ORF K3, K3RING; zinc-bi 98.8 2.4E-09 8.2E-14 64.4 3.6 47 103-152 5-57 (60)
67 2yho_A E3 ubiquitin-protein li 98.8 1.1E-09 3.7E-14 69.5 1.2 41 104-152 18-59 (79)
68 3htk_C E3 SUMO-protein ligase 98.7 1.1E-08 3.7E-13 78.1 4.5 49 101-151 178-229 (267)
69 3t6p_A Baculoviral IAP repeat- 98.6 5.9E-09 2E-13 82.9 1.4 42 103-152 294-336 (345)
70 2bay_A PRE-mRNA splicing facto 98.5 2.4E-08 8.3E-13 60.1 1.8 44 105-152 4-48 (61)
71 3vk6_A E3 ubiquitin-protein li 98.5 7.2E-08 2.5E-12 63.0 3.8 45 106-152 3-47 (101)
72 3nw0_A Non-structural maintena 98.0 2.7E-06 9.1E-11 64.4 3.2 47 103-151 179-226 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 95.9 0.0044 1.5E-07 40.0 2.7 35 103-137 2-36 (101)
74 2lri_C Autoimmune regulator; Z 95.5 0.014 4.7E-07 35.2 3.5 45 103-150 11-58 (66)
75 2ko5_A Ring finger protein Z; 94.0 0.033 1.1E-06 35.7 2.6 44 103-152 27-71 (99)
76 1weo_A Cellulose synthase, cat 93.6 0.24 8.4E-06 31.4 6.0 50 103-152 15-68 (93)
77 1wil_A KIAA1045 protein; ring 91.8 0.22 7.6E-06 31.2 3.9 36 101-137 12-47 (89)
78 2l5u_A Chromodomain-helicase-D 91.5 0.12 4.1E-06 30.3 2.4 47 101-150 8-57 (61)
79 1mm2_A MI2-beta; PHD, zinc fin 91.4 0.06 2E-06 31.7 1.0 47 102-151 7-56 (61)
80 1we9_A PHD finger family prote 90.7 0.04 1.4E-06 32.6 -0.3 48 103-150 5-57 (64)
81 2yql_A PHD finger protein 21A; 90.1 0.032 1.1E-06 32.2 -1.1 46 102-150 7-55 (56)
82 1wep_A PHF8; structural genomi 90.0 0.33 1.1E-05 29.8 3.5 48 102-150 10-62 (79)
83 1f62_A Transcription factor WS 89.9 0.17 5.9E-06 28.3 2.0 45 106-150 2-49 (51)
84 2ysm_A Myeloid/lymphoid or mix 89.8 0.12 4.1E-06 33.8 1.5 37 103-139 6-42 (111)
85 2cs3_A Protein C14ORF4, MY039 89.5 0.79 2.7E-05 28.5 4.9 40 101-140 12-52 (93)
86 2lv9_A Histone-lysine N-methyl 88.7 0.16 5.3E-06 32.8 1.3 47 103-150 27-75 (98)
87 1fp0_A KAP-1 corepressor; PHD 88.4 0.25 8.6E-06 31.3 2.1 50 98-150 19-71 (88)
88 2lbm_A Transcriptional regulat 87.8 0.83 2.8E-05 31.5 4.6 45 103-150 62-116 (142)
89 1z2q_A LM5-1; membrane protein 87.7 0.66 2.3E-05 28.8 3.8 40 98-137 15-55 (84)
90 1wfk_A Zinc finger, FYVE domai 87.4 0.49 1.7E-05 29.8 3.1 35 102-136 7-42 (88)
91 3u5n_A E3 ubiquitin-protein li 87.0 0.11 3.7E-06 37.9 -0.3 44 103-150 6-53 (207)
92 2k16_A Transcription initiatio 87.0 0.22 7.5E-06 30.2 1.2 48 102-150 16-67 (75)
93 3v43_A Histone acetyltransfera 87.0 0.67 2.3E-05 30.4 3.7 33 103-135 4-42 (112)
94 3t7l_A Zinc finger FYVE domain 86.1 0.83 2.8E-05 28.8 3.6 39 100-138 16-55 (90)
95 1x4u_A Zinc finger, FYVE domai 85.4 0.84 2.9E-05 28.3 3.4 39 99-137 9-48 (84)
96 1wev_A Riken cDNA 1110020M19; 85.2 0.28 9.5E-06 30.9 1.0 48 102-149 14-70 (88)
97 2yt5_A Metal-response element- 85.1 0.43 1.5E-05 28.1 1.8 48 103-150 5-60 (66)
98 1z60_A TFIIH basal transcripti 85.0 0.39 1.3E-05 28.1 1.5 43 105-148 16-58 (59)
99 3m62_A Ubiquitin conjugation f 84.5 1 3.5E-05 40.1 4.5 47 102-152 889-936 (968)
100 2dj7_A Actin-binding LIM prote 84.4 1.3 4.5E-05 26.9 3.9 39 103-152 14-52 (80)
101 2e6r_A Jumonji/ARID domain-con 82.8 0.55 1.9E-05 29.8 1.7 52 97-149 9-64 (92)
102 1joc_A EEA1, early endosomal a 82.8 0.89 3E-05 30.5 2.8 38 100-137 65-103 (125)
103 3v43_A Histone acetyltransfera 82.5 0.42 1.4E-05 31.4 1.1 45 106-150 63-111 (112)
104 3ql9_A Transcriptional regulat 82.4 1.6 5.3E-05 29.6 3.9 44 103-150 56-110 (129)
105 2yw8_A RUN and FYVE domain-con 82.2 0.85 2.9E-05 28.2 2.4 37 101-137 16-53 (82)
106 2vpb_A Hpygo1, pygopus homolog 82.0 1.1 3.7E-05 26.5 2.7 34 102-135 6-41 (65)
107 2cu8_A Cysteine-rich protein 2 82.0 1.2 4.1E-05 26.5 3.0 28 104-133 9-36 (76)
108 1x64_A Alpha-actinin-2 associa 81.2 3.2 0.00011 25.5 4.9 38 102-151 23-60 (89)
109 2l43_A N-teminal domain from h 80.9 2.2 7.7E-05 26.7 4.0 48 102-149 23-73 (88)
110 2ri7_A Nucleosome-remodeling f 80.6 0.31 1E-05 34.3 -0.2 47 103-150 7-58 (174)
111 1wen_A Inhibitor of growth fam 80.2 1.6 5.4E-05 26.3 3.0 43 103-150 15-64 (71)
112 2co8_A NEDD9 interacting prote 80.2 2.3 7.7E-05 25.8 3.8 29 103-133 14-42 (82)
113 2d8y_A Eplin protein; LIM doma 77.4 2.9 9.8E-05 25.8 3.8 28 104-133 15-42 (91)
114 2ku3_A Bromodomain-containing 77.3 2.7 9.2E-05 25.2 3.4 49 102-150 14-65 (71)
115 1vfy_A Phosphatidylinositol-3- 77.1 1.6 5.3E-05 26.3 2.3 32 105-136 12-44 (73)
116 1weu_A Inhibitor of growth fam 76.6 2.7 9.4E-05 26.6 3.5 44 103-151 35-85 (91)
117 1x62_A C-terminal LIM domain p 76.0 3.1 0.00011 24.9 3.6 28 103-133 14-41 (79)
118 3i2d_A E3 SUMO-protein ligase 74.9 2.3 8E-05 33.8 3.4 48 103-152 248-298 (371)
119 4gne_A Histone-lysine N-methyl 74.6 1.6 5.5E-05 28.5 2.0 44 100-149 11-60 (107)
120 2cor_A Pinch protein; LIM doma 74.2 3.8 0.00013 24.6 3.6 28 103-133 14-41 (79)
121 4fo9_A E3 SUMO-protein ligase 74.1 2.6 8.9E-05 33.4 3.5 48 103-152 214-264 (360)
122 1y02_A CARP2, FYVE-ring finger 73.1 1.5 5.3E-05 29.2 1.7 45 103-148 18-63 (120)
123 1wem_A Death associated transc 72.9 4.6 0.00016 24.2 3.7 45 104-150 16-69 (76)
124 1dvp_A HRS, hepatocyte growth 72.3 1.7 6E-05 31.7 2.0 35 103-137 160-195 (220)
125 1zfo_A LAsp-1; LIM domain, zin 72.0 1.4 4.7E-05 22.0 1.0 27 105-133 4-30 (31)
126 3mpx_A FYVE, rhogef and PH dom 71.9 0.79 2.7E-05 36.6 0.0 50 101-150 372-428 (434)
127 1iml_A CRIP, cysteine rich int 71.8 1.5 5.1E-05 26.1 1.3 43 103-150 26-69 (76)
128 3shb_A E3 ubiquitin-protein li 70.4 0.57 1.9E-05 28.8 -0.9 44 106-150 28-76 (77)
129 2zet_C Melanophilin; complex, 69.6 3.2 0.00011 28.8 2.8 32 103-134 67-100 (153)
130 3ask_A E3 ubiquitin-protein li 69.5 1.1 3.6E-05 33.3 0.2 46 106-151 176-225 (226)
131 2e6s_A E3 ubiquitin-protein li 69.4 1 3.5E-05 27.6 0.1 44 106-150 28-76 (77)
132 3zyq_A Hepatocyte growth facto 69.2 2.2 7.5E-05 31.4 1.9 35 103-137 163-198 (226)
133 2o35_A Hypothetical protein DU 68.8 1.9 6.5E-05 27.8 1.3 11 129-139 43-53 (105)
134 1zbd_B Rabphilin-3A; G protein 68.8 2 6.9E-05 29.2 1.5 33 103-135 54-88 (134)
135 3fyb_A Protein of unknown func 68.6 1.9 6.6E-05 27.7 1.3 11 129-139 42-52 (104)
136 3asl_A E3 ubiquitin-protein li 67.3 1 3.6E-05 27.0 -0.1 45 106-151 20-69 (70)
137 2l4z_A DNA endonuclease RBBP8, 66.8 7.5 0.00026 25.5 4.1 38 103-151 60-97 (123)
138 2kwj_A Zinc finger protein DPF 66.1 1.4 4.8E-05 28.9 0.3 32 106-137 3-41 (114)
139 1xwh_A Autoimmune regulator; P 65.7 3.2 0.00011 24.3 1.8 45 103-150 7-54 (66)
140 1g47_A Pinch protein; LIM doma 64.9 7.3 0.00025 22.8 3.4 29 104-133 11-39 (77)
141 1x63_A Skeletal muscle LIM-pro 64.3 6.1 0.00021 23.5 3.0 28 105-133 16-43 (82)
142 2jne_A Hypothetical protein YF 64.3 2.6 9E-05 27.0 1.3 39 105-152 33-71 (101)
143 1wyh_A SLIM 2, skeletal muscle 64.2 6.8 0.00023 22.6 3.2 10 106-115 7-16 (72)
144 3mjh_B Early endosome antigen 64.2 2.1 7.2E-05 22.0 0.7 16 103-118 4-19 (34)
145 1wd2_A Ariadne-1 protein homol 63.0 0.7 2.4E-05 26.9 -1.5 36 105-140 7-47 (60)
146 1x4l_A Skeletal muscle LIM-pro 62.7 8.7 0.0003 22.2 3.4 28 105-133 6-35 (72)
147 2puy_A PHD finger protein 21A; 62.6 3.7 0.00013 23.5 1.7 45 103-150 4-51 (60)
148 2kgg_A Histone demethylase jar 62.6 1.8 6.2E-05 24.2 0.3 44 106-149 4-52 (52)
149 1x61_A Thyroid receptor intera 62.2 8.4 0.00029 22.2 3.3 34 104-139 33-66 (72)
150 2d8x_A Protein pinch; LIM doma 61.2 6.9 0.00024 22.5 2.8 10 106-115 7-16 (70)
151 2dar_A PDZ and LIM domain prot 60.8 9 0.00031 23.4 3.4 27 104-133 25-51 (90)
152 2d8z_A Four and A half LIM dom 59.7 10 0.00036 21.7 3.4 12 126-137 51-62 (70)
153 1x4k_A Skeletal muscle LIM-pro 59.7 7 0.00024 22.6 2.6 11 106-116 7-17 (72)
154 2xb1_A Pygopus homolog 2, B-ce 58.3 5.7 0.0002 25.6 2.2 47 104-150 3-60 (105)
155 2d8v_A Zinc finger FYVE domain 58.1 6.3 0.00022 23.4 2.1 32 102-137 6-38 (67)
156 2jrp_A Putative cytoplasmic pr 57.3 4.6 0.00016 25.0 1.5 13 105-117 3-15 (81)
157 1wee_A PHD finger family prote 56.9 7.1 0.00024 23.1 2.3 48 102-150 14-65 (72)
158 1m3v_A FLIN4, fusion of the LI 56.2 11 0.00039 24.4 3.4 46 105-152 33-79 (122)
159 1v6g_A Actin binding LIM prote 55.9 7.7 0.00026 23.1 2.4 26 105-133 16-41 (81)
160 2l3k_A Rhombotin-2, linker, LI 55.2 7.2 0.00024 25.4 2.3 36 103-139 35-70 (123)
161 1a7i_A QCRP2 (LIM1); LIM domai 55.0 2.9 0.0001 25.1 0.3 10 106-115 9-18 (81)
162 3f6q_B LIM and senescent cell 53.6 12 0.00042 21.3 3.0 30 103-133 10-39 (72)
163 1x68_A FHL5 protein; four-and- 53.2 12 0.0004 21.9 2.9 28 105-133 6-35 (76)
164 1x6a_A LIMK-2, LIM domain kina 53.1 7.9 0.00027 23.0 2.1 35 104-138 41-75 (81)
165 1nyp_A Pinch protein; LIM doma 51.9 13 0.00043 21.0 2.8 26 105-133 6-31 (66)
166 2gmg_A Hypothetical protein PF 51.7 3.2 0.00011 27.0 0.1 23 123-151 71-93 (105)
167 2cur_A Skeletal muscle LIM-pro 50.4 10 0.00034 21.7 2.2 13 126-138 51-63 (69)
168 2a20_A Regulating synaptic mem 50.4 12 0.0004 21.7 2.3 48 102-149 7-58 (62)
169 1wew_A DNA-binding family prot 49.6 22 0.00076 21.3 3.7 47 103-150 15-71 (78)
170 2vnf_A ING 4, P29ING4, inhibit 49.2 2.3 7.7E-05 24.6 -0.9 43 103-150 9-58 (60)
171 2jvx_A NF-kappa-B essential mo 47.4 5.7 0.00019 19.4 0.6 9 143-151 4-12 (28)
172 1wig_A KIAA1808 protein; LIM d 47.4 18 0.00061 21.1 3.0 35 103-138 30-64 (73)
173 2pv0_B DNA (cytosine-5)-methyl 46.5 18 0.0006 28.9 3.6 33 103-138 92-126 (386)
174 3a1b_A DNA (cytosine-5)-methyl 45.5 14 0.00047 25.8 2.5 33 103-139 78-113 (159)
175 3c6w_A P28ING5, inhibitor of g 43.6 3.3 0.00011 23.8 -0.8 43 103-150 8-57 (59)
176 2ehe_A Four and A half LIM dom 43.5 19 0.00064 21.3 2.7 28 105-133 16-43 (82)
177 2csz_A Synaptotagmin-like prot 42.4 13 0.00045 22.6 1.8 34 101-134 22-57 (76)
178 2cuq_A Four and A half LIM dom 40.8 19 0.00065 21.1 2.4 9 106-114 17-25 (80)
179 2cup_A Skeletal muscle LIM-pro 39.7 28 0.00096 21.3 3.2 44 104-152 33-76 (101)
180 1j2o_A FLIN2, fusion of rhombo 39.4 17 0.00058 23.2 2.1 36 103-139 29-65 (114)
181 1b8t_A Protein (CRP1); LIM dom 39.3 20 0.00067 25.2 2.7 13 105-117 116-128 (192)
182 2egq_A FHL1 protein; LIM domai 39.0 21 0.00073 20.7 2.4 37 105-151 16-55 (77)
183 2dlo_A Thyroid receptor-intera 38.4 17 0.00057 21.5 1.9 10 106-115 17-26 (81)
184 3vhs_A ATPase wrnip1; zinc fin 37.0 10 0.00035 18.1 0.6 7 144-150 8-14 (29)
185 2iyb_E Testin, TESS, TES; LIM 36.8 22 0.00077 20.0 2.2 27 106-133 4-32 (65)
186 2g6q_A Inhibitor of growth pro 35.6 5.4 0.00019 23.1 -0.7 43 103-150 10-59 (62)
187 1x3h_A Leupaxin; paxillin fami 35.4 20 0.00067 21.0 1.9 10 106-115 17-26 (80)
188 2jmo_A Parkin; IBR, E3 ligase, 33.8 2.9 0.0001 25.5 -2.2 14 124-137 55-68 (80)
189 3o70_A PHD finger protein 13; 33.7 18 0.00061 21.2 1.4 46 103-150 18-66 (68)
190 2xjy_A Rhombotin-2; oncoprotei 33.1 33 0.0011 22.1 2.8 24 126-150 51-74 (131)
191 1rut_X Flinc4, fusion protein 32.4 28 0.00096 24.3 2.5 27 106-133 71-97 (188)
192 2ct7_A Ring finger protein 31; 31.6 4.2 0.00014 25.1 -1.8 14 124-137 48-61 (86)
193 2kdx_A HYPA, hydrogenase/ureas 30.1 26 0.00088 22.7 1.9 24 121-151 75-99 (119)
194 2jtn_A LIM domain-binding prot 29.8 31 0.0011 23.9 2.4 13 104-116 60-72 (182)
195 3pwf_A Rubrerythrin; non heme 29.1 32 0.0011 23.9 2.3 9 143-151 154-162 (170)
196 2lcq_A Putative toxin VAPC6; P 27.5 18 0.00062 24.7 0.8 22 123-151 136-157 (165)
197 2lq6_A Bromodomain-containing 27.5 20 0.00068 22.1 0.9 33 104-137 17-51 (87)
198 3kv5_D JMJC domain-containing 26.9 42 0.0014 27.5 3.0 46 103-149 36-86 (488)
199 2xqn_T Testin, TESS; metal-bin 26.4 59 0.002 20.7 3.2 45 103-152 29-73 (126)
200 1l8d_A DNA double-strand break 26.3 14 0.00049 23.5 0.0 6 106-111 49-54 (112)
201 1wg2_A Zinc finger (AN1-like) 24.9 90 0.0031 18.2 3.4 27 103-131 14-40 (64)
202 2kpi_A Uncharacterized protein 23.3 40 0.0014 18.9 1.6 15 103-117 9-23 (56)
203 3kqi_A GRC5, PHD finger protei 21.1 86 0.0029 18.4 2.9 45 106-150 11-60 (75)
204 2ffw_A Midline-1; B-BOX, ring 20.6 1.3E+02 0.0044 17.8 3.6 34 103-136 29-62 (78)
205 2fiy_A Protein FDHE homolog; F 20.2 8.9 0.00031 29.6 -2.2 43 102-150 180-230 (309)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.67 E-value=5.1e-17 Score=106.23 Aligned_cols=70 Identities=26% Similarity=0.697 Sum_probs=55.4
Q ss_pred hHHHhhhcCHhhhhhhhcccCCCCcccccCCCCCCCCCcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCc
Q 039522 65 DNARERRISVTQFKSLCDSRSSSSSTVARSNGGSTSCSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHST 144 (152)
Q Consensus 65 ~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~ 144 (152)
.++..+.+|...+..... ....+..|+||++.|..++.++.++|+|.||..||.+|++ .+.+
T Consensus 18 s~~~i~~lp~~~~~~~~~-----------------~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~-~~~~ 79 (91)
T 2l0b_A 18 SKESIDALPEILVTEDHG-----------------AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ-KSGT 79 (91)
T ss_dssp CHHHHHTSCEEECCTTCS-----------------SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT-TTCB
T ss_pred CHHHHHhCCCeeeccccc-----------------ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH-cCCc
Confidence 567777777766544321 1235678999999999988888899999999999999998 4559
Q ss_pred ccCCCCCC
Q 039522 145 CPLCRSIL 152 (152)
Q Consensus 145 CP~Cr~~~ 152 (152)
||+||+++
T Consensus 80 CP~Cr~~~ 87 (91)
T 2l0b_A 80 CPVCRCMF 87 (91)
T ss_dssp CTTTCCBS
T ss_pred CcCcCccC
Confidence 99999865
No 2
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=2.1e-16 Score=97.85 Aligned_cols=52 Identities=35% Similarity=0.925 Sum_probs=44.6
Q ss_pred CCCcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 100 SCSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 100 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
.......|+||++.+..+..++.++|+|.||..||.+|++. +.+||+||+++
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~ 61 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDI 61 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBS
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccc
Confidence 33466789999999988888888899999999999999985 45899999865
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2e-16 Score=99.20 Aligned_cols=52 Identities=38% Similarity=0.890 Sum_probs=45.1
Q ss_pred CCCcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 100 SCSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 100 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
......+|+||++.+..+..+..++|+|.||..||.+|++.+ .+||+||+++
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-~~CP~Cr~~~ 62 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-KVCPLCNMPV 62 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-SBCTTTCCBC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-CcCCCcCccc
Confidence 344667899999999998888888999999999999999854 4999999875
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.64 E-value=2e-16 Score=100.20 Aligned_cols=52 Identities=37% Similarity=1.002 Sum_probs=45.1
Q ss_pred CCCcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 100 SCSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 100 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
......+|+||++.|..+..+..++|+|.||..||.+|++. +.+||+||+++
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~ 62 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSL 62 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCcc
Confidence 34567789999999998888888899999999999999974 45999999875
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.62 E-value=2.7e-16 Score=93.10 Aligned_cols=49 Identities=47% Similarity=1.056 Sum_probs=43.2
Q ss_pred cccccccccccccCCCceEeec-CCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELS-CKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~-C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
+..+|+||++.+..++.+..++ |+|.||..|+.+|++. +.+||+||+++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEe
Confidence 5568999999999988888886 9999999999999984 55999999875
No 6
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.3e-16 Score=99.31 Aligned_cols=49 Identities=39% Similarity=0.946 Sum_probs=44.0
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
+..+|+||++.|..++.++.++|+|.||..||.+|++. +.+||+||+++
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~ 70 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADS 70 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcC
Confidence 56789999999999988888999999999999999984 45999999875
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=4.8e-15 Score=94.81 Aligned_cols=49 Identities=27% Similarity=0.769 Sum_probs=39.0
Q ss_pred cccccccccccccC-----------CCceEee-cCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQS-----------DEEVSEL-SCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~-----------~~~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
++.+|+||++.|.. ++.++.+ +|+|.||..||.+|++. +.+||+||+++
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~ 74 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDW 74 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCc
Confidence 55678888888854 3445566 69999999999999985 45999999875
No 8
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.6e-15 Score=92.52 Aligned_cols=52 Identities=27% Similarity=0.671 Sum_probs=42.5
Q ss_pred CCCcccccccccccccCC----CceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 100 SCSAAMECCVCLSRFQSD----EEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 100 ~~~~~~~C~ICl~~~~~~----~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
.......|+||++.+..+ ..+..++|+|.||..||.+|++. +.+||+||+++
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~ 66 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKI 66 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCcc
Confidence 345677899999998764 33456799999999999999984 55999999875
No 9
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=5.8e-15 Score=91.92 Aligned_cols=49 Identities=29% Similarity=0.548 Sum_probs=41.1
Q ss_pred CCCcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 100 SCSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 100 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
......+|+||++.+..+ +.++|+|.||..||.+|+.. +.+||+||+++
T Consensus 11 ~~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~ 59 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWL-GKRCALCRQEI 59 (71)
T ss_dssp SSSSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTC-SSBCSSSCCBC
T ss_pred cCCCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHC-CCcCcCcCchh
Confidence 344667899999998765 66799999999999999974 46999999875
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.53 E-value=5.2e-15 Score=87.44 Aligned_cols=49 Identities=27% Similarity=0.722 Sum_probs=40.9
Q ss_pred cccccccccccccCCC-ceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDE-EVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~-~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
...+|+||++.+..++ .+..++|+|.||..|+.+|++.. .+||+||+++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcC
Confidence 4568999999996654 45566999999999999999854 6999999875
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.52 E-value=4e-15 Score=92.29 Aligned_cols=50 Identities=28% Similarity=0.723 Sum_probs=41.4
Q ss_pred CcccccccccccccCC----CceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 102 SAAMECCVCLSRFQSD----EEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~----~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
.+..+|+||++.+..+ +.+..++|||.||..||.+|++.+ .+||+||+++
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~ 61 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKI 61 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-CCCCCCCCcc
Confidence 3667899999998764 445667999999999999999844 5999999864
No 12
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.5e-14 Score=89.24 Aligned_cols=50 Identities=24% Similarity=0.612 Sum_probs=41.2
Q ss_pred CCCcccccccccccccCCCceEeecCCCcccHhhHHHHhcC--CCCcccCCCCCC
Q 039522 100 SCSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDN--KHSTCPLCRSIL 152 (152)
Q Consensus 100 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~--~~~~CP~Cr~~~ 152 (152)
.......|+||++.+..+ ..++|||.||..|+.+|++. .+..||+||+++
T Consensus 16 ~~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67 (73)
T ss_dssp CCCCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCC
T ss_pred hCccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcC
Confidence 345677899999998764 55799999999999999963 455899999875
No 13
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.51 E-value=1.3e-14 Score=98.05 Aligned_cols=50 Identities=24% Similarity=0.615 Sum_probs=39.2
Q ss_pred cccccccccccccCCC---------------ceEeecCCCcccHhhHHHHhc----CCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDE---------------EVSELSCKHFFHRGCLDKWFD----NKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~---------------~~~~l~C~H~fh~~Ci~~wl~----~~~~~CP~Cr~~~ 152 (152)
.+.+|+||++.|..+. .+..++|+|.||..||.+|+. ..+.+||+||+.+
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 3458999999997653 233569999999999999994 2455899999864
No 14
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.6e-14 Score=87.63 Aligned_cols=48 Identities=19% Similarity=0.526 Sum_probs=40.9
Q ss_pred CcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
.+...|+||++.+..+ ..++|||.||..||.+|++..+.+||+||+++
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESI 60 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCC
T ss_pred CcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCC
Confidence 4667899999999876 34799999999999999965566899999875
No 15
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.6e-14 Score=91.06 Aligned_cols=49 Identities=22% Similarity=0.619 Sum_probs=40.9
Q ss_pred CCCcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 100 SCSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 100 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
.......|+||++.+..+ ..++|+|.||..||.+|++. ..+||+||+++
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~ 59 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRA-TPRCYICDQPT 59 (81)
T ss_dssp CCCCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHH-CSBCSSSCCBC
T ss_pred cCCCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHC-CCcCCCcCccc
Confidence 344667899999998765 55799999999999999974 55999999874
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=3.6e-14 Score=88.52 Aligned_cols=49 Identities=20% Similarity=0.653 Sum_probs=40.8
Q ss_pred CCCcccccccccccccCCCceEee-cCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 100 SCSAAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 100 ~~~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
.......|+||++.+..+ +.+ +|+|.||..||.+|++. +.+||+||+++
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~ 60 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYY-SNRCPKCNIVV 60 (72)
T ss_dssp CCCGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHH-CSSCTTTCCCC
T ss_pred hcCCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHc-CCcCCCcCccc
Confidence 344677899999998875 455 99999999999999974 55999999875
No 17
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.47 E-value=1.5e-14 Score=87.78 Aligned_cols=49 Identities=29% Similarity=0.724 Sum_probs=40.7
Q ss_pred cccccccccccccCC----CceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSD----EEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~----~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
+..+|+||++.+..+ +.+..++|||.||..|+.+|++. +.+||+||+++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~ 54 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKI 54 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccC
Confidence 456899999998764 44466799999999999999984 55999999874
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=5.1e-14 Score=90.69 Aligned_cols=53 Identities=28% Similarity=0.713 Sum_probs=43.2
Q ss_pred CCCcccccccccccccCCCc-eEeecCCCcccHhhHHHHhcCC--CCcccCCCCCC
Q 039522 100 SCSAAMECCVCLSRFQSDEE-VSELSCKHFFHRGCLDKWFDNK--HSTCPLCRSIL 152 (152)
Q Consensus 100 ~~~~~~~C~ICl~~~~~~~~-~~~l~C~H~fh~~Ci~~wl~~~--~~~CP~Cr~~~ 152 (152)
...+..+|+||++.|...+. .+.++|||.||..|+.+|++.. ..+||+||+++
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKIT 66 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCB
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcc
Confidence 34466789999999988654 5667999999999999999754 46899999863
No 19
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.47 E-value=4.2e-14 Score=94.89 Aligned_cols=49 Identities=24% Similarity=0.604 Sum_probs=40.0
Q ss_pred cccccccccccccCCC---------------ceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDE---------------EVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~---------------~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
.+..|+||++.|.... .++.++|+|.||..||.+|+.. +.+||+||+++
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcc
Confidence 4567999999987651 2455699999999999999984 56999999863
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.45 E-value=7.1e-14 Score=87.69 Aligned_cols=49 Identities=16% Similarity=0.498 Sum_probs=40.7
Q ss_pred CCCcccccccccccccCCCceEeec-CCCcccHhhHHHHhcCC-CCcccCCCCC
Q 039522 100 SCSAAMECCVCLSRFQSDEEVSELS-CKHFFHRGCLDKWFDNK-HSTCPLCRSI 151 (152)
Q Consensus 100 ~~~~~~~C~ICl~~~~~~~~~~~l~-C~H~fh~~Ci~~wl~~~-~~~CP~Cr~~ 151 (152)
.......|+||++.|..+ +.++ |||.||..||.+|++.. ..+||+||++
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~ 61 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQN 61 (74)
T ss_dssp CSCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCS
T ss_pred cCCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCc
Confidence 344678899999999876 5688 99999999999999743 3589999986
No 21
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.44 E-value=7.7e-14 Score=88.15 Aligned_cols=48 Identities=25% Similarity=0.572 Sum_probs=41.5
Q ss_pred CcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
.....|+||++.|..+ +.++|||.||+.||.+|++.++.+||+||+++
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~ 53 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETL 53 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBC
T ss_pred cccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCC
Confidence 4677899999999876 56799999999999999986577999999864
No 22
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.3e-14 Score=88.75 Aligned_cols=46 Identities=39% Similarity=1.042 Sum_probs=39.5
Q ss_pred CcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
.....|+||++.+.. ..++|+|.||..|+.+|++ ++.+||+||+++
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~ 58 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSD-RHRNCPICRLQM 58 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSC-CCSSCHHHHHCT
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHH-CcCcCCCcCCcc
Confidence 456789999999876 5679999999999999998 566999999764
No 23
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=9.6e-14 Score=88.62 Aligned_cols=50 Identities=26% Similarity=0.739 Sum_probs=40.9
Q ss_pred CcccccccccccccCCCceEeecCC-----CcccHhhHHHHhcCCC-CcccCCCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSELSCK-----HFFHRGCLDKWFDNKH-STCPLCRSIL 152 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l~C~-----H~fh~~Ci~~wl~~~~-~~CP~Cr~~~ 152 (152)
.....|.||++++..++.+ .+||+ |.||..||.+|+...+ .+||+||.++
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~ 68 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBC
T ss_pred CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCee
Confidence 3567899999999877665 47996 9999999999997533 5899999864
No 24
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.2e-13 Score=82.68 Aligned_cols=46 Identities=26% Similarity=0.634 Sum_probs=38.2
Q ss_pred CCCcccccccccccccCCCceEeecCCCcccHhhHHHHhcC--CCCcccCC
Q 039522 100 SCSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDN--KHSTCPLC 148 (152)
Q Consensus 100 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~--~~~~CP~C 148 (152)
...+...|+||++.+..+ +.++|||.||..||.+|++. .+.+||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345677899999999875 56799999999999999973 34589998
No 25
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.42 E-value=1.2e-13 Score=84.33 Aligned_cols=49 Identities=22% Similarity=0.525 Sum_probs=40.3
Q ss_pred ccccccccc-cccCCCce-EeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 104 AMECCVCLS-RFQSDEEV-SELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 104 ~~~C~ICl~-~~~~~~~~-~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
+..|+||++ .+..+... ..++|||.||..||.+|+..++..||+||+++
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 53 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcc
Confidence 467999999 78777543 34599999999999999876666899999865
No 26
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.42 E-value=6.3e-14 Score=86.25 Aligned_cols=47 Identities=32% Similarity=0.781 Sum_probs=39.1
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
...+|+||++.+..+ +..++|||.||..|+.+|++. +.+||+||+++
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~ 50 (68)
T 1chc_A 4 VAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPV 50 (68)
T ss_dssp CCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHH-SCSTTTTCCCC
T ss_pred CCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhC-cCcCcCCChhh
Confidence 456899999998653 356799999999999999974 45999999864
No 27
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=3.7e-13 Score=85.82 Aligned_cols=49 Identities=24% Similarity=0.725 Sum_probs=41.1
Q ss_pred CCcccccccccccccCCCceEeecCCCcccHhhHHHHhcCC-----CCcccCCCCCC
Q 039522 101 CSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNK-----HSTCPLCRSIL 152 (152)
Q Consensus 101 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~-----~~~CP~Cr~~~ 152 (152)
......|+||++.+..+ ..++|+|.||..|+..|+... ...||+||.++
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred CccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 34667899999998776 467999999999999999752 56899999864
No 28
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.40 E-value=7.7e-14 Score=88.18 Aligned_cols=49 Identities=24% Similarity=0.610 Sum_probs=40.9
Q ss_pred CCcccccccccccccCCCceEeecCCCcccHhhHHHHhcCC------CCcccCCCCCC
Q 039522 101 CSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNK------HSTCPLCRSIL 152 (152)
Q Consensus 101 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~------~~~CP~Cr~~~ 152 (152)
..+...|+||++.+..+ +.++|||.||..|+.+|++.. ...||+||.++
T Consensus 9 ~~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred cccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 34678899999999876 447999999999999999752 56899999864
No 29
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.40 E-value=9.5e-14 Score=97.11 Aligned_cols=46 Identities=28% Similarity=0.871 Sum_probs=39.2
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
.+..|+||++.|..+ +.++|||.||..||..|+.. +.+||+||+++
T Consensus 52 ~~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~ 97 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKR-KIECPICRKDI 97 (138)
T ss_dssp HHSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTT-CSBCTTTCCBC
T ss_pred ccCCCcccCcccCCc---eECCCCCCccHHHHHHHHHc-CCcCCCCCCcC
Confidence 345799999998765 66799999999999999984 55999999875
No 30
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=3.9e-13 Score=79.98 Aligned_cols=45 Identities=27% Similarity=0.919 Sum_probs=37.5
Q ss_pred CCcccccccccccccCCCceEeecCCCcccHhhHHHHhcC--CCCcccCC
Q 039522 101 CSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDN--KHSTCPLC 148 (152)
Q Consensus 101 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~--~~~~CP~C 148 (152)
..+...|+||++.+..+ +.++|+|.||..||.+|++. ++.+||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34667899999999876 45799999999999999754 45689998
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.39 E-value=9.8e-14 Score=91.99 Aligned_cols=47 Identities=21% Similarity=0.805 Sum_probs=40.1
Q ss_pred cccccccccccccCCCceEe-ecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSE-LSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~-l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
+...|+||++.|..+ +. ++|||.||..||.+|+...+..||+||+++
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 68 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPL 68 (100)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcC
Confidence 456799999999765 55 799999999999999986546999999874
No 32
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.37 E-value=4.8e-13 Score=87.03 Aligned_cols=50 Identities=16% Similarity=0.464 Sum_probs=41.3
Q ss_pred CCCcccccccccccccCCCceEeec-CCCcccHhhHHHHhcC-CCCcccCCCCCC
Q 039522 100 SCSAAMECCVCLSRFQSDEEVSELS-CKHFFHRGCLDKWFDN-KHSTCPLCRSIL 152 (152)
Q Consensus 100 ~~~~~~~C~ICl~~~~~~~~~~~l~-C~H~fh~~Ci~~wl~~-~~~~CP~Cr~~~ 152 (152)
.......|+||++.|..+ +.++ |||.||..||..|+.. ++..||+||.++
T Consensus 9 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 344678899999999876 6678 9999999999999963 335899999863
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=7.3e-13 Score=84.45 Aligned_cols=49 Identities=29% Similarity=0.689 Sum_probs=40.6
Q ss_pred CCcccccccccccccCCCceEeecCCCcccHhhHHHHhcC-----CCCcccCCCCCC
Q 039522 101 CSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDN-----KHSTCPLCRSIL 152 (152)
Q Consensus 101 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~-----~~~~CP~Cr~~~ 152 (152)
......|+||++.+..+ ..++|+|.||..|+..|++. +...||+||+++
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISY 69 (85)
T ss_dssp CCCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSS
T ss_pred ccCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCcc
Confidence 34667899999998775 45699999999999999974 256899999864
No 34
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.35 E-value=3.1e-13 Score=92.73 Aligned_cols=47 Identities=28% Similarity=0.629 Sum_probs=40.4
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
....|+||++.|..+ +.++|||.||..||..|+..+...||+||+++
T Consensus 51 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDL 97 (124)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred cCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccC
Confidence 456799999999875 66799999999999999985566999999864
No 35
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.34 E-value=2.2e-13 Score=92.26 Aligned_cols=49 Identities=20% Similarity=0.638 Sum_probs=41.9
Q ss_pred CCcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 101 CSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 101 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
..++..|+||++.+..+ +.++|||.||..||.+|+..++..||+||.++
T Consensus 12 ~~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 12 SLSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp CHHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred CCCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 34567899999998876 66799999999999999986567999999864
No 36
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.34 E-value=1.1e-13 Score=94.36 Aligned_cols=48 Identities=25% Similarity=0.621 Sum_probs=0.9
Q ss_pred cccccccccccccCCC---------------ceEeecCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 103 AAMECCVCLSRFQSDE---------------EVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~---------------~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
.+..|+||++.|..+. .+..++|+|.||..||.+|++. +.+||+||++
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~ 109 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNRE 109 (117)
T ss_dssp CC--------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCe
Confidence 4468999999997531 2223489999999999999985 5599999986
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.33 E-value=6.2e-13 Score=91.43 Aligned_cols=49 Identities=27% Similarity=0.720 Sum_probs=41.1
Q ss_pred cccccccccccccCC----CceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSD----EEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~----~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
+..+|+||++.|..+ +.++.++|||.||..||.+|++. +.+||+||+++
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~ 58 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKI 58 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcC
Confidence 567899999999765 44567799999999999999984 45999999864
No 38
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=1.5e-12 Score=81.73 Aligned_cols=51 Identities=24% Similarity=0.554 Sum_probs=40.7
Q ss_pred CCCcccccccccccccCCCceEeecCCCcccHhhHHHHhcCC-CCcccCCCCCC
Q 039522 100 SCSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNK-HSTCPLCRSIL 152 (152)
Q Consensus 100 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~-~~~CP~Cr~~~ 152 (152)
..+...+|+||.+.+..++.. ..|+|.||..||.+||+.+ +.+||+||++.
T Consensus 11 y~~~i~~C~IC~~~i~~g~~C--~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w 62 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62 (74)
T ss_dssp CSSSSCBCSSSCCBCSSSEEC--SSSCCEECHHHHHHHSTTCSSCCCTTTCSCC
T ss_pred ccCCCCcCcchhhHcccCCcc--CCCCchhhHHHHHHHHHhcCCCCCCCCcCcC
Confidence 344667899999999876432 3899999999999999754 25899999863
No 39
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.31 E-value=2.1e-12 Score=82.01 Aligned_cols=51 Identities=22% Similarity=0.519 Sum_probs=39.8
Q ss_pred CcccccccccccccCCCceE-eecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVS-ELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~-~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
.++.+|+||++.+...+... .++|||.||..|+..++...+..||.||+++
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~ 60 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 60 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBC
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCcc
Confidence 46678999999986543322 1359999999999999865667899999864
No 40
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.31 E-value=8.8e-13 Score=86.97 Aligned_cols=46 Identities=22% Similarity=0.689 Sum_probs=38.8
Q ss_pred cccccccccccccCCCceEee-cCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
+...|+||++.+..+ +.+ +|||.||..||.+|+. .+.+||+||+++
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~ 67 (99)
T 2y43_A 21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTV 67 (99)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHT-TCCBCTTTCCBC
T ss_pred CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHH-CCCCCCCCCCcC
Confidence 446799999998875 555 8999999999999998 455999999864
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.31 E-value=1.2e-12 Score=93.98 Aligned_cols=48 Identities=25% Similarity=0.642 Sum_probs=40.9
Q ss_pred CcccccccccccccCCCceEee-cCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
.....|+||++.|..+ +.+ +|||.||..||.+|+..++..||+||.++
T Consensus 52 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 52 HSELMCPICLDMLKNT---MTTKECLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp HHHHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 4567899999999874 555 99999999999999986577899999864
No 42
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.29 E-value=1.7e-12 Score=86.99 Aligned_cols=46 Identities=22% Similarity=0.741 Sum_probs=39.2
Q ss_pred cccccccccccccCCCceEee-cCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
....|+||++.+..+ ..+ +|||.||..||..|+.. +..||+||.++
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~ 60 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLET-SKYCPICDVQV 60 (108)
T ss_dssp GGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBS
T ss_pred CcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHh-CCcCcCCCccc
Confidence 556899999998765 556 99999999999999984 46999999864
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.28 E-value=1.5e-12 Score=92.38 Aligned_cols=47 Identities=26% Similarity=0.593 Sum_probs=40.5
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
....|+||++.|..+ +.++|||.||..||..|+..+...||+||.++
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 123 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDL 123 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred cCCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccC
Confidence 456899999998776 55799999999999999986556899999875
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.26 E-value=2e-12 Score=88.03 Aligned_cols=48 Identities=27% Similarity=0.641 Sum_probs=41.0
Q ss_pred CcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
.+...|+||++.+..+ +.++|||.||..||.+|+...+.+||+||.++
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 63 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL 63 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCc
Confidence 4667899999998876 55799999999999999986555999999875
No 45
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.24 E-value=2.9e-12 Score=86.00 Aligned_cols=47 Identities=32% Similarity=0.803 Sum_probs=38.6
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCCC--CcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKH--STCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~--~~CP~Cr~~~ 152 (152)
....|+||++.+..+ ..++|||.||..||..|+..+. .+||+||.++
T Consensus 20 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 68 (112)
T 1jm7_A 20 KILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68 (112)
T ss_dssp HHTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCC
T ss_pred CCCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcC
Confidence 345799999998776 4479999999999999997432 4899999864
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.23 E-value=3e-12 Score=86.73 Aligned_cols=47 Identities=32% Similarity=0.655 Sum_probs=40.1
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
+...|+||++.+..+ +.++|||.||..||.+|+...+.+||+||.++
T Consensus 22 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 68 (116)
T 1rmd_A 22 KSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPC 68 (116)
T ss_dssp HHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCC
Confidence 456799999998765 55799999999999999986566899999864
No 47
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.23 E-value=1.8e-11 Score=80.87 Aligned_cols=48 Identities=15% Similarity=0.093 Sum_probs=41.6
Q ss_pred CCcccccccccccccCCCceEeecCC-CcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 101 CSAAMECCVCLSRFQSDEEVSELSCK-HFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 101 ~~~~~~C~ICl~~~~~~~~~~~l~C~-H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
......|+||++.|..+ +.++|| |.|++.||.+|+.. +.+||+||.++
T Consensus 19 ~p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l 67 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPL 67 (98)
T ss_dssp CCTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBC
T ss_pred CcHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHh-CCCCCCCCCCC
Confidence 34678899999999887 668999 99999999999984 56999999875
No 48
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.22 E-value=1.1e-11 Score=79.84 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=41.6
Q ss_pred CCcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 101 CSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 101 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
......|+||++.|..+ +.++|||.|++.||.+|+. ++.+||+||.++
T Consensus 11 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l 58 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLL-NSPTDPFNRQML 58 (85)
T ss_dssp CCTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHH-HCSBCTTTCCBC
T ss_pred CchheECcccCchhcCC---eECCCCCEECHHHHHHHHh-cCCCCCCCcCCC
Confidence 34678899999999887 6679999999999999998 466999999864
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.19 E-value=7.9e-12 Score=85.82 Aligned_cols=49 Identities=27% Similarity=0.720 Sum_probs=40.5
Q ss_pred cccccccccccccCC----CceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSD----EEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~----~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
....|+||++.+..+ ...+.++|||.||..||.+|++. +.+||+||+++
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~ 123 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKI 123 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcC
Confidence 567899999998763 33456799999999999999984 45999999875
No 50
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.19 E-value=2.6e-11 Score=80.35 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=41.5
Q ss_pred CcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
.....|+||++.|..+ +.++|||.|++.||.+|+. .+.+||+||.++
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l 73 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLL-NSPTDPFNRQTL 73 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTT-SCSBCSSSCCBC
T ss_pred cHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHH-cCCCCCCCCCCC
Confidence 4678899999999887 7789999999999999998 467999999875
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.18 E-value=9.5e-12 Score=75.93 Aligned_cols=47 Identities=23% Similarity=0.555 Sum_probs=38.2
Q ss_pred CcccccccccccccCCCceEee--cCCCc-ccHhhHHHHhcCCCCcccCCCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSEL--SCKHF-FHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l--~C~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
+++.+|.||++...+. ..+ ||||. |+..|+.+|.+ .+..||+||+++
T Consensus 6 ~~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i 55 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPI 55 (64)
T ss_dssp GGGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHH-TTCCCTTTCCCC
T ss_pred CCcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHH-cCCcCCCcCcch
Confidence 3566899999986554 444 99999 89999999997 455899999975
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.17 E-value=3.7e-12 Score=89.48 Aligned_cols=47 Identities=19% Similarity=0.453 Sum_probs=40.6
Q ss_pred CcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
.....|+||++.+..+ +.++|||.||..||.+|++.+..+||+||.+
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~ 75 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHE 75 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHT
T ss_pred CcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCc
Confidence 3667899999999877 5579999999999999998666689999975
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.14 E-value=8.2e-12 Score=74.16 Aligned_cols=44 Identities=25% Similarity=0.621 Sum_probs=36.8
Q ss_pred CcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
.+...|+||++.+..+ +.++|+|.||..|+.+| ...||+||+++
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~ 47 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS----GMQCPICQAPW 47 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS----SSSCSSCCSSS
T ss_pred ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC----CCCCCcCCcEe
Confidence 3567899999999876 56799999999999874 34899999864
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.13 E-value=7e-11 Score=95.04 Aligned_cols=46 Identities=24% Similarity=0.668 Sum_probs=39.0
Q ss_pred ccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 104 AMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
..+|+||++.+..+ +.++|||.||..|+..|+...+.+||+||+++
T Consensus 332 ~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i 377 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377 (389)
T ss_dssp SSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCcc
Confidence 36899999998654 66799999999999999974456999999875
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.12 E-value=2.8e-11 Score=73.57 Aligned_cols=46 Identities=17% Similarity=0.482 Sum_probs=37.4
Q ss_pred cccccccccccccCCCceEee--cCCCc-ccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSEL--SCKHF-FHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l--~C~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
....|.||++...+. ..+ ||||. ||..|+.+|.+. +..||+||+++
T Consensus 6 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i 54 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEI 54 (63)
T ss_dssp GGSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBC
T ss_pred cCCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchh
Confidence 556899999976543 344 99998 999999999874 45899999975
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.08 E-value=1.9e-11 Score=82.95 Aligned_cols=44 Identities=23% Similarity=0.697 Sum_probs=37.9
Q ss_pred cccccccccccccCCCceEee-cCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
....|+||++.|..+ +.+ +|||.||..||..|+. ..||+||.++
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~ 65 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG---TGCPVCYTPA 65 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT---TBCSSSCCBC
T ss_pred hCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc---CCCcCCCCcC
Confidence 446799999999876 566 9999999999999986 5899999864
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.06 E-value=9.3e-11 Score=89.74 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=41.9
Q ss_pred CCcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 101 CSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 101 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
......|+||++.|..+ +.++|||.||+.||.+|+..++.+||+||.++
T Consensus 205 ~~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~ 253 (281)
T 2c2l_A 205 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPL 253 (281)
T ss_dssp CCSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCC
T ss_pred CCcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCC
Confidence 34677899999999887 67899999999999999975555699999875
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.06 E-value=3.5e-11 Score=75.35 Aligned_cols=42 Identities=21% Similarity=0.658 Sum_probs=35.4
Q ss_pred cccccccccccccCCCceEeecCCCc-ccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHF-FHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
+...|+||++.+... ..++|||. ||..|+..| ..||+||+++
T Consensus 23 ~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i 65 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV-----DKCPMCYTVI 65 (74)
T ss_dssp HHTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC-----SBCTTTCCBC
T ss_pred cCCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC-----ccCCCcCcCc
Confidence 345799999987654 66799999 999999998 4899999875
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.04 E-value=7.8e-11 Score=84.73 Aligned_cols=48 Identities=27% Similarity=0.641 Sum_probs=41.2
Q ss_pred CcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
.+...|+||++.+..+ +.++|||.||..||.+|+..++.+||+||.++
T Consensus 16 ~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 63 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL 63 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCc
Confidence 4667899999999876 55799999999999999975555999999864
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=4.3e-10 Score=69.35 Aligned_cols=45 Identities=29% Similarity=0.735 Sum_probs=35.6
Q ss_pred CCCcccccccccccccCCCceEeecCCCc-ccHhhHHHHhcCCCCcccCCCCCC
Q 039522 100 SCSAAMECCVCLSRFQSDEEVSELSCKHF-FHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 100 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
.......|.||++.... ++.+||+|. ||..|+.. ...||+||++|
T Consensus 11 ~~~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i 56 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY-----FQQCPMCRQFV 56 (68)
T ss_dssp SCCCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH-----CSSCTTTCCCC
T ss_pred cCCCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc-----CCCCCCCCcch
Confidence 33456789999998654 466799999 99999984 24899999875
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=3.1e-10 Score=74.20 Aligned_cols=47 Identities=15% Similarity=0.511 Sum_probs=38.7
Q ss_pred CcccccccccccccCCCceEeec-CCCcccHhhHHHHhcCC-----CCcccC--CCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSELS-CKHFFHRGCLDKWFDNK-----HSTCPL--CRSI 151 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l~-C~H~fh~~Ci~~wl~~~-----~~~CP~--Cr~~ 151 (152)
.....|+||++.|..+ +.++ |||.|++.||.+|+... ..+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3567899999999886 6675 99999999999999742 358999 8743
No 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.96 E-value=1.3e-10 Score=91.65 Aligned_cols=53 Identities=26% Similarity=0.703 Sum_probs=40.1
Q ss_pred CCCcccccccccccccCCCceE-----eecCCCcccHhhHHHHhcCCC----------CcccCCCCCC
Q 039522 100 SCSAAMECCVCLSRFQSDEEVS-----ELSCKHFFHRGCLDKWFDNKH----------STCPLCRSIL 152 (152)
Q Consensus 100 ~~~~~~~C~ICl~~~~~~~~~~-----~l~C~H~fh~~Ci~~wl~~~~----------~~CP~Cr~~~ 152 (152)
..+...+|+||++.+.....+. ..+|+|.||..|+.+|++... .+||.||++|
T Consensus 304 ~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pI 371 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL 371 (381)
T ss_dssp CCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEE
T ss_pred cccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcC
Confidence 3456788999999988733222 237999999999999996421 3699999874
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.92 E-value=6.5e-10 Score=80.80 Aligned_cols=48 Identities=10% Similarity=0.095 Sum_probs=41.2
Q ss_pred CcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
.....|+||++.|..+ +.++|||.|++.||..|+...+.+||+||.++
T Consensus 104 p~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l 151 (179)
T 2f42_A 104 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPL 151 (179)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred cHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCC
Confidence 4778899999999886 66799999999999999975444799999875
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=4.2e-10 Score=70.48 Aligned_cols=41 Identities=22% Similarity=0.674 Sum_probs=33.4
Q ss_pred ccccccccccccCCCceEeecCCCc-ccHhhHHHHhcCCCCcccCCCCCC
Q 039522 104 AMECCVCLSRFQSDEEVSELSCKHF-FHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l~C~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
...|+||++.+..+ ..++|||. ||..|+.+. ..||+||+++
T Consensus 25 ~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i 66 (75)
T 2ecg_A 25 EKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV-----DKCPMCYTVI 66 (75)
T ss_dssp HHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHHC-----SBCTTTCCBC
T ss_pred CCCCCcCCCCCCCE---EEecCCCHHHHHHHhhCC-----CCCccCCcee
Confidence 45799999987664 55799999 999999652 4899999875
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.84 E-value=9.5e-10 Score=71.69 Aligned_cols=49 Identities=20% Similarity=0.602 Sum_probs=38.3
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcC-------CCCcccC--CCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDN-------KHSTCPL--CRSI 151 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~-------~~~~CP~--Cr~~ 151 (152)
...+|+||++.+..++.+...+|+|.||..|+..+++. ....||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45689999999877644443479999999999999853 1347999 9875
No 66
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.83 E-value=2.4e-09 Score=64.38 Aligned_cols=47 Identities=23% Similarity=0.681 Sum_probs=35.7
Q ss_pred cccccccccccccCCCceEeecCC--C---cccHhhHHHHhcC-CCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCK--H---FFHRGCLDKWFDN-KHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~--H---~fh~~Ci~~wl~~-~~~~CP~Cr~~~ 152 (152)
+...|.||+++... .. .+||. + .||..|+.+|+.. ++.+||+||.++
T Consensus 5 ~~~~CrIC~~~~~~--~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 5 DVPVCWICNEELGN--ER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57 (60)
T ss_dssp SCCEETTTTEECSC--CC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCEeEEeecCCCC--ce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCee
Confidence 55689999998432 22 46754 4 9999999999964 456899999864
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.79 E-value=1.1e-09 Score=69.45 Aligned_cols=41 Identities=32% Similarity=0.677 Sum_probs=33.8
Q ss_pred ccccccccccccCCCceEeecCCCc-ccHhhHHHHhcCCCCcccCCCCCC
Q 039522 104 AMECCVCLSRFQSDEEVSELSCKHF-FHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l~C~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
...|+||++.+.. +..+||||. ||..|+..| ..||+||+++
T Consensus 18 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i 59 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL-----QSCPVCRSRV 59 (79)
T ss_dssp HTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC-----SBCTTTCCBC
T ss_pred CCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc-----CcCCCCCchh
Confidence 3579999998655 366799999 999999876 2899999875
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.70 E-value=1.1e-08 Score=78.14 Aligned_cols=49 Identities=16% Similarity=0.572 Sum_probs=39.6
Q ss_pred CCcccccccccccccCCCceEeecCCCcccHhhHHHHhcCC-CCcccC--CCCC
Q 039522 101 CSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNK-HSTCPL--CRSI 151 (152)
Q Consensus 101 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~-~~~CP~--Cr~~ 151 (152)
......||||++.|..+ |+...|||.|++.||..|+..+ ..+||+ ||+.
T Consensus 178 ~~~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~ 229 (267)
T 3htk_C 178 GKIELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQV 229 (267)
T ss_dssp SBCCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCE
T ss_pred CceeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCc
Confidence 34667899999999887 3334899999999999999743 358999 9975
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.64 E-value=5.9e-09 Score=82.94 Aligned_cols=42 Identities=29% Similarity=0.731 Sum_probs=35.9
Q ss_pred cccccccccccccCCCceEeecCCCc-ccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHF-FHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
++..|+||++.+..+ ..++|||. ||..|+..| ..||+||+++
T Consensus 294 ~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i 336 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL-----RKCPICRGII 336 (345)
T ss_dssp TTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC-----SBCTTTCCBC
T ss_pred CCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC-----CcCCCCCCCc
Confidence 456899999998664 66799999 999999987 4899999875
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.54 E-value=2.4e-08 Score=60.10 Aligned_cols=44 Identities=14% Similarity=0.291 Sum_probs=37.9
Q ss_pred cccccccccccCCCceEee-cCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 105 MECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 105 ~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
..|+|+++.+.++ +.+ ++||.|.+.||.+|++. +.+||+.+.++
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L 48 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPL 48 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBC
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCC
Confidence 5799999999876 667 89999999999999984 45899999865
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.52 E-value=7.2e-08 Score=63.03 Aligned_cols=45 Identities=22% Similarity=0.398 Sum_probs=36.7
Q ss_pred ccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 106 ECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 106 ~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
.|.+|--++.. ..+.+||.|+||.+|+..|.+.+..+||.|+.+|
T Consensus 3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPV 47 (101)
T ss_dssp BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCee
Confidence 47888777654 3466799999999999999876677999999875
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.02 E-value=2.7e-06 Score=64.36 Aligned_cols=47 Identities=26% Similarity=0.617 Sum_probs=37.5
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCC-CCcccCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNK-HSTCPLCRSI 151 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~-~~~CP~Cr~~ 151 (152)
...+|.||.+-+..+.. .-.|+|.||..|+.+|++.+ +..||.|+.+
T Consensus 179 ~i~~C~iC~~iv~~g~~--C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~ 226 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQS--CETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 226 (238)
T ss_dssp TCCBCTTTCSBCSSCEE--CSSSCCEECHHHHHHHTTTCSSCBCTTTCCB
T ss_pred CCCcCcchhhHHhCCcc--cCccChHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 46789999999887622 22599999999999999753 4589999874
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.94 E-value=0.0044 Score=40.00 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=26.3
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHH
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKW 137 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~w 137 (152)
++..|.||.+.+..+.....+.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 34679999986544434344799999999999983
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.51 E-value=0.014 Score=35.16 Aligned_cols=45 Identities=20% Similarity=0.387 Sum_probs=31.6
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCC---CCcccCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNK---HSTCPLCRS 150 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~---~~~CP~Cr~ 150 (152)
....|.||.+. ++.+..-.|...||..|+...+... .-.||.|++
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 45679999753 3332222899999999998877542 236999975
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.02 E-value=0.033 Score=35.72 Aligned_cols=44 Identities=23% Similarity=0.625 Sum_probs=33.5
Q ss_pred cccccccccccccCCCceEeecC-CCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSC-KHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C-~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
+-..|-.|+..... .+.| .|.+|..|+...+.... .||+|+.+|
T Consensus 27 G~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~Sd-rCpIC~~pL 71 (99)
T 2ko5_A 27 GPQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSN-RCPICKMPL 71 (99)
T ss_dssp CCCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSS-EETTTTEEC
T ss_pred CcccChhhccccCC-----eeeecchhhHHHHHHHHHhhcc-CCcccCCcC
Confidence 45679999877442 2356 79999999999987444 899998764
No 76
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=93.64 E-value=0.24 Score=31.35 Aligned_cols=50 Identities=16% Similarity=0.313 Sum_probs=37.0
Q ss_pred cccccccccccccCCC---ceEe-ecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDE---EVSE-LSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~---~~~~-l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
....|.||-+++.... ..+. -.|+--.|+.|.+-=.+..+..||.|++++
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcc
Confidence 4468999999864332 2222 268889999999987777788999998753
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=91.76 E-value=0.22 Score=31.24 Aligned_cols=36 Identities=25% Similarity=0.569 Sum_probs=24.5
Q ss_pred CCcccccccccccccCCCceEeecCCCcccHhhHHHH
Q 039522 101 CSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKW 137 (152)
Q Consensus 101 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~w 137 (152)
...+..|.||-. +...+....=-|+-+||..|+.+-
T Consensus 12 ~~~D~~C~VC~~-~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEV-WTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCC-CCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCcccc-ccccceeccccccccccHhhcccc
Confidence 346678999953 334433222258999999999996
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=91.47 E-value=0.12 Score=30.31 Aligned_cols=47 Identities=26% Similarity=0.515 Sum_probs=31.5
Q ss_pred CCcccccccccccccCCCceEeecCCCcccHhhHHHHhcC---CCCcccCCCC
Q 039522 101 CSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDN---KHSTCPLCRS 150 (152)
Q Consensus 101 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~ 150 (152)
...+..|.+|... ++.+..-.|...||..|+..-+.. +.-.||.|+.
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3456779999863 322222289999999999875432 2336999965
No 79
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=91.41 E-value=0.06 Score=31.65 Aligned_cols=47 Identities=23% Similarity=0.435 Sum_probs=30.9
Q ss_pred CcccccccccccccCCCceEeecCCCcccHhhHHHHhcC---CCCcccCCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDN---KHSTCPLCRSI 151 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~~ 151 (152)
..+..|.||.+. ++.+..-.|...||..|+..-+.. ..-.||.|+..
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 356679999753 332222279999999999864432 22369999753
No 80
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=90.67 E-value=0.04 Score=32.58 Aligned_cols=48 Identities=25% Similarity=0.525 Sum_probs=32.5
Q ss_pred cccccccccccccCCCceEee-cCCCcccHhhHHHHhc----CCCCcccCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFD----NKHSTCPLCRS 150 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~----~~~~~CP~Cr~ 150 (152)
+...|+||...+......+.- .|..=||..|+.--.. .....||.|+.
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 556799999887654443333 7889999999864321 13457999864
No 81
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.10 E-value=0.032 Score=32.22 Aligned_cols=46 Identities=24% Similarity=0.535 Sum_probs=30.3
Q ss_pred CcccccccccccccCCCceEeecCCCcccHhhHHHHhcC---CCCcccCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDN---KHSTCPLCRS 150 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~ 150 (152)
..+..|.||... ++.+..-.|...||..|+..-+.. ..-.||.|+.
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 356679999874 333332389999999999864432 2225888864
No 82
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=89.99 E-value=0.33 Score=29.83 Aligned_cols=48 Identities=23% Similarity=0.563 Sum_probs=31.0
Q ss_pred CcccccccccccccCCCceEee-cCCCcccHhhHHHHh----cCCCCcccCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWF----DNKHSTCPLCRS 150 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl----~~~~~~CP~Cr~ 150 (152)
.....| ||..........+.- .|..=||..|+.--- ......||.|+.
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 62 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEA 62 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTT
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccc
Confidence 344556 998887544333333 789999999985211 123457999975
No 83
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.94 E-value=0.17 Score=28.31 Aligned_cols=45 Identities=27% Similarity=0.545 Sum_probs=28.8
Q ss_pred ccccccccccCCCceEeecCCCcccHhhHHHHhcC---CCCcccCCCC
Q 039522 106 ECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDN---KHSTCPLCRS 150 (152)
Q Consensus 106 ~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~ 150 (152)
.|.||...-..++.+.--.|...||..|+..=+.. +.-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48888765333323222289999999999754432 2236999975
No 84
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=89.80 E-value=0.12 Score=33.84 Aligned_cols=37 Identities=24% Similarity=0.426 Sum_probs=26.0
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhc
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFD 139 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~ 139 (152)
.+..|.||.+.-+..+.+.--.|+..||..|+...+.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 5668999987633222233348999999999987654
No 85
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=89.52 E-value=0.79 Score=28.49 Aligned_cols=40 Identities=20% Similarity=0.305 Sum_probs=29.0
Q ss_pred CCcccccccccccccCCCceEee-cCCCcccHhhHHHHhcC
Q 039522 101 CSAAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFDN 140 (152)
Q Consensus 101 ~~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~ 140 (152)
......|.+|.+.++...-+..- .=.|.||..|-...++.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 34667899999998876433211 12799999999988764
No 86
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=88.68 E-value=0.16 Score=32.77 Aligned_cols=47 Identities=15% Similarity=0.362 Sum_probs=30.3
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcC--CCCcccCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDN--KHSTCPLCRS 150 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~--~~~~CP~Cr~ 150 (152)
+...| ||......+..+..=.|..-||..|+..-... ....||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 44567 89877554433222289999999998653221 2347999974
No 87
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.40 E-value=0.25 Score=31.29 Aligned_cols=50 Identities=26% Similarity=0.483 Sum_probs=33.2
Q ss_pred CCCCCcccccccccccccCCCceEeecCCCcccHhhHHHHhcC---CCCcccCCCC
Q 039522 98 STSCSAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDN---KHSTCPLCRS 150 (152)
Q Consensus 98 ~~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~ 150 (152)
......+..|.+|... ++.+..-.|...||..|+.+=+.. +.-.||.|+.
T Consensus 19 ~~~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 19 GTLDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp CSSSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred cccCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 3344566789999864 333322279999999999775542 2236999974
No 88
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=87.75 E-value=0.83 Score=31.46 Aligned_cols=45 Identities=18% Similarity=0.450 Sum_probs=31.2
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhc----------CCCCcccCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFD----------NKHSTCPLCRS 150 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~----------~~~~~CP~Cr~ 150 (152)
.+..|.+|.+. ++.+..=.|...||..|+.+-+. ...-.||.|+.
T Consensus 62 ~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 56779999764 33222228999999999997552 13346999974
No 89
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=87.66 E-value=0.66 Score=28.81 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=29.0
Q ss_pred CCCCCcccccccccccccCCCceEee-cCCCcccHhhHHHH
Q 039522 98 STSCSAAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKW 137 (152)
Q Consensus 98 ~~~~~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~w 137 (152)
..++.+...|.+|...|..-..-..- .||.+||..|....
T Consensus 15 W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 15 WQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred cccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 34455677899999999765432333 79999999997654
No 90
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=87.42 E-value=0.49 Score=29.78 Aligned_cols=35 Identities=23% Similarity=0.477 Sum_probs=25.6
Q ss_pred CcccccccccccccCCCceEee-cCCCcccHhhHHH
Q 039522 102 SAAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDK 136 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~ 136 (152)
.....|.+|...|..-..-..- .||.+||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 3556799999998765432333 7999999999654
No 91
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=87.02 E-value=0.11 Score=37.94 Aligned_cols=44 Identities=23% Similarity=0.487 Sum_probs=30.2
Q ss_pred cccccccccccccCCCceEee-cCCCcccHhhHHHHhcC---CCCcccCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFDN---KHSTCPLCRS 150 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~ 150 (152)
.+..|.+|... ++ +..- .|...||..|+.+-+.. +.-.||.|+.
T Consensus 6 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 53 (207)
T 3u5n_A 6 NEDWCAVCQNG---GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRD 53 (207)
T ss_dssp SCSSBTTTCCC---EE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCCCCCCCC---Cc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeC
Confidence 55679999754 32 2222 79999999999776542 2236999975
No 92
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=87.01 E-value=0.22 Score=30.22 Aligned_cols=48 Identities=17% Similarity=0.397 Sum_probs=32.0
Q ss_pred CcccccccccccccCCCceEee-cCCCcccHhhHHHHhcC---CCCcccCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFDN---KHSTCPLCRS 150 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~ 150 (152)
.+...|.||..... +..++.- .|..-||..|+..-... ..-.||.|+.
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccC
Confidence 35566999987753 3333333 79999999999754432 2346999964
No 93
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=86.95 E-value=0.67 Score=30.35 Aligned_cols=33 Identities=27% Similarity=0.488 Sum_probs=21.8
Q ss_pred ccccccccccccc-----CCCceE-eecCCCcccHhhHH
Q 039522 103 AAMECCVCLSRFQ-----SDEEVS-ELSCKHFFHRGCLD 135 (152)
Q Consensus 103 ~~~~C~ICl~~~~-----~~~~~~-~l~C~H~fh~~Ci~ 135 (152)
....|.+|+..=. .++.+. --.|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 4457999987521 122223 23899999999995
No 94
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=86.12 E-value=0.83 Score=28.78 Aligned_cols=39 Identities=21% Similarity=0.403 Sum_probs=27.7
Q ss_pred CCCcccccccccccccCCCceEee-cCCCcccHhhHHHHh
Q 039522 100 SCSAAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWF 138 (152)
Q Consensus 100 ~~~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl 138 (152)
.+.....|.+|...|..-..-..- .||++||..|...+.
T Consensus 16 ~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 16 PDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred ccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 334556799999998765432333 799999999976543
No 95
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.37 E-value=0.84 Score=28.30 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=27.7
Q ss_pred CCCCcccccccccccccCCCceEee-cCCCcccHhhHHHH
Q 039522 99 TSCSAAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKW 137 (152)
Q Consensus 99 ~~~~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~w 137 (152)
.++.....|.+|...|..-..-..- .||.+||..|....
T Consensus 9 ~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 9 YPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred ccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 3445667899999998665332223 79999999996543
No 96
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=85.23 E-value=0.28 Score=30.93 Aligned_cols=48 Identities=19% Similarity=0.528 Sum_probs=30.8
Q ss_pred CcccccccccccccCC-CceEee-cCCCcccHhhHHHHhc-------CCCCcccCCC
Q 039522 102 SAAMECCVCLSRFQSD-EEVSEL-SCKHFFHRGCLDKWFD-------NKHSTCPLCR 149 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~-~~~~~l-~C~H~fh~~Ci~~wl~-------~~~~~CP~Cr 149 (152)
+.+..|.||...-... ..+..- .|...||..|+..-+. ...-.|+.|+
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~ 70 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCT 70 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHH
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCcccc
Confidence 3456799998764332 233333 8999999999876442 1223688775
No 97
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=85.14 E-value=0.43 Score=28.06 Aligned_cols=48 Identities=17% Similarity=0.475 Sum_probs=30.7
Q ss_pred cccccccccccccCCCceEee--cCCCcccHhhHHHHhc------CCCCcccCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSEL--SCKHFFHRGCLDKWFD------NKHSTCPLCRS 150 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l--~C~H~fh~~Ci~~wl~------~~~~~CP~Cr~ 150 (152)
.+..|.||............+ .|...||..|+..-+. ...-.|+.|+.
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 556799999865332222223 8999999999875331 13336887753
No 98
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=84.99 E-value=0.39 Score=28.08 Aligned_cols=43 Identities=19% Similarity=0.441 Sum_probs=28.6
Q ss_pred cccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCC
Q 039522 105 MECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLC 148 (152)
Q Consensus 105 ~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~C 148 (152)
..|-.|...|......+.-.|++.||.+|-.- +...-..||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~f-iHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVF-VHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHT-TTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHH-HHhhccCCcCC
Confidence 35999999885432222337999999999544 22233489988
No 99
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=84.49 E-value=1 Score=40.14 Aligned_cols=47 Identities=15% Similarity=0.100 Sum_probs=39.2
Q ss_pred CcccccccccccccCCCceEeecCC-CcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSELSCK-HFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l~C~-H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
.+...|||-++-+..+ +.++-| +.|-+..|.+|+.. +.+||+=|.++
T Consensus 889 P~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L 936 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLS-DSTDPFNRMPL 936 (968)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBC
T ss_pred cHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCC
Confidence 3667799999998887 778887 68999999999985 56999988764
No 100
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=84.40 E-value=1.3 Score=26.86 Aligned_cols=39 Identities=21% Similarity=0.553 Sum_probs=25.6
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
....|+-|-+.+..++.+.. -+..||..| .+|-.|+.+|
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~C---------F~C~~C~~~L 52 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSC---------FKCQTCSVIL 52 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTT---------CBCSSSCCBC
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCccccccc---------CCcCcCCCCc
Confidence 45679999988876655443 366788766 3566666543
No 101
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.84 E-value=0.55 Score=29.79 Aligned_cols=52 Identities=23% Similarity=0.372 Sum_probs=32.4
Q ss_pred CCCCCCcccccccccccccCCCceEee-cCCCcccHhhHHHHhcC---CCCcccCCC
Q 039522 97 GSTSCSAAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFDN---KHSTCPLCR 149 (152)
Q Consensus 97 ~~~~~~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~---~~~~CP~Cr 149 (152)
+.....+...|.||...-... .++.- .|...||..|+.+=+.. ..-.||.|+
T Consensus 9 s~~~~~~~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~ 64 (92)
T 2e6r_A 9 SSAQFIDSYICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCI 64 (92)
T ss_dssp CCCCCCCCCCCSSSCCSGGGG-GCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHH
T ss_pred chhhccCCCCCccCCCcCCCC-CEEEcCCCCchhccccCCCCcccCCCCCcCCccCc
Confidence 334444666799998764322 23333 79999999999743321 122588885
No 102
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=82.78 E-value=0.89 Score=30.48 Aligned_cols=38 Identities=18% Similarity=0.370 Sum_probs=27.3
Q ss_pred CCCcccccccccccccCCCceEee-cCCCcccHhhHHHH
Q 039522 100 SCSAAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKW 137 (152)
Q Consensus 100 ~~~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~w 137 (152)
++.....|.+|...|..-..-..- .||++||..|....
T Consensus 65 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 65 EDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 334556899999999765432333 79999999997654
No 103
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=82.50 E-value=0.42 Score=31.36 Aligned_cols=45 Identities=24% Similarity=0.536 Sum_probs=29.0
Q ss_pred ccccccccccCCCceEee-cCCCcccHhhHHHHhcC---CCCcccCCCC
Q 039522 106 ECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFDN---KHSTCPLCRS 150 (152)
Q Consensus 106 ~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~ 150 (152)
.|.||...-...+.+..- .|...||..|+.+-+.. +.-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 577887642222333333 79999999999765532 2236999985
No 104
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=82.43 E-value=1.6 Score=29.58 Aligned_cols=44 Identities=18% Similarity=0.475 Sum_probs=29.6
Q ss_pred cccccccccccccCCCceEee-cCCCcccHhhHHHHh------c----CCCCcccCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWF------D----NKHSTCPLCRS 150 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl------~----~~~~~CP~Cr~ 150 (152)
.+..|.||.+. + .+..- .|...||..|+.+-+ + ...=.|++|+.
T Consensus 56 ~~~~C~vC~dG---G-~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCC---S-EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCC---C-eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 55679999764 3 22222 789999999999752 1 12337999964
No 105
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=82.22 E-value=0.85 Score=28.16 Aligned_cols=37 Identities=22% Similarity=0.450 Sum_probs=26.7
Q ss_pred CCcccccccccccccCCCceEee-cCCCcccHhhHHHH
Q 039522 101 CSAAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKW 137 (152)
Q Consensus 101 ~~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~w 137 (152)
+.+...|.+|...|..-..-..- .||.+||..|....
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 34556799999999765332233 79999999997653
No 106
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=82.05 E-value=1.1 Score=26.51 Aligned_cols=34 Identities=26% Similarity=0.702 Sum_probs=24.0
Q ss_pred CcccccccccccccCCCceEee--cCCCcccHhhHH
Q 039522 102 SAAMECCVCLSRFQSDEEVSEL--SCKHFFHRGCLD 135 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l--~C~H~fh~~Ci~ 135 (152)
+....|++|...+...+..+.- .|..-||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 3566799999998766544433 688999999974
No 107
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=82.03 E-value=1.2 Score=26.52 Aligned_cols=28 Identities=32% Similarity=0.433 Sum_probs=17.5
Q ss_pred ccccccccccccCCCceEeecCCCcccHhh
Q 039522 104 AMECCVCLSRFQSDEEVSELSCKHFFHRGC 133 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~C 133 (152)
...|+.|-+.+..++.+. .-+..||..|
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~C 36 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFC 36 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTT
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCC
Confidence 356888888777554433 2466777665
No 108
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=81.16 E-value=3.2 Score=25.46 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=23.3
Q ss_pred CcccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
.....|..|-+.+.. ..+ ..-+..||..| .+|-.|+.+
T Consensus 23 ~~~~~C~~C~~~I~~-~~~--~a~~~~~H~~C---------F~C~~C~~~ 60 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG-AVV--KARDKYRHPEC---------FVCADCNLN 60 (89)
T ss_dssp CSCCBCTTTCCBCCS-CCE--ESSSCEECTTT---------CCCSSSCCC
T ss_pred CcCCCcccCCCEecc-cEE--EECCceECccC---------CEecCCCCC
Confidence 345678888888764 222 23567788766 256666554
No 109
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=80.92 E-value=2.2 Score=26.66 Aligned_cols=48 Identities=15% Similarity=0.366 Sum_probs=29.6
Q ss_pred Cccccccccccccc-CCCceEee-cCCCcccHhhHHHHhc-CCCCcccCCC
Q 039522 102 SAAMECCVCLSRFQ-SDEEVSEL-SCKHFFHRGCLDKWFD-NKHSTCPLCR 149 (152)
Q Consensus 102 ~~~~~C~ICl~~~~-~~~~~~~l-~C~H~fh~~Ci~~wl~-~~~~~CP~Cr 149 (152)
..+..|.||...-. ..+.+..- .|.-.||..|+..-.. .+.-.||.|+
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~ 73 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCL 73 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECcccc
Confidence 45678999987531 22233322 7999999999975321 1223588775
No 110
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=80.58 E-value=0.31 Score=34.34 Aligned_cols=47 Identities=19% Similarity=0.528 Sum_probs=31.0
Q ss_pred cccccccccccccCCCceEee-cCCCcccHhhHHHHh----cCCCCcccCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWF----DNKHSTCPLCRS 150 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl----~~~~~~CP~Cr~ 150 (152)
....| +|......+...+.- .|..-||..|+.--- ......||.|+.
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 55678 999876544333433 789999999985211 123457999964
No 111
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=80.17 E-value=1.6 Score=26.26 Aligned_cols=43 Identities=23% Similarity=0.620 Sum_probs=26.8
Q ss_pred cccccccccccccCCCceEee-c--CC-CcccHhhHHHHhcC---CCCcccCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSEL-S--CK-HFFHRGCLDKWFDN---KHSTCPLCRS 150 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l-~--C~-H~fh~~Ci~~wl~~---~~~~CP~Cr~ 150 (152)
+...| ||..... + .++.- . |. .-||..|+. +.. +.-.||.|+.
T Consensus 15 ~~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~ 64 (71)
T 1wen_A 15 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 64 (71)
T ss_dssp SCCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSS
T ss_pred CCCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCc
Confidence 45567 8987643 3 22222 4 55 589999997 332 2346999975
No 112
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=80.16 E-value=2.3 Score=25.84 Aligned_cols=29 Identities=34% Similarity=0.675 Sum_probs=20.3
Q ss_pred cccccccccccccCCCceEeecCCCcccHhh
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGC 133 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~C 133 (152)
....|+.|-+.+...+.+. .-+..||..|
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~C 42 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSC 42 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTT
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCc
Confidence 4467999999886655543 2467788877
No 113
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.43 E-value=2.9 Score=25.80 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=14.5
Q ss_pred ccccccccccccCCCceEeecCCCcccHhh
Q 039522 104 AMECCVCLSRFQSDEEVSELSCKHFFHRGC 133 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~C 133 (152)
...|+.|-+.+...+.+. .-+..||..|
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~C 42 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL--ANQQVFHISC 42 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE--CSSSEEETTT
T ss_pred CCcCccCCCccCCceeEE--ECCCEECCCC
Confidence 345777766665443322 3345555554
No 114
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=77.30 E-value=2.7 Score=25.22 Aligned_cols=49 Identities=16% Similarity=0.377 Sum_probs=30.6
Q ss_pred Ccccccccccccc-cCCCceEee-cCCCcccHhhHHHHhc-CCCCcccCCCC
Q 039522 102 SAAMECCVCLSRF-QSDEEVSEL-SCKHFFHRGCLDKWFD-NKHSTCPLCRS 150 (152)
Q Consensus 102 ~~~~~C~ICl~~~-~~~~~~~~l-~C~H~fh~~Ci~~wl~-~~~~~CP~Cr~ 150 (152)
..+..|.||.+.- ...+.+..- .|.-.||..|+..-.. .+.-.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 3567899998753 223333333 8999999999974321 12235887753
No 115
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=77.11 E-value=1.6 Score=26.28 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=23.7
Q ss_pred cccccccccccCCCceEee-cCCCcccHhhHHH
Q 039522 105 MECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDK 136 (152)
Q Consensus 105 ~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~ 136 (152)
..|.+|...|..-..-..- .||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 4799999998765332223 7999999999754
No 116
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.58 E-value=2.7 Score=26.56 Aligned_cols=44 Identities=23% Similarity=0.558 Sum_probs=26.9
Q ss_pred cccccccccccccCCCceEee-c--CC-CcccHhhHHHHhcC---CCCcccCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSEL-S--CK-HFFHRGCLDKWFDN---KHSTCPLCRSI 151 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l-~--C~-H~fh~~Ci~~wl~~---~~~~CP~Cr~~ 151 (152)
+...| ||..... +.. +.- . |. .-||..|+. +.. .+-.||.|+..
T Consensus 35 e~~yC-iC~~~~~-g~M-I~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEM-IGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCC-SCC-CCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCC-CCE-eEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 44557 9988643 322 222 4 54 579999987 332 23479999753
No 117
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=76.04 E-value=3.1 Score=24.86 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=19.0
Q ss_pred cccccccccccccCCCceEeecCCCcccHhh
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGC 133 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~C 133 (152)
....|+.|-+.+... .+ ..-+..||..|
T Consensus 14 ~~~~C~~C~~~I~~~-~~--~a~~~~~H~~C 41 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV-FV--KLRDRHRHPEC 41 (79)
T ss_dssp CCCCCSSSCCCCCSS-CE--ECSSCEECTTT
T ss_pred CCCccccCCCCccCc-EE--EECcceeCcCc
Confidence 456799998887742 22 23577888777
No 118
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=74.91 E-value=2.3 Score=33.77 Aligned_cols=48 Identities=19% Similarity=0.473 Sum_probs=31.0
Q ss_pred cccccccccccccCCCceEeecCCCc--ccHhhHHHHh-cCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHF--FHRGCLDKWF-DNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~--fh~~Ci~~wl-~~~~~~CP~Cr~~~ 152 (152)
-...||+-...+..+ ++...|.|. |-..-+.... +...-.||+|.+.+
T Consensus 248 vSL~CPlS~~ri~~P--vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 248 MSLQCPISYTRMKYP--SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp EESBCTTTSSBCSSE--EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred EeecCCCcccccccc--CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCccc
Confidence 446799988887766 555689998 5444333332 22344799998753
No 119
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=74.57 E-value=1.6 Score=28.51 Aligned_cols=44 Identities=20% Similarity=0.425 Sum_probs=26.5
Q ss_pred CCCcccccccccccccCCCceEee---cCCCcccHhhHHHHhcC---CCCcccCCC
Q 039522 100 SCSAAMECCVCLSRFQSDEEVSEL---SCKHFFHRGCLDKWFDN---KHSTCPLCR 149 (152)
Q Consensus 100 ~~~~~~~C~ICl~~~~~~~~~~~l---~C~H~fh~~Ci~~wl~~---~~~~CP~Cr 149 (152)
....+..|.+|.+. ++ ++.- .|...||..|+. +.. +.-.||.|+
T Consensus 11 ~~~~~~~C~~C~~~---G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 11 KQMHEDYCFQCGDG---GE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp CCSSCSSCTTTCCC---SE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred cCCCCCCCCcCCCC---Cc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 34466779999832 32 2222 388999999987 432 122477554
No 120
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.18 E-value=3.8 Score=24.57 Aligned_cols=28 Identities=11% Similarity=0.234 Sum_probs=15.3
Q ss_pred cccccccccccccCCCceEeecCCCcccHhh
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGC 133 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~C 133 (152)
....|+-|-+.+. +..+. .-+..||..|
T Consensus 14 ~~~~C~~C~~~I~-~~~v~--a~~~~~H~~C 41 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPLI--FKNDPYHPDH 41 (79)
T ss_dssp CCCBCTTTCCBCC-SCCCC--CSSSCCCTTT
T ss_pred CCCCCccCCCEec-ceEEE--ECcceeCCCC
Confidence 3456777777666 32222 2356666655
No 121
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=74.13 E-value=2.6 Score=33.37 Aligned_cols=48 Identities=17% Similarity=0.420 Sum_probs=31.2
Q ss_pred cccccccccccccCCCceEeecCCCc--ccHhhHHHHhc-CCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHF--FHRGCLDKWFD-NKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~--fh~~Ci~~wl~-~~~~~CP~Cr~~~ 152 (152)
-...||+=...+..+ ++...|.|. |-..-+-.... ...-.||+|.+.+
T Consensus 214 vSL~CPlS~~ri~~P--~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~ 264 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIP--CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKA 264 (360)
T ss_dssp EESBCTTTCSBCSSE--EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBC
T ss_pred EeeeCCCccceeccC--CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCccc
Confidence 446799988887766 455689998 55443333332 2344799998753
No 122
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=73.12 E-value=1.5 Score=29.19 Aligned_cols=45 Identities=22% Similarity=0.449 Sum_probs=27.2
Q ss_pred cccccccccccccCCCceEee-cCCCcccHhhHHHHhcCCCCcccCC
Q 039522 103 AAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFDNKHSTCPLC 148 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~C 148 (152)
....|..|...|..-..-..- .||.+||..|...... ....|-.|
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~-~vRVC~~C 63 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN-GPRLCLLC 63 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC-CceECHHH
Confidence 446799999998765332333 7999999999765443 12345444
No 123
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=72.86 E-value=4.6 Score=24.20 Aligned_cols=45 Identities=22% Similarity=0.624 Sum_probs=28.5
Q ss_pred ccccccccccccCCCceEee-cCCCcccHhhHHHH------h--cCCCCcccCCCC
Q 039522 104 AMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKW------F--DNKHSTCPLCRS 150 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~w------l--~~~~~~CP~Cr~ 150 (152)
...| ||....... .++.- .|..=||..|+.-- + ......||.|+.
T Consensus 16 ~~~C-~C~~~~~~~-~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 16 ALYC-ICRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp CCCS-TTCCCCCSS-CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCEE-ECCCccCCC-CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 4557 898876533 33333 78999999998421 1 124568999863
No 124
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=72.34 E-value=1.7 Score=31.65 Aligned_cols=35 Identities=20% Similarity=0.408 Sum_probs=25.8
Q ss_pred cccccccccccccCCCceEee-cCCCcccHhhHHHH
Q 039522 103 AAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKW 137 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~w 137 (152)
++..|.+|...|..-..-... .||++||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 346899999998755432333 79999999997653
No 125
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=72.03 E-value=1.4 Score=21.95 Aligned_cols=27 Identities=26% Similarity=0.645 Sum_probs=20.4
Q ss_pred cccccccccccCCCceEeecCCCcccHhh
Q 039522 105 MECCVCLSRFQSDEEVSELSCKHFFHRGC 133 (152)
Q Consensus 105 ~~C~ICl~~~~~~~~~~~l~C~H~fh~~C 133 (152)
..|+.|-..+...+++. .-|..||+.|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGG
T ss_pred CcCCccCCEEecceeEE--ECCeEecccC
Confidence 46999999887765544 3478899988
No 126
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=71.90 E-value=0.79 Score=36.57 Aligned_cols=50 Identities=18% Similarity=0.369 Sum_probs=0.0
Q ss_pred CCcccccccccccccCCCceEe-ecCCCcccHhhHHHHhcC------CCCcccCCCC
Q 039522 101 CSAAMECCVCLSRFQSDEEVSE-LSCKHFFHRGCLDKWFDN------KHSTCPLCRS 150 (152)
Q Consensus 101 ~~~~~~C~ICl~~~~~~~~~~~-l~C~H~fh~~Ci~~wl~~------~~~~CP~Cr~ 150 (152)
......|.+|...|..-..-.. -.||++||..|...+... ....|-.|-.
T Consensus 372 ~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~ 428 (434)
T 3mpx_A 372 VTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFG 428 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHH
Confidence 3455679999999865432222 279999999999776421 1235766643
No 127
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=71.83 E-value=1.5 Score=26.10 Aligned_cols=43 Identities=12% Similarity=0.156 Sum_probs=25.9
Q ss_pred cccccccccccccCCCceEeecCCCcccH-hhHHHHhcCCCCcccCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHR-GCLDKWFDNKHSTCPLCRS 150 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~-~Ci~~wl~~~~~~CP~Cr~ 150 (152)
.-..|..|...+....- ...=+..||. .|..+.+. ..|-.|..
T Consensus 26 ~CF~C~~C~~~L~~~~~--~~~~g~~yC~~~cy~~~f~---~~C~~C~~ 69 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGH--AEHEGKPYCNHPCYSAMFG---PKGFGRGG 69 (76)
T ss_dssp TTCBCTTTCCBCCTTTE--EEETTEEEETTTHHHHHSS---CCCSSCCC
T ss_pred CCCCccccCccCCCCce--ECcCCeEeeCHHHHHHHhC---ccCCCcCC
Confidence 44678888877765521 1234667787 58776542 35766654
No 128
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=70.42 E-value=0.57 Score=28.80 Aligned_cols=44 Identities=30% Similarity=0.627 Sum_probs=26.4
Q ss_pred ccccccccccCCCceEee-cCCCcccHhhHHHHhcC---CC-CcccCCCC
Q 039522 106 ECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFDN---KH-STCPLCRS 150 (152)
Q Consensus 106 ~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~---~~-~~CP~Cr~ 150 (152)
.|.||...-.. ..+..- .|...||..|+.+-+.. .. -.||.|++
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 35666554222 222222 78999999999865532 12 36999986
No 129
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=69.62 E-value=3.2 Score=28.78 Aligned_cols=32 Identities=22% Similarity=0.615 Sum_probs=24.3
Q ss_pred ccccccccccccc--CCCceEeecCCCcccHhhH
Q 039522 103 AAMECCVCLSRFQ--SDEEVSELSCKHFFHRGCL 134 (152)
Q Consensus 103 ~~~~C~ICl~~~~--~~~~~~~l~C~H~fh~~Ci 134 (152)
.+..|.+|...|. .+.......|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 5678999999863 3334444589999999997
No 130
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=69.51 E-value=1.1 Score=33.33 Aligned_cols=46 Identities=30% Similarity=0.603 Sum_probs=25.5
Q ss_pred ccccccccccCCCceEeecCCCcccHhhHHHHhcC---C-CCcccCCCCC
Q 039522 106 ECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDN---K-HSTCPLCRSI 151 (152)
Q Consensus 106 ~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~---~-~~~CP~Cr~~ 151 (152)
.|.+|...-..+..+..=.|...||..|+.+=+.. + .=.||.|+..
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 58888764322322222289999999999864432 2 2369999753
No 131
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.36 E-value=1 Score=27.60 Aligned_cols=44 Identities=25% Similarity=0.579 Sum_probs=28.4
Q ss_pred ccccccccccCCCceEee-cCCCcccHhhHHHHhcC---C-CCcccCCCC
Q 039522 106 ECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFDN---K-HSTCPLCRS 150 (152)
Q Consensus 106 ~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~---~-~~~CP~Cr~ 150 (152)
.|.||...-..+ .+..- .|...||..|+.+=+.. + .=.||.|+.
T Consensus 28 ~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPN-MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCST-TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCC-CEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 678887642222 33323 89999999999854432 2 236999975
No 132
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=69.17 E-value=2.2 Score=31.38 Aligned_cols=35 Identities=26% Similarity=0.529 Sum_probs=25.7
Q ss_pred cccccccccccccCCCceEee-cCCCcccHhhHHHH
Q 039522 103 AAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKW 137 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~w 137 (152)
.+..|.+|...|..-..-... .||.+||..|-...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 345899999998765332333 79999999997654
No 133
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=68.85 E-value=1.9 Score=27.79 Aligned_cols=11 Identities=45% Similarity=1.410 Sum_probs=10.3
Q ss_pred ccHhhHHHHhc
Q 039522 129 FHRGCLDKWFD 139 (152)
Q Consensus 129 fh~~Ci~~wl~ 139 (152)
||+.|+.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 134
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=68.85 E-value=2 Score=29.15 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=24.1
Q ss_pred cccccccccccccC--CCceEeecCCCcccHhhHH
Q 039522 103 AAMECCVCLSRFQS--DEEVSELSCKHFFHRGCLD 135 (152)
Q Consensus 103 ~~~~C~ICl~~~~~--~~~~~~l~C~H~fh~~Ci~ 135 (152)
....|.+|...|.- +.......|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 56789999999842 2233334899999999854
No 135
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=68.61 E-value=1.9 Score=27.70 Aligned_cols=11 Identities=55% Similarity=1.283 Sum_probs=10.3
Q ss_pred ccHhhHHHHhc
Q 039522 129 FHRGCLDKWFD 139 (152)
Q Consensus 129 fh~~Ci~~wl~ 139 (152)
||+.|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 136
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=67.31 E-value=1 Score=26.96 Aligned_cols=45 Identities=29% Similarity=0.577 Sum_probs=27.5
Q ss_pred ccccccccccCCCceEee-cCCCcccHhhHHHHhcC---C-CCcccCCCCC
Q 039522 106 ECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFDN---K-HSTCPLCRSI 151 (152)
Q Consensus 106 ~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~---~-~~~CP~Cr~~ 151 (152)
.|.||...-. +..+..- .|...||..|+.+=+.. + .=.||.|+..
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 4567765422 2232322 78999999999854432 2 3369999764
No 137
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=66.81 E-value=7.5 Score=25.54 Aligned_cols=38 Identities=16% Similarity=0.484 Sum_probs=24.7
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
....|+-|-+.+.....+. .-+..||..| .+|-.|+.+
T Consensus 60 ~~~~C~~C~~~I~~~~~v~--a~~~~wH~~C---------F~C~~C~~~ 97 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLY--AMDSYWHSRC---------LKCSSCQAQ 97 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEE--ETTEEEETTT---------SBCTTTCCB
T ss_pred cCCcCcCCCCCcCCcEEEE--eCCcEEcccc---------cCcCcCCCc
Confidence 4567999999887543232 3577788777 356666554
No 138
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=66.13 E-value=1.4 Score=28.90 Aligned_cols=32 Identities=34% Similarity=0.440 Sum_probs=20.6
Q ss_pred ccccccccccC------CCc-eEeecCCCcccHhhHHHH
Q 039522 106 ECCVCLSRFQS------DEE-VSELSCKHFFHRGCLDKW 137 (152)
Q Consensus 106 ~C~ICl~~~~~------~~~-~~~l~C~H~fh~~Ci~~w 137 (152)
.|.||+..-.. +.. +.--.|+..||..|+...
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 58888875311 122 222379999999998643
No 139
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=65.69 E-value=3.2 Score=24.31 Aligned_cols=45 Identities=27% Similarity=0.518 Sum_probs=29.3
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcC---CCCcccCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDN---KHSTCPLCRS 150 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~ 150 (152)
.+..|.||... ++.+..-.|...||..|+..-+.. ..-.||.|+.
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 56679999864 333322279999999999854432 2225888753
No 140
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.95 E-value=7.3 Score=22.82 Aligned_cols=29 Identities=24% Similarity=0.621 Sum_probs=16.4
Q ss_pred ccccccccccccCCCceEeecCCCcccHhh
Q 039522 104 AMECCVCLSRFQSDEEVSELSCKHFFHRGC 133 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~C 133 (152)
...|+.|.+.+...+.+.. .-+..||..|
T Consensus 11 ~~~C~~C~~~I~~~~~~~~-a~~~~~H~~C 39 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVN-SNGELYHEQC 39 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEE-ETTEEECTTT
T ss_pred CCCchhcCCccCCCceEEE-eCccEecccc
Confidence 4568888777764443321 2355666655
No 141
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.27 E-value=6.1 Score=23.55 Aligned_cols=28 Identities=14% Similarity=0.408 Sum_probs=16.3
Q ss_pred cccccccccccCCCceEeecCCCcccHhh
Q 039522 105 MECCVCLSRFQSDEEVSELSCKHFFHRGC 133 (152)
Q Consensus 105 ~~C~ICl~~~~~~~~~~~l~C~H~fh~~C 133 (152)
..|+.|-+.+..++.++ ..-+..||..|
T Consensus 16 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~C 43 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNV-EYKGTVWHKDC 43 (82)
T ss_dssp CBCSSSCCBCCSSSCEE-ECSSCEEETTT
T ss_pred CcCccCCcccccCceEE-EECcccccccc
Confidence 46777777776544432 12356677655
No 142
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=64.25 E-value=2.6 Score=27.04 Aligned_cols=39 Identities=23% Similarity=0.514 Sum_probs=22.6
Q ss_pred cccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 105 MECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 105 ~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
..||+|..++...... .+|..|-.. ++ ....||-|.++|
T Consensus 33 ~~CP~Cq~eL~~~g~~-------~hC~~C~~~-f~-~~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGH-------ARCRSCGEF-IE-MKALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEEETTE-------EEETTTCCE-EE-EEEECTTTCSBC
T ss_pred ccCccCCCcceecCCE-------EECccccch-hh-ccccCcchhhHH
Confidence 6799999887543222 223344222 11 334799998875
No 143
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.20 E-value=6.8 Score=22.62 Aligned_cols=10 Identities=20% Similarity=0.570 Sum_probs=4.7
Q ss_pred cccccccccc
Q 039522 106 ECCVCLSRFQ 115 (152)
Q Consensus 106 ~C~ICl~~~~ 115 (152)
.|+.|-+.+.
T Consensus 7 ~C~~C~~~I~ 16 (72)
T 1wyh_A 7 GCSACGETVM 16 (72)
T ss_dssp BCSSSCCBCC
T ss_pred CCccCCCccc
Confidence 3444544444
No 144
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=64.18 E-value=2.1 Score=22.02 Aligned_cols=16 Identities=19% Similarity=0.544 Sum_probs=12.3
Q ss_pred cccccccccccccCCC
Q 039522 103 AAMECCVCLSRFQSDE 118 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~ 118 (152)
+...||+|+..+...+
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 4578999999887654
No 145
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=63.03 E-value=0.7 Score=26.94 Aligned_cols=36 Identities=28% Similarity=0.600 Sum_probs=26.7
Q ss_pred cccccccccccCCCceEee---c--CCCcccHhhHHHHhcC
Q 039522 105 MECCVCLSRFQSDEEVSEL---S--CKHFFHRGCLDKWFDN 140 (152)
Q Consensus 105 ~~C~ICl~~~~~~~~~~~l---~--C~H~fh~~Ci~~wl~~ 140 (152)
..||-|...++..+....+ . |++.|+..|..+|-..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 4688888888776543333 3 8899999999998653
No 146
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.74 E-value=8.7 Score=22.22 Aligned_cols=28 Identities=14% Similarity=0.351 Sum_probs=12.9
Q ss_pred cccccccccccC--CCceEeecCCCcccHhh
Q 039522 105 MECCVCLSRFQS--DEEVSELSCKHFFHRGC 133 (152)
Q Consensus 105 ~~C~ICl~~~~~--~~~~~~l~C~H~fh~~C 133 (152)
..|+.|-+.+.. .+.++ ..-+..||..|
T Consensus 6 ~~C~~C~~~I~~~~~~~~~-~a~~~~wH~~C 35 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYI-SFEERQWHNDC 35 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCE-ECSSCEECTTT
T ss_pred CCCcCCCccccCCCCcceE-EECCcccCccc
Confidence 346666665553 21211 12355566554
No 147
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=62.61 E-value=3.7 Score=23.49 Aligned_cols=45 Identities=24% Similarity=0.544 Sum_probs=29.1
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcC---CCCcccCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDN---KHSTCPLCRS 150 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~ 150 (152)
.+..|.||... ++.+..-.|...||..|+.+-+.. +.-.||.|+.
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 45679999874 333332389999999999864432 2225888753
No 148
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=62.60 E-value=1.8 Score=24.16 Aligned_cols=44 Identities=18% Similarity=0.443 Sum_probs=26.9
Q ss_pred ccccccccccCCCceEee--cCCCcccHhhHHHHh---cCCCCcccCCC
Q 039522 106 ECCVCLSRFQSDEEVSEL--SCKHFFHRGCLDKWF---DNKHSTCPLCR 149 (152)
Q Consensus 106 ~C~ICl~~~~~~~~~~~l--~C~H~fh~~Ci~~wl---~~~~~~CP~Cr 149 (152)
.|.+|...+..+...+.- .|..=||..|+.--. ......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 378888887544433332 477789999965211 11455899885
No 149
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.19 E-value=8.4 Score=22.24 Aligned_cols=34 Identities=12% Similarity=0.387 Sum_probs=17.8
Q ss_pred ccccccccccccCCCceEeecCCCcccHhhHHHHhc
Q 039522 104 AMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFD 139 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~ 139 (152)
-..|..|...+... . ....=+..||..|..+.+.
T Consensus 33 CF~C~~C~~~L~~~-~-~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 33 CFVCSTCRAQLRGQ-H-FYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp TCBCSSSCCBCTTS-C-EEESSSCEEEHHHHHHHHH
T ss_pred CCcccccCCcCCcC-c-CEeeCCeEECHHHHHHHHc
Confidence 34566666665321 1 1123456677777666654
No 150
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.23 E-value=6.9 Score=22.53 Aligned_cols=10 Identities=20% Similarity=0.371 Sum_probs=4.8
Q ss_pred cccccccccc
Q 039522 106 ECCVCLSRFQ 115 (152)
Q Consensus 106 ~C~ICl~~~~ 115 (152)
.|..|-+.+.
T Consensus 7 ~C~~C~~~I~ 16 (70)
T 2d8x_A 7 GCHQCGEFII 16 (70)
T ss_dssp BCSSSCCBCC
T ss_pred cCccCCCEec
Confidence 3555554443
No 151
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.80 E-value=9 Score=23.36 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=13.5
Q ss_pred ccccccccccccCCCceEeecCCCcccHhh
Q 039522 104 AMECCVCLSRFQSDEEVSELSCKHFFHRGC 133 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~C 133 (152)
...|+.|-+.+. +..+. .-+..||..|
T Consensus 25 ~~~C~~C~~~I~-~~~v~--a~~~~~H~~C 51 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLV--ALGKSWHPEE 51 (90)
T ss_dssp CCBBSSSCCBCC-SCEEE--ETTEEECTTT
T ss_pred CCCCccCCCEec-ceEEE--ECCccccccC
Confidence 345777766663 22221 2355666554
No 152
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.75 E-value=10 Score=21.67 Aligned_cols=12 Identities=8% Similarity=0.285 Sum_probs=6.0
Q ss_pred CCcccHhhHHHH
Q 039522 126 KHFFHRGCLDKW 137 (152)
Q Consensus 126 ~H~fh~~Ci~~w 137 (152)
+..||..|..+.
T Consensus 51 ~~~yC~~cy~~~ 62 (70)
T 2d8z_A 51 DFAYCLNCFCDL 62 (70)
T ss_dssp SSEECHHHHHHH
T ss_pred CeEECHHHHHHH
Confidence 445555555444
No 153
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.66 E-value=7 Score=22.58 Aligned_cols=11 Identities=18% Similarity=0.489 Sum_probs=5.6
Q ss_pred ccccccccccC
Q 039522 106 ECCVCLSRFQS 116 (152)
Q Consensus 106 ~C~ICl~~~~~ 116 (152)
.|+.|-+.+..
T Consensus 7 ~C~~C~~~I~~ 17 (72)
T 1x4k_A 7 GCQECKKTIMP 17 (72)
T ss_dssp CBSSSCCCCCS
T ss_pred CCccCCCcccC
Confidence 45555555443
No 154
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=58.33 E-value=5.7 Score=25.58 Aligned_cols=47 Identities=28% Similarity=0.629 Sum_probs=30.5
Q ss_pred ccccccccccccCCCceEee--cCCCcccHhhHHHH------h---cCCCCcccCCCC
Q 039522 104 AMECCVCLSRFQSDEEVSEL--SCKHFFHRGCLDKW------F---DNKHSTCPLCRS 150 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l--~C~H~fh~~Ci~~w------l---~~~~~~CP~Cr~ 150 (152)
...|.||...+......+.- .|..=||..|+.-- + ......||.|+.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~ 60 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLK 60 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHH
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccC
Confidence 45699999998665444433 58889999997411 1 012346998864
No 155
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=58.12 E-value=6.3 Score=23.37 Aligned_cols=32 Identities=19% Similarity=0.546 Sum_probs=24.2
Q ss_pred CcccccccccccccCCCceEeecC-CCcccHhhHHHH
Q 039522 102 SAAMECCVCLSRFQSDEEVSELSC-KHFFHRGCLDKW 137 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l~C-~H~fh~~Ci~~w 137 (152)
.+..-|.||.++ ..++.+.| +-.||..|...-
T Consensus 6 ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 355679999887 23566788 889999998764
No 156
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=57.30 E-value=4.6 Score=24.98 Aligned_cols=13 Identities=23% Similarity=0.736 Sum_probs=8.2
Q ss_pred cccccccccccCC
Q 039522 105 MECCVCLSRFQSD 117 (152)
Q Consensus 105 ~~C~ICl~~~~~~ 117 (152)
..||.|..++...
T Consensus 3 ~~CP~C~~~l~~~ 15 (81)
T 2jrp_A 3 ITCPVCHHALERN 15 (81)
T ss_dssp CCCSSSCSCCEEC
T ss_pred CCCCCCCCccccC
Confidence 3577777766544
No 157
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=56.90 E-value=7.1 Score=23.14 Aligned_cols=48 Identities=17% Similarity=0.378 Sum_probs=29.8
Q ss_pred CcccccccccccccCCCceEee-cCCCcccHhhHHHHhc---CCCCcccCCCC
Q 039522 102 SAAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFD---NKHSTCPLCRS 150 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~---~~~~~CP~Cr~ 150 (152)
.....| ||......+...+.- .|..=||..|+.---. .....||.|+.
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 345568 798876544333333 7888899999764211 13347988853
No 158
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=56.21 E-value=11 Score=24.38 Aligned_cols=46 Identities=11% Similarity=0.179 Sum_probs=28.2
Q ss_pred cccccccccccC-CCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 105 MECCVCLSRFQS-DEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 105 ~~C~ICl~~~~~-~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
..|..|-..+.. +.. -...=+..||..|..+.+. ....|-.|..+|
T Consensus 33 F~C~~C~~~L~~~~~~-~~~~~g~~yC~~cy~~~f~-~~~~C~~C~~~I 79 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTS-SYTKSGMILCRNDYIRLFG-NSGAGGSGGHMG 79 (122)
T ss_dssp HCCSSSCCCTTTSEEC-CEEETTEEECHHHHHHHHC-CCCSSSCSSCCS
T ss_pred CCcCCCCCcccccCCe-EEEECCeeecHHHHHHHcC-CCCccccCCCCc
Confidence 467777777642 111 1123466788888888764 222688887765
No 159
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.87 E-value=7.7 Score=23.08 Aligned_cols=26 Identities=27% Similarity=0.549 Sum_probs=16.0
Q ss_pred cccccccccccCCCceEeecCCCcccHhh
Q 039522 105 MECCVCLSRFQSDEEVSELSCKHFFHRGC 133 (152)
Q Consensus 105 ~~C~ICl~~~~~~~~~~~l~C~H~fh~~C 133 (152)
..|+.|-+.+. +..+. .-+..||..|
T Consensus 16 ~~C~~C~~~I~-~~~v~--a~~~~wH~~C 41 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS--ALGKTYHPDC 41 (81)
T ss_dssp CBCTTTCCBCC-SCCEE--ETTEEECTTT
T ss_pred CcCccccCEec-cceEE--ECCceeCccC
Confidence 36888888776 33322 3466777766
No 160
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=55.22 E-value=7.2 Score=25.44 Aligned_cols=36 Identities=14% Similarity=0.397 Sum_probs=21.9
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhc
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFD 139 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~ 139 (152)
....|..|-..+..++... ..=+..||..|..+.+.
T Consensus 35 ~CF~C~~C~~~L~~g~~f~-~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYL-LINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEE-ECSSSEEEGGGHHHHHH
T ss_pred ccCccccCCCCCCCCCcEE-eeCCEEEcHHHhHHHhc
Confidence 4566777777765443322 23466777777777663
No 161
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=55.04 E-value=2.9 Score=25.07 Aligned_cols=10 Identities=20% Similarity=0.531 Sum_probs=4.7
Q ss_pred cccccccccc
Q 039522 106 ECCVCLSRFQ 115 (152)
Q Consensus 106 ~C~ICl~~~~ 115 (152)
.|+.|-+.+.
T Consensus 9 ~C~~C~~~I~ 18 (81)
T 1a7i_A 9 KCGACGRTVY 18 (81)
T ss_dssp BCSSSCCBCS
T ss_pred cCcCcCcccc
Confidence 3555544443
No 162
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=53.57 E-value=12 Score=21.30 Aligned_cols=30 Identities=27% Similarity=0.627 Sum_probs=19.6
Q ss_pred cccccccccccccCCCceEeecCCCcccHhh
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGC 133 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~C 133 (152)
....|+.|...+...+.++. .-+..||..|
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~-~~~~~~H~~C 39 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVN-SNGELYHEQC 39 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEE-ETTEEEETTT
T ss_pred CCccchhcCccccCCceEEE-eCcCeeCcCC
Confidence 34569999888876654432 3466788766
No 163
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.16 E-value=12 Score=21.94 Aligned_cols=28 Identities=14% Similarity=0.362 Sum_probs=14.1
Q ss_pred cccccccccccC--CCceEeecCCCcccHhh
Q 039522 105 MECCVCLSRFQS--DEEVSELSCKHFFHRGC 133 (152)
Q Consensus 105 ~~C~ICl~~~~~--~~~~~~l~C~H~fh~~C 133 (152)
..|+.|-+.+.. ....+ ..-+..||..|
T Consensus 6 ~~C~~C~~~I~~~g~~~~~-~a~~~~wH~~C 35 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFI-CFQDSQWHSEC 35 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEE-EETTEEEEGGG
T ss_pred CCCccCCCcccCCCCceeE-EECCcccCccc
Confidence 356777666653 22221 12355666655
No 164
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.09 E-value=7.9 Score=23.00 Aligned_cols=35 Identities=9% Similarity=0.336 Sum_probs=15.8
Q ss_pred ccccccccccccCCCceEeecCCCcccHhhHHHHh
Q 039522 104 AMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWF 138 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl 138 (152)
-..|..|...+..++......=+..||..|..+.+
T Consensus 41 CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~ 75 (81)
T 1x6a_A 41 CFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVV 75 (81)
T ss_dssp SCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHH
T ss_pred cCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHh
Confidence 34455555555433222111234555555555544
No 165
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=51.85 E-value=13 Score=21.05 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=13.3
Q ss_pred cccccccccccCCCceEeecCCCcccHhh
Q 039522 105 MECCVCLSRFQSDEEVSELSCKHFFHRGC 133 (152)
Q Consensus 105 ~~C~ICl~~~~~~~~~~~l~C~H~fh~~C 133 (152)
..|+.|-+.+. ++.+ ..-+..||..|
T Consensus 6 ~~C~~C~~~I~-~~~~--~a~~~~~H~~C 31 (66)
T 1nyp_A 6 PICGACRRPIE-GRVV--NAMGKQWHVEH 31 (66)
T ss_dssp CEETTTTEECC-SCEE--CCTTSBEETTT
T ss_pred CCCcccCCEec-ceEE--EECccccccCc
Confidence 45666666665 3221 23355666555
No 166
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=51.71 E-value=3.2 Score=27.00 Aligned_cols=23 Identities=35% Similarity=0.740 Sum_probs=14.5
Q ss_pred ecCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 123 LSCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 123 l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
..||+.|. .. + .....||.|+..
T Consensus 71 ~~CG~~F~----~~-~-~kPsrCP~CkSe 93 (105)
T 2gmg_A 71 RKCGFVFK----AE-I-NIPSRCPKCKSE 93 (105)
T ss_dssp TTTCCBCC----CC-S-SCCSSCSSSCCC
T ss_pred hhCcCeec----cc-C-CCCCCCcCCCCC
Confidence 46899881 11 1 144589999863
No 167
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.38 E-value=10 Score=21.73 Aligned_cols=13 Identities=8% Similarity=0.646 Sum_probs=6.8
Q ss_pred CCcccHhhHHHHh
Q 039522 126 KHFFHRGCLDKWF 138 (152)
Q Consensus 126 ~H~fh~~Ci~~wl 138 (152)
+..||..|..+.+
T Consensus 51 ~~~yC~~cy~~~f 63 (69)
T 2cur_A 51 DQYYCVDCYKNFV 63 (69)
T ss_dssp SCEEEHHHHHHHH
T ss_pred CEEECHHHhHHHh
Confidence 4455555555544
No 168
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=50.35 E-value=12 Score=21.72 Aligned_cols=48 Identities=23% Similarity=0.446 Sum_probs=28.9
Q ss_pred Cccccccccccc-ccCCCceEeecCCCcccHhhHHHHhcCCCC---cccCCC
Q 039522 102 SAAMECCVCLSR-FQSDEEVSELSCKHFFHRGCLDKWFDNKHS---TCPLCR 149 (152)
Q Consensus 102 ~~~~~C~ICl~~-~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~---~CP~Cr 149 (152)
.....|.||+.. |..+-.-...-|.-.||..|--+|-...+. .|-+||
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~ 58 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCR 58 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHH
T ss_pred CCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhh
Confidence 466789999974 555533333367788888886655322222 365554
No 169
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=49.63 E-value=22 Score=21.28 Aligned_cols=47 Identities=23% Similarity=0.514 Sum_probs=28.8
Q ss_pred cccccccccccccCCCceEee--cCCCcccHhhHHHHhc--------CCCCcccCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSEL--SCKHFFHRGCLDKWFD--------NKHSTCPLCRS 150 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l--~C~H~fh~~Ci~~wl~--------~~~~~CP~Cr~ 150 (152)
....| ||......+..+..= .|..=||..|+.---. ..+..||.|+.
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCc
Confidence 45568 898874444333222 5888999999853211 12457999864
No 170
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=49.23 E-value=2.3 Score=24.59 Aligned_cols=43 Identities=23% Similarity=0.620 Sum_probs=25.6
Q ss_pred cccccccccccccCCCceEee-c--CC-CcccHhhHHHHhcC---CCCcccCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSEL-S--CK-HFFHRGCLDKWFDN---KHSTCPLCRS 150 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l-~--C~-H~fh~~Ci~~wl~~---~~~~CP~Cr~ 150 (152)
+...| ||..... + .++.- . |. .-||..|+. +.. +.-.||.|+.
T Consensus 9 e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 44556 8987632 3 22222 4 44 579999997 432 2346988864
No 171
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=47.42 E-value=5.7 Score=19.43 Aligned_cols=9 Identities=33% Similarity=0.848 Sum_probs=6.4
Q ss_pred CcccCCCCC
Q 039522 143 STCPLCRSI 151 (152)
Q Consensus 143 ~~CP~Cr~~ 151 (152)
..||+|+..
T Consensus 4 ~~CpvCk~q 12 (28)
T 2jvx_A 4 FCCPKCQYQ 12 (28)
T ss_dssp EECTTSSCE
T ss_pred ccCcccccc
Confidence 478888763
No 172
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.36 E-value=18 Score=21.08 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=18.0
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHh
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWF 138 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl 138 (152)
+-..|..|...+..+.... ..=+..||..|..+..
T Consensus 30 ~CF~C~~C~~~L~~~~~f~-~~~~~~yC~~C~~~~~ 64 (73)
T 1wig_A 30 SCALCVRCGQMFAEGEEMY-LQGSSIWHPACRQAAR 64 (73)
T ss_dssp TTSCCSSSCCCCCSSCCCE-EETTEEECTTHHHHTS
T ss_pred CcCEeCCCCCCCCCCCeeE-eeCCEEEChHHChHhh
Confidence 3455666666665332221 2234566666666544
No 173
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=46.51 E-value=18 Score=28.92 Aligned_cols=33 Identities=18% Similarity=0.415 Sum_probs=22.8
Q ss_pred cccccccccccccCCCceEee--cCCCcccHhhHHHHh
Q 039522 103 AAMECCVCLSRFQSDEEVSEL--SCKHFFHRGCLDKWF 138 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l--~C~H~fh~~Ci~~wl 138 (152)
.+..|.+|-+. ++.+..= .|...||..||..++
T Consensus 92 ~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~ 126 (386)
T 2pv0_B 92 YQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLV 126 (386)
T ss_dssp SBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHT
T ss_pred CcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhc
Confidence 45567777653 3333333 688999999999987
No 174
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=45.55 E-value=14 Score=25.81 Aligned_cols=33 Identities=24% Similarity=0.464 Sum_probs=22.7
Q ss_pred cccccccccccccCCCceEee---cCCCcccHhhHHHHhc
Q 039522 103 AAMECCVCLSRFQSDEEVSEL---SCKHFFHRGCLDKWFD 139 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l---~C~H~fh~~Ci~~wl~ 139 (152)
.+..|.||-+. + .+..- .|...||..||..++-
T Consensus 78 ~~~yC~wC~~G---g-~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 78 YQSYCTICCGG---R-EVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp SBSSCTTTSCC---S-EEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CcceeeEecCC---C-eEEeeCCCCCCCchhHHHHHHhcC
Confidence 45568888653 2 22222 4889999999999873
No 175
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=43.56 E-value=3.3 Score=23.81 Aligned_cols=43 Identities=26% Similarity=0.636 Sum_probs=26.1
Q ss_pred cccccccccccccCCCceEee-c--CC-CcccHhhHHHHhcC---CCCcccCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSEL-S--CK-HFFHRGCLDKWFDN---KHSTCPLCRS 150 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l-~--C~-H~fh~~Ci~~wl~~---~~~~CP~Cr~ 150 (152)
+..-| ||..... + .++.- . |. .-||..|+. +.. +.-.||.|+.
T Consensus 8 e~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 44457 9987642 3 22222 5 55 689999997 332 2346998865
No 176
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.53 E-value=19 Score=21.28 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=14.7
Q ss_pred cccccccccccCCCceEeecCCCcccHhh
Q 039522 105 MECCVCLSRFQSDEEVSELSCKHFFHRGC 133 (152)
Q Consensus 105 ~~C~ICl~~~~~~~~~~~l~C~H~fh~~C 133 (152)
..|+.|-..+.....++. .-+..||..|
T Consensus 16 ~~C~~C~~~I~~~~~~~~-a~~~~~H~~C 43 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELF-YEDRHFHEGC 43 (82)
T ss_dssp CBCTTTCCBCCSSCCBCC-CSSCCCBTTT
T ss_pred CcCccCCCccccCcEEEE-eCCccccccC
Confidence 357777777663222211 2356666655
No 177
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.43 E-value=13 Score=22.60 Aligned_cols=34 Identities=18% Similarity=0.406 Sum_probs=23.2
Q ss_pred CCcccccccccccccCC--CceEeecCCCcccHhhH
Q 039522 101 CSAAMECCVCLSRFQSD--EEVSELSCKHFFHRGCL 134 (152)
Q Consensus 101 ~~~~~~C~ICl~~~~~~--~~~~~l~C~H~fh~~Ci 134 (152)
.+.+..|+.|.+.|..- .....-.|.|..|.+|-
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 45677899999987432 12223368899888884
No 178
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.83 E-value=19 Score=21.11 Aligned_cols=9 Identities=22% Similarity=0.803 Sum_probs=4.2
Q ss_pred ccccccccc
Q 039522 106 ECCVCLSRF 114 (152)
Q Consensus 106 ~C~ICl~~~ 114 (152)
.|+.|-+.+
T Consensus 17 ~C~~C~~~I 25 (80)
T 2cuq_A 17 RCARCSKTL 25 (80)
T ss_dssp CCTTTCCCC
T ss_pred cCCCCCCEe
Confidence 355554444
No 179
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=39.69 E-value=28 Score=21.33 Aligned_cols=44 Identities=14% Similarity=0.388 Sum_probs=24.6
Q ss_pred ccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 104 AMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
-..|..|...+....- ...=+..||..|..+. ....|..|..+|
T Consensus 33 CF~C~~C~~~L~~~~~--~~~~g~~yC~~cy~~~---~~~~C~~C~~~I 76 (101)
T 2cup_A 33 CFRCAKCLHPLANETF--VAKDNKILCNKCTTRE---DSPKCKGCFKAI 76 (101)
T ss_dssp TCCCSSSCCCTTSSCC--EEETTEEECHHHHTTC---CCCBCSSSCCBC
T ss_pred CCcccccCCCCCcCee--ECcCCEEEChhHhhhh---cCCccccCCCcc
Confidence 3557777666643211 1233566777776442 234788887664
No 180
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=39.37 E-value=17 Score=23.21 Aligned_cols=36 Identities=11% Similarity=0.144 Sum_probs=21.0
Q ss_pred cccccccccccccC-CCceEeecCCCcccHhhHHHHhc
Q 039522 103 AAMECCVCLSRFQS-DEEVSELSCKHFFHRGCLDKWFD 139 (152)
Q Consensus 103 ~~~~C~ICl~~~~~-~~~~~~l~C~H~fh~~Ci~~wl~ 139 (152)
.-..|..|...+.. +... ...=+..||..|..+-+.
T Consensus 29 ~CF~C~~C~~~L~~~g~~~-~~~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRL-YYKLGRKLCRRDYLRLGG 65 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCC-CCBTTBCCCHHHHHHHHT
T ss_pred hcCcccccCCchhcCCCee-EEECCeeechHHHHHHhC
Confidence 44567777777653 2111 123366788888777664
No 181
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=39.33 E-value=20 Score=25.15 Aligned_cols=13 Identities=15% Similarity=0.219 Sum_probs=6.9
Q ss_pred cccccccccccCC
Q 039522 105 MECCVCLSRFQSD 117 (152)
Q Consensus 105 ~~C~ICl~~~~~~ 117 (152)
..|+.|-+.+...
T Consensus 116 ~~C~~C~~~I~~~ 128 (192)
T 1b8t_A 116 DGCPRCGQAVYAA 128 (192)
T ss_dssp EECTTTSCEECSS
T ss_pred CcCCCCCCEecCc
Confidence 3466665555443
No 182
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=39.02 E-value=21 Score=20.69 Aligned_cols=37 Identities=19% Similarity=0.392 Sum_probs=22.3
Q ss_pred cccccccccccC---CCceEeecCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 105 MECCVCLSRFQS---DEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 105 ~~C~ICl~~~~~---~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
..|+.|-+.+.. ....+ ..-+..||..| .+|-.|+.+
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~-~a~~~~~H~~C---------F~C~~C~~~ 55 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVV-AYEGQSWHDYC---------FHCKKCSVN 55 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEE-EETTEEEETTT---------CBCSSSCCB
T ss_pred ccCcccCCcccCCCCCceeE-EECcceeCccc---------CEehhcCCC
Confidence 568888888774 22222 23467788766 256666554
No 183
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.45 E-value=17 Score=21.51 Aligned_cols=10 Identities=20% Similarity=0.710 Sum_probs=5.0
Q ss_pred cccccccccc
Q 039522 106 ECCVCLSRFQ 115 (152)
Q Consensus 106 ~C~ICl~~~~ 115 (152)
.|+.|-+.+.
T Consensus 17 ~C~~C~~~I~ 26 (81)
T 2dlo_A 17 KCATCSQPIL 26 (81)
T ss_dssp BCTTTCCBCC
T ss_pred ccccCCCeec
Confidence 4555555544
No 184
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=36.97 E-value=10 Score=18.05 Aligned_cols=7 Identities=43% Similarity=1.621 Sum_probs=4.8
Q ss_pred cccCCCC
Q 039522 144 TCPLCRS 150 (152)
Q Consensus 144 ~CP~Cr~ 150 (152)
.||+|.+
T Consensus 8 qcpvcqq 14 (29)
T 3vhs_A 8 QCPVCQQ 14 (29)
T ss_dssp ECTTTCC
T ss_pred eChHHHH
Confidence 5777764
No 185
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=36.83 E-value=22 Score=20.01 Aligned_cols=27 Identities=15% Similarity=0.354 Sum_probs=14.9
Q ss_pred ccccccccccCCCceEeecCCCccc--Hhh
Q 039522 106 ECCVCLSRFQSDEEVSELSCKHFFH--RGC 133 (152)
Q Consensus 106 ~C~ICl~~~~~~~~~~~l~C~H~fh--~~C 133 (152)
.|+-|-+.+..++..+ ..-+..|| ..|
T Consensus 4 ~C~~C~~~I~~~~~~v-~a~~~~wH~~~~C 32 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRV-TYNNFSWHASTEC 32 (65)
T ss_dssp ECTTTSSEECTTSCEE-EETTEEEETTTTT
T ss_pred CCcCCCCeeccCceEE-EECCCccCCCCCC
Confidence 4777777766532222 12366677 655
No 186
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=35.63 E-value=5.4 Score=23.14 Aligned_cols=43 Identities=26% Similarity=0.634 Sum_probs=25.9
Q ss_pred cccccccccccccCCCceEee-c--CC-CcccHhhHHHHhcC---CCCcccCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSEL-S--CK-HFFHRGCLDKWFDN---KHSTCPLCRS 150 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l-~--C~-H~fh~~Ci~~wl~~---~~~~CP~Cr~ 150 (152)
+...| ||.... .+ .++.- . |. .-||..|+. +.. +.-.||.|+.
T Consensus 10 e~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 44557 998863 23 22222 5 44 789999987 322 2346998864
No 187
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.39 E-value=20 Score=21.04 Aligned_cols=10 Identities=20% Similarity=0.444 Sum_probs=5.3
Q ss_pred cccccccccc
Q 039522 106 ECCVCLSRFQ 115 (152)
Q Consensus 106 ~C~ICl~~~~ 115 (152)
.|+.|-+.+.
T Consensus 17 ~C~~C~~~I~ 26 (80)
T 1x3h_A 17 KCGGCNRPVL 26 (80)
T ss_dssp BCTTTCCBCC
T ss_pred ccccCCCeec
Confidence 4555555544
No 188
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=33.78 E-value=2.9 Score=25.54 Aligned_cols=14 Identities=29% Similarity=0.804 Sum_probs=12.6
Q ss_pred cCCCcccHhhHHHH
Q 039522 124 SCKHFFHRGCLDKW 137 (152)
Q Consensus 124 ~C~H~fh~~Ci~~w 137 (152)
.|++.||..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 58999999999887
No 189
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=33.68 E-value=18 Score=21.23 Aligned_cols=46 Identities=22% Similarity=0.588 Sum_probs=29.0
Q ss_pred cccccccccccccCCCceEee-cCCCcccHhhHHHHhc--CCCCcccCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFD--NKHSTCPLCRS 150 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~--~~~~~CP~Cr~ 150 (152)
+...| ||..... +...+.- .|..=||..|+.---. .....||.|+.
T Consensus 18 ~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 45568 9988755 3333333 7899999999864221 12347988865
No 190
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=33.14 E-value=33 Score=22.14 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=10.7
Q ss_pred CCcccHhhHHHHhcCCCCcccCCCC
Q 039522 126 KHFFHRGCLDKWFDNKHSTCPLCRS 150 (152)
Q Consensus 126 ~H~fh~~Ci~~wl~~~~~~CP~Cr~ 150 (152)
+..||..|..+-+. ....|..|..
T Consensus 51 g~~yC~~~y~~~~~-~~~~C~~C~~ 74 (131)
T 2xjy_A 51 GRKLCRRDYLRLFG-QDGLCASCDK 74 (131)
T ss_dssp TEEECHHHHHHHHC-CCEECTTTCC
T ss_pred CEEeecCchhhhCC-CccChhhcCC
Confidence 44455555555432 1114555544
No 191
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=32.45 E-value=28 Score=24.25 Aligned_cols=27 Identities=22% Similarity=0.527 Sum_probs=12.7
Q ss_pred ccccccccccCCCceEeecCCCcccHhh
Q 039522 106 ECCVCLSRFQSDEEVSELSCKHFFHRGC 133 (152)
Q Consensus 106 ~C~ICl~~~~~~~~~~~l~C~H~fh~~C 133 (152)
.|..|-..+...+.++. .-++.||..|
T Consensus 71 ~C~~C~~~I~~~e~~i~-a~~~~~H~~C 97 (188)
T 1rut_X 71 ACSACGQSIPASELVMR-AQGNVYHLKC 97 (188)
T ss_dssp ECTTTCCEECTTSEEEE-ETTEEECGGG
T ss_pred ccccCCCccccCcEEEE-cCCCEEeCCC
Confidence 36666555544332211 2355566555
No 192
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=31.60 E-value=4.2 Score=25.11 Aligned_cols=14 Identities=29% Similarity=0.923 Sum_probs=12.2
Q ss_pred cCCCcccHhhHHHH
Q 039522 124 SCKHFFHRGCLDKW 137 (152)
Q Consensus 124 ~C~H~fh~~Ci~~w 137 (152)
.|++.||..|-..|
T Consensus 48 ~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 48 QCHQTFCVRCKRQW 61 (86)
T ss_dssp TTCCEECSSSCSBC
T ss_pred CCCCccccccCCch
Confidence 49999999998887
No 193
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=30.10 E-value=26 Score=22.74 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=15.0
Q ss_pred EeecCCCcccHhhHHHHhcCCCC-cccCCCCC
Q 039522 121 SELSCKHFFHRGCLDKWFDNKHS-TCPLCRSI 151 (152)
Q Consensus 121 ~~l~C~H~fh~~Ci~~wl~~~~~-~CP~Cr~~ 151 (152)
....|||.|-.. .... .||.|..+
T Consensus 75 ~C~~CG~~~e~~-------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 75 ECKDCSHVFKPN-------ALDYGVCEKCHSK 99 (119)
T ss_dssp ECSSSSCEECSC-------CSTTCCCSSSSSC
T ss_pred EcCCCCCEEeCC-------CCCCCcCccccCC
Confidence 334678877641 2345 79999764
No 194
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=29.78 E-value=31 Score=23.87 Aligned_cols=13 Identities=15% Similarity=0.301 Sum_probs=7.8
Q ss_pred ccccccccccccC
Q 039522 104 AMECCVCLSRFQS 116 (152)
Q Consensus 104 ~~~C~ICl~~~~~ 116 (152)
...|..|-+.+..
T Consensus 60 ~~~C~~C~~~I~~ 72 (182)
T 2jtn_A 60 IPMCAGCDQHILD 72 (182)
T ss_dssp CCBCBTSSSBCCC
T ss_pred CCcCccCCCCccC
Confidence 4567777666553
No 195
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=29.09 E-value=32 Score=23.93 Aligned_cols=9 Identities=33% Similarity=1.043 Sum_probs=6.7
Q ss_pred CcccCCCCC
Q 039522 143 STCPLCRSI 151 (152)
Q Consensus 143 ~~CP~Cr~~ 151 (152)
..||+|..+
T Consensus 154 ~~CP~Cg~~ 162 (170)
T 3pwf_A 154 EYCPVCGAP 162 (170)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCCCC
Confidence 389999753
No 196
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=27.53 E-value=18 Score=24.74 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=12.4
Q ss_pred ecCCCcccHhhHHHHhcCCCCcccCCCCC
Q 039522 123 LSCKHFFHRGCLDKWFDNKHSTCPLCRSI 151 (152)
Q Consensus 123 l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 151 (152)
..|||.|-.. .....||.|..+
T Consensus 136 ~~Cg~~~~~~-------~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 136 IGCGRKFSTL-------PPGGVCPDCGSK 157 (165)
T ss_dssp SSSCCEESSC-------CGGGBCTTTCCB
T ss_pred CCCCCcccCC-------CCCCcCCCCCCc
Confidence 3577777432 122368888654
No 197
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=27.47 E-value=20 Score=22.15 Aligned_cols=33 Identities=21% Similarity=0.538 Sum_probs=21.1
Q ss_pred ccccccccccccCCCceEe--ecCCCcccHhhHHHH
Q 039522 104 AMECCVCLSRFQSDEEVSE--LSCKHFFHRGCLDKW 137 (152)
Q Consensus 104 ~~~C~ICl~~~~~~~~~~~--l~C~H~fh~~Ci~~w 137 (152)
...|.||.+. ..+.-+.. -.|.-.||..|..+-
T Consensus 17 ~l~C~iC~~~-~~GAciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 17 KLTCYLCKQK-GVGASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCBTTTTBC-CSSCEEECSCTTTCCEEEHHHHHHH
T ss_pred cCCCcCCCCC-CCcEeEecCCCCCCCcCcHHHHHHC
Confidence 4579999653 11322222 258999999998764
No 198
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=26.87 E-value=42 Score=27.50 Aligned_cols=46 Identities=26% Similarity=0.626 Sum_probs=29.0
Q ss_pred cccccccccccccCCCceEee-cCCCcccHhhHHHHhcC----CCCcccCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFDN----KHSTCPLCR 149 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~----~~~~CP~Cr 149 (152)
+...| ||......+...+.. .|..=||..|+.---.. ....||.|+
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~ 86 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCA 86 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCc
Confidence 33446 998876544444444 79999999998532110 234699886
No 199
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=26.38 E-value=59 Score=20.73 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=25.2
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHHHhcCCCCcccCCCCCC
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSIL 152 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 152 (152)
+-..|..|...+... . -...=+..||..|..+.+ ...|..|..+|
T Consensus 29 ~CF~C~~C~~~L~~~-~-f~~~~g~~yC~~cy~~~~---~~~C~~C~~~I 73 (126)
T 2xqn_T 29 KHFCCFDCDSILAGE-I-YVMVNDKPVCKPCYVKNH---AVVCQGCHNAI 73 (126)
T ss_dssp GGSBCTTTCCBCTTS-E-EEEETTEEEEHHHHHHHS---CCBCTTTCSBC
T ss_pred CCCCcCCCCCCCCcC-E-EEeECCEEechHHhCcCc---CccCcccCCcC
Confidence 345677776666532 1 112346667777776643 23677776654
No 200
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.27 E-value=14 Score=23.54 Aligned_cols=6 Identities=50% Similarity=1.115 Sum_probs=3.3
Q ss_pred cccccc
Q 039522 106 ECCVCL 111 (152)
Q Consensus 106 ~C~ICl 111 (152)
.||+|.
T Consensus 49 ~CPvCg 54 (112)
T 1l8d_A 49 KCPVCG 54 (112)
T ss_dssp ECTTTC
T ss_pred CCCCCC
Confidence 466664
No 201
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=24.93 E-value=90 Score=18.18 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=17.7
Q ss_pred cccccccccccccCCCceEeecCCCcccH
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHR 131 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~ 131 (152)
....|..|...+... ... -.|+..||.
T Consensus 14 ~~~rC~~C~kkvgl~-~f~-CrCg~~FC~ 40 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVM-GFK-CKCGSTFCG 40 (64)
T ss_dssp CSCSCTTTCCCCTTS-CEE-CTTSCEECS
T ss_pred cCCcChhhCCccccc-CeE-eecCCEecc
Confidence 446799998875432 122 278999985
No 202
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=23.27 E-value=40 Score=18.94 Aligned_cols=15 Identities=13% Similarity=0.532 Sum_probs=10.9
Q ss_pred cccccccccccccCC
Q 039522 103 AAMECCVCLSRFQSD 117 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~ 117 (152)
+...|++|...+...
T Consensus 9 ~iL~CP~c~~~L~~~ 23 (56)
T 2kpi_A 9 EILACPACHAPLEER 23 (56)
T ss_dssp TSCCCSSSCSCEEEE
T ss_pred hheeCCCCCCcceec
Confidence 556799999876544
No 203
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=21.12 E-value=86 Score=18.35 Aligned_cols=45 Identities=27% Similarity=0.608 Sum_probs=27.8
Q ss_pred ccccccccccCCCceEee-cCCCcccHhhHHHHhc----CCCCcccCCCC
Q 039522 106 ECCVCLSRFQSDEEVSEL-SCKHFFHRGCLDKWFD----NKHSTCPLCRS 150 (152)
Q Consensus 106 ~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~----~~~~~CP~Cr~ 150 (152)
.-.||...+..+...+.- .|.-=||..|+.---. .....||.|+.
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHH
T ss_pred eEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcc
Confidence 344898776544343333 7899999999853211 12346888853
No 204
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=20.65 E-value=1.3e+02 Score=17.76 Aligned_cols=34 Identities=18% Similarity=0.396 Sum_probs=24.0
Q ss_pred cccccccccccccCCCceEeecCCCcccHhhHHH
Q 039522 103 AAMECCVCLSRFQSDEEVSELSCKHFFHRGCLDK 136 (152)
Q Consensus 103 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~ 136 (152)
.+..|.+|...-........+.|.-.||..|+..
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 4567999976431223345668999999999987
No 205
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=20.17 E-value=8.9 Score=29.61 Aligned_cols=43 Identities=16% Similarity=0.318 Sum_probs=25.9
Q ss_pred CcccccccccccccCC--------CceEeecCCCcccHhhHHHHhcCCCCcccCCCC
Q 039522 102 SAAMECCVCLSRFQSD--------EEVSELSCKHFFHRGCLDKWFDNKHSTCPLCRS 150 (152)
Q Consensus 102 ~~~~~C~ICl~~~~~~--------~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~ 150 (152)
+....||+|-..-... +..+. .+|.-|-..|-- .+..||.|-.
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~-----l~Cs~C~t~W~~-~R~~C~~Cg~ 230 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRY-----LSCSLCACEWHY-VRIKCSHCEE 230 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEE-----EEETTTCCEEEC-CTTSCSSSCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEE-----EEeCCCCCEEee-cCcCCcCCCC
Confidence 5667899998753221 22333 344456666643 4558999964
Done!