BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039523
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 65/128 (50%)
Query: 21 SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80
+L + Y +G+Y+ + + A+ L+ + W+ LG A K D ++A++ + +A++LD
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEA 140
P + EAW + + + EA +++AL+L + W N + G+ +A+E
Sbjct: 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY 125
Query: 141 VQMVLNIT 148
Q L +
Sbjct: 126 YQKALELD 133
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 50/98 (51%)
Query: 51 DGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEA 110
+ W+ LG A K D ++A++ + +A++LDP + EAW + + + EA +++A
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 111 LKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNIT 148
L+L + W N + G+ +A+E Q L +
Sbjct: 62 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 99
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 11 FQMISQLELRS------LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKAR 64
+Q +L+ RS L + Y +G+Y+ + + A+ L+ + W+ LG A K
Sbjct: 58 YQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 117
Query: 65 DVEKALDVFTRAVQLDP 81
D ++A++ + +A++LDP
Sbjct: 118 DYDEAIEYYQKALELDP 134
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%)
Query: 53 WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALK 112
W+ LG A K D ++A++ + +A++LDP N EAW + + + EA +++AL+
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 113 LKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150
L N + W N + G+ +A+E Q L + N
Sbjct: 72 LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 53/96 (55%)
Query: 21 SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80
+L + Y +G+Y+ + + A+ L+ + W+ LG A K D ++A++ + +A++LD
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Query: 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN 116
P N EAW + + + EA +++AL+L N
Sbjct: 74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 79 LDPEN-GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQA 137
+DP N EAW + + + EA +++AL+L N + W N + G+ +A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 138 LEAVQMVLNITNN 150
+E Q L + N
Sbjct: 63 IEYYQKALELDPN 75
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%)
Query: 53 WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALK 112
W+ LG A K D ++A++ + +A++L P N EAW + + + EA +++AL+
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 113 LKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150
L N + W N + G+ +A+E Q L + N
Sbjct: 72 LYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 109
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 21 SLARSAYNRGEYETSKILREAAMALNSLYP---DGWFALGAAALKARDVEKALDVFTRAV 77
+L + Y +G+Y+ + + A+ LYP + W+ LG A K D ++A++ + +A+
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKAL---ELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 78 QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN 116
+L P N EAW + + + EA +++AL+L N
Sbjct: 71 ELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 109
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 79 LDPEN-GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQA 137
+DP N EAW + + + EA +++AL+L N + W N + G+ +A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 138 LEAVQMVLNITNN 150
+E Q L + N
Sbjct: 63 IEYYQKALELYPN 75
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 53/97 (54%)
Query: 20 RSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
++L + Y +G+Y+ + + A+ L+ W+ LG A K D +KA++ + +A++L
Sbjct: 13 KNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALEL 72
Query: 80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN 116
DP N +AW + + ++A +++AL+L N
Sbjct: 73 DPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPN 109
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%)
Query: 53 WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALK 112
W LG A K D +KA++ + +A++LDP N AW + + + ++A +++AL+
Sbjct: 12 WKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALE 71
Query: 113 LKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150
L N + W + G+ +A+E Q L + N
Sbjct: 72 LDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPN 109
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 79 LDPEN-GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQA 137
+DP N EAW + + + ++A +++AL+L N W N + G+ +A
Sbjct: 3 MDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKA 62
Query: 138 LEAVQMVLNITNN 150
+E Q L + N
Sbjct: 63 IEYYQKALELDPN 75
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 57/107 (53%)
Query: 21 SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80
+LA +G+ + + + + A+ ++ + D + +G + +DV+ AL +TRA+Q++
Sbjct: 48 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 107
Query: 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV 127
P +A + +A +H EA +++ ALKLK + + N +H
Sbjct: 108 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 53 WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALK 112
W+ LG A K D ++A++ + +A++LDP N EAW + + + EA +++AL+
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 113 LKRN 116
L N
Sbjct: 72 LDPN 75
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 39/66 (59%)
Query: 21 SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80
+L + Y +G+Y+ + + A+ L+ + W+ LG A K D ++A++ + +A++LD
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Query: 81 PENGEA 86
P N EA
Sbjct: 74 PNNAEA 79
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 79 LDPEN-GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQA 137
+DP N EAW + + + EA +++AL+L N + W N + G+ +A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 138 LEAVQMVLNITNN 150
+E Q L + N
Sbjct: 63 IEYYQKALELDPN 75
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 42.4 bits (98), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 51 DGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEA 110
+ W+ LG A K D ++A++ + +A++LDP + EAW + + + EA +++A
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 63
Query: 111 LKL 113
L+L
Sbjct: 64 LEL 66
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 37/63 (58%)
Query: 21 SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80
+L + Y +G+Y+ + + A+ L+ + W+ LG A K D ++A++ + +A++LD
Sbjct: 8 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 67
Query: 81 PEN 83
P +
Sbjct: 68 PRS 70
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 46 NSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFI 105
S+ PD LG + + +KA+D FT A+ + P + WN + N+S+EA
Sbjct: 150 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 209
Query: 106 AFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR 152
A++ AL+L+ G+ + Y ++ + N+G EAV+ L N +R
Sbjct: 210 AYRRALELQ-PGY-IRSRY-NLGISCINLGAHREAVEHFLEALNMQR 253
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 54 FALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL 113
F G L+ D+ A+ +F AVQ DP++ EAW + + A A + L+L
Sbjct: 5 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 64
Query: 114 KRN 116
K +
Sbjct: 65 KPD 67
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 46 NSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFI 105
S+ PD LG + + +KA+D FT A+ + P + WN + N+S+EA
Sbjct: 173 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 232
Query: 106 AFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR 152
A++ AL+L+ G+ + Y ++ + N+G EAV+ L N +R
Sbjct: 233 AYRRALELQ-PGY-IRSRY-NLGISCINLGAHREAVEHFLEALNMQR 276
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 22 LARSAYNRG-EYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80
L + Y++G ++E LR+ F G L+ D+ A+ +F AVQ D
Sbjct: 4 LTSATYDKGYQFEEENPLRDHPQP---------FEEGLRRLQEGDLPNAVLLFEAAVQQD 54
Query: 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN 116
P++ EAW + + A A + L+LK +
Sbjct: 55 PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 90
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 46 NSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFI 105
S+ PD LG + + +KA+D FT A+ + P + WN + N+S+EA
Sbjct: 164 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 223
Query: 106 AFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR 152
A++ AL+L+ G+ + Y ++ + N+G EAV+ L N +R
Sbjct: 224 AYRRALELQ-PGY-IRSRY-NLGISCINLGAHREAVEHFLEALNMQR 267
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 54 FALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL 113
F G L+ D+ A+ +F AVQ DP++ EAW + + A A + L+L
Sbjct: 19 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 78
Query: 114 KRN 116
K +
Sbjct: 79 KPD 81
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 46 NSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFI 105
S+ PD LG + + +KA+D FT A+ + P + WN + N+S+EA
Sbjct: 173 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 232
Query: 106 AFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR 152
A++ AL+L+ G+ + Y ++ + N+G EAV+ L N +R
Sbjct: 233 AYRRALELQ-PGY-IRSRY-NLGISCINLGAHREAVEHFLEALNMQR 276
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 21 SLARSAYNRG-EYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
L + Y++G ++E LR+ F G L+ D+ A+ +F AVQ
Sbjct: 3 GLTSATYDKGYQFEEENPLRDHPQP---------FEEGLRRLQEGDLPNAVLLFEAAVQQ 53
Query: 80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN 116
DP++ EAW + + A A + L+LK +
Sbjct: 54 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 90
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 46 NSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFI 105
S+ PD LG + + +KA+D FT A+ + P + WN + N+S+EA
Sbjct: 213 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 272
Query: 106 AFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR 152
A++ AL+L+ G+ + Y ++ + N+G EAV+ L N +R
Sbjct: 273 AYRRALELQ-PGY-IRSRY-NLGISCINLGAHREAVEHFLEALNMQR 316
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 22 LARSAYNRG-EYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80
L + Y++G ++E LR+ F G L+ D+ A+ +F AVQ D
Sbjct: 44 LTSATYDKGYQFEEENPLRDHPQP---------FEEGLRRLQEGDLPNAVLLFEAAVQQD 94
Query: 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN 116
P++ EAW + + A A + L+LK +
Sbjct: 95 PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 130
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 12/143 (8%)
Query: 40 EAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK 99
+ A+ LN YP ++ G +D + A + F +A L+PEN + +ACL + K
Sbjct: 300 QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGK 359
Query: 100 SKEAFIAFKEALKLKRNGW-QLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELL 158
E+ F E KLK ++ ++ + D G+ A++ + KR++ E+
Sbjct: 360 FTESEAFFNET-KLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIA------KRLE-EVQ 411
Query: 159 ERI---VLNLEGRTSVIESDSCR 178
E+I + L G+ +++ S +
Sbjct: 412 EKIHVGIGPLIGKATILARQSSQ 434
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 13/86 (15%)
Query: 14 ISQLE-LRSLARSAY-----NRG-EYETSKILREA------AMALNSLYPDGWFALGAAA 60
I+QL+ L R AY NRG + T+K EA A+ L+ P + + A
Sbjct: 10 IAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACY 69
Query: 61 LKARDVEKALDVFTRAVQLDPENGEA 86
+ D+EK ++ T+A+++ P++ +A
Sbjct: 70 ISTGDLEKVIEFTTKALEIKPDHSKA 95
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 12/143 (8%)
Query: 40 EAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK 99
+ A+ LN YP ++ G +D + A + F +A L+PEN + +ACL + K
Sbjct: 296 QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGK 355
Query: 100 SKEAFIAFKEALKLKRNGW-QLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELL 158
E+ F E KLK ++ ++ + D G+ A++ + KR++ E+
Sbjct: 356 FTESEAFFNET-KLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIA------KRLE-EVQ 407
Query: 159 ERI---VLNLEGRTSVIESDSCR 178
E+I + L G+ +++ S +
Sbjct: 408 EKIHVGIGPLIGKATILARQSSQ 430
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 13/86 (15%)
Query: 14 ISQLE-LRSLARSAY-----NRG-EYETSKILREA------AMALNSLYPDGWFALGAAA 60
I+QL+ L R AY NRG + T+K EA A+ L+ P + + A
Sbjct: 6 IAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACY 65
Query: 61 LKARDVEKALDVFTRAVQLDPENGEA 86
+ D+EK ++ T+A+++ P++ +A
Sbjct: 66 ISTGDLEKVIEFTTKALEIKPDHSKA 91
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 52/109 (47%)
Query: 40 EAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK 99
E A+ L+ + D + LG +AR ++A+ + RA+ L P + +AC++ +
Sbjct: 193 EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL 252
Query: 100 SKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNIT 148
A ++ A++L+ + + N ++ + G++ +A + L +
Sbjct: 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 29 RGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPE----NG 84
RG+ + + A+ L + DG+ L AA + A D+E A+ + A+Q +P+
Sbjct: 80 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRS 139
Query: 85 EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMV 144
+ N++ L + +EA + +A++ + N W N V G I A+ +
Sbjct: 140 DLGNLLKAL----GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA 195
Query: 145 LNITNN 150
+ + N
Sbjct: 196 VTLDPN 201
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 66 VEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYS 125
++ A+D + RA++L P +A+ +A K EA + AL+L N +
Sbjct: 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312
Query: 126 HVALDVGNIGQALEAVQMVLNI 147
++ + GNI +A+ + L +
Sbjct: 313 NIKREQGNIEEAVRLYRKALEV 334
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 22 LARSAYNRGEYETSKILREAAMALNSLYPDG---WFALGAAALKARDVEKALDVFTRAVQ 78
LA Y G++E ++ M L PD L + + R ++++ T A++
Sbjct: 5 LAHREYQAGDFEAAE---RHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 79 LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQAL 138
+P EA++ + ++ + + +EA ++ AL+LK + + N + + G++ A+
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 139 EA 140
+A
Sbjct: 122 QA 123
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 51/110 (46%)
Query: 40 EAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK 99
+ A+ L+S ++ G ++ ++A F +A +LDPEN + +ACL +NK
Sbjct: 294 DKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENK 353
Query: 100 SKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITN 149
+ F EA + ++ ++ + D + +AL+ + + + N
Sbjct: 354 FDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 56 LGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR 115
LG AA K +D EKA + +A++LDP N +N A ++ + K E ++A+++
Sbjct: 14 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV-- 71
Query: 116 NGWQLWENYSHVALDVGNIGQALE 139
G + +Y +A + G A +
Sbjct: 72 -GRETRADYKLIAKAMSRAGNAFQ 94
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 31 EYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNII 90
EY + L AA+ +N +LG + + + A RAV+L P++ + WN +
Sbjct: 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKL 212
Query: 91 ACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQ-ALEAVQMV 144
N+ +EA A+ AL + ++ N +A+ N+ Q L A Q+V
Sbjct: 213 GATLANGNRPQEALDAYNRALDINPGYVRVMYN---MAVSYSNMSQYDLAAKQLV 264
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 31 EYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNII 90
EY + L AA+ +N +LG + + + A RAV+L P++ + WN +
Sbjct: 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKL 212
Query: 91 ACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQ-ALEAVQMV 144
N+ +EA A+ AL + ++ N +A+ N+ Q L A Q+V
Sbjct: 213 GATLANGNRPQEALDAYNRALDINPGYVRVMYN---MAVSYSNMSQYDLAAKQLV 264
>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|D Chain D, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|F Chain F, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|H Chain H, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|J Chain J, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|L Chain L, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
Length = 330
Score = 33.9 bits (76), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 56 LGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR 115
LG K + +ALD +A+ L P+N ++ I +H + + A F AL L+R
Sbjct: 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLXGNFENAVDYFHTALGLRR 301
Query: 116 N 116
+
Sbjct: 302 D 302
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%)
Query: 53 WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALK 112
W A+G L + +A F+++ +DP+ G AW A I+ + +A A+ A +
Sbjct: 376 WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR 435
Query: 113 LKRNGWQLWENYSHVALDVGNIGQALEAVQ 142
L + + + +GNI A E +Q
Sbjct: 436 LFQGTHLPYLFLGMQHMQLGNILLANEYLQ 465
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 50 PDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAW 87
P+ ++ G A + +++D+F +A+QLDPE + W
Sbjct: 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYW 43
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 27 YNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL--DPENG 84
Y+ G Y S L E A+ L+ W G A E+A+D + + + D N
Sbjct: 17 YDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK 76
Query: 85 EAWNIIA-CLHMIKNKSKEAFIA 106
+ W A L I+ K EA IA
Sbjct: 77 DVWAAKADALRYIEGKEVEAEIA 99
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Query: 3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNS--LYPDGWFALGAAA 60
P K L K + S R +++S + E K L A N + PD LG
Sbjct: 164 PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223
Query: 61 LKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK 114
+ + +A+D F A+ + PE+ WN + ++S+EA A+ AL+++
Sbjct: 224 HLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 27/65 (41%)
Query: 52 GWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEAL 111
G F G LK D+ + A+ DP + EAW + + A +A + L
Sbjct: 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126
Query: 112 KLKRN 116
+L+ N
Sbjct: 127 ELQPN 131
>pdb|1OUV|A Chain A, Helicobacter Cysteine Rich Protein C (Hcpc)
Length = 273
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 34 TSKILREAAMALNSLYPDGWFALGA----AALKARDVEKALDVFTRAVQLDPENGEAWNI 89
T+K L+ + A + Y +G +LG + RD +KA++ FT+A L+ +G+ I
Sbjct: 94 TNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTI 151
Query: 90 IACLHMIKNKS----KEAFIAFKEALKLK 114
+ L+ + K+A ++ +A LK
Sbjct: 152 LGSLYDAGRGTPKDLKKALASYDKACDLK 180
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 56 LGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR 115
LG L A + AL F AV DP+N A+ A + + KSK A + ++LK
Sbjct: 32 LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQLKX 91
Query: 116 NGWQLWENYSHVALDVGNIGQALEAVQMVL 145
+ H+ L G + +A + + VL
Sbjct: 92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVL 121
>pdb|2E2E|A Chain A, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
pdb|2E2E|B Chain B, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
Length = 177
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 11/51 (21%), Positives = 29/51 (56%)
Query: 64 RDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK 114
++ E L ++ +P+N E W ++ ++ +N + +A+++AL+L+
Sbjct: 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR 74
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 51 DGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACL---HMIKNKSKEAFIAF 107
+ W LG L D +L + +A+QL EN E + +A + ++ + +
Sbjct: 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMI 104
Query: 108 KEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRID-TELLERI 161
+AL L N + A N QA+E Q V+++ N+ RI+ T+L+E I
Sbjct: 105 DKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL-NSPRINRTQLVESI 158
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 56 LGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR 115
LG L A + AL F AV DP+N A+ A + + KSK A + ++LK
Sbjct: 32 LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM 91
Query: 116 NGWQLWENYSHVALDVGNIGQALEAVQMVL 145
+ H+ L G + +A + + VL
Sbjct: 92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVL 121
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%)
Query: 56 LGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR 115
LG L A + AL F AV DP+N A+ A + + KSK A + + LK
Sbjct: 9 LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIALKX 68
Query: 116 NGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIV 162
+ H+ L G + +A + + VL +++ + E ++V
Sbjct: 69 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV 115
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%)
Query: 42 AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSK 101
A+ALN++Y D ++ LG + +KA++ + + + + P A+ I + K
Sbjct: 99 AIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158
Query: 102 EAFIAF 107
EA F
Sbjct: 159 EAVKYF 164
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 65 DVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENY 124
++E+AL + +A++LD A+ ++++K KEA F++AL+ L+
Sbjct: 72 ELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYML 131
Query: 125 SHVALDVGNIGQALEAVQMVLNITNNKRIDTE 156
V + + AL +Q + + N DTE
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVELNEN---DTE 160
>pdb|3ZHE|A Chain A, Structure Of The C. Elegans Smg5-smg7 Complex
pdb|3ZHE|C Chain C, Structure Of The C. Elegans Smg5-smg7 Complex
Length = 420
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 65 DVEKALDV--FTRAVQLDPENGEAWNIIACL 93
+++K L V ++RA+ LDP G A++++A L
Sbjct: 123 EIQKCLAVGYYSRAIDLDPNQGRAFHVLAGL 153
>pdb|2VQ2|A Chain A, Crystal Structure Of Pilw, Widely Conserved Type Iv Pilus
Biogenesis Factor
Length = 225
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 35/65 (53%)
Query: 61 LKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQL 120
++ +D +A A++ DP+N AW + A ++ + +A +F++AL +K + ++
Sbjct: 19 MRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEI 78
Query: 121 WENYS 125
NY
Sbjct: 79 NNNYG 83
>pdb|4GNS|B Chain B, Crystal Structure Of The Chs5-Chs6 Exomer Cargo Adaptor
Complex
Length = 754
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 61 LKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQL 120
L D E AL V + +L ++ E+W +A H+ K + ++A A +L++N L
Sbjct: 348 LNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMPRLRKNDGHL 407
Query: 121 WENYS 125
YS
Sbjct: 408 ETMYS 412
>pdb|4ABN|A Chain A, Crystal Structure Of Full Length Mouse Strap (Ttc5)
pdb|4ABN|B Chain B, Crystal Structure Of Full Length Mouse Strap (Ttc5)
Length = 474
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 72 VFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN 116
+ ++AV+L+PE EAWN + ++ K A F AL +N
Sbjct: 125 LLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN 169
>pdb|6PRN|A Chain A, E1m, K50a, R52a Mutant Of Rh. Blastica Porin
Length = 289
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Query: 93 LHMIKNKSKEAFIAFKEALKLK-----------RNGWQLWENYSHVALDVGNIGQALEAV 141
++++ + + F AL ++ N Q W +Y+ V + VGN+ A ++V
Sbjct: 33 INIVGTTETDQGVTFGAALAMQWDDGDAFAGTAGNAAQFWTSYNGVTVSVGNVDTAFDSV 92
Query: 142 QMVLN 146
+ +
Sbjct: 93 ALTYD 97
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 58 AAALKA-RDVEKALDVFTRAVQLDPENGEAWN 88
AAAL+A +D KA+DV+ +A+ LD EA +
Sbjct: 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAAD 122
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 56 LGAAALKARDVEKALDVFTRAVQLDPEN 83
LG A K +D + AL + +A +LDP N
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTN 37
>pdb|8PRN|A Chain A, E1m, K50a, R52a, D97a, E99a Mutant Of Rh. Blastica Porin
Length = 289
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 93 LHMIKNKSKEAFIAFKEALKLK-----------RNGWQLWENYSHVALDVGNIGQALEAV 141
++++ + + F AL ++ N Q W +Y+ V + VGN+ A ++V
Sbjct: 33 INIVGTTETDQGVTFGAALAMQWDDGDAFAGTAGNAAQFWTSYNGVTVSVGNVDTAFDSV 92
Query: 142 QM 143
+
Sbjct: 93 AL 94
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 56 LGAAALKARDVEKALDVFTRAVQLDPEN 83
LG A K +D + AL + +A +LDP N
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTN 37
>pdb|1H6S|1 Chain 1, Asymmetric Conductivity Of Engineered Proteins
Length = 307
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 116 NGWQLWENYSHVALDVGNIGQALEAVQMVLN 146
N Q W +Y+ V + VGN+ A ++V + +
Sbjct: 67 NAAQFWTSYNGVTVSVGNVDTAFDSVALTYD 97
>pdb|1BH3|A Chain A, E1m, A116k Mutant Of Rh. Blastica Porin
Length = 289
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 116 NGWQLWENYSHVALDVGNIGQALEAVQMVLN 146
N Q W +Y+ V + VGN+ A ++V + +
Sbjct: 67 NAAQFWTSYNGVTVSVGNVDTAFDSVALTYD 97
>pdb|1PRN|A Chain A, Refined Structure Of Porin From Rhodopseudomonas Blastica
And Comparison With The Porin From Rhodobacter
Capsulatus
Length = 289
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 116 NGWQLWENYSHVALDVGNIGQALEAVQMVLN 146
N Q W +Y+ V + VGN+ A ++V + +
Sbjct: 67 NAAQFWTSYNGVTVSVGNVDTAFDSVALTYD 97
>pdb|3PRN|A Chain A, E1m, A104w Mutant Of Rh. Blastica Porin
Length = 289
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 116 NGWQLWENYSHVALDVGNIGQALEAVQMVLN 146
N Q W +Y+ V + VGN+ A ++V + +
Sbjct: 67 NAAQFWTSYNGVTVSVGNVDTAFDSVALTYD 97
>pdb|2PRN|A Chain A, Rhodopseudomonas Blastica Porin, Triple Mutant E1m, E99w,
A116w
Length = 289
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 119 QLWENYSHVALDVGNIGQALEAVQMVLN 146
Q W +Y+ V + VGN+ A ++V + +
Sbjct: 70 QFWTSYNGVTVSVGNVDTAFDSVALTYD 97
>pdb|7PRN|A Chain A, E1m, D97a, E99a Mutant Of Rh. Blastica Porin
Length = 289
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 116 NGWQLWENYSHVALDVGNIGQALEAVQM 143
N Q W +Y+ V + VGN+ A ++V +
Sbjct: 67 NAAQFWTSYNGVTVSVGNVDTAFDSVAL 94
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 40 EAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEA 86
+ + L+S + G+ A + R+ KA + A+Q+DP N EA
Sbjct: 71 DTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.130 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,593,339
Number of Sequences: 62578
Number of extensions: 242324
Number of successful extensions: 957
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 845
Number of HSP's gapped (non-prelim): 100
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)