Query 039523
Match_columns 244
No_of_seqs 354 out of 3393
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 10:32:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039523.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039523hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 99.9 3E-23 6.6E-28 166.6 16.5 159 1-159 305-463 (966)
2 KOG4626 O-linked N-acetylgluco 99.9 1E-23 2.2E-28 169.2 13.1 150 1-150 237-386 (966)
3 KOG1126 DNA-binding cell divis 99.9 6.4E-22 1.4E-26 159.9 13.1 167 1-167 440-606 (638)
4 TIGR00990 3a0801s09 mitochondr 99.9 1.6E-20 3.5E-25 160.4 21.1 150 1-150 350-499 (615)
5 TIGR00990 3a0801s09 mitochondr 99.9 4.5E-20 9.8E-25 157.6 21.6 164 1-164 313-479 (615)
6 KOG1126 DNA-binding cell divis 99.9 5.7E-21 1.2E-25 154.4 12.7 150 6-155 411-560 (638)
7 PRK12370 invasion protein regu 99.9 9E-20 2E-24 153.5 20.5 162 1-162 280-451 (553)
8 COG3063 PilF Tfp pilus assembl 99.9 1.1E-19 2.5E-24 129.9 17.5 144 16-159 35-180 (250)
9 KOG1155 Anaphase-promoting com 99.9 5.9E-20 1.3E-24 143.1 16.6 147 1-147 349-495 (559)
10 PRK15359 type III secretion sy 99.9 6E-20 1.3E-24 127.6 15.1 125 3-130 14-138 (144)
11 PRK12370 invasion protein regu 99.9 1.8E-19 4E-24 151.6 20.8 159 1-159 323-482 (553)
12 COG3063 PilF Tfp pilus assembl 99.8 2.7E-19 5.8E-24 128.0 18.0 167 1-167 54-222 (250)
13 TIGR02521 type_IV_pilW type IV 99.8 1.9E-18 4.1E-23 129.9 21.9 155 1-155 50-206 (234)
14 PRK09782 bacteriophage N4 rece 99.8 9.4E-19 2E-23 153.7 21.6 151 1-152 561-711 (987)
15 KOG1155 Anaphase-promoting com 99.8 8.4E-19 1.8E-23 136.7 16.2 160 7-166 321-480 (559)
16 PRK11189 lipoprotein NlpI; Pro 99.8 4.8E-18 1E-22 132.3 20.3 149 1-150 83-268 (296)
17 PRK15359 type III secretion sy 99.8 1.6E-18 3.4E-23 120.6 15.5 127 36-165 13-139 (144)
18 PRK15174 Vi polysaccharide exp 99.8 2.8E-18 6.1E-23 146.8 19.5 151 1-151 231-385 (656)
19 PRK11189 lipoprotein NlpI; Pro 99.8 1.3E-17 2.8E-22 129.9 19.8 148 2-150 46-197 (296)
20 PRK10370 formate-dependent nit 99.8 1.3E-17 2.9E-22 121.8 18.4 130 29-158 52-184 (198)
21 KOG0547 Translocase of outer m 99.8 6.1E-18 1.3E-22 132.8 14.9 150 1-150 345-494 (606)
22 PRK11447 cellulose synthase su 99.8 4.9E-17 1.1E-21 147.6 22.1 161 1-161 288-504 (1157)
23 KOG1125 TPR repeat-containing 99.8 5.1E-18 1.1E-22 135.6 13.1 167 2-168 305-517 (579)
24 PRK09782 bacteriophage N4 rece 99.8 2E-17 4.3E-22 145.4 17.9 151 1-152 595-745 (987)
25 PLN02789 farnesyltranstransfer 99.8 8.2E-17 1.8E-21 125.5 19.4 164 1-164 56-229 (320)
26 PRK15174 Vi polysaccharide exp 99.8 9.2E-17 2E-21 137.6 21.3 151 2-152 197-352 (656)
27 KOG1125 TPR repeat-containing 99.8 2.2E-17 4.9E-22 132.0 15.7 150 1-150 338-530 (579)
28 PRK15179 Vi polysaccharide bio 99.8 1.5E-16 3.2E-21 135.2 21.5 142 9-150 79-220 (694)
29 PRK10370 formate-dependent nit 99.8 4.5E-17 9.7E-22 119.1 15.8 118 2-119 59-179 (198)
30 TIGR02552 LcrH_SycD type III s 99.8 6E-17 1.3E-21 111.9 15.6 116 4-119 5-120 (135)
31 TIGR02552 LcrH_SycD type III s 99.8 8.4E-17 1.8E-21 111.2 15.9 129 37-165 4-132 (135)
32 TIGR02521 type_IV_pilW type IV 99.8 3.5E-16 7.6E-21 117.5 20.6 148 15-162 30-179 (234)
33 KOG0547 Translocase of outer m 99.8 4E-17 8.7E-22 128.3 14.7 158 2-159 380-544 (606)
34 TIGR03302 OM_YfiO outer membra 99.8 1.9E-16 4.1E-21 119.8 18.1 142 11-152 28-200 (235)
35 KOG1173 Anaphase-promoting com 99.8 1.9E-16 4.1E-21 126.4 18.2 144 23-166 387-537 (611)
36 PRK11788 tetratricopeptide rep 99.7 7E-16 1.5E-20 125.2 20.7 153 1-153 54-215 (389)
37 PRK11447 cellulose synthase su 99.7 3.6E-16 7.8E-21 142.0 20.9 156 1-156 480-675 (1157)
38 TIGR02917 PEP_TPR_lipo putativ 99.7 6.1E-16 1.3E-20 137.4 21.9 155 2-156 485-639 (899)
39 PRK11788 tetratricopeptide rep 99.7 7.1E-16 1.5E-20 125.2 20.3 133 18-150 109-246 (389)
40 TIGR02917 PEP_TPR_lipo putativ 99.7 6.7E-16 1.5E-20 137.1 21.8 158 1-158 518-675 (899)
41 PF13429 TPR_15: Tetratricopep 99.7 3.4E-17 7.3E-22 127.0 11.1 165 1-166 96-262 (280)
42 TIGR03302 OM_YfiO outer membra 99.7 1.9E-15 4.1E-20 114.3 18.9 150 1-150 52-235 (235)
43 PF13429 TPR_15: Tetratricopep 99.7 1.5E-16 3.2E-21 123.4 13.1 144 4-147 132-277 (280)
44 PLN02789 farnesyltranstransfer 99.7 1.8E-15 3.9E-20 118.0 18.0 163 1-163 91-266 (320)
45 PRK15363 pathogenicity island 99.7 1.5E-15 3.3E-20 104.0 15.0 113 39-151 23-136 (157)
46 KOG0553 TPR repeat-containing 99.7 6.5E-16 1.4E-20 115.0 14.0 118 52-169 83-200 (304)
47 KOG0553 TPR repeat-containing 99.7 3.7E-16 8.1E-21 116.3 12.3 120 16-135 81-200 (304)
48 PRK10049 pgaA outer membrane p 99.7 4.1E-15 9E-20 129.8 18.3 145 1-146 34-178 (765)
49 COG5010 TadD Flp pilus assembl 99.7 1.2E-14 2.7E-19 106.3 17.5 161 5-166 56-216 (257)
50 KOG3060 Uncharacterized conser 99.7 1.9E-14 4E-19 104.7 18.2 164 2-165 72-238 (289)
51 KOG1129 TPR repeat-containing 99.7 4.7E-16 1E-20 117.0 9.7 162 1-162 275-439 (478)
52 PRK15363 pathogenicity island 99.7 1E-14 2.2E-19 100.0 15.1 106 10-115 28-134 (157)
53 COG5010 TadD Flp pilus assembl 99.7 1.3E-14 2.9E-19 106.1 16.5 141 4-144 88-228 (257)
54 KOG1129 TPR repeat-containing 99.7 4.3E-16 9.3E-21 117.2 8.9 150 1-150 309-461 (478)
55 PRK10049 pgaA outer membrane p 99.6 5E-14 1.1E-18 123.1 21.9 160 1-162 1-160 (765)
56 PLN03088 SGT1, suppressor of 99.6 3.8E-14 8.2E-19 113.0 16.0 113 19-131 5-117 (356)
57 PRK14574 hmsH outer membrane p 99.6 1E-13 2.2E-18 120.2 19.4 165 1-166 53-217 (822)
58 COG4783 Putative Zn-dependent 99.6 2.6E-13 5.6E-18 107.3 19.8 154 12-165 302-455 (484)
59 KOG2002 TPR-containing nuclear 99.6 1.9E-13 4.2E-18 115.5 17.7 165 1-165 218-389 (1018)
60 KOG1128 Uncharacterized conser 99.6 1.1E-13 2.3E-18 114.0 15.2 162 3-165 471-633 (777)
61 KOG0624 dsRNA-activated protei 99.6 2.8E-13 6E-18 102.9 16.0 155 1-155 57-260 (504)
62 KOG2076 RNA polymerase III tra 99.6 6.9E-13 1.5E-17 111.5 19.9 135 16-150 139-273 (895)
63 KOG0548 Molecular co-chaperone 99.6 1.9E-13 4.2E-18 108.9 15.7 148 18-165 300-473 (539)
64 KOG0550 Molecular chaperone (D 99.6 8.4E-14 1.8E-18 107.8 13.0 160 6-166 193-368 (486)
65 PLN03088 SGT1, suppressor of 99.6 2.1E-13 4.6E-18 108.7 15.8 115 53-167 5-119 (356)
66 KOG1173 Anaphase-promoting com 99.6 4E-13 8.7E-18 107.7 16.7 167 2-168 332-508 (611)
67 KOG1174 Anaphase-promoting com 99.5 7.7E-13 1.7E-17 102.7 17.0 165 1-166 319-519 (564)
68 COG4235 Cytochrome c biogenesi 99.5 1.7E-12 3.7E-17 97.5 18.4 136 31-166 137-275 (287)
69 KOG2003 TPR repeat-containing 99.5 7.3E-13 1.6E-17 104.2 17.0 163 3-165 545-707 (840)
70 cd05804 StaR_like StaR_like; a 99.5 3E-13 6.4E-18 108.6 15.4 147 2-149 63-217 (355)
71 KOG2002 TPR-containing nuclear 99.5 5.5E-13 1.2E-17 112.9 17.1 158 2-159 256-421 (1018)
72 COG2956 Predicted N-acetylgluc 99.5 1.4E-12 3.1E-17 98.2 16.9 149 1-150 54-246 (389)
73 KOG0548 Molecular co-chaperone 99.5 3.2E-13 6.8E-18 107.7 14.0 135 10-144 352-486 (539)
74 PRK15179 Vi polysaccharide bio 99.5 5.1E-13 1.1E-17 113.9 16.0 120 1-120 105-224 (694)
75 PRK14574 hmsH outer membrane p 99.5 1.7E-12 3.7E-17 112.7 19.1 145 10-154 28-172 (822)
76 KOG2076 RNA polymerase III tra 99.5 2.6E-12 5.6E-17 108.1 19.2 148 1-148 158-310 (895)
77 COG2956 Predicted N-acetylgluc 99.5 2.5E-12 5.4E-17 96.9 17.2 148 5-152 130-283 (389)
78 KOG4162 Predicted calmodulin-b 99.5 1.2E-12 2.5E-17 108.5 16.1 138 16-153 650-789 (799)
79 TIGR02795 tol_pal_ybgF tol-pal 99.5 1.5E-12 3.2E-17 87.6 14.0 103 17-119 3-111 (119)
80 TIGR02795 tol_pal_ybgF tol-pal 99.5 1.3E-12 2.9E-17 87.9 13.7 107 50-156 2-114 (119)
81 KOG3060 Uncharacterized conser 99.5 9.1E-12 2E-16 90.9 18.2 151 12-162 48-198 (289)
82 KOG1840 Kinesin light chain [C 99.5 7.2E-13 1.6E-17 108.3 13.8 148 1-148 218-397 (508)
83 PRK10747 putative protoheme IX 99.5 4.8E-12 1E-16 102.8 18.6 151 3-153 139-363 (398)
84 KOG2003 TPR repeat-containing 99.5 4.1E-13 9E-18 105.6 11.6 148 4-151 478-625 (840)
85 PRK02603 photosystem I assembl 99.5 2.9E-12 6.3E-17 92.1 14.9 120 13-152 32-154 (172)
86 TIGR00540 hemY_coli hemY prote 99.5 5.4E-12 1.2E-16 102.9 18.2 144 3-147 246-399 (409)
87 COG4235 Cytochrome c biogenesi 99.5 2.3E-12 5.1E-17 96.7 14.5 115 3-117 143-260 (287)
88 KOG0495 HAT repeat protein [RN 99.5 5E-12 1.1E-16 103.3 17.4 166 1-166 670-865 (913)
89 COG4783 Putative Zn-dependent 99.5 1.6E-11 3.4E-16 97.4 19.0 148 1-165 325-472 (484)
90 TIGR00540 hemY_coli hemY prote 99.5 1.2E-11 2.6E-16 100.9 18.9 163 2-165 173-383 (409)
91 cd00189 TPR Tetratricopeptide 99.5 2.3E-12 5E-17 82.6 12.0 97 19-115 3-99 (100)
92 cd00189 TPR Tetratricopeptide 99.5 2.2E-12 4.8E-17 82.7 11.7 99 52-150 2-100 (100)
93 CHL00033 ycf3 photosystem I as 99.5 4.7E-12 1E-16 90.7 14.4 122 31-152 14-154 (168)
94 KOG0495 HAT repeat protein [RN 99.5 5.6E-12 1.2E-16 103.0 15.9 148 4-152 606-753 (913)
95 PRK10153 DNA-binding transcrip 99.4 1.6E-11 3.4E-16 102.0 18.7 140 12-152 333-487 (517)
96 PRK15331 chaperone protein Sic 99.4 4.2E-12 9.1E-17 87.6 12.6 122 45-167 32-153 (165)
97 KOG1127 TPR repeat-containing 99.4 1.8E-12 3.9E-17 110.0 12.3 152 1-152 477-630 (1238)
98 PF13525 YfiO: Outer membrane 99.4 5.6E-11 1.2E-15 87.6 19.0 153 15-167 4-190 (203)
99 PF13414 TPR_11: TPR repeat; P 99.4 9.1E-13 2E-17 79.8 7.7 66 16-81 3-69 (69)
100 PF09976 TPR_21: Tetratricopep 99.4 3.3E-11 7.2E-16 84.1 16.6 126 19-145 14-145 (145)
101 PF13414 TPR_11: TPR repeat; P 99.4 9.7E-13 2.1E-17 79.6 7.7 66 50-115 3-69 (69)
102 cd05804 StaR_like StaR_like; a 99.4 3.4E-11 7.4E-16 96.7 18.9 147 3-150 27-180 (355)
103 PRK11906 transcriptional regul 99.4 1.4E-11 3E-16 98.1 16.1 144 1-144 277-433 (458)
104 PRK10866 outer membrane biogen 99.4 1.2E-10 2.7E-15 87.8 20.7 154 14-167 30-224 (243)
105 CHL00033 ycf3 photosystem I as 99.4 1.6E-11 3.4E-16 88.0 15.2 103 16-118 35-154 (168)
106 KOG0624 dsRNA-activated protei 99.4 1.2E-11 2.6E-16 94.1 14.7 165 2-166 209-389 (504)
107 KOG1840 Kinesin light chain [C 99.4 1.7E-11 3.8E-16 100.3 15.8 148 1-148 260-439 (508)
108 PRK15331 chaperone protein Sic 99.4 1.4E-11 3.1E-16 85.0 13.0 108 9-117 30-137 (165)
109 PRK10747 putative protoheme IX 99.4 2.4E-11 5.2E-16 98.8 16.6 133 12-148 259-391 (398)
110 PRK11906 transcriptional regul 99.4 4.2E-11 9.2E-16 95.4 16.8 132 20-151 259-405 (458)
111 KOG1156 N-terminal acetyltrans 99.4 2.6E-11 5.7E-16 98.9 15.9 146 3-148 28-173 (700)
112 PRK14720 transcript cleavage f 99.4 2.6E-11 5.6E-16 104.8 15.9 134 12-148 27-179 (906)
113 PF09295 ChAPs: ChAPs (Chs5p-A 99.4 1.3E-10 2.8E-15 92.8 18.8 121 21-144 174-294 (395)
114 PF12895 Apc3: Anaphase-promot 99.4 2.6E-12 5.6E-17 80.9 7.1 80 29-109 2-83 (84)
115 PRK10153 DNA-binding transcrip 99.4 2.6E-11 5.7E-16 100.7 14.2 118 1-119 361-488 (517)
116 KOG0543 FKBP-type peptidyl-pro 99.4 6.4E-11 1.4E-15 92.2 15.3 133 17-149 209-357 (397)
117 KOG4162 Predicted calmodulin-b 99.4 1.6E-11 3.5E-16 101.9 12.5 116 3-118 671-788 (799)
118 PF13432 TPR_16: Tetratricopep 99.3 6.9E-12 1.5E-16 74.9 7.3 62 56-117 3-64 (65)
119 PF12895 Apc3: Anaphase-promot 99.3 5.8E-12 1.3E-16 79.3 7.3 81 63-144 2-84 (84)
120 PF13432 TPR_16: Tetratricopep 99.3 1.1E-11 2.3E-16 74.1 8.0 64 21-84 2-65 (65)
121 PRK10803 tol-pal system protei 99.3 1.7E-10 3.7E-15 87.7 16.1 102 51-152 143-251 (263)
122 KOG1174 Anaphase-promoting com 99.3 9.9E-11 2.1E-15 91.2 14.8 154 6-159 222-409 (564)
123 PRK10803 tol-pal system protei 99.3 1.8E-10 4E-15 87.5 15.7 105 16-120 142-253 (263)
124 PRK14720 transcript cleavage f 99.3 1.9E-10 4.1E-15 99.6 16.7 152 1-155 50-260 (906)
125 PF09976 TPR_21: Tetratricopep 99.3 1.3E-10 2.8E-15 81.1 13.0 108 3-111 32-145 (145)
126 KOG1127 TPR repeat-containing 99.3 3.2E-11 6.9E-16 102.7 11.3 150 1-150 511-662 (1238)
127 PF04733 Coatomer_E: Coatomer 99.3 3.6E-10 7.7E-15 87.4 16.1 153 4-156 117-274 (290)
128 PRK10866 outer membrane biogen 99.3 2.1E-09 4.5E-14 81.2 18.8 143 1-143 51-237 (243)
129 PF12569 NARP1: NMDA receptor- 99.3 2.2E-09 4.7E-14 89.0 20.0 155 2-156 24-266 (517)
130 PF12688 TPR_5: Tetratrico pep 99.2 6.1E-10 1.3E-14 74.1 12.9 96 17-112 2-103 (120)
131 KOG0543 FKBP-type peptidyl-pro 99.2 2.3E-10 5E-15 89.2 12.4 115 53-167 211-340 (397)
132 PRK02603 photosystem I assembl 99.2 3.4E-10 7.3E-15 81.4 12.5 98 48-145 33-133 (172)
133 KOG1128 Uncharacterized conser 99.2 2.2E-10 4.8E-15 94.8 10.8 134 16-150 424-585 (777)
134 KOG0550 Molecular chaperone (D 99.2 5E-10 1.1E-14 87.2 11.6 136 16-151 169-320 (486)
135 PF14559 TPR_19: Tetratricopep 99.2 1.6E-10 3.5E-15 69.6 7.2 65 27-91 2-66 (68)
136 KOG1156 N-terminal acetyltrans 99.2 1.2E-09 2.5E-14 89.6 14.0 139 17-155 8-146 (700)
137 PF13525 YfiO: Outer membrane 99.2 5.3E-09 1.1E-13 77.1 16.4 138 1-138 24-198 (203)
138 KOG3785 Uncharacterized conser 99.2 1.8E-09 3.9E-14 82.9 13.9 142 17-158 58-225 (557)
139 KOG4340 Uncharacterized conser 99.2 8.7E-10 1.9E-14 82.8 11.6 147 1-147 29-207 (459)
140 PF14559 TPR_19: Tetratricopep 99.1 2E-10 4.4E-15 69.2 6.6 66 61-126 2-67 (68)
141 PF13371 TPR_9: Tetratricopept 99.1 6.1E-10 1.3E-14 68.1 8.5 66 23-88 2-67 (73)
142 KOG4648 Uncharacterized conser 99.1 4.6E-10 9.9E-15 85.8 9.5 108 19-126 100-207 (536)
143 PF12688 TPR_5: Tetratrico pep 99.1 4.9E-09 1.1E-13 69.8 13.4 97 50-146 1-103 (120)
144 COG1729 Uncharacterized protei 99.1 5.4E-09 1.2E-13 78.0 14.6 103 19-121 144-252 (262)
145 PF09295 ChAPs: ChAPs (Chs5p-A 99.1 2.1E-09 4.7E-14 85.9 13.3 109 1-112 188-296 (395)
146 PF13371 TPR_9: Tetratricopept 99.1 9E-10 1.9E-14 67.3 8.3 68 57-124 2-69 (73)
147 KOG4234 TPR repeat-containing 99.1 3.7E-09 8.1E-14 74.9 11.9 99 20-118 99-202 (271)
148 PF13512 TPR_18: Tetratricopep 99.1 1.1E-08 2.3E-13 69.4 13.1 85 15-99 9-99 (142)
149 KOG4234 TPR repeat-containing 99.1 3.9E-09 8.5E-14 74.8 10.8 111 53-163 98-213 (271)
150 PF12569 NARP1: NMDA receptor- 99.0 2.3E-08 5E-13 83.0 16.9 134 17-150 195-337 (517)
151 PF04733 Coatomer_E: Coatomer 99.0 4.3E-09 9.3E-14 81.5 11.9 139 15-158 101-241 (290)
152 PF14938 SNAP: Soluble NSF att 99.0 1.2E-08 2.6E-13 79.2 14.1 167 2-169 55-249 (282)
153 KOG4648 Uncharacterized conser 99.0 1.5E-09 3.2E-14 83.0 8.3 114 53-166 100-213 (536)
154 COG4785 NlpI Lipoprotein NlpI, 99.0 1.9E-08 4.1E-13 72.3 13.4 154 14-168 63-216 (297)
155 COG4105 ComL DNA uptake lipopr 99.0 2.5E-07 5.4E-12 68.6 19.3 153 15-167 33-216 (254)
156 PF13512 TPR_18: Tetratricopep 99.0 3.5E-08 7.7E-13 66.9 13.7 108 49-156 9-137 (142)
157 PLN03098 LPA1 LOW PSII ACCUMUL 99.0 1.6E-08 3.4E-13 80.9 13.2 68 12-79 71-141 (453)
158 COG1729 Uncharacterized protei 99.0 4.1E-08 8.9E-13 73.3 14.4 101 53-153 144-250 (262)
159 COG3071 HemY Uncharacterized e 99.0 2E-07 4.3E-12 72.7 18.1 157 5-162 141-371 (400)
160 COG4785 NlpI Lipoprotein NlpI, 99.0 3.6E-08 7.7E-13 70.9 13.0 145 3-148 86-267 (297)
161 PLN03218 maturation of RBCL 1; 99.0 1.5E-07 3.2E-12 84.7 19.7 141 3-145 600-746 (1060)
162 KOG2376 Signal recognition par 99.0 4.9E-08 1.1E-12 79.5 15.1 140 4-147 34-204 (652)
163 PLN03098 LPA1 LOW PSII ACCUMUL 99.0 6.5E-09 1.4E-13 83.0 9.8 70 45-114 70-142 (453)
164 PLN03218 maturation of RBCL 1; 98.9 3.7E-07 7.9E-12 82.2 21.5 143 3-147 493-643 (1060)
165 COG4700 Uncharacterized protei 98.9 3.7E-07 8E-12 64.3 16.7 129 16-145 89-220 (251)
166 COG3071 HemY Uncharacterized e 98.9 7.7E-07 1.7E-11 69.5 19.9 144 3-147 174-390 (400)
167 KOG1915 Cell cycle control pro 98.9 1.8E-07 4E-12 74.6 16.6 148 1-150 92-239 (677)
168 KOG2796 Uncharacterized conser 98.9 1.1E-07 2.4E-12 70.4 14.2 150 16-165 177-333 (366)
169 PLN03081 pentatricopeptide (PP 98.9 1.4E-07 3.1E-12 82.5 16.5 135 15-152 390-528 (697)
170 PF05843 Suf: Suppressor of fo 98.9 2.3E-07 5E-12 71.9 15.2 136 17-152 2-141 (280)
171 KOG2376 Signal recognition par 98.9 4.9E-07 1.1E-11 73.9 17.2 147 4-153 61-259 (652)
172 COG0457 NrfG FOG: TPR repeat [ 98.8 8.5E-07 1.8E-11 66.0 17.7 147 4-150 81-234 (291)
173 PF13424 TPR_12: Tetratricopep 98.8 5.6E-09 1.2E-13 64.6 4.7 66 13-78 2-74 (78)
174 PF06552 TOM20_plant: Plant sp 98.8 9.1E-08 2E-12 67.0 10.6 65 32-96 7-81 (186)
175 PF13424 TPR_12: Tetratricopep 98.8 7.7E-09 1.7E-13 64.0 4.9 64 84-147 5-75 (78)
176 PLN03081 pentatricopeptide (PP 98.8 2.6E-07 5.6E-12 80.9 15.9 145 2-150 345-493 (697)
177 PLN03077 Protein ECB2; Provisi 98.8 5.3E-07 1.2E-11 80.7 18.0 144 13-159 551-698 (857)
178 KOG4555 TPR repeat-containing 98.8 7.1E-07 1.5E-11 59.1 13.6 91 23-113 50-144 (175)
179 COG0457 NrfG FOG: TPR repeat [ 98.8 1.4E-06 3E-11 64.8 17.6 148 3-150 44-199 (291)
180 PF06552 TOM20_plant: Plant sp 98.8 8.8E-08 1.9E-12 67.1 9.9 97 66-162 7-124 (186)
181 COG4700 Uncharacterized protei 98.8 2E-06 4.3E-11 60.7 16.4 130 21-151 61-193 (251)
182 KOG4642 Chaperone-dependent E3 98.8 1.6E-07 3.6E-12 68.4 11.2 96 18-113 12-107 (284)
183 PLN03077 Protein ECB2; Provisi 98.8 4.9E-07 1.1E-11 81.0 16.8 143 1-146 573-719 (857)
184 KOG4555 TPR repeat-containing 98.8 2.7E-07 5.9E-12 61.0 11.1 98 53-150 46-147 (175)
185 PF14938 SNAP: Soluble NSF att 98.8 1.2E-07 2.5E-12 73.7 10.8 132 16-148 35-185 (282)
186 KOG1130 Predicted G-alpha GTPa 98.8 2.6E-08 5.6E-13 78.1 6.8 133 16-148 195-345 (639)
187 KOG1915 Cell cycle control pro 98.7 1E-06 2.2E-11 70.5 14.9 145 5-150 62-206 (677)
188 KOG4642 Chaperone-dependent E3 98.7 6E-08 1.3E-12 70.7 7.0 94 55-148 15-108 (284)
189 KOG1130 Predicted G-alpha GTPa 98.7 5.7E-08 1.2E-12 76.3 7.2 146 2-147 37-264 (639)
190 KOG3785 Uncharacterized conser 98.7 5.2E-07 1.1E-11 69.7 11.2 127 24-150 30-183 (557)
191 KOG1070 rRNA processing protei 98.7 2.3E-06 4.9E-11 76.4 16.3 143 4-147 1519-1663(1710)
192 KOG1941 Acetylcholine receptor 98.6 8.9E-07 1.9E-11 68.6 12.0 145 17-161 123-289 (518)
193 PF13428 TPR_14: Tetratricopep 98.6 1.2E-07 2.5E-12 51.5 5.2 38 53-90 4-41 (44)
194 COG4105 ComL DNA uptake lipopr 98.6 1.8E-05 3.8E-10 59.0 18.0 150 1-151 53-237 (254)
195 KOG0376 Serine-threonine phosp 98.6 1.4E-07 2.9E-12 75.5 6.8 110 19-128 7-116 (476)
196 KOG1070 rRNA processing protei 98.6 5.1E-06 1.1E-10 74.2 16.8 148 3-150 1445-1632(1710)
197 PF13428 TPR_14: Tetratricopep 98.6 1.6E-07 3.5E-12 50.9 5.1 43 16-58 1-43 (44)
198 KOG3081 Vesicle coat complex C 98.6 2.9E-05 6.2E-10 58.0 17.6 88 65-152 188-276 (299)
199 PF13431 TPR_17: Tetratricopep 98.6 8.8E-08 1.9E-12 48.6 3.3 33 4-36 1-33 (34)
200 KOG2610 Uncharacterized conser 98.5 5.1E-06 1.1E-10 63.9 13.6 142 4-145 125-274 (491)
201 KOG2796 Uncharacterized conser 98.5 1.2E-05 2.6E-10 59.9 14.1 116 2-117 197-319 (366)
202 PF04184 ST7: ST7 protein; In 98.5 1.2E-05 2.6E-10 65.1 15.0 147 2-150 188-378 (539)
203 KOG0545 Aryl-hydrocarbon recep 98.5 4.5E-06 9.7E-11 61.4 11.3 100 51-150 179-296 (329)
204 PF05843 Suf: Suppressor of fo 98.5 8.4E-06 1.8E-10 63.2 13.3 119 2-120 21-143 (280)
205 PRK04841 transcriptional regul 98.4 1.8E-05 3.8E-10 71.6 16.9 148 2-149 472-643 (903)
206 KOG0545 Aryl-hydrocarbon recep 98.4 1.2E-05 2.5E-10 59.3 12.6 105 16-120 178-300 (329)
207 KOG4340 Uncharacterized conser 98.4 5.7E-06 1.2E-10 62.7 11.2 124 26-149 20-175 (459)
208 KOG3081 Vesicle coat complex C 98.4 0.0001 2.2E-09 55.1 17.4 140 17-163 109-252 (299)
209 KOG0376 Serine-threonine phosp 98.4 5.2E-07 1.1E-11 72.3 5.8 112 55-166 9-120 (476)
210 PF13431 TPR_17: Tetratricopep 98.4 2.8E-07 6.1E-12 46.8 2.9 26 76-101 5-30 (34)
211 KOG2047 mRNA splicing factor [ 98.4 2.2E-05 4.8E-10 65.3 14.6 146 3-148 368-541 (835)
212 KOG2053 Mitochondrial inherita 98.4 1.8E-05 3.8E-10 68.0 14.0 136 27-163 20-156 (932)
213 KOG1586 Protein required for f 98.3 0.00018 3.9E-09 52.8 16.8 150 18-168 76-247 (288)
214 PRK04841 transcriptional regul 98.3 6.6E-05 1.4E-09 67.9 17.1 133 17-149 453-604 (903)
215 KOG0551 Hsp90 co-chaperone CNS 98.3 1.1E-05 2.3E-10 62.0 9.5 101 16-116 81-185 (390)
216 KOG2610 Uncharacterized conser 98.3 3.9E-05 8.5E-10 59.2 12.4 122 23-144 110-235 (491)
217 KOG2053 Mitochondrial inherita 98.2 4.9E-05 1.1E-09 65.4 13.9 117 2-119 29-145 (932)
218 KOG2471 TPR repeat-containing 98.2 6.6E-06 1.4E-10 66.2 8.3 120 12-131 236-382 (696)
219 PF00515 TPR_1: Tetratricopept 98.2 3E-06 6.5E-11 43.0 4.4 32 17-48 2-33 (34)
220 KOG2047 mRNA splicing factor [ 98.2 0.00012 2.5E-09 61.2 15.4 163 2-166 407-596 (835)
221 COG3118 Thioredoxin domain-con 98.2 0.00017 3.7E-09 54.8 15.2 134 16-150 134-268 (304)
222 PF00515 TPR_1: Tetratricopept 98.2 3E-06 6.6E-11 43.0 4.2 31 52-82 3-33 (34)
223 PF07719 TPR_2: Tetratricopept 98.2 5.2E-06 1.1E-10 42.1 5.1 32 17-48 2-33 (34)
224 PF07719 TPR_2: Tetratricopept 98.2 4.1E-06 9E-11 42.5 4.5 31 52-82 3-33 (34)
225 PF04184 ST7: ST7 protein; In 98.2 6E-05 1.3E-09 61.2 13.0 127 18-146 170-323 (539)
226 PF08424 NRDE-2: NRDE-2, neces 98.2 0.00052 1.1E-08 54.4 18.3 146 3-148 6-184 (321)
227 PF10300 DUF3808: Protein of u 98.1 0.0001 2.3E-09 61.3 14.0 121 29-149 246-378 (468)
228 PF13281 DUF4071: Domain of un 98.1 0.00098 2.1E-08 53.2 18.1 137 13-150 176-337 (374)
229 COG2976 Uncharacterized protei 98.1 0.0014 3E-08 47.0 16.8 111 52-164 91-204 (207)
230 PF03704 BTAD: Bacterial trans 98.1 0.0003 6.5E-09 49.0 13.4 114 21-147 11-125 (146)
231 KOG1308 Hsp70-interacting prot 98.1 4.1E-06 8.9E-11 64.4 4.2 125 20-145 118-242 (377)
232 PF10300 DUF3808: Protein of u 98.1 8.2E-05 1.8E-09 61.9 12.1 112 2-113 253-376 (468)
233 KOG0551 Hsp90 co-chaperone CNS 98.1 2.9E-05 6.2E-10 59.7 8.4 98 51-148 82-183 (390)
234 PF03704 BTAD: Bacterial trans 98.1 0.00032 7E-09 48.8 13.3 63 50-112 62-124 (146)
235 KOG1586 Protein required for f 98.0 0.00045 9.8E-09 50.8 13.2 134 16-150 34-186 (288)
236 PF04910 Tcf25: Transcriptiona 98.0 0.0011 2.3E-08 53.4 16.7 145 6-150 30-225 (360)
237 KOG1941 Acetylcholine receptor 98.0 0.00012 2.5E-09 57.2 10.2 133 16-148 83-236 (518)
238 COG3118 Thioredoxin domain-con 97.9 0.00072 1.6E-08 51.5 13.6 136 1-137 153-291 (304)
239 KOG1308 Hsp70-interacting prot 97.9 6.2E-06 1.3E-10 63.5 2.0 94 57-150 121-214 (377)
240 KOG1585 Protein required for f 97.9 0.002 4.3E-08 47.9 14.5 146 23-168 78-241 (308)
241 KOG2471 TPR repeat-containing 97.9 0.00021 4.4E-09 58.0 10.2 141 19-159 209-376 (696)
242 KOG1585 Protein required for f 97.8 0.0019 4.1E-08 48.0 13.8 130 16-145 31-177 (308)
243 COG3898 Uncharacterized membra 97.8 0.0063 1.4E-07 48.4 17.4 127 25-151 163-362 (531)
244 KOG2396 HAT (Half-A-TPR) repea 97.8 0.00063 1.4E-08 55.3 12.0 91 35-125 90-181 (568)
245 PF13181 TPR_8: Tetratricopept 97.8 5.8E-05 1.3E-09 38.1 4.2 31 17-47 2-32 (34)
246 PF02259 FAT: FAT domain; Int 97.8 0.0033 7.2E-08 50.5 16.0 139 12-150 142-341 (352)
247 COG2976 Uncharacterized protei 97.7 0.002 4.4E-08 46.2 12.4 111 6-117 76-192 (207)
248 PF13181 TPR_8: Tetratricopept 97.7 0.00011 2.5E-09 37.0 4.6 30 120-149 3-32 (34)
249 KOG3617 WD40 and TPR repeat-co 97.6 0.0009 1.9E-08 57.8 10.8 81 52-145 914-994 (1416)
250 PRK10941 hypothetical protein; 97.6 0.0016 3.5E-08 49.9 11.3 69 54-122 185-253 (269)
251 PF14561 TPR_20: Tetratricopep 97.6 0.0016 3.4E-08 41.2 9.2 44 4-47 10-53 (90)
252 KOG1550 Extracellular protein 97.6 0.0085 1.8E-07 51.3 16.4 139 4-148 234-394 (552)
253 COG3898 Uncharacterized membra 97.6 0.011 2.5E-07 47.0 15.3 141 3-147 250-392 (531)
254 KOG2396 HAT (Half-A-TPR) repea 97.6 0.0022 4.7E-08 52.4 11.7 94 67-160 88-182 (568)
255 PF09613 HrpB1_HrpK: Bacterial 97.6 0.0044 9.4E-08 43.2 11.7 110 52-163 12-121 (160)
256 PF13281 DUF4071: Domain of un 97.5 0.0058 1.3E-07 48.9 13.9 118 15-133 140-274 (374)
257 PF08424 NRDE-2: NRDE-2, neces 97.5 0.0095 2.1E-07 47.3 15.3 112 37-148 6-132 (321)
258 PF09613 HrpB1_HrpK: Bacterial 97.5 0.0039 8.4E-08 43.5 11.3 86 16-101 10-95 (160)
259 PF04781 DUF627: Protein of un 97.5 0.0031 6.6E-08 41.0 10.0 103 22-147 2-107 (111)
260 KOG3824 Huntingtin interacting 97.5 0.0006 1.3E-08 52.3 7.7 75 18-92 118-192 (472)
261 PRK10941 hypothetical protein; 97.5 0.0029 6.3E-08 48.5 11.5 82 86-168 183-264 (269)
262 PF13174 TPR_6: Tetratricopept 97.5 0.00027 5.9E-09 35.2 4.1 31 18-48 2-32 (33)
263 KOG1914 mRNA cleavage and poly 97.5 0.012 2.7E-07 48.7 15.2 139 6-146 10-165 (656)
264 KOG4507 Uncharacterized conser 97.5 0.00095 2.1E-08 55.5 8.8 107 57-163 614-721 (886)
265 PF14853 Fis1_TPR_C: Fis1 C-te 97.5 0.0011 2.5E-08 37.1 6.6 47 119-165 2-48 (53)
266 PF14561 TPR_20: Tetratricopep 97.4 0.005 1.1E-07 38.9 9.9 65 36-100 8-74 (90)
267 COG0790 FOG: TPR repeat, SEL1 97.4 0.038 8.2E-07 43.2 17.4 132 12-148 105-267 (292)
268 PF13176 TPR_7: Tetratricopept 97.4 0.00037 7.9E-09 35.7 4.0 25 19-43 2-26 (36)
269 PF13176 TPR_7: Tetratricopept 97.3 0.00045 9.9E-09 35.4 3.7 24 53-76 2-25 (36)
270 KOG3824 Huntingtin interacting 97.3 0.0014 2.9E-08 50.4 7.4 72 55-126 121-192 (472)
271 PF14853 Fis1_TPR_C: Fis1 C-te 97.3 0.0017 3.8E-08 36.3 6.0 29 56-84 7-35 (53)
272 KOG0530 Protein farnesyltransf 97.3 0.009 2E-07 45.0 11.2 163 2-164 63-233 (318)
273 PRK15180 Vi polysaccharide bio 97.3 0.0035 7.6E-08 51.1 9.7 125 26-150 299-423 (831)
274 PF04781 DUF627: Protein of un 97.2 0.0063 1.4E-07 39.5 8.8 32 56-87 2-33 (111)
275 KOG4507 Uncharacterized conser 97.2 0.0053 1.1E-07 51.3 10.3 114 6-119 203-318 (886)
276 KOG1914 mRNA cleavage and poly 97.2 0.085 1.8E-06 44.0 16.9 116 32-147 347-464 (656)
277 TIGR02561 HrpB1_HrpK type III 97.1 0.018 3.8E-07 39.6 10.2 83 53-135 13-95 (153)
278 COG4976 Predicted methyltransf 97.1 0.0013 2.8E-08 48.3 5.0 61 24-84 3-63 (287)
279 smart00028 TPR Tetratricopepti 97.0 0.0017 3.7E-08 31.5 4.1 21 57-77 8-28 (34)
280 smart00028 TPR Tetratricopepti 97.0 0.0015 3.3E-08 31.7 3.8 30 86-115 3-32 (34)
281 KOG0530 Protein farnesyltransf 97.0 0.096 2.1E-06 39.7 14.6 124 25-148 52-177 (318)
282 COG5191 Uncharacterized conser 97.0 0.0028 6.1E-08 48.8 6.2 88 73-160 96-184 (435)
283 COG3914 Spy Predicted O-linked 97.0 0.03 6.4E-07 46.9 12.3 116 12-127 61-185 (620)
284 COG5191 Uncharacterized conser 96.9 0.0033 7.1E-08 48.4 6.3 86 41-126 98-184 (435)
285 COG3914 Spy Predicted O-linked 96.9 0.054 1.2E-06 45.5 13.6 123 30-152 45-176 (620)
286 KOG1310 WD40 repeat protein [G 96.9 0.0056 1.2E-07 50.5 7.6 103 15-117 373-478 (758)
287 KOG1550 Extracellular protein 96.9 0.099 2.1E-06 44.9 15.5 139 2-146 269-425 (552)
288 KOG3617 WD40 and TPR repeat-co 96.8 0.057 1.2E-06 47.3 13.5 131 14-144 910-1106(1416)
289 COG0790 FOG: TPR repeat, SEL1 96.8 0.17 3.6E-06 39.6 17.2 131 15-149 72-222 (292)
290 KOG2422 Uncharacterized conser 96.7 0.15 3.2E-06 42.9 14.7 138 12-150 280-451 (665)
291 KOG4814 Uncharacterized conser 96.7 0.041 9E-07 46.6 11.5 97 52-148 356-458 (872)
292 KOG3364 Membrane protein invol 96.7 0.098 2.1E-06 35.4 11.2 81 85-165 33-118 (149)
293 KOG1258 mRNA processing protei 96.7 0.28 6.1E-06 41.4 16.1 124 16-139 297-421 (577)
294 KOG3364 Membrane protein invol 96.7 0.1 2.2E-06 35.3 11.1 77 49-125 31-112 (149)
295 TIGR02561 HrpB1_HrpK type III 96.7 0.12 2.5E-06 35.7 13.5 84 17-100 11-94 (153)
296 KOG4814 Uncharacterized conser 96.7 0.035 7.7E-07 47.0 10.7 96 18-113 356-457 (872)
297 PF10602 RPN7: 26S proteasome 96.6 0.081 1.8E-06 38.1 11.5 98 51-148 37-143 (177)
298 COG4976 Predicted methyltransf 96.6 0.0036 7.8E-08 46.1 4.4 60 58-117 3-62 (287)
299 PF10602 RPN7: 26S proteasome 96.6 0.07 1.5E-06 38.4 10.7 99 16-114 36-143 (177)
300 PF07079 DUF1347: Protein of u 96.6 0.17 3.7E-06 41.4 13.6 126 16-144 379-521 (549)
301 PF12968 DUF3856: Domain of Un 96.6 0.069 1.5E-06 35.2 9.4 62 86-147 57-129 (144)
302 KOG2300 Uncharacterized conser 96.5 0.26 5.6E-06 40.7 14.6 131 15-148 366-515 (629)
303 PF02259 FAT: FAT domain; Int 96.5 0.21 4.6E-06 40.0 14.6 119 47-165 143-305 (352)
304 KOG2300 Uncharacterized conser 96.5 0.36 7.7E-06 40.0 15.0 128 21-148 328-475 (629)
305 KOG1310 WD40 repeat protein [G 96.4 0.015 3.2E-07 48.1 7.1 90 61-150 385-477 (758)
306 KOG1839 Uncharacterized protei 96.4 0.034 7.4E-07 50.7 9.8 138 11-148 968-1129(1236)
307 PF08631 SPO22: Meiosis protei 96.2 0.43 9.4E-06 37.1 16.8 28 18-45 37-65 (278)
308 PF07079 DUF1347: Protein of u 96.2 0.43 9.3E-06 39.2 13.8 131 17-147 7-157 (549)
309 COG2912 Uncharacterized conser 96.2 0.066 1.4E-06 40.8 8.9 73 53-125 184-256 (269)
310 PF13374 TPR_10: Tetratricopep 96.1 0.022 4.7E-07 29.8 4.6 30 119-148 3-32 (42)
311 PF09986 DUF2225: Uncharacteri 96.0 0.12 2.5E-06 38.5 9.7 65 16-80 118-195 (214)
312 PF13374 TPR_10: Tetratricopep 96.0 0.026 5.5E-07 29.5 4.6 29 17-45 3-31 (42)
313 KOG0985 Vesicle coat protein c 95.9 0.51 1.1E-05 42.8 14.1 60 14-78 1102-1161(1666)
314 PF04910 Tcf25: Transcriptiona 95.9 0.27 5.8E-06 39.8 11.8 104 41-144 31-165 (360)
315 PRK15180 Vi polysaccharide bio 95.9 0.036 7.8E-07 45.6 6.7 113 5-117 312-424 (831)
316 KOG1258 mRNA processing protei 95.8 1 2.2E-05 38.2 18.6 152 4-155 319-478 (577)
317 PF09986 DUF2225: Uncharacteri 95.8 0.23 5.1E-06 36.9 10.4 86 63-148 90-195 (214)
318 PF12968 DUF3856: Domain of Un 95.8 0.32 7E-06 32.2 12.6 96 18-113 9-129 (144)
319 COG2912 Uncharacterized conser 95.7 0.15 3.2E-06 39.0 9.0 68 87-154 184-251 (269)
320 COG5107 RNA14 Pre-mRNA 3'-end 95.6 1 2.2E-05 37.2 13.6 142 5-147 31-190 (660)
321 KOG0529 Protein geranylgeranyl 95.5 1.1 2.3E-05 36.4 13.6 133 31-163 90-240 (421)
322 PF07720 TPR_3: Tetratricopept 95.5 0.08 1.7E-06 26.9 5.0 30 18-47 3-34 (36)
323 PF12862 Apc5: Anaphase-promot 95.4 0.18 4E-06 32.0 7.7 27 87-113 44-70 (94)
324 KOG0985 Vesicle coat protein c 95.4 1.7 3.6E-05 39.8 15.2 61 48-113 1102-1162(1666)
325 COG3629 DnrI DNA-binding trans 95.3 0.18 3.8E-06 39.0 8.3 80 32-113 137-216 (280)
326 PF12862 Apc5: Anaphase-promot 95.2 0.16 3.5E-06 32.3 6.9 57 25-81 7-72 (94)
327 KOG2041 WD40 repeat protein [G 95.1 0.47 1E-05 41.2 11.1 132 9-143 686-877 (1189)
328 PF07720 TPR_3: Tetratricopept 95.1 0.097 2.1E-06 26.6 4.5 21 52-72 3-23 (36)
329 PF04053 Coatomer_WDAD: Coatom 95.1 1.1 2.4E-05 37.3 13.0 76 19-110 298-373 (443)
330 PF15015 NYD-SP12_N: Spermatog 95.0 0.31 6.8E-06 39.5 9.2 88 23-110 183-288 (569)
331 PF10373 EST1_DNA_bind: Est1 D 94.9 0.19 4E-06 39.0 7.9 62 35-96 1-62 (278)
332 PF15015 NYD-SP12_N: Spermatog 94.9 0.61 1.3E-05 38.0 10.4 56 87-142 231-286 (569)
333 PF08631 SPO22: Meiosis protei 94.8 1.5 3.3E-05 34.1 17.6 123 16-149 12-152 (278)
334 KOG2581 26S proteasome regulat 94.7 1.6 3.4E-05 35.5 12.3 128 23-150 133-279 (493)
335 PF07721 TPR_4: Tetratricopept 94.7 0.055 1.2E-06 25.2 2.8 21 19-39 4-24 (26)
336 KOG2581 26S proteasome regulat 94.7 1.1 2.3E-05 36.4 11.2 102 16-117 169-280 (493)
337 COG4649 Uncharacterized protei 94.6 1.1 2.5E-05 31.9 16.3 124 23-146 65-195 (221)
338 PF10373 EST1_DNA_bind: Est1 D 94.6 0.27 5.9E-06 38.0 8.1 62 1-62 1-62 (278)
339 PF07721 TPR_4: Tetratricopept 94.5 0.074 1.6E-06 24.7 3.1 21 53-73 4-24 (26)
340 PF04053 Coatomer_WDAD: Coatom 94.5 0.72 1.6E-05 38.5 10.6 105 25-146 270-375 (443)
341 COG3629 DnrI DNA-binding trans 94.5 0.4 8.6E-06 37.1 8.4 80 66-147 137-216 (280)
342 KOG1839 Uncharacterized protei 94.5 0.42 9.1E-06 44.1 9.7 133 16-148 932-1087(1236)
343 PRK13184 pknD serine/threonine 94.4 1.4 3.1E-05 40.2 12.8 146 22-169 481-641 (932)
344 KOG1464 COP9 signalosome, subu 94.2 1.3 2.7E-05 34.1 10.4 148 1-148 46-261 (440)
345 PF11207 DUF2989: Protein of u 94.2 1.1 2.4E-05 32.7 9.8 72 66-138 122-198 (203)
346 PF10345 Cohesin_load: Cohesin 94.2 3.6 7.7E-05 36.1 16.7 144 1-145 40-206 (608)
347 PF09670 Cas_Cas02710: CRISPR- 94.0 2.8 6.1E-05 34.3 12.9 130 18-148 133-271 (379)
348 PRK13184 pknD serine/threonine 93.9 0.85 1.8E-05 41.6 10.5 101 55-156 480-590 (932)
349 PF10579 Rapsyn_N: Rapsyn N-te 93.9 0.53 1.1E-05 28.6 6.4 21 62-82 18-38 (80)
350 PF11207 DUF2989: Protein of u 93.9 0.49 1.1E-05 34.5 7.4 78 26-104 116-198 (203)
351 COG5107 RNA14 Pre-mRNA 3'-end 93.9 3.3 7.1E-05 34.4 14.8 135 17-151 398-535 (660)
352 COG4455 ImpE Protein of avirul 93.7 0.91 2E-05 33.7 8.5 61 24-84 9-69 (273)
353 KOG0529 Protein geranylgeranyl 93.7 3.2 6.9E-05 33.8 14.0 136 28-163 40-194 (421)
354 smart00386 HAT HAT (Half-A-TPR 93.7 0.21 4.5E-06 24.1 4.0 22 67-88 4-25 (33)
355 KOG3616 Selective LIM binding 93.6 0.98 2.1E-05 39.7 9.8 60 17-76 662-732 (1636)
356 PF11817 Foie-gras_1: Foie gra 93.4 1.1 2.3E-05 34.3 9.1 61 51-111 179-245 (247)
357 PF10516 SHNi-TPR: SHNi-TPR; 93.3 0.2 4.4E-06 25.8 3.5 27 121-147 4-30 (38)
358 PF10516 SHNi-TPR: SHNi-TPR; 93.3 0.21 4.6E-06 25.7 3.5 29 85-113 2-30 (38)
359 KOG3807 Predicted membrane pro 93.3 3.4 7.4E-05 32.8 14.5 146 3-150 205-394 (556)
360 smart00386 HAT HAT (Half-A-TPR 93.2 0.33 7.1E-06 23.4 4.2 30 30-59 1-30 (33)
361 KOG0546 HSP90 co-chaperone CPR 93.0 0.22 4.8E-06 39.3 4.9 104 21-124 227-349 (372)
362 COG4455 ImpE Protein of avirul 93.0 0.94 2E-05 33.6 7.7 63 56-118 7-69 (273)
363 COG3947 Response regulator con 92.9 0.74 1.6E-05 35.7 7.3 59 87-145 282-340 (361)
364 COG2909 MalT ATP-dependent tra 92.9 6.9 0.00015 35.2 16.8 101 49-149 414-528 (894)
365 KOG3807 Predicted membrane pro 92.5 4.5 9.7E-05 32.2 13.4 121 15-137 183-330 (556)
366 TIGR03504 FimV_Cterm FimV C-te 92.5 0.82 1.8E-05 24.4 5.3 25 122-146 3-27 (44)
367 KOG0276 Vesicle coat complex C 92.4 3.8 8.1E-05 35.3 11.3 47 61-112 648-694 (794)
368 COG3947 Response regulator con 92.4 0.87 1.9E-05 35.3 7.1 58 53-110 282-339 (361)
369 PF10255 Paf67: RNA polymerase 92.3 0.38 8.2E-06 39.3 5.5 61 18-78 124-192 (404)
370 KOG0890 Protein kinase of the 92.3 2.9 6.3E-05 41.5 11.7 133 14-148 1668-1834(2382)
371 PF10255 Paf67: RNA polymerase 91.9 1.8 3.9E-05 35.5 8.9 60 53-112 125-192 (404)
372 KOG0890 Protein kinase of the 91.8 15 0.00032 37.1 15.6 101 48-150 1668-1787(2382)
373 TIGR03504 FimV_Cterm FimV C-te 91.7 0.54 1.2E-05 25.1 4.0 25 20-44 3-27 (44)
374 COG4649 Uncharacterized protei 91.4 4 8.7E-05 29.3 12.4 110 17-128 95-210 (221)
375 COG2909 MalT ATP-dependent tra 91.4 11 0.00023 34.1 14.7 119 15-133 414-552 (894)
376 PF12854 PPR_1: PPR repeat 91.2 0.78 1.7E-05 22.8 4.1 27 49-75 6-32 (34)
377 PF12854 PPR_1: PPR repeat 90.8 0.9 2E-05 22.6 4.1 27 83-109 6-32 (34)
378 PF11817 Foie-gras_1: Foie gra 90.6 4.1 8.8E-05 31.1 9.4 61 85-145 179-245 (247)
379 COG1747 Uncharacterized N-term 90.2 11 0.00023 32.1 15.9 144 13-159 63-246 (711)
380 KOG3783 Uncharacterized conser 90.1 11 0.00023 32.1 15.3 67 87-153 452-526 (546)
381 PF13226 DUF4034: Domain of un 89.4 8.7 0.00019 29.9 10.5 113 23-135 7-150 (277)
382 PF13041 PPR_2: PPR repeat fam 89.3 2.3 4.9E-05 23.1 6.2 27 52-78 5-31 (50)
383 PF09797 NatB_MDM20: N-acetylt 89.2 6 0.00013 32.2 9.8 46 30-75 197-242 (365)
384 KOG0686 COP9 signalosome, subu 89.0 5.1 0.00011 32.7 8.8 96 16-111 150-256 (466)
385 KOG0276 Vesicle coat complex C 88.9 6 0.00013 34.1 9.5 31 48-78 664-694 (794)
386 PF14863 Alkyl_sulf_dimr: Alky 88.7 3 6.4E-05 28.8 6.6 49 51-99 71-119 (141)
387 KOG2041 WD40 repeat protein [G 88.7 9.5 0.00021 33.7 10.7 27 16-42 796-822 (1189)
388 PF10579 Rapsyn_N: Rapsyn N-te 88.7 3.9 8.4E-05 25.0 7.6 59 17-75 7-68 (80)
389 KOG0686 COP9 signalosome, subu 88.6 4.5 9.7E-05 33.0 8.3 95 51-145 151-256 (466)
390 PF10345 Cohesin_load: Cohesin 88.4 17 0.00036 32.0 16.5 116 32-148 37-169 (608)
391 PF01535 PPR: PPR repeat; Int 88.3 1 2.3E-05 21.2 3.3 25 53-77 3-27 (31)
392 KOG2422 Uncharacterized conser 87.9 17 0.00036 31.4 14.3 128 29-156 251-421 (665)
393 PF08311 Mad3_BUB1_I: Mad3/BUB 87.2 3.1 6.8E-05 28.1 6.0 44 68-111 81-126 (126)
394 PHA02537 M terminase endonucle 86.5 2.2 4.7E-05 32.1 5.3 94 59-152 92-212 (230)
395 COG5536 BET4 Protein prenyltra 86.4 8.7 0.00019 29.8 8.3 86 5-90 97-190 (328)
396 KOG3616 Selective LIM binding 86.3 7.8 0.00017 34.5 9.0 111 21-141 711-847 (1636)
397 PF14863 Alkyl_sulf_dimr: Alky 86.0 4 8.6E-05 28.2 6.0 52 83-134 69-120 (141)
398 KOG1538 Uncharacterized conser 85.8 5.9 0.00013 34.5 7.9 47 94-143 783-829 (1081)
399 TIGR00756 PPR pentatricopeptid 85.7 2.5 5.4E-05 20.3 3.9 26 53-78 3-28 (35)
400 PF09797 NatB_MDM20: N-acetylt 85.7 3.9 8.4E-05 33.3 6.9 42 1-42 202-243 (365)
401 PF09205 DUF1955: Domain of un 85.6 9.1 0.0002 26.2 7.3 54 60-113 96-149 (161)
402 PF13041 PPR_2: PPR repeat fam 85.6 4.1 8.9E-05 22.0 6.1 44 15-58 2-46 (50)
403 PF11846 DUF3366: Domain of un 85.5 3.8 8.2E-05 29.9 6.2 45 70-115 131-175 (193)
404 KOG1464 COP9 signalosome, subu 85.5 11 0.00024 29.3 8.5 121 29-149 40-222 (440)
405 PF04190 DUF410: Protein of un 85.2 15 0.00034 28.3 11.5 92 16-107 10-113 (260)
406 COG5536 BET4 Protein prenyltra 84.4 17 0.00038 28.2 10.6 133 32-164 90-239 (328)
407 KOG0546 HSP90 co-chaperone CPR 83.9 1.1 2.3E-05 35.7 2.8 79 18-96 277-355 (372)
408 PF11846 DUF3366: Domain of un 83.9 9.2 0.0002 27.9 7.6 50 101-151 128-177 (193)
409 COG1747 Uncharacterized N-term 82.0 32 0.00068 29.5 14.5 136 13-150 96-291 (711)
410 KOG0128 RNA-binding protein SA 81.6 41 0.00088 30.5 12.7 117 30-147 93-219 (881)
411 KOG4014 Uncharacterized conser 81.2 19 0.0004 26.3 11.9 112 13-129 31-155 (248)
412 KOG2114 Vacuolar assembly/sort 80.9 30 0.00064 31.3 10.3 30 16-45 368-397 (933)
413 PF09205 DUF1955: Domain of un 80.9 15 0.00033 25.2 7.4 120 23-147 9-149 (161)
414 KOG1538 Uncharacterized conser 80.4 5 0.00011 34.9 5.6 52 56-110 779-830 (1081)
415 PF02184 HAT: HAT (Half-A-TPR) 80.4 5.4 0.00012 19.6 3.8 26 31-57 2-27 (32)
416 PRK11619 lytic murein transgly 79.6 45 0.00097 29.7 16.0 126 20-146 245-374 (644)
417 PF13812 PPR_3: Pentatricopept 79.4 5.5 0.00012 19.1 4.1 25 53-77 4-28 (34)
418 PRK15490 Vi polysaccharide bio 79.4 29 0.00062 30.2 9.7 80 27-108 19-98 (578)
419 cd02682 MIT_AAA_Arch MIT: doma 79.3 10 0.00023 22.9 5.3 10 63-72 19-28 (75)
420 KOG4279 Serine/threonine prote 79.2 21 0.00046 31.9 8.9 121 29-150 256-398 (1226)
421 cd02680 MIT_calpain7_2 MIT: do 78.8 5.1 0.00011 24.3 3.9 17 62-78 18-34 (75)
422 COG5159 RPN6 26S proteasome re 78.4 31 0.00067 27.2 11.8 49 20-68 7-63 (421)
423 PHA02537 M terminase endonucle 77.9 5.9 0.00013 29.8 4.8 91 27-117 94-211 (230)
424 PF12739 TRAPPC-Trs85: ER-Golg 77.4 41 0.00089 28.0 15.1 94 18-111 210-327 (414)
425 KOG2561 Adaptor protein NUB1, 77.0 30 0.00065 28.8 8.7 96 18-113 165-296 (568)
426 cd02679 MIT_spastin MIT: domai 77.0 6.2 0.00013 24.2 3.9 15 98-112 22-36 (79)
427 KOG0687 26S proteasome regulat 76.3 38 0.00082 27.1 10.4 101 50-150 104-213 (393)
428 KOG2758 Translation initiation 76.1 38 0.00083 27.1 14.3 72 7-78 120-195 (432)
429 TIGR02710 CRISPR-associated pr 75.9 43 0.00093 27.5 12.9 64 12-75 124-196 (380)
430 cd02682 MIT_AAA_Arch MIT: doma 75.8 15 0.00033 22.2 5.6 13 96-108 18-30 (75)
431 cd00280 TRFH Telomeric Repeat 75.7 28 0.00061 25.3 9.2 44 55-99 116-159 (200)
432 PRK15490 Vi polysaccharide bio 74.6 36 0.00078 29.6 9.1 58 15-74 41-98 (578)
433 PF07219 HemY_N: HemY protein 74.5 21 0.00045 23.3 6.8 23 57-79 66-88 (108)
434 COG4941 Predicted RNA polymera 74.2 45 0.00097 26.9 12.7 126 27-153 267-400 (415)
435 KOG4151 Myosin assembly protei 73.1 19 0.00042 32.0 7.2 55 97-151 106-160 (748)
436 smart00299 CLH Clathrin heavy 72.5 27 0.00059 23.7 13.0 106 24-143 15-121 (140)
437 KOG4151 Myosin assembly protei 71.9 20 0.00044 31.9 7.1 102 21-122 58-165 (748)
438 KOG4014 Uncharacterized conser 71.9 36 0.00079 24.9 14.5 89 4-96 50-156 (248)
439 PF07219 HemY_N: HemY protein 71.8 25 0.00054 22.9 6.8 47 87-133 62-108 (108)
440 smart00777 Mad3_BUB1_I Mad3/BU 71.7 22 0.00048 24.0 5.9 57 47-109 66-124 (125)
441 PF04212 MIT: MIT (microtubule 70.5 17 0.00037 21.3 4.7 25 123-147 10-34 (69)
442 KOG0687 26S proteasome regulat 70.3 55 0.0012 26.3 10.5 98 16-113 104-210 (393)
443 PF02064 MAS20: MAS20 protein 70.2 19 0.00041 24.2 5.2 29 122-150 67-95 (121)
444 PF04090 RNA_pol_I_TF: RNA pol 69.3 43 0.00094 24.7 10.3 61 17-77 42-103 (199)
445 PF04212 MIT: MIT (microtubule 68.4 20 0.00042 21.1 4.7 23 21-43 10-32 (69)
446 COG5187 RPN7 26S proteasome re 68.0 59 0.0013 25.7 10.9 120 30-149 89-223 (412)
447 PF02064 MAS20: MAS20 protein 67.7 20 0.00043 24.0 5.0 27 55-81 68-94 (121)
448 PRK11619 lytic murein transgly 67.4 93 0.002 27.8 15.4 121 22-144 318-465 (644)
449 KOG2114 Vacuolar assembly/sort 66.7 56 0.0012 29.7 8.6 55 24-79 342-397 (933)
450 KOG0128 RNA-binding protein SA 66.4 1.1E+02 0.0023 28.1 16.3 108 5-113 102-219 (881)
451 PF10952 DUF2753: Protein of u 66.3 38 0.00082 22.9 6.8 26 119-144 51-76 (140)
452 cd02677 MIT_SNX15 MIT: domain 65.1 12 0.00027 22.6 3.3 14 64-77 20-33 (75)
453 PF12753 Nro1: Nuclear pore co 64.5 19 0.00041 29.5 5.1 12 101-112 379-390 (404)
454 PF04840 Vps16_C: Vps16, C-ter 64.3 73 0.0016 25.5 9.6 100 24-140 185-284 (319)
455 KOG3783 Uncharacterized conser 63.4 98 0.0021 26.7 13.0 91 33-125 250-344 (546)
456 PF10952 DUF2753: Protein of u 63.0 44 0.00096 22.6 6.2 28 19-46 4-31 (140)
457 KOG1497 COP9 signalosome, subu 62.7 79 0.0017 25.4 10.0 93 52-144 105-210 (399)
458 cd02681 MIT_calpain7_1 MIT: do 62.1 28 0.00061 21.1 4.5 23 125-147 13-35 (76)
459 KOG4279 Serine/threonine prote 61.1 40 0.00087 30.4 6.7 114 12-126 274-408 (1226)
460 smart00671 SEL1 Sel1-like repe 60.1 19 0.00041 17.4 3.8 13 31-43 20-32 (36)
461 cd02681 MIT_calpain7_1 MIT: do 60.1 32 0.00069 20.9 4.5 21 23-43 13-33 (76)
462 cd02679 MIT_spastin MIT: domai 59.7 27 0.00058 21.4 4.1 23 125-147 15-37 (79)
463 PF05053 Menin: Menin; InterP 58.4 69 0.0015 27.8 7.5 28 118-145 318-345 (618)
464 PF07163 Pex26: Pex26 protein; 57.9 91 0.002 24.5 12.4 123 19-142 38-182 (309)
465 PF12753 Nro1: Nuclear pore co 57.2 18 0.00039 29.6 3.9 31 101-133 335-365 (404)
466 COG2015 Alkyl sulfatase and re 56.9 84 0.0018 26.8 7.6 51 86-136 454-504 (655)
467 PF09670 Cas_Cas02710: CRISPR- 56.7 1.1E+02 0.0024 25.2 15.1 45 2-46 151-199 (379)
468 PF04190 DUF410: Protein of un 56.4 92 0.002 24.1 15.6 113 15-147 48-170 (260)
469 PF08238 Sel1: Sel1 repeat; I 56.4 24 0.00052 17.4 4.2 12 32-43 24-35 (39)
470 cd00280 TRFH Telomeric Repeat 56.3 76 0.0016 23.2 6.4 44 91-135 118-161 (200)
471 KOG2561 Adaptor protein NUB1, 54.1 1.3E+02 0.0029 25.3 8.5 95 53-147 166-296 (568)
472 PF00244 14-3-3: 14-3-3 protei 54.1 96 0.0021 23.6 11.5 32 18-49 3-34 (236)
473 PF14689 SPOB_a: Sensor_kinase 53.4 39 0.00084 19.5 4.0 20 57-76 30-49 (62)
474 PF12921 ATP13: Mitochondrial 53.2 68 0.0015 21.6 8.7 64 52-115 4-83 (126)
475 COG4941 Predicted RNA polymera 53.0 1.2E+02 0.0027 24.6 15.8 121 4-125 278-406 (415)
476 KOG1524 WD40 repeat-containing 52.9 1.5E+02 0.0033 25.6 10.9 88 17-109 574-669 (737)
477 PF12583 TPPII_N: Tripeptidyl 51.0 76 0.0017 21.7 5.4 28 65-92 91-118 (139)
478 smart00745 MIT Microtubule Int 50.3 54 0.0012 19.6 4.6 21 126-146 16-36 (77)
479 smart00299 CLH Clathrin heavy 48.6 82 0.0018 21.2 12.6 35 62-96 19-53 (140)
480 KOG4563 Cell cycle-regulated h 48.6 48 0.001 27.0 4.9 58 16-73 41-106 (400)
481 COG4259 Uncharacterized protei 48.3 74 0.0016 20.6 6.1 38 118-155 72-109 (121)
482 PF05053 Menin: Menin; InterP 48.1 39 0.00085 29.2 4.6 43 2-44 299-346 (618)
483 KOG4056 Translocase of outer m 47.5 86 0.0019 21.6 5.3 41 122-165 85-125 (143)
484 TIGR00985 3a0801s04tom mitocho 46.7 68 0.0015 22.4 4.9 29 122-150 94-123 (148)
485 PF03745 DUF309: Domain of unk 46.3 58 0.0013 18.8 7.1 23 57-79 6-28 (62)
486 TIGR00985 3a0801s04tom mitocho 46.1 65 0.0014 22.5 4.7 30 55-84 95-125 (148)
487 PF08311 Mad3_BUB1_I: Mad3/BUB 45.6 92 0.002 21.0 12.9 44 102-145 81-126 (126)
488 COG5187 RPN7 26S proteasome re 45.5 1.5E+02 0.0033 23.5 10.6 99 16-114 115-222 (412)
489 cd02683 MIT_1 MIT: domain cont 45.1 70 0.0015 19.4 6.2 14 62-75 18-31 (77)
490 TIGR03362 VI_chp_7 type VI sec 45.1 1.6E+02 0.0034 23.5 16.3 120 28-148 111-280 (301)
491 COG5600 Transcription-associat 44.8 1.1E+02 0.0024 25.2 6.3 62 55-116 182-252 (413)
492 PF13226 DUF4034: Domain of un 44.6 1.5E+02 0.0033 23.2 9.8 109 58-167 8-148 (277)
493 PF11349 DUF3151: Protein of u 44.4 97 0.0021 20.9 6.7 28 11-38 31-58 (129)
494 PF14929 TAF1_subA: TAF RNA Po 43.9 2.2E+02 0.0048 24.9 11.0 111 30-145 323-439 (547)
495 cd02678 MIT_VPS4 MIT: domain c 43.5 72 0.0016 19.1 4.5 15 28-42 18-32 (75)
496 KOG1920 IkappaB kinase complex 43.4 2.6E+02 0.0056 27.0 9.1 134 2-146 893-1027(1265)
497 PF01239 PPTA: Protein prenylt 43.0 39 0.00085 16.0 4.2 9 78-86 11-19 (31)
498 PF14852 Fis1_TPR_N: Fis1 N-te 43.0 46 0.00099 16.7 2.8 26 120-145 3-31 (35)
499 PF13934 ELYS: Nuclear pore co 42.9 1.5E+02 0.0031 22.4 11.7 130 5-143 29-165 (226)
500 PF06957 COPI_C: Coatomer (COP 41.9 1.8E+02 0.0038 24.5 7.4 111 54-164 208-346 (422)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=3e-23 Score=166.56 Aligned_cols=159 Identities=18% Similarity=0.215 Sum_probs=116.4
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
||..|++++++.|+.+.++.++|+.+-..|+..+|..+|.+++.+.|+++.+..+||.++...|.+++|...|.+++...
T Consensus 305 AI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~ 384 (966)
T KOG4626|consen 305 AIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF 384 (966)
T ss_pred HHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC
Confidence 56677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHH
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLE 159 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 159 (244)
|....++.++|.++..+|++++|+.+|++++++.|....++.++|..|..+|+...|+++|.+++.++|....+...+.
T Consensus 385 p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLa 463 (966)
T KOG4626|consen 385 PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLA 463 (966)
T ss_pred hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHH
Confidence 7777777777777777777777777777777777777777777777777777777777777777777776444443333
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1e-23 Score=169.24 Aligned_cols=150 Identities=17% Similarity=0.138 Sum_probs=77.8
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
||..|++|++++|+...+|++||.+|...+.++.|+.+|.+++...|+++.++.++|.+|..+|..+-|+.+|++++...
T Consensus 237 aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~ 316 (966)
T KOG4626|consen 237 AIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ 316 (966)
T ss_pred HHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC
Confidence 45666777777777777777777766666666555555555555555544444444444444444444444444444444
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
|+.++++.++|.++...|+..+|+.+|.+++.+.|+.+.+..++|.++..+|.+++|...|.++++..|.
T Consensus 317 P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~ 386 (966)
T KOG4626|consen 317 PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE 386 (966)
T ss_pred CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh
Confidence 4444444444444444444444444444444444444444444444444444444444444444444443
No 3
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=6.4e-22 Score=159.86 Aligned_cols=167 Identities=16% Similarity=0.235 Sum_probs=110.7
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
||++|++|+++||+.+.+|..+|..+....++|+|..+|+.++..+|.+-.+|+.+|.+|.+.++++.|.-.|++|+.++
T Consensus 440 Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN 519 (638)
T KOG1126|consen 440 AIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN 519 (638)
T ss_pred HHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC
Confidence 45666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLER 160 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 160 (244)
|.+......+|.++.+.|+.++|+..+++|+.++|.++...+..|.++...+++++|+..+++.-++.|+.......+++
T Consensus 520 P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgk 599 (638)
T KOG1126|consen 520 PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGK 599 (638)
T ss_pred ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhcc
Q 039523 161 IVLNLEG 167 (244)
Q Consensus 161 ~~~~~~~ 167 (244)
....+..
T Consensus 600 i~k~~~~ 606 (638)
T KOG1126|consen 600 IYKRLGN 606 (638)
T ss_pred HHHHHcc
Confidence 5555553
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=1.6e-20 Score=160.35 Aligned_cols=150 Identities=13% Similarity=0.187 Sum_probs=106.1
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+..|+++++.+|+...++..+|.++...|++++|+..+++++..+|+++.+++.+|.++...|++++|+.+|++++.++
T Consensus 350 A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 350 ALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429 (615)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 45566666766777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
|++..++..+|.++..+|++++|+..|++++...|+++.++..+|.++...|++++|+..|++++.+.|+
T Consensus 430 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 430 PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 7777777777777777777777777777777777777777777777777777777777777777776665
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=4.5e-20 Score=157.61 Aligned_cols=164 Identities=14% Similarity=0.144 Sum_probs=151.7
Q ss_pred CchHHHHHHhh---ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039523 1 MMPAMKKLWKF---QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAV 77 (244)
Q Consensus 1 Ai~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 77 (244)
|++.|+++++. +|....++..+|.++..+|++++|+..+++++..+|.+...+..+|.++...|++++|+..+++++
T Consensus 313 A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al 392 (615)
T TIGR00990 313 AARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKAL 392 (615)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45678888875 478889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHH
Q 039523 78 QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTEL 157 (244)
Q Consensus 78 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 157 (244)
..+|+++.+++.+|.++...|++++|+..|++++.++|++...+.++|.++..+|++++|+..++++++..|+.+.....
T Consensus 393 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~ 472 (615)
T TIGR00990 393 KLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNY 472 (615)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997765555
Q ss_pred HHHHHHH
Q 039523 158 LERIVLN 164 (244)
Q Consensus 158 l~~~~~~ 164 (244)
+..+...
T Consensus 473 lg~~~~~ 479 (615)
T TIGR00990 473 YGELLLD 479 (615)
T ss_pred HHHHHHH
Confidence 5544443
No 6
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=5.7e-21 Score=154.42 Aligned_cols=150 Identities=15% Similarity=0.227 Sum_probs=144.2
Q ss_pred HHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHH
Q 039523 6 KKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGE 85 (244)
Q Consensus 6 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 85 (244)
+..+..+|+.|+.|..+|++|..+++++.|+++|+++++++|....++..+|.=+....++|+|..+|++++..+|.+..
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn 490 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN 490 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH
Confidence 45667799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhH
Q 039523 86 AWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDT 155 (244)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 155 (244)
+|+.+|.+|.++++++.|.-+|++|+.++|.+......+|.++...|+.++|+..+++|+.++|.++...
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999966443
No 7
>PRK12370 invasion protein regulator; Provisional
Probab=99.86 E-value=9e-20 Score=153.47 Aligned_cols=162 Identities=14% Similarity=0.041 Sum_probs=143.5
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNR---------GEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALD 71 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 71 (244)
|+.+|+++++.+|+++.++..+|.++... +++++|+..++++++.+|+++.++..+|.++...|++++|+.
T Consensus 280 A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~ 359 (553)
T PRK12370 280 ALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSL 359 (553)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH
Confidence 57889999999999999999999887643 448999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-CC
Q 039523 72 VFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNIT-NN 150 (244)
Q Consensus 72 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~ 150 (244)
.|+++++.+|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.++...|++++|+..++++++.. |+
T Consensus 360 ~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~ 439 (553)
T PRK12370 360 LFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQD 439 (553)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999988777777777888999999999999999875 66
Q ss_pred chhhHHHHHHHH
Q 039523 151 KRIDTELLERIV 162 (244)
Q Consensus 151 ~~~~~~~l~~~~ 162 (244)
.+.....+....
T Consensus 440 ~~~~~~~la~~l 451 (553)
T PRK12370 440 NPILLSMQVMFL 451 (553)
T ss_pred CHHHHHHHHHHH
Confidence 554444444443
No 8
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.86 E-value=1.1e-19 Score=129.91 Aligned_cols=144 Identities=22% Similarity=0.210 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM 95 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 95 (244)
..+...||..|+..|++..|...++++++.+|++..+|..+|.+|...|+.+.|.+.|+++++++|++.+++++.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHH
Q 039523 96 IKNKSKEAFIAFKEALKL--KRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLE 159 (244)
Q Consensus 96 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 159 (244)
.+|++++|...|++++.. .|..+..+.++|.|..+.|+++.|..+|+++++++|+.+.....+.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a 180 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELA 180 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHH
Confidence 999999999999999985 3456789999999999999999999999999999999665444333
No 9
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=5.9e-20 Score=143.10 Aligned_cols=147 Identities=15% Similarity=0.163 Sum_probs=130.6
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+.+|++|++++|....+|..+|..|..+++-..|+..|++|++++|.+-.+|+.+|..|.-++-..=|+-+|++++...
T Consensus 349 Av~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k 428 (559)
T KOG1155|consen 349 AVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK 428 (559)
T ss_pred HHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC
Confidence 56788899999999999999999999999999999999999999999888999999999988888888899999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
|+++..|..+|.||.+.++.++|+++|.+++.....+..++..+|.+|.+.++.++|..+|++.++.
T Consensus 429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888888888888999999999999999988888874
No 10
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.85 E-value=6e-20 Score=127.63 Aligned_cols=125 Identities=14% Similarity=0.132 Sum_probs=99.2
Q ss_pred hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 039523 3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPE 82 (244)
Q Consensus 3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 82 (244)
.+|+++++++|++ +..+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4677788877764 5567888888888888888888888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 039523 83 NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD 130 (244)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 130 (244)
++.+++++|.++...|++++|+..|++++...|+++..+.+.+.+...
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888777777766544
No 11
>PRK12370 invasion protein regulator; Provisional
Probab=99.85 E-value=1.8e-19 Score=151.61 Aligned_cols=159 Identities=16% Similarity=0.063 Sum_probs=145.9
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+..++++++++|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++++
T Consensus 323 A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~ 402 (553)
T PRK12370 323 AKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD 402 (553)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHH
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK-RNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLE 159 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 159 (244)
|.++..+..++.++...|++++|+..+++++... |+++..+..+|.++...|++++|...+.+.....|........+.
T Consensus 403 P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~ 482 (553)
T PRK12370 403 PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLY 482 (553)
T ss_pred CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 9998887777778888999999999999999875 788999999999999999999999999998888777554444443
No 12
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.85 E-value=2.7e-19 Score=128.00 Aligned_cols=167 Identities=16% Similarity=0.042 Sum_probs=150.0
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc-
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL- 79 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~- 79 (244)
|...+++||+.+|++..+|..+|..|...|+.+.|.+.|+++++++|++..++.+.|..+...|++++|...|++++..
T Consensus 54 A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P 133 (250)
T COG3063 54 AKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADP 133 (250)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCC
Confidence 3467899999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred -CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHH
Q 039523 80 -DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELL 158 (244)
Q Consensus 80 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 158 (244)
.|..+..+-++|.|..+.|+.+.|..+|+++++.+|+.+.....++..+...|++-.|..++++.....+-....+-..
T Consensus 134 ~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~ 213 (250)
T COG3063 134 AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLG 213 (250)
T ss_pred CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHH
Confidence 4567789999999999999999999999999999999999999999999999999999999999887766544444444
Q ss_pred HHHHHHhcc
Q 039523 159 ERIVLNLEG 167 (244)
Q Consensus 159 ~~~~~~~~~ 167 (244)
-++...+.+
T Consensus 214 iriak~~gd 222 (250)
T COG3063 214 IRIAKRLGD 222 (250)
T ss_pred HHHHHHhcc
Confidence 445444443
No 13
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.84 E-value=1.9e-18 Score=129.85 Aligned_cols=155 Identities=15% Similarity=0.068 Sum_probs=132.3
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+..++++++.+|++..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|.+.+.+++...
T Consensus 50 A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 129 (234)
T TIGR02521 50 AKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP 129 (234)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 45678888888888888888999999999999999999999999888888888889999999999999999999888753
Q ss_pred --CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhH
Q 039523 81 --PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDT 155 (244)
Q Consensus 81 --p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 155 (244)
+.....+..+|.++...|++++|...+.+++..+|++...+..+|.++...|++++|..++++++...|......
T Consensus 130 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 206 (234)
T TIGR02521 130 LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESL 206 (234)
T ss_pred ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 455677888899999999999999999999998888888888899999999999999999998888866644333
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=9.4e-19 Score=153.68 Aligned_cols=151 Identities=11% Similarity=0.066 Sum_probs=144.1
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+.+|+++++.+|++...+..++......|++++|+..++++++.+|+ +.++..+|.++.+.|++++|+..+++++..+
T Consensus 561 A~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~ 639 (987)
T PRK09782 561 RDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELE 639 (987)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 467889999999999888888888888889999999999999999996 8999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR 152 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 152 (244)
|+++.++.++|.++...|++++|+..++++++.+|+++.++.++|.++...|++++|+.+++++++++|+..
T Consensus 640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA 711 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999854
No 15
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=8.4e-19 Score=136.74 Aligned_cols=160 Identities=19% Similarity=0.284 Sum_probs=143.1
Q ss_pred HHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHH
Q 039523 7 KLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEA 86 (244)
Q Consensus 7 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 86 (244)
.+..+|...++....+|+-|...++.++|+.+|+++++++|....+|..+|.-|+.+++...|++.|++|+.++|.+..+
T Consensus 321 ~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA 400 (559)
T KOG1155|consen 321 NVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA 400 (559)
T ss_pred HHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH
Confidence 34444555566666778888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523 87 WNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE 166 (244)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 166 (244)
|+.+|++|..++-..=|+-+|++|+.+.|+++..|..+|.||.++++.++|+.+|++++..........-.++++.+.+.
T Consensus 401 WYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 401 WYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELK 480 (559)
T ss_pred HhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987665555555666555554
No 16
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.82 E-value=4.8e-18 Score=132.31 Aligned_cols=149 Identities=14% Similarity=0.085 Sum_probs=113.6
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|++..++.++|.++...|++++|++.++++++.+
T Consensus 83 A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~ 162 (296)
T PRK11189 83 ARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD 162 (296)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 45678888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------------------------------------CCCCHHHHHH
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKL-------------------------------------KRNGWQLWEN 123 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------------------------------------~p~~~~~~~~ 123 (244)
|+++.... ...+....+++++|+..+.+++.. .|+...+|++
T Consensus 163 P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~ 241 (296)
T PRK11189 163 PNDPYRAL-WLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFY 241 (296)
T ss_pred CCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 87763211 112233445566666666443322 2223457888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 124 YSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 124 la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
+|.++...|++++|+.+|+++++.+|.
T Consensus 242 Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 242 LAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 999999999999999999999999975
No 17
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.82 E-value=1.6e-18 Score=120.55 Aligned_cols=127 Identities=17% Similarity=0.123 Sum_probs=117.1
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 039523 36 KILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR 115 (244)
Q Consensus 36 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 115 (244)
...++++++.+|++ +..+|.++...|++++|...|.+++..+|.++.+|..+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46889999999975 567899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHh
Q 039523 116 NGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNL 165 (244)
Q Consensus 116 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 165 (244)
+++.+++++|.++...|++++|+..|.+++++.|+++..+.........+
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877766665555443
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=2.8e-18 Score=146.84 Aligned_cols=151 Identities=13% Similarity=0.051 Sum_probs=136.0
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYET----SKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRA 76 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 76 (244)
|+..|+++++.+|+++.++..+|.++...|++++ |+..|++++..+|+++.++..+|.++...|++++|+..++++
T Consensus 231 A~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~a 310 (656)
T PRK15174 231 AIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQS 310 (656)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4677888888899999999999999999999885 789999999999999999999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523 77 VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK 151 (244)
Q Consensus 77 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 151 (244)
+..+|+++.++..+|.++...|++++|+..|++++..+|++...+..+|.++...|++++|+..|+++++..|+.
T Consensus 311 l~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 311 LATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 999999999999999999999999999999999999999888777778888999999999999999999998884
No 19
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.80 E-value=1.3e-17 Score=129.93 Aligned_cols=148 Identities=14% Similarity=-0.014 Sum_probs=129.2
Q ss_pred chHHHHHHhh---cc-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039523 2 MPAMKKLWKF---QM-ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAV 77 (244)
Q Consensus 2 i~~~~~al~~---~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 77 (244)
|..+.+++.. +| ..+..|+.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++
T Consensus 46 i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al 125 (296)
T PRK11189 46 LARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVL 125 (296)
T ss_pred HHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5667788864 33 3478899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 78 QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 78 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
+++|++..++.++|.++...|++++|+..++++++.+|+++..... ..+....+++++|+..+.+++...+.
T Consensus 126 ~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~ 197 (296)
T PRK11189 126 ELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDK 197 (296)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCc
Confidence 9999999999999999999999999999999999999998742222 23345678999999999887765433
No 20
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.80 E-value=1.3e-17 Score=121.81 Aligned_cols=130 Identities=22% Similarity=0.236 Sum_probs=120.3
Q ss_pred cCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHcCC--hHHHHH
Q 039523 29 RGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLH-MIKNK--SKEAFI 105 (244)
Q Consensus 29 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~-~~~~~--~~~A~~ 105 (244)
.++.++++..++++++.+|++...|..+|.++...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 566788999999999999999999999999999999999999999999999999999999999975 67787 599999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHH
Q 039523 106 AFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELL 158 (244)
Q Consensus 106 ~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 158 (244)
.++++++.+|+++.++..+|..+...|++++|+.+|+++++..|........+
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 99999999999999999999999999999999999999999998855444444
No 21
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=6.1e-18 Score=132.81 Aligned_cols=150 Identities=19% Similarity=0.220 Sum_probs=146.6
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|.+.|++++.++|.....|..+|.+|.+..+.++-...|.++..++|+++.+++..|.+++-++++++|+..|++++.++
T Consensus 345 a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~ 424 (606)
T KOG0547|consen 345 AQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD 424 (606)
T ss_pred hhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
|.+.-.+..++.+.+++++++++...|+.+.+..|+.++++...|.++..+++|+.|.+.|.+++++.|.
T Consensus 425 pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 425 PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998
No 22
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.78 E-value=4.9e-17 Score=147.55 Aligned_cols=161 Identities=19% Similarity=0.177 Sum_probs=136.1
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh--------------HHHHHHHHHHHccCH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPD--------------GWFALGAAALKARDV 66 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~la~~~~~~g~~ 66 (244)
|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++.+|++.. ....+|.++...|++
T Consensus 288 A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~ 367 (1157)
T PRK11447 288 AIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNL 367 (1157)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCH
Confidence 578899999999999999999999999999999999999999999987653 123457788899999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH-------------------
Q 039523 67 EKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV------------------- 127 (244)
Q Consensus 67 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~------------------- 127 (244)
++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..++.+
T Consensus 368 ~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~ 447 (1157)
T PRK11447 368 AQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSAS 447 (1157)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHH
Confidence 9999999999999999999999999999999999999999999999999887766555443
Q ss_pred -----------------------HHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHH
Q 039523 128 -----------------------ALDVGNIGQALEAVQMVLNITNNKRIDTELLERI 161 (244)
Q Consensus 128 -----------------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 161 (244)
+...|++++|+..|+++++.+|+++...-.+..+
T Consensus 448 ~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~ 504 (1157)
T PRK11447 448 QRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQD 504 (1157)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4457899999999999999999876544444433
No 23
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=5.1e-18 Score=135.63 Aligned_cols=167 Identities=13% Similarity=0.130 Sum_probs=134.7
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC-
Q 039523 2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD- 80 (244)
Q Consensus 2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~- 80 (244)
+=+|+.|++.+|.+.++|..||.+....++-..|+..++++++++|++..++..||.+|...|.-.+|.+++.+.+...
T Consensus 305 ~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p 384 (579)
T KOG1125|consen 305 ALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKP 384 (579)
T ss_pred HHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc
Confidence 3468889999999999999999999999999999999999999999999999999988888888888888888775543
Q ss_pred ----------------------------------------C--CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH
Q 039523 81 ----------------------------------------P--ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGW 118 (244)
Q Consensus 81 ----------------------------------------p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 118 (244)
| .++++...||.+|...|+|+.|+.+|+.|+...|++.
T Consensus 385 ~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~ 464 (579)
T KOG1125|consen 385 KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDY 464 (579)
T ss_pred cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchH
Confidence 2 3457788888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc---hhhHHHHHHHHHHhccc
Q 039523 119 QLWENYSHVALDVGNIGQALEAVQMVLNITNNK---RIDTELLERIVLNLEGR 168 (244)
Q Consensus 119 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~ 168 (244)
..|..||-.+..-.+.++|+..|.+|+++.|+. ..++..-..-++.++++
T Consensus 465 ~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 465 LLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred HHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHH
Confidence 888888888888888888888888888888882 23333333444444443
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.77 E-value=2e-17 Score=145.42 Aligned_cols=151 Identities=12% Similarity=0.001 Sum_probs=146.3
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+..|+++++.+|+ +.++..+|.++.+.|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+
T Consensus 595 Al~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 595 ALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 56789999999996 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR 152 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 152 (244)
|+++.+++++|.++...|++++|+..+++++...|++..+....|.+.....+++.+.+.+.+...++|+..
T Consensus 674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 674 PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 999999999999999999999999999999999999999999999999999999999999999999988843
No 25
>PLN02789 farnesyltranstransferase
Probab=99.77 E-value=8.2e-17 Score=125.49 Aligned_cols=164 Identities=12% Similarity=0.048 Sum_probs=150.5
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCH--HHHHHHHHHHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRG-EYETSKILREAAMALNSLYPDGWFALGAAALKARDV--EKALDVFTRAV 77 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--~~A~~~~~~a~ 77 (244)
|+..+.++++++|++..+|...+.++...| ++++++.++.+++..+|++..+|...+.++...|+. ++++.++++++
T Consensus 56 AL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal 135 (320)
T PLN02789 56 ALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKIL 135 (320)
T ss_pred HHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHH
Confidence 577899999999999999999999999998 689999999999999999999999999999999874 78899999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHhhcCC
Q 039523 78 QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV---GNI----GQALEAVQMVLNITNN 150 (244)
Q Consensus 78 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~---~~~----~~A~~~~~~al~~~p~ 150 (244)
+.+|.+..+|...+.++...|+++++++++.++++.+|.+..+|...+.+.... |.+ ++++.+..+++..+|+
T Consensus 136 ~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~ 215 (320)
T PLN02789 136 SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR 215 (320)
T ss_pred HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999998776 333 4788889999999999
Q ss_pred chhhHHHHHHHHHH
Q 039523 151 KRIDTELLERIVLN 164 (244)
Q Consensus 151 ~~~~~~~l~~~~~~ 164 (244)
+...+..+..+...
T Consensus 216 N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 216 NESPWRYLRGLFKD 229 (320)
T ss_pred CcCHHHHHHHHHhc
Confidence 88888877777765
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.77 E-value=9.2e-17 Score=137.59 Aligned_cols=151 Identities=15% Similarity=0.093 Sum_probs=128.6
Q ss_pred chHHHHHHhhcc-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHH----HHHHHHHH
Q 039523 2 MPAMKKLWKFQM-ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEK----ALDVFTRA 76 (244)
Q Consensus 2 i~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~a 76 (244)
+..+++++..+| ........++..+...|++++|+..+++++..+|+++.++..+|.++...|++++ |+..|+++
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 455666666654 3334445567788888999999999999999999999999999999999999885 78999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523 77 VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR 152 (244)
Q Consensus 77 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 152 (244)
++.+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++..|+..
T Consensus 277 l~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~ 352 (656)
T PRK15174 277 LQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS 352 (656)
T ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998888854
No 27
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=2.2e-17 Score=131.98 Aligned_cols=150 Identities=21% Similarity=0.281 Sum_probs=141.3
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---------------------------------
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNS--------------------------------- 47 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------------------------------- 47 (244)
||..++++++++|++..++..||..|...|.-..|..++.+.+...|
T Consensus 338 ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~f 417 (579)
T KOG1125|consen 338 AISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELF 417 (579)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999976432
Q ss_pred ----------CChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523 48 ----------LYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG 117 (244)
Q Consensus 48 ----------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 117 (244)
.++.+...||.+|...|+|++|+.+|+.++...|++...|..+|..+....+.++|+..|.+|+++.|+.
T Consensus 418 Leaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y 497 (579)
T KOG1125|consen 418 LEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY 497 (579)
T ss_pred HHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence 2456788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 118 WQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 118 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
+.+++++|.+|..+|.|++|..+|-.||.+.+.
T Consensus 498 VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 498 VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999998876
No 28
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.77 E-value=1.5e-16 Score=135.21 Aligned_cols=142 Identities=8% Similarity=-0.029 Sum_probs=137.7
Q ss_pred HhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHH
Q 039523 9 WKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWN 88 (244)
Q Consensus 9 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 88 (244)
....|+++.+++.||.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++..+|+++..++
T Consensus 79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 34478899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 89 IIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
.+|.++...|++++|+.+|++++..+|++..++..+|.++...|+.++|...|+++++...+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999999999999999999999999999999998765
No 29
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.77 E-value=4.5e-17 Score=119.06 Aligned_cols=118 Identities=14% Similarity=0.195 Sum_probs=111.6
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHH-HHccC--HHHHHHHHHHHHh
Q 039523 2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAA-LKARD--VEKALDVFTRAVQ 78 (244)
Q Consensus 2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~~~~~a~~ 78 (244)
+..++++++.+|+++..|..+|.++...|++++|+..|+++++.+|+++.++..+|.++ ...|+ +++|.+.++++++
T Consensus 59 i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~ 138 (198)
T PRK10370 59 LQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALA 138 (198)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999975 77787 5999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH
Q 039523 79 LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQ 119 (244)
Q Consensus 79 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 119 (244)
.+|+++.+++.+|.++...|++++|+.+++++++..|.+..
T Consensus 139 ~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 139 LDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 99999999999999999999999999999999999887643
No 30
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.76 E-value=6e-17 Score=111.91 Aligned_cols=116 Identities=20% Similarity=0.306 Sum_probs=73.9
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc
Q 039523 4 AMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN 83 (244)
Q Consensus 4 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 83 (244)
.|++++..+|++......+|..+...|++++|...+++++..+|.++.++..+|.++...|++++|...+++++..+|++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH
Q 039523 84 GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQ 119 (244)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 119 (244)
+..++.+|.++...|++++|+..++++++.+|++..
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 666666666666666666666666666666665544
No 31
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.76 E-value=8.4e-17 Score=111.17 Aligned_cols=129 Identities=22% Similarity=0.248 Sum_probs=119.5
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 039523 37 ILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN 116 (244)
Q Consensus 37 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 116 (244)
..+++++..+|++..+...+|..+...|++++|...+++++..+|.++.++..+|.++...|++++|...+++++..+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHh
Q 039523 117 GWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNL 165 (244)
Q Consensus 117 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 165 (244)
++..++.+|.++...|++++|+..++++++.+|+..............+
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999776555555554433
No 32
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.76 E-value=3.5e-16 Score=117.49 Aligned_cols=148 Identities=22% Similarity=0.232 Sum_probs=135.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 039523 15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLH 94 (244)
Q Consensus 15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 94 (244)
.+..+..+|..+...|++++|+..+++++..+|++..++..+|.++...|++++|.+.++++++..|.++.++..+|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 039523 95 MIKNKSKEAFIAFKEALKLK--RNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIV 162 (244)
Q Consensus 95 ~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 162 (244)
...|++++|...+++++... +.....+..+|.++...|++++|...+.++++..|+.......+..+.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 179 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELY 179 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence 99999999999999999864 456778999999999999999999999999999998655444444443
No 33
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=4e-17 Score=128.28 Aligned_cols=158 Identities=14% Similarity=0.136 Sum_probs=142.3
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523 2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81 (244)
Q Consensus 2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 81 (244)
...|.+|..++|.++.+|+..|++.+-.++++.|+.-|+++++++|++...+..++.+.++.++++++...|+.+++..|
T Consensus 380 ~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP 459 (606)
T KOG0547|consen 380 WKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP 459 (606)
T ss_pred HHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhcCCchhh
Q 039523 82 ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN------GWQLWENYSHVAL-DVGNIGQALEAVQMVLNITNNKRID 154 (244)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~ 154 (244)
+.+.++...|.++..++++++|++.|.+++.+.|. ++..+...|.+.. -.+++..|+..++++++++|....+
T Consensus 460 ~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A 539 (606)
T KOG0547|consen 460 NCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQA 539 (606)
T ss_pred CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHH
Confidence 99999999999999999999999999999999998 5555555555433 3489999999999999999995544
Q ss_pred HHHHH
Q 039523 155 TELLE 159 (244)
Q Consensus 155 ~~~l~ 159 (244)
...+.
T Consensus 540 ~~tla 544 (606)
T KOG0547|consen 540 YETLA 544 (606)
T ss_pred HHHHH
Confidence 44433
No 34
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.75 E-value=1.9e-16 Score=119.77 Aligned_cols=142 Identities=20% Similarity=0.219 Sum_probs=120.0
Q ss_pred hccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHH--
Q 039523 11 FQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYP---DGWFALGAAALKARDVEKALDVFTRAVQLDPENGE-- 85 (244)
Q Consensus 11 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~-- 85 (244)
.++..+..++.+|..++..|++++|+..+++++..+|+++ .+++.+|.++...|++++|+..++++++.+|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4566788899999999999999999999999999988775 57788999999999999999999999999887765
Q ss_pred -HHHHHHHHHHHc--------CChHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHH
Q 039523 86 -AWNIIACLHMIK--------NKSKEAFIAFKEALKLKRNGWQLW-----------------ENYSHVALDVGNIGQALE 139 (244)
Q Consensus 86 -~~~~l~~~~~~~--------~~~~~A~~~~~~a~~~~p~~~~~~-----------------~~la~~~~~~~~~~~A~~ 139 (244)
+++.+|.++... |++++|+..+++++..+|++...+ ..+|.++...|++.+|+.
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 688888888876 788899999999999998875432 356888899999999999
Q ss_pred HHHHHHhhcCCch
Q 039523 140 AVQMVLNITNNKR 152 (244)
Q Consensus 140 ~~~~al~~~p~~~ 152 (244)
.++++++..|+.+
T Consensus 188 ~~~~al~~~p~~~ 200 (235)
T TIGR03302 188 RFETVVENYPDTP 200 (235)
T ss_pred HHHHHHHHCCCCc
Confidence 9999999888754
No 35
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.9e-16 Score=126.44 Aligned_cols=144 Identities=19% Similarity=0.201 Sum_probs=105.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC----Cc---HHHHHHHHHHHH
Q 039523 23 ARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP----EN---GEAWNIIACLHM 95 (244)
Q Consensus 23 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p----~~---~~~~~~l~~~~~ 95 (244)
|..|.+++++..|..+|.+++.+.|.++-+...+|.+.+..+.|.+|..+|++++..-+ .. ...+.++|.++.
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 33333333333344444444444555555555555555555555555555555552211 11 234789999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523 96 IKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE 166 (244)
Q Consensus 96 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 166 (244)
+++.+++|+.++++++.+.|.++.++..+|.+|..+|+++.|+++|.+++-+.|++......|...++..+
T Consensus 467 kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~~~ 537 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIEDSE 537 (611)
T ss_pred HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999888888888877744
No 36
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.74 E-value=7e-16 Score=125.23 Aligned_cols=153 Identities=15% Similarity=0.104 Sum_probs=116.8
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----hhHHHHHHHHHHHccCHHHHHHHHHHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLY----PDGWFALGAAALKARDVEKALDVFTRA 76 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a 76 (244)
|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|...|.++
T Consensus 54 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~ 133 (389)
T PRK11788 54 AIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQL 133 (389)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5678888888888888888888888888888888888888887753322 245777888888888888888888888
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523 77 VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGW-----QLWENYSHVALDVGNIGQALEAVQMVLNITNNK 151 (244)
Q Consensus 77 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 151 (244)
++.+|.+..++..++.++...|++++|+..++++++..|.+. ..+..+|.++...|++++|+.+++++++..|+.
T Consensus 134 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 213 (389)
T PRK11788 134 VDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC 213 (389)
T ss_pred HcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC
Confidence 888777777777777777777777777777777777666542 245566777777777777777777777777664
Q ss_pred hh
Q 039523 152 RI 153 (244)
Q Consensus 152 ~~ 153 (244)
..
T Consensus 214 ~~ 215 (389)
T PRK11788 214 VR 215 (389)
T ss_pred HH
Confidence 43
No 37
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.74 E-value=3.6e-16 Score=141.98 Aligned_cols=156 Identities=12% Similarity=0.060 Sum_probs=125.3
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHH----
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRA---- 76 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a---- 76 (244)
|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++...|+++..++.++..+...|++++|+..++++
T Consensus 480 A~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~ 559 (1157)
T PRK11447 480 AAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQ 559 (1157)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchh
Confidence 5788999999999999999999999999999999999999999999998887777776666666666666655432
Q ss_pred ------------------------------------HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH
Q 039523 77 ------------------------------------VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQL 120 (244)
Q Consensus 77 ------------------------------------~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 120 (244)
++..|.++..+..+|.++...|++++|+..|+++++.+|+++.+
T Consensus 560 ~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a 639 (1157)
T PRK11447 560 WNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADA 639 (1157)
T ss_pred cChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 22356777777788888888888888888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHH
Q 039523 121 WENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTE 156 (244)
Q Consensus 121 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 156 (244)
+..++.++...|++++|+..+++++...|++.....
T Consensus 640 ~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~ 675 (1157)
T PRK11447 640 RLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQR 675 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHH
Confidence 888888888888888888888888777776544333
No 38
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.74 E-value=6.1e-16 Score=137.37 Aligned_cols=155 Identities=17% Similarity=0.205 Sum_probs=98.8
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523 2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81 (244)
Q Consensus 2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 81 (244)
+.+|+++++.+|++..++..+|.++...|++++|+..+++++..+|.+..++..++.++...|++++|...+.+++..+|
T Consensus 485 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 564 (899)
T TIGR02917 485 REAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP 564 (899)
T ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHH
Q 039523 82 ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTE 156 (244)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 156 (244)
.+...+..++.++...|++++|+..+++++...|.++..|..+|.++...|++++|+.+|+++++..|+++....
T Consensus 565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 639 (899)
T TIGR02917 565 QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALL 639 (899)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 666666666666666666666666666666666666666666666666666666666666666666665444333
No 39
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.74 E-value=7.1e-16 Score=125.18 Aligned_cols=133 Identities=18% Similarity=0.143 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH-----HHHHHHHH
Q 039523 18 ELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENG-----EAWNIIAC 92 (244)
Q Consensus 18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-----~~~~~l~~ 92 (244)
++..+|.++...|++++|+..|.++++.+|.+..++..++.++...|++++|++.+.++++..|.+. ..+..+|.
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 4445555555555555555555555555554555555555555555555555555555555444331 12334455
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 93 LHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 93 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
++...|++++|+..++++++..|++..++..+|.++...|++++|+..+++++...|.
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 189 QALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence 5555555555555555555555555555555555555555555555555555554443
No 40
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.74 E-value=6.7e-16 Score=137.12 Aligned_cols=158 Identities=18% Similarity=0.203 Sum_probs=131.8
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+..|++++..+|.+..++..++.++...|++++|+..+++++..+|.+...+..++.++...|++++|...+++++...
T Consensus 518 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 597 (899)
T TIGR02917 518 AIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA 597 (899)
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 45678888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHH
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELL 158 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 158 (244)
|.++..|..+|.++...|++++|+..|+++++..|+++..+..+|.++...|++++|...++++++..|++......+
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 675 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL 675 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888888888755444333
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.73 E-value=3.4e-17 Score=127.03 Aligned_cols=165 Identities=23% Similarity=0.277 Sum_probs=113.9
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALN--SLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 78 (244)
|+++++++++.. .++..+.....++...++++++...++++.... +.++.+|..+|.++.+.|+.++|+++++++++
T Consensus 96 A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 174 (280)
T PF13429_consen 96 ALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE 174 (280)
T ss_dssp -----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666654 456777778888889999999999999877654 66788899999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHH
Q 039523 79 LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELL 158 (244)
Q Consensus 79 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 158 (244)
.+|+++.++..++.++...|+++++...+.......|+++..|..+|.++..+|++++|+.+++++++.+|+++.....+
T Consensus 175 ~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~ 254 (280)
T PF13429_consen 175 LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAY 254 (280)
T ss_dssp H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccc
Confidence 99999999999999999999999988888888888788888889999999999999999999999999999877766666
Q ss_pred HHHHHHhc
Q 039523 159 ERIVLNLE 166 (244)
Q Consensus 159 ~~~~~~~~ 166 (244)
........
T Consensus 255 a~~l~~~g 262 (280)
T PF13429_consen 255 ADALEQAG 262 (280)
T ss_dssp HHHHT---
T ss_pred cccccccc
Confidence 66554444
No 42
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.72 E-value=1.9e-15 Score=114.33 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=133.5
Q ss_pred CchHHHHHHhhccCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh---HHHHHHHHHHHc--------cCH
Q 039523 1 MMPAMKKLWKFQMISQ---LELRSLARSAYNRGEYETSKILREAAMALNSLYPD---GWFALGAAALKA--------RDV 66 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~--------g~~ 66 (244)
|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++..|+++. +++.+|.++... |++
T Consensus 52 A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~ 131 (235)
T TIGR03302 52 AIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAA 131 (235)
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHH
Confidence 4678899999999876 68899999999999999999999999999998876 689999999987 889
Q ss_pred HHHHHHHHHHHhcCCCcHHHH-----------------HHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 039523 67 EKALDVFTRAVQLDPENGEAW-----------------NIIACLHMIKNKSKEAFIAFKEALKLKRNG---WQLWENYSH 126 (244)
Q Consensus 67 ~~A~~~~~~a~~~~p~~~~~~-----------------~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~ 126 (244)
++|++.+++++..+|++..++ ..+|.++...|++.+|+..+++++...|+. +.++..+|.
T Consensus 132 ~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~ 211 (235)
T TIGR03302 132 REAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVE 211 (235)
T ss_pred HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHH
Confidence 999999999999999986542 356888999999999999999999997764 589999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 127 VALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 127 ~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
++...|++++|..+++......|+
T Consensus 212 ~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 212 AYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999998887766553
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=1.5e-16 Score=123.43 Aligned_cols=144 Identities=20% Similarity=0.225 Sum_probs=102.5
Q ss_pred HHHHHHhhc--cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523 4 AMKKLWKFQ--MISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81 (244)
Q Consensus 4 ~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 81 (244)
.++++.... |.++..|..+|.++...|+.++|+..++++++.+|+++.+...++.++...|+++++.+.+....+..|
T Consensus 132 ~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~ 211 (280)
T PF13429_consen 132 LLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAP 211 (280)
T ss_dssp HHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc
Confidence 444544433 567888889999999999999999999999999999999998899999999999988888888888888
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 82 ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
.++..|..+|.++...|++++|+.++++++..+|+++..+..+|.++...|+.++|..++.++++.
T Consensus 212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred CHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 888888889999999999999999999999999999999999999999999999999888887753
No 44
>PLN02789 farnesyltranstransferase
Probab=99.71 E-value=1.8e-15 Score=117.99 Aligned_cols=163 Identities=11% Similarity=0.021 Sum_probs=145.2
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEY--ETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 78 (244)
++..++++++.+|++..+|...+.++...|+. ++++.++.++++.+|.+..+|...+.++...|+++++++++.++++
T Consensus 91 eL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 91 ELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred HHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 46788999999999999999999999988874 7889999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHc---CCh----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Q 039523 79 LDPENGEAWNIIACLHMIK---NKS----KEAFIAFKEALKLKRNGWQLWENYSHVALD----VGNIGQALEAVQMVLNI 147 (244)
Q Consensus 79 ~~p~~~~~~~~l~~~~~~~---~~~----~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~ 147 (244)
.+|.+..+|+..+.+.... |.+ ++++.+..+++..+|++..+|..++.++.. .++..+|...+.+++..
T Consensus 171 ~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~ 250 (320)
T PLN02789 171 EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK 250 (320)
T ss_pred HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc
Confidence 9999999999999998776 333 478888899999999999999999999988 45667899999999998
Q ss_pred cCCchhhHHHHHHHHH
Q 039523 148 TNNKRIDTELLERIVL 163 (244)
Q Consensus 148 ~p~~~~~~~~l~~~~~ 163 (244)
.|+.+..+..+..+..
T Consensus 251 ~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 251 DSNHVFALSDLLDLLC 266 (320)
T ss_pred cCCcHHHHHHHHHHHH
Confidence 8887777776666654
No 45
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.70 E-value=1.5e-15 Score=104.04 Aligned_cols=113 Identities=14% Similarity=0.122 Sum_probs=101.4
Q ss_pred HHHHHhhC-CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523 39 REAAMALN-SLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG 117 (244)
Q Consensus 39 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 117 (244)
+.....+. ++.....+.+|..+...|++++|...|+.+...+|.+...|+++|.++..+|++++|+..|.+++.++|++
T Consensus 23 l~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd 102 (157)
T PRK15363 23 LRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA 102 (157)
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 34445566 77788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523 118 WQLWENYSHVALDVGNIGQALEAVQMVLNITNNK 151 (244)
Q Consensus 118 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 151 (244)
+.++.++|.|+...|+.+.|+..|+.++......
T Consensus 103 p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 103 PQAPWAAAECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999887433
No 46
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=6.5e-16 Score=115.01 Aligned_cols=118 Identities=19% Similarity=0.225 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 039523 52 GWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV 131 (244)
Q Consensus 52 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 131 (244)
-+..-|.-+++.++|.+|+..|.+||+++|+++..|.+.+.+|.++|.++.|++.++.++.++|....+|..+|.+|..+
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence 34456777778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcccc
Q 039523 132 GNIGQALEAVQMVLNITNNKRIDTELLERIVLNLEGRT 169 (244)
Q Consensus 132 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 169 (244)
|++++|++.|+++++++|++...+..|......+.+..
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 88888888888888888887777777777776666443
No 47
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=3.7e-16 Score=116.29 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM 95 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 95 (244)
++-+..-|.-++..++|.+|+..|.+||.++|.++..+++.|.+|.++|.++.|++.++.++.++|....+|..+|.++.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 039523 96 IKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIG 135 (244)
Q Consensus 96 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~ 135 (244)
.+|++++|++.|++++.++|++...+.+|..+-..++...
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999988888888877777665
No 48
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.68 E-value=4.1e-15 Score=129.84 Aligned_cols=145 Identities=15% Similarity=0.079 Sum_probs=128.1
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+..++++...+|....++..+|..+...|++++|+..++++++.+|.++.++..++.++...|++++|+..++++++.+
T Consensus 34 A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~ 113 (765)
T PRK10049 34 VITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA 113 (765)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 45677777777888888899999999999999999999999999999998889999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLN 146 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 146 (244)
|+++. +..+|.++...|++++|+..++++++..|++..++..++.++...|..++|+..++++..
T Consensus 114 P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 114 PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 99988 888999999999999999999999999999999888899988888888888888886665
No 49
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.67 E-value=1.2e-14 Score=106.31 Aligned_cols=161 Identities=19% Similarity=0.148 Sum_probs=141.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH
Q 039523 5 MKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENG 84 (244)
Q Consensus 5 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 84 (244)
+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+......+|...++.|++.+|+..+.++....|+++
T Consensus 56 l~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~ 134 (257)
T COG5010 56 LGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW 134 (257)
T ss_pred HHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh
Confidence 34556678999999 99999999999999999999999888999988888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHH
Q 039523 85 EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLN 164 (244)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 164 (244)
.+|..+|.+|.+.|++++|...|.+++++.|+++.+..++|..+.-.|+++.|..++..+....+.+......+....+.
T Consensus 135 ~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~ 214 (257)
T COG5010 135 EAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGL 214 (257)
T ss_pred hhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999987777666555666655554
Q ss_pred hc
Q 039523 165 LE 166 (244)
Q Consensus 165 ~~ 166 (244)
..
T Consensus 215 ~g 216 (257)
T COG5010 215 QG 216 (257)
T ss_pred cC
Confidence 44
No 50
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=1.9e-14 Score=104.71 Aligned_cols=164 Identities=13% Similarity=0.006 Sum_probs=144.4
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523 2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81 (244)
Q Consensus 2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 81 (244)
-.|+++....-|++.++....|..+...|++++|+++|+..++.+|.+..++.....+....|+-.+|++.+...++..+
T Consensus 72 q~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~ 151 (289)
T KOG3060|consen 72 QKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM 151 (289)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc
Confidence 35666666667999999999999999999999999999999999999998888888888889999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhcCCchhhHHHH
Q 039523 82 ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG---NIGQALEAVQMVLNITNNKRIDTELL 158 (244)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l 158 (244)
.+.++|..++.+|...|+|++|.-++++.+-+.|-++.....+|.+++.+| +.+.|..+|.++++++|.+...+-.+
T Consensus 152 ~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 152 NDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887 67789999999999999654444444
Q ss_pred HHHHHHh
Q 039523 159 ERIVLNL 165 (244)
Q Consensus 159 ~~~~~~~ 165 (244)
..-...+
T Consensus 232 ~lc~~~l 238 (289)
T KOG3060|consen 232 YLCGSAL 238 (289)
T ss_pred HHHHHHH
Confidence 4433333
No 51
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=4.7e-16 Score=116.98 Aligned_cols=162 Identities=15% Similarity=0.167 Sum_probs=142.7
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+..|.+.++..|.+...+..+++++..++++++|.++|+.+++.+|.+.++.-.+|..|+-.++.+-|+.+|.+.++..
T Consensus 275 AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG 354 (478)
T KOG1129|consen 275 ALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG 354 (478)
T ss_pred HHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc
Confidence 45667777888899999999999999999999999999999999999999888888888999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHH
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR---NGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTEL 157 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 157 (244)
-.++..+.++|.|++..++++-++..|++++.... .-.++|+++|.+....|++..|.++|+-++..+|++...+..
T Consensus 355 ~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnN 434 (478)
T KOG1129|consen 355 AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNN 434 (478)
T ss_pred CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHh
Confidence 99999999999999999999999999999988744 237899999999999999999999999999999997766665
Q ss_pred HHHHH
Q 039523 158 LERIV 162 (244)
Q Consensus 158 l~~~~ 162 (244)
+..+.
T Consensus 435 LavL~ 439 (478)
T KOG1129|consen 435 LAVLA 439 (478)
T ss_pred HHHHH
Confidence 55443
No 52
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.66 E-value=1e-14 Score=100.01 Aligned_cols=106 Identities=17% Similarity=0.122 Sum_probs=101.4
Q ss_pred hhc-cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHH
Q 039523 10 KFQ-MISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWN 88 (244)
Q Consensus 10 ~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 88 (244)
.+. +++-+..+.+|..++..|++++|...|+-+...+|.+...|++||.++...|++.+|+..|.+++.++|+++..+.
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 346 7788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCC
Q 039523 89 IIACLHMIKNKSKEAFIAFKEALKLKR 115 (244)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~a~~~~p 115 (244)
+.|.|+...|+.+.|.+.|+.++....
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998763
No 53
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.66 E-value=1.3e-14 Score=106.15 Aligned_cols=141 Identities=15% Similarity=0.127 Sum_probs=132.2
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc
Q 039523 4 AMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN 83 (244)
Q Consensus 4 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 83 (244)
...++...+|.+...+..+|...+..|++..|+..++++....|+++.+|..+|.+|.+.|++++|...|.+++++.|++
T Consensus 88 ~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~ 167 (257)
T COG5010 88 VLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE 167 (257)
T ss_pred HHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC
Confidence 34455556888988998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039523 84 GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMV 144 (244)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 144 (244)
+.+..++|..+.-.|+++.|..++..+....+.+..+..+++.+...+|++.+|.....+-
T Consensus 168 p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 168 PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 9999999999999999999999999999999999999999999999999999998776543
No 54
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=4.3e-16 Score=117.18 Aligned_cols=150 Identities=15% Similarity=0.204 Sum_probs=143.1
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+++|+.+++.+|.+.++...+|..|+..++.+-|+.+|++.+++.-.++..++++|.|++..+++|-++..|++++...
T Consensus 309 a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlsta 388 (478)
T KOG1129|consen 309 ALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTA 388 (478)
T ss_pred HHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred C---CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 81 P---ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 81 p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
. .-.++|+++|.+....|++..|..+|+-++..++++..++.++|.+..+.|+.++|..++..+-...|+
T Consensus 389 t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 389 TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 3 346899999999999999999999999999999999999999999999999999999999999999987
No 55
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.65 E-value=5e-14 Score=123.14 Aligned_cols=160 Identities=13% Similarity=0.082 Sum_probs=147.7
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+.++++ -..+|-++........+....|+.++|+..+.++...+|....++..+|.++...|++++|.+.++++++.+
T Consensus 1 ~~~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~ 79 (765)
T PRK10049 1 ALSWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE 79 (765)
T ss_pred Cchhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5677777 556788899899999999999999999999999999899999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLER 160 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 160 (244)
|.++.++..++.++...|++++|+..++++++..|++.. +..+|.++...|++++|+..++++++..|++......+..
T Consensus 80 P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~ 158 (765)
T PRK10049 80 PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQ 158 (765)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999997665554444
Q ss_pred HH
Q 039523 161 IV 162 (244)
Q Consensus 161 ~~ 162 (244)
+.
T Consensus 159 ~l 160 (765)
T PRK10049 159 AL 160 (765)
T ss_pred HH
Confidence 43
No 56
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.61 E-value=3.8e-14 Score=112.96 Aligned_cols=113 Identities=16% Similarity=0.170 Sum_probs=107.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 039523 19 LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKN 98 (244)
Q Consensus 19 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 98 (244)
+...|...+..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 039523 99 KSKEAFIAFKEALKLKRNGWQLWENYSHVALDV 131 (244)
Q Consensus 99 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 131 (244)
++++|+..|++++.++|++..+...++.|...+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999988886655
No 57
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.61 E-value=1e-13 Score=120.22 Aligned_cols=165 Identities=10% Similarity=0.010 Sum_probs=122.9
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+..|+++++.+|.++.....++.++...|+.++|+.++++++...|........+|.++...|++++|++.|+++++.+
T Consensus 53 Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d 132 (822)
T PRK14574 53 VLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD 132 (822)
T ss_pred HHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 56778888888888864444777777788888888888888883334444445555778888888888888888888888
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLER 160 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 160 (244)
|+++.++..++.++...++.++|+..++++...+|..... ..++.++...++..+|+..++++++.+|++......+..
T Consensus 133 P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~ 211 (822)
T PRK14574 133 PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLE 211 (822)
T ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 8888888888888888888888888888888888875444 555666656677767888888888888886555444444
Q ss_pred HHHHhc
Q 039523 161 IVLNLE 166 (244)
Q Consensus 161 ~~~~~~ 166 (244)
.+....
T Consensus 212 ~l~~~~ 217 (822)
T PRK14574 212 ILQRNR 217 (822)
T ss_pred HHHHcC
Confidence 444333
No 58
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.61 E-value=2.6e-13 Score=107.33 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=140.0
Q ss_pred ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 039523 12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIA 91 (244)
Q Consensus 12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 91 (244)
.|....+++..+..++..|++++|+..++..+...|+|+..+...+.+++..|+.++|.+.+++++..+|+.+..++++|
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHh
Q 039523 92 CLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNL 165 (244)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 165 (244)
.++.+.|++.+|+..+...+..+|+++..|..++..|..+|+..++...+.+...+..+.......+....+.+
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999888888887766444444444444433
No 59
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.58 E-value=1.9e-13 Score=115.51 Aligned_cols=165 Identities=15% Similarity=0.145 Sum_probs=124.9
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNR---GEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAV 77 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 77 (244)
|+..|+++++++|.++.++..||.+-... ..+..+...+.++...++.+|.++..++.-++..|+|..+..+...++
T Consensus 218 a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 218 ALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 34567777777777777777777665543 346667777777777777777777777877778888888877777777
Q ss_pred hcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchh
Q 039523 78 QLDPEN---GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG-WQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRI 153 (244)
Q Consensus 78 ~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 153 (244)
...-.. ...++.+|.++..+|++++|..+|.++++.+|++ ...++.+|..+...|+++.|..+|+++++..|+...
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e 377 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE 377 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH
Confidence 655332 3457888888888888888888888888888877 777888888888888888888888888888888777
Q ss_pred hHHHHHHHHHHh
Q 039523 154 DTELLERIVLNL 165 (244)
Q Consensus 154 ~~~~l~~~~~~~ 165 (244)
....++.+....
T Consensus 378 tm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 378 TMKILGCLYAHS 389 (1018)
T ss_pred HHHHHHhHHHhh
Confidence 777666665554
No 60
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.58 E-value=1.1e-13 Score=113.97 Aligned_cols=162 Identities=35% Similarity=0.586 Sum_probs=145.6
Q ss_pred hHHHHHHhh-ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523 3 PAMKKLWKF-QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81 (244)
Q Consensus 3 ~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 81 (244)
.+|++|+++ +-.++.+...+|......++|.++.+.++..++++|-....|+.+|.+..+.++++.|.++|...+..+|
T Consensus 471 s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P 550 (777)
T KOG1128|consen 471 SLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP 550 (777)
T ss_pred HHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 578899888 4457788888888888999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHH
Q 039523 82 ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERI 161 (244)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 161 (244)
++..+|.+++..|.+.|+-.+|...+.++++.+-.++.+|.|...+....|.+++|+..+.+.+.+..+.. +...+..+
T Consensus 551 d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~-d~~vl~~i 629 (777)
T KOG1128|consen 551 DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK-DDEVLLII 629 (777)
T ss_pred CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc-cchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988755433 44444444
Q ss_pred HHHh
Q 039523 162 VLNL 165 (244)
Q Consensus 162 ~~~~ 165 (244)
....
T Consensus 630 v~~~ 633 (777)
T KOG1128|consen 630 VRTV 633 (777)
T ss_pred HHHH
Confidence 4333
No 61
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.57 E-value=2.8e-13 Score=102.88 Aligned_cols=155 Identities=15% Similarity=0.154 Sum_probs=129.1
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+..|..|++.+|++..+++..|.+|..+|+-..|+.-+.+.+++.|+...+....|.+++++|++++|...|..+++.+
T Consensus 57 ALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~ 136 (504)
T KOG0624|consen 57 ALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE 136 (504)
T ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC
Confidence 46678888888888888888888888888888888888888888888888888888888888888888888888888777
Q ss_pred CCc-------------------------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 039523 81 PEN-------------------------------------------------GEAWNIIACLHMIKNKSKEAFIAFKEAL 111 (244)
Q Consensus 81 p~~-------------------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 111 (244)
|++ +..+...+.||...|+...|+.-++.+-
T Consensus 137 ~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~as 216 (504)
T KOG0624|consen 137 PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQAS 216 (504)
T ss_pred CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 643 2345566778888888888888888888
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhH
Q 039523 112 KLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDT 155 (244)
Q Consensus 112 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 155 (244)
++..++....+.++.+++..|+.+.++.-.+++++++|++....
T Consensus 217 kLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf 260 (504)
T KOG0624|consen 217 KLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCF 260 (504)
T ss_pred hccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHH
Confidence 88888889999999999999999999999999999999955443
No 62
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.57 E-value=6.9e-13 Score=111.45 Aligned_cols=135 Identities=21% Similarity=0.367 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM 95 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 95 (244)
...+...|+..+..|++++|...+.++++.+|.++.+|+.||.+|...|+..+|....-.|-.++|.+.+.|..++....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 45677888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 96 IKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 96 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
.+|.+++|.-+|.+|++.+|.+....+..+.+|.+.|+...|...|.+.+...|.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP 273 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence 9999999999999999999999999999999999999999999999999999983
No 63
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.9e-13 Score=108.95 Aligned_cols=148 Identities=20% Similarity=0.196 Sum_probs=121.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhC--------------------------CCChhHHHHHHHHHHHccCHHHHHH
Q 039523 18 ELRSLARSAYNRGEYETSKILREAAMALN--------------------------SLYPDGWFALGAAALKARDVEKALD 71 (244)
Q Consensus 18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------------------p~~~~~~~~la~~~~~~g~~~~A~~ 71 (244)
+...+|..+...++++.|+.+|.+++... |.-...-..-|..+++.|+|..|+.
T Consensus 300 ~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 300 ALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVK 379 (539)
T ss_pred HHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHH
Confidence 34446777777788888888887776543 3233334566888999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523 72 VFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK 151 (244)
Q Consensus 72 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 151 (244)
.|.++++.+|+++..|.+.|.||.++|.+..|+..++.+++++|+....|...|.++..+.+|++|.+.|.++++++|+.
T Consensus 380 ~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 380 HYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN 459 (539)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred hhhHHHHHHHHHHh
Q 039523 152 RIDTELLERIVLNL 165 (244)
Q Consensus 152 ~~~~~~l~~~~~~~ 165 (244)
......+.+.....
T Consensus 460 ~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 460 AEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666655543
No 64
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=8.4e-14 Score=107.79 Aligned_cols=160 Identities=18% Similarity=0.185 Sum_probs=141.6
Q ss_pred HHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh------------HHHHHHHHHHHccCHHHHHHHH
Q 039523 6 KKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPD------------GWFALGAAALKARDVEKALDVF 73 (244)
Q Consensus 6 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------------~~~~la~~~~~~g~~~~A~~~~ 73 (244)
-..+++++.+.++++..|.+++..++.++|+..|.+++.++|++.. .|..-|.-.++.|++.+|.++|
T Consensus 193 ~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Y 272 (486)
T KOG0550|consen 193 IDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECY 272 (486)
T ss_pred HHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHH
Confidence 3456779999999999999999999999999999999999998643 5677788899999999999999
Q ss_pred HHHHhcCCCc----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 039523 74 TRAVQLDPEN----GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITN 149 (244)
Q Consensus 74 ~~a~~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 149 (244)
..++.++|++ ...|.+++.+..++|+.++|+..+..++.++|....++...|.|+..+++|++|++.|+++++...
T Consensus 273 teal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 273 TEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999975 457899999999999999999999999999999999999999999999999999999999999876
Q ss_pred CchhhHHHHHHHHHHhc
Q 039523 150 NKRIDTELLERIVLNLE 166 (244)
Q Consensus 150 ~~~~~~~~l~~~~~~~~ 166 (244)
+ ......+......+.
T Consensus 353 s-~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 353 D-CEIRRTLREAQLALK 368 (486)
T ss_pred c-cchHHHHHHHHHHHH
Confidence 6 444555555544444
No 65
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.56 E-value=2.1e-13 Score=108.72 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=107.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 039523 53 WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG 132 (244)
Q Consensus 53 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~ 132 (244)
+...|..++..|++++|+.+|.++++.+|+++.+++++|.++...|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcc
Q 039523 133 NIGQALEAVQMVLNITNNKRIDTELLERIVLNLEG 167 (244)
Q Consensus 133 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 167 (244)
++++|+..|+++++++|++......+......+..
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999988777777777666643
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=4e-13 Score=107.74 Aligned_cols=167 Identities=14% Similarity=0.114 Sum_probs=124.5
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523 2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81 (244)
Q Consensus 2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 81 (244)
.++|.|+..++|....+|...|..+...|+.++|+.+|..|-+.-|....-...+|.-|.+.+++.-|.+.|.+++.+.|
T Consensus 332 Rry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P 411 (611)
T KOG1173|consen 332 RRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP 411 (611)
T ss_pred HHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 45666666666666677777777777777777777777777666666655556667777777788888888888888889
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhh
Q 039523 82 ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR-------NGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRID 154 (244)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 154 (244)
.+|-++..+|.+.+..+.|.+|..+|+.++..-+ .....+.++|.++.+++.+++|+.++++++.+.|.+...
T Consensus 412 ~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~ 491 (611)
T KOG1173|consen 412 SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAST 491 (611)
T ss_pred CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhH
Confidence 9999999999999999999999999988884321 124568899999999999999999999999999986543
Q ss_pred H---HHHHHHHHHhccc
Q 039523 155 T---ELLERIVLNLEGR 168 (244)
Q Consensus 155 ~---~~l~~~~~~~~~~ 168 (244)
. +.+..+.+++..+
T Consensus 492 ~asig~iy~llgnld~A 508 (611)
T KOG1173|consen 492 HASIGYIYHLLGNLDKA 508 (611)
T ss_pred HHHHHHHHHHhcChHHH
Confidence 3 3344455555433
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=7.7e-13 Score=102.68 Aligned_cols=165 Identities=13% Similarity=0.069 Sum_probs=141.0
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHH---------
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALD--------- 71 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--------- 71 (244)
|+.+-+|+++.+|.+..++...|..+...|+.++|+-.|+.+..+.|.....+..+..+|+..|.+.+|.-
T Consensus 319 AL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~ 398 (564)
T KOG1174|consen 319 ALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF 398 (564)
T ss_pred HHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh
Confidence 45667888999999999999999999999999999999999999999999999999888888777665554
Q ss_pred ---------------------------HHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 039523 72 ---------------------------VFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENY 124 (244)
Q Consensus 72 ---------------------------~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 124 (244)
.++++++++|....+...++.++...|.+++++..+++.+...|+. ..+..+
T Consensus 399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~L 477 (564)
T KOG1174|consen 399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHL 477 (564)
T ss_pred hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHH
Confidence 4445566667777788888888999999999999999999988864 578889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523 125 SHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE 166 (244)
Q Consensus 125 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 166 (244)
|.++...+.+++|.++|..+++++|++......+.++.....
T Consensus 478 gd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 478 GDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence 999999999999999999999999998888887777765544
No 68
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.7e-12 Score=97.46 Aligned_cols=136 Identities=22% Similarity=0.234 Sum_probs=121.4
Q ss_pred CHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---hHHHHHHH
Q 039523 31 EYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK---SKEAFIAF 107 (244)
Q Consensus 31 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~---~~~A~~~~ 107 (244)
+.+.-+.-++..+..+|++..-|..||.+|+..|+++.|...|.+++++.|++++.+..+|.++..+.+ ..++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 356667788888999999999999999999999999999999999999999999999999998876543 57899999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523 108 KEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE 166 (244)
Q Consensus 108 ~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 166 (244)
++++..+|++..+...+|..++..|+|.+|...|+..++..|.+......+++......
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~~ 275 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARAL 275 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999886666666666554443
No 69
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=7.3e-13 Score=104.20 Aligned_cols=163 Identities=17% Similarity=0.029 Sum_probs=116.5
Q ss_pred hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 039523 3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPE 82 (244)
Q Consensus 3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 82 (244)
.+|-+...+--+++++++.++.+|..+.+...|++++.++..+-|+++.++..+|.+|.+.|+-..|.+++-...+..|.
T Consensus 545 d~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~ 624 (840)
T KOG2003|consen 545 DCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPC 624 (840)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCc
Confidence 34444433344556666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 039523 83 NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIV 162 (244)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 162 (244)
+..+.--+|..|....-+++|+.+|+++.-+.|+.......++.|+.+.|+|..|.+.|+..-+..|.+...+..+-++.
T Consensus 625 nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~ 704 (840)
T KOG2003|consen 625 NIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIA 704 (840)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHh
Confidence 66666666666667667788999999998899988888888899999999999999999999999998666655555544
Q ss_pred HHh
Q 039523 163 LNL 165 (244)
Q Consensus 163 ~~~ 165 (244)
+.+
T Consensus 705 ~dl 707 (840)
T KOG2003|consen 705 GDL 707 (840)
T ss_pred ccc
Confidence 433
No 70
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.55 E-value=3e-13 Score=108.55 Aligned_cols=147 Identities=16% Similarity=0.140 Sum_probs=112.6
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039523 2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAM----ALNSLYPDGWFALGAAALKARDVEKALDVFTRAV 77 (244)
Q Consensus 2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 77 (244)
++.++++++.+|++..++.. +..+...|++..+.....+++ ..+|....+...+|.++...|++++|...+++++
T Consensus 63 ~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 141 (355)
T cd05804 63 LALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRAL 141 (355)
T ss_pred HHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677777777777766654 444444444333333333333 3455555666778889999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 039523 78 QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGW----QLWENYSHVALDVGNIGQALEAVQMVLNITN 149 (244)
Q Consensus 78 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 149 (244)
+.+|+++.++..+|.++...|++++|+.++++++...|.++ ..+..++.++...|++++|+..+++++...|
T Consensus 142 ~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 142 ELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999876432 3466789999999999999999999887666
No 71
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.54 E-value=5.5e-13 Score=112.86 Aligned_cols=158 Identities=18% Similarity=0.197 Sum_probs=141.2
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523 2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQ 78 (244)
Q Consensus 2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 78 (244)
+.++.++...+|.+|.++..|+..++..|+|..+......++...... ...++.+|.++...|+|++|..+|.++++
T Consensus 256 ~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k 335 (1018)
T KOG2002|consen 256 VQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK 335 (1018)
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc
Confidence 567889999999999999999999999999999999999999876433 45699999999999999999999999999
Q ss_pred cCCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhhcCCchh
Q 039523 79 LDPEN-GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG----NIGQALEAVQMVLNITNNKRI 153 (244)
Q Consensus 79 ~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~~~p~~~~ 153 (244)
.+|++ .-.++.+|+.+...|+++.|+.+|++++...|++......+|.+|...+ ..+.|..+..++++..|.+..
T Consensus 336 ~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~ 415 (1018)
T KOG2002|consen 336 ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSE 415 (1018)
T ss_pred cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHH
Confidence 99988 6778899999999999999999999999999999999999999998886 667889999999999888554
Q ss_pred hHHHHH
Q 039523 154 DTELLE 159 (244)
Q Consensus 154 ~~~~l~ 159 (244)
++-.+.
T Consensus 416 a~l~la 421 (1018)
T KOG2002|consen 416 AWLELA 421 (1018)
T ss_pred HHHHHH
Confidence 444433
No 72
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=1.4e-12 Score=98.19 Aligned_cols=149 Identities=18% Similarity=0.150 Sum_probs=103.9
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------------------------------
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLY------------------------------- 49 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------------------------------- 49 (244)
|+..|-..++.+|...++...||+.|.+.|..|.|+...+..+.. |+.
T Consensus 54 AvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~ 132 (389)
T COG2956 54 AVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQ 132 (389)
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 456777777778888888888888888888877777765554432 211
Q ss_pred --------hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 039523 50 --------PDGWFALGAAALKARDVEKALDVFTRAVQLDPEN-----GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN 116 (244)
Q Consensus 50 --------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 116 (244)
..+...+..+|....+|++|++.-++..++.|.. +..+..++..+....+.+.|+..+.++++.+|+
T Consensus 133 L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~ 212 (389)
T COG2956 133 LVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK 212 (389)
T ss_pred HhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc
Confidence 2234444555555555555555555555555543 345666777777777788888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 117 GWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 117 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
+..+-..+|.++...|+|+.|++.++.+++.+|+
T Consensus 213 cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 213 CVRASIILGRVELAKGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred ceehhhhhhHHHHhccchHHHHHHHHHHHHhChH
Confidence 8888888888888888888888888888888777
No 73
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=3.2e-13 Score=107.73 Aligned_cols=135 Identities=17% Similarity=0.146 Sum_probs=123.5
Q ss_pred hhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHH
Q 039523 10 KFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNI 89 (244)
Q Consensus 10 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 89 (244)
-++|.-...-...|+.++..|+|..|+..|.+++..+|+++..+.+.|.||.+.|++..|+..++++++++|+...+|..
T Consensus 352 ~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~R 431 (539)
T KOG0548|consen 352 YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLR 431 (539)
T ss_pred hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHH
Confidence 34777777788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039523 90 IACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMV 144 (244)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 144 (244)
.|.++..+.+|++|.+.|.++++.+|++..+...+..|...+.......+..+++
T Consensus 432 Kg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~ 486 (539)
T KOG0548|consen 432 KGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRRA 486 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHhh
Confidence 9999999999999999999999999999999999999988765555555555553
No 74
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.53 E-value=5.1e-13 Score=113.91 Aligned_cols=120 Identities=13% Similarity=-0.021 Sum_probs=114.3
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|..+++.+++..|++..++..++.++.+.+++++|+..+++++..+|+++.+.+.+|.++.+.|++++|..+|++++..+
T Consensus 105 a~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~ 184 (694)
T PRK15179 105 GLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQH 184 (694)
T ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQL 120 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 120 (244)
|+++.++..+|.++...|+.++|...|++++....+-...
T Consensus 185 p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 185 PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 9999999999999999999999999999999987655444
No 75
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.52 E-value=1.7e-12 Score=112.70 Aligned_cols=145 Identities=11% Similarity=-0.047 Sum_probs=130.1
Q ss_pred hhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHH
Q 039523 10 KFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNI 89 (244)
Q Consensus 10 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 89 (244)
-..|..+...+..+.+.++.|+++.|+..|+++++.+|.++.....++.++...|+.++|+.++++++.-.|........
T Consensus 28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~lla 107 (822)
T PRK14574 28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLAS 107 (822)
T ss_pred ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHH
Confidence 34789999999999999999999999999999999999997555589999999999999999999999444445555555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhh
Q 039523 90 IACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRID 154 (244)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 154 (244)
+|.++..+|++++|++.|+++++.+|+++.++..++..+...++.++|+..++++...+|+....
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~ 172 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY 172 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH
Confidence 58899999999999999999999999999999999999999999999999999999999985443
No 76
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.52 E-value=2.6e-12 Score=108.09 Aligned_cols=148 Identities=19% Similarity=0.158 Sum_probs=135.8
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|++++.++++.+|.++.+|+.||.+|.++|+.+++..++..|-.++|.+...|..++....+.|++++|.-+|.++++.+
T Consensus 158 A~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~ 237 (895)
T KOG2076|consen 158 AEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN 237 (895)
T ss_pred HHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG-----WQLWENYSHVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
|.+....+..+.++.++|+...|...|.+++...|.. -......+..+...++-+.|+..++.++...
T Consensus 238 p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 238 PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999832 1233445777888888899999999998843
No 77
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=2.5e-12 Score=96.88 Aligned_cols=148 Identities=17% Similarity=0.188 Sum_probs=131.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-----hhHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 039523 5 MKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLY-----PDGWFALGAAALKARDVEKALDVFTRAVQL 79 (244)
Q Consensus 5 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 79 (244)
|....+....-..+...|..+|....+|++|++..++..+..+.. +..++.+|..+....+.+.|...+.++++.
T Consensus 130 f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa 209 (389)
T COG2956 130 FNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA 209 (389)
T ss_pred HHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence 333333333456788899999999999999999999999998765 457899999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523 80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG-WQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR 152 (244)
Q Consensus 80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 152 (244)
+|++..+-+.+|.+....|+|..|++.++.+++.+|.. +.+...+..||..+|+.++....+.++.+..++..
T Consensus 210 ~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 210 DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 99999999999999999999999999999999999986 67888999999999999999999999999988744
No 78
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.51 E-value=1.2e-12 Score=108.51 Aligned_cols=138 Identities=20% Similarity=0.208 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM 95 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 95 (244)
...|...|..+...+..++|..++.++-.++|..+..|+..|.++...|++.+|.+.|..++.++|+++.....+|.++.
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchh
Q 039523 96 IKNKSKEAFI--AFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRI 153 (244)
Q Consensus 96 ~~~~~~~A~~--~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 153 (244)
..|+-.-|.. .+..+++++|.++.+|+.+|.++...|+.+.|.++|..++.+.+..|+
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999888888 999999999999999999999999999999999999999999887653
No 79
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.51 E-value=1.5e-12 Score=87.65 Aligned_cols=103 Identities=15% Similarity=0.108 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHHHHHH
Q 039523 17 LELRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQLDPEN---GEAWNII 90 (244)
Q Consensus 17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l 90 (244)
..++.+|..+...|++++|+..+.+++...|++ +.+++.+|.++...|++++|+..+++++..+|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 445666666666666666666666666666544 3455566666666666666666666666655543 4456666
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCHH
Q 039523 91 ACLHMIKNKSKEAFIAFKEALKLKRNGWQ 119 (244)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 119 (244)
|.++...|++++|...+.+++...|++..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 66666666666666666666666665544
No 80
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.50 E-value=1.3e-12 Score=87.92 Aligned_cols=107 Identities=16% Similarity=0.149 Sum_probs=97.7
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHH
Q 039523 50 PDGWFALGAAALKARDVEKALDVFTRAVQLDPEN---GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG---WQLWEN 123 (244)
Q Consensus 50 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~ 123 (244)
+..++.+|..+...|++++|.+.|.+++..+|++ +.+++.+|.++...|+++.|+..+++++...|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578899999999999999999999999998876 5789999999999999999999999999998875 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHH
Q 039523 124 YSHVALDVGNIGQALEAVQMVLNITNNKRIDTE 156 (244)
Q Consensus 124 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 156 (244)
+|.++...|++++|..++.++++..|++.....
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999999999999999765443
No 81
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=9.1e-12 Score=90.91 Aligned_cols=151 Identities=12% Similarity=0.055 Sum_probs=137.5
Q ss_pred ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 039523 12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIA 91 (244)
Q Consensus 12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 91 (244)
.|+-...+-....+....|+.+.|..++++.-...|.+..+....|..+...|++++|+++|+..+.-+|.+...+-..-
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl 127 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL 127 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence 45556666777788889999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 039523 92 CLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIV 162 (244)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 162 (244)
.+...+|+--+|++.+...++..+++.++|..++.+|...|+|++|..|+++.+-+.|-++.....+....
T Consensus 128 Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~ 198 (289)
T KOG3060|consen 128 AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVL 198 (289)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999776666655543
No 82
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.50 E-value=7.2e-13 Score=108.26 Aligned_cols=148 Identities=21% Similarity=0.239 Sum_probs=125.4
Q ss_pred CchHHHHHHhh--------ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--------CCChhHHHHHHHHHHHcc
Q 039523 1 MMPAMKKLWKF--------QMISQLELRSLARSAYNRGEYETSKILREAAMALN--------SLYPDGWFALGAAALKAR 64 (244)
Q Consensus 1 Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g 64 (244)
|+.+++.|++. +|.-......+|..|..++++++|+..|++++.+. |..+.++.+||.+|...|
T Consensus 218 A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~G 297 (508)
T KOG1840|consen 218 AEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQG 297 (508)
T ss_pred HHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccC
Confidence 45677778777 55555666679999999999999999999999863 334567899999999999
Q ss_pred CHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CCCHHHHHHHHHHH
Q 039523 65 DVEKALDVFTRAVQLD--------PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK--------RNGWQLWENYSHVA 128 (244)
Q Consensus 65 ~~~~A~~~~~~a~~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~la~~~ 128 (244)
++++|..++++++.+. |.-+..+.+++.++..++++++|+.++++++++. +.-+..+.++|.++
T Consensus 298 Kf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~ 377 (508)
T KOG1840|consen 298 KFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELY 377 (508)
T ss_pred ChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 9999999999998863 2334578889999999999999999999998762 23467899999999
Q ss_pred HHcCCHHHHHHHHHHHHhhc
Q 039523 129 LDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 129 ~~~~~~~~A~~~~~~al~~~ 148 (244)
..+|++++|.+++++++.+.
T Consensus 378 ~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 378 LKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHhcchhHHHHHHHHHHHHH
Confidence 99999999999999999875
No 83
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.49 E-value=4.8e-12 Score=102.80 Aligned_cols=151 Identities=11% Similarity=0.081 Sum_probs=94.8
Q ss_pred hHHHHHHhhccCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHh---
Q 039523 3 PAMKKLWKFQMISQLE-LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ--- 78 (244)
Q Consensus 3 ~~~~~al~~~p~~~~~-~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--- 78 (244)
.+|+++.+.+|++..+ ....+.++...|++++|...++++.+.+|+++.++..++.++...|++++|.+.+.+..+
T Consensus 139 ~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~ 218 (398)
T PRK10747 139 QHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV 218 (398)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence 4555565555554322 223355666666666666666666666666666666666666666666665533332221
Q ss_pred ---------------------------------------cCCCcHHHHHHHHHHHHHcCCh-------------------
Q 039523 79 ---------------------------------------LDPENGEAWNIIACLHMIKNKS------------------- 100 (244)
Q Consensus 79 ---------------------------------------~~p~~~~~~~~l~~~~~~~~~~------------------- 100 (244)
..|+++.++..++..+...|+.
T Consensus 219 ~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l 298 (398)
T PRK10747 219 GDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERL 298 (398)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence 1133455555555555544444
Q ss_pred ------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchh
Q 039523 101 ------------KEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRI 153 (244)
Q Consensus 101 ------------~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 153 (244)
+++++.+++.++.+|+++..+..+|.++...|++++|..+|+++++..|+...
T Consensus 299 ~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 299 VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD 363 (398)
T ss_pred HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence 45555555555566888888999999999999999999999999999998553
No 84
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=4.1e-13 Score=105.56 Aligned_cols=148 Identities=15% Similarity=0.155 Sum_probs=126.1
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc
Q 039523 4 AMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN 83 (244)
Q Consensus 4 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 83 (244)
+-..|+..+..++.++.+.|++.+..|++++|.+.|++++..+.....+++++|..+..+|+.++|+++|-+.-.+--++
T Consensus 478 yad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn 557 (840)
T KOG2003|consen 478 YADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN 557 (840)
T ss_pred HHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh
Confidence 44567777778888888888888888999999999999988888888888888888888899999988888887777788
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523 84 GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK 151 (244)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 151 (244)
..+++.++.+|..+.+..+|++++-++..+-|+++.++..+|.+|-..|+-..|.+++-...+..|-+
T Consensus 558 ~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~n 625 (840)
T KOG2003|consen 558 AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN 625 (840)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcc
Confidence 88888888888888888888888888888888888888888888888888888888877777777763
No 85
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.48 E-value=2.9e-12 Score=92.06 Aligned_cols=120 Identities=21% Similarity=0.185 Sum_probs=89.4
Q ss_pred cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHH
Q 039523 13 MISQLELRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNI 89 (244)
Q Consensus 13 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 89 (244)
+..+..++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+.+++...|.+...+..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3456667788888888888888888888888766543 3577788888888888888888888888888888777778
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523 90 IACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR 152 (244)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 152 (244)
+|.++...|+...+...+..++. .+++|..++++++..+|++.
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchhH
Confidence 88888777776666655544432 26778888888888888853
No 86
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.48 E-value=5.4e-12 Score=102.94 Aligned_cols=144 Identities=17% Similarity=0.059 Sum_probs=123.5
Q ss_pred hHHHHHHhhcc----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHH--HHHHHHHHHccCHHHHHHHHHHH
Q 039523 3 PAMKKLWKFQM----ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGW--FALGAAALKARDVEKALDVFTRA 76 (244)
Q Consensus 3 ~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g~~~~A~~~~~~a 76 (244)
+.+.++++..| +++..+..+|..+...|++++|...++++++..|++.... ..........++.+++.+.++++
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence 35566677667 5899999999999999999999999999999999887532 23333445568899999999999
Q ss_pred HhcCCCcH--HHHHHHHHHHHHcCChHHHHHHHH--HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 77 VQLDPENG--EAWNIIACLHMIKNKSKEAFIAFK--EALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 77 ~~~~p~~~--~~~~~l~~~~~~~~~~~~A~~~~~--~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
++..|+++ .....+|.++.+.|++++|.++|+ .+++..|+... +..+|.++...|+.++|..+|++++..
T Consensus 326 lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 326 AKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999 888899999999999999999999 57778887655 559999999999999999999998764
No 87
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.3e-12 Score=96.75 Aligned_cols=115 Identities=19% Similarity=0.170 Sum_probs=107.0
Q ss_pred hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccC---HHHHHHHHHHHHhc
Q 039523 3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARD---VEKALDVFTRAVQL 79 (244)
Q Consensus 3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~ 79 (244)
.-++.-+..+|+|++.|..||.+|+..|+++.|...|.+++++.|+++..+..+|.++....+ ..++...++++++.
T Consensus 143 a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 143 ARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 345677888999999999999999999999999999999999999999999999999887654 56899999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523 80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG 117 (244)
Q Consensus 80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 117 (244)
+|++..+.+.+|..++..|+|.+|...++..+...|.+
T Consensus 223 D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 223 DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999998765
No 88
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.48 E-value=5e-12 Score=103.32 Aligned_cols=166 Identities=11% Similarity=0.031 Sum_probs=139.7
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+++++++++..|+....|..+|+++.++++.+.|...|...++..|..+..|..++.+-.+.|+.-.|...++++.-.+
T Consensus 670 A~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 670 ALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 46778888888888888888889998888888889888888888888888888888888888888888888888888888
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------------------------------HHHHHHHHHHHHH
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG------------------------------WQLWENYSHVALD 130 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------------------------------~~~~~~la~~~~~ 130 (244)
|.+...|......-.+.|..+.|.....+|++-.|++ +.++...|..+..
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~ 829 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWS 829 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHH
Confidence 9888888888888888888888888888888776644 3456677778888
Q ss_pred cCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523 131 VGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE 166 (244)
Q Consensus 131 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 166 (244)
..+++.|+..|.++++.+|+.+..+..+.+......
T Consensus 830 e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 830 EKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred HHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhC
Confidence 888999999999999999998888887777665554
No 89
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.47 E-value=1.6e-11 Score=97.37 Aligned_cols=148 Identities=18% Similarity=0.124 Sum_probs=128.5
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|.+.++..+...|+++..+-..+.+++..++..+|.+.+++++..+|+.+..+.++|..+++.|++++|+..++..+..+
T Consensus 325 A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 325 ALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence 45667788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLER 160 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 160 (244)
|+++..|..++..|..+|+..++... .+..+...|++++|+..+..+.+...-....+.....
T Consensus 405 p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~da 467 (484)
T COG4783 405 PEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMRASQQVKLGFPDWARADA 467 (484)
T ss_pred CCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 99999999999999999998777654 4667788899999999999998877444444554444
Q ss_pred HHHHh
Q 039523 161 IVLNL 165 (244)
Q Consensus 161 ~~~~~ 165 (244)
.+..+
T Consensus 468 ri~~~ 472 (484)
T COG4783 468 RIDQL 472 (484)
T ss_pred HHHHH
Confidence 44433
No 90
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.46 E-value=1.2e-11 Score=100.93 Aligned_cols=163 Identities=7% Similarity=0.007 Sum_probs=109.2
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------------------------------------
Q 039523 2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMAL------------------------------------ 45 (244)
Q Consensus 2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------------------------------ 45 (244)
+..+++.++.+|+++.++..++.++...|++++|...+.+..+.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 45566677777777777777777777777777666655544422
Q ss_pred --CC----CChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHH--HHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523 46 --NS----LYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAW--NIIACLHMIKNKSKEAFIAFKEALKLKRNG 117 (244)
Q Consensus 46 --~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~--~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 117 (244)
.| +++.++..+|..+...|++++|.+.++++++..|++.... ..........++.+.+.+.++++++..|++
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~ 332 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK 332 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC
Confidence 12 2455566667777777777777777777777777766421 222223334466777777777777778888
Q ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhcCCchhhHHHHHHHHHHh
Q 039523 118 W--QLWENYSHVALDVGNIGQALEAVQ--MVLNITNNKRIDTELLERIVLNL 165 (244)
Q Consensus 118 ~--~~~~~la~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~ 165 (244)
+ .....+|+++...|++++|.++|+ .+++..|+... ...+..+....
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~ 383 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQA 383 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHc
Confidence 8 777788888888888888888888 57777777543 33444444433
No 91
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.46 E-value=2.3e-12 Score=82.59 Aligned_cols=97 Identities=30% Similarity=0.448 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 039523 19 LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKN 98 (244)
Q Consensus 19 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 98 (244)
++.+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|.+++++++...|.+..++..+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 44455555555555555555555555555444455555555555555555555555555555554445555555555555
Q ss_pred ChHHHHHHHHHHHhcCC
Q 039523 99 KSKEAFIAFKEALKLKR 115 (244)
Q Consensus 99 ~~~~A~~~~~~a~~~~p 115 (244)
+++.|...+.+++...|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 55555555554444443
No 92
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.46 E-value=2.2e-12 Score=82.68 Aligned_cols=99 Identities=27% Similarity=0.420 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 039523 52 GWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV 131 (244)
Q Consensus 52 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 131 (244)
+++.+|.++...|++++|+..+.++++..|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCC
Q 039523 132 GNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 132 ~~~~~A~~~~~~al~~~p~ 150 (244)
|+++.|...+.++++..|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988774
No 93
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.46 E-value=4.7e-12 Score=90.69 Aligned_cols=122 Identities=15% Similarity=0.122 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHhhCCCC--hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHH
Q 039523 31 EYETSKILREAAMALNSLY--PDGWFALGAAALKARDVEKALDVFTRAVQLDPEN---GEAWNIIACLHMIKNKSKEAFI 105 (244)
Q Consensus 31 ~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~ 105 (244)
.+..+...+...++.++.. ...++.+|.++...|++++|+..|.+++.+.|+. +.++.++|.++...|++++|+.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444555554444444433 4556777777777777777777777777665542 3467777777777777777777
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHhhcCCch
Q 039523 106 AFKEALKLKRNGWQLWENYSHVAL-------DVGNIG-------QALEAVQMVLNITNNKR 152 (244)
Q Consensus 106 ~~~~a~~~~p~~~~~~~~la~~~~-------~~~~~~-------~A~~~~~~al~~~p~~~ 152 (244)
.+++++.++|.....+.++|.++. ..|+++ +|..++++++..+|+..
T Consensus 94 ~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 94 YYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 777777777777777777777766 566655 55566666777777643
No 94
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.45 E-value=5.6e-12 Score=103.05 Aligned_cols=148 Identities=14% Similarity=0.161 Sum_probs=95.8
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc
Q 039523 4 AMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN 83 (244)
Q Consensus 4 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 83 (244)
++.+|++.+|++.++|+..-.+.+...+++.|..++.++....| ...+|+..+.+...+++.++|+++++.+++..|+.
T Consensus 606 il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f 684 (913)
T KOG0495|consen 606 ILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPDF 684 (913)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch
Confidence 44555555555555555555555555555555555555555444 44555556666666667777777777777777777
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523 84 GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR 152 (244)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 152 (244)
+..|..+|+++..+++.+.|.+.|...++.-|+.+..|..++.+-...|+...|...++++.-.+|++.
T Consensus 685 ~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~ 753 (913)
T KOG0495|consen 685 HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA 753 (913)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc
Confidence 777777777777777777777777777777777777777777777777777777777777776676643
No 95
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.45 E-value=1.6e-11 Score=102.00 Aligned_cols=140 Identities=17% Similarity=0.165 Sum_probs=118.3
Q ss_pred ccCCHHHH--HHHHHHHHhcCC---HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHc--------cCHHHHHHHHHHHHh
Q 039523 12 QMISQLEL--RSLARSAYNRGE---YETSKILREAAMALNSLYPDGWFALGAAALKA--------RDVEKALDVFTRAVQ 78 (244)
Q Consensus 12 ~p~~~~~~--~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~a~~ 78 (244)
.|.+..+| +..|..+...++ ..+|+.+|+++++.+|+++.++-.++.++... ++...+.+...+++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 46666555 566777766544 88999999999999999999999888877654 234566666777666
Q ss_pred c--CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523 79 L--DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR 152 (244)
Q Consensus 79 ~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 152 (244)
. +|.++.++..+|......|++++|...+++++.++| +...+..+|.++...|++++|++.|++|++++|..+
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 4 777888999999999999999999999999999999 588999999999999999999999999999999965
No 96
>PRK15331 chaperone protein SicA; Provisional
Probab=99.45 E-value=4.2e-12 Score=87.58 Aligned_cols=122 Identities=14% Similarity=0.067 Sum_probs=102.5
Q ss_pred hCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 039523 45 LNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENY 124 (244)
Q Consensus 45 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 124 (244)
+.++.....+..|.-++..|++++|...|.-....+|.+++.|..+|.|+..+++|++|+..|..+..++++++...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 34445567888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcc
Q 039523 125 SHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLEG 167 (244)
Q Consensus 125 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 167 (244)
|.|+..+|+.+.|+.+|..++. .|.+.........++..+.+
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~ 153 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKT 153 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHc
Confidence 9999999999999999999988 46655444445555554443
No 97
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.44 E-value=1.8e-12 Score=110.04 Aligned_cols=152 Identities=15% Similarity=0.195 Sum_probs=137.8
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+..|-++++++|..+.++..+|..|....+...|..+|+++.++++.+..++-..+..|.+..+++.|...+-.+-+..
T Consensus 477 al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka 556 (1238)
T KOG1127|consen 477 ALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA 556 (1238)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999977777777
Q ss_pred CCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523 81 PEN--GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR 152 (244)
Q Consensus 81 p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 152 (244)
|.. ...|..+|..+...++...|+..|+.+++.+|++..+|..+|.+|...|++..|+..|.++..++|.+.
T Consensus 557 ~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 557 PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 643 356777999999999999999999999999999999999999999999999999999999999999843
No 98
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.43 E-value=5.6e-11 Score=87.57 Aligned_cols=153 Identities=20% Similarity=0.178 Sum_probs=123.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH---HHHH
Q 039523 15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQLDPENG---EAWN 88 (244)
Q Consensus 15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~ 88 (244)
++..++..|..++..|+|.+|+..|++.+...|.+ +.+.+.+|.+++..|++++|+..+++.++..|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 57889999999999999999999999999998876 46889999999999999999999999999998764 5788
Q ss_pred HHHHHHHHcC-----------ChHHHHHHHHHHHhcCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHH
Q 039523 89 IIACLHMIKN-----------KSKEAFIAFKEALKLKRNGWQL-----------------WENYSHVALDVGNIGQALEA 140 (244)
Q Consensus 89 ~l~~~~~~~~-----------~~~~A~~~~~~a~~~~p~~~~~-----------------~~~la~~~~~~~~~~~A~~~ 140 (244)
.+|.++..+. ...+|+..|+..+...|++..+ -+.+|..|.+.|.+..|+..
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 8888865543 3458999999999999987321 34568889999999999999
Q ss_pred HHHHHhhcCCchhhHHHHHHHHHHhcc
Q 039523 141 VQMVLNITNNKRIDTELLERIVLNLEG 167 (244)
Q Consensus 141 ~~~al~~~p~~~~~~~~l~~~~~~~~~ 167 (244)
++.+++..|+.......+..+...+..
T Consensus 164 ~~~v~~~yp~t~~~~~al~~l~~~y~~ 190 (203)
T PF13525_consen 164 FQYVIENYPDTPAAEEALARLAEAYYK 190 (203)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 999999999988777777777665553
No 99
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.43 E-value=9.1e-13 Score=79.78 Aligned_cols=66 Identities=29% Similarity=0.503 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCC
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKAR-DVEKALDVFTRAVQLDP 81 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p 81 (244)
+..|..+|..++..|++++|+..|.++++.+|+++.+++.+|.++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4445555555555555555555555555555555555555555555555 35555555555555444
No 100
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.43 E-value=3.3e-11 Score=84.06 Aligned_cols=126 Identities=18% Similarity=0.120 Sum_probs=107.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 039523 19 LRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQLDPEN---GEAWNIIAC 92 (244)
Q Consensus 19 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~ 92 (244)
.+.........++...+...+++.+...|+. ..+.+.+|.+++..|++++|...|+.++...|+. +.+.+.++.
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 3444445557899999999999999999988 4677889999999999999999999999987655 457888999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523 93 LHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVL 145 (244)
Q Consensus 93 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 145 (244)
++...|++++|+..++. +...+-.+.++...|.++...|++++|+..|++++
T Consensus 94 ~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999999999966 33344557788899999999999999999999874
No 101
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.43 E-value=9.7e-13 Score=79.65 Aligned_cols=66 Identities=33% Similarity=0.591 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCC
Q 039523 50 PDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKN-KSKEAFIAFKEALKLKR 115 (244)
Q Consensus 50 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p 115 (244)
+.+|..+|.+++..|++++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4445555555555555555555555555555555555555555555555 45555555555555544
No 102
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.43 E-value=3.4e-11 Score=96.66 Aligned_cols=147 Identities=12% Similarity=-0.034 Sum_probs=119.7
Q ss_pred hHHHHHHhhcc---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc----CHHHHHHHHHH
Q 039523 3 PAMKKLWKFQM---ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKAR----DVEKALDVFTR 75 (244)
Q Consensus 3 ~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~ 75 (244)
..+.++.+..| +..+.....|..+...|++++|...+++++..+|++..++.. +..+...| ....+.+.+..
T Consensus 27 ~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~ 105 (355)
T cd05804 27 AKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL 105 (355)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc
Confidence 34555555544 345667788899999999999999999999999999877764 44544444 44455555544
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 76 AVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 76 a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
....+|....++..+|.++..+|++++|...++++++..|+++.++..+|.++...|++++|+.++.+++...|.
T Consensus 106 ~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 106 WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 445667777888889999999999999999999999999999999999999999999999999999999998874
No 103
>PRK11906 transcriptional regulator; Provisional
Probab=99.43 E-value=1.4e-11 Score=98.08 Aligned_cols=144 Identities=13% Similarity=0.044 Sum_probs=101.6
Q ss_pred CchHHHHHH---hhccCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHH
Q 039523 1 MMPAMKKLW---KFQMISQLELRSLARSAYNR---------GEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEK 68 (244)
Q Consensus 1 Ai~~~~~al---~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 68 (244)
|+.+|.+++ .++|+.+.++..++.+++.. .+..+|....+++++++|.++.+...+|.+....++++.
T Consensus 277 Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~ 356 (458)
T PRK11906 277 AMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKV 356 (458)
T ss_pred HHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhh
Confidence 456778888 77888888888888777653 234566777777778888888888888887777777888
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHH
Q 039523 69 ALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV-ALDVGNIGQALEAVQMV 144 (244)
Q Consensus 69 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~-~~~~~~~~~A~~~~~~a 144 (244)
|...|++++.++|+.+.+|+..|.++...|+.++|...++++++++|....+-...-.+ .+.....+.|+..|-+-
T Consensus 357 a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (458)
T PRK11906 357 SHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhc
Confidence 88888888888888888888888888888888888888888888877654433322222 23334556666655443
No 104
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.43 E-value=1.2e-10 Score=87.83 Aligned_cols=154 Identities=15% Similarity=0.108 Sum_probs=131.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhH---HHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHHH
Q 039523 14 ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDG---WFALGAAALKARDVEKALDVFTRAVQLDPEN---GEAW 87 (244)
Q Consensus 14 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~ 87 (244)
.++..++..|..++..|++++|+..|++++...|..+.+ .+.+|.++++.+++++|+..+++.++..|++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 367889999999999999999999999999999988755 4899999999999999999999999999876 4578
Q ss_pred HHHHHHHHHcC---------------C---hHHHHHHHHHHHhcCCCCHHH-----------------HHHHHHHHHHcC
Q 039523 88 NIIACLHMIKN---------------K---SKEAFIAFKEALKLKRNGWQL-----------------WENYSHVALDVG 132 (244)
Q Consensus 88 ~~l~~~~~~~~---------------~---~~~A~~~~~~a~~~~p~~~~~-----------------~~~la~~~~~~~ 132 (244)
+.+|.++...+ + ..+|+..|++.++..|++..+ -...|..|.+.|
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~ 189 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG 189 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888764443 1 357889999999999987321 245678899999
Q ss_pred CHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcc
Q 039523 133 NIGQALEAVQMVLNITNNKRIDTELLERIVLNLEG 167 (244)
Q Consensus 133 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 167 (244)
.+..|+.-++.+++..|+.+...+.+..+...+..
T Consensus 190 ~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~ 224 (243)
T PRK10866 190 AYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQ 224 (243)
T ss_pred chHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999988888888888777653
No 105
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.43 E-value=1.6e-11 Score=87.96 Aligned_cols=103 Identities=21% Similarity=0.200 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIAC 92 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 92 (244)
...++.+|.++...|++++|+..|++++...|+. +.++.++|.++...|++++|+..+++++.++|.....+.++|.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 6778999999999999999999999999987753 4589999999999999999999999999999999999999999
Q ss_pred HHH-------HcCChH-------HHHHHHHHHHhcCCCCH
Q 039523 93 LHM-------IKNKSK-------EAFIAFKEALKLKRNGW 118 (244)
Q Consensus 93 ~~~-------~~~~~~-------~A~~~~~~a~~~~p~~~ 118 (244)
++. ..|+++ +|+.++++++..+|.+.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 888 777876 55566666777777653
No 106
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.42 E-value=1.2e-11 Score=94.12 Aligned_cols=165 Identities=15% Similarity=0.124 Sum_probs=117.6
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHH------------HHHHHHHccCHHHH
Q 039523 2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFA------------LGAAALKARDVEKA 69 (244)
Q Consensus 2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------------la~~~~~~g~~~~A 69 (244)
|..++.+-++..++.+.++.++..++..|+.+.++...+++++++|++...+-. -+......++|.++
T Consensus 209 I~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~c 288 (504)
T KOG0624|consen 209 IHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTEC 288 (504)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 344455555555666666666666666666666666666666666665433211 12223445666666
Q ss_pred HHHHHHHHhcCCCcHHH----HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523 70 LDVFTRAVQLDPENGEA----WNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVL 145 (244)
Q Consensus 70 ~~~~~~a~~~~p~~~~~----~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 145 (244)
++..++.++.+|..+.+ .-.+..|+..-|++.+|+..+.+++..+|++..++...+.+|..-..|+.|+.-|+++.
T Consensus 289 le~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 289 LEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred HHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 66666666666664432 33456778888999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchhhHHHHHHHHHHhc
Q 039523 146 NITNNKRIDTELLERIVLNLE 166 (244)
Q Consensus 146 ~~~p~~~~~~~~l~~~~~~~~ 166 (244)
+.++++......+.+..+..+
T Consensus 369 e~n~sn~~~reGle~Akrlkk 389 (504)
T KOG0624|consen 369 ELNESNTRAREGLERAKRLKK 389 (504)
T ss_pred hcCcccHHHHHHHHHHHHHHH
Confidence 999997776666665554433
No 107
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.40 E-value=1.7e-11 Score=100.28 Aligned_cols=148 Identities=15% Similarity=0.143 Sum_probs=126.1
Q ss_pred CchHHHHHHhh--------ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--------CCChhHHHHHHHHHHHcc
Q 039523 1 MMPAMKKLWKF--------QMISQLELRSLARSAYNRGEYETSKILREAAMALN--------SLYPDGWFALGAAALKAR 64 (244)
Q Consensus 1 Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g 64 (244)
|+.+|++|+.+ +|.-+.++.+||..|...|++++|..++++++++. |.-+..+..++.++...+
T Consensus 260 Av~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~ 339 (508)
T KOG1840|consen 260 AVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMN 339 (508)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhc
Confidence 56788888886 45557789999999999999999999999999864 333457889999999999
Q ss_pred CHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CCCHHHHHHHHHHH
Q 039523 65 DVEKALDVFTRAVQLD--------PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK--------RNGWQLWENYSHVA 128 (244)
Q Consensus 65 ~~~~A~~~~~~a~~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~la~~~ 128 (244)
++++|..++.+++++- |..+..+.++|.++..+|++.+|.+.+++++.+. +.....+.++|..|
T Consensus 340 ~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~ 419 (508)
T KOG1840|consen 340 EYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAY 419 (508)
T ss_pred chhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHH
Confidence 9999999999988752 2346789999999999999999999999999874 23356788999999
Q ss_pred HHcCCHHHHHHHHHHHHhhc
Q 039523 129 LDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 129 ~~~~~~~~A~~~~~~al~~~ 148 (244)
...+++.+|...|.+++.+.
T Consensus 420 ~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 420 EELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred HHhcccchHHHHHHHHHHHH
Confidence 99999999999999998764
No 108
>PRK15331 chaperone protein SicA; Provisional
Probab=99.40 E-value=1.4e-11 Score=84.96 Aligned_cols=108 Identities=16% Similarity=0.132 Sum_probs=100.2
Q ss_pred HhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHH
Q 039523 9 WKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWN 88 (244)
Q Consensus 9 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 88 (244)
..+.++.-+..+..|..++..|++++|...|+-+...+|.++..|..||.++...++|++|+..|..+..+++++|...+
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 33456667888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523 89 IIACLHMIKNKSKEAFIAFKEALKLKRNG 117 (244)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 117 (244)
..|.|+..+|+.+.|..+|..++. .|.+
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 999999999999999999999998 3543
No 109
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.40 E-value=2.4e-11 Score=98.76 Aligned_cols=133 Identities=14% Similarity=0.110 Sum_probs=118.8
Q ss_pred ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 039523 12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIA 91 (244)
Q Consensus 12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 91 (244)
.|+++.+...+|..+...|+.++|...++++++..| ++.....++.+ ..++.+++++.+++.++..|+++..+..+|
T Consensus 259 ~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lg 335 (398)
T PRK10747 259 TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLG 335 (398)
T ss_pred HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 567999999999999999999999999999999544 66554444443 459999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523 92 CLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
.++...|++++|.++|+++++..|++. .+..++.++...|+.++|..+|++++.+.
T Consensus 336 rl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 336 QLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999864 46689999999999999999999998764
No 110
>PRK11906 transcriptional regulator; Provisional
Probab=99.39 E-value=4.2e-11 Score=95.35 Aligned_cols=132 Identities=12% Similarity=0.151 Sum_probs=120.2
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHH---hhCCCChhHHHHHHHHHHHc---------cCHHHHHHHHHHHHhcCCCcH
Q 039523 20 RSLARSAYNRG---EYETSKILREAAM---ALNSLYPDGWFALGAAALKA---------RDVEKALDVFTRAVQLDPENG 84 (244)
Q Consensus 20 ~~la~~~~~~~---~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~p~~~ 84 (244)
+..|...+..+ ..+.|...|.+++ ..+|+...++..++.|++.. .+..+|.+..+++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 66777766554 4567888999999 99999999999999998765 346788999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523 85 EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK 151 (244)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 151 (244)
.++..+|.+....++++.|...|++++.++|+.+.+|+..|.++.-.|+.++|..+++++++++|..
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999984
No 111
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.39 E-value=2.6e-11 Score=98.93 Aligned_cols=146 Identities=14% Similarity=0.152 Sum_probs=138.4
Q ss_pred hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 039523 3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPE 82 (244)
Q Consensus 3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 82 (244)
...++.++..|++++.+...|..+...|+-++|..+.+.++..++.+...|..+|.++...++|++|+++|..|++++|+
T Consensus 28 K~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d 107 (700)
T KOG1156|consen 28 KLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD 107 (700)
T ss_pred HHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC
Confidence 45667777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523 83 NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
|...|..++.....+++++-....-.+.++..|.....|..++..+...|++..|....+......
T Consensus 108 N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 108 NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999998887776654
No 112
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.38 E-value=2.6e-11 Score=104.83 Aligned_cols=134 Identities=12% Similarity=0.055 Sum_probs=123.9
Q ss_pred ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH-------
Q 039523 12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENG------- 84 (244)
Q Consensus 12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~------- 84 (244)
+|.+..++..+...+...+++++|+..++.+++..|+...+++.+|.++.+.+++.++... .++...+.+.
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence 7889999999999999999999999999999999999999999999999999988887766 6666555554
Q ss_pred ------------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523 85 ------------EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 85 ------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
.+++.+|.||-++|+.++|...|+++++.+|+++.++.++|..+... +.++|+.++.+|+...
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999 9999999999998764
No 113
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.38 E-value=1.3e-10 Score=92.76 Aligned_cols=121 Identities=19% Similarity=0.241 Sum_probs=110.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCh
Q 039523 21 SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKS 100 (244)
Q Consensus 21 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 100 (244)
.+-..+...++++.|+..+++..+.+|+ +...++.++...++..+|++.+.++++..|.+...+...+..+...+++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 4455666688999999999999998874 5667899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039523 101 KEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMV 144 (244)
Q Consensus 101 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 144 (244)
+.|+...++++...|++...|+.|+.+|...|+++.|+..+..+
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999777644
No 114
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.37 E-value=2.6e-12 Score=80.92 Aligned_cols=80 Identities=21% Similarity=0.358 Sum_probs=45.2
Q ss_pred cCCHHHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 039523 29 RGEYETSKILREAAMALNSL--YPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIA 106 (244)
Q Consensus 29 ~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 106 (244)
+|+++.|+..++++++..|. +...++.+|.++++.|++++|+..+++ .+.+|.++...+.+|.++..+|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45566666666666666553 234455556666666666666666655 555555555555556666666666666665
Q ss_pred HHH
Q 039523 107 FKE 109 (244)
Q Consensus 107 ~~~ 109 (244)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
No 115
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.36 E-value=2.6e-11 Score=100.65 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=102.9
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHHccCHHHHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRG--------EYETSKILREAAMAL--NSLYPDGWFALGAAALKARDVEKAL 70 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~ 70 (244)
|+.+|++|++++|+++.++..++.++.... +...+.....+++.. +|..+.++..+|..+...|++++|.
T Consensus 361 A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~ 440 (517)
T PRK10153 361 ASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAY 440 (517)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHH
Confidence 578999999999999999999988876542 244556666666664 6777888999999999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH
Q 039523 71 DVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQ 119 (244)
Q Consensus 71 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 119 (244)
..+++++.++| +..+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus 441 ~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 441 QAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 99999999999 5889999999999999999999999999999998764
No 116
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=6.4e-11 Score=92.25 Aligned_cols=133 Identities=15% Similarity=0.155 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------------hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523 17 LELRSLARSAYNRGEYETSKILREAAMALNSLY---------------PDGWFALGAAALKARDVEKALDVFTRAVQLDP 81 (244)
Q Consensus 17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 81 (244)
......|+.+++.|+|..|...|++++..-+.. ..++.+++.|+.++++|.+|+..+++++.++|
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 345567899999999999999999988753311 23677899999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhcC
Q 039523 82 ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQA-LEAVQMVLNITN 149 (244)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A-~~~~~~al~~~p 149 (244)
+|..+++..|.++..+|+|+.|+..|++++++.|++-.+...+..+..+..++.+. ...|.+.+...+
T Consensus 289 ~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 289 NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999988888888887776665554 667777766543
No 117
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.35 E-value=1.6e-11 Score=101.90 Aligned_cols=116 Identities=23% Similarity=0.196 Sum_probs=110.7
Q ss_pred hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHH--HHHHHHhcC
Q 039523 3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALD--VFTRAVQLD 80 (244)
Q Consensus 3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~a~~~~ 80 (244)
.++.++-.++|..+..|+..|..+...|++.+|...|..++.++|+++.....+|.++.+.|+..-|.. .+..+++++
T Consensus 671 ~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 671 SCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred HHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 467788888999999999999999999999999999999999999999999999999999999888888 999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGW 118 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 118 (244)
|.++.+|+.+|.++...|+.++|.++|..++++.+.+|
T Consensus 751 p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 751 PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 99999999999999999999999999999999988765
No 118
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.34 E-value=6.9e-12 Score=74.90 Aligned_cols=62 Identities=27% Similarity=0.527 Sum_probs=33.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523 56 LGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG 117 (244)
Q Consensus 56 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 117 (244)
+|..++..|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 45555555555555555555555555555555555555555555555555555555555544
No 119
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.34 E-value=5.8e-12 Score=79.29 Aligned_cols=81 Identities=21% Similarity=0.302 Sum_probs=73.1
Q ss_pred ccCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 039523 63 ARDVEKALDVFTRAVQLDPE--NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEA 140 (244)
Q Consensus 63 ~g~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 140 (244)
.|+++.|+..++++++.+|. +...++.+|.+++..|++++|+..+++ ...+|.+....+.+|.++..+|++++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68999999999999999995 567788899999999999999999999 888888889999999999999999999999
Q ss_pred HHHH
Q 039523 141 VQMV 144 (244)
Q Consensus 141 ~~~a 144 (244)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 120
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.34 E-value=1.1e-11 Score=74.06 Aligned_cols=64 Identities=31% Similarity=0.630 Sum_probs=38.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH
Q 039523 21 SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENG 84 (244)
Q Consensus 21 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 84 (244)
.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4556666666666666666666666666666666666666666666666666666666666553
No 121
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.33 E-value=1.7e-10 Score=87.74 Aligned_cols=102 Identities=17% Similarity=0.125 Sum_probs=52.8
Q ss_pred hHHHHHHHHH-HHccCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHH
Q 039523 51 DGWFALGAAA-LKARDVEKALDVFTRAVQLDPEN---GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG---WQLWEN 123 (244)
Q Consensus 51 ~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~ 123 (244)
..++..|..+ +..|+|++|+..|++.++..|++ +.+++.+|.+++..|++++|+..|++++...|++ +.+++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444444443 33455555555555555555544 3455555555555555555555555555554442 444555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523 124 YSHVALDVGNIGQALEAVQMVLNITNNKR 152 (244)
Q Consensus 124 la~~~~~~~~~~~A~~~~~~al~~~p~~~ 152 (244)
+|.++...|++++|...|+++++..|+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 55555555555555555555555555543
No 122
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=9.9e-11 Score=91.20 Aligned_cols=154 Identities=17% Similarity=0.246 Sum_probs=124.3
Q ss_pred HHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhH---------------------------------
Q 039523 6 KKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDG--------------------------------- 52 (244)
Q Consensus 6 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~--------------------------------- 52 (244)
-.-...-|++...+..+|.+++..|++++|+..|+++...+|.+...
T Consensus 222 le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~ 301 (564)
T KOG1174|consen 222 LHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTAS 301 (564)
T ss_pred HHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchh
Confidence 33445568888899999999999999999999999998888875443
Q ss_pred -HHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 039523 53 -WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV 131 (244)
Q Consensus 53 -~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 131 (244)
|+.-+...+..+++..|+.+-+++++.+|++..+++..|.++...|+.++|+-.|+.+..+.|....+|..+..+|...
T Consensus 302 ~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 302 HWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhh
Confidence 3344445556677888888888888888988888888899999999999999999999999888888888888889888
Q ss_pred CCHHHHHHHHHHHHhhcCCchhhHHHHH
Q 039523 132 GNIGQALEAVQMVLNITNNKRIDTELLE 159 (244)
Q Consensus 132 ~~~~~A~~~~~~al~~~p~~~~~~~~l~ 159 (244)
|++.+|...-..+++..|.+...+..++
T Consensus 382 ~~~kEA~~~An~~~~~~~~sA~~LtL~g 409 (564)
T KOG1174|consen 382 KRFKEANALANWTIRLFQNSARSLTLFG 409 (564)
T ss_pred chHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence 8888888888888888877665555543
No 123
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.32 E-value=1.8e-10 Score=87.54 Aligned_cols=105 Identities=11% Similarity=0.069 Sum_probs=95.7
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---cHHHHH
Q 039523 16 QLELRSLARSA-YNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQLDPE---NGEAWN 88 (244)
Q Consensus 16 ~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~ 88 (244)
....+..|..+ +..|+|++|+..|+..++..|++ +.+++.+|.+++..|++++|+..|.++++..|+ .+++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46778888876 66799999999999999999988 479999999999999999999999999988876 578999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH
Q 039523 89 IIACLHMIKNKSKEAFIAFKEALKLKRNGWQL 120 (244)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 120 (244)
.+|.++..+|++++|...|+++++..|++..+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 99999999999999999999999999998654
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.30 E-value=1.9e-10 Score=99.59 Aligned_cols=152 Identities=16% Similarity=0.097 Sum_probs=124.7
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh-------------------hHHHHHHHHHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYP-------------------DGWFALGAAAL 61 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------------------~~~~~la~~~~ 61 (244)
|++..+.+++.+|+....++.+|.++++.+++..+... .++...+.+. .+++.+|.||.
T Consensus 50 ai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Yd 127 (906)
T PRK14720 50 AKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYA 127 (906)
T ss_pred HHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 35667788888999999999999999999988877665 5555555444 89999999999
Q ss_pred HccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------------------CCCCHHH-
Q 039523 62 KARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL--------------------KRNGWQL- 120 (244)
Q Consensus 62 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------------------~p~~~~~- 120 (244)
++|+.++|...|+++++.+|+++.+..++|..+... +.++|+.++.+|+.. +|.+...
T Consensus 128 k~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f 206 (906)
T PRK14720 128 KLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFF 206 (906)
T ss_pred HcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHH
Confidence 999999999999999999999999999999999988 999999998888765 2333222
Q ss_pred -------------------HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhH
Q 039523 121 -------------------WENYSHVALDVGNIGQALEAVQMVLNITNNKRIDT 155 (244)
Q Consensus 121 -------------------~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 155 (244)
+.-+-.+|...++|++++..++.+++++|++....
T Consensus 207 ~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~ 260 (906)
T PRK14720 207 LRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAR 260 (906)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhH
Confidence 22223667788899999999999999999855443
No 125
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.30 E-value=1.3e-10 Score=81.11 Aligned_cols=108 Identities=24% Similarity=0.276 Sum_probs=93.2
Q ss_pred hHHHHHHhhccCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHH
Q 039523 3 PAMKKLWKFQMIS---QLELRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRA 76 (244)
Q Consensus 3 ~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a 76 (244)
..+++.++.+|++ ..+.+.+|.+++..|++++|+..|+.++...|+. +.+...+|.+++..|++++|+..++.
T Consensus 32 ~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~- 110 (145)
T PF09976_consen 32 AAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ- 110 (145)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-
Confidence 3467777778888 5678889999999999999999999999988655 35788999999999999999999976
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 039523 77 VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEAL 111 (244)
Q Consensus 77 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 111 (244)
+...+-.+.++..+|.++...|++++|+..|++++
T Consensus 111 ~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 111 IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 44455567788899999999999999999999874
No 126
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.29 E-value=3.2e-11 Score=102.71 Aligned_cols=150 Identities=15% Similarity=0.171 Sum_probs=138.5
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--hhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLY--PDGWFALGAAALKARDVEKALDVFTRAVQ 78 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 78 (244)
|-.+|++|.++||.++.++...+..|....+++.|.....++-+..|.. ...|..+|..|...++..+|+..++.+++
T Consensus 511 A~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR 590 (1238)
T KOG1127|consen 511 AKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALR 590 (1238)
T ss_pred HHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhc
Confidence 4579999999999999999999999999999999999987777777644 34677799999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 79 LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 79 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
.+|.+...|..+|.+|...|++..|++.|.++..++|.+....+..+.+....|.|.+|+..+...+.....
T Consensus 591 ~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~ 662 (1238)
T KOG1127|consen 591 TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSL 662 (1238)
T ss_pred CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988876544
No 127
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.29 E-value=3.6e-10 Score=87.43 Aligned_cols=153 Identities=14% Similarity=0.020 Sum_probs=111.7
Q ss_pred HHHHHHhh--ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc--CHHHHHHHHHHHHhc
Q 039523 4 AMKKLWKF--QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKAR--DVEKALDVFTRAVQL 79 (244)
Q Consensus 4 ~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~ 79 (244)
.++.|++. .-++.+.......++...++++.|.+.++.+.+.+.+..-+...-+.+.+..| ++.+|...|+.....
T Consensus 117 ~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~ 196 (290)
T PF04733_consen 117 DYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK 196 (290)
T ss_dssp HHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC
T ss_pred CHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence 35566665 22467777777788888888888888888888777766555555555555555 588888888888777
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhcCCchhhHH
Q 039523 80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNI-GQALEAVQMVLNITNNKRIDTE 156 (244)
Q Consensus 80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~ 156 (244)
.+.++..+..++.++..+|+|++|...+.+++..+|+++.++.+++.+....|+. +.+.+++.+....+|++++...
T Consensus 197 ~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 197 FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKD 274 (290)
T ss_dssp S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence 7788888888888888888888888888888888888888888888888888887 5566777777777888765433
No 128
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.27 E-value=2.1e-09 Score=81.22 Aligned_cols=143 Identities=11% Similarity=0.046 Sum_probs=119.9
Q ss_pred CchHHHHHHhhccCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---hHHHHHHHHHHHcc----------
Q 039523 1 MMPAMKKLWKFQMISQLEL---RSLARSAYNRGEYETSKILREAAMALNSLYP---DGWFALGAAALKAR---------- 64 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~---~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g---------- 64 (244)
|+..|++++...|..+.+. +.+|.+++..+++++|+..+++.++..|+++ .+++.+|.++...+
T Consensus 51 Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~ 130 (243)
T PRK10866 51 AITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGV 130 (243)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCC
Confidence 5788999999999886654 8999999999999999999999999998875 57888888764443
Q ss_pred -----C---HHHHHHHHHHHHhcCCCcHH-----------------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--
Q 039523 65 -----D---VEKALDVFTRAVQLDPENGE-----------------AWNIIACLHMIKNKSKEAFIAFKEALKLKRNG-- 117 (244)
Q Consensus 65 -----~---~~~A~~~~~~a~~~~p~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-- 117 (244)
+ ..+|+..+++.++..|++.. --+..|..|.+.|.|..|+.-++.+++..|+.
T Consensus 131 ~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~ 210 (243)
T PRK10866 131 DRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQA 210 (243)
T ss_pred CccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCch
Confidence 1 35788999999999998742 12456778999999999999999999998875
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039523 118 -WQLWENYSHVALDVGNIGQALEAVQM 143 (244)
Q Consensus 118 -~~~~~~la~~~~~~~~~~~A~~~~~~ 143 (244)
.+++..++..+..+|..++|......
T Consensus 211 ~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 211 TRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 67788999999999999999876644
No 129
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.26 E-value=2.2e-09 Score=88.98 Aligned_cols=155 Identities=17% Similarity=0.095 Sum_probs=121.9
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc-----CHHHHHHHHHHH
Q 039523 2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKAR-----DVEKALDVFTRA 76 (244)
Q Consensus 2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~a 76 (244)
++++++.-..-++...++-..|.++...|++++|...|+..+..+|++...+..+..+..-.. +.+.-...|+..
T Consensus 24 L~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l 103 (517)
T PF12569_consen 24 LEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDEL 103 (517)
T ss_pred HHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHH
Confidence 444444444456777888899999999999999999999999999999988888877762222 334444444432
Q ss_pred HhcCC---------------------------------------------------------------------------
Q 039523 77 VQLDP--------------------------------------------------------------------------- 81 (244)
Q Consensus 77 ~~~~p--------------------------------------------------------------------------- 81 (244)
....|
T Consensus 104 ~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~ 183 (517)
T PF12569_consen 104 AEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGD 183 (517)
T ss_pred HHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCcc
Confidence 22110
Q ss_pred ----Cc----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchh
Q 039523 82 ----EN----GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRI 153 (244)
Q Consensus 82 ----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 153 (244)
.. ..+++.++..+...|++++|+.+++++|...|..++.+...|.++...|++.+|...++.+..+++.+..
T Consensus 184 ~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy 263 (517)
T PF12569_consen 184 DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY 263 (517)
T ss_pred ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH
Confidence 01 1356788999999999999999999999999999999999999999999999999999999999988654
Q ss_pred hHH
Q 039523 154 DTE 156 (244)
Q Consensus 154 ~~~ 156 (244)
.-.
T Consensus 264 iNs 266 (517)
T PF12569_consen 264 INS 266 (517)
T ss_pred HHH
Confidence 433
No 130
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.24 E-value=6.1e-10 Score=74.11 Aligned_cols=96 Identities=22% Similarity=0.148 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---cHHHHHHH
Q 039523 17 LELRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQLDPE---NGEAWNII 90 (244)
Q Consensus 17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~~l 90 (244)
.+++.+|.++-..|+.++|+..|++++...... ..++..+|..+...|++++|+..+++.+...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 456777777777788888888888777764433 356777777777777777777777777777676 66666777
Q ss_pred HHHHHHcCChHHHHHHHHHHHh
Q 039523 91 ACLHMIKNKSKEAFIAFKEALK 112 (244)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~a~~ 112 (244)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777766553
No 131
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.3e-10 Score=89.19 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=101.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCC----c-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523 53 WFALGAAALKARDVEKALDVFTRAVQLDPE----N-----------GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG 117 (244)
Q Consensus 53 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~----~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 117 (244)
....|..+++.|+|..|...|++++..-.. + ..++.+++.|+.++++|.+|+..+.+++.++|++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 346788999999999999999998875331 1 2478999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcc
Q 039523 118 WQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLEG 167 (244)
Q Consensus 118 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 167 (244)
..+++..|.++..+|+++.|+..|++++++.|++......+..+...+.+
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987777777776666553
No 132
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.23 E-value=3.4e-10 Score=81.36 Aligned_cols=98 Identities=12% Similarity=0.122 Sum_probs=85.2
Q ss_pred CChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 039523 48 LYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN---GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENY 124 (244)
Q Consensus 48 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 124 (244)
....+++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+.+++...|++...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 456678999999999999999999999999887653 46899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 039523 125 SHVALDVGNIGQALEAVQMVL 145 (244)
Q Consensus 125 a~~~~~~~~~~~A~~~~~~al 145 (244)
|.++...|+...+...+..++
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~ 133 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAE 133 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHH
Confidence 999998877655554444444
No 133
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.19 E-value=2.2e-10 Score=94.83 Aligned_cols=134 Identities=15% Similarity=0.238 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHH----------------------------HHHHHHHHHccCHH
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGW----------------------------FALGAAALKARDVE 67 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~----------------------------~~la~~~~~~g~~~ 67 (244)
...|-....+|...|+..+|.....+-++.+ .++..| ..+|......++|.
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~lek~-~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs 502 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELEKD-PDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFS 502 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhcCC-CcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHH
Confidence 4555566666666666666666666666632 233333 33444445568999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 68 KALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 68 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
++.++++..++++|-....|+.+|.+..+.+++..|.++|..++.++|++...|.+++..|...|+..+|...+.++++.
T Consensus 503 ~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 503 EADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred HHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 039523 148 TNN 150 (244)
Q Consensus 148 ~p~ 150 (244)
+-+
T Consensus 583 n~~ 585 (777)
T KOG1128|consen 583 NYQ 585 (777)
T ss_pred CCC
Confidence 855
No 134
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=5e-10 Score=87.24 Aligned_cols=136 Identities=18% Similarity=0.274 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH-----------
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENG----------- 84 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~----------- 84 (244)
..+-...+.++...|+++.|...--..+++++.+..+++..|.++...++.+.|+..|++++.++|+..
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~ 248 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKK 248 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHH
Confidence 345567788999999999999999999999999999999999999999999999999999999999764
Q ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523 85 -EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG----WQLWENYSHVALDVGNIGQALEAVQMVLNITNNK 151 (244)
Q Consensus 85 -~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 151 (244)
..|-.-|.-.++.|++..|.++|..++.++|++ ..+|.+.+.+...+|+..+|+.....++.++|..
T Consensus 249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy 320 (486)
T KOG0550|consen 249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY 320 (486)
T ss_pred HHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence 356677888999999999999999999999976 5678999999999999999999999999999883
No 135
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.17 E-value=1.6e-10 Score=69.56 Aligned_cols=65 Identities=26% Similarity=0.427 Sum_probs=38.7
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 039523 27 YNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIA 91 (244)
Q Consensus 27 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 91 (244)
+..|++++|+..|++++..+|++..++..+|.++++.|++++|...+++++..+|+++.++..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 34556666666666666666666666666666666666666666666666666666555554444
No 136
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.17 E-value=1.2e-09 Score=89.56 Aligned_cols=139 Identities=17% Similarity=0.227 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039523 17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI 96 (244)
Q Consensus 17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 96 (244)
..++..+.-.+..++|.+.+...+..++..|+++..+-..|..+...|+-++|..+...++..++.+..+|.-+|.++..
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 45666677778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhH
Q 039523 97 KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDT 155 (244)
Q Consensus 97 ~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 155 (244)
.++|++|+++|+.|+...|++..+|..++.+-.++|+++.......+.++..|.....+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w 146 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASW 146 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999854433
No 137
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.17 E-value=5.3e-09 Score=77.12 Aligned_cols=138 Identities=20% Similarity=0.175 Sum_probs=110.3
Q ss_pred CchHHHHHHhhccCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---hHHHHHHHHHHHcc----------
Q 039523 1 MMPAMKKLWKFQMIS---QLELRSLARSAYNRGEYETSKILREAAMALNSLYP---DGWFALGAAALKAR---------- 64 (244)
Q Consensus 1 Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g---------- 64 (244)
|+..|++++...|.+ +.+.+.+|.+++..|+++.|+..+++.++..|+++ .+++.+|.+++...
T Consensus 24 Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~ 103 (203)
T PF13525_consen 24 AIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQ 103 (203)
T ss_dssp HHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccCh
Confidence 567888888887764 68899999999999999999999999999999875 47888888876543
Q ss_pred -CHHHHHHHHHHHHhcCCCcHH-----------------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH---HHHHH
Q 039523 65 -DVEKALDVFTRAVQLDPENGE-----------------AWNIIACLHMIKNKSKEAFIAFKEALKLKRNGW---QLWEN 123 (244)
Q Consensus 65 -~~~~A~~~~~~a~~~~p~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~ 123 (244)
...+|+..|+..+...|++.. --+.+|..|.+.|.+..|+..++.+++..|+.. .++..
T Consensus 104 ~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~ 183 (203)
T PF13525_consen 104 TSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALAR 183 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 345899999999999998752 234578889999999999999999999999874 56888
Q ss_pred HHHHHHHcCCHHHHH
Q 039523 124 YSHVALDVGNIGQAL 138 (244)
Q Consensus 124 la~~~~~~~~~~~A~ 138 (244)
++.++..+|..+.|.
T Consensus 184 l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 184 LAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHTT-HHHHH
T ss_pred HHHHHHHhCChHHHH
Confidence 899999999988543
No 138
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=1.8e-09 Score=82.92 Aligned_cols=142 Identities=14% Similarity=0.092 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc--------------CC-
Q 039523 17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL--------------DP- 81 (244)
Q Consensus 17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------------~p- 81 (244)
.....+|.+++..|+|++|...|+-+...+.-+...+.++|.+++-.|.|.+|.....++-+. +.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence 556778999999999999999999999887778889999999999999999999887765321 11
Q ss_pred -----------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 82 -----------ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 82 -----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
+..+-...++.+.+..-+|.+|++.|.+.+.-+|+....-.+++.||.++.-++-+.+.+.-.++..|+
T Consensus 138 k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd 217 (557)
T KOG3785|consen 138 KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD 217 (557)
T ss_pred HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC
Confidence 112234567777888889999999999999999999888899999999999999999999999999999
Q ss_pred chhhHHHH
Q 039523 151 KRIDTELL 158 (244)
Q Consensus 151 ~~~~~~~l 158 (244)
.+++....
T Consensus 218 StiA~NLk 225 (557)
T KOG3785|consen 218 STIAKNLK 225 (557)
T ss_pred cHHHHHHH
Confidence 77655443
No 139
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=8.7e-10 Score=82.77 Aligned_cols=147 Identities=16% Similarity=0.090 Sum_probs=125.9
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHh--
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ-- 78 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-- 78 (244)
||+++.--.+.+|.+...+..+|.+|+...+|..|..+|++.-...|.........+..+.+.+.+..|+........
T Consensus 29 aI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~ 108 (459)
T KOG4340|consen 29 AIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNP 108 (459)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCH
Confidence 355556666668989999999999999999999999999999999999888888889999999988888876653322
Q ss_pred --------------c--------------CC--CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 039523 79 --------------L--------------DP--ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVA 128 (244)
Q Consensus 79 --------------~--------------~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 128 (244)
. -| +++++.++.|.+.++.|+++.|++-|+.+++...-.+.+-++++.++
T Consensus 109 ~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH 188 (459)
T KOG4340|consen 109 ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH 188 (459)
T ss_pred HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH
Confidence 1 13 45678889999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhh
Q 039523 129 LDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 129 ~~~~~~~~A~~~~~~al~~ 147 (244)
...|++..|+.+..+.++.
T Consensus 189 y~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 189 YSSRQYASALKHISEIIER 207 (459)
T ss_pred HhhhhHHHHHHHHHHHHHh
Confidence 9999999999887777654
No 140
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.14 E-value=2e-10 Score=69.16 Aligned_cols=66 Identities=23% Similarity=0.287 Sum_probs=46.5
Q ss_pred HHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 039523 61 LKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSH 126 (244)
Q Consensus 61 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~ 126 (244)
+..|++++|++.|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456777777777777777777777777777777777777777777777777777776666555543
No 141
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.13 E-value=6.1e-10 Score=68.05 Aligned_cols=66 Identities=23% Similarity=0.392 Sum_probs=39.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHH
Q 039523 23 ARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWN 88 (244)
Q Consensus 23 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 88 (244)
..+++..+++++|+.++++++..+|+++..+..+|.++...|++++|.+.++++++.+|+++.+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 345556666666666666666666666666666666666666666666666666666665555443
No 142
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.13 E-value=4.6e-10 Score=85.76 Aligned_cols=108 Identities=18% Similarity=0.156 Sum_probs=95.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 039523 19 LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKN 98 (244)
Q Consensus 19 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 98 (244)
+-..|+.|+.+|+|++|+++|.+++..+|.++..+.+.|.+|++.+.|..|...+..++.++.....+|...+.+...+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 039523 99 KSKEAFIAFKEALKLKRNGWQLWENYSH 126 (244)
Q Consensus 99 ~~~~A~~~~~~a~~~~p~~~~~~~~la~ 126 (244)
...+|.+.++.++++.|++.+..-.++.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~ 207 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLAR 207 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHH
Confidence 9999999999999999987665544443
No 143
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.13 E-value=4.9e-09 Score=69.78 Aligned_cols=97 Identities=21% Similarity=0.163 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---CHHHHHH
Q 039523 50 PDGWFALGAAALKARDVEKALDVFTRAVQLDPEN---GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN---GWQLWEN 123 (244)
Q Consensus 50 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~ 123 (244)
+.+++.+|.++...|+.++|+..|++++...... ..+++.+|..+...|++++|+..+++++...|+ +..+...
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 3578899999999999999999999999976544 568999999999999999999999999999888 7788888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 039523 124 YSHVALDVGNIGQALEAVQMVLN 146 (244)
Q Consensus 124 la~~~~~~~~~~~A~~~~~~al~ 146 (244)
++.++...|+.++|+..+-.++.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999888775
No 144
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.12 E-value=5.4e-09 Score=77.97 Aligned_cols=103 Identities=19% Similarity=0.213 Sum_probs=80.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 039523 19 LRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQLDPEN---GEAWNIIAC 92 (244)
Q Consensus 19 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~ 92 (244)
.+..|..++..|+|..|...|...++..|++ +.++++||.+++..|++++|...|..+.+..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6777888888888888888888888887765 4577888888888888888888888887776644 577888888
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCHHHH
Q 039523 93 LHMIKNKSKEAFIAFKEALKLKRNGWQLW 121 (244)
Q Consensus 93 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 121 (244)
+...+|+.++|...|+++++..|+...+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 88888888888888888888888765543
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.12 E-value=2.1e-09 Score=85.89 Aligned_cols=109 Identities=20% Similarity=0.143 Sum_probs=98.5
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+.+|++..+.+|+ +...++.++...++..+|+..+.+++...|.+...+...+..++..++++.|+++.++++...
T Consensus 188 ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls 264 (395)
T PF09295_consen 188 AIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELS 264 (395)
T ss_pred HHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 45677777766654 677799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALK 112 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 112 (244)
|++...|+.++.+|...|++++|+..+..+-.
T Consensus 265 P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 265 PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999999999999999987765433
No 146
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.10 E-value=9e-10 Score=67.29 Aligned_cols=68 Identities=28% Similarity=0.347 Sum_probs=44.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 039523 57 GAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENY 124 (244)
Q Consensus 57 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 124 (244)
..++.+.+++++|++++++++..+|+++..|...|.++...|++++|...++++++..|+++.+....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 34566666666666666666666666666666666666666666666666666666666665554433
No 147
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=3.7e-09 Score=74.90 Aligned_cols=99 Identities=20% Similarity=0.227 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh-----HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 039523 20 RSLARSAYNRGEYETSKILREAAMALNSLYPD-----GWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLH 94 (244)
Q Consensus 20 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 94 (244)
-.=|+-++..|+|++|...|..++...|..+. .+.+.|.+.++++.++.|+..+.+++.++|.+..++...+.+|
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAY 178 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHH
Confidence 33455555555555555555555555554321 3445555555555555555555555555555555555555555
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCH
Q 039523 95 MIKNKSKEAFIAFKEALKLKRNGW 118 (244)
Q Consensus 95 ~~~~~~~~A~~~~~~a~~~~p~~~ 118 (244)
.++.++++|+.-|.+.+..+|...
T Consensus 179 ek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcchH
Confidence 555555555555555555555443
No 148
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.07 E-value=1.1e-08 Score=69.37 Aligned_cols=85 Identities=24% Similarity=0.250 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH---HHHH
Q 039523 15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQLDPENG---EAWN 88 (244)
Q Consensus 15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~ 88 (244)
.+..++.-|...+..|+|++|++.|+......|.. ..+...+|.+++..|++++|+..+++-++++|+++ .+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 46677888888888888888888888888877654 35677888888888888888888888888887664 4667
Q ss_pred HHHHHHHHcCC
Q 039523 89 IIACLHMIKNK 99 (244)
Q Consensus 89 ~l~~~~~~~~~ 99 (244)
..|.+++.+..
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 77777766554
No 149
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=3.9e-09 Score=74.79 Aligned_cols=111 Identities=18% Similarity=0.154 Sum_probs=96.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 039523 53 WFALGAAALKARDVEKALDVFTRAVQLDPENG-----EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV 127 (244)
Q Consensus 53 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 127 (244)
+-.=|.-++..|+|.+|..-|..++...|..+ -.+.+.|.+..+++.++.|+..+.++++++|.+..++...|.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 34457788999999999999999999999654 4678899999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 039523 128 ALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVL 163 (244)
Q Consensus 128 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 163 (244)
|.+...+++|+..|++.++.+|........+.++-.
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~ 213 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREAIARLPP 213 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCH
Confidence 999999999999999999999996554444444433
No 150
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.05 E-value=2.3e-08 Score=82.96 Aligned_cols=134 Identities=17% Similarity=0.124 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039523 17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI 96 (244)
Q Consensus 17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 96 (244)
.+++.+|..|-..|++++|+.+.+++|...|..+..++..|.++-+.|++.+|.+.++.+-.+++.+-..-...+..+.+
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 35588899999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred cCChHHHHHHHHHHHhcCCC--C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 97 KNKSKEAFIAFKEALKLKRN--G-------WQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 97 ~~~~~~A~~~~~~a~~~~p~--~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
.|+.++|.+.+..-.+.+.+ . .......|.+|...|++..|+..|..+.++..+
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDD 337 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999998766554421 1 223345699999999999999999988876543
No 151
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.04 E-value=4.3e-09 Score=81.48 Aligned_cols=139 Identities=17% Similarity=0.107 Sum_probs=112.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 039523 15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLH 94 (244)
Q Consensus 15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 94 (244)
++......|.++...|++++|+..+.+. .+.........+++..++++.|.+.++.+.+.+.+..-+....+++.
T Consensus 101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~ 175 (290)
T PF04733_consen 101 NEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVN 175 (290)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 3455667778888899999999888764 56777778889999999999999999999999887776666666676
Q ss_pred HHcC--ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHH
Q 039523 95 MIKN--KSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELL 158 (244)
Q Consensus 95 ~~~~--~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 158 (244)
...| .+.+|...|++.....+.++..+..++.++..+|++++|...+.+++..+|+++..+..+
T Consensus 176 l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNl 241 (290)
T PF04733_consen 176 LATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANL 241 (290)
T ss_dssp HHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 6666 599999999999888888999999999999999999999999999999999866544443
No 152
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.04 E-value=1.2e-08 Score=79.21 Aligned_cols=167 Identities=16% Similarity=0.077 Sum_probs=116.3
Q ss_pred chHHHHHHhhc-----c-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--C----hhHHHHHHHHHHHc-cCHHH
Q 039523 2 MPAMKKLWKFQ-----M-ISQLELRSLARSAYNRGEYETSKILREAAMALNSL--Y----PDGWFALGAAALKA-RDVEK 68 (244)
Q Consensus 2 i~~~~~al~~~-----p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~-g~~~~ 68 (244)
..+|.++.... + .....+...+.++... ++++|+.++++++...-. . ..++..+|.+|... |++++
T Consensus 55 ~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~ 133 (282)
T PF14938_consen 55 AEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEK 133 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45566665542 1 1244556666666555 899999999999886421 1 34678889999888 99999
Q ss_pred HHHHHHHHHhcCC--Cc----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHH
Q 039523 69 ALDVFTRAVQLDP--EN----GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG-------WQLWENYSHVALDVGNIG 135 (244)
Q Consensus 69 A~~~~~~a~~~~p--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~la~~~~~~~~~~ 135 (244)
|+++|++++.... +. ..++..+|.++...|+|++|++.|++.....-++ ...+...+.|+...||..
T Consensus 134 Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v 213 (282)
T PF14938_consen 134 AIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYV 213 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHH
Confidence 9999999987632 11 3467788999999999999999999887653211 234566788889999999
Q ss_pred HHHHHHHHHHhhcCC--chhhHHHHHHHHHHhcccc
Q 039523 136 QALEAVQMVLNITNN--KRIDTELLERIVLNLEGRT 169 (244)
Q Consensus 136 ~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~ 169 (244)
.|...+++....+|. .+.....+..++..+++..
T Consensus 214 ~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D 249 (282)
T PF14938_consen 214 AARKALERYCSQDPSFASSREYKFLEDLLEAYEEGD 249 (282)
T ss_dssp HHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCC
Confidence 999999999988886 3445667777777777543
No 153
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.02 E-value=1.5e-09 Score=83.02 Aligned_cols=114 Identities=18% Similarity=0.114 Sum_probs=102.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 039523 53 WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG 132 (244)
Q Consensus 53 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~ 132 (244)
.-..|.-|+++|.|++|+.||.+++..+|.++..+.+.+.+|++.+++..|...+..++.++.....+|...+.+...+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523 133 NIGQALEAVQMVLNITNNKRIDTELLERIVLNLE 166 (244)
Q Consensus 133 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 166 (244)
+.++|...++.++++.|+.......+..+..-.+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E 213 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINSLRE 213 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHh
Confidence 9999999999999999996554444554444333
No 154
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.02 E-value=1.9e-08 Score=72.33 Aligned_cols=154 Identities=13% Similarity=-0.022 Sum_probs=125.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 039523 14 ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACL 93 (244)
Q Consensus 14 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 93 (244)
..+..++..|..|-..|-+.-|+.-|.+++.+.|+-+.++..+|..+...|+|+.|.+.|+..++++|....+..+.|..
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~ 142 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccc
Q 039523 94 HMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLEGR 168 (244)
Q Consensus 94 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 168 (244)
++..|++.-|.+-+.+-.+.+|+++.--..+-....+ -+..+|..-+.+--+...+..+.+..++...+.+...
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k-~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e 216 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQK-LDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE 216 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhh-CCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH
Confidence 9999999999999999999999987543333333222 3566666554443333344566777777777776643
No 155
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.01 E-value=2.5e-07 Score=68.59 Aligned_cols=153 Identities=21% Similarity=0.209 Sum_probs=127.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHH---HHH
Q 039523 15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYP---DGWFALGAAALKARDVEKALDVFTRAVQLDPENGE---AWN 88 (244)
Q Consensus 15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~---~~~ 88 (244)
.+..|+.-|...++.|++++|+..|+......|..+ .+...++.++++.+++++|+...++-++..|++++ +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 578899999999999999999999999999887654 68889999999999999999999999999987754 567
Q ss_pred HHHHHHHHc--------CChHHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHH
Q 039523 89 IIACLHMIK--------NKSKEAFIAFKEALKLKRNGWQ-----------------LWENYSHVALDVGNIGQALEAVQM 143 (244)
Q Consensus 89 ~l~~~~~~~--------~~~~~A~~~~~~a~~~~p~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~ 143 (244)
..|.++... .-..+|+..|++.+...|++.. --..+|..|.+.|.+..|+..++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 777776532 2236888899999999998631 124568889999999999999999
Q ss_pred HHhhcCCchhhHHHHHHHHHHhcc
Q 039523 144 VLNITNNKRIDTELLERIVLNLEG 167 (244)
Q Consensus 144 al~~~p~~~~~~~~l~~~~~~~~~ 167 (244)
+++..|+.+.....+..+...+..
T Consensus 193 v~e~y~~t~~~~eaL~~l~eaY~~ 216 (254)
T COG4105 193 VLENYPDTSAVREALARLEEAYYA 216 (254)
T ss_pred HHhccccccchHHHHHHHHHHHHH
Confidence 999999877777777777776664
No 156
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.01 E-value=3.5e-08 Score=66.86 Aligned_cols=108 Identities=14% Similarity=0.107 Sum_probs=94.9
Q ss_pred ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHH
Q 039523 49 YPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN---GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG---WQLWE 122 (244)
Q Consensus 49 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~ 122 (244)
.+..++.-|...++.|+|++|++.++.+....|.. ..+.+.+|.++++.|++++|+..+++-++++|++ ..+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 45678899999999999999999999999988754 5788999999999999999999999999999977 46788
Q ss_pred HHHHHHHHcCC---------------HHHHHHHHHHHHhhcCCchhhHH
Q 039523 123 NYSHVALDVGN---------------IGQALEAVQMVLNITNNKRIDTE 156 (244)
Q Consensus 123 ~la~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~~~ 156 (244)
..|.++..+.. ...|...|++.++..|++.....
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 88988888776 78899999999999999766544
No 157
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.99 E-value=1.6e-08 Score=80.90 Aligned_cols=68 Identities=16% Similarity=0.212 Sum_probs=34.5
Q ss_pred ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhH---HHHHHHHHHHccCHHHHHHHHHHHHhc
Q 039523 12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDG---WFALGAAALKARDVEKALDVFTRAVQL 79 (244)
Q Consensus 12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~a~~~ 79 (244)
+|+++.+++++|..++..|++++|+..|+++++++|++..+ |+++|.+|..+|++++|+.+++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44455555555555555555555555555555555544422 555555555555555555555555543
No 158
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.98 E-value=4.1e-08 Score=73.33 Aligned_cols=101 Identities=14% Similarity=0.111 Sum_probs=94.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 039523 53 WFALGAAALKARDVEKALDVFTRAVQLDPEN---GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG---WQLWENYSH 126 (244)
Q Consensus 53 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~ 126 (244)
.+..|.-++..|+|.+|...|..-++..|++ +.+++-||.+++.+|+++.|...|..+++-.|++ ++.++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6889999999999999999999999999975 6789999999999999999999999999987765 788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCchh
Q 039523 127 VALDVGNIGQALEAVQMVLNITNNKRI 153 (244)
Q Consensus 127 ~~~~~~~~~~A~~~~~~al~~~p~~~~ 153 (244)
+...+|+.++|...|+++++..|+.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 999999999999999999999999553
No 159
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.97 E-value=2e-07 Score=72.68 Aligned_cols=157 Identities=16% Similarity=0.097 Sum_probs=98.7
Q ss_pred HHHHHhhcc-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC---
Q 039523 5 MKKLWKFQM-ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD--- 80 (244)
Q Consensus 5 ~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--- 80 (244)
+.++-+..+ +........+......|++..|.....+++...|.++.+......+|.+.|++.+....+.+.-+..
T Consensus 141 L~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~ 220 (400)
T COG3071 141 LAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLS 220 (400)
T ss_pred HHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCC
Confidence 344444422 2334455666666666666777666666666666666666666666666666666665555432221
Q ss_pred ---------------------------------------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh---------
Q 039523 81 ---------------------------------------PENGEAWNIIACLHMIKNKSKEAFIAFKEALK--------- 112 (244)
Q Consensus 81 ---------------------------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--------- 112 (244)
.+++.....++.-+...|++++|.+..+.+++
T Consensus 221 ~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~ 300 (400)
T COG3071 221 DEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR 300 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH
Confidence 13345555566666666666666665554443
Q ss_pred ----------------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 039523 113 ----------------------LKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIV 162 (244)
Q Consensus 113 ----------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 162 (244)
..|+++..+..+|..|.+.+.|.+|..+|+.+++..|+.. +...+....
T Consensus 301 ~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~ 371 (400)
T COG3071 301 LIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADAL 371 (400)
T ss_pred HHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHH
Confidence 3577788888888888888888888888888888877733 333343333
No 160
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.97 E-value=3.6e-08 Score=70.93 Aligned_cols=145 Identities=11% Similarity=0.088 Sum_probs=112.5
Q ss_pred hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 039523 3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPE 82 (244)
Q Consensus 3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 82 (244)
-.|.+++.+.|+.+.++..+|..+...|+|+.|.+.|...++++|.+..+..+.|..+.--|++.-|.+.+.+-.+.+|+
T Consensus 86 ~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~ 165 (297)
T COG4785 86 NDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPN 165 (297)
T ss_pred hhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cHH--HHHHHH--------------HH--------------HHHcCChHHHHHHHHHHHhcCCCC-------HHHHHHHH
Q 039523 83 NGE--AWNIIA--------------CL--------------HMIKNKSKEAFIAFKEALKLKRNG-------WQLWENYS 125 (244)
Q Consensus 83 ~~~--~~~~l~--------------~~--------------~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~la 125 (244)
+|- .|..+. .- -...|+.. -...++++..-..++ .+.++.+|
T Consensus 166 DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~ 244 (297)
T COG4785 166 DPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKIS-EETLMERLKADATDNTSLAEHLTETYFYLG 244 (297)
T ss_pred ChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence 873 222111 11 11122211 111223333322232 46788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhc
Q 039523 126 HVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 126 ~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
..+...|+.++|...|+-++.-+
T Consensus 245 K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 245 KYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHhccccHHHHHHHHHHHHHHh
Confidence 99999999999999999888653
No 161
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.96 E-value=1.5e-07 Score=84.69 Aligned_cols=141 Identities=11% Similarity=0.089 Sum_probs=73.7
Q ss_pred hHHHHHHhhc-cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 039523 3 PAMKKLWKFQ-MISQLELRSLARSAYNRGEYETSKILREAAMAL--NSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79 (244)
Q Consensus 3 ~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 79 (244)
++|+++.+.+ +.+...|..+...|.+.|++++|...|.+.... .| +...+..+...+.+.|++++|.+.+..+.+.
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 3344444332 234445555555555555555555555555443 23 2344555555555555555555555555543
Q ss_pred C-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523 80 D-PENGEAWNIIACLHMIKNKSKEAFIAFKEALKL--KRNGWQLWENYSHVALDVGNIGQALEAVQMVL 145 (244)
Q Consensus 80 ~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 145 (244)
. +.+...+..+...|.+.|++++|...|++.... .| +...|..+...|.+.|++++|.+.|++..
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 224445555556666666666666666555432 23 34555666666666666666666666544
No 162
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=4.9e-08 Score=79.54 Aligned_cols=140 Identities=17% Similarity=0.208 Sum_probs=111.6
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc
Q 039523 4 AMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN 83 (244)
Q Consensus 4 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 83 (244)
...+.+...|++..++...-.+..+.++|++|+...+.-......+ ...+..+.|.++.+..++|+.+++ -.++.+
T Consensus 34 ~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~ 109 (652)
T KOG2376|consen 34 TANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTLK---GLDRLD 109 (652)
T ss_pred HHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHHh---cccccc
Confidence 3455666789999999999999999999999985554433322222 223788999999999999999998 556667
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------------------------------C-CCHHHHHHHHHHHHHcC
Q 039523 84 GEAWNIIACLHMIKNKSKEAFIAFKEALKLK------------------------------R-NGWQLWENYSHVALDVG 132 (244)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------------------------p-~~~~~~~~la~~~~~~~ 132 (244)
.......|.+++++|+|++|+..|+..++.+ | ++...+++.+.++...|
T Consensus 110 ~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~g 189 (652)
T KOG2376|consen 110 DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENG 189 (652)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcc
Confidence 7788889999999999999999999775442 2 24567899999999999
Q ss_pred CHHHHHHHHHHHHhh
Q 039523 133 NIGQALEAVQMVLNI 147 (244)
Q Consensus 133 ~~~~A~~~~~~al~~ 147 (244)
+|.+|++.+++++++
T Consensus 190 ky~qA~elL~kA~~~ 204 (652)
T KOG2376|consen 190 KYNQAIELLEKALRI 204 (652)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999999999554
No 163
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.95 E-value=6.5e-09 Score=82.99 Aligned_cols=70 Identities=26% Similarity=0.363 Sum_probs=61.7
Q ss_pred hCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 039523 45 LNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEA---WNIIACLHMIKNKSKEAFIAFKEALKLK 114 (244)
Q Consensus 45 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~---~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 114 (244)
.+|+++.+++++|.++...|++++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 357788899999999999999999999999999999998854 9999999999999999999999999873
No 164
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.94 E-value=3.7e-07 Score=82.21 Aligned_cols=143 Identities=11% Similarity=0.040 Sum_probs=89.3
Q ss_pred hHHHHHHhhcc-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 039523 3 PAMKKLWKFQM-ISQLELRSLARSAYNRGEYETSKILREAAMALN--SLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79 (244)
Q Consensus 3 ~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 79 (244)
++|+++.+... -+...|..+...|.+.|++++|...|.+..... | +...|..+...+.+.|++++|.+.+.++...
T Consensus 493 ~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~ 571 (1060)
T PLN03218 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAE 571 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34555544322 245666666677777777777777776665432 3 4556666667777777777777777666542
Q ss_pred ----CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 80 ----DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK-RNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 80 ----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
.| +...|..+...+.+.|++++|.+.|++..+.. +.+...|..+...|.+.|++++|...|++..+.
T Consensus 572 ~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 572 THPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred cCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 23 34556666666777777777777777666654 334566666667777777777777777666554
No 165
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.94 E-value=3.7e-07 Score=64.27 Aligned_cols=129 Identities=16% Similarity=0.145 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CcHHHHHHHHH
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMA-LNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP--ENGEAWNIIAC 92 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~l~~ 92 (244)
..-.+.+|......|++.+|...|.+++. ...+++..+..++...+..+++..|...+++..+.+| ..++....+|.
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR 168 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR 168 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence 34456778888888888888888888776 3456677777888888888888888888888887777 35667777788
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523 93 LHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVL 145 (244)
Q Consensus 93 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 145 (244)
++..+|++.+|...|+.++...|+ +......+..+.++|+..++...+....
T Consensus 169 ~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 169 TLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 888888888888888888887775 4556666777777787766655544433
No 166
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.93 E-value=7.7e-07 Score=69.51 Aligned_cols=144 Identities=15% Similarity=0.142 Sum_probs=121.4
Q ss_pred hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------------------------------------
Q 039523 3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALN------------------------------------ 46 (244)
Q Consensus 3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------------------------------------ 46 (244)
.-..++++..|.+++++....++|...|+|........+.-+..
T Consensus 174 ~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 174 ENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 45667888899999999999999999999999998888764321
Q ss_pred ------CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------------------------------CCcHHHHHH
Q 039523 47 ------SLYPDGWFALGAAALKARDVEKALDVFTRAVQLD-------------------------------PENGEAWNI 89 (244)
Q Consensus 47 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-------------------------------p~~~~~~~~ 89 (244)
..++.+...++.-+.+.|+.++|.+....+++.. |++|..+..
T Consensus 254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~t 333 (400)
T COG3071 254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLST 333 (400)
T ss_pred hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHH
Confidence 1234556677888889999999999999776643 777889999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 90 IACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
+|..+.+.+.|.+|..+|+.+++..|+ ...+..+|.++..+|+...|.+++++++..
T Consensus 334 LG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 334 LGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999998875 567889999999999999999999998854
No 167
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.92 E-value=1.8e-07 Score=74.65 Aligned_cols=148 Identities=10% Similarity=0.176 Sum_probs=119.8
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|.+.|++||..+-.+...|...+.+-+..+....|...+.+++..-|.....|+.+..+-...|+...|.+.|++.+...
T Consensus 92 ARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~ 171 (677)
T KOG1915|consen 92 ARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWE 171 (677)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCC
Confidence 45688999999988899999999999999999999999999999999888999999888889999999999999999988
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
|+ ..+|......-.+.+..+-|...|++-+-.+|+ ...|...+..-...|+...|...|++|++...+
T Consensus 172 P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 172 PD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred Cc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 84 456666666666777777777777777777764 566777777777777777777777777766544
No 168
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=1.1e-07 Score=70.38 Aligned_cols=150 Identities=17% Similarity=0.156 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC------CCcHHHHH
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALN-SLYPDGWFALGAAALKARDVEKALDVFTRAVQLD------PENGEAWN 88 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------p~~~~~~~ 88 (244)
..+.+.+..++.-.|+|.-....+.+.++.+ |..+.....+|.+.++.|+.+.|..+++..-+.. .....+..
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 3566788888999999999999999999998 5677888899999999999999999999554432 23445677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHh
Q 039523 89 IIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNL 165 (244)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 165 (244)
+.+.++...+++.+|...+.+++..+|.++.+..+.|.|....|+..+|+..++.++.+.|........+-.+...+
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 78889999999999999999999999999999999999999999999999999999999999665554444444333
No 169
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.88 E-value=1.4e-07 Score=82.45 Aligned_cols=135 Identities=13% Similarity=0.099 Sum_probs=107.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CcHHHHHHH
Q 039523 15 SQLELRSLARSAYNRGEYETSKILREAAMALN--SLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP--ENGEAWNII 90 (244)
Q Consensus 15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~l 90 (244)
+...|..+...|...|+.++|+..|++..... | +...+..+...+.+.|..++|.++|+...+..+ .+...|..+
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 56788999999999999999999999987643 4 566677888888899999999999988876433 234567778
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523 91 ACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR 152 (244)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 152 (244)
..++.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...+++.+++.|++.
T Consensus 469 i~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~ 528 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL 528 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC
Confidence 88899999999998888764 2334 456788888888889999999999998888888743
No 170
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.86 E-value=2.3e-07 Score=71.85 Aligned_cols=136 Identities=13% Similarity=0.149 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 039523 17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALK-ARDVEKALDVFTRAVQLDPENGEAWNIIACLHM 95 (244)
Q Consensus 17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 95 (244)
-+|..+.+...+.+..+.|...|.++.+..+.+..+|...|.+... .++.+.|...|+.+++..|.+...|......+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3677788888888889999999999997777788999999999777 566677999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523 96 IKNKSKEAFIAFKEALKLKRNGW---QLWENYSHVALDVGNIGQALEAVQMVLNITNNKR 152 (244)
Q Consensus 96 ~~~~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 152 (244)
..|+.+.|...|++++..-|... .+|..........|+.+......+++.+..|+..
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999877554 6899999999999999999999999999988833
No 171
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=4.9e-07 Score=73.90 Aligned_cols=147 Identities=14% Similarity=0.113 Sum_probs=116.2
Q ss_pred HHHHHHhh---ccC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039523 4 AMKKLWKF---QMI---SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAV 77 (244)
Q Consensus 4 ~~~~al~~---~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 77 (244)
-|+.|+.+ ++. .....+..|.++++.++.++|+..++ ..++.+..+....|.++++.|+|++|...|+..+
T Consensus 61 ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~ 137 (652)
T KOG2376|consen 61 KYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLA 137 (652)
T ss_pred HHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45666554 332 12223689999999999999999998 5667677788889999999999999999999875
Q ss_pred hcC------------------------------C-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CCC-
Q 039523 78 QLD------------------------------P-ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK--------RNG- 117 (244)
Q Consensus 78 ~~~------------------------------p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------p~~- 117 (244)
+.+ | ++.+.+++.+.++...|+|.+|++.+++++++. .+.
T Consensus 138 kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eE 217 (652)
T KOG2376|consen 138 KNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEE 217 (652)
T ss_pred hcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchh
Confidence 543 2 234678999999999999999999999995441 111
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchh
Q 039523 118 ------WQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRI 153 (244)
Q Consensus 118 ------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 153 (244)
..+...++.++..+|+-++|...|...++.+|-+..
T Consensus 218 eie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~ 259 (652)
T KOG2376|consen 218 EIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEP 259 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCch
Confidence 245678899999999999999999999999887543
No 172
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.84 E-value=8.5e-07 Score=65.98 Aligned_cols=147 Identities=26% Similarity=0.264 Sum_probs=112.8
Q ss_pred HHHHHHh--hccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHH-HHHHccCHHHHHHHHHHHHhcC
Q 039523 4 AMKKLWK--FQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGA-AALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 4 ~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
.+...+. ..+.....+...+......+++..++..+..++...+.........+. ++...|++++|...+.+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 160 (291)
T COG0457 81 LLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELD 160 (291)
T ss_pred HHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3444444 567777788888888888888888888888888877766555555555 7888888888888888887766
Q ss_pred C---CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 81 P---ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN-GWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 81 p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
| .........+..+...++++.++..+.+++...+. ....+..++.++...++++.|...+..++...|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 161 PELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 6 34555666666677788888888888888888887 6788888888888888888888888888888776
No 173
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.84 E-value=5.6e-09 Score=64.63 Aligned_cols=66 Identities=21% Similarity=0.260 Sum_probs=38.6
Q ss_pred cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---C----CChhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523 13 MISQLELRSLARSAYNRGEYETSKILREAAMALN---S----LYPDGWFALGAAALKARDVEKALDVFTRAVQ 78 (244)
Q Consensus 13 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 78 (244)
|+.+.++..+|.++...|++++|+.+|++++++. + ....++.++|.++...|++++|+++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455666667777777777777777776666541 1 1133455666666666666666666666554
No 174
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.82 E-value=9.1e-08 Score=67.02 Aligned_cols=65 Identities=26% Similarity=0.334 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCH----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039523 32 YETSKILREAAMALNSLYPDGWFALGAAALKARDV----------EKALDVFTRAVQLDPENGEAWNIIACLHMI 96 (244)
Q Consensus 32 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 96 (244)
|+.|.+.++.....+|.++..+++-|.++..+.++ ++|+.-|++++.++|+..++++.+|.++..
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 45666666666677777777666666666555332 344444445555555555555555555443
No 175
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.82 E-value=7.7e-09 Score=63.99 Aligned_cols=64 Identities=23% Similarity=0.285 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 84 GEAWNIIACLHMIKNKSKEAFIAFKEALKLK-------RNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
..++.++|.++..+|++++|+.+|++++.+. |....++.++|.++...|++++|+.++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455666666666666666666666665441 112445666666666666666666666666654
No 176
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.82 E-value=2.6e-07 Score=80.86 Aligned_cols=145 Identities=13% Similarity=0.076 Sum_probs=113.5
Q ss_pred chHHHHHHhhc-cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 2 MPAMKKLWKFQ-MISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 2 i~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
..++..+++.. +.+...+..+...|.+.|+.++|...|++..+ | +...|..+...|.+.|+.++|++.|++..+..
T Consensus 345 ~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g 421 (697)
T PLN03081 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421 (697)
T ss_pred HHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45666776664 55677888999999999999999999998754 3 66789999999999999999999999987643
Q ss_pred C-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 81 P-ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR--NGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 81 p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
. -+...+..+...+.+.|..++|..+|+...+..+ .+...|..+...+.+.|++++|.+.+++. ...|+
T Consensus 422 ~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~ 493 (697)
T PLN03081 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPT 493 (697)
T ss_pred CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCC
Confidence 2 2455677777888999999999999998875422 23456788889999999999999988764 23444
No 177
>PLN03077 Protein ECB2; Provisional
Probab=98.81 E-value=5.3e-07 Score=80.71 Aligned_cols=144 Identities=14% Similarity=0.061 Sum_probs=116.7
Q ss_pred cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CcHHHHH
Q 039523 13 MISQLELRSLARSAYNRGEYETSKILREAAMAL--NSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP--ENGEAWN 88 (244)
Q Consensus 13 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~ 88 (244)
+.+...|..+...|...|+.++|+..|++..+. .| +...+..+...+.+.|.+++|.++|+...+..+ .+...|.
T Consensus 551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 557888999999999999999999999998874 45 445566677789999999999999999884432 2446788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHH
Q 039523 89 IIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLE 159 (244)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 159 (244)
.+..++.+.|++++|.+.+++. ...|+ ..+|..+-..+...|+.+.+....++.+++.|++......+.
T Consensus 630 ~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~ 698 (857)
T PLN03077 630 CVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLC 698 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHH
Confidence 8999999999999999999875 35554 677888888888899999999999999999998654444443
No 178
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.80 E-value=7.1e-07 Score=59.10 Aligned_cols=91 Identities=21% Similarity=0.191 Sum_probs=46.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcC
Q 039523 23 ARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN----GEAWNIIACLHMIKN 98 (244)
Q Consensus 23 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~~ 98 (244)
|......|+.+.|++.|.+++.+.|..+.++.+.+..+.-.|+.++|++.+++++++.... -.++...|.+|...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4444445555555555555555555555555555555555555555555555555543221 123444555555555
Q ss_pred ChHHHHHHHHHHHhc
Q 039523 99 KSKEAFIAFKEALKL 113 (244)
Q Consensus 99 ~~~~A~~~~~~a~~~ 113 (244)
+-+.|..-|+.+-++
T Consensus 130 ~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 130 NDDAARADFEAAAQL 144 (175)
T ss_pred chHHHHHhHHHHHHh
Confidence 555555555544443
No 179
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.80 E-value=1.4e-06 Score=64.84 Aligned_cols=148 Identities=20% Similarity=0.197 Sum_probs=107.3
Q ss_pred hHHHHHHhhccC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523 3 PAMKKLWKFQMI--SQLELRSLARSAYNRGEYETSKILREAAMA--LNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78 (244)
Q Consensus 3 ~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 78 (244)
..+...+...+. ........+..+...+++..+...+...+. ..+.....+...+......+++.++...+.+++.
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (291)
T COG0457 44 ELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALA 123 (291)
T ss_pred HHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344555555554 366777777788888888888888887776 5666777777888888888888888888888887
Q ss_pred cCCCcHHHHHHHHH-HHHHcCChHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 79 LDPENGEAWNIIAC-LHMIKNKSKEAFIAFKEALKLKR---NGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 79 ~~p~~~~~~~~l~~-~~~~~~~~~~A~~~~~~a~~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
..+.........+. ++...|+++.|...+.+++...| .........+..+...++++.+...+.+++...+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 124 LDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred CCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 77766555555555 77788888888888888777665 34555566666677777888888888888877776
No 180
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.80 E-value=8.8e-08 Score=67.08 Aligned_cols=97 Identities=18% Similarity=0.124 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--
Q 039523 66 VEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKS----------KEAFIAFKEALKLKRNGWQLWENYSHVALDVGN-- 133 (244)
Q Consensus 66 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~-- 133 (244)
|+.|.+.++.....+|.+++.+++.|.++..+.++ ++|+.-|++++.++|+...+++.+|.++..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 67899999999999999999999999988766444 677888889999999999999999999987653
Q ss_pred ---------HHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 039523 134 ---------IGQALEAVQMVLNITNNKRIDTELLERIV 162 (244)
Q Consensus 134 ---------~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 162 (244)
|++|..+|+++...+|++......|....
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 78899999999999999776655555543
No 181
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.79 E-value=2e-06 Score=60.70 Aligned_cols=130 Identities=9% Similarity=0.055 Sum_probs=110.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCC
Q 039523 21 SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ-LDPENGEAWNIIACLHMIKNK 99 (244)
Q Consensus 21 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~p~~~~~~~~l~~~~~~~~~ 99 (244)
.++....+.=+.+.......+.+...| ...-.+.+|....+.|++.+|...|++++. +..+++..+..++...+..++
T Consensus 61 ~~~~a~~q~ldP~R~~Rea~~~~~~Ap-Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~ 139 (251)
T COG4700 61 TLLMALQQKLDPERHLREATEELAIAP-TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE 139 (251)
T ss_pred HHHHHHHHhcChhHHHHHHHHHHhhch-hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc
Confidence 344455555667777777777777777 444567899999999999999999999986 466889999999999999999
Q ss_pred hHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523 100 SKEAFIAFKEALKLKRN--GWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK 151 (244)
Q Consensus 100 ~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 151 (244)
+..|...+++..+.+|. .+.....+|..+...|.+.+|...|+.++...|+.
T Consensus 140 ~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 140 FAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred HHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 99999999999999875 46778889999999999999999999999999983
No 182
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.6e-07 Score=68.43 Aligned_cols=96 Identities=19% Similarity=0.209 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 039523 18 ELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIK 97 (244)
Q Consensus 18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 97 (244)
-+..-|+.++....|+.|+.+|.+++.++|..+..|.+.+.++++.++++.+..-..++++++|+....++.+|.+....
T Consensus 12 qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 12 QLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS 91 (284)
T ss_pred HHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh
Confidence 34566788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhc
Q 039523 98 NKSKEAFIAFKEALKL 113 (244)
Q Consensus 98 ~~~~~A~~~~~~a~~~ 113 (244)
..|++|+..+.++..+
T Consensus 92 ~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAYSL 107 (284)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999999999655
No 183
>PLN03077 Protein ECB2; Provisional
Probab=98.78 E-value=4.9e-07 Score=80.96 Aligned_cols=143 Identities=10% Similarity=0.105 Sum_probs=119.4
Q ss_pred CchHHHHHHhh--ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHccCHHHHHHHHHHH
Q 039523 1 MMPAMKKLWKF--QMISQLELRSLARSAYNRGEYETSKILREAAMALNSL--YPDGWFALGAAALKARDVEKALDVFTRA 76 (244)
Q Consensus 1 Ai~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a 76 (244)
|+++|++..+. .|+ ...+..+-..+...|..++|..+|+...+..+- +...+..+..++.+.|++++|.+.+++.
T Consensus 573 A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 573 AVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 46778887764 455 444666667789999999999999999854322 5568899999999999999999999885
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523 77 VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLN 146 (244)
Q Consensus 77 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 146 (244)
...| ++.+|..+-..+...|+.+.+....++++++.|++...+..++.+|...|++++|....+...+
T Consensus 652 -~~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 652 -PITP-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred -CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 3555 4677888877888899999999999999999999999999999999999999999988877654
No 184
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.78 E-value=2.7e-07 Score=61.02 Aligned_cols=98 Identities=22% Similarity=0.241 Sum_probs=87.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHH
Q 039523 53 WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG----WQLWENYSHVA 128 (244)
Q Consensus 53 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~la~~~ 128 (244)
+..-|......|+.+.|++.|.+++.+.|..+.+|.+.+..+.-+|+.++|++-+.+++++.... ..++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 44567788899999999999999999999999999999999999999999999999999996543 35677889999
Q ss_pred HHcCCHHHHHHHHHHHHhhcCC
Q 039523 129 LDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 129 ~~~~~~~~A~~~~~~al~~~p~ 150 (244)
..+|+.+.|..-|+.+-++...
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCH
Confidence 9999999999999999887544
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.76 E-value=1.2e-07 Score=73.69 Aligned_cols=132 Identities=12% Similarity=0.088 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CC----hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--C----c
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNS--LY----PDGWFALGAAALKARDVEKALDVFTRAVQLDP--E----N 83 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~----~ 83 (244)
...+...|..|...|++++|...|.++....- ++ ...+...+.++.+. ++++|++++++++.+.- . -
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a 113 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 45677889999999999999999999977542 11 34566666666555 99999999999998632 1 2
Q ss_pred HHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523 84 GEAWNIIACLHMIK-NKSKEAFIAFKEALKLKRN--G----WQLWENYSHVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 84 ~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
..++..+|.++... |++++|+++|++|+..... . ..++..+|.++...|+|++|+..|++.....
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 45788899999998 9999999999999987321 1 4567889999999999999999999998764
No 186
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.75 E-value=2.6e-08 Score=78.14 Aligned_cols=133 Identities=11% Similarity=0.168 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------hhHHHHHHHHHHHccCHHHHHHHHHHHHhcC----CC--c
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSLY------PDGWFALGAAALKARDVEKALDVFTRAVQLD----PE--N 83 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----p~--~ 83 (244)
.+++-++|+.|+..|+|+.|+...+.-+.+.... -.++.++|.++.-.|+++.|+++|++.+.+. .. .
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 5678899999999999999999988887765433 2478899999999999999999999876542 22 3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523 84 GEAWNIIACLHMIKNKSKEAFIAFKEALKLKR------NGWQLWENYSHVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
+...+.+|..|.-..++++|+.++.+-+.+.. ....+++.+|..+..+|..++|+.+.++.++..
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 45678899999999999999999998877642 346788999999999999999999888887764
No 187
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=1e-06 Score=70.51 Aligned_cols=145 Identities=14% Similarity=0.204 Sum_probs=134.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH
Q 039523 5 MKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENG 84 (244)
Q Consensus 5 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 84 (244)
|+..+..+.-+...|...|.--..++++..|...|++|+..+..+...|..++.+-++.+....|...+++++.+-|.-.
T Consensus 62 fEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd 141 (677)
T KOG1915|consen 62 FEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD 141 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH
Confidence 55566666667888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 85 EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
..|+.....-..+|+..-|...|++-+...|+ ..+|......-...+..+.|...|++.+-..|+
T Consensus 142 qlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~ 206 (677)
T KOG1915|consen 142 QLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK 206 (677)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc
Confidence 99999999999999999999999999999995 678998999999999999999999999988888
No 188
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=6e-08 Score=70.67 Aligned_cols=94 Identities=16% Similarity=0.201 Sum_probs=87.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 039523 55 ALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNI 134 (244)
Q Consensus 55 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~ 134 (244)
.-|..++....|+.|+.+|.+++.++|..+..|.+.+.|+++.++++.+.....+++++.|+.....+.+|.+......|
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 34666777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 039523 135 GQALEAVQMVLNIT 148 (244)
Q Consensus 135 ~~A~~~~~~al~~~ 148 (244)
.+|+..+.++..+.
T Consensus 95 ~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLL 108 (284)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999996553
No 189
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.70 E-value=5.7e-08 Score=76.26 Aligned_cols=146 Identities=14% Similarity=0.144 Sum_probs=88.2
Q ss_pred chHHHHHHhhccCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCChhHHHHHHHHHHHccCHHHHHH
Q 039523 2 MPAMKKLWKFQMIS----QLELRSLARSAYNRGEYETSKILREAAMALN------SLYPDGWFALGAAALKARDVEKALD 71 (244)
Q Consensus 2 i~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~ 71 (244)
+..|+.|++...++ ..+|..+|+.|+..++|++|+++...=+.+. -..+...-++|..+-..|.|++|+.
T Consensus 37 v~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~ 116 (639)
T KOG1130|consen 37 VDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALT 116 (639)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHH
Confidence 46788888886655 3467788888888888888888754433221 1122334456666666666666666
Q ss_pred HHHHHHhcCC------CcHH------------------------------------------------------------
Q 039523 72 VFTRAVQLDP------ENGE------------------------------------------------------------ 85 (244)
Q Consensus 72 ~~~~a~~~~p------~~~~------------------------------------------------------------ 85 (244)
++.+-+.+.. ....
T Consensus 117 cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGR 196 (639)
T KOG1130|consen 117 CCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGR 196 (639)
T ss_pred HHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcc
Confidence 6555443321 0112
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 86 AWNIIACLHMIKNKSKEAFIAFKEALKLKRN------GWQLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
++-++|..|+-+|+|++|+..-+.-+.+... ...++.++|.++.-+|+++.|+++|++.+.+
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 3334444455556666666555544443221 1356778888888888888888888877654
No 190
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=5.2e-07 Score=69.74 Aligned_cols=127 Identities=17% Similarity=0.109 Sum_probs=100.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHH
Q 039523 24 RSAYNRGEYETSKILREAAMALNSLYP-DGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKE 102 (244)
Q Consensus 24 ~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 102 (244)
.-+....+|..|+..++-....+.+.. ..-..+|.|+++.|+|++|...|.-+...+..+...+.+++.|++..|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 345677899999999998887765443 5667899999999999999999999999888889999999999999999999
Q ss_pred HHHHHHHHHhc--------------CC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 103 AFIAFKEALKL--------------KR------------NGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 103 A~~~~~~a~~~--------------~p------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
|.....++-+. +. +..+-...++.+....-.|++|++.|++++.-+|+
T Consensus 110 A~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 110 AKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 98876654221 11 11122344556666666799999999999988887
No 191
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.65 E-value=2.3e-06 Score=76.39 Aligned_cols=143 Identities=14% Similarity=0.176 Sum_probs=93.8
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-
Q 039523 4 AMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPE- 82 (244)
Q Consensus 4 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~- 82 (244)
.|++|.+. -+.-.++..|..+|...+++++|.++++..++...+...+|..+|..+++.++-++|...+.+|++.-|.
T Consensus 1519 VFeRAcqy-cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1519 VFERACQY-CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred HHHHHHHh-cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence 44454443 1223455666666666677777777777776666666666777777777766666677777777766665
Q ss_pred -cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 83 -NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 83 -~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
+.......|.+.++.|+.+.+...|+..+.-.|.-.++|.-+...-...|+.+.++..|++++.+
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 45556666666667777777777777666667766667776666666667766666777666655
No 192
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.64 E-value=8.9e-07 Score=68.59 Aligned_cols=145 Identities=14% Similarity=0.102 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh------hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----c---
Q 039523 17 LELRSLARSAYNRGEYETSKILREAAMALNSLYP------DGWFALGAAALKARDVEKALDVFTRAVQLDPE----N--- 83 (244)
Q Consensus 17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~----~--- 83 (244)
.+...+|+.+..++.++++++.|+.+++...++. .++..+|..+-+..++++|.-+..++..+... +
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 5677899999999999999999999998764432 47889999999999999999999988876432 2
Q ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhh
Q 039523 84 ---GEAWNIIACLHMIKNKSKEAFIAFKEALKLK------RNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRID 154 (244)
Q Consensus 84 ---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 154 (244)
..+.+.++..+..+|....|.++++++.++. +-......-+|++|...|+.+.|..-|+.+..........
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdr 282 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDR 282 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhh
Confidence 2356788999999999999999999998773 2335667889999999999999999999998876553333
Q ss_pred HHHHHHH
Q 039523 155 TELLERI 161 (244)
Q Consensus 155 ~~~l~~~ 161 (244)
...+..+
T Consensus 283 mgqv~al 289 (518)
T KOG1941|consen 283 MGQVEAL 289 (518)
T ss_pred HHHHHHH
Confidence 3333333
No 193
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.63 E-value=1.2e-07 Score=51.54 Aligned_cols=38 Identities=34% Similarity=0.682 Sum_probs=15.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 039523 53 WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNII 90 (244)
Q Consensus 53 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 90 (244)
+..+|.++...|++++|++.|+++++.+|+++.+|..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 33344444444444444444444444444444444333
No 194
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.62 E-value=1.8e-05 Score=58.97 Aligned_cols=150 Identities=17% Similarity=0.179 Sum_probs=118.8
Q ss_pred CchHHHHHHhhccCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh---HHHHHHHHHHHc--------cCH
Q 039523 1 MMPAMKKLWKFQMIS---QLELRSLARSAYNRGEYETSKILREAAMALNSLYPD---GWFALGAAALKA--------RDV 66 (244)
Q Consensus 1 Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~--------g~~ 66 (244)
|+..|+++...+|.+ ..+...++..+++.++++.|+...++-+...|.++. +++..|.+++.. .-.
T Consensus 53 A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~ 132 (254)
T COG4105 53 AIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAA 132 (254)
T ss_pred HHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHH
Confidence 567788888777664 678999999999999999999999999999987764 566777776543 224
Q ss_pred HHHHHHHHHHHhcCCCcHH-----------------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 039523 67 EKALDVFTRAVQLDPENGE-----------------AWNIIACLHMIKNKSKEAFIAFKEALKLKRNG---WQLWENYSH 126 (244)
Q Consensus 67 ~~A~~~~~~a~~~~p~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~ 126 (244)
.+|...++..+...|++.- --..+|..|.+.|.+..|+.-++.+++..|+. ..++..+..
T Consensus 133 ~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~e 212 (254)
T COG4105 133 RAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEE 212 (254)
T ss_pred HHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 6788889999999998742 12456788999999999999999999987765 566788888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhc-CCc
Q 039523 127 VALDVGNIGQALEAVQMVLNIT-NNK 151 (244)
Q Consensus 127 ~~~~~~~~~~A~~~~~~al~~~-p~~ 151 (244)
+|..+|-.++|...- +.|..+ |+.
T Consensus 213 aY~~lgl~~~a~~~~-~vl~~N~p~s 237 (254)
T COG4105 213 AYYALGLTDEAKKTA-KVLGANYPDS 237 (254)
T ss_pred HHHHhCChHHHHHHH-HHHHhcCCCC
Confidence 999999999886654 555554 443
No 195
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.59 E-value=1.4e-07 Score=75.48 Aligned_cols=110 Identities=20% Similarity=0.164 Sum_probs=92.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 039523 19 LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKN 98 (244)
Q Consensus 19 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 98 (244)
.-.-+..++..++|+.|+..|.++++++|+++..+.+.+..+.+.+++..|+..+.++++.+|....+|+..|.+....+
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34556777788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 039523 99 KSKEAFIAFKEALKLKRNGWQLWENYSHVA 128 (244)
Q Consensus 99 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 128 (244)
++.+|...|+....+.|+++.+...+..|-
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 888888888888888888887776666553
No 196
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.59 E-value=5.1e-06 Score=74.25 Aligned_cols=148 Identities=14% Similarity=0.114 Sum_probs=99.4
Q ss_pred hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCC----hhH-------------------------
Q 039523 3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMAL-NSLY----PDG------------------------- 52 (244)
Q Consensus 3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~----~~~------------------------- 52 (244)
+.|++.+.-+|++.-.|...-..+...++.++|++..++|+.. ++.. ..+
T Consensus 1445 eDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 4577888889999999999999999999999999999999864 2211 112
Q ss_pred --------HHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CHHHHH
Q 039523 53 --------WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN--GWQLWE 122 (244)
Q Consensus 53 --------~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~ 122 (244)
+..|..+|...+.+++|.++++..++...+...+|..+|..++.+++-+.|...+.+|++.-|. +..+..
T Consensus 1525 qycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Is 1604 (1710)
T KOG1070|consen 1525 QYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFIS 1604 (1710)
T ss_pred HhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHH
Confidence 3344445555566666666666666655555666666666666666666666666666666665 455555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 123 NYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 123 ~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
..|.+.++.|+.+.++..|+..+.-.|.
T Consensus 1605 kfAqLEFk~GDaeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1605 KFAQLEFKYGDAERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred HHHHHHhhcCCchhhHHHHHHHHhhCcc
Confidence 6666666666666666666666666655
No 197
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.59 E-value=1.6e-07 Score=50.93 Aligned_cols=43 Identities=28% Similarity=0.376 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHH
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGA 58 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 58 (244)
+.++..+|..|...|++++|+..|+++++.+|+++.+|..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3678999999999999999999999999999999999999885
No 198
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=2.9e-05 Score=57.95 Aligned_cols=88 Identities=17% Similarity=0.148 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHH
Q 039523 65 DVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQAL-EAVQM 143 (244)
Q Consensus 65 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~ 143 (244)
++.+|.-+|+..-...|..+......+.|+..+|+|++|...++.++..+++++..+.++..+-...|...++. +.+.+
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 34455555555554444455555555555555555555555555555555555555555555555555443332 33333
Q ss_pred HHhhcCCch
Q 039523 144 VLNITNNKR 152 (244)
Q Consensus 144 al~~~p~~~ 152 (244)
.....|.++
T Consensus 268 Lk~~~p~h~ 276 (299)
T KOG3081|consen 268 LKLSHPEHP 276 (299)
T ss_pred HHhcCCcch
Confidence 333444433
No 199
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.56 E-value=8.8e-08 Score=48.65 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=23.5
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHH
Q 039523 4 AMKKLWKFQMISQLELRSLARSAYNRGEYETSK 36 (244)
Q Consensus 4 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 36 (244)
+|+++++++|+++.+|+.+|.++...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 366777777777777777777777777777764
No 200
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=5.1e-06 Score=63.91 Aligned_cols=142 Identities=13% Similarity=-0.011 Sum_probs=117.8
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 039523 4 AMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMAL-NSLY---PDGWFALGAAALKARDVEKALDVFTRAVQL 79 (244)
Q Consensus 4 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 79 (244)
..++.++..|.+--++..--..++.+|+.+.-...+++.+.. +++- ..+.-.++..+...|-|++|.+.-.+++++
T Consensus 125 ~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqi 204 (491)
T KOG2610|consen 125 EWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQI 204 (491)
T ss_pred HHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccC
Confidence 456888889999888888889999999999999999999877 6655 455667889999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523 80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG----WQLWENYSHVALDVGNIGQALEAVQMVL 145 (244)
Q Consensus 80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al 145 (244)
+|.+..+....+.++...|++.++.+...+.-..-... ...|...+.++..-+.|+.|++.|.+-+
T Consensus 205 N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 205 NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 99999999999999999999999999887643332211 1234556888888899999999998765
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=1.2e-05 Score=59.94 Aligned_cols=116 Identities=17% Similarity=0.139 Sum_probs=102.0
Q ss_pred chHHHHHHhhc-cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCChhHHHHHHHHHHHccCHHHHHHHHH
Q 039523 2 MPAMKKLWKFQ-MISQLELRSLARSAYNRGEYETSKILREAAMALN------SLYPDGWFALGAAALKARDVEKALDVFT 74 (244)
Q Consensus 2 i~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~ 74 (244)
+..+.+.++.+ |.++.....+|.+.++.|+...|..++++.-+.. ..+..+..+.+.++.-.+++..|...+.
T Consensus 197 ~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~ 276 (366)
T KOG2796|consen 197 VDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFT 276 (366)
T ss_pred HHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHh
Confidence 35678888887 6788999999999999999999999999554332 2345577888999999999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523 75 RAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG 117 (244)
Q Consensus 75 ~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 117 (244)
+++..+|.++.+..+.|.|+...|+..+|++..+.++...|..
T Consensus 277 ~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 277 EILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 9999999999999999999999999999999999999999964
No 202
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.48 E-value=1.2e-05 Score=65.07 Aligned_cols=147 Identities=12% Similarity=0.038 Sum_probs=108.4
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-------------------------ChhHHHHH
Q 039523 2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSL-------------------------YPDGWFAL 56 (244)
Q Consensus 2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------------------------~~~~~~~l 56 (244)
|+.-++|++++|+.+.+|..||.... .-..+|..+++++++.... ...+...+
T Consensus 188 IkaA~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRL 265 (539)
T PF04184_consen 188 IKAAKEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRL 265 (539)
T ss_pred HHHHHHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHH
Confidence 46678999999999999998886432 2345666666666553210 02345689
Q ss_pred HHHHHHccCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHH-cC
Q 039523 57 GAAALKARDVEKALDVFTRAVQLDPE--NGEAWNIIACLHMIKNKSKEAFIAFKEALKL-KRNGWQLWENYSHVALD-VG 132 (244)
Q Consensus 57 a~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~la~~~~~-~~ 132 (244)
|.|..+.|+.++|++.+...++..|. +..++.++..++...+.|.++...+.+.-.. -|++....+.-+.+..+ .+
T Consensus 266 AmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~ 345 (539)
T PF04184_consen 266 AMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVG 345 (539)
T ss_pred HHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhc
Confidence 99999999999999999999998774 5678999999999999999999999886443 35566666555554332 12
Q ss_pred C---------------HHHHHHHHHHHHhhcCC
Q 039523 133 N---------------IGQALEAVQMVLNITNN 150 (244)
Q Consensus 133 ~---------------~~~A~~~~~~al~~~p~ 150 (244)
+ -..|.+.+.+|++.+|-
T Consensus 346 d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 346 DKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred cccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 1 23467889999999887
No 203
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=4.5e-06 Score=61.42 Aligned_cols=100 Identities=15% Similarity=0.084 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCc----------HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 039523 51 DGWFALGAAALKARDVEKALDVFTRAVQL--------DPEN----------GEAWNIIACLHMIKNKSKEAFIAFKEALK 112 (244)
Q Consensus 51 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~p~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 112 (244)
.++..-|+-+++.|+|.+|...|..++.. .|.. ...+.+++.|+...|+|-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 35667788889999999999988877543 3433 35688999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 113 LKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 113 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
..|.+..+++..|.+....=+..+|...|.++++++|.
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 99999999999999999999999999999999999998
No 204
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.45 E-value=8.4e-06 Score=63.21 Aligned_cols=119 Identities=17% Similarity=0.151 Sum_probs=99.8
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 2 MPAMKKLWKFQMISQLELRSLARSAYN-RGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 2 i~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
..+|.+|.+..+....+|...|.+.+. .++.+.|...|+.+++..|.+...|..+...+...|+.+.|..+|++++..-
T Consensus 21 R~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l 100 (280)
T PF05843_consen 21 RKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSL 100 (280)
T ss_dssp HHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc
Confidence 467889987667788999999999776 6777779999999999999999999999999999999999999999999987
Q ss_pred CCcH---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH
Q 039523 81 PENG---EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQL 120 (244)
Q Consensus 81 p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 120 (244)
|... ..|......-...|+.+...+..+++.+..|.+...
T Consensus 101 ~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 101 PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 7655 688888899999999999999999999998875433
No 205
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.44 E-value=1.8e-05 Score=71.59 Aligned_cols=148 Identities=14% Similarity=0.054 Sum_probs=103.5
Q ss_pred chHHHHHHhhccCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------hhHHHHHHHHHHHccCHHHHH
Q 039523 2 MPAMKKLWKFQMIS-----QLELRSLARSAYNRGEYETSKILREAAMALNSLY------PDGWFALGAAALKARDVEKAL 70 (244)
Q Consensus 2 i~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~ 70 (244)
...+++++...|.. ..+...+|.++...|++++|...+.+++...... ..++..+|.++...|++++|.
T Consensus 472 ~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~ 551 (903)
T PRK04841 472 ERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAY 551 (903)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 45566666643322 2345677888888889988888888888653321 235567788888889999988
Q ss_pred HHHHHHHhcCCC--------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCCHHHH
Q 039523 71 DVFTRAVQLDPE--------NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN-----GWQLWENYSHVALDVGNIGQA 137 (244)
Q Consensus 71 ~~~~~a~~~~p~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~~la~~~~~~~~~~~A 137 (244)
..+.+++..... ....+..+|.++...|++++|...+.+++..... ....+..++.++...|+++.|
T Consensus 552 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 631 (903)
T PRK04841 552 ETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNA 631 (903)
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHH
Confidence 888887765221 1234556788888889999998888888765321 244556678888888999999
Q ss_pred HHHHHHHHhhcC
Q 039523 138 LEAVQMVLNITN 149 (244)
Q Consensus 138 ~~~~~~al~~~p 149 (244)
...+.++..+.+
T Consensus 632 ~~~l~~a~~~~~ 643 (903)
T PRK04841 632 RRYLNRLENLLG 643 (903)
T ss_pred HHHHHHHHHHHh
Confidence 888888876543
No 206
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.2e-05 Score=59.34 Aligned_cols=105 Identities=15% Similarity=0.099 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCC----------hhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMAL--------NSLY----------PDGWFALGAAALKARDVEKALDVFTRAV 77 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~a~ 77 (244)
..++..-|+-++..|+|.+|...|+.|+.. .|.. ...+.+++.|++..|+|-++++.+...+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 567788899999999999999999999753 3433 3467899999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH
Q 039523 78 QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQL 120 (244)
Q Consensus 78 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 120 (244)
..+|.+..+++..|.++...=+.++|..-|.++++++|.-..+
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 9999999999999999999999999999999999999975443
No 207
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=5.7e-06 Score=62.72 Aligned_cols=124 Identities=15% Similarity=0.071 Sum_probs=106.1
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHH
Q 039523 26 AYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFI 105 (244)
Q Consensus 26 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 105 (244)
+.+..+|..|++++..-.+.+|.+-..+..+|.||....+|..|.++|++.-...|......+..+..++..+.+.+|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 36778899999999999999999999999999999999999999999999999999999888888998888888888876
Q ss_pred HHHHHHh------------------------------cCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 039523 106 AFKEALK------------------------------LKR--NGWQLWENYSHVALDVGNIGQALEAVQMVLNITN 149 (244)
Q Consensus 106 ~~~~a~~------------------------------~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 149 (244)
....... .-| ++.....+.|.+..+.|+++.|++-|..+++...
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG 175 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence 6542221 113 4567788889999999999999999999998753
No 208
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.0001 Score=55.09 Aligned_cols=140 Identities=15% Similarity=0.095 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-
Q 039523 17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM- 95 (244)
Q Consensus 17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~- 95 (244)
.....-|.++...|++++|.+..... .+..+...-..++.+..+++-|.+.++++.+++.+- .+..+|..+.
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~ 181 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVK 181 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHH
Confidence 44455567888999999999887763 344555555678889999999999999998887533 3333444332
Q ss_pred ---HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 039523 96 ---IKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVL 163 (244)
Q Consensus 96 ---~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 163 (244)
..+++.+|.-+|++.-...|..+..+...+.|+..+|+|++|...++.++..+++++..+..+-....
T Consensus 182 la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~ 252 (299)
T KOG3081|consen 182 LATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLAL 252 (299)
T ss_pred HhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 34568899999999999888889999999999999999999999999999999987655544444333
No 209
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.42 E-value=5.2e-07 Score=72.25 Aligned_cols=112 Identities=18% Similarity=0.217 Sum_probs=102.4
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 039523 55 ALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNI 134 (244)
Q Consensus 55 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~ 134 (244)
.-+...+..+.|+.|+..|.+++.++|+++..+-+.+.++.+.+++..|+.-+.++++.+|....+++..|.++...+.+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 45667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523 135 GQALEAVQMVLNITNNKRIDTELLERIVLNLE 166 (244)
Q Consensus 135 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 166 (244)
.+|...|++...+.|+.+.....+..-...+.
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs 120 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDECNKIVS 120 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHH
Confidence 99999999999999998877777766555444
No 210
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.41 E-value=2.8e-07 Score=46.77 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=9.6
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCChH
Q 039523 76 AVQLDPENGEAWNIIACLHMIKNKSK 101 (244)
Q Consensus 76 a~~~~p~~~~~~~~l~~~~~~~~~~~ 101 (244)
+++++|+++.+|+++|.++...|+++
T Consensus 5 Aie~~P~n~~a~~nla~~~~~~g~~~ 30 (34)
T PF13431_consen 5 AIELNPNNAEAYNNLANLYLNQGDYE 30 (34)
T ss_pred HHHHCCCCHHHHHHHHHHHHHCcCHH
Confidence 33333333333333333333333333
No 211
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.39 E-value=2.2e-05 Score=65.30 Aligned_cols=146 Identities=15% Similarity=0.200 Sum_probs=96.7
Q ss_pred hHHHHHHhh-ccCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----ChhHHHHHHHHHHHccCHHHHHHH
Q 039523 3 PAMKKLWKF-QMIS-----QLELRSLARSAYNRGEYETSKILREAAMALNSL----YPDGWFALGAAALKARDVEKALDV 72 (244)
Q Consensus 3 ~~~~~al~~-~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~ 72 (244)
..|..|++. +|.- ...|..+|..|...|+.+.|...|+++.+..-. -..+|+..|..-++..+++.|.++
T Consensus 368 ~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~l 447 (835)
T KOG2047|consen 368 NTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKL 447 (835)
T ss_pred HHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 346666554 5543 467889999999999999999999999887532 256888888888888889999888
Q ss_pred HHHHHhcCCC------------------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 039523 73 FTRAVQLDPE------------------NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNI 134 (244)
Q Consensus 73 ~~~a~~~~p~------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~ 134 (244)
++++...... +..+|..++......|-++.....|++.+.+.--.|....+.|..+....-+
T Consensus 448 m~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yf 527 (835)
T KOG2047|consen 448 MRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYF 527 (835)
T ss_pred HHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHH
Confidence 8887654211 1234555566666666666666666666666555555555555555555555
Q ss_pred HHHHHHHHHHHhhc
Q 039523 135 GQALEAVQMVLNIT 148 (244)
Q Consensus 135 ~~A~~~~~~al~~~ 148 (244)
+++.+.|++.+.+.
T Consensus 528 eesFk~YErgI~LF 541 (835)
T KOG2047|consen 528 EESFKAYERGISLF 541 (835)
T ss_pred HHHHHHHHcCCccC
Confidence 55555555444443
No 212
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.36 E-value=1.8e-05 Score=67.98 Aligned_cols=136 Identities=7% Similarity=-0.019 Sum_probs=98.3
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 039523 27 YNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIA 106 (244)
Q Consensus 27 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 106 (244)
...+++.+|.....+.++..|+...+...-|.++.+.|+.++|..+++..-...+++...+-.+-.||..+|++++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 35677888888888888888888877777888888888888888777766666677777777778888888888888888
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch-hhHHHHHHHHH
Q 039523 107 FKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR-IDTELLERIVL 163 (244)
Q Consensus 107 ~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~ 163 (244)
|++++..+|+ ......+-.+|.+.++|.+-...--+..+..|+.+ .-|.....+..
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHH
Confidence 8888888887 77777777777777777655444444444556533 23344443333
No 213
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.00018 Score=52.82 Aligned_cols=150 Identities=11% Similarity=0.061 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhH------HHHHHHHHHHc-cCHHHHHHHHHHHHhcCCCc------H
Q 039523 18 ELRSLARSAYNRGEYETSKILREAAMALNSLYPDG------WFALGAAALKA-RDVEKALDVFTRAVQLDPEN------G 84 (244)
Q Consensus 18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~------~~~la~~~~~~-g~~~~A~~~~~~a~~~~p~~------~ 84 (244)
.+...+++| +.++..+|+.++++++++..+-... ...+|.+|... .++++|+.+|+++-...... .
T Consensus 76 ~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN 154 (288)
T KOG1586|consen 76 TYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN 154 (288)
T ss_pred HHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH
Confidence 333444443 3347777777777777776544332 33667777655 77888888888876654322 2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC--chhhH
Q 039523 85 EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQ-------LWENYSHVALDVGNIGQALEAVQMVLNITNN--KRIDT 155 (244)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~ 155 (244)
.++...+......++|.+|+..|++.....-++.. .++..|.|+....+.-.+...+++..+++|. +...-
T Consensus 155 KC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREc 234 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSREC 234 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHH
Confidence 34555666677788888888888887766554432 2445567777778888888888888888887 33445
Q ss_pred HHHHHHHHHhccc
Q 039523 156 ELLERIVLNLEGR 168 (244)
Q Consensus 156 ~~l~~~~~~~~~~ 168 (244)
..+..+...+++.
T Consensus 235 kflk~L~~aieE~ 247 (288)
T KOG1586|consen 235 KFLKDLLDAIEEQ 247 (288)
T ss_pred HHHHHHHHHHhhh
Confidence 5666666666644
No 214
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.30 E-value=6.6e-05 Score=67.95 Aligned_cols=133 Identities=16% Similarity=0.075 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh-----hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc------HH
Q 039523 17 LELRSLARSAYNRGEYETSKILREAAMALNSLYP-----DGWFALGAAALKARDVEKALDVFTRAVQLDPEN------GE 85 (244)
Q Consensus 17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~ 85 (244)
.....+|.++...|++++|...+++++...+... .+...+|.++...|++++|...+.+++...... ..
T Consensus 453 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~ 532 (903)
T PRK04841 453 EFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW 532 (903)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 4455678888999999999999999998655332 355778999999999999999999998753321 24
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 039523 86 AWNIIACLHMIKNKSKEAFIAFKEALKLKRN--------GWQLWENYSHVALDVGNIGQALEAVQMVLNITN 149 (244)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 149 (244)
++..+|.++...|++++|...+++++..... ....+..+|.++...|++++|...+.+++....
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 5677899999999999999999998876221 233456788899999999999999999987643
No 215
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.1e-05 Score=62.02 Aligned_cols=101 Identities=15% Similarity=0.092 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSLY----PDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIA 91 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 91 (244)
+.-+..-|+-|+..++|..|+.+|.++++..-.+ ...|.+.|.+....|+|..|+..+.+++.++|++..+++.-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 4556778999999999999999999999976544 456889999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCC
Q 039523 92 CLHMIKNKSKEAFIAFKEALKLKRN 116 (244)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~a~~~~p~ 116 (244)
.|+..+.++++|...++..+.++..
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999999999999999988777543
No 216
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=3.9e-05 Score=59.21 Aligned_cols=122 Identities=11% Similarity=-0.044 Sum_probs=106.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCc---HHHHHHHHHHHHHcC
Q 039523 23 ARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL-DPEN---GEAWNIIACLHMIKN 98 (244)
Q Consensus 23 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~p~~---~~~~~~l~~~~~~~~ 98 (244)
+-+.+..|++.+|...+.+.++..|.+.-++..--.+++..|+-......+++++.. +|+. ..+.-.++..+...|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 445566789999999999999999999888888888899999999999999999876 6655 445566778899999
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039523 99 KSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMV 144 (244)
Q Consensus 99 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 144 (244)
-|++|.+..+++++++|.+..+....+.++...|++.++.++..+.
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 9999999999999999999999999999999999999998877654
No 217
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.24 E-value=4.9e-05 Score=65.40 Aligned_cols=117 Identities=17% Similarity=0.027 Sum_probs=98.1
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523 2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81 (244)
Q Consensus 2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 81 (244)
+....+.++..|+...+....|..++++|+.++|..+++..-...+++...+..+-.+|...|+.++|..+|++++..+|
T Consensus 29 l~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P 108 (932)
T KOG2053|consen 29 LAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYP 108 (932)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCC
Confidence 44556667779999999999999999999999999888887777888888999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH
Q 039523 82 ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQ 119 (244)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 119 (244)
. -.....+-.+|.+.+.|.+-.+.--+..+..|+.+.
T Consensus 109 ~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y 145 (932)
T KOG2053|consen 109 S-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY 145 (932)
T ss_pred c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 8 777777778888888887665555555556666543
No 218
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=6.6e-06 Score=66.24 Aligned_cols=120 Identities=15% Similarity=0.116 Sum_probs=99.4
Q ss_pred ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhhCCC--------ChhHHHHHHHHHHHccCHHHHHHHHHHHHh-c--
Q 039523 12 QMISQLELRSLARSAYNRGEYETSKILREAA-MALNSL--------YPDGWFALGAAALKARDVEKALDVFTRAVQ-L-- 79 (244)
Q Consensus 12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~-- 79 (244)
..+++.+++..++.++..|++.+|.+.+... +...|. ...+|.++|.++++.|.|.-+..+|.++++ .
T Consensus 236 a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~ 315 (696)
T KOG2471|consen 236 AQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCS 315 (696)
T ss_pred cCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHH
Confidence 4577889999999999999999999887654 222332 234678999999999999999999999985 1
Q ss_pred ------CC---------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 039523 80 ------DP---------ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV 131 (244)
Q Consensus 80 ------~p---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 131 (244)
.| ......++.|..+...|+.-.|.++|.+++.....++..|..++.|+...
T Consensus 316 qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 316 QLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 11 23467899999999999999999999999999999999999999998753
No 219
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.24 E-value=3e-06 Score=43.04 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 039523 17 LELRSLARSAYNRGEYETSKILREAAMALNSL 48 (244)
Q Consensus 17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 48 (244)
.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555553
No 220
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.23 E-value=0.00012 Score=61.20 Aligned_cols=163 Identities=14% Similarity=0.118 Sum_probs=127.6
Q ss_pred chHHHHHHhhcc----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------------------ChhHHHHHHHH
Q 039523 2 MPAMKKLWKFQM----ISQLELRSLARSAYNRGEYETSKILREAAMALNSL------------------YPDGWFALGAA 59 (244)
Q Consensus 2 i~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------------~~~~~~~la~~ 59 (244)
...|+++.+.+= +-+.+|..-|..-.+..+++.|..+.+++...-.. +..+|..++..
T Consensus 407 Rvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl 486 (835)
T KOG2047|consen 407 RVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL 486 (835)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH
Confidence 356788877632 23788999999999999999999999999765321 23578899999
Q ss_pred HHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCHHHHHHHHHHHH-H--cCCH
Q 039523 60 ALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK--RNGWQLWENYSHVAL-D--VGNI 134 (244)
Q Consensus 60 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~la~~~~-~--~~~~ 134 (244)
....|-++.....|++.+.+.-..|....+.|..+....-+++|.+.|++.+.+. |+-.++|...-..+. + -...
T Consensus 487 eEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~kl 566 (835)
T KOG2047|consen 487 EESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKL 566 (835)
T ss_pred HHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCH
Confidence 9999999999999999999988899999999999999999999999999999985 444556654433222 2 2378
Q ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523 135 GQALEAVQMVLNITNNKRIDTELLERIVLNLE 166 (244)
Q Consensus 135 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 166 (244)
+.|...|+++++..|. .....+..+...++
T Consensus 567 EraRdLFEqaL~~Cpp--~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 567 ERARDLFEQALDGCPP--EHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHHHHHHHhcCCH--HHHHHHHHHHHHHH
Confidence 8999999999998883 44455555554444
No 221
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=0.00017 Score=54.82 Aligned_cols=134 Identities=15% Similarity=0.079 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHH-HHHHHHH
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAW-NIIACLH 94 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~-~~l~~~~ 94 (244)
...-+.-+......|++..|...+..++...|++..+...++.++...|+.+.|...+...-....+....- ......+
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 344556677888999999999999999999999999999999999999999999998876543332222111 1111233
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 95 MIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 95 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
.......+. ..+++.+..+|++...-+.+|..+...|+.+.|.+++-..++.+-+
T Consensus 214 ~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 214 EQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred HHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 333333322 2345566779999999999999999999999999999999988654
No 222
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.22 E-value=3e-06 Score=43.03 Aligned_cols=31 Identities=39% Similarity=0.777 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 039523 52 GWFALGAAALKARDVEKALDVFTRAVQLDPE 82 (244)
Q Consensus 52 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 82 (244)
+|+.+|.++...|++++|+.+|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555553
No 223
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.22 E-value=5.2e-06 Score=42.09 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 039523 17 LELRSLARSAYNRGEYETSKILREAAMALNSL 48 (244)
Q Consensus 17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 48 (244)
.+++.+|.+++..|++++|+..|++++.++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34455555555555555555555555555553
No 224
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.21 E-value=4.1e-06 Score=42.47 Aligned_cols=31 Identities=35% Similarity=0.784 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 039523 52 GWFALGAAALKARDVEKALDVFTRAVQLDPE 82 (244)
Q Consensus 52 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 82 (244)
+|+.+|.++...|++++|+++|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555554
No 225
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.21 E-value=6e-05 Score=61.16 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC----------------
Q 039523 18 ELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP---------------- 81 (244)
Q Consensus 18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p---------------- 81 (244)
.-..+-....+..+..+-++..++|++++|+.+.++..||.- ......+|.++++++++...
T Consensus 170 ~Aq~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~ 247 (539)
T PF04184_consen 170 PAQEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFW 247 (539)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchh
Confidence 334555666788999999999999999999999999887752 23346677777777665421
Q ss_pred -------Cc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523 82 -------EN--GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN--GWQLWENYSHVALDVGNIGQALEAVQMVLN 146 (244)
Q Consensus 82 -------~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 146 (244)
.+ ..+...+|.|..+.|+.++|++.++..++..|. +..+..++..++...+.|.++...+.+.=+
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 00 234567899999999999999999999988775 467899999999999999999888888643
No 226
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.20 E-value=0.00052 Score=54.38 Aligned_cols=146 Identities=12% Similarity=0.027 Sum_probs=116.4
Q ss_pred hHHHHHHhhccCCHHHHHHHHHHHHhcCC------------HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHH
Q 039523 3 PAMKKLWKFQMISQLELRSLARSAYNRGE------------YETSKILREAAMALNSLYPDGWFALGAAALKARDVEKAL 70 (244)
Q Consensus 3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 70 (244)
.-|++.++.+|++..+|..+....-..-. .+.-+..+++|++.+|++...+..+-....+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35788899999999999998876554322 456678999999999999999999989999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHH---cCChHHHHHHHHHHHhcCC------------------CCHHHHHHHHHHHH
Q 039523 71 DVFTRAVQLDPENGEAWNIIACLHMI---KNKSKEAFIAFKEALKLKR------------------NGWQLWENYSHVAL 129 (244)
Q Consensus 71 ~~~~~a~~~~p~~~~~~~~l~~~~~~---~~~~~~A~~~~~~a~~~~p------------------~~~~~~~~la~~~~ 129 (244)
+-+++++..+|+++..|..+-..... .-.+......|.++++.-. .-..+...+.....
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999998776554433 3356777777777765411 01345667778888
Q ss_pred HcCCHHHHHHHHHHHHhhc
Q 039523 130 DVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 130 ~~~~~~~A~~~~~~al~~~ 148 (244)
..|-.+.|+..++-.++++
T Consensus 166 ~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 166 QAGYTERAVALWQALLEFN 184 (321)
T ss_pred HCCchHHHHHHHHHHHHHH
Confidence 9999999999999999986
No 227
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.15 E-value=0.0001 Score=61.31 Aligned_cols=121 Identities=20% Similarity=0.116 Sum_probs=100.2
Q ss_pred cCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCChHHHH
Q 039523 29 RGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPE----NGEAWNIIACLHMIKNKSKEAF 104 (244)
Q Consensus 29 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~----~~~~~~~l~~~~~~~~~~~~A~ 104 (244)
....+.|...+.......|+..-..+..|.++...|+.++|++.+++++..... ..-.++.++.++..+++|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 456788999999999999999999999999999999999999999998853322 2346788999999999999999
Q ss_pred HHHHHHHhcCCCC-HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhhcC
Q 039523 105 IAFKEALKLKRNG-WQLWENYSHVALDVGNI-------GQALEAVQMVLNITN 149 (244)
Q Consensus 105 ~~~~~a~~~~p~~-~~~~~~la~~~~~~~~~-------~~A~~~~~~al~~~p 149 (244)
.++.+..+.+.-+ ....+..|.|+...|+. ++|...+.++-....
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 9999999876644 34455668889999998 888888888766543
No 228
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.12 E-value=0.00098 Score=53.21 Aligned_cols=137 Identities=15% Similarity=0.126 Sum_probs=99.6
Q ss_pred cCCHHHHHHHHHHHHh---cCCHHHHHHHHHH-HHhhCCCChhHHHHHHHHHHHc---------cCHHHHHHHHHHHHhc
Q 039523 13 MISQLELRSLARSAYN---RGEYETSKILREA-AMALNSLYPDGWFALGAAALKA---------RDVEKALDVFTRAVQL 79 (244)
Q Consensus 13 p~~~~~~~~la~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~ 79 (244)
++.+.+.+.+|.++-+ .|+.++|+..+.. .....+.+++.+..+|.+|-.. ...++|+..|.++...
T Consensus 176 ~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 176 ANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred hcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 3466777888999988 9999999999999 5556677889999999887542 3478999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH-hc-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEAL-KL-----------KRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~-----------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
+|+.... .|++.++...|+-.+...-.++.. .+ .-.+....-.++.+..-.|++++|...+++++++
T Consensus 256 ~~~~Y~G-IN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 256 EPDYYSG-INAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred Cccccch-HHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 9755433 456666666665333322222211 11 1233445556777888899999999999999999
Q ss_pred cCC
Q 039523 148 TNN 150 (244)
Q Consensus 148 ~p~ 150 (244)
.|.
T Consensus 335 ~~~ 337 (374)
T PF13281_consen 335 KPP 337 (374)
T ss_pred CCc
Confidence 877
No 229
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.11 E-value=0.0014 Score=47.00 Aligned_cols=111 Identities=17% Similarity=0.148 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 039523 52 GWFALGAAALKARDVEKALDVFTRAVQLDPEN---GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVA 128 (244)
Q Consensus 52 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 128 (244)
+...++..+...|++++|+..++.++....+. .-+-.+++.+...+|++++|...+.....-. -.+..-...|+++
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDil 169 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHH
Confidence 34577888999999999999999998654432 3356788999999999999999887532211 1233456679999
Q ss_pred HHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHH
Q 039523 129 LDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLN 164 (244)
Q Consensus 129 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 164 (244)
...|+-++|+..|++++...++ +.....+..-+.+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~~s-~~~~~~lqmKLn~ 204 (207)
T COG2976 170 LAKGDKQEARAAYEKALESDAS-PAAREILQMKLNN 204 (207)
T ss_pred HHcCchHHHHHHHHHHHHccCC-hHHHHHHHhHHHh
Confidence 9999999999999999998744 3344555544433
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.09 E-value=0.0003 Score=48.96 Aligned_cols=114 Identities=18% Similarity=0.039 Sum_probs=74.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 039523 21 SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVE-KALDVFTRAVQLDPENGEAWNIIACLHMIKNK 99 (244)
Q Consensus 21 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 99 (244)
..|......++...++..+++++.+.....-.-... ..|- .....+... ...+...++..+...|+
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~~ 77 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------EEWVEPERERLREL------YLDALERLAEALLEAGD 77 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------STTHHHHHHHHHHH------HHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------cHHHHHHHHHHHHH------HHHHHHHHHHHHHhccC
Confidence 345556677888888888888888754321100000 1111 111112211 12456677888889999
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 100 SKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 100 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
+++|+..+++++..+|.+-.++..+..++...|+...|+..|++..+.
T Consensus 78 ~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 78 YEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998887554
No 231
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.09 E-value=4.1e-06 Score=64.45 Aligned_cols=125 Identities=18% Similarity=0.190 Sum_probs=98.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 039523 20 RSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK 99 (244)
Q Consensus 20 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 99 (244)
...+...+..|+++.|++.|..++.++|.....+...+.+++++++...|+..|..++.++|+....+-..|.+...+|+
T Consensus 118 k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 118 KVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred HHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence 34456677889999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523 100 SKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVL 145 (244)
Q Consensus 100 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 145 (244)
|++|...+..+.+++-+. .+-..+-.+.-..+..++-...+++..
T Consensus 198 ~e~aa~dl~~a~kld~dE-~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 198 WEEAAHDLALACKLDYDE-ANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred hHHHHHHHHHHHhccccH-HHHHHHHHhccchhhhhhchhHHHHHH
Confidence 999999999998886432 222333344444444444444444443
No 232
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.08 E-value=8.2e-05 Score=61.89 Aligned_cols=112 Identities=21% Similarity=0.115 Sum_probs=92.4
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----ChhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039523 2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSL----YPDGWFALGAAALKARDVEKALDVFTRAV 77 (244)
Q Consensus 2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 77 (244)
.++++...+..|+.+-.++..|+.+...|+.++|+..+++++..... ..-.++.+|.++....+|++|.+++.+..
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 35667777789999999999999999999999999999998853332 23467899999999999999999999999
Q ss_pred hcCCCcHHH-HHHHHHHHHHcCCh-------HHHHHHHHHHHhc
Q 039523 78 QLDPENGEA-WNIIACLHMIKNKS-------KEAFIAFKEALKL 113 (244)
Q Consensus 78 ~~~p~~~~~-~~~l~~~~~~~~~~-------~~A~~~~~~a~~~ 113 (244)
+.+.-+... .+..|.|+...|+. ++|...+.++-..
T Consensus 333 ~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 333 KESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 987765544 45668889999999 7888888776544
No 233
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=2.9e-05 Score=59.72 Aligned_cols=98 Identities=15% Similarity=0.212 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 039523 51 DGWFALGAAALKARDVEKALDVFTRAVQLDPEN----GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSH 126 (244)
Q Consensus 51 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~ 126 (244)
.-+-.-|.-|++.++|..|...|.+.++..-.+ ...|.+.+.+....|+|..|+.-+.+++..+|.+..+++.-|.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 345667889999999999999999999875433 4578899999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhc
Q 039523 127 VALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 127 ~~~~~~~~~~A~~~~~~al~~~ 148 (244)
|+..+.++.+|....+..+.++
T Consensus 162 c~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhhhh
Confidence 9999999888877777666554
No 234
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.07 E-value=0.00032 Score=48.81 Aligned_cols=63 Identities=29% Similarity=0.399 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 039523 50 PDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALK 112 (244)
Q Consensus 50 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 112 (244)
..+...++..+...|++++|+..+.+++..+|.+-.+|..+..++...|+...|+..|++...
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 346678888899999999999999999999999999999999999999999999999987654
No 235
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.00045 Score=50.80 Aligned_cols=134 Identities=12% Similarity=0.083 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----CCChh-HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHH----
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALN-----SLYPD-GWFALGAAALKARDVEKALDVFTRAVQLDPENGE---- 85 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~---- 85 (244)
.+.+..-|+.|...++|+.|-..|.++-... .++.. .+...+. +++.++..+|+.++++++.+.-+-..
T Consensus 34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~-cykk~~~~eAv~cL~~aieIyt~~Grf~~a 112 (288)
T KOG1586|consen 34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAAN-CYKKVDPEEAVNCLEKAIEIYTDMGRFTMA 112 (288)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH-HhhccChHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4556667778888888888888888886542 22233 3444444 44566999999999999988654433
Q ss_pred --HHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 86 --AWNIIACLHMIK-NKSKEAFIAFKEALKLKRNG------WQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 86 --~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
.+..+|.+|... .++++|+.+|+++-...... -.++...+......++|.+|+..|++..+..-+
T Consensus 113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344778887654 88999999999987764322 345666777788899999999999999876554
No 236
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=98.01 E-value=0.0011 Score=53.36 Aligned_cols=145 Identities=14% Similarity=-0.041 Sum_probs=112.4
Q ss_pred HHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------------C------------CCCh---hHHHHH
Q 039523 6 KKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMAL--------------N------------SLYP---DGWFAL 56 (244)
Q Consensus 6 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------------~------------p~~~---~~~~~l 56 (244)
-..+..+|.+.+.+..++.++..+|+...|.+.+++++-. + ++|- .+.+..
T Consensus 30 ~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~ 109 (360)
T PF04910_consen 30 INLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRY 109 (360)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHH
Confidence 3456779999999999999999999999999999998532 1 1121 245667
Q ss_pred HHHHHHccCHHHHHHHHHHHHhcCCC-cHHHH-HHHHHHHHHcCChHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHH
Q 039523 57 GAAALKARDVEKALDVFTRAVQLDPE-NGEAW-NIIACLHMIKNKSKEAFIAFKEALKLKR-----NGWQLWENYSHVAL 129 (244)
Q Consensus 57 a~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~-~~l~~~~~~~~~~~~A~~~~~~a~~~~p-----~~~~~~~~la~~~~ 129 (244)
...+.+.|.+..|.++++-.+.++|. +|-.. +.+-....+.++++--++.++....... .-+..-+..+.++.
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~ 189 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYF 189 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHH
Confidence 77888999999999999999999998 76544 4444556777888888887776554211 12356677888888
Q ss_pred HcCCH---------------HHHHHHHHHHHhhcCC
Q 039523 130 DVGNI---------------GQALEAVQMVLNITNN 150 (244)
Q Consensus 130 ~~~~~---------------~~A~~~~~~al~~~p~ 150 (244)
..++- +.|...+.+|+...|.
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 190 RLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 88888 8999999999999886
No 237
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.98 E-value=0.00012 Score=57.23 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh-----hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH------
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYP-----DGWFALGAAALKARDVEKALDVFTRAVQLDPENG------ 84 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~------ 84 (244)
.+++.++++.+...-++.+++.+.+..+......+ .+...+|..+.-.+.++++++.|+++++...++.
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 46788999999999999999998888877643332 4667789999999999999999999998754332
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523 85 EAWNIIACLHMIKNKSKEAFIAFKEALKLKRN----G------WQLWENYSHVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~----~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
.++..+|..+....++++|.-+..++..+..+ + ..+++.++..+..+|+...|.++.+++.++.
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 47889999999999999999999998877432 2 3567888999999999999999999987764
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00072 Score=51.53 Aligned_cols=136 Identities=15% Similarity=0.066 Sum_probs=96.7
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPD-GWFALGAAALKARDVEKALDVFTRAVQL 79 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~ 79 (244)
|.+.|..++...|++..+...++.++...|+.+.|...+...-........ ........+.+.....+.. .+.+.+..
T Consensus 153 a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~-~l~~~~aa 231 (304)
T COG3118 153 AAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ-DLQRRLAA 231 (304)
T ss_pred HHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHh
Confidence 346788999999999999999999999999999998887765333332211 1111123333333333322 35666778
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHH
Q 039523 80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN--GWQLWENYSHVALDVGNIGQA 137 (244)
Q Consensus 80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~~~~~~A 137 (244)
+|++....+.++..+...|+.++|.+.+-..++.+.. +..+...+-.++...|.-+..
T Consensus 232 dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 232 DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 9999999999999999999999999999888887543 455566666666666644333
No 239
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.89 E-value=6.2e-06 Score=63.49 Aligned_cols=94 Identities=16% Similarity=0.242 Sum_probs=86.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 039523 57 GAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQ 136 (244)
Q Consensus 57 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~ 136 (244)
+.-.+..|.+++|++.|..++.++|.....+...+.++.++++...|+.-+..++.++|+...-+-.-+.....+|++++
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 44456678999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred HHHHHHHHHhhcCC
Q 039523 137 ALEAVQMVLNITNN 150 (244)
Q Consensus 137 A~~~~~~al~~~p~ 150 (244)
|...+..+.+++-+
T Consensus 201 aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 201 AAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHhcccc
Confidence 99999999887644
No 240
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.002 Score=47.86 Aligned_cols=146 Identities=20% Similarity=0.084 Sum_probs=69.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhC-----CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc------HHHHHHHH
Q 039523 23 ARSAYNRGEYETSKILREAAMALN-----SLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN------GEAWNIIA 91 (244)
Q Consensus 23 a~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~l~ 91 (244)
|........+.++..+++++.... |+....-...+--.....+.++|++.|++++.+--.+ .+.+...+
T Consensus 78 amLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~s 157 (308)
T KOG1585|consen 78 AMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCS 157 (308)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 333334444555555555554432 2222222222333344445555555555555432211 12333445
Q ss_pred HHHHHcCChHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC-chhhHHHHHHHHHH
Q 039523 92 CLHMIKNKSKEAFIAFKEALKL------KRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN-KRIDTELLERIVLN 164 (244)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 164 (244)
.++.+..++.+|-..+.+-... .++....+.....++....+|..|..+++..-.+..- .+.+-..++.+++.
T Consensus 158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 5556666666655554432211 2222333444455556666777777777765544211 34455666666666
Q ss_pred hccc
Q 039523 165 LEGR 168 (244)
Q Consensus 165 ~~~~ 168 (244)
+.+.
T Consensus 238 yd~g 241 (308)
T KOG1585|consen 238 YDEG 241 (308)
T ss_pred hccC
Confidence 6643
No 241
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.87 E-value=0.00021 Score=57.99 Aligned_cols=141 Identities=13% Similarity=0.057 Sum_probs=110.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHH-hcCCC--------cHHHHHH
Q 039523 19 LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAV-QLDPE--------NGEAWNI 89 (244)
Q Consensus 19 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~-~~~p~--------~~~~~~~ 89 (244)
....-..+.+..+...+....+.+.....+.+.+....+..++-.|++.+|.+.+...- ...|. ..-.|.+
T Consensus 209 ~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NN 288 (696)
T KOG2471|consen 209 QLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNN 288 (696)
T ss_pred hHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecC
Confidence 34445566777777778777888888888889999999999999999999999876542 22232 2235789
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhc---------CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523 90 IACLHMIKNKSKEAFIAFKEALKL---------KR---------NGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK 151 (244)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~a~~~---------~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 151 (244)
+|.+++..|.|.-+..+|.++++- .| ....++++.|..+...|+.-.|.++|.++....-.+
T Consensus 289 lGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n 368 (696)
T KOG2471|consen 289 LGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN 368 (696)
T ss_pred cceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999961 11 346789999999999999999999999999876665
Q ss_pred hhhHHHHH
Q 039523 152 RIDTELLE 159 (244)
Q Consensus 152 ~~~~~~l~ 159 (244)
+.-|-.+.
T Consensus 369 PrlWLRlA 376 (696)
T KOG2471|consen 369 PRLWLRLA 376 (696)
T ss_pred cHHHHHHH
Confidence 55554444
No 242
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.0019 Score=48.01 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh------hHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCcH
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYP------DGWFALGAAALKARDVEKALDVFTRAVQL-----DPENG 84 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p~~~ 84 (244)
+..+..-+..|...++|++|..++.++.+-..++. .++...|.+......+.++..+++++... .|+..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 45566777888889999999999999997655442 35567777788889999999999999875 34444
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523 85 EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG------WQLWENYSHVALDVGNIGQALEAVQMVL 145 (244)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al 145 (244)
..-...+-=..+..+.++|+..|++++.+-..+ ...+-..++++.....+.+|-..+.+-.
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~ 177 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEG 177 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhh
Confidence 444445555667788999999999998774332 3456667888999999999877766543
No 243
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.83 E-value=0.0063 Score=48.40 Aligned_cols=127 Identities=20% Similarity=0.103 Sum_probs=83.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHH-----------------------------
Q 039523 25 SAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTR----------------------------- 75 (244)
Q Consensus 25 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~----------------------------- 75 (244)
.....|..+.|+.+-+++....|.-+.++...-......|+++.|+++.+.
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 334567777777777777777777777766666666677777777776652
Q ss_pred ------------HHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----------------------------
Q 039523 76 ------------AVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK----------------------------- 114 (244)
Q Consensus 76 ------------a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----------------------------- 114 (244)
+.++.|+...+-..-+..+++.|+..++-..++.+.+..
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~ 322 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLE 322 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 233335555555556666777777777766666665554
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523 115 ---RNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK 151 (244)
Q Consensus 115 ---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 151 (244)
|++.+.....+......|++..|..--+.+.+..|..
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre 362 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE 362 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh
Confidence 4455555666666677777777777777777777763
No 244
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.00063 Score=55.34 Aligned_cols=91 Identities=19% Similarity=0.233 Sum_probs=78.6
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhc
Q 039523 35 SKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK-SKEAFIAFKEALKL 113 (244)
Q Consensus 35 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~ 113 (244)
-...|++++...+.+...|........+.+.+.+-...|.+++..+|++++.|...|...+.-+. .+.|...+.++++.
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 35578888888888999999998888888889999999999999999999999999888877776 88999999999999
Q ss_pred CCCCHHHHHHHH
Q 039523 114 KRNGWQLWENYS 125 (244)
Q Consensus 114 ~p~~~~~~~~la 125 (244)
+|+++..|...-
T Consensus 170 npdsp~Lw~eyf 181 (568)
T KOG2396|consen 170 NPDSPKLWKEYF 181 (568)
T ss_pred CCCChHHHHHHH
Confidence 999988776543
No 245
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.80 E-value=5.8e-05 Score=38.14 Aligned_cols=31 Identities=26% Similarity=0.277 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 039523 17 LELRSLARSAYNRGEYETSKILREAAMALNS 47 (244)
Q Consensus 17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 47 (244)
.+|+.+|.++...|++++|+.+|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3455555555555555555555555555555
No 246
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.77 E-value=0.0033 Score=50.45 Aligned_cols=139 Identities=17% Similarity=0.195 Sum_probs=108.7
Q ss_pred ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC----CChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC-C-C---
Q 039523 12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNS----LYPDGWFALGAAALKARDVEKALDVFTRAVQLD-P-E--- 82 (244)
Q Consensus 12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-p-~--- 82 (244)
.......|...+......|.++.|...+.++...++ ..+.+....+......|+..+|+..++..+... . .
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 345677899999999999999999999999988652 246778888999999999999999998887711 0 0
Q ss_pred -----------------------------cHHHHHHHHHHHHHc------CChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 039523 83 -----------------------------NGEAWNIIACLHMIK------NKSKEAFIAFKEALKLKRNGWQLWENYSHV 127 (244)
Q Consensus 83 -----------------------------~~~~~~~l~~~~~~~------~~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 127 (244)
...++..+|...... +..+++...|.++++..|+...+|+.+|..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 124566677777777 888999999999999999999999999888
Q ss_pred HHHcCC-----------------HHHHHHHHHHHHhhcCC
Q 039523 128 ALDVGN-----------------IGQALEAVQMVLNITNN 150 (244)
Q Consensus 128 ~~~~~~-----------------~~~A~~~~~~al~~~p~ 150 (244)
+...=+ ...|+.+|-+++...++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 302 NDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 765421 12467777777777766
No 247
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.74 E-value=0.002 Score=46.16 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=83.9
Q ss_pred HHHHhhccCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 039523 6 KKLWKFQMISQL---ELRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQL 79 (244)
Q Consensus 6 ~~al~~~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 79 (244)
++....+|.+.. +-..+|..+...+++++|+..++.++....+. .-+-..+|.+....|.+++|+..+......
T Consensus 76 ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~ 155 (207)
T COG2976 76 EKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE 155 (207)
T ss_pred HHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc
Confidence 344444545433 34678899999999999999999998665433 235678999999999999999988764321
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523 80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG 117 (244)
Q Consensus 80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 117 (244)
+ -.+..-...|.++...|+-++|+..|++++...++.
T Consensus 156 ~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 156 S-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred c-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 1 122345567999999999999999999999997554
No 248
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.72 E-value=0.00011 Score=37.03 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 039523 120 LWENYSHVALDVGNIGQALEAVQMVLNITN 149 (244)
Q Consensus 120 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p 149 (244)
+|+.+|.++..+|++++|..+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566666666666666666666665555
No 249
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.0009 Score=57.81 Aligned_cols=81 Identities=11% Similarity=0.103 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 039523 52 GWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV 131 (244)
Q Consensus 52 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 131 (244)
.|...|......|+.+.|+.+|..+- -|+.+..+.+.+|+.++|-...+ ...+..+.+.+|+.|...
T Consensus 914 L~~WWgqYlES~GemdaAl~~Y~~A~--------D~fs~VrI~C~qGk~~kAa~iA~-----esgd~AAcYhlaR~YEn~ 980 (1416)
T KOG3617|consen 914 LYSWWGQYLESVGEMDAALSFYSSAK--------DYFSMVRIKCIQGKTDKAARIAE-----ESGDKAACYHLARMYEND 980 (1416)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHhh--------hhhhheeeEeeccCchHHHHHHH-----hcccHHHHHHHHHHhhhh
Confidence 33444444444444444444444332 13333344444444444433322 245667888999999999
Q ss_pred CCHHHHHHHHHHHH
Q 039523 132 GNIGQALEAVQMVL 145 (244)
Q Consensus 132 ~~~~~A~~~~~~al 145 (244)
|++.+|+.+|.+|-
T Consensus 981 g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 981 GDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877663
No 250
>PRK10941 hypothetical protein; Provisional
Probab=97.61 E-value=0.0016 Score=49.94 Aligned_cols=69 Identities=16% Similarity=0.019 Sum_probs=41.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHH
Q 039523 54 FALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWE 122 (244)
Q Consensus 54 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 122 (244)
.++-.++.+.++++.|+.+.+..+...|+++.-+...|.++.++|.+..|..-++..++..|+++.+-.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 345555566666666666666666666666666666666666666666666666666666665554433
No 251
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.59 E-value=0.0016 Score=41.17 Aligned_cols=44 Identities=14% Similarity=0.016 Sum_probs=21.8
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 039523 4 AMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNS 47 (244)
Q Consensus 4 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 47 (244)
-+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.++
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 34445555555555555555555555555555555555555544
No 252
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.58 E-value=0.0085 Score=51.26 Aligned_cols=139 Identities=18% Similarity=0.109 Sum_probs=107.7
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhh-----CCCChhHHHHHHHHHHHcc-----CHHH
Q 039523 4 AMKKLWKFQMISQLELRSLARSAYNR-----GEYETSKILREAAMAL-----NSLYPDGWFALGAAALKAR-----DVEK 68 (244)
Q Consensus 4 ~~~~al~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-----~~~~ 68 (244)
+|+.+.+ -.+..+...+|.++..- .+.+.|+.+++.+... ...++.+.+.+|.+|.+.. ++..
T Consensus 234 ~~~~~a~--~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~ 311 (552)
T KOG1550|consen 234 YYREAAK--LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEK 311 (552)
T ss_pred HHHHHHh--hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHH
Confidence 3444433 35778888888888764 7899999999999771 1125667889999999853 6788
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHH
Q 039523 69 ALDVFTRAVQLDPENGEAWNIIACLHMIKN---KSKEAFIAFKEALKLKRNGWQLWENYSHVALD----VGNIGQALEAV 141 (244)
Q Consensus 69 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~ 141 (244)
|..+|.++.+.. ++++.+.+|.++.... ++..|..+|..|.... +..+.+.++.|+.. ..+...|..++
T Consensus 312 A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~ 387 (552)
T KOG1550|consen 312 ALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGVERNLELAFAYY 387 (552)
T ss_pred HHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHH
Confidence 999999988765 5677788888887665 5789999999887764 67788889988865 34788999999
Q ss_pred HHHHhhc
Q 039523 142 QMVLNIT 148 (244)
Q Consensus 142 ~~al~~~ 148 (244)
+++-+..
T Consensus 388 k~aA~~g 394 (552)
T KOG1550|consen 388 KKAAEKG 394 (552)
T ss_pred HHHHHcc
Confidence 9998887
No 253
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.56 E-value=0.011 Score=47.00 Aligned_cols=141 Identities=13% Similarity=0.061 Sum_probs=113.3
Q ss_pred hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHH-HHHHHHHHhcCC
Q 039523 3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKA-LDVFTRAVQLDP 81 (244)
Q Consensus 3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~~~p 81 (244)
..-.+++++.|+...+-..-+..++..|+..++-..++.+-+..| ++.++. ..++.+.|+.... .+-..+.-.+.|
T Consensus 250 ~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP-HP~ia~--lY~~ar~gdta~dRlkRa~~L~slk~ 326 (531)
T COG3898 250 DDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP-HPDIAL--LYVRARSGDTALDRLKRAKKLESLKP 326 (531)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC-ChHHHH--HHHHhcCCCcHHHHHHHHHHHHhcCc
Confidence 445677888999999999999999999999999999999999999 665543 3344555654433 233445556789
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh
Q 039523 82 ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV-GNIGQALEAVQMVLNI 147 (244)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~ 147 (244)
++.......+...+..|++..|..--+.+....|.. .++..++.+.... |+-.+....+.++++-
T Consensus 327 nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 327 NNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999975 4566777777655 9999999999999974
No 254
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.56 E-value=0.0022 Score=52.38 Aligned_cols=94 Identities=15% Similarity=0.089 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 039523 67 EKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGN-IGQALEAVQMVL 145 (244)
Q Consensus 67 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al 145 (244)
..-...|+.++...+.++..|........+.+.+.+-...|.+++..+|+++.+|...|.-.+..+. .+.|...+.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 3446678899999999999999999988888889999999999999999999999999998887775 999999999999
Q ss_pred hhcCCchhhHHHHHH
Q 039523 146 NITNNKRIDTELLER 160 (244)
Q Consensus 146 ~~~p~~~~~~~~l~~ 160 (244)
+.+|+.+.-+...-+
T Consensus 168 R~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFR 182 (568)
T ss_pred hcCCCChHHHHHHHH
Confidence 999997755544433
No 255
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.55 E-value=0.0044 Score=43.24 Aligned_cols=110 Identities=15% Similarity=0.097 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 039523 52 GWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV 131 (244)
Q Consensus 52 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 131 (244)
.+..+..+-...++.+++...+...--+.|..+..-..-|.++...|+|.+|+..++.+....|..+.+--.++.|+..+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 44555566666777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 039523 132 GNIGQALEAVQMVLNITNNKRIDTELLERIVL 163 (244)
Q Consensus 132 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 163 (244)
|+..== .+-.++++..++ +.....+..+.+
T Consensus 92 ~D~~Wr-~~A~evle~~~d-~~a~~Lv~~Ll~ 121 (160)
T PF09613_consen 92 GDPSWR-RYADEVLESGAD-PDARALVRALLA 121 (160)
T ss_pred CChHHH-HHHHHHHhcCCC-hHHHHHHHHHHH
Confidence 765532 222334444332 334444444443
No 256
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.55 E-value=0.0058 Score=48.93 Aligned_cols=118 Identities=15% Similarity=0.098 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCChhHHHHHHHHHHH---ccCHHHHHHHHHH-HHhcCCCcHHH
Q 039523 15 SQLELRSLARSAYNRGEYETSKILREAAMAL----NSLYPDGWFALGAAALK---ARDVEKALDVFTR-AVQLDPENGEA 86 (244)
Q Consensus 15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-a~~~~p~~~~~ 86 (244)
++.+...+=..|....+|+.-+...+..-.. .++.+.+.+.+|.++-+ .|+.++|+..+.. .....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4566677777888889999888888877666 45667778888888888 8999999999888 55566778888
Q ss_pred HHHHHHHHHH---------cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 039523 87 WNIIACLHMI---------KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGN 133 (244)
Q Consensus 87 ~~~l~~~~~~---------~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~ 133 (244)
+..+|.+|.. ....++|+..|.++.+.+|+. ..=.|++.++...|.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCC
Confidence 8888888742 223678899999999988643 344556666666664
No 257
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.54 E-value=0.0095 Score=47.29 Aligned_cols=112 Identities=13% Similarity=0.104 Sum_probs=91.9
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHccC------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHH
Q 039523 37 ILREAAMALNSLYPDGWFALGAAALKARD------------VEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAF 104 (244)
Q Consensus 37 ~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 104 (244)
..+++.++.+|.+..+|..++......-. .+..+..|++|++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45788899999999999998877665533 456778899999999999999988888888888999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhc
Q 039523 105 IAFKEALKLKRNGWQLWENYSHVALD---VGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 105 ~~~~~a~~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~ 148 (244)
+-+++++..+|++..+|..+-..... .-.+......|.++++.-
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L 132 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRAL 132 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 99999999999999998877665544 235777888888877653
No 258
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.54 E-value=0.0039 Score=43.48 Aligned_cols=86 Identities=16% Similarity=0.096 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM 95 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 95 (244)
...+..+...-...++.+++...+...-.+.|..+.+-..-|.+++..|+|.+|+..++.+....|..+.+--.++.|+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 45677778888889999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HcCChH
Q 039523 96 IKNKSK 101 (244)
Q Consensus 96 ~~~~~~ 101 (244)
.+|+.+
T Consensus 90 ~~~D~~ 95 (160)
T PF09613_consen 90 ALGDPS 95 (160)
T ss_pred HcCChH
Confidence 888753
No 259
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.53 E-value=0.0031 Score=40.96 Aligned_cols=103 Identities=13% Similarity=0.103 Sum_probs=61.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCChhHH---HHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 039523 22 LARSAYNRGEYETSKILREAAMALNSLYPDGW---FALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKN 98 (244)
Q Consensus 22 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 98 (244)
+|..++..|++-+|++..+..+...+++...| ..-|.++. ..+...+..+....+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~------------~lA~~ten~d~k~~yL--------- 60 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFY------------KLAKKTENPDVKFRYL--------- 60 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHH------------HHHHhccCchHHHHHH---------
Confidence 46778888999999999999888887776543 23333332 2222222222222222
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 99 KSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 99 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
-.+++++.++..+.|..+..++.+|.-+-....|+++..--++++.+
T Consensus 61 --l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 61 --LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred --HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 24566666666666666666666666655555666666666666554
No 260
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.52 E-value=0.0006 Score=52.26 Aligned_cols=75 Identities=23% Similarity=0.231 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 039523 18 ELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIAC 92 (244)
Q Consensus 18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 92 (244)
.-...|.-....|+.++|...|+.++.++|.++.++..+|......++.-+|-.+|-+++.++|.+..++.+.+.
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 344556667788999999999999999999999999999999999999999999999999999999888777654
No 261
>PRK10941 hypothetical protein; Provisional
Probab=97.51 E-value=0.0029 Score=48.54 Aligned_cols=82 Identities=10% Similarity=0.073 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHh
Q 039523 86 AWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNL 165 (244)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 165 (244)
...++-.++...++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|..-++..++..|+++ ....+......+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp-~a~~ik~ql~~l 261 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP-ISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch-hHHHHHHHHHHH
Confidence 4556777899999999999999999999999999999999999999999999999999999999977 455566655555
Q ss_pred ccc
Q 039523 166 EGR 168 (244)
Q Consensus 166 ~~~ 168 (244)
+..
T Consensus 262 ~~~ 264 (269)
T PRK10941 262 EQK 264 (269)
T ss_pred hhc
Confidence 543
No 262
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.49 E-value=0.00027 Score=35.23 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 039523 18 ELRSLARSAYNRGEYETSKILREAAMALNSL 48 (244)
Q Consensus 18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 48 (244)
+++.+|.++...|++++|+..|++.+...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3455555555555555555555555555553
No 263
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.49 E-value=0.012 Score=48.67 Aligned_cols=139 Identities=15% Similarity=0.199 Sum_probs=102.0
Q ss_pred HHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHH
Q 039523 6 KKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGE 85 (244)
Q Consensus 6 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 85 (244)
++-++.+|.+..+|..|-+.+..+ .+++....|++.....|..+.+|.......+..++|+.-..+|.+++..-= +.+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHh
Confidence 667888999999999999988877 999999999999999999999999999999999999999999999886432 244
Q ss_pred HHHH-HHHHHHHcCChHHHHHHHHHH-------HhcCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHh
Q 039523 86 AWNI-IACLHMIKNKSKEAFIAFKEA-------LKLKRNGWQLWENYSHVAL---------DVGNIGQALEAVQMVLN 146 (244)
Q Consensus 86 ~~~~-l~~~~~~~~~~~~A~~~~~~a-------~~~~p~~~~~~~~la~~~~---------~~~~~~~A~~~~~~al~ 146 (244)
.|.. +..+....|+...+....-++ +..++.+..+|...+..+. ...+.+.-+..|++++.
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 5533 334444445544433332222 2346666777777666543 22355566777888774
No 264
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.47 E-value=0.00095 Score=55.49 Aligned_cols=107 Identities=21% Similarity=0.138 Sum_probs=91.4
Q ss_pred HHHHHHccCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 039523 57 GAAALKARDVEKALDVFTRAVQLDPENG-EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIG 135 (244)
Q Consensus 57 a~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~ 135 (244)
|....-.|+...|..++..++...|... ....+++.++.+-|-..+|...+.+++.+....+...+.+|..+..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 3334457999999999999999888543 357789999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 039523 136 QALEAVQMVLNITNNKRIDTELLERIVL 163 (244)
Q Consensus 136 ~A~~~~~~al~~~p~~~~~~~~l~~~~~ 163 (244)
.|+++++.|++.+|+.+....-+..+.-
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999998776666655443
No 265
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.47 E-value=0.0011 Score=37.05 Aligned_cols=47 Identities=17% Similarity=0.131 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHh
Q 039523 119 QLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNL 165 (244)
Q Consensus 119 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 165 (244)
++++.+|..+.+.|+|++|..+.+.++++.|++.........+...+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 35566777777777777777777777777777665554444444433
No 266
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.43 E-value=0.005 Score=38.89 Aligned_cols=65 Identities=29% Similarity=0.246 Sum_probs=36.3
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCh
Q 039523 36 KILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN--GEAWNIIACLHMIKNKS 100 (244)
Q Consensus 36 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~~~~ 100 (244)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+.-.+-.++...|.-
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 445566666677776777777777777777777777776666666543 33333444444444443
No 267
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.42 E-value=0.038 Score=43.23 Aligned_cols=132 Identities=23% Similarity=0.139 Sum_probs=76.2
Q ss_pred ccCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCC-hhHHHHHHHHHHHcc-------CHHHHHHHHHHHHhc
Q 039523 12 QMISQLELRSLARSAYN----RGEYETSKILREAAMALNSLY-PDGWFALGAAALKAR-------DVEKALDVFTRAVQL 79 (244)
Q Consensus 12 ~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~a~~~ 79 (244)
+...+.+.+.+|..+.. ..+..+|..+|+++....-.. ..+.+.++.++..-+ +...|...|.++...
T Consensus 105 ~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~ 184 (292)
T COG0790 105 ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL 184 (292)
T ss_pred hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh
Confidence 34556666667777665 346777777777776664323 233555565555431 222566666666554
Q ss_pred CCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---------------CHHHHHHH
Q 039523 80 DPENGEAWNIIACLHMI----KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG---------------NIGQALEA 140 (244)
Q Consensus 80 ~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~---------------~~~~A~~~ 140 (244)
. ++.+.+.+|.+|.. ..++.+|...|.++.+... ....+.++ ++...| +...|...
T Consensus 185 ~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~ 259 (292)
T COG0790 185 G--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEW 259 (292)
T ss_pred c--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHH
Confidence 4 55666666666543 2356677777777766654 56666666 444444 55555666
Q ss_pred HHHHHhhc
Q 039523 141 VQMVLNIT 148 (244)
Q Consensus 141 ~~~al~~~ 148 (244)
+.++....
T Consensus 260 ~~~~~~~~ 267 (292)
T COG0790 260 LQKACELG 267 (292)
T ss_pred HHHHHHcC
Confidence 55555443
No 268
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.42 E-value=0.00037 Score=35.73 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 039523 19 LRSLARSAYNRGEYETSKILREAAM 43 (244)
Q Consensus 19 ~~~la~~~~~~~~~~~A~~~~~~al 43 (244)
+..+|.+|...|++++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666666666666666666643
No 269
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.34 E-value=0.00045 Score=35.37 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=12.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHH
Q 039523 53 WFALGAAALKARDVEKALDVFTRA 76 (244)
Q Consensus 53 ~~~la~~~~~~g~~~~A~~~~~~a 76 (244)
+..||.++...|++++|+++|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555555555555555553
No 270
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.31 E-value=0.0014 Score=50.41 Aligned_cols=72 Identities=21% Similarity=0.249 Sum_probs=61.4
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 039523 55 ALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSH 126 (244)
Q Consensus 55 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~ 126 (244)
..|.-..+.|+.++|...|+.++++.|++++++..+|......++.-+|-.+|-+++.+.|.+..++.+.++
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 445556678999999999999999999999999999999988899999999999999999988877766543
No 271
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.30 E-value=0.0017 Score=36.32 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=10.6
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCcH
Q 039523 56 LGAAALKARDVEKALDVFTRAVQLDPENG 84 (244)
Q Consensus 56 la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 84 (244)
+|..+.+.|+|++|.++.+.+++++|++.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 33333333334333333333333333333
No 272
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.009 Score=44.95 Aligned_cols=163 Identities=10% Similarity=0.066 Sum_probs=93.3
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHH-HHHHHHHHHHhc
Q 039523 2 MPAMKKLWKFQMISQLELRSLARSAYN-RGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVE-KALDVFTRAVQL 79 (244)
Q Consensus 2 i~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~ 79 (244)
+.+-+.++.++|.+-.+|...-.+... ..+..+-++++.+.+..+|.|-.+|...-.+....|+.. .-++....++..
T Consensus 63 l~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~ 142 (318)
T KOG0530|consen 63 LQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDD 142 (318)
T ss_pred HHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhc
Confidence 344455555566665555544444433 234555666666666667777666666666666666665 556666666666
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHhhcCCchh
Q 039523 80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD-VG-----NIGQALEAVQMVLNITNNKRI 153 (244)
Q Consensus 80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~-~~-----~~~~A~~~~~~al~~~p~~~~ 153 (244)
+..+..+|-..-.+...-+.++.-+.+..+.++.+-.+-.+|...-.+... .| ..+.-+.+..+.+...|++..
T Consensus 143 DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeS 222 (318)
T KOG0530|consen 143 DAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNES 222 (318)
T ss_pred cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCcc
Confidence 666666666666666666666666666666666654433333322111111 11 123334566666777777666
Q ss_pred hHHHHHHHHHH
Q 039523 154 DTELLERIVLN 164 (244)
Q Consensus 154 ~~~~l~~~~~~ 164 (244)
.+..|.-+...
T Consensus 223 aWnYL~G~l~~ 233 (318)
T KOG0530|consen 223 AWNYLKGLLEL 233 (318)
T ss_pred HHHHHHHHHHh
Confidence 66666655554
No 273
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.27 E-value=0.0035 Score=51.14 Aligned_cols=125 Identities=10% Similarity=-0.082 Sum_probs=101.2
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHH
Q 039523 26 AYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFI 105 (244)
Q Consensus 26 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 105 (244)
.+..|+...|......++...|..|......+.+....|.|+.+...+.-+-..-.....+.-.+-......|++++|..
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 35678899999999999999999998888889999999999999988876655444444444444566778899999998
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 106 AFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 106 ~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
..+-.+.-.-.++++....+.....+|-++++...|++.+.++|.
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 888888777777888777777888888999999999999998876
No 274
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.22 E-value=0.0063 Score=39.51 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=23.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCcHHHH
Q 039523 56 LGAAALKARDVEKALDVFTRAVQLDPENGEAW 87 (244)
Q Consensus 56 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 87 (244)
.|.-++..|++-+|++..+..+...+++...|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~ 33 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSW 33 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchH
Confidence 35667788888888888888888777666443
No 275
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.21 E-value=0.0053 Score=51.28 Aligned_cols=114 Identities=11% Similarity=-0.025 Sum_probs=93.0
Q ss_pred HHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh--hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc
Q 039523 6 KKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYP--DGWFALGAAALKARDVEKALDVFTRAVQLDPEN 83 (244)
Q Consensus 6 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 83 (244)
..+++.+|.++..+..-+.....+|+..+|..++..++...|... -++..+|.++.+.|...+|--.+..++...|..
T Consensus 203 ~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~ 282 (886)
T KOG4507|consen 203 HEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFF 282 (886)
T ss_pred HHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccc
Confidence 345566676666665555555668999999999999999877653 367789999999999999999998888888877
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH
Q 039523 84 GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQ 119 (244)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 119 (244)
..-++.++.++..+|.+...+.+|..+.+..|....
T Consensus 283 t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q 318 (886)
T KOG4507|consen 283 TSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ 318 (886)
T ss_pred cccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence 667899999999999999999999999998886533
No 276
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.20 E-value=0.085 Score=43.97 Aligned_cols=116 Identities=12% Similarity=0.077 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHHcCChHHHHHHHHH
Q 039523 32 YETSKILREAAMALNSLYP-DGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACL-HMIKNKSKEAFIAFKE 109 (244)
Q Consensus 32 ~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~-~~~~~~~~~A~~~~~~ 109 (244)
++.....+.+++.....++ -+|+.+-..-.+..-...|...|.++-+.......++..-|.+ |...++..-|...|+-
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeL 426 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFEL 426 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence 5555666666666543332 3455555556666666777777777665544444444444433 4456777777777777
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 110 ALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 110 a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
.++..++.+..-......+...|+-..+...|++++..
T Consensus 427 GLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 427 GLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 77777777777777777777777777777777777765
No 277
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.07 E-value=0.018 Score=39.63 Aligned_cols=83 Identities=16% Similarity=-0.002 Sum_probs=62.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 039523 53 WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG 132 (244)
Q Consensus 53 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~ 132 (244)
+......-...++.+++...+...--+.|+.+..-..-|.++...|+|.+|+..+++.....+..+..--.++.|+..+|
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 33444445557778888887777777788888887778888888888888888888887777777777777788888887
Q ss_pred CHH
Q 039523 133 NIG 135 (244)
Q Consensus 133 ~~~ 135 (244)
|..
T Consensus 93 Dp~ 95 (153)
T TIGR02561 93 DAE 95 (153)
T ss_pred ChH
Confidence 765
No 278
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.07 E-value=0.0013 Score=48.34 Aligned_cols=61 Identities=28% Similarity=0.497 Sum_probs=53.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH
Q 039523 24 RSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENG 84 (244)
Q Consensus 24 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 84 (244)
......++.+.|.+.|.+++...|+....|+.+|....+.|+++.|.+.|++.++++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3456778899999999999999999999999999999999999999999999999998663
No 279
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.03 E-value=0.0017 Score=31.49 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=7.6
Q ss_pred HHHHHHccCHHHHHHHHHHHH
Q 039523 57 GAAALKARDVEKALDVFTRAV 77 (244)
Q Consensus 57 a~~~~~~g~~~~A~~~~~~a~ 77 (244)
|.++...|++++|...+.+++
T Consensus 8 a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 8 GNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHhhHHHHHHHHHHHH
Confidence 333333333333333333333
No 280
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.02 E-value=0.0015 Score=31.69 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 039523 86 AWNIIACLHMIKNKSKEAFIAFKEALKLKR 115 (244)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 115 (244)
++..+|.++...|++++|+..+.++++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555555555555555555555444
No 281
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.096 Score=39.67 Aligned_cols=124 Identities=15% Similarity=0.160 Sum_probs=108.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChH-H
Q 039523 25 SAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKAR-DVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSK-E 102 (244)
Q Consensus 25 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~-~ 102 (244)
++.....-..|+.....++.++|.+-.+|...-.++...+ +..+-++++...+.-+|.+..+|...-.+....|+.. .
T Consensus 52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccc
Confidence 4445667788999999999999999999887777766654 5677889999999999999999999999999999887 7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523 103 AFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 103 A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
-++..+.++..+..+..+|...-.++..-+.++.-+.+..+.++.+
T Consensus 132 ELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~D 177 (318)
T KOG0530|consen 132 ELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEED 177 (318)
T ss_pred hHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 7888999999999999999999999999999999999888888765
No 282
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.96 E-value=0.0028 Score=48.75 Aligned_cols=88 Identities=16% Similarity=0.108 Sum_probs=67.4
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523 73 FTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWEN-YSHVALDVGNIGQALEAVQMVLNITNNK 151 (244)
Q Consensus 73 ~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~p~~ 151 (244)
|.++....|+++..|...+....+.|-|.+-...|.+++..+|.+++.|.. .+.-+...++++.++..+.++++.+|+.
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 334555567888888888888888888888888888888888888888877 4455667788888888888888888887
Q ss_pred hhhHHHHHH
Q 039523 152 RIDTELLER 160 (244)
Q Consensus 152 ~~~~~~l~~ 160 (244)
+..|...-+
T Consensus 176 p~iw~eyfr 184 (435)
T COG5191 176 PRIWIEYFR 184 (435)
T ss_pred chHHHHHHH
Confidence 765554433
No 283
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.03 Score=46.92 Aligned_cols=116 Identities=16% Similarity=0.045 Sum_probs=69.0
Q ss_pred ccCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHH-HHhcCCCcHHHHH
Q 039523 12 QMISQLELRS--LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTR-AVQLDPENGEAWN 88 (244)
Q Consensus 12 ~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-a~~~~p~~~~~~~ 88 (244)
+|.++..+.. +...+...+....+.......+..+|+++.+..+++......|....+...+.. +....|++..+..
T Consensus 61 ~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 140 (620)
T COG3914 61 NDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLG 140 (620)
T ss_pred CCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHh
Confidence 4444444322 355555566666666666777777777777777777666666665555444443 5666666655444
Q ss_pred HH------HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 039523 89 II------ACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV 127 (244)
Q Consensus 89 ~l------~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 127 (244)
.+ +......|+..++.....++....|.++.+...+...
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 141 HLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 33 6666666666666666666666666665554444444
No 284
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.93 E-value=0.0033 Score=48.43 Aligned_cols=86 Identities=15% Similarity=0.228 Sum_probs=71.8
Q ss_pred HHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHH-HHHHHHHcCChHHHHHHHHHHHhcCCCCHH
Q 039523 41 AAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNI-IACLHMIKNKSKEAFIAFKEALKLKRNGWQ 119 (244)
Q Consensus 41 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~-l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 119 (244)
++....|+++..|...+....+.|-+.+-...|.++++.+|.+.+.|.. .+.-+...++++.+...|.++++.+|+++.
T Consensus 98 R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~ 177 (435)
T COG5191 98 RSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR 177 (435)
T ss_pred hhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch
Confidence 3444457788899998888888899999999999999999999999987 445567889999999999999999999988
Q ss_pred HHHHHHH
Q 039523 120 LWENYSH 126 (244)
Q Consensus 120 ~~~~la~ 126 (244)
.|...-.
T Consensus 178 iw~eyfr 184 (435)
T COG5191 178 IWIEYFR 184 (435)
T ss_pred HHHHHHH
Confidence 8866543
No 285
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.054 Score=45.47 Aligned_cols=123 Identities=16% Similarity=0.102 Sum_probs=98.9
Q ss_pred CCHHHHHHHHHHHHhhCCCChhHHHH--HHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 039523 30 GEYETSKILREAAMALNSLYPDGWFA--LGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAF 107 (244)
Q Consensus 30 ~~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 107 (244)
+....++..+...+..++.++..+.. ++..+...+....+.......+..+|++..++.+++..+...|....+...+
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444777777778888888876443 4777777888889999999999999999999999999988877776666665
Q ss_pred HH-HHhcCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523 108 KE-ALKLKRNGWQLWENY------SHVALDVGNIGQALEAVQMVLNITNNKR 152 (244)
Q Consensus 108 ~~-a~~~~p~~~~~~~~l------a~~~~~~~~~~~A~~~~~~al~~~p~~~ 152 (244)
.. +....|++......+ +.....+|+..++.....++.+..|..+
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~ 176 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYP 176 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhh
Confidence 55 888888887665544 8888889999999999999999998854
No 286
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.89 E-value=0.0056 Score=50.52 Aligned_cols=103 Identities=14% Similarity=-0.074 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHc---cCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 039523 15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKA---RDVEKALDVFTRAVQLDPENGEAWNIIA 91 (244)
Q Consensus 15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 91 (244)
..+-...-|.-.+..+....|+..|.+++...|.....+.+.+.++++. |+.-.|+..+..++.++|....+|+.++
T Consensus 373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la 452 (758)
T KOG1310|consen 373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLA 452 (758)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHH
Confidence 3444455555566667788899999999999999999999998888875 5667888888899999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523 92 CLHMIKNKSKEAFIAFKEALKLKRNG 117 (244)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~a~~~~p~~ 117 (244)
.++...+++.+|+.+...+....|.+
T Consensus 453 ~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 453 RALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 99999999999999988777777754
No 287
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.87 E-value=0.099 Score=44.89 Aligned_cols=139 Identities=17% Similarity=0.068 Sum_probs=97.6
Q ss_pred chHHHHHHh-----hccCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc---CHHH
Q 039523 2 MPAMKKLWK-----FQMISQLELRSLARSAYNRG-----EYETSKILREAAMALNSLYPDGWFALGAAALKAR---DVEK 68 (244)
Q Consensus 2 i~~~~~al~-----~~p~~~~~~~~la~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~ 68 (244)
+.+|+.+.+ ..-.++.+.+.+|.+|.... +...|..+|.++-... ++.+.+.+|.++.... ++..
T Consensus 269 ~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~ 346 (552)
T KOG1550|consen 269 IEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRR 346 (552)
T ss_pred HHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHH
Confidence 455555554 01225667889999999843 7888999999998775 5667778888888766 6789
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHc----CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHH
Q 039523 69 ALDVFTRAVQLDPENGEAWNIIACLHMIK----NKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV-GNIGQALEAVQM 143 (244)
Q Consensus 69 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~----~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~ 143 (244)
|.++|..+.+.. +..+.+.+|.|+..- .+...|..++.++.+.. .+.+...++.++..- +++..+.-.+..
T Consensus 347 A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~ 422 (552)
T KOG1550|consen 347 AFEYYSLAAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLY 422 (552)
T ss_pred HHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHH
Confidence 999999988654 677888888887643 46789999999999987 344444444443332 666665554444
Q ss_pred HHh
Q 039523 144 VLN 146 (244)
Q Consensus 144 al~ 146 (244)
...
T Consensus 423 ~a~ 425 (552)
T KOG1550|consen 423 LAE 425 (552)
T ss_pred HHH
Confidence 433
No 288
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.85 E-value=0.057 Score=47.34 Aligned_cols=131 Identities=18% Similarity=0.117 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---------------------CCCChhHHHHHHHHHHHccCHHHHHHH
Q 039523 14 ISQLELRSLARSAYNRGEYETSKILREAAMAL---------------------NSLYPDGWFALGAAALKARDVEKALDV 72 (244)
Q Consensus 14 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------------------~p~~~~~~~~la~~~~~~g~~~~A~~~ 72 (244)
.++..|...|......|+.+.|+.+|..+-.. ...+..+.+.+|..|...|++.+|+..
T Consensus 910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~F 989 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKF 989 (1416)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34566777788888999999999999987432 244567889999999999999999998
Q ss_pred HHHHHh------cCCCc--HHH------------HHHHHHHHHHcC-ChHHHHHHHHHH------Hh-------------
Q 039523 73 FTRAVQ------LDPEN--GEA------------WNIIACLHMIKN-KSKEAFIAFKEA------LK------------- 112 (244)
Q Consensus 73 ~~~a~~------~~p~~--~~~------------~~~l~~~~~~~~-~~~~A~~~~~~a------~~------------- 112 (244)
|.++-. +...+ .+- ....+..|...| ..+.|+..|.+| ++
T Consensus 990 fTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~l 1069 (1416)
T KOG3617|consen 990 FTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDL 1069 (1416)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHH
Confidence 887643 32211 111 122233344444 555555555432 11
Q ss_pred ----cCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039523 113 ----LKR-NGWQLWENYSHVALDVGNIGQALEAVQMV 144 (244)
Q Consensus 113 ----~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~a 144 (244)
++| .++..+...+..+....+|++|...+-.+
T Consensus 1070 Ia~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1070 IAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 123 46888889999999999999997765444
No 289
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.81 E-value=0.17 Score=39.60 Aligned_cols=131 Identities=14% Similarity=0.080 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCc-HH
Q 039523 15 SQLELRSLARSAYN----RGEYETSKILREAAMALNSLYPDGWFALGAAALK----ARDVEKALDVFTRAVQLDPEN-GE 85 (244)
Q Consensus 15 ~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~-~~ 85 (244)
++.....++..|.. ..+..+|..+|+.+ ....++.+.+.+|.++.. ..+..+|..+|+++....-.. ..
T Consensus 72 ~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~ 149 (292)
T COG0790 72 DAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAAL 149 (292)
T ss_pred ChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHH
Confidence 34677888888876 45688899999944 445577888999999988 559999999999999875443 34
Q ss_pred HHHHHHHHHHHcC-------ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcC
Q 039523 86 AWNIIACLHMIKN-------KSKEAFIAFKEALKLKRNGWQLWENYSHVALD----VGNIGQALEAVQMVLNITN 149 (244)
Q Consensus 86 ~~~~l~~~~~~~~-------~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p 149 (244)
+.+.+|.++..-+ +...|...|.++-... ++.+...+|.+|.. ..++++|..+|.++-+...
T Consensus 150 ~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 150 AMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 4777888776642 2237888888887766 67888899988765 3489999999999998765
No 290
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.15 Score=42.87 Aligned_cols=138 Identities=14% Similarity=-0.002 Sum_probs=100.9
Q ss_pred ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---------------------CCCChh---HHHHHHHHHHHccCHH
Q 039523 12 QMISQLELRSLARSAYNRGEYETSKILREAAMAL---------------------NSLYPD---GWFALGAAALKARDVE 67 (244)
Q Consensus 12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------------------~p~~~~---~~~~la~~~~~~g~~~ 67 (244)
.|.+...+..++.++..+|+.+.|.....+++=. .|.|-. +.+..-..+.+.|.+.
T Consensus 280 sPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~r 359 (665)
T KOG2422|consen 280 SPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWR 359 (665)
T ss_pred CCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChH
Confidence 6788999999999999999999999988887632 122222 2334445566789999
Q ss_pred HHHHHHHHHHhcCCC-cHHHHHHHHHHH-HHcCChHHHHHHHHHH-----HhcCCCCHHHHHHHHHHHHHcCC---HHHH
Q 039523 68 KALDVFTRAVQLDPE-NGEAWNIIACLH-MIKNKSKEAFIAFKEA-----LKLKRNGWQLWENYSHVALDVGN---IGQA 137 (244)
Q Consensus 68 ~A~~~~~~a~~~~p~-~~~~~~~l~~~~-~~~~~~~~A~~~~~~a-----~~~~p~~~~~~~~la~~~~~~~~---~~~A 137 (244)
.|.++++-.++++|. +|-+...+..++ .+..+|.--+..++.. +...|+.+ .-..+|.+|..... -+.|
T Consensus 360 TA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa 438 (665)
T KOG2422|consen 360 TALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG-YSLALARFFLRKNEEDDRQSA 438 (665)
T ss_pred HHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch-HHHHHHHHHHhcCChhhHHHH
Confidence 999999999999998 777666555554 5667788777777665 33345543 33456666666655 5778
Q ss_pred HHHHHHHHhhcCC
Q 039523 138 LEAVQMVLNITNN 150 (244)
Q Consensus 138 ~~~~~~al~~~p~ 150 (244)
...+.+|+++.|.
T Consensus 439 ~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 439 LNALLQALKHHPL 451 (665)
T ss_pred HHHHHHHHHhCcH
Confidence 8999999999885
No 291
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.041 Score=46.64 Aligned_cols=97 Identities=9% Similarity=0.022 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 039523 52 GWFALGAAALKARDVEKALDVFTRAVQLDPEN------GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYS 125 (244)
Q Consensus 52 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la 125 (244)
++.+-|.-.++..+|..+++.|...+..-|.+ ......++.||....+.+.|++++++|-+.+|.++......-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34556777888899999999999998876654 335567888999999999999999999999999988888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhc
Q 039523 126 HVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 126 ~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
.+....|..++|+.+..+.....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhhh
Confidence 88888899999988887776554
No 292
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.70 E-value=0.098 Score=35.39 Aligned_cols=81 Identities=16% Similarity=0.139 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHcCC---hHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHH
Q 039523 85 EAWNIIACLHMIKNK---SKEAFIAFKEALK-LKRN-GWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLE 159 (244)
Q Consensus 85 ~~~~~l~~~~~~~~~---~~~A~~~~~~a~~-~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 159 (244)
...+++++++.+..+ ..+.+.+++..++ -.|. ...+.+.++..+.+.++|+.++.+....++..|++......-.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~ 112 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKE 112 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 344445555443333 2344455555553 2222 2344555555555555555555555555555555444333333
Q ss_pred HHHHHh
Q 039523 160 RIVLNL 165 (244)
Q Consensus 160 ~~~~~~ 165 (244)
.+...+
T Consensus 113 ~ied~i 118 (149)
T KOG3364|consen 113 TIEDKI 118 (149)
T ss_pred HHHHHH
Confidence 333333
No 293
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.69 E-value=0.28 Score=41.44 Aligned_cols=124 Identities=15% Similarity=0.084 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHH
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL-DPENGEAWNIIACLH 94 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~ 94 (244)
...|..........|+++...-.|++++--.......|..++......|+.+-|...+..+.++ .|..+.....-+.+.
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 4556666777788999999999999999988889999999999999999999999988888875 577888888889999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 039523 95 MIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE 139 (244)
Q Consensus 95 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~ 139 (244)
...|++..|...+++...--|+...+-...+......|+.+.+..
T Consensus 377 e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 999999999999999998889988888888888889999988874
No 294
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.68 E-value=0.1 Score=35.31 Aligned_cols=77 Identities=19% Similarity=0.227 Sum_probs=62.8
Q ss_pred ChhHHHHHHHHHHHccC---HHHHHHHHHHHHh-cCCC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q 039523 49 YPDGWFALGAAALKARD---VEKALDVFTRAVQ-LDPE-NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWEN 123 (244)
Q Consensus 49 ~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~-~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 123 (244)
.....+++|.++.+..+ ..+.+.+++..++ ..|. ..+..+.++..+.+.++|+.++.+.+..++..|++..+...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 56678888998888765 5678889999996 4453 45678889999999999999999999999999999876544
Q ss_pred HH
Q 039523 124 YS 125 (244)
Q Consensus 124 la 125 (244)
.-
T Consensus 111 k~ 112 (149)
T KOG3364|consen 111 KE 112 (149)
T ss_pred HH
Confidence 33
No 295
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.66 E-value=0.12 Score=35.73 Aligned_cols=84 Identities=10% Similarity=-0.022 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039523 17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI 96 (244)
Q Consensus 17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 96 (244)
..+......-...++.+++...+...--+.|+.+.+-..-|.+++..|+|.+|+..++......+..+...-.++.|+..
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 34555556666689999999999998889999999999999999999999999999999999888888888889999988
Q ss_pred cCCh
Q 039523 97 KNKS 100 (244)
Q Consensus 97 ~~~~ 100 (244)
+|+.
T Consensus 91 l~Dp 94 (153)
T TIGR02561 91 KGDA 94 (153)
T ss_pred cCCh
Confidence 8875
No 296
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.035 Score=47.02 Aligned_cols=96 Identities=17% Similarity=0.155 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 039523 18 ELRSLARSAYNRGEYETSKILREAAMALNSLY------PDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIA 91 (244)
Q Consensus 18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 91 (244)
++.+-|.-+++..+|..+++.|...+..-|.+ ......++.||....+.|.|.++++.+-+.+|.++-.-..+.
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34456777888999999999999999877654 456778999999999999999999999999999998888888
Q ss_pred HHHHHcCChHHHHHHHHHHHhc
Q 039523 92 CLHMIKNKSKEAFIAFKEALKL 113 (244)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~a~~~ 113 (244)
.+....|..++|+.+..+....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 8888999999999988776654
No 297
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.64 E-value=0.081 Score=38.10 Aligned_cols=98 Identities=16% Similarity=0.079 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CCHH----HH
Q 039523 51 DGWFALGAAALKARDVEKALDVFTRAVQLDPEN---GEAWNIIACLHMIKNKSKEAFIAFKEALKLKR--NGWQ----LW 121 (244)
Q Consensus 51 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~----~~ 121 (244)
.++..+|..|.+.|+.++|+++|.++....... .+.++.+..+....+++.....+..++-..-. .++. ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 467788888888888888888888877654332 35667777888888888888888877765522 2222 23
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523 122 ENYSHVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 122 ~~la~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
..-|..+...++|..|...|-.+..-.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 345667777889999888887665433
No 298
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.64 E-value=0.0036 Score=46.09 Aligned_cols=60 Identities=22% Similarity=0.335 Sum_probs=55.3
Q ss_pred HHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523 58 AAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG 117 (244)
Q Consensus 58 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 117 (244)
......++.+.|.+.|.+++...|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 445678899999999999999999999999999999999999999999999999999876
No 299
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.56 E-value=0.07 Score=38.43 Aligned_cols=99 Identities=17% Similarity=0.045 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CcHH----H
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQLDP--ENGE----A 86 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~----~ 86 (244)
..++..+|..|.+.|+.+.|++.|.++....... ...+..+..+.+..+++.....++.++-..-. .+.. .
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 4678899999999999999999999988765433 35678888899999999999999988876532 2232 2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 039523 87 WNIIACLHMIKNKSKEAFIAFKEALKLK 114 (244)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 114 (244)
....|..+...++|..|-..|-.+..-.
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 3445677788999999999987765544
No 300
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.55 E-value=0.17 Score=41.36 Aligned_cols=126 Identities=14% Similarity=0.091 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHH--HHHHHHh---------cCC--
Q 039523 16 QLELRSLARSAYNRGE-YETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALD--VFTRAVQ---------LDP-- 81 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~a~~---------~~p-- 81 (244)
+..+..-|.-++..|. -++|+..++.+++..+.+...-. .... +-...|..|+. .+.+.++ +.|
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n-~v~~-fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~ 456 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECEN-IVFL-FVKQAYKQALSMHAIPRLLKLEDFITEVGLTPIT 456 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHH-HHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccc
Confidence 3445666788888888 88899999999999887764322 1111 11222333322 1222222 122
Q ss_pred -CcHHHHHHH--HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039523 82 -ENGEAWNII--ACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMV 144 (244)
Q Consensus 82 -~~~~~~~~l--~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 144 (244)
.+.+.-..+ |..++.+|+|.++.-+..-..++.| ++.++..+|.|.....+|++|..++...
T Consensus 457 i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 457 ISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred ccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 223333334 4457899999999999999999999 8999999999999999999999998653
No 301
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.55 E-value=0.069 Score=35.25 Aligned_cols=62 Identities=13% Similarity=0.072 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh-------cCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 86 AWNIIACLHMIKNKSKEAFIAFKEALK-------LKRNGWQ----LWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~a~~-------~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
++..++.++..+|+|++++...++++. ++.+... +.+..+..+...|+.++|+..|+++-+.
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 344555556666666655555544443 2333333 3455677778888888888888877654
No 302
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.26 Score=40.75 Aligned_cols=131 Identities=18% Similarity=0.127 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-Ch--hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc--------
Q 039523 15 SQLELRSLARSAYNRGEYETSKILREAAMALNSL-YP--DGWFALGAAALKARDVEKALDVFTRAVQLDPEN-------- 83 (244)
Q Consensus 15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------- 83 (244)
.+..++.+|......+.++.|...|..+.+.-.. +. .+..++|.+|.+.|+.+.-.+.++. +.|.+
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~ 442 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQR 442 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHH
Confidence 4677888888888899999999999999887542 22 3445889999998887665555444 34432
Q ss_pred --HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523 84 --GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN------GWQLWENYSHVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 84 --~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
..+++..|...+.++++.+|...+.+.++.... ..-.+..++.+....|+..++....+-++...
T Consensus 443 l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 443 LEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLA 515 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHH
Confidence 346777888899999999999999999988521 13346677888899999999888777776654
No 303
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.53 E-value=0.21 Score=40.03 Aligned_cols=119 Identities=17% Similarity=0.147 Sum_probs=91.9
Q ss_pred CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-C-C----
Q 039523 47 SLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP----ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK-R-N---- 116 (244)
Q Consensus 47 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p-~---- 116 (244)
......|..++.+..+.|+++.|...+.++...++ ..+.+.+..+.++...|+..+|+..++..+... . .
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 34566889999999999999999999999988653 257788889999999999999999998888711 0 0
Q ss_pred ----------------------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 039523 117 ----------------------------GWQLWENYSHVALDV------GNIGQALEAVQMVLNITNNKRIDTELLERIV 162 (244)
Q Consensus 117 ----------------------------~~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 162 (244)
...++..+|...... ++.+++...|.+++..+|+....+..++...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 134556666666666 7888999999999999998666555555544
Q ss_pred HHh
Q 039523 163 LNL 165 (244)
Q Consensus 163 ~~~ 165 (244)
..+
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 443
No 304
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.36 Score=39.98 Aligned_cols=128 Identities=14% Similarity=0.065 Sum_probs=94.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhC---CC-------ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-cH--HHH
Q 039523 21 SLARSAYNRGEYETSKILREAAMALN---SL-------YPDGWFALGAAALKARDVEKALDVFTRAVQLDPE-NG--EAW 87 (244)
Q Consensus 21 ~la~~~~~~~~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~--~~~ 87 (244)
.+..+-.-.|++.+|+.....+.... |. .+.+.+.+|......|.++.|...|..+++.... +. -+.
T Consensus 328 ~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~n 407 (629)
T KOG2300|consen 328 HIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCN 407 (629)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44555566899999999888777653 32 3456778888888899999999999999886542 22 345
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523 88 NIIACLHMIKNKSKEAFIAFKEALKLKRNG-------WQLWENYSHVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
.++|.+|...|+-+.-.+.++..--.+... ..+++..|...+.++++.+|...+.+.++..
T Consensus 408 lnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 408 LNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 678899999888766655554432221111 3467778888899999999999999999876
No 305
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.41 E-value=0.015 Score=48.13 Aligned_cols=90 Identities=18% Similarity=0.060 Sum_probs=77.9
Q ss_pred HHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc---CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 039523 61 LKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIK---NKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQA 137 (244)
Q Consensus 61 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A 137 (244)
+..+.+..|+..|.++++..|.....+.+.+.++++. |+.-.|+.-+..+++++|....+++.++.++..++++.+|
T Consensus 385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEA 464 (758)
T ss_pred hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHh
Confidence 3345678899999999999999999999998888764 4556777778889999999999999999999999999999
Q ss_pred HHHHHHHHhhcCC
Q 039523 138 LEAVQMVLNITNN 150 (244)
Q Consensus 138 ~~~~~~al~~~p~ 150 (244)
+++...+....|.
T Consensus 465 l~~~~alq~~~Pt 477 (758)
T KOG1310|consen 465 LSCHWALQMSFPT 477 (758)
T ss_pred hhhHHHHhhcCch
Confidence 9998888777885
No 306
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=96.40 E-value=0.034 Score=50.73 Aligned_cols=138 Identities=15% Similarity=0.176 Sum_probs=112.2
Q ss_pred hccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--------CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc---
Q 039523 11 FQMISQLELRSLARSAYNRGEYETSKILREAAMALN--------SLYPDGWFALGAAALKARDVEKALDVFTRAVQL--- 79 (244)
Q Consensus 11 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--- 79 (244)
++|+.+..+..++..+...|++++|+..-.++.-+. |+....+.+++...+..++...|...+.++...
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence 488899999999999999999999999888775442 455667889999999999999999998888764
Q ss_pred -----CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523 80 -----DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR--------NGWQLWENYSHVALDVGNIGQALEAVQMVLN 146 (244)
Q Consensus 80 -----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 146 (244)
.|.-.....+++.++...++++.|+.+.+.|...+. .....+..++......+++..|..+.+....
T Consensus 1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 344455667888888899999999999999988642 2356678888999999999998888777765
Q ss_pred hc
Q 039523 147 IT 148 (244)
Q Consensus 147 ~~ 148 (244)
+.
T Consensus 1128 iy 1129 (1236)
T KOG1839|consen 1128 IY 1129 (1236)
T ss_pred HH
Confidence 53
No 307
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.18 E-value=0.43 Score=37.13 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHhh
Q 039523 18 ELRSLARSAYNRG-EYETSKILREAAMAL 45 (244)
Q Consensus 18 ~~~~la~~~~~~~-~~~~A~~~~~~al~~ 45 (244)
.+++.|......+ +++.|..+++++.+.
T Consensus 37 ~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 37 VCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3344444444444 555555555555444
No 308
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.17 E-value=0.43 Score=39.18 Aligned_cols=131 Identities=9% Similarity=-0.031 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh-----HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 039523 17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPD-----GWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIA 91 (244)
Q Consensus 17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 91 (244)
..+...|.++..++++.+|...|.+..+...+++. ++.++....+-.++.+.-...+...-+..|..+....-.|
T Consensus 7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~ 86 (549)
T PF07079_consen 7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKA 86 (549)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 45667799999999999999999999887665543 3444444455567777777777777777888888888899
Q ss_pred HHHHHcCChHHHHHHHHHHHhc----CC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 92 CLHMIKNKSKEAFIAFKEALKL----KR-----------NGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~a~~~----~p-----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
...++.+++.+|++.+..-... .| ++...-...+.++...|++.+++..+.+.+..
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 9999999999999887644332 11 11122234688899999999999998888754
No 309
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.066 Score=40.79 Aligned_cols=73 Identities=18% Similarity=-0.011 Sum_probs=57.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 039523 53 WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYS 125 (244)
Q Consensus 53 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la 125 (244)
..++=..+.+.++++.|..+.++.+..+|.++.-+...|.+|.+.|.+..|+..+...++.-|+.+.+-...+
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 3455566778888888888888888888888888888888888888888888888888888888776554433
No 310
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.08 E-value=0.022 Score=29.76 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523 119 QLWENYSHVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 119 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
.++.++|.++...|++++|..++++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 467788888888888888888888887764
No 311
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.02 E-value=0.12 Score=38.51 Aligned_cols=65 Identities=17% Similarity=0.125 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHH-------HHHHHHHhhCCC------ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 16 QLELRSLARSAYNRGEYETSK-------ILREAAMALNSL------YPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~-------~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
+..+..+|.+|...|+.+... ..|.+++..... ...+.+.+|.+..+.|++++|.++|.+++...
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 455666677777777644333 333333332211 12455566666666666666666666666543
No 312
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.98 E-value=0.026 Score=29.49 Aligned_cols=29 Identities=31% Similarity=0.416 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 039523 17 LELRSLARSAYNRGEYETSKILREAAMAL 45 (244)
Q Consensus 17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~ 45 (244)
.++..+|.++...|++++|..++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34555666666666666666666666543
No 313
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=0.51 Score=42.76 Aligned_cols=60 Identities=13% Similarity=0.061 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523 14 ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78 (244)
Q Consensus 14 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 78 (244)
+.+.+|..+|....+.|...+|++.|-++ +++..+.....+..+.|.|++-++++.-+-+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 45677777777777777777777777654 4566666667777777777777776654443
No 314
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.86 E-value=0.27 Score=39.77 Aligned_cols=104 Identities=17% Similarity=0.020 Sum_probs=77.2
Q ss_pred HHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc--------------C------------CCcH---HHHHHHH
Q 039523 41 AAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL--------------D------------PENG---EAWNIIA 91 (244)
Q Consensus 41 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------------~------------p~~~---~~~~~l~ 91 (244)
..++.+|-+...+..++.++.+.|+...|.+.+++++-. + +.|. -+.+...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 445778999999999999999999999999999988532 1 1222 2455667
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCC-CHHHHHHHHH-HHHHcCCHHHHHHHHHHH
Q 039523 92 CLHMIKNKSKEAFIAFKEALKLKRN-GWQLWENYSH-VALDVGNIGQALEAVQMV 144 (244)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~la~-~~~~~~~~~~A~~~~~~a 144 (244)
..+.+.|.+..|.++++-.+.++|. ++.......+ ...+.++++--++.++..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 7888999999999999999999998 6654444443 344556666555555543
No 315
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.85 E-value=0.036 Score=45.55 Aligned_cols=113 Identities=11% Similarity=-0.037 Sum_probs=91.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH
Q 039523 5 MKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENG 84 (244)
Q Consensus 5 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 84 (244)
...++...|.+|......+.++...|+|+.+...+.-+-..-.....+...+-......|++++|.....-.+.-.-.++
T Consensus 312 ~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ 391 (831)
T PRK15180 312 LFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDE 391 (831)
T ss_pred HHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCCh
Confidence 44567778999999999999999999999999887766655554555666667778889999999999888887777777
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523 85 EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG 117 (244)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 117 (244)
++..-.+......|-++++.-.+++.+.++|..
T Consensus 392 ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 392 EVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred hheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 777666677778888999999999999998753
No 316
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.80 E-value=1 Score=38.22 Aligned_cols=152 Identities=11% Similarity=-0.032 Sum_probs=115.5
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 039523 4 AMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALN-SLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPE 82 (244)
Q Consensus 4 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 82 (244)
+|++++.--......|...+.-....|+.+-|...+.++.+.. |..+.+...-+...-..|+++.|...+++.....|+
T Consensus 319 l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg 398 (577)
T KOG1258|consen 319 LFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPG 398 (577)
T ss_pred HHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCc
Confidence 4555555445678899999999999999999999888888764 677778888888888999999999999999988899
Q ss_pred cHHHHHHHHHHHHHcCChHHHHH---HHHHHHhcCCCC---HHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhcCCchhhH
Q 039523 83 NGEAWNIIACLHMIKNKSKEAFI---AFKEALKLKRNG---WQLWENYSHV-ALDVGNIGQALEAVQMVLNITNNKRIDT 155 (244)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~---~~~~a~~~~p~~---~~~~~~la~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~ 155 (244)
...+-.....+..++|..+.+.. ++.....-..+. ...+...++. +.-.++.+.|...+.+++...|+.....
T Consensus 399 ~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~ 478 (577)
T KOG1258|consen 399 LVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLY 478 (577)
T ss_pred hhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHH
Confidence 99988888899999999988884 333222221111 2334444443 4456789999999999999999854433
No 317
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.78 E-value=0.23 Score=36.92 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=56.9
Q ss_pred ccCHHHHHHHHHHHHhc----C-C--CcHHHHHHHHHHHHHcCChH-------HHHHHHHHHHhcCC------CCHHHHH
Q 039523 63 ARDVEKALDVFTRAVQL----D-P--ENGEAWNIIACLHMIKNKSK-------EAFIAFKEALKLKR------NGWQLWE 122 (244)
Q Consensus 63 ~g~~~~A~~~~~~a~~~----~-p--~~~~~~~~l~~~~~~~~~~~-------~A~~~~~~a~~~~p------~~~~~~~ 122 (244)
...+++|++.|.-|+-. . + .-+..+..+|.++...|+.+ .|...|.+++.... +...+.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 34556666666554432 1 1 12456777888888888854 45555555554432 2256788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523 123 NYSHVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 123 ~la~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
.+|.+..+.|++++|...|.+++...
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 89999999999999999999998754
No 318
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.76 E-value=0.32 Score=32.19 Aligned_cols=96 Identities=20% Similarity=0.229 Sum_probs=68.1
Q ss_pred HHHHHH--HHHHhcCCHHHHHHHHHHHHhhCCCC------------hhHHHHHHHHHHHccCHHHHHHHHHHHHh-----
Q 039523 18 ELRSLA--RSAYNRGEYETSKILREAAMALNSLY------------PDGWFALGAAALKARDVEKALDVFTRAVQ----- 78 (244)
Q Consensus 18 ~~~~la--~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~----- 78 (244)
+|..|+ .-.+..|-|++|...+++++.....- .-++-.|+..+..+|+|++++..-.+++.
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 444443 44456789999999999999864321 23556788889999999988877776665
Q ss_pred --cCCCcHHHH----HHHHHHHHHcCChHHHHHHHHHHHhc
Q 039523 79 --LDPENGEAW----NIIACLHMIKNKSKEAFIAFKEALKL 113 (244)
Q Consensus 79 --~~p~~~~~~----~~l~~~~~~~~~~~~A~~~~~~a~~~ 113 (244)
++.+....| +..+..+...|+.++|+..|+.+-++
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 344554444 56788899999999999999987654
No 319
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=0.15 Score=38.95 Aligned_cols=68 Identities=12% Similarity=0.047 Sum_probs=61.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhh
Q 039523 87 WNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRID 154 (244)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 154 (244)
..++=..+...++++.|..+.++.+.++|.++.-+.--|.+|.++|.+..|+..++..++..|+.+..
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 34455678889999999999999999999999999999999999999999999999999999997644
No 320
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.57 E-value=1 Score=37.20 Aligned_cols=142 Identities=13% Similarity=0.136 Sum_probs=99.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH
Q 039523 5 MKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENG 84 (244)
Q Consensus 5 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 84 (244)
++.-++.+|.+.-.|+.+-..+..+|.+++-.+.|++...-.|-.+.+|...-..-+..++|..-...|.+++...- +.
T Consensus 31 LRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l-~l 109 (660)
T COG5107 31 LRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL-NL 109 (660)
T ss_pred HHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-cH
Confidence 44556779999999999999999999999999999999999998888998777777777889888888888886543 24
Q ss_pred HHHHHHHHHHHHcC-----C----hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHh
Q 039523 85 EAWNIIACLHMIKN-----K----SKEAFIAFKEALKLKRNGWQLWENYSHVALD---------VGNIGQALEAVQMVLN 146 (244)
Q Consensus 85 ~~~~~l~~~~~~~~-----~----~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~---------~~~~~~A~~~~~~al~ 146 (244)
+.|...-..-.+.+ + .-+|.+..-..+-.+|.....|...+..... +.+.+.-...|.+++.
T Consensus 110 dLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~ 189 (660)
T COG5107 110 DLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQ 189 (660)
T ss_pred hHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHc
Confidence 55544322222222 1 2244444334444578777888887776543 3344555667777775
Q ss_pred h
Q 039523 147 I 147 (244)
Q Consensus 147 ~ 147 (244)
.
T Consensus 190 t 190 (660)
T COG5107 190 T 190 (660)
T ss_pred C
Confidence 3
No 321
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=1.1 Score=36.44 Aligned_cols=133 Identities=17% Similarity=0.156 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccC--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc----CChHHHH
Q 039523 31 EYETSKILREAAMALNSLYPDGWFALGAAALKARD--VEKALDVFTRAVQLDPENGEAWNIIACLHMIK----NKSKEAF 104 (244)
Q Consensus 31 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~----~~~~~A~ 104 (244)
-.+.-+.+...++..+|+.-.+|.....++.+.+. +..=++.++++++.+|.+-.+|...-.+.... ....+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 45566677777788888888888888777776654 46667778888888887777665543333222 2245566
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 039523 105 IAFKEALKLKRNGWQLWENYSHVALD------VGN------IGQALEAVQMVLNITNNKRIDTELLERIVL 163 (244)
Q Consensus 105 ~~~~~a~~~~p~~~~~~~~la~~~~~------~~~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 163 (244)
++..+++.-++.+..+|.+-..+... .|+ ...-.+.-..|+-.+|+++..+-....+.+
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~ 240 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLG 240 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhc
Confidence 67777777777777777777666552 231 223345555666667775555444444443
No 322
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=95.52 E-value=0.08 Score=26.95 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHH--HHHHHhhCC
Q 039523 18 ELRSLARSAYNRGEYETSKIL--REAAMALNS 47 (244)
Q Consensus 18 ~~~~la~~~~~~~~~~~A~~~--~~~al~~~p 47 (244)
.++.+|-.+..+|++++|+.. |+-+..+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 344555555555555555555 334444443
No 323
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.41 E-value=0.18 Score=32.03 Aligned_cols=27 Identities=33% Similarity=0.320 Sum_probs=13.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039523 87 WNIIACLHMIKNKSKEAFIAFKEALKL 113 (244)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~a~~~ 113 (244)
..++|.++...|++++|+..+++++++
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344455555555555555555555444
No 324
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=1.7 Score=39.76 Aligned_cols=61 Identities=18% Similarity=0.198 Sum_probs=52.7
Q ss_pred CChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039523 48 LYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL 113 (244)
Q Consensus 48 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 113 (244)
+.+.+|..+|.+.++.|...+|++-|-++ ++|..+.....+..+.|.|++-+.++..+.+.
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 46789999999999999999999998664 57788888889999999999999988777654
No 325
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.27 E-value=0.18 Score=38.98 Aligned_cols=80 Identities=14% Similarity=0.252 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 039523 32 YETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEAL 111 (244)
Q Consensus 32 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 111 (244)
+..=+...++.++.. ...++..++..+...|+++.+.+.+++.+..+|.+-..|..+-..+...|+...|+..|++.-
T Consensus 137 f~~WV~~~R~~l~e~--~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 137 FDEWVLEQRRALEEL--FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 555555555555432 456788889999999999999999999999999999999999999999999999999998876
Q ss_pred hc
Q 039523 112 KL 113 (244)
Q Consensus 112 ~~ 113 (244)
+.
T Consensus 215 ~~ 216 (280)
T COG3629 215 KT 216 (280)
T ss_pred HH
Confidence 64
No 326
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.22 E-value=0.16 Score=32.29 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=46.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCC---------hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523 25 SAYNRGEYETSKILREAAMALNSLY---------PDGWFALGAAALKARDVEKALDVFTRAVQLDP 81 (244)
Q Consensus 25 ~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 81 (244)
...+.|++..|++.+.+.+...... ..++..+|.++...|++++|+..+++++++..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3467899999999888887753221 35677899999999999999999999998754
No 327
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.15 E-value=0.47 Score=41.15 Aligned_cols=132 Identities=15% Similarity=-0.011 Sum_probs=81.3
Q ss_pred HhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHH----------HHHHHHHHHccCHHHHHHHHHHHHh
Q 039523 9 WKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGW----------FALGAAALKARDVEKALDVFTRAVQ 78 (244)
Q Consensus 9 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~----------~~la~~~~~~g~~~~A~~~~~~a~~ 78 (244)
++.+| +++.|..+|......-.++-|...|-+.-.... .... ...|.+-.--|+|++|.+.|-.+-+
T Consensus 686 iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~G--ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~dr 762 (1189)
T KOG2041|consen 686 IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAG--IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADR 762 (1189)
T ss_pred HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccc--hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccch
Confidence 33355 589999999988888878877776665532211 0011 1223333334666666666543211
Q ss_pred cC-------------------------CC---cHHHHHHHHHHHHHcCChHHHHHHHHHHH-------------------
Q 039523 79 LD-------------------------PE---NGEAWNIIACLHMIKNKSKEAFIAFKEAL------------------- 111 (244)
Q Consensus 79 ~~-------------------------p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~------------------- 111 (244)
.+ .+ --.++.++|..+..+..|++|.++|...-
T Consensus 763 rDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE 842 (1189)
T KOG2041|consen 763 RDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELE 842 (1189)
T ss_pred hhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHH
Confidence 11 11 13578888888888888888888776432
Q ss_pred ---hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039523 112 ---KLKRNGWQLWENYSHVALDVGNIGQALEAVQM 143 (244)
Q Consensus 112 ---~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 143 (244)
..-|++...+-.+|..+...|.-++|.++|-+
T Consensus 843 ~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 843 VLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 22367777777888888888877777766543
No 328
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=95.06 E-value=0.097 Score=26.62 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHccCHHHHHHH
Q 039523 52 GWFALGAAALKARDVEKALDV 72 (244)
Q Consensus 52 ~~~~la~~~~~~g~~~~A~~~ 72 (244)
.++.+|..+...|++++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344555555555555555555
No 329
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.05 E-value=1.1 Score=37.34 Aligned_cols=76 Identities=21% Similarity=0.280 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 039523 19 LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKN 98 (244)
Q Consensus 19 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 98 (244)
...++..+..+|..+.|+... .++...+.|| .+.|+.+.|.+... ..+++..|-.+|.....+|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcC
Confidence 344455555666655555431 2444455444 56677776666432 2346677888888888888
Q ss_pred ChHHHHHHHHHH
Q 039523 99 KSKEAFIAFKEA 110 (244)
Q Consensus 99 ~~~~A~~~~~~a 110 (244)
+++-|.++|+++
T Consensus 362 ~~~lAe~c~~k~ 373 (443)
T PF04053_consen 362 NIELAEECYQKA 373 (443)
T ss_dssp BHHHHHHHHHHC
T ss_pred CHHHHHHHHHhh
Confidence 888888777754
No 330
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=95.00 E-value=0.31 Score=39.54 Aligned_cols=88 Identities=22% Similarity=0.112 Sum_probs=71.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCC--------CC----------hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH
Q 039523 23 ARSAYNRGEYETSKILREAAMALNS--------LY----------PDGWFALGAAALKARDVEKALDVFTRAVQLDPENG 84 (244)
Q Consensus 23 a~~~~~~~~~~~A~~~~~~al~~~p--------~~----------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 84 (244)
|...+++++|..|..-|+.++++.. .. ..+...+..||++.++.+-|+....+.+..+|...
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 5566778888888888888877532 11 12345789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH
Q 039523 85 EAWNIIACLHMIKNKSKEAFIAFKEA 110 (244)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~a 110 (244)
.-+...|.|...+.+|.+|-..+--+
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987765444
No 331
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.91 E-value=0.19 Score=38.96 Aligned_cols=62 Identities=15% Similarity=0.027 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039523 35 SKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI 96 (244)
Q Consensus 35 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 96 (244)
|+.+|.+|+.+.|++...+..+|.++...|+.-.|+-+|-+++......+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56788888888888888888888888888888888888888776654457777777777666
No 332
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=94.86 E-value=0.61 Score=37.97 Aligned_cols=56 Identities=9% Similarity=-0.007 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 039523 87 WNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQ 142 (244)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 142 (244)
--.+..||.++++.+.|+....+.+.++|.....+..-|.|+..+.+|.+|-.-+-
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSam 286 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAM 286 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999988865443
No 333
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.76 E-value=1.5 Score=34.11 Aligned_cols=123 Identities=13% Similarity=0.082 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc-CHHHHHHHHHHHHhc----CC---Cc----
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKAR-DVEKALDVFTRAVQL----DP---EN---- 83 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~----~p---~~---- 83 (244)
+..++..+.......+.+.+... ...+++.|......+ +++.|..+++++..+ .+ ..
T Consensus 12 A~~~~~K~~~~~~~~~~~~~~~L-----------a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~ 80 (278)
T PF08631_consen 12 AEHMYSKAKDLLNSLDPDMAEEL-----------ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGS 80 (278)
T ss_pred HHHHHHHhhhHHhcCCcHHHHHH-----------HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHH
Confidence 34444444444444444444333 345677888888888 999999998888776 21 11
Q ss_pred ---HHHHHHHHHHHHHcCChH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 039523 84 ---GEAWNIIACLHMIKNKSK---EAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITN 149 (244)
Q Consensus 84 ---~~~~~~l~~~~~~~~~~~---~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 149 (244)
..++..++.++...+.++ +|....+.+-.-.|+.+.++...-.++...++.+.+.+.+.+.+...+
T Consensus 81 elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 81 ELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 235677888888887765 444455555555677777775555555557888888888888776543
No 334
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=1.6 Score=35.52 Aligned_cols=128 Identities=11% Similarity=0.013 Sum_probs=88.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhC---------CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCcHHH-H
Q 039523 23 ARSAYNRGEYETSKILREAAMALN---------SLYPDGWFALGAAALKARDVEKALDVFTRAVQL-----DPENGEA-W 87 (244)
Q Consensus 23 a~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p~~~~~-~ 87 (244)
...++.++++.+|..+-+..+..- --.+..|+.+..++...|+...-...+...+.. +.....+ .
T Consensus 133 ~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLi 212 (493)
T KOG2581|consen 133 LLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLI 212 (493)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHH
Confidence 334456788888888766665421 112456788888888888877666666554432 3222233 3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhc--CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 88 NIIACLHMIKNKSKEAFIAFKEALKL--KR--NGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
+.+-..|...+.|+.|.....+..-- .. ......+.+|.+..-+++|..|.+++-+|++..|+
T Consensus 213 N~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 213 NLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 44556778888899998887765422 11 23556788899999999999999999999999997
No 335
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.68 E-value=0.055 Score=25.18 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=10.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 039523 19 LRSLARSAYNRGEYETSKILR 39 (244)
Q Consensus 19 ~~~la~~~~~~~~~~~A~~~~ 39 (244)
...+|..+...|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 344445555555555544443
No 336
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=1.1 Score=36.41 Aligned_cols=102 Identities=13% Similarity=-0.012 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----CC-ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--C--cHH
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALN-----SL-YPDGWFALGAAALKARDVEKALDVFTRAVQLDP--E--NGE 85 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~--~~~ 85 (244)
+..|+.+...+...|+...-...+...+... .. .....+.+-..|+..+.|+.|.....+..--+. + -+.
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR 248 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR 248 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence 5677888888888888777776666655432 21 234566777888999999999998887652211 2 244
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523 86 AWNIIACLHMIKNKSKEAFIAFKEALKLKRNG 117 (244)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 117 (244)
..+.+|.+..-+++|..|.+++-+|+...|.+
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 66778999999999999999999999999974
No 337
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.59 E-value=1.1 Score=31.94 Aligned_cols=124 Identities=10% Similarity=-0.064 Sum_probs=90.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCC--hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHH
Q 039523 23 ARSAYNRGEYETSKILREAAMALNSLY--PDGWFALGAAALKARDVEKALDVFTRAVQLDPEN----GEAWNIIACLHMI 96 (244)
Q Consensus 23 a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~ 96 (244)
+.-....++.++|+..|...-+..-.+ .-+.+..|.+....|+...|+..|..+-+..|-. .-+...-+.++..
T Consensus 65 AL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 65 ALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc
Confidence 344455677777777777766554333 2356788899999999999999999887665421 2345666778889
Q ss_pred cCChHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523 97 KNKSKEAFIAFKEAL-KLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLN 146 (244)
Q Consensus 97 ~~~~~~A~~~~~~a~-~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 146 (244)
.|.|++-..-.+..- ..+|--..+...||....+.|++.+|...|.....
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 999988776654321 22444456778899999999999999999998876
No 338
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.59 E-value=0.27 Score=38.02 Aligned_cols=62 Identities=15% Similarity=0.027 Sum_probs=53.1
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALK 62 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 62 (244)
|..+|.+|+.+.|++...+..+|.++...|+.-.|+-+|-+++......+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999997765578888888888877
No 339
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.54 E-value=0.074 Score=24.73 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=10.7
Q ss_pred HHHHHHHHHHccCHHHHHHHH
Q 039523 53 WFALGAAALKARDVEKALDVF 73 (244)
Q Consensus 53 ~~~la~~~~~~g~~~~A~~~~ 73 (244)
...+|.++...|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 444555555555555555444
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.48 E-value=0.72 Score=38.46 Aligned_cols=105 Identities=21% Similarity=0.143 Sum_probs=67.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCC-hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHH
Q 039523 25 SAYNRGEYETSKILREAAMALNSLY-PDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEA 103 (244)
Q Consensus 25 ~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A 103 (244)
.....++++++....+.. ++-|.- ......++..+.+.|-.+.|+... .++...+.+ ..+.|+.+.|
T Consensus 270 ~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeL---Al~lg~L~~A 337 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFEL---ALQLGNLDIA 337 (443)
T ss_dssp HHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHH---HHHCT-HHHH
T ss_pred HHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHH---HHhcCCHHHH
Confidence 344578888876666422 112222 334566777778888888877754 345566655 5688999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523 104 FIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLN 146 (244)
Q Consensus 104 ~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 146 (244)
.+..+ ..+++..|..+|.....+|+++-|..+|.++-.
T Consensus 338 ~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 338 LEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 87654 345788999999999999999999999988743
No 341
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.46 E-value=0.4 Score=37.08 Aligned_cols=80 Identities=11% Similarity=0.025 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523 66 VEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVL 145 (244)
Q Consensus 66 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 145 (244)
+..-+....+.++- ....++..++..+...|+++.+...+++.+..+|.+-..|..+...|...|+...|+..|++.-
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 44444444444432 2456788899999999999999999999999999999999999999999999999999999887
Q ss_pred hh
Q 039523 146 NI 147 (244)
Q Consensus 146 ~~ 147 (244)
+.
T Consensus 215 ~~ 216 (280)
T COG3629 215 KT 216 (280)
T ss_pred HH
Confidence 63
No 342
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.46 E-value=0.42 Score=44.11 Aligned_cols=133 Identities=16% Similarity=0.142 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHH------HHHH-HHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------
Q 039523 16 QLELRSLARSAYNRGEYETSKI------LREA-AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD-------- 80 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~------~~~~-al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-------- 80 (244)
..-....|......|.+.+|.+ .+.. .-.+.|+....+..++.++.+.|++++|+..-.++.-+.
T Consensus 932 a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 932 AKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 3444566677777778887777 4442 223467788899999999999999999999888765442
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKL--------KRNGWQLWENYSHVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
|+....+.+++...+..++...|...+.++..+ .|.......+++.++...++++.|+++.+.|+...
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 455667888888888889999999988887765 45556667888999999999999999999999865
No 343
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.38 E-value=1.4 Score=40.21 Aligned_cols=146 Identities=16% Similarity=0.061 Sum_probs=99.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCh---hHHHHHHHHHHHc----c---CHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 039523 22 LARSAYNRGEYETSKILREAAMALNSLYP---DGWFALGAAALKA----R---DVEKALDVFTRAVQLDPENGEAWNIIA 91 (244)
Q Consensus 22 la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~----g---~~~~A~~~~~~a~~~~p~~~~~~~~l~ 91 (244)
...++...+.|+.|+..|++.-.-.|... ++.+..|...... | .+++|+.-|++.- ..|.-|--|...|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHH
Confidence 34677788899999999999998888654 4666677666543 2 4677777776643 3566677788899
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523 92 CLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV-----GNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE 166 (244)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 166 (244)
.+|.++|++++-++++.-|++..|+.+..-...-.+..++ .+-..|....--++.+.|.... ...-.++...+.
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 638 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKIS-SREEEKFLEILY 638 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc-chHHHHHHHHHH
Confidence 9999999999999999999999988765433222222111 2334566777778888888432 223334444444
Q ss_pred ccc
Q 039523 167 GRT 169 (244)
Q Consensus 167 ~~~ 169 (244)
+..
T Consensus 639 ~~~ 641 (932)
T PRK13184 639 HKQ 641 (932)
T ss_pred hhc
Confidence 443
No 344
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.24 E-value=1.3 Score=34.12 Aligned_cols=148 Identities=12% Similarity=0.132 Sum_probs=92.9
Q ss_pred CchHHHHHHhhccCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-------CC----------------------
Q 039523 1 MMPAMKKLWKFQMISQ----LELRSLARSAYNRGEYETSKILREAAMAL-------NS---------------------- 47 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~p---------------------- 47 (244)
|+.-|++++++.|.-. .++..+-.+.++.+++++-...|++.+.. +-
T Consensus 46 Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ 125 (440)
T KOG1464|consen 46 ALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQ 125 (440)
T ss_pred HHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHH
Confidence 5778999999987654 35667778899999999998888877542 10
Q ss_pred -------------CChhHH----HHHHHHHHHccCHHHHHHHHHHHHhcCCC------------cHHHHHHHHHHHHHcC
Q 039523 48 -------------LYPDGW----FALGAAALKARDVEKALDVFTRAVQLDPE------------NGEAWNIIACLHMIKN 98 (244)
Q Consensus 48 -------------~~~~~~----~~la~~~~~~g~~~~A~~~~~~a~~~~p~------------~~~~~~~l~~~~~~~~ 98 (244)
.+...| ..+|.+++..|+|.+-.+.+.+.-+.+.. -..+|..-...|..++
T Consensus 126 ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qK 205 (440)
T KOG1464|consen 126 EFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQK 205 (440)
T ss_pred HHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhc
Confidence 011112 25667777777776665555544332211 1234444456677777
Q ss_pred ChHHHHHHHHHHHhcCCC--CHHH---HHH-HHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523 99 KSKEAFIAFKEALKLKRN--GWQL---WEN-YSHVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 99 ~~~~A~~~~~~a~~~~p~--~~~~---~~~-la~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
+-..-...|++++.+... ++.+ ... -|..+...|+|++|...|-+|++-.
T Consensus 206 nNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 206 NNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 777777778888776432 2221 111 2455677889999988888887654
No 345
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.24 E-value=1.1 Score=32.74 Aligned_cols=72 Identities=18% Similarity=0.158 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 039523 66 VEKALDVFTRAVQLD-PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN----GWQLWENYSHVALDVGNIGQAL 138 (244)
Q Consensus 66 ~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~la~~~~~~~~~~~A~ 138 (244)
-+.|...|.++-... =+++...+.+|..|. ..+.++++..+-+++++.+. ++.++..++.++..+|+++.|-
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 356666665543322 257888888888776 56788999999999988543 4889999999999999999874
No 346
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.21 E-value=3.6 Score=36.07 Aligned_cols=144 Identities=15% Similarity=0.099 Sum_probs=96.5
Q ss_pred CchHHHHHHhh---ccC-CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCC--h----hHHHHHHHHHHHccCHHHH
Q 039523 1 MMPAMKKLWKF---QMI-SQLELRSLARSAY-NRGEYETSKILREAAMALNSLY--P----DGWFALGAAALKARDVEKA 69 (244)
Q Consensus 1 Ai~~~~~al~~---~p~-~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~--~----~~~~~la~~~~~~g~~~~A 69 (244)
||.+++-+++. .|. .+.+.+.+|.+++ ...+++.|..++.+++.+...+ . .+-+.++.++.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 46677777642 221 3567889999887 7899999999999998877542 2 23446678888887777 9
Q ss_pred HHHHHHHHhcCCC---cHHHH-HHH--HHHHHHcCChHHHHHHHHHHHhcC--CCCHHH----HHHHHHHHHHcCCHHHH
Q 039523 70 LDVFTRAVQLDPE---NGEAW-NII--ACLHMIKNKSKEAFIAFKEALKLK--RNGWQL----WENYSHVALDVGNIGQA 137 (244)
Q Consensus 70 ~~~~~~a~~~~p~---~~~~~-~~l--~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~----~~~la~~~~~~~~~~~A 137 (244)
...+++.++...+ ....| +.+ .......+++..|...++.+.... +.++.+ ....+.+....+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 9999998886544 22222 222 222333479999999999888775 344333 22335556666777777
Q ss_pred HHHHHHHH
Q 039523 138 LEAVQMVL 145 (244)
Q Consensus 138 ~~~~~~al 145 (244)
++...++.
T Consensus 199 ~~~l~~~~ 206 (608)
T PF10345_consen 199 LELLQRAI 206 (608)
T ss_pred HHHHHHHH
Confidence 77777663
No 347
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=94.01 E-value=2.8 Score=34.30 Aligned_cols=130 Identities=15% Similarity=0.089 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh--HHHHH--HHHHHHccCHHHHHHHHHHHHhcCCC---cHHHHHHH
Q 039523 18 ELRSLARSAYNRGEYETSKILREAAMALNSLYPD--GWFAL--GAAALKARDVEKALDVFTRAVQLDPE---NGEAWNII 90 (244)
Q Consensus 18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~l--a~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~~l 90 (244)
-....+..++..++|..|...+......-|.... .+..+ |..+...-++.+|.+.+++.....-. ....+..+
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~ 212 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKEL 212 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 3456678889999999999999999986444433 33333 44455678899999999988765321 12222222
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523 91 ACLHMIKNKSKEAFIAFKEALKLKRNGWQL--WENYSHVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~--~~~la~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
..+.................. ..+....+ ++..|.--...|+|+.|...+-+++++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~ 271 (379)
T PF09670_consen 213 VEVLKALESILSALEDKKQRQ-KKLYYALLADLLANAERRAAQGRYDDAVARLYRALELL 271 (379)
T ss_pred HHHHHHHHhhccchhhhhccc-cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 222222222111111111100 00011111 2222333346789999998888887753
No 348
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.92 E-value=0.85 Score=41.58 Aligned_cols=101 Identities=15% Similarity=0.081 Sum_probs=77.0
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHc----C---ChHHHHHHHHHHHhcCCCCHHHHHHH
Q 039523 55 ALGAAALKARDVEKALDVFTRAVQLDPENG---EAWNIIACLHMIK----N---KSKEAFIAFKEALKLKRNGWQLWENY 124 (244)
Q Consensus 55 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~----~---~~~~A~~~~~~a~~~~p~~~~~~~~l 124 (244)
..-.+++..+.|+.|+..|++.-.-.|... ++.+..|.....+ | .+++|+..|++... .|.-+.-|...
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 558 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGK 558 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhH
Confidence 344567778899999999999999888654 5667777665432 2 46777777765433 45566778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCchhhHH
Q 039523 125 SHVALDVGNIGQALEAVQMVLNITNNKRIDTE 156 (244)
Q Consensus 125 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 156 (244)
|.+|..+|++++-+.++.-+++..|+++....
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEISR 590 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCccHH
Confidence 99999999999999999999999999765433
No 349
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.91 E-value=0.53 Score=28.64 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=8.6
Q ss_pred HccCHHHHHHHHHHHHhcCCC
Q 039523 62 KARDVEKALDVFTRAVQLDPE 82 (244)
Q Consensus 62 ~~g~~~~A~~~~~~a~~~~p~ 82 (244)
...+.++|+..+.++++..++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~ 38 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITD 38 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCC
Confidence 333344444444444444333
No 350
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.88 E-value=0.49 Score=34.55 Aligned_cols=78 Identities=18% Similarity=0.129 Sum_probs=58.8
Q ss_pred HHhcCCHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCh
Q 039523 26 AYNRGEYETSKILREAAMALN-SLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPE----NGEAWNIIACLHMIKNKS 100 (244)
Q Consensus 26 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~----~~~~~~~l~~~~~~~~~~ 100 (244)
++..-.-+.|...|.++-... -+++...+.+|..|. ..+.++++..+.+++...+. +++.+..++.++..+|++
T Consensus 116 ~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 116 HWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344434466666666554332 256788888887776 77899999999999987543 588999999999999999
Q ss_pred HHHH
Q 039523 101 KEAF 104 (244)
Q Consensus 101 ~~A~ 104 (244)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9885
No 351
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.87 E-value=3.3 Score=34.39 Aligned_cols=135 Identities=8% Similarity=0.034 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHH-HHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 039523 17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAA-ALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM 95 (244)
Q Consensus 17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 95 (244)
-+|..+-+...+..-...|...|-++-+..-..+.++..-|.+ +...|++.-|...|+-.+...|+++......-..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3444444555556667888888888876553333333333333 456799999999999999999999888888888888
Q ss_pred HcCChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523 96 IKNKSKEAFIAFKEALKLKRNG--WQLWENYSHVALDVGNIGQALEAVQMVLNITNNK 151 (244)
Q Consensus 96 ~~~~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 151 (244)
..++-..|...|++++..-... ...|..+......-|+...+...-++.....|+.
T Consensus 478 ~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 478 RINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 9999999999999887664433 5567777777778899998888888888888874
No 352
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=93.73 E-value=0.91 Score=33.69 Aligned_cols=61 Identities=20% Similarity=0.147 Sum_probs=46.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH
Q 039523 24 RSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENG 84 (244)
Q Consensus 24 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 84 (244)
..+.+.++.++++...+.-++..|.+......+-.++.-.|+|++|...++-+-.+.|+..
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3456677788888888888888888877777777778888888888888888777777653
No 353
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.73 E-value=3.2 Score=33.83 Aligned_cols=136 Identities=14% Similarity=0.143 Sum_probs=95.8
Q ss_pred hcCCH-HHHHHHHHHHHhhCCCChhHHHHHHHHHHH------------ccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 039523 28 NRGEY-ETSKILREAAMALNSLYPDGWFALGAAALK------------ARDVEKALDVFTRAVQLDPENGEAWNIIACLH 94 (244)
Q Consensus 28 ~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~------------~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 94 (244)
..|.+ +.++..-.+.+..+|+...+|...-.++.. ..-.++-+.+...+++.+|++..+|+....++
T Consensus 40 ~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L 119 (421)
T KOG0529|consen 40 EAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVL 119 (421)
T ss_pred hccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 34444 446777777888899887777643333222 22456777888899999999999999999999
Q ss_pred HHcCC--hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 039523 95 MIKNK--SKEAFIAFKEALKLKRNGWQLWENYSHVALDVG----NIGQALEAVQMVLNITNNKRIDTELLERIVL 163 (244)
Q Consensus 95 ~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 163 (244)
.+.+. +..-+..++++++.+|.+..+|..--.+..... ...+-+++..+++..++.+..++..-..++.
T Consensus 120 ~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 120 QKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 88776 477788999999999999888876655554433 2455677788888777765444444444443
No 354
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=93.67 E-value=0.21 Score=24.10 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhcCCCcHHHHH
Q 039523 67 EKALDVFTRAVQLDPENGEAWN 88 (244)
Q Consensus 67 ~~A~~~~~~a~~~~p~~~~~~~ 88 (244)
+.+...|++++...|.++..|.
T Consensus 4 ~~~r~i~e~~l~~~~~~~~~W~ 25 (33)
T smart00386 4 ERARKIYERALEKFPKSVELWL 25 (33)
T ss_pred HHHHHHHHHHHHHCCCChHHHH
Confidence 3334444444444444444333
No 355
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.60 E-value=0.98 Score=39.66 Aligned_cols=60 Identities=10% Similarity=-0.018 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH------HhhC----CCC-hhHHHHHHHHHHHccCHHHHHHHHHHH
Q 039523 17 LELRSLARSAYNRGEYETSKILREAA------MALN----SLY-PDGWFALGAAALKARDVEKALDVFTRA 76 (244)
Q Consensus 17 ~~~~~la~~~~~~~~~~~A~~~~~~a------l~~~----p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 76 (244)
+.|-.-|.+|....++++|+++|++. +++. |.. ...-...|.-+...|+++.|+..|-.+
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea 732 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA 732 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence 34445567777788888888888754 3221 221 122234566677778888887776543
No 356
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=93.42 E-value=1.1 Score=34.31 Aligned_cols=61 Identities=13% Similarity=0.024 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 039523 51 DGWFALGAAALKARDVEKALDVFTRAVQLDPEN------GEAWNIIACLHMIKNKSKEAFIAFKEAL 111 (244)
Q Consensus 51 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 111 (244)
.+...+|.-|+..|++++|.++++.+....... ..+...+..|....|+.+..+.+.-+.+
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 345678888888888888888888886543322 3456677788888888887777665543
No 357
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.33 E-value=0.2 Score=25.81 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=12.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 121 WENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 121 ~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
+..+|.+....++|+.|+.-|++++++
T Consensus 4 ~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 358
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.28 E-value=0.21 Score=25.71 Aligned_cols=29 Identities=10% Similarity=0.413 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039523 85 EAWNIIACLHMIKNKSKEAFIAFKEALKL 113 (244)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 113 (244)
+++..+|.+....++|++|+.-|++++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57889999999999999999999998763
No 359
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.28 E-value=3.4 Score=32.82 Aligned_cols=146 Identities=10% Similarity=-0.041 Sum_probs=85.9
Q ss_pred hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-----------------------CCh--hHHHHHH
Q 039523 3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNS-----------------------LYP--DGWFALG 57 (244)
Q Consensus 3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-----------------------~~~--~~~~~la 57 (244)
+.-..|++++|+-+.++..++..-.. -..+|.+.++++++... .+. .+-..++
T Consensus 205 ~~A~~ALeIN~eCA~AyvLLAEEEa~--Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLA 282 (556)
T KOG3807|consen 205 KAAYQALEINNECATAYVLLAEEEAT--TIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLA 282 (556)
T ss_pred HHHHHHHhcCchhhhHHHhhhhhhhh--hHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHH
Confidence 34457788888888888877754332 24556666666655311 011 2345788
Q ss_pred HHHHHccCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCCHHHHHHHHHHH------
Q 039523 58 AAALKARDVEKALDVFTRAVQLDPEN--GEAWNIIACLHMIKNKSKEAFIAFKEALKL-KRNGWQLWENYSHVA------ 128 (244)
Q Consensus 58 ~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~la~~~------ 128 (244)
.|..+.|+..+|++.++...+..|-. ..++-++-..+....-|.+....+.+.-.+ .|.+....+.-+.+-
T Consensus 283 MCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK~RAVa~ 362 (556)
T KOG3807|consen 283 MCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTRAVSE 362 (556)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHh
Confidence 88999999999999998888877722 234445555555555555554444433332 244433333222221
Q ss_pred -------HHcCC---HHHHHHHHHHHHhhcCC
Q 039523 129 -------LDVGN---IGQALEAVQMVLNITNN 150 (244)
Q Consensus 129 -------~~~~~---~~~A~~~~~~al~~~p~ 150 (244)
.+.|- -..|++.+.++++.+|.
T Consensus 363 kFspd~asrRGLS~AE~~AvEAihRAvEFNPH 394 (556)
T KOG3807|consen 363 KFSPETASRRGLSTAEINAVEAIHRAVEFNPH 394 (556)
T ss_pred hcCchhhhhccccHHHHHHHHHHHHHhhcCCC
Confidence 11221 23578888999998887
No 360
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=93.15 E-value=0.33 Score=23.36 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHhhCCCChhHHHHHHHH
Q 039523 30 GEYETSKILREAAMALNSLYPDGWFALGAA 59 (244)
Q Consensus 30 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 59 (244)
|+.+.+...|++++...|.++..|..++..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888999999999999889888877654
No 361
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=0.22 Score=39.33 Aligned_cols=104 Identities=15% Similarity=0.051 Sum_probs=57.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCC----------C---------hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523 21 SLARSAYNRGEYETSKILREAAMALNSL----------Y---------PDGWFALGAAALKARDVEKALDVFTRAVQLDP 81 (244)
Q Consensus 21 ~la~~~~~~~~~~~A~~~~~~al~~~p~----------~---------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 81 (244)
..+...+..++++.|..-|.+++..-.. + .....+++.+-+..+.+..|......++..++
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~ 306 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDER 306 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccCh
Confidence 4466688889999999888888764220 0 01223344444455555555555444444445
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 039523 82 ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENY 124 (244)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 124 (244)
....+++..+..+....++++|.+.++.+....|++......+
T Consensus 307 s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~ 349 (372)
T KOG0546|consen 307 SKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEEL 349 (372)
T ss_pred hhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHH
Confidence 5555555555555555555555555555555555554443333
No 362
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=92.99 E-value=0.94 Score=33.61 Aligned_cols=63 Identities=13% Similarity=0.156 Sum_probs=55.2
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH
Q 039523 56 LGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGW 118 (244)
Q Consensus 56 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 118 (244)
...-+++.+..++++...+.-++..|.+......+-.+++-.|+|++|...++-+-.+.|++.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 345577888999999999999999999999999999999999999999999999999988763
No 363
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.91 E-value=0.74 Score=35.67 Aligned_cols=59 Identities=17% Similarity=0.047 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523 87 WNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVL 145 (244)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 145 (244)
....+..+...|.+.+|+.+.++++.++|-+...+..+..++...|+--.+..+|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34456778899999999999999999999999999999999999999888888887654
No 364
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.88 E-value=6.9 Score=35.24 Aligned_cols=101 Identities=15% Similarity=0.036 Sum_probs=76.7
Q ss_pred ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--c-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--
Q 039523 49 YPDGWFALGAAALKARDVEKALDVFTRAVQLDPE--N-------GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG-- 117 (244)
Q Consensus 49 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-- 117 (244)
+|......+.......++++|..+..++-..-|. . ...-...|.+....|+.++|.+..+.++..-|.+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 3444556677777888999999988887665443 1 2233445778888999999999999999887754
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 039523 118 ---WQLWENYSHVALDVGNIGQALEAVQMVLNITN 149 (244)
Q Consensus 118 ---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 149 (244)
..+...+|.+..-.|++.+|..+...+.+...
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~ 528 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMAR 528 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999888877643
No 365
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=92.55 E-value=4.5 Score=32.22 Aligned_cols=121 Identities=13% Similarity=0.092 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-------------
Q 039523 15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP------------- 81 (244)
Q Consensus 15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p------------- 81 (244)
..+.-+.+-+..++..+...-+.....+++++|+.+.++..++.- ..--..+|.+.++++++...
T Consensus 183 ~~r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~ 260 (556)
T KOG3807|consen 183 FLRPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQS 260 (556)
T ss_pred ccChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhc
Confidence 334445556666777888888899999999999998888777653 23345667777776665321
Q ss_pred ----------CcHHH--HHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHH
Q 039523 82 ----------ENGEA--WNIIACLHMIKNKSKEAFIAFKEALKLKRNG--WQLWENYSHVALDVGNIGQA 137 (244)
Q Consensus 82 ----------~~~~~--~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~~~~~~A 137 (244)
.+..+ ...++.|..++|+..+|++.++...+-.|-. ..+..++...+....-|.+.
T Consensus 261 ~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADv 330 (556)
T KOG3807|consen 261 PQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADV 330 (556)
T ss_pred cchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122 3457888889999999999998887766622 22344455555544444433
No 366
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=92.53 E-value=0.82 Score=24.42 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=17.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523 122 ENYSHVALDVGNIGQALEAVQMVLN 146 (244)
Q Consensus 122 ~~la~~~~~~~~~~~A~~~~~~al~ 146 (244)
+.+|..|...|+.+.|...+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4566777777777777777777764
No 367
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.44 E-value=3.8 Score=35.27 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=27.9
Q ss_pred HHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 039523 61 LKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALK 112 (244)
Q Consensus 61 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 112 (244)
.+.|+++.|.+...++ ++..-|-.+|.+....+++..|.+++.++..
T Consensus 648 l~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 4566666665544332 3455566666666666666666666666543
No 368
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.38 E-value=0.87 Score=35.28 Aligned_cols=58 Identities=17% Similarity=0.156 Sum_probs=51.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 039523 53 WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEA 110 (244)
Q Consensus 53 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 110 (244)
+...+..|...|.+.+|.++.++++..+|-+...+..+-.++...|+--.+.+.|++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4456777889999999999999999999999999999999999999988888888764
No 369
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=92.33 E-value=0.38 Score=39.29 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH-------h-hCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523 18 ELRSLARSAYNRGEYETSKILREAAM-------A-LNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78 (244)
Q Consensus 18 ~~~~la~~~~~~~~~~~A~~~~~~al-------~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 78 (244)
+...+.+++.-.|+|..|++.++-.- . ..+-+...++.+|.+|+.+++|.+|++.|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888999999998866431 1 1223456788999999999999999999987763
No 370
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.26 E-value=2.9 Score=41.52 Aligned_cols=133 Identities=14% Similarity=0.001 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CC----------
Q 039523 14 ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD-PE---------- 82 (244)
Q Consensus 14 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-p~---------- 82 (244)
...+.|...|++....|.++.|....-.|.+.. -+.+....|......|+-..|+..+++.+..+ |+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 457899999999999999999999998888777 56778889999999999999999999998653 22
Q ss_pred c------HHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcCCCCHHHHHHHHHHHH------------HcCCHHH---HHH
Q 039523 83 N------GEAWNIIACLHMIKNKS--KEAFIAFKEALKLKRNGWQLWENYSHVAL------------DVGNIGQ---ALE 139 (244)
Q Consensus 83 ~------~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~~~p~~~~~~~~la~~~~------------~~~~~~~---A~~ 139 (244)
. ..+...++......|++ .+-++.|..+.++.|.....++.+|..|. +.|++.. ++.
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~ 1825 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIY 1825 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHH
Confidence 1 12344445555555553 45677888999998876666666664432 2344444 455
Q ss_pred HHHHHHhhc
Q 039523 140 AVQMVLNIT 148 (244)
Q Consensus 140 ~~~~al~~~ 148 (244)
.|.+++...
T Consensus 1826 ~~~~sl~yg 1834 (2382)
T KOG0890|consen 1826 FFGRALYYG 1834 (2382)
T ss_pred HHHHHHHhc
Confidence 555666554
No 371
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=91.91 E-value=1.8 Score=35.49 Aligned_cols=60 Identities=13% Similarity=0.121 Sum_probs=47.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH--------hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 039523 53 WFALGAAALKARDVEKALDVFTRAV--------QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALK 112 (244)
Q Consensus 53 ~~~la~~~~~~g~~~~A~~~~~~a~--------~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 112 (244)
...+..++.-.|+|..|++.++..- +..+.....++..|-+|..+++|.+|++.|...+-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888999999999887531 12334567889999999999999999999987754
No 372
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.77 E-value=15 Score=37.08 Aligned_cols=101 Identities=15% Similarity=0.070 Sum_probs=78.9
Q ss_pred CChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CC----------
Q 039523 48 LYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK-RN---------- 116 (244)
Q Consensus 48 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~---------- 116 (244)
.....|...|.+.+..|+++.|...+-++.+.. -+.++...|..+...|+...|+..+++.+..+ |+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 346799999999999999999999998888776 67888999999999999999999999999653 22
Q ss_pred C------HHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhcCC
Q 039523 117 G------WQLWENYSHVALDVGNIG--QALEAVQMVLNITNN 150 (244)
Q Consensus 117 ~------~~~~~~la~~~~~~~~~~--~A~~~~~~al~~~p~ 150 (244)
. ..+...++......|+++ .-+.+|..+..+.|.
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence 1 123344445555556543 456789999999885
No 373
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.75 E-value=0.54 Score=25.12 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 039523 20 RSLARSAYNRGEYETSKILREAAMA 44 (244)
Q Consensus 20 ~~la~~~~~~~~~~~A~~~~~~al~ 44 (244)
+.+|..|..+|+.+.|...+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4566666777777777776666663
No 374
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.43 E-value=4 Score=29.30 Aligned_cols=110 Identities=9% Similarity=0.005 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh-----HHHHHHHHHHHccCHHHHHHHHHHHH-hcCCCcHHHHHHH
Q 039523 17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPD-----GWFALGAAALKARDVEKALDVFTRAV-QLDPENGEAWNII 90 (244)
Q Consensus 17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~a~-~~~p~~~~~~~~l 90 (244)
-+.+..|.+..+.|+-..|+..|.++-...| .|. +...-+.++...|.|+.-..-.+..- ..+|-...+.-.+
T Consensus 95 LA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEAL 173 (221)
T COG4649 95 LARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREAL 173 (221)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHH
Confidence 3456778888899999999999999877665 332 44556777888999998776665433 2345556778889
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 039523 91 ACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVA 128 (244)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 128 (244)
|...++.|++..|...|..... +...+....+.+.+.
T Consensus 174 glAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m 210 (221)
T COG4649 174 GLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM 210 (221)
T ss_pred hHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence 9999999999999999988776 444455555555443
No 375
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.38 E-value=11 Score=34.12 Aligned_cols=119 Identities=15% Similarity=0.030 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--C-------hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc--
Q 039523 15 SQLELRSLARSAYNRGEYETSKILREAAMALNSL--Y-------PDGWFALGAAALKARDVEKALDVFTRAVQLDPEN-- 83 (244)
Q Consensus 15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-- 83 (244)
+|......+.......++++|.....++...-+. . ....-..|.+....|++++|.+..+.++..-|.+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 5667777888888999999999998888765443 1 2234456778889999999999999999877754
Q ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC----CCH--HHHHHHHHHHHHcCC
Q 039523 84 ---GEAWNIIACLHMIKNKSKEAFIAFKEALKLKR----NGW--QLWENYSHVALDVGN 133 (244)
Q Consensus 84 ---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p----~~~--~~~~~la~~~~~~~~ 133 (244)
..+...+|.+..-.|++++|..+...+.+... ... .+....+.++..+|+
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH
Confidence 34677889999999999999999988877732 222 233445777888883
No 376
>PF12854 PPR_1: PPR repeat
Probab=91.21 E-value=0.78 Score=22.81 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=15.2
Q ss_pred ChhHHHHHHHHHHHccCHHHHHHHHHH
Q 039523 49 YPDGWFALGAAALKARDVEKALDVFTR 75 (244)
Q Consensus 49 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 75 (244)
+...|..+...+.+.|+.++|.+.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 444555555566666666666655543
No 377
>PF12854 PPR_1: PPR repeat
Probab=90.81 E-value=0.9 Score=22.57 Aligned_cols=27 Identities=22% Similarity=0.205 Sum_probs=17.4
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHH
Q 039523 83 NGEAWNIIACLHMIKNKSKEAFIAFKE 109 (244)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~ 109 (244)
+...|..+...+.+.|+.++|.+.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 445566666667777777777766654
No 378
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=90.58 E-value=4.1 Score=31.15 Aligned_cols=61 Identities=13% Similarity=-0.009 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523 85 EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG------WQLWENYSHVALDVGNIGQALEAVQMVL 145 (244)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al 145 (244)
.....+|.-+...|++++|.++|+.+....... ..++..+..|+...|+.+..+...-+.+
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 455678999999999999999999996654322 4567788899999999998877655443
No 379
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.16 E-value=11 Score=32.07 Aligned_cols=144 Identities=12% Similarity=0.021 Sum_probs=80.4
Q ss_pred cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 039523 13 MISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIAC 92 (244)
Q Consensus 13 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 92 (244)
|-+-..+..+-.++.+..++.-....+.+.+.... +..+++.++.+|... ..++-....++.++.+-++...-..++.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 33444444444555555555555556666665543 556666777777666 3345555666666666665555555555
Q ss_pred HHHHcCChHHHHHHHHHHHhcC--------------------CCCHH-------------------H-HHHHHHHHHHcC
Q 039523 93 LHMIKNKSKEAFIAFKEALKLK--------------------RNGWQ-------------------L-WENYSHVALDVG 132 (244)
Q Consensus 93 ~~~~~~~~~~A~~~~~~a~~~~--------------------p~~~~-------------------~-~~~la~~~~~~~ 132 (244)
.|.+ ++-..+..+|.+++... |++.. + +..+-.-|....
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 5544 55556666665554321 12111 1 111112344566
Q ss_pred CHHHHHHHHHHHHhhcCCchhhHHHHH
Q 039523 133 NIGQALEAVQMVLNITNNKRIDTELLE 159 (244)
Q Consensus 133 ~~~~A~~~~~~al~~~p~~~~~~~~l~ 159 (244)
++.+|++.+.-.++++..+.++...+-
T Consensus 220 N~~eai~Ilk~il~~d~k~~~ar~~~i 246 (711)
T COG1747 220 NWTEAIRILKHILEHDEKDVWARKEII 246 (711)
T ss_pred CHHHHHHHHHHHhhhcchhhhHHHHHH
Confidence 888999999988888877655544443
No 380
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.11 E-value=11 Score=32.06 Aligned_cols=67 Identities=10% Similarity=0.046 Sum_probs=44.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhc---CCC----CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhcCCchh
Q 039523 87 WNIIACLHMIKNKSKEAFIAFKEALKL---KRN----GWQLWENYSHVALDVGN-IGQALEAVQMVLNITNNKRI 153 (244)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~----~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~ 153 (244)
++.+|.++..+|+...|..+|..+++. ..+ .|.+++.+|..+..+|. ..++..++.+|-+...+...
T Consensus 452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~l 526 (546)
T KOG3783|consen 452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYEL 526 (546)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccch
Confidence 345667777777777777777666532 111 25667777777777777 77777777777776655443
No 381
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=89.37 E-value=8.7 Score=29.89 Aligned_cols=113 Identities=11% Similarity=0.044 Sum_probs=69.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCC--ChhHHHHHHHH---HHHccC----HHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 039523 23 ARSAYNRGEYETSKILREAAMALNSL--YPDGWFALGAA---ALKARD----VEKALDVFTRAVQLDPENGEAWNIIACL 93 (244)
Q Consensus 23 a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~---~~~~g~----~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 93 (244)
.+.+...++|++--..+.+......+ .....+..+.. ...... ...-...++..++..|++..++..+|..
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 35567788888888888777654322 11111111111 111111 1246777888889999999888888876
Q ss_pred HHHc------CC----------------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 039523 94 HMIK------NK----------------SKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIG 135 (244)
Q Consensus 94 ~~~~------~~----------------~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~ 135 (244)
+... +. .+.|...+.+++.++|....+...+..+....|...
T Consensus 87 ~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 87 WVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 6421 11 256667777777778877777777777666666554
No 382
>PF13041 PPR_2: PPR repeat family
Probab=89.28 E-value=2.3 Score=23.09 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523 52 GWFALGAAALKARDVEKALDVFTRAVQ 78 (244)
Q Consensus 52 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 78 (244)
.|..+-..+.+.|++++|.+.|++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344444455555555555555554443
No 383
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=89.16 E-value=6 Score=32.20 Aligned_cols=46 Identities=13% Similarity=-0.109 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHH
Q 039523 30 GEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTR 75 (244)
Q Consensus 30 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 75 (244)
+..-+|+..++.++...|.+......+..+|...|-.+.|.+.|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4466678888888888888888888888888888888888888864
No 384
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.04 E-value=5.1 Score=32.74 Aligned_cols=96 Identities=13% Similarity=0.016 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--------CcH
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQLDP--------ENG 84 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--------~~~ 84 (244)
-.++..+|..|...|+.+.|+++|-++-...... ...|.++..+-...|+|..-..+..++.+.-. -.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 3577889999999999999999999976655432 45677888888888998887777777765410 012
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 039523 85 EAWNIIACLHMIKNKSKEAFIAFKEAL 111 (244)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 111 (244)
......|.+....++|..|..+|-.+.
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344556667777779999988886553
No 385
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.89 E-value=6 Score=34.14 Aligned_cols=31 Identities=35% Similarity=0.416 Sum_probs=21.1
Q ss_pred CChhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523 48 LYPDGWFALGAAALKARDVEKALDVFTRAVQ 78 (244)
Q Consensus 48 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 78 (244)
++..=|..||...+..|++..|.+++.++..
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 3455567777777777777777777776643
No 386
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=88.69 E-value=3 Score=28.82 Aligned_cols=49 Identities=29% Similarity=0.217 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 039523 51 DGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK 99 (244)
Q Consensus 51 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 99 (244)
......+...+..|++.-|.++.+.++..+|++..+....+.++..+|.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3344445555566666666666666666666666666666666555543
No 387
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=88.68 E-value=9.5 Score=33.69 Aligned_cols=27 Identities=11% Similarity=0.103 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAA 42 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~a 42 (244)
..++..+|..+..+.+|+.|.++|...
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467778888888888888888777654
No 388
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.67 E-value=3.9 Score=24.97 Aligned_cols=59 Identities=12% Similarity=-0.007 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHH---HHHHHHHHccCHHHHHHHHHH
Q 039523 17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWF---ALGAAALKARDVEKALDVFTR 75 (244)
Q Consensus 17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~---~la~~~~~~g~~~~A~~~~~~ 75 (244)
.-....|.-++...+.++|+..++++++..++.+.-+. .+..++...|+|.+.+.+-.+
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778999999999999999999888776554 445567777888877776543
No 389
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.56 E-value=4.5 Score=33.02 Aligned_cols=95 Identities=12% Similarity=-0.001 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--------CCHH
Q 039523 51 DGWFALGAAALKARDVEKALDVFTRAVQLDPE---NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR--------NGWQ 119 (244)
Q Consensus 51 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--------~~~~ 119 (244)
.++..+|.-|...|+++.|+++|.++-...-. ....+.++-.+....|+|..-..+..++.+... -.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 36778999999999999999999996655433 345677788888888998777777666655410 0123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523 120 LWENYSHVALDVGNIGQALEAVQMVL 145 (244)
Q Consensus 120 ~~~~la~~~~~~~~~~~A~~~~~~al 145 (244)
+....|.+...+++|+.|..+|-.+.
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44455666666778888888876654
No 390
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.42 E-value=17 Score=31.99 Aligned_cols=116 Identities=17% Similarity=0.174 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhhCCCC----hhHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCC--cH----HHHHHHHHHHHHcCCh
Q 039523 32 YETSKILREAAMALNSLY----PDGWFALGAAAL-KARDVEKALDVFTRAVQLDPE--NG----EAWNIIACLHMIKNKS 100 (244)
Q Consensus 32 ~~~A~~~~~~al~~~p~~----~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~p~--~~----~~~~~l~~~~~~~~~~ 100 (244)
...|+.+++-+++..+-. ..+...+|.+++ ...+++.|..++++++.+... .. .+.+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 344677777777433222 347788999988 789999999999999887643 22 2345667888888887
Q ss_pred HHHHHHHHHHHhcCCC----CHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhc
Q 039523 101 KEAFIAFKEALKLKRN----GWQLWENYS--HVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 101 ~~A~~~~~~a~~~~p~----~~~~~~~la--~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
. |...+++.++...+ .+...+.+- ......+++..|.+.++......
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 7 99999998887544 222222332 22223379999999999988775
No 391
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=88.32 E-value=1 Score=21.21 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=12.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q 039523 53 WFALGAAALKARDVEKALDVFTRAV 77 (244)
Q Consensus 53 ~~~la~~~~~~g~~~~A~~~~~~a~ 77 (244)
|..+-..+.+.|++++|.+.+++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3444455555555555555555443
No 392
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.92 E-value=17 Score=31.36 Aligned_cols=128 Identities=15% Similarity=0.004 Sum_probs=86.1
Q ss_pred cCCHHHHHHHHHHHHhh------------CCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc---------C-------
Q 039523 29 RGEYETSKILREAAMAL------------NSLYPDGWFALGAAALKARDVEKALDVFTRAVQL---------D------- 80 (244)
Q Consensus 29 ~~~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---------~------- 80 (244)
...|++|...|.-+... .|-+...+..++.++...|+.+-|.....+++=. .
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34577777777766553 3556678899999999999999888877776531 1
Q ss_pred -----CCcHHHH---HHHHHHHHHcCChHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHH-----H
Q 039523 81 -----PENGEAW---NIIACLHMIKNKSKEAFIAFKEALKLKRN-GWQLWENYSHVAL-DVGNIGQALEAVQMV-----L 145 (244)
Q Consensus 81 -----p~~~~~~---~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~la~~~~-~~~~~~~A~~~~~~a-----l 145 (244)
|.|...| +..-..+.+.|.+..|.++++-.++++|. ++.+...+..+|. ...+|+--+..++.. +
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 2222322 33334567889999999999999999998 7777666666554 445666666655544 3
Q ss_pred hhcCCchhhHH
Q 039523 146 NITNNKRIDTE 156 (244)
Q Consensus 146 ~~~p~~~~~~~ 156 (244)
..-|+-++..+
T Consensus 411 ~~~PN~~yS~A 421 (665)
T KOG2422|consen 411 SQLPNFGYSLA 421 (665)
T ss_pred hhcCCchHHHH
Confidence 44566444333
No 393
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=87.24 E-value=3.1 Score=28.07 Aligned_cols=44 Identities=9% Similarity=0.046 Sum_probs=30.3
Q ss_pred HHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 039523 68 KALDVFTRAVQ--LDPENGEAWNIIACLHMIKNKSKEAFIAFKEAL 111 (244)
Q Consensus 68 ~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 111 (244)
.+.+.|..+.. +.-..+..|...|..+...|++++|.+.|+.++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 66666665544 455667777778888888888888888877664
No 394
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=86.55 E-value=2.2 Score=32.12 Aligned_cols=94 Identities=15% Similarity=0.098 Sum_probs=56.7
Q ss_pred HHHHccCHHHHHHHHHHHHhcCCCcH------------HHHHHHHHHHHHcCChH-HH-HHHHHHHHhc--CCCC--HHH
Q 039523 59 AALKARDVEKALDVFTRAVQLDPENG------------EAWNIIACLHMIKNKSK-EA-FIAFKEALKL--KRNG--WQL 120 (244)
Q Consensus 59 ~~~~~g~~~~A~~~~~~a~~~~p~~~------------~~~~~l~~~~~~~~~~~-~A-~~~~~~a~~~--~p~~--~~~ 120 (244)
-.+..|+++.|++....++..+-.-| +-....+......|+.- -+ ...+...... -|+. ...
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl 171 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKL 171 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHH
Confidence 34678999999999999998752222 12233444455555521 11 1112222111 1222 344
Q ss_pred HHHHHHHHH---------HcCCHHHHHHHHHHHHhhcCCch
Q 039523 121 WENYSHVAL---------DVGNIGQALEAVQMVLNITNNKR 152 (244)
Q Consensus 121 ~~~la~~~~---------~~~~~~~A~~~~~~al~~~p~~~ 152 (244)
+...|..+. ..++...|..++++|+.++|+.+
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 556677663 45678899999999999999855
No 395
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.36 E-value=8.7 Score=29.79 Aligned_cols=86 Identities=12% Similarity=0.040 Sum_probs=39.1
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhCCCChhHHHHHHHHH------HHccCHHHHHHHHHHH
Q 039523 5 MKKLWKFQMISQLELRSLARSAYNR--GEYETSKILREAAMALNSLYPDGWFALGAAA------LKARDVEKALDVFTRA 76 (244)
Q Consensus 5 ~~~al~~~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~~------~~~g~~~~A~~~~~~a 76 (244)
...+++.+|.+-.+|...-.++... .++..-....++.+..++.|-.+|...-.+. ..-..+....++-..+
T Consensus 97 ~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~ 176 (328)
T COG5536 97 LDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSL 176 (328)
T ss_pred HHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHH
Confidence 3444455555555555444444332 4455555555555555555544443221111 2222233334444445
Q ss_pred HhcCCCcHHHHHHH
Q 039523 77 VQLDPENGEAWNII 90 (244)
Q Consensus 77 ~~~~p~~~~~~~~l 90 (244)
+..++.+..+|...
T Consensus 177 I~tdi~N~SaW~~r 190 (328)
T COG5536 177 IETDIYNNSAWHHR 190 (328)
T ss_pred HhhCCCChHHHHHH
Confidence 55555555555444
No 396
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=86.30 E-value=7.8 Score=34.46 Aligned_cols=111 Identities=14% Similarity=0.050 Sum_probs=63.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh------------------------CCC-ChhHHHHHHHHHHHccCHHHHHHHHHH
Q 039523 21 SLARSAYNRGEYETSKILREAAMAL------------------------NSL-YPDGWFALGAAALKARDVEKALDVFTR 75 (244)
Q Consensus 21 ~la~~~~~~~~~~~A~~~~~~al~~------------------------~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 75 (244)
..|..+...|+++.|+..|-++-.. +.+ ....+-.++.-|...|+|+-|.++|.+
T Consensus 711 ~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 711 AWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred HHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHh
Confidence 4466777788888887766544211 000 112344566777778888888887765
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 039523 76 AVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG-WQLWENYSHVALDVGNIGQALEAV 141 (244)
Q Consensus 76 a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~ 141 (244)
+-. .......|.+.|+|++|.+.-.+... |.. ...+...+.-.-..|+|.+|.+.|
T Consensus 791 ~~~--------~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 791 ADL--------FKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred cch--------hHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 422 22334556777888888777665533 222 233444454455555555554433
No 397
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=85.98 E-value=4 Score=28.18 Aligned_cols=52 Identities=6% Similarity=-0.122 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 039523 83 NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNI 134 (244)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~ 134 (244)
..+.....+.-....|++..|..+...++..+|++..+....+.++..+|.-
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 3455667777888999999999999999999999999998889888877643
No 398
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=85.77 E-value=5.9 Score=34.53 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=20.4
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039523 94 HMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQM 143 (244)
Q Consensus 94 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 143 (244)
+...++|.+|....++.-+.-| .+++..|..+....++++|...|.+
T Consensus 783 Hve~~~W~eAFalAe~hPe~~~---dVy~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 783 HVETQRWDEAFALAEKHPEFKD---DVYMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred eeecccchHhHhhhhhCccccc---cccchHHHHhhhhhhHHHHHHHHHH
Confidence 4445555555554444333222 2334444444444444444444443
No 399
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=85.70 E-value=2.5 Score=20.32 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=14.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523 53 WFALGAAALKARDVEKALDVFTRAVQ 78 (244)
Q Consensus 53 ~~~la~~~~~~g~~~~A~~~~~~a~~ 78 (244)
|..+...+.+.|++++|.+.|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455555666666666666655443
No 400
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=85.69 E-value=3.9 Score=33.27 Aligned_cols=42 Identities=12% Similarity=-0.136 Sum_probs=38.0
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAA 42 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 42 (244)
|+.+++.++..+|.+......+.++|...|-...|...|...
T Consensus 202 Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 202 AIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 466788899999999999999999999999999999998765
No 401
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=85.60 E-value=9.1 Score=26.20 Aligned_cols=54 Identities=19% Similarity=0.079 Sum_probs=30.2
Q ss_pred HHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039523 60 ALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL 113 (244)
Q Consensus 60 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 113 (244)
....|+-+.-.+.+....+-+..+|..+..+|.+|.+.|+..++-+.+.+|-+.
T Consensus 96 lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 96 LVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344555555555566655555556777777777777777777777777766554
No 402
>PF13041 PPR_2: PPR repeat family
Probab=85.59 E-value=4.1 Score=22.04 Aligned_cols=44 Identities=11% Similarity=0.043 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChhHHHHHHH
Q 039523 15 SQLELRSLARSAYNRGEYETSKILREAAMALN-SLYPDGWFALGA 58 (244)
Q Consensus 15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~ 58 (244)
+...|..+-..+.+.|++++|.+.|++..+.. +-+...+..+..
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~ 46 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILIN 46 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45678888899999999999999999999864 224444444433
No 403
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=85.50 E-value=3.8 Score=29.88 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 039523 70 LDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR 115 (244)
Q Consensus 70 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 115 (244)
.+..++.++..| ++.++.+++.++...|+.++|.....++....|
T Consensus 131 ~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 131 IEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344445555555 555566666666666666666666666666666
No 404
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.46 E-value=11 Score=29.25 Aligned_cols=121 Identities=7% Similarity=0.067 Sum_probs=79.2
Q ss_pred cCCHHHHHHHHHHHHhhCCCCh----hHHHHHHHHHHHccCHHHHHHHHHHHHhc-------CC----------------
Q 039523 29 RGEYETSKILREAAMALNSLYP----DGWFALGAAALKARDVEKALDVFTRAVQL-------DP---------------- 81 (244)
Q Consensus 29 ~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~-------~p---------------- 81 (244)
..+.++|+..|.+.+++.++-. .++..+..+.++.|++++-.+.|.+.+.. +-
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 4589999999999999988654 36778888999999999998888866532 10
Q ss_pred -------------------CcHHHH----HHHHHHHHHcCChHHHHHHHHHHHhcCCC------------CHHHHHHHHH
Q 039523 82 -------------------ENGEAW----NIIACLHMIKNKSKEAFIAFKEALKLKRN------------GWQLWENYSH 126 (244)
Q Consensus 82 -------------------~~~~~~----~~l~~~~~~~~~~~~A~~~~~~a~~~~p~------------~~~~~~~la~ 126 (244)
.+...| ..+|.+++..|.|..-.+.+++......+ -..++..-..
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 001112 23566666666666655555544332110 1234444456
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcC
Q 039523 127 VALDVGNIGQALEAVQMVLNITN 149 (244)
Q Consensus 127 ~~~~~~~~~~A~~~~~~al~~~p 149 (244)
.|..+.+-..-...|++++.+..
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKS 222 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKS 222 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhc
Confidence 77777777777788888887643
No 405
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=85.16 E-value=15 Score=28.29 Aligned_cols=92 Identities=15% Similarity=0.015 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCChhHHHHHHHHHHHccCHH-HHHHHHHHHHhcC------CCc
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMAL-----NSLYPDGWFALGAAALKARDVE-KALDVFTRAVQLD------PEN 83 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~------p~~ 83 (244)
.+.++.=+..+.+.|++..|.+...-.++. .+.+......++.+....+.-+ +-.+..+++++.. -.+
T Consensus 10 idLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gd 89 (260)
T PF04190_consen 10 IDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGD 89 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCC
Confidence 345666677888888888777665554443 2334444456666666655333 4455556666543 145
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHH
Q 039523 84 GEAWNIIACLHMIKNKSKEAFIAF 107 (244)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~ 107 (244)
+..+..+|..+.+.|++.+|..+|
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHH
Confidence 778888888888888888887665
No 406
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.35 E-value=17 Score=28.23 Aligned_cols=133 Identities=10% Similarity=0.055 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHc--cCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH------HHcCChHHH
Q 039523 32 YETSKILREAAMALNSLYPDGWFALGAAALKA--RDVEKALDVFTRAVQLDPENGEAWNIIACLH------MIKNKSKEA 103 (244)
Q Consensus 32 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~------~~~~~~~~A 103 (244)
.+.-+.++..+++.+|.+-.+|...-.++..- .++..-....++.+..++.|-.+|...-.++ .....+..-
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e 169 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE 169 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence 55667889999999999999998877776655 6677777888899999999988776544333 233334444
Q ss_pred HHHHHHHHhcCCCCHHHHHHH---HHHHHHcCC------HHHHHHHHHHHHhhcCCchhhHHHHHHHHHH
Q 039523 104 FIAFKEALKLKRNGWQLWENY---SHVALDVGN------IGQALEAVQMVLNITNNKRIDTELLERIVLN 164 (244)
Q Consensus 104 ~~~~~~a~~~~p~~~~~~~~l---a~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 164 (244)
.++-..++..++.+..+|... .......|+ +++-+++...++-.+|++...+..+....+.
T Consensus 170 ~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~ 239 (328)
T COG5536 170 LEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSE 239 (328)
T ss_pred HHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhcc
Confidence 566667788899998888776 333334554 3444556666666778866555555544443
No 407
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=83.92 E-value=1.1 Score=35.66 Aligned_cols=79 Identities=14% Similarity=0.112 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039523 18 ELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI 96 (244)
Q Consensus 18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 96 (244)
....++.+-+..+.+..|+.....++..++....+++..+..+....++++|.+.+..+....|++....-.+..+-..
T Consensus 277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred cccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 4455778888889999999888888888888899999999999999999999999999999999988766555444433
No 408
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=83.89 E-value=9.2 Score=27.86 Aligned_cols=50 Identities=8% Similarity=0.056 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523 101 KEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK 151 (244)
Q Consensus 101 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 151 (244)
+..++..++.++..| ++.++..++.++...|+.++|.+...++..+.|.+
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 344555667777777 57889999999999999999999999999999953
No 409
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.01 E-value=32 Score=29.46 Aligned_cols=136 Identities=15% Similarity=0.001 Sum_probs=90.1
Q ss_pred cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC------------
Q 039523 13 MISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD------------ 80 (244)
Q Consensus 13 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------------ 80 (244)
.++-.+++.++.+|... ..++-...+++..+.+-++...-..++..|.+ ++-+++..+|.+++-..
T Consensus 96 ~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~ev 173 (711)
T COG1747 96 GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEV 173 (711)
T ss_pred cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHH
Confidence 45667888889998888 55667778888888887777777777777766 77777777777765431
Q ss_pred --------CCcHHHHHH--------------------HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--
Q 039523 81 --------PENGEAWNI--------------------IACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD-- 130 (244)
Q Consensus 81 --------p~~~~~~~~--------------------l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~-- 130 (244)
|++.+..+. .-.-|....++.+|+..+...++.+..+..+..++...+..
T Consensus 174 WeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y 253 (711)
T COG1747 174 WEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKY 253 (711)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHh
Confidence 222221111 11223456778899999998888888877776666555544
Q ss_pred ------------------cCCHHHHHHHHHHHHhhcCC
Q 039523 131 ------------------VGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 131 ------------------~~~~~~A~~~~~~al~~~p~ 150 (244)
-.++..+..-|++.+..+.+
T Consensus 254 ~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eG 291 (711)
T COG1747 254 RGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEG 291 (711)
T ss_pred ccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccC
Confidence 33455566666666655444
No 410
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=81.59 E-value=41 Score=30.46 Aligned_cols=117 Identities=18% Similarity=0.118 Sum_probs=79.1
Q ss_pred CCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH---HcCChHHHHHH
Q 039523 30 GEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM---IKNKSKEAFIA 106 (244)
Q Consensus 30 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~---~~~~~~~A~~~ 106 (244)
+.-+.-+..++.-+.+++.+......|..++...|++++-...-.++..+.|..+..|.....-.. ..+...++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 444555666777777777777777888888888888888877777778888888888776654332 23556677777
Q ss_pred HHHHHhcCCCCHHHHHHHHHHH-------HHcCCHHHHHHHHHHHHhh
Q 039523 107 FKEALKLKRNGWQLWENYSHVA-------LDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 107 ~~~a~~~~p~~~~~~~~la~~~-------~~~~~~~~A~~~~~~al~~ 147 (244)
|++++.-. +++..|...+... ...++++.....|.++++-
T Consensus 173 ~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 173 FEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRS 219 (881)
T ss_pred HHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhh
Confidence 77777643 3444454444433 3446677778888888764
No 411
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=81.16 E-value=19 Score=26.27 Aligned_cols=112 Identities=17% Similarity=0.126 Sum_probs=76.4
Q ss_pred cCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH-----ccCHHHHHHHHHHHHhcCCCcHHH
Q 039523 13 MISQLELRSLARSAY-NRGEYETSKILREAAMALNSLYPDGWFALGAAALK-----ARDVEKALDVFTRAVQLDPENGEA 86 (244)
Q Consensus 13 p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~a~~~~p~~~~~ 86 (244)
...|+.-..||..+. -+.+|++|...|+.--..+. .+...+.+|..++. .++...|++.+..+.. .+++.+
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~a 107 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQA 107 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHH
Confidence 345677777776554 36788888888887665554 45556666655442 4578899999987765 567888
Q ss_pred HHHHHHHHHH-----cCC--hHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 039523 87 WNIIACLHMI-----KNK--SKEAFIAFKEALKLKRNGWQLWENYSHVAL 129 (244)
Q Consensus 87 ~~~l~~~~~~-----~~~--~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 129 (244)
...+|.++.. .++ ..+|.+++.++-.+. +..+.++|...+.
T Consensus 108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~ 155 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYM 155 (248)
T ss_pred HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHh
Confidence 8888887753 233 578888888876654 5556666665554
No 412
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.94 E-value=30 Score=31.34 Aligned_cols=30 Identities=10% Similarity=0.214 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMAL 45 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 45 (244)
..++...|..++..|++++|...|-+.+..
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 456778889999999999999999888764
No 413
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=80.91 E-value=15 Score=25.15 Aligned_cols=120 Identities=10% Similarity=0.111 Sum_probs=68.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCChhHH-----------HHHHHHHHH---------ccCHHHHHHHHHHHHhcCCC
Q 039523 23 ARSAYNRGEYETSKILREAAMALNSLYPDGW-----------FALGAAALK---------ARDVEKALDVFTRAVQLDPE 82 (244)
Q Consensus 23 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------~~la~~~~~---------~g~~~~A~~~~~~a~~~~p~ 82 (244)
|.-....|..++..+...+.....+-...-| -.+-..+-. -|+...-+.++-..- ..
T Consensus 9 AK~~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n---~~ 85 (161)
T PF09205_consen 9 AKERILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRN---KL 85 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT-----
T ss_pred HHHHHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhc---ch
Confidence 3445566777777777777766554221111 112222222 345556666654321 11
Q ss_pred cHHHHHHHH-HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 83 NGEAWNIIA-CLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 83 ~~~~~~~l~-~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
+ -+..+| .++..+|+-++-.+.+....+.+..++..+..+|.+|.+.|+..++-+.+.+|-+.
T Consensus 86 s--e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 86 S--EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp ---HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred H--HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 1 233343 45667788777777887777666667999999999999999999999999988754
No 414
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=80.39 E-value=5 Score=34.92 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=36.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 039523 56 LGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEA 110 (244)
Q Consensus 56 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 110 (244)
+...+...++|++|....++.-+.- +++++..|..+....++++|.+.|.+|
T Consensus 779 iVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 779 LVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred HhhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 4455667788888888776654433 456777788888888888887777655
No 415
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=80.38 E-value=5.4 Score=19.61 Aligned_cols=26 Identities=12% Similarity=0.391 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHhhCCCChhHHHHHH
Q 039523 31 EYETSKILREAAMALNSLYPDGWFALG 57 (244)
Q Consensus 31 ~~~~A~~~~~~al~~~p~~~~~~~~la 57 (244)
+++.|...|++.+...| ++..|...|
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 35566666666666655 345555444
No 416
>PRK11619 lytic murein transglycosylase; Provisional
Probab=79.57 E-value=45 Score=29.69 Aligned_cols=126 Identities=6% Similarity=-0.006 Sum_probs=81.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh----hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 039523 20 RSLARSAYNRGEYETSKILREAAMALNSLYP----DGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM 95 (244)
Q Consensus 20 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 95 (244)
..++..-....+.+.|...+.+.....+-+. .++..+|.-....+..++|...+..+..... +...+-....+..
T Consensus 245 ~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al 323 (644)
T PRK11619 245 AAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMAL 323 (644)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHH
Confidence 3445555566777888888877655443332 2344555444444335677777776553322 3333333344555
Q ss_pred HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523 96 IKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLN 146 (244)
Q Consensus 96 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 146 (244)
..++++.....+...-....+.....+.+|..+...|+.++|..+|+++..
T Consensus 324 ~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888998887777765443345677889999998899999999999999854
No 417
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=79.43 E-value=5.5 Score=19.09 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=13.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q 039523 53 WFALGAAALKARDVEKALDVFTRAV 77 (244)
Q Consensus 53 ~~~la~~~~~~g~~~~A~~~~~~a~ 77 (244)
|..+..++.+.|+++.|..+++...
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4445555555666666655555543
No 418
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=79.41 E-value=29 Score=30.22 Aligned_cols=80 Identities=13% Similarity=0.116 Sum_probs=53.9
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 039523 27 YNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIA 106 (244)
Q Consensus 27 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 106 (244)
.+....+.+....+.-+............-+..+...|+.+.|-.+|++.+..+|+ ..++..+.-+.+.|-...|...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 96 (578)
T PRK15490 19 KQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLI 96 (578)
T ss_pred HHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHH
Confidence 34455566666666555555555556666677777777777888888887777776 5566677777777777777666
Q ss_pred HH
Q 039523 107 FK 108 (244)
Q Consensus 107 ~~ 108 (244)
+.
T Consensus 97 ~~ 98 (578)
T PRK15490 97 LK 98 (578)
T ss_pred HH
Confidence 65
No 419
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=79.31 E-value=10 Score=22.91 Aligned_cols=10 Identities=20% Similarity=0.282 Sum_probs=3.8
Q ss_pred ccCHHHHHHH
Q 039523 63 ARDVEKALDV 72 (244)
Q Consensus 63 ~g~~~~A~~~ 72 (244)
.|++.+|+.+
T Consensus 19 ~gr~~eAi~~ 28 (75)
T cd02682 19 EGNAEDAITN 28 (75)
T ss_pred cCCHHHHHHH
Confidence 3333333333
No 420
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=79.22 E-value=21 Score=31.91 Aligned_cols=121 Identities=13% Similarity=0.184 Sum_probs=72.7
Q ss_pred cCCHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHH---------ccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 039523 29 RGEYETSKILREAAMALN-SLYPDGWFALGAAALK---------ARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKN 98 (244)
Q Consensus 29 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 98 (244)
-|+.++|+...-.+++.. |..+..++..|.+|-. .+..+.|+++|+++.+..|..... ++++.++...|
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sG-IN~atLL~aaG 334 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSG-INLATLLRAAG 334 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhcc-ccHHHHHHHhh
Confidence 588899998888887765 4445666666666543 456788999999999998865443 34444444443
Q ss_pred -ChHHHHHHHHHHHhcCC--------CCHHHHHHHHH---HHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 99 -KSKEAFIAFKEALKLKR--------NGWQLWENYSH---VALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 99 -~~~~A~~~~~~a~~~~p--------~~~~~~~~la~---~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
+++...+.-.-++.++. ....-|...|. +-.-.+++.+|+..-++..++.|-
T Consensus 335 ~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 335 EHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred hhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCc
Confidence 34544444333333321 01111111221 122357888888888888888776
No 421
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=78.84 E-value=5.1 Score=24.26 Aligned_cols=17 Identities=29% Similarity=0.630 Sum_probs=10.7
Q ss_pred HccCHHHHHHHHHHHHh
Q 039523 62 KARDVEKALDVFTRAVQ 78 (244)
Q Consensus 62 ~~g~~~~A~~~~~~a~~ 78 (244)
..|++++|+++|..+++
T Consensus 18 ~~gny~eA~~lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 35666666666666654
No 422
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=78.42 E-value=31 Score=27.15 Aligned_cols=49 Identities=12% Similarity=-0.044 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCC--------CChhHHHHHHHHHHHccCHHH
Q 039523 20 RSLARSAYNRGEYETSKILREAAMALNS--------LYPDGWFALGAAALKARDVEK 68 (244)
Q Consensus 20 ~~la~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~ 68 (244)
..+|+......++++|+..|.+.+...- +.......++.+|...|++..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~ 63 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCS 63 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcch
Confidence 5677777888889999999988887621 123456678888888887653
No 423
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=77.88 E-value=5.9 Score=29.83 Aligned_cols=91 Identities=18% Similarity=0.216 Sum_probs=53.2
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCChh------------HHHHHHHHHHHccCH-HHH-HHHHHHHHh--cCCCcHH--HHH
Q 039523 27 YNRGEYETSKILREAAMALNSLYPD------------GWFALGAAALKARDV-EKA-LDVFTRAVQ--LDPENGE--AWN 88 (244)
Q Consensus 27 ~~~~~~~~A~~~~~~al~~~p~~~~------------~~~~la~~~~~~g~~-~~A-~~~~~~a~~--~~p~~~~--~~~ 88 (244)
+..|+++.|++...-+++.+-..|. .....+......|+. +-. ...+..+.. --|+... .+-
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K 173 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYK 173 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 4579999999999999997632221 122333444445542 111 222222221 1233333 334
Q ss_pred HHHHHHH---------HcCChHHHHHHHHHHHhcCCCC
Q 039523 89 IIACLHM---------IKNKSKEAFIAFKEALKLKRNG 117 (244)
Q Consensus 89 ~l~~~~~---------~~~~~~~A~~~~~~a~~~~p~~ 117 (244)
..|..+. ..++...|..++++|+.++|+.
T Consensus 174 ~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 174 AAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 4566563 4467789999999999999874
No 424
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=77.36 E-value=41 Score=28.03 Aligned_cols=94 Identities=15% Similarity=-0.013 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------hhHHHHHHHHHHHccC--------------HHHHHHHHHHHH
Q 039523 18 ELRSLARSAYNRGEYETSKILREAAMALNSLY------PDGWFALGAAALKARD--------------VEKALDVFTRAV 77 (244)
Q Consensus 18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------~~~A~~~~~~a~ 77 (244)
....+|...+..|+|+.|...|+.+.+-..++ +.+....|.+.+..+. ++.|...|.++-
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 45678999999999999999999888755422 1233344444444442 233333444421
Q ss_pred ----hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 039523 78 ----QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEAL 111 (244)
Q Consensus 78 ----~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 111 (244)
.....-..+....+.++...|.+.+|...+-+..
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~ 327 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWT 327 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 1111223345556666777777766655544443
No 425
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.02 E-value=30 Score=28.84 Aligned_cols=96 Identities=17% Similarity=0.131 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-----------hCCCChhHHHHHHHHHHHccCH----------HHHHHHHHHH
Q 039523 18 ELRSLARSAYNRGEYETSKILREAAMA-----------LNSLYPDGWFALGAAALKARDV----------EKALDVFTRA 76 (244)
Q Consensus 18 ~~~~la~~~~~~~~~~~A~~~~~~al~-----------~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~a 76 (244)
.+...|+.++....|++|+.++-.|-+ .-.+.+..-..+..||+...+. ..|.+.|.++
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s 244 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS 244 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence 456778888889999999887766633 2233344445666777776553 2333333332
Q ss_pred Hhc---------CCCcH------HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039523 77 VQL---------DPENG------EAWNIIACLHMIKNKSKEAFIAFKEALKL 113 (244)
Q Consensus 77 ~~~---------~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 113 (244)
.-. .|+.| ..+...|.+.+.+|+-++|.++++.+...
T Consensus 245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 211 13333 24556789999999999999999987653
No 426
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=76.98 E-value=6.2 Score=24.17 Aligned_cols=15 Identities=13% Similarity=0.510 Sum_probs=7.2
Q ss_pred CChHHHHHHHHHHHh
Q 039523 98 NKSKEAFIAFKEALK 112 (244)
Q Consensus 98 ~~~~~A~~~~~~a~~ 112 (244)
|+.++|+.+|+++++
T Consensus 22 g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 22 GDKEQALAHYRKGLR 36 (79)
T ss_pred CCHHHHHHHHHHHHH
Confidence 444455555544443
No 427
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=76.32 E-value=38 Score=27.13 Aligned_cols=101 Identities=10% Similarity=-0.008 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHH
Q 039523 50 PDGWFALGAAALKARDVEKALDVFTRAVQLDP------ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG---WQL 120 (244)
Q Consensus 50 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~ 120 (244)
..++...|..|.+.|+-+.|.+.+.+.....- +-.-....+|..+....-..+.++-.+..++...+. -..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 46888999999999999999998887665332 122234456666655544444444444444443321 122
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 121 WENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 121 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
-...|..+....+|.+|...|-.++.....
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 334566777788899998888877755443
No 428
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=76.15 E-value=38 Score=27.07 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=48.0
Q ss_pred HHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--HhhCCC--ChhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523 7 KLWKFQMISQLELRSLARSAYNRGEYETSKILREAA--MALNSL--YPDGWFALGAAALKARDVEKALDVFTRAVQ 78 (244)
Q Consensus 7 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a--l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 78 (244)
+-....|+..+.++..|...+.-|+|..|..++-.. +..+|+ +..+..+.-..-.-.-+|+.|.+-+.+.-.
T Consensus 120 e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 120 EHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLRE 195 (432)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333446778889999999999999999998875444 433332 233333333344556788999888776544
No 429
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=75.88 E-value=43 Score=27.52 Aligned_cols=64 Identities=17% Similarity=0.036 Sum_probs=44.0
Q ss_pred ccCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhhCCCC-----hhHHHHH--HHHHHHccCHHHHHHHHHH
Q 039523 12 QMISQLELRS--LARSAYNRGEYETSKILREAAMALNSLY-----PDGWFAL--GAAALKARDVEKALDVFTR 75 (244)
Q Consensus 12 ~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l--a~~~~~~g~~~~A~~~~~~ 75 (244)
+|........ .+..++..++|..|...|..+....+.. ...+..+ |..+...-++++|.+.+++
T Consensus 124 nP~~v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 124 DPYNVEGNTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4444444333 5568899999999999999999876422 2233344 4445567788999999986
No 430
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=75.77 E-value=15 Score=22.23 Aligned_cols=13 Identities=15% Similarity=0.414 Sum_probs=5.4
Q ss_pred HcCChHHHHHHHH
Q 039523 96 IKNKSKEAFIAFK 108 (244)
Q Consensus 96 ~~~~~~~A~~~~~ 108 (244)
..|++.+|+.+|+
T Consensus 18 ~~gr~~eAi~~Y~ 30 (75)
T cd02682 18 KEGNAEDAITNYK 30 (75)
T ss_pred hcCCHHHHHHHHH
Confidence 3444444444433
No 431
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=75.74 E-value=28 Score=25.32 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=24.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 039523 55 ALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK 99 (244)
Q Consensus 55 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 99 (244)
....++++.|.+++|.+.+++... +|++......+..+-...+.
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~ 159 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDP 159 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcccc
Confidence 334456666666666666666666 55555444444444443333
No 432
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=74.64 E-value=36 Score=29.64 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHH
Q 039523 15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFT 74 (244)
Q Consensus 15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 74 (244)
++...+..|..+-..+..+.|-.+|++.+..+|+ ..++..+..+.+.|-...|...+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 41 TSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred hHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 4556667777778888889999999999988887 566778888888888888888777
No 433
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=74.48 E-value=21 Score=23.26 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=10.3
Q ss_pred HHHHHHccCHHHHHHHHHHHHhc
Q 039523 57 GAAALKARDVEKALDVFTRAVQL 79 (244)
Q Consensus 57 a~~~~~~g~~~~A~~~~~~a~~~ 79 (244)
|......|++..|.+...++-+.
T Consensus 66 Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 66 GLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc
Confidence 33344444444444444444433
No 434
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=74.15 E-value=45 Score=26.90 Aligned_cols=126 Identities=13% Similarity=0.073 Sum_probs=77.9
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHH-----ccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCh
Q 039523 27 YNRGEYETSKILREAAMALNSLYP-DGWFALGAAALK-----ARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKS 100 (244)
Q Consensus 27 ~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~-----~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 100 (244)
+..+-.+++...+.+++....--+ ...-.++.++-. .-+|..-..+|.......| +|.+-.|.+.+..+..-.
T Consensus 267 W~r~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp 345 (415)
T COG4941 267 WDRALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGP 345 (415)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhH
Confidence 344555677777777776553222 222233333332 2356666666666666665 555666677776666666
Q ss_pred HHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchh
Q 039523 101 KEAFIAFKEALKL--KRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRI 153 (244)
Q Consensus 101 ~~A~~~~~~a~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 153 (244)
+.++...+-.... -......+-.-|..+.++|+.++|...|++++.+.++...
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 6777666554443 1223345556788899999999999999999998877543
No 435
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=73.13 E-value=19 Score=32.01 Aligned_cols=55 Identities=9% Similarity=0.032 Sum_probs=26.1
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523 97 KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK 151 (244)
Q Consensus 97 ~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 151 (244)
.|+|..++.-..-++...|....++...+.+|...+.++-|++...-.....|..
T Consensus 106 l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~ 160 (748)
T KOG4151|consen 106 LGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSN 160 (748)
T ss_pred ccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 3444444444444444455444444444445544444444444444444444444
No 436
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=72.51 E-value=27 Score=23.68 Aligned_cols=106 Identities=19% Similarity=0.066 Sum_probs=59.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHH
Q 039523 24 RSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEA 103 (244)
Q Consensus 24 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A 103 (244)
..+...+.....+.+++..+..++.++.....+..++.+.+ ..+.++.+.. ..+.-+. -..+.++.+.+-++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~---~~~~~~c~~~~l~~~~ 88 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDI---EKVGKLCEKAKLYEEA 88 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCH---HHHHHHHHHcCcHHHH
Confidence 34455678889999999999888877888888888887653 4555555552 1111111 1233444555556666
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHH
Q 039523 104 FIAFKEALKLKRNGWQLWENYSHVALD-VGNIGQALEAVQM 143 (244)
Q Consensus 104 ~~~~~~a~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~ 143 (244)
...+.+. ..... ...++.. .++++.|+++..+
T Consensus 89 ~~l~~k~----~~~~~----Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 89 VELYKKD----GNFKD----AIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHhh----cCHHH----HHHHHHHcccCHHHHHHHHHh
Confidence 6555442 11111 1122222 2667777776665
No 437
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=71.87 E-value=20 Score=31.88 Aligned_cols=102 Identities=15% Similarity=0.054 Sum_probs=79.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCC----hhHHHHHHHHHHH--ccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 039523 21 SLARSAYNRGEYETSKILREAAMALNSLY----PDGWFALGAAALK--ARDVEKALDVFTRAVQLDPENGEAWNIIACLH 94 (244)
Q Consensus 21 ~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 94 (244)
.-|+..+..+++..+.-.|..++..-|.+ .....+.+.+++. .|++.+++.-..-++...|....++...+.+|
T Consensus 58 ~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y 137 (748)
T KOG4151|consen 58 EEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKY 137 (748)
T ss_pred hhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHH
Confidence 33667778888888888888888877733 3345566666554 57888999989999999999999999989999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCHHHHH
Q 039523 95 MIKNKSKEAFIAFKEALKLKRNGWQLWE 122 (244)
Q Consensus 95 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 122 (244)
...++++-|++...-.....|++.....
T Consensus 138 ~al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 138 EALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 9999999998887777788888754433
No 438
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=71.86 E-value=36 Score=24.86 Aligned_cols=89 Identities=19% Similarity=0.135 Sum_probs=59.9
Q ss_pred HHHHHHhh------ccCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHc-----c--C
Q 039523 4 AMKKLWKF------QMISQLELRSLARSAYN-----RGEYETSKILREAAMALNSLYPDGWFALGAAALKA-----R--D 65 (244)
Q Consensus 4 ~~~~al~~------~p~~~~~~~~la~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g--~ 65 (244)
.|++|.++ +-..+..-+.+|..++. .++...|++.+..+-. .+.+.+...+|.++..- + +
T Consensus 50 nF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd 127 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPD 127 (248)
T ss_pred HHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCC
Confidence 45666555 22346667777776653 5688999999998876 45677777777776532 2 3
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039523 66 VEKALDVFTRAVQLDPENGEAWNIIACLHMI 96 (244)
Q Consensus 66 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 96 (244)
..+|.+++.++...+ +..+.+.++..+..
T Consensus 128 ~~Ka~~y~traCdl~--~~~aCf~LS~m~~~ 156 (248)
T KOG4014|consen 128 SEKAERYMTRACDLE--DGEACFLLSTMYMG 156 (248)
T ss_pred cHHHHHHHHHhccCC--CchHHHHHHHHHhc
Confidence 779999999987665 45556666665543
No 439
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=71.77 E-value=25 Score=22.92 Aligned_cols=47 Identities=15% Similarity=0.015 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 039523 87 WNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGN 133 (244)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~ 133 (244)
....|.+....|++..|.+...++-+..+.....+..-+.+...+||
T Consensus 62 al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 62 ALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 34556777788888888888888877766555555555666666654
No 440
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=71.66 E-value=22 Score=23.98 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=37.2
Q ss_pred CCChhHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 039523 47 SLYPDGWFALGAAALKARDVEKALDVFTRAVQ--LDPENGEAWNIIACLHMIKNKSKEAFIAFKE 109 (244)
Q Consensus 47 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 109 (244)
|....+|..++... ++ ..++|..+.. +.-..+..|...|..+...|++.+|.+.|+.
T Consensus 66 ~RyLkiWi~ya~~~---~d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 66 PRYLKIWLKYADNC---DE---PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 33345666666543 33 4555555544 3445566777888889999999999888864
No 441
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=70.50 E-value=17 Score=21.33 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=15.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 123 NYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 123 ~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
..|.-+-..|++++|+.+|.++++.
T Consensus 10 ~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 10 KKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3444555567777777777666543
No 442
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=70.29 E-value=55 Score=26.29 Aligned_cols=98 Identities=12% Similarity=-0.021 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---cHHH
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSLY------PDGWFALGAAALKARDVEKALDVFTRAVQLDPE---NGEA 86 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~ 86 (244)
.+++..+|..|.+.|+-+.|.+.+++..+..-.. .-....+|..|....-..+.++..+..++...+ .-..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 6789999999999999999999999887754211 223345666665554444444444444443221 1122
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039523 87 WNIIACLHMIKNKSKEAFIAFKEALKL 113 (244)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~a~~~ 113 (244)
....|.......++.+|-..|-..+..
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 333466666777888888888766654
No 443
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=70.22 E-value=19 Score=24.17 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=21.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 122 ENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 122 ~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
..+|..+...|++++|..+|-+|+...|+
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 44677777778888888888888887777
No 444
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=69.33 E-value=43 Score=24.70 Aligned_cols=61 Identities=8% Similarity=0.137 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHH-HHHHHHccCHHHHHHHHHHHH
Q 039523 17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFAL-GAAALKARDVEKALDVFTRAV 77 (244)
Q Consensus 17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~a~ 77 (244)
..+..+-......|+++.|-.+|--.+...+-+......+ +.++.+.+.-....+.++...
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 4455566666778999999999999988776555443344 445555555444445555443
No 445
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=68.43 E-value=20 Score=21.06 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=11.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 039523 21 SLARSAYNRGEYETSKILREAAM 43 (244)
Q Consensus 21 ~la~~~~~~~~~~~A~~~~~~al 43 (244)
..|...-..|++++|+.+|.+++
T Consensus 10 ~~Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 10 KKAVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444444555555555555444
No 446
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=67.99 E-value=59 Score=25.72 Aligned_cols=120 Identities=6% Similarity=-0.069 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHHHhhC-CCC-----hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---cHH---HHHHHHHHHHHc
Q 039523 30 GEYETSKILREAAMALN-SLY-----PDGWFALGAAALKARDVEKALDVFTRAVQLDPE---NGE---AWNIIACLHMIK 97 (244)
Q Consensus 30 ~~~~~A~~~~~~al~~~-p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~---~~~---~~~~l~~~~~~~ 97 (244)
+.-++-++.+.+.++.. .++ ..+|.++|..|.+.++.+.+.+++.+.+...-. ..+ ....+|.++..+
T Consensus 89 kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~ 168 (412)
T COG5187 89 KKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDR 168 (412)
T ss_pred HhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccH
Confidence 33444455555544432 222 468999999999999999999998887764321 122 344566677666
Q ss_pred CChHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 039523 98 NKSKEAFIAFKEALKLKRNGW---QLWENYSHVALDVGNIGQALEAVQMVLNITN 149 (244)
Q Consensus 98 ~~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 149 (244)
.-.++.++.....++...+.. ..-...|..+....+|.+|...+...+....
T Consensus 169 ~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 169 KVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 666777777777776654321 2233456777777889999888877775443
No 447
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=67.68 E-value=20 Score=24.04 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=12.1
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523 55 ALGAAALKARDVEKALDVFTRAVQLDP 81 (244)
Q Consensus 55 ~la~~~~~~g~~~~A~~~~~~a~~~~p 81 (244)
.+|..+...|++++|..+|-+++...|
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~ 94 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCP 94 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 344444444444444444444444444
No 448
>PRK11619 lytic murein transglycosylase; Provisional
Probab=67.40 E-value=93 Score=27.80 Aligned_cols=121 Identities=9% Similarity=-0.057 Sum_probs=83.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------------C-----C-
Q 039523 22 LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD-------------P-----E- 82 (244)
Q Consensus 22 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-------------p-----~- 82 (244)
........++++.....+...-..........+.+|..+...|+.++|...|+++.... | .
T Consensus 318 r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~ 397 (644)
T PRK11619 318 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDK 397 (644)
T ss_pred HHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCC
Confidence 34455578888887777777544444566778888999888999999999988864321 0 0
Q ss_pred c--H------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039523 83 N--G------EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMV 144 (244)
Q Consensus 83 ~--~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 144 (244)
. . .--...+..+...|....|...+..++.. .+..-...++......|.++.++....++
T Consensus 398 ~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 398 APKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred CCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 0 0 01234456677888888888888877765 24556677888888889888887766544
No 449
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.69 E-value=56 Score=29.72 Aligned_cols=55 Identities=13% Similarity=0.186 Sum_probs=37.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCC-hhHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 039523 24 RSAYNRGEYETSKILREAAMALNSLY-PDGWFALGAAALKARDVEKALDVFTRAVQL 79 (244)
Q Consensus 24 ~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 79 (244)
....+..-|..|+...+.- ..+++. ..+...+|.-++..|++++|...|-+.+..
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 3445555666666554432 222322 356778899999999999999999888764
No 450
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=66.37 E-value=1.1e+02 Score=28.05 Aligned_cols=108 Identities=14% Similarity=0.195 Sum_probs=78.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHH---HccCHHHHHHHHHHHHhcCC
Q 039523 5 MKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAAL---KARDVEKALDVFTRAVQLDP 81 (244)
Q Consensus 5 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~a~~~~p 81 (244)
++.-+.+++.+...+..|-.+++..|++++-...-.++..+.|.++..|.....-.. ..++..++...|++++.- -
T Consensus 102 ~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d-y 180 (881)
T KOG0128|consen 102 LEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD-Y 180 (881)
T ss_pred HHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc-c
Confidence 445555678888888899999999999999888888888889988888876554433 236778888889998864 3
Q ss_pred CcHHHHHHHHHHH-------HHcCChHHHHHHHHHHHhc
Q 039523 82 ENGEAWNIIACLH-------MIKNKSKEAFIAFKEALKL 113 (244)
Q Consensus 82 ~~~~~~~~l~~~~-------~~~~~~~~A~~~~~~a~~~ 113 (244)
+++..|...+... ...++++.....|.+++..
T Consensus 181 ~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 181 NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRS 219 (881)
T ss_pred ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhh
Confidence 4445554444433 4456677888888888765
No 451
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=66.27 E-value=38 Score=22.88 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039523 119 QLWENYSHVALDVGNIGQALEAVQMV 144 (244)
Q Consensus 119 ~~~~~la~~~~~~~~~~~A~~~~~~a 144 (244)
....++|..+...|+.+-.+.+++-|
T Consensus 51 isCHNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 51 ISCHNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred HHHhhHHHHHHHcCChHHHHHHHHHH
Confidence 44667777777888777777776544
No 452
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=65.07 E-value=12 Score=22.58 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=7.1
Q ss_pred cCHHHHHHHHHHHH
Q 039523 64 RDVEKALDVFTRAV 77 (244)
Q Consensus 64 g~~~~A~~~~~~a~ 77 (244)
|++++|..+|..++
T Consensus 20 ~~y~eA~~~Y~~~i 33 (75)
T cd02677 20 GDYEAAFEFYRAGV 33 (75)
T ss_pred hhHHHHHHHHHHHH
Confidence 55555555554443
No 453
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=64.49 E-value=19 Score=29.51 Aligned_cols=12 Identities=50% Similarity=0.318 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHh
Q 039523 101 KEAFIAFKEALK 112 (244)
Q Consensus 101 ~~A~~~~~~a~~ 112 (244)
.+|.+.+.+|-.
T Consensus 379 ~eAE~iL~kAN~ 390 (404)
T PF12753_consen 379 KEAEKILKKANK 390 (404)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 455555555543
No 454
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=64.33 E-value=73 Score=25.53 Aligned_cols=100 Identities=13% Similarity=0.159 Sum_probs=69.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHH
Q 039523 24 RSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEA 103 (244)
Q Consensus 24 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A 103 (244)
......|+...|...-. -+++ | +...|.....++...++|++=..... . ..+|-.|--...++...|+..+|
T Consensus 185 ~~li~~~~~k~A~kl~k-~Fkv-~-dkrfw~lki~aLa~~~~w~eL~~fa~-s----kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 185 RKLIEMGQEKQAEKLKK-EFKV-P-DKRFWWLKIKALAENKDWDELEKFAK-S----KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHCCCHHHHHHHHH-HcCC-c-HHHHHHHHHHHHHhcCCHHHHHHHHh-C----CCCCCChHHHHHHHHHCCCHHHH
Confidence 33456787777665533 3333 3 56788888999999999997665432 2 34556677777888899999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 039523 104 FIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEA 140 (244)
Q Consensus 104 ~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 140 (244)
..+..+ + ++ ......|...|++.+|.+.
T Consensus 257 ~~yI~k---~-~~-----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 257 SKYIPK---I-PD-----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHh---C-Ch-----HHHHHHHHHCCCHHHHHHH
Confidence 998887 2 21 3456777888999888654
No 455
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.41 E-value=98 Score=26.67 Aligned_cols=91 Identities=9% Similarity=-0.082 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCChHHHHHHHH
Q 039523 33 ETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPE----NGEAWNIIACLHMIKNKSKEAFIAFK 108 (244)
Q Consensus 33 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~----~~~~~~~l~~~~~~~~~~~~A~~~~~ 108 (244)
....+.+.......|.++......+..+...|+.+.|+..++..+. +. ..-.++.+|.++..+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3344455555667888888888889999999998888888888776 22 12356788899999999999999998
Q ss_pred HHHhcCCCCHHHHHHHH
Q 039523 109 EALKLKRNGWQLWENYS 125 (244)
Q Consensus 109 ~a~~~~p~~~~~~~~la 125 (244)
.....+.-+.-.|..++
T Consensus 328 ~L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFA 344 (546)
T ss_pred HHHhhhhhhHHHHHHHH
Confidence 88777654444454554
No 456
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=63.03 E-value=44 Score=22.56 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 039523 19 LRSLARSAYNRGEYETSKILREAAMALN 46 (244)
Q Consensus 19 ~~~la~~~~~~~~~~~A~~~~~~al~~~ 46 (244)
+..+|...++.+++-.++-.|++|+...
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~s 31 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLS 31 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 4567788888888888888888887653
No 457
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.75 E-value=79 Score=25.37 Aligned_cols=93 Identities=16% Similarity=-0.012 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CC------cHHHHHHHHHHHHHcCChHHHHHHHHHHH--hcCCCCHHHHH
Q 039523 52 GWFALGAAALKARDVEKALDVFTRAVQLD-PE------NGEAWNIIACLHMIKNKSKEAFIAFKEAL--KLKRNGWQLWE 122 (244)
Q Consensus 52 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~-p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--~~~p~~~~~~~ 122 (244)
....+|.+|.+.++|..|-..+.-.-... +. ....+..+|.+|.+.++..+|..+..++- ..+..+.....
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqi 184 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQI 184 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHH
Confidence 56788888989999988887765432222 11 12356778888999998888888876653 22334544444
Q ss_pred HH----HHHHHHcCCHHHHHHHHHHH
Q 039523 123 NY----SHVALDVGNIGQALEAVQMV 144 (244)
Q Consensus 123 ~l----a~~~~~~~~~~~A~~~~~~a 144 (244)
.+ |++.-..++|-+|...|-+.
T Consensus 185 e~kvc~ARvlD~krkFlEAAqrYyel 210 (399)
T KOG1497|consen 185 EYKVCYARVLDYKRKFLEAAQRYYEL 210 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 44444556666665555444
No 458
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=62.13 E-value=28 Score=21.13 Aligned_cols=23 Identities=9% Similarity=-0.009 Sum_probs=12.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Q 039523 125 SHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 125 a~~~~~~~~~~~A~~~~~~al~~ 147 (244)
|.-+-..|++++|+.+|..+++.
T Consensus 13 Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 13 AVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 33444556666666666665543
No 459
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=61.06 E-value=40 Score=30.35 Aligned_cols=114 Identities=16% Similarity=0.131 Sum_probs=67.2
Q ss_pred ccCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccC-HHHHHHHHHHHHhcCC
Q 039523 12 QMISQLELRSLARSAYN---------RGEYETSKILREAAMALNSLYPDGWFALGAAALKARD-VEKALDVFTRAVQLDP 81 (244)
Q Consensus 12 ~p~~~~~~~~la~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~p 81 (244)
.|-.++.+..-|++|-. .+..+.|+.+|+++.+..|.. ..-.+++.++...|+ |+...+.=.-.++++.
T Consensus 274 g~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~-~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~ 352 (1226)
T KOG4279|consen 274 GPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE-YSGINLATLLRAAGEHFENSLELQQIGMKLNS 352 (1226)
T ss_pred CCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh-hccccHHHHHHHhhhhccchHHHHHHHHHHHH
Confidence 44556666666777654 467888999999999999943 333455666665554 3333333222233221
Q ss_pred --------CcHHHHHHHHHH---HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 039523 82 --------ENGEAWNIIACL---HMIKNKSKEAFIAFKEALKLKRNGWQLWENYSH 126 (244)
Q Consensus 82 --------~~~~~~~~l~~~---~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~ 126 (244)
.....|+..|.. ..-.+++.+|+...+...++.|..+..-..+..
T Consensus 353 LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~men 408 (1226)
T KOG4279|consen 353 LLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTMEN 408 (1226)
T ss_pred HhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHHH
Confidence 112233333332 345678889999888888888765444333333
No 460
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=60.08 E-value=19 Score=17.36 Aligned_cols=13 Identities=15% Similarity=0.089 Sum_probs=6.3
Q ss_pred CHHHHHHHHHHHH
Q 039523 31 EYETSKILREAAM 43 (244)
Q Consensus 31 ~~~~A~~~~~~al 43 (244)
+..+|..+++++.
T Consensus 20 d~~~A~~~~~~Aa 32 (36)
T smart00671 20 DLEKALEYYKKAA 32 (36)
T ss_pred CHHHHHHHHHHHH
Confidence 4455555554443
No 461
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=60.06 E-value=32 Score=20.90 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=9.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 039523 23 ARSAYNRGEYETSKILREAAM 43 (244)
Q Consensus 23 a~~~~~~~~~~~A~~~~~~al 43 (244)
|...-..|+|++|+.+|..++
T Consensus 13 Ave~D~~g~y~eA~~~Y~~ai 33 (76)
T cd02681 13 AVQRDQEGRYSEAVFYYKEAA 33 (76)
T ss_pred HHHHHHccCHHHHHHHHHHHH
Confidence 333334445555544444444
No 462
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=59.67 E-value=27 Score=21.42 Aligned_cols=23 Identities=26% Similarity=0.107 Sum_probs=14.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Q 039523 125 SHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 125 a~~~~~~~~~~~A~~~~~~al~~ 147 (244)
|..+-..|+.+.|+.+|+++++.
T Consensus 15 aL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 15 ALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HhhhhhcCCHHHHHHHHHHHHHH
Confidence 33344447777777777777654
No 463
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=58.45 E-value=69 Score=27.80 Aligned_cols=28 Identities=7% Similarity=-0.109 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523 118 WQLWENYSHVALDVGNIGQALEAVQMVL 145 (244)
Q Consensus 118 ~~~~~~la~~~~~~~~~~~A~~~~~~al 145 (244)
...|..+|-.+.+.+++.+|+..|..+-
T Consensus 318 vYPYty~gg~~yR~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 318 VYPYTYLGGYYYRHKRYREALRSWAEAA 345 (618)
T ss_dssp SHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cccceehhhHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555543
No 464
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=57.89 E-value=91 Score=24.52 Aligned_cols=123 Identities=12% Similarity=-0.017 Sum_probs=79.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------Ch----hH---HHHH-HHHHHHccCHHHHHHHHHHHHhcCCCcH
Q 039523 19 LRSLARSAYNRGEYETSKILREAAMALNSL------YP----DG---WFAL-GAAALKARDVEKALDVFTRAVQLDPENG 84 (244)
Q Consensus 19 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~----~~---~~~l-a~~~~~~g~~~~A~~~~~~a~~~~p~~~ 84 (244)
+-.-+....-..||..|++.++++++.-.. +. .. ++.+ ..++..++++.+.....-+..+.-.+-|
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklP 117 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLP 117 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCC
Confidence 344566777789999999999999875311 11 11 2222 3456788999999998877776655555
Q ss_pred HHHHHHHH-HHHHcCChHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHH
Q 039523 85 EAWNIIAC-LHMIKNKSKEAFIAFKEALKLKRNGW-------QLWENYSHVALDVGNIGQALEAVQ 142 (244)
Q Consensus 85 ~~~~~l~~-~~~~~~~~~~A~~~~~~a~~~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~ 142 (244)
.-...++. .|.+.|......+.-..-+ .+|+|. .+-..+-.++.-+|.+++|.+...
T Consensus 118 pkIleLCILLysKv~Ep~amlev~~~WL-~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 118 PKILELCILLYSKVQEPAAMLEVASAWL-QDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH-hCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 55555554 4667777766666554433 455541 223344556677899999998873
No 465
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=57.19 E-value=18 Score=29.62 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 039523 101 KEAFIAFKEALKLKRNGWQLWENYSHVALDVGN 133 (244)
Q Consensus 101 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~ 133 (244)
..|++++++|.. .++|..|..+|.++..+|+
T Consensus 335 ~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 335 KKALEYLKKAQD--EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHHH--S--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc--cCChhHHHHHHHHHhhhhc
Confidence 456666666655 4567889999999988885
No 466
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=56.93 E-value=84 Score=26.80 Aligned_cols=51 Identities=12% Similarity=-0.076 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 039523 86 AWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQ 136 (244)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~ 136 (244)
-...++.-....|+|.-+.+.+.+++--+|++..+....+.++.++|--.+
T Consensus 454 rVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE 504 (655)
T COG2015 454 RVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAE 504 (655)
T ss_pred HHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhc
Confidence 345677778899999999999999999999999999999999999884433
No 467
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=56.71 E-value=1.1e+02 Score=25.18 Aligned_cols=45 Identities=9% Similarity=0.030 Sum_probs=29.5
Q ss_pred chHHHHHHhhccCCHH--HHH--HHHHHHHhcCCHHHHHHHHHHHHhhC
Q 039523 2 MPAMKKLWKFQMISQL--ELR--SLARSAYNRGEYETSKILREAAMALN 46 (244)
Q Consensus 2 i~~~~~al~~~p~~~~--~~~--~la~~~~~~~~~~~A~~~~~~al~~~ 46 (244)
.+.|+.....-|.... .+. ..|..++..-++.+|.+.++..+...
T Consensus 151 ~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 151 ARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 4455565553233332 333 44666788999999999999988763
No 468
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=56.42 E-value=92 Score=24.09 Aligned_cols=113 Identities=16% Similarity=0.021 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhC------CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHH
Q 039523 15 SQLELRSLARSAYNRGEYE-TSKILREAAMALN------SLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAW 87 (244)
Q Consensus 15 ~~~~~~~la~~~~~~~~~~-~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 87 (244)
+....-.++.+....+.-+ .-..+.+++++.. -.++..+..+|..+.+.|++.+|..++-.. +++...
T Consensus 48 ~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~ 122 (260)
T PF04190_consen 48 DEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAF 122 (260)
T ss_dssp SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHH
T ss_pred CHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHH
Confidence 3333445555554443222 2333445555443 134677788888888888888887776432 222221
Q ss_pred HH--HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhh
Q 039523 88 NI--IACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENY-SHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 88 ~~--l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l-a~~~~~~~~~~~A~~~~~~al~~ 147 (244)
.. +-... ..+..|.....+... ..-|...++...|...+....+.
T Consensus 123 ~~~~ll~~~---------------~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 123 AYVMLLEEW---------------STKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHH---------------HHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---------------HHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 11 11111 112234343443333 34566778888888776666555
No 469
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=56.36 E-value=24 Score=17.40 Aligned_cols=12 Identities=33% Similarity=0.268 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 039523 32 YETSKILREAAM 43 (244)
Q Consensus 32 ~~~A~~~~~~al 43 (244)
.++|..+|+++.
T Consensus 24 ~~~A~~~~~~Aa 35 (39)
T PF08238_consen 24 YEKAFKWYEKAA 35 (39)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccchHHHHHHHH
Confidence 444444444443
No 470
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=56.35 E-value=76 Score=23.21 Aligned_cols=44 Identities=11% Similarity=0.038 Sum_probs=27.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 039523 91 ACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIG 135 (244)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~ 135 (244)
..++.+.|.+++|.+.+++... +|++......|..+-.....+.
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h 161 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAH 161 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcccccc
Confidence 3456777777777777777777 6666555555555444444333
No 471
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.09 E-value=1.3e+02 Score=25.30 Aligned_cols=95 Identities=18% Similarity=0.009 Sum_probs=57.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-----------CCcHHHHHHHHHHHHHcCCh---HHH-------HHHHHHHH
Q 039523 53 WFALGAAALKARDVEKALDVFTRAVQLD-----------PENGEAWNIIACLHMIKNKS---KEA-------FIAFKEAL 111 (244)
Q Consensus 53 ~~~la~~~~~~g~~~~A~~~~~~a~~~~-----------p~~~~~~~~l~~~~~~~~~~---~~A-------~~~~~~a~ 111 (244)
++..|.+.++...|++|+.++-.+-+.. .+.+-.-..+.+||+.+.+. .+| .+.|.++.
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~sy 245 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSY 245 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhh
Confidence 4556777888889999988876554432 23333344456677766654 233 33333221
Q ss_pred h--------c-CCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 112 K--------L-KRNGW------QLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 112 ~--------~-~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
- + .+..+ .....-|.+.+.+|+-++|.++++.+...
T Consensus 246 Genl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 246 GENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1 1 12222 23445688999999999999999988653
No 472
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=54.05 E-value=96 Score=23.59 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 039523 18 ELRSLARSAYNRGEYETSKILREAAMALNSLY 49 (244)
Q Consensus 18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 49 (244)
-+..+|.+..+.|+|++.+.+.++++..+|+-
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eL 34 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPEL 34 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCC
Confidence 35678999999999999999999999997753
No 473
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=53.43 E-value=39 Score=19.47 Aligned_cols=20 Identities=15% Similarity=0.041 Sum_probs=8.5
Q ss_pred HHHHHHccCHHHHHHHHHHH
Q 039523 57 GAAALKARDVEKALDVFTRA 76 (244)
Q Consensus 57 a~~~~~~g~~~~A~~~~~~a 76 (244)
...+...|++++|.+++...
T Consensus 30 I~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 30 IYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 33344444444444444443
No 474
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=53.20 E-value=68 Score=21.64 Aligned_cols=64 Identities=6% Similarity=-0.125 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----------------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 039523 52 GWFALGAAALKARDVEKALDVFTRAVQLDPE----------------NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR 115 (244)
Q Consensus 52 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 115 (244)
....+-.++.+.|+.+.-..++++...++.+ +...+..+..++...|++..|+++.....+..|
T Consensus 4 ~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~ 83 (126)
T PF12921_consen 4 LLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP 83 (126)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC
Confidence 3445555566666766666666665554421 134566666677777777777777766665543
No 475
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=52.95 E-value=1.2e+02 Score=24.55 Aligned_cols=121 Identities=12% Similarity=-0.036 Sum_probs=76.7
Q ss_pred HHHHHHhh-ccCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039523 4 AMKKLWKF-QMISQLELRSLARSAYN-----RGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAV 77 (244)
Q Consensus 4 ~~~~al~~-~p~~~~~~~~la~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 77 (244)
++.+++.. .|.-......++-++.. .-+|..-..+|.-.....| ++.+-.+.+....+..-...++...+...
T Consensus 278 ll~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~ 356 (415)
T COG4941 278 LLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALL 356 (415)
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhh
Confidence 34444443 34333334444444433 2356666666776666777 55566666777666666777777666655
Q ss_pred hcC--CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 039523 78 QLD--PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYS 125 (244)
Q Consensus 78 ~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la 125 (244)
... ......+...|..+.+.|+.++|...|++++.+.++..+..+...
T Consensus 357 ~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 357 ARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred cccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 431 233445667788899999999999999999999887766554443
No 476
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=52.85 E-value=1.5e+02 Score=25.63 Aligned_cols=88 Identities=14% Similarity=0.116 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--------CcHHHHH
Q 039523 17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP--------ENGEAWN 88 (244)
Q Consensus 17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--------~~~~~~~ 88 (244)
..|...-..|...++|++|+..++-. .+...|-.+|-+.....++.-+...|..+.+++. +-+.---
T Consensus 574 ~py~~iL~e~~sssKWeqavRLCrfv-----~eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~ 648 (737)
T KOG1524|consen 574 NPYPEILHEYLSSSKWEQAVRLCRFV-----QEQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEE 648 (737)
T ss_pred cccHHHHHHHhccchHHHHHHHHHhc-----cchHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHH
Confidence 33455556677889999999887753 3556788888888888888888888887776653 1122234
Q ss_pred HHHHHHHHcCChHHHHHHHHH
Q 039523 89 IIACLHMIKNKSKEAFIAFKE 109 (244)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~ 109 (244)
.++......|+..+|.-.+.+
T Consensus 649 ~mA~~~l~~G~~~eAe~iLl~ 669 (737)
T KOG1524|consen 649 QMAENSLMLGRMLEAETILLH 669 (737)
T ss_pred HHHHHHHHhccchhhhHHHHh
Confidence 566677777888777766654
No 477
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=51.04 E-value=76 Score=21.65 Aligned_cols=28 Identities=18% Similarity=0.238 Sum_probs=12.1
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 039523 65 DVEKALDVFTRAVQLDPENGEAWNIIAC 92 (244)
Q Consensus 65 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 92 (244)
+.+.|..+|..+++..|++..++..+..
T Consensus 91 e~e~Ae~vY~el~~~~P~HLpaHla~i~ 118 (139)
T PF12583_consen 91 EPENAEQVYEELLEAHPDHLPAHLAMIQ 118 (139)
T ss_dssp -HHHHHHHHHHHHHH-TT-THHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCcchHHHHHHHHH
Confidence 3344555555555555555444444433
No 478
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=50.26 E-value=54 Score=19.59 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=12.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 039523 126 HVALDVGNIGQALEAVQMVLN 146 (244)
Q Consensus 126 ~~~~~~~~~~~A~~~~~~al~ 146 (244)
.-+-..|++++|+.+|..+++
T Consensus 16 v~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 16 LKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 334445666666666666554
No 479
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=48.62 E-value=82 Score=21.25 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=18.9
Q ss_pred HccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039523 62 KARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI 96 (244)
Q Consensus 62 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 96 (244)
..+.......+++..+..++.++..+..+..++.+
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 34455555555555555555555555555555544
No 480
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.60 E-value=48 Score=26.96 Aligned_cols=58 Identities=17% Similarity=0.081 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--------CChhHHHHHHHHHHHccCHHHHHHHH
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNS--------LYPDGWFALGAAALKARDVEKALDVF 73 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~ 73 (244)
..-+...|+-++.++++++|...|..+..+.. ++..+++.+|.+++..+++...+-..
T Consensus 41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34567889999999999999999999987642 34567888999999888877665543
No 481
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.28 E-value=74 Score=20.61 Aligned_cols=38 Identities=8% Similarity=-0.030 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhH
Q 039523 118 WQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDT 155 (244)
Q Consensus 118 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 155 (244)
+..+-.+|.+|...|+.+.|.+-|+.--.+.|......
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fm 109 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFM 109 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHH
Confidence 44566667777777777777777766666666654433
No 482
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=48.11 E-value=39 Score=29.17 Aligned_cols=43 Identities=9% Similarity=0.009 Sum_probs=26.3
Q ss_pred chHHHHHHhh-----ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 039523 2 MPAMKKLWKF-----QMISQLELRSLARSAYNRGEYETSKILREAAMA 44 (244)
Q Consensus 2 i~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 44 (244)
+.+|.+|+.. +-.+...|..+|..+++.+++.+|+..+-.+-.
T Consensus 299 ~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 299 LELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp HHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 4566666664 233455667777777777777777777766644
No 483
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.50 E-value=86 Score=21.56 Aligned_cols=41 Identities=17% Similarity=0.219 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHh
Q 039523 122 ENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNL 165 (244)
Q Consensus 122 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 165 (244)
..+|.-+...|+++++..++-.|+...|. ...+|..+.+.+
T Consensus 85 v~lGE~L~~qg~~e~ga~h~~nAi~vcgq---paqLL~vlq~tl 125 (143)
T KOG4056|consen 85 VQLGEELLAQGNEEEGAEHLANAIVVCGQ---PAQLLQVLQQTL 125 (143)
T ss_pred HHhHHHHHHccCHHHHHHHHHHHHhhcCC---HHHHHHHHHhhC
Confidence 35677777778888888888888877776 334444444433
No 484
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=46.73 E-value=68 Score=22.41 Aligned_cols=29 Identities=10% Similarity=0.134 Sum_probs=22.8
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHhhcCC
Q 039523 122 ENYSHVALDVG-NIGQALEAVQMVLNITNN 150 (244)
Q Consensus 122 ~~la~~~~~~~-~~~~A~~~~~~al~~~p~ 150 (244)
..+|..+...| +..++..+|-+|+...|+
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~q 123 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVYPQ 123 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhCCC
Confidence 45677777778 788888888888888877
No 485
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=46.27 E-value=58 Score=18.80 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=10.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHhc
Q 039523 57 GAAALKARDVEKALDVFTRAVQL 79 (244)
Q Consensus 57 a~~~~~~g~~~~A~~~~~~a~~~ 79 (244)
+..++..|+|=+|-+.++.....
T Consensus 6 ~~~l~n~g~f~EaHEvlE~~W~~ 28 (62)
T PF03745_consen 6 GIELFNAGDFFEAHEVLEELWKA 28 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCC
T ss_pred HHHHHcCCCHHHhHHHHHHHHHH
Confidence 33444455555555555554443
No 486
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=46.07 E-value=65 Score=22.51 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=18.4
Q ss_pred HHHHHHHHcc-CHHHHHHHHHHHHhcCCCcH
Q 039523 55 ALGAAALKAR-DVEKALDVFTRAVQLDPENG 84 (244)
Q Consensus 55 ~la~~~~~~g-~~~~A~~~~~~a~~~~p~~~ 84 (244)
.+|..+...| +.++|..+|-+++...|+-.
T Consensus 95 ~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~ 125 (148)
T TIGR00985 95 QLGEELMAQGTNVDEGAVHFYNALKVYPQPQ 125 (148)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhCCCHH
Confidence 5566666666 66666666666666665443
No 487
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=45.62 E-value=92 Score=20.95 Aligned_cols=44 Identities=18% Similarity=0.131 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523 102 EAFIAFKEALKL--KRNGWQLWENYSHVALDVGNIGQALEAVQMVL 145 (244)
Q Consensus 102 ~A~~~~~~a~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 145 (244)
++.+.|...... ....+..|...|..+...|++++|...|+.++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 788888766654 55678999999999999999999999998875
No 488
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=45.53 E-value=1.5e+02 Score=23.52 Aligned_cols=99 Identities=16% Similarity=0.040 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hh---HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHH
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSLY---PD---GWFALGAAALKARDVEKALDVFTRAVQLDPEN---GEA 86 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~---~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~ 86 (244)
.+++.++|..|.+.++.+.+.+++.+.++..-.. .. .-..+|.+|-...-..+.++..+..++...+= -..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 6889999999999999999999998888765322 12 23456666666655667777766666654321 122
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 039523 87 WNIIACLHMIKNKSKEAFIAFKEALKLK 114 (244)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 114 (244)
-...|.......++.+|-..+-..+...
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 2335666666778888888777665543
No 489
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=45.15 E-value=70 Score=19.42 Aligned_cols=14 Identities=14% Similarity=0.292 Sum_probs=6.5
Q ss_pred HccCHHHHHHHHHH
Q 039523 62 KARDVEKALDVFTR 75 (244)
Q Consensus 62 ~~g~~~~A~~~~~~ 75 (244)
..|++++|+.+|..
T Consensus 18 ~~g~y~eAl~~Y~~ 31 (77)
T cd02683 18 QEGRFQEALVCYQE 31 (77)
T ss_pred HhccHHHHHHHHHH
Confidence 34444444444443
No 490
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=45.07 E-value=1.6e+02 Score=23.48 Aligned_cols=120 Identities=12% Similarity=0.070 Sum_probs=77.3
Q ss_pred hcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHh----cCCCc---------------HHHHH
Q 039523 28 NRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ----LDPEN---------------GEAWN 88 (244)
Q Consensus 28 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~----~~p~~---------------~~~~~ 88 (244)
..+++.+.+...++.+..+|--.+..+..+.++.+.|. +.+.......+. .-|.- ...|+
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG~-~~~a~aI~~el~~fL~RlP~L~~L~F~DGtPFad~~T~~WL 189 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLGY-AAVAQAIRDELAAFLERLPGLLELKFSDGTPFADDETRAWL 189 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCcChhhcccCCCCCCCCHHHHHHH
Confidence 55677788888888888877767777777888888774 444443332211 11100 01121
Q ss_pred ----------------------------HHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHH
Q 039523 89 ----------------------------IIACLHMIKNKSKEAFIAFKEALKLKRNG---WQLWENYSHVALDVGNIGQA 137 (244)
Q Consensus 89 ----------------------------~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~~~~~~A 137 (244)
.-+..+...|..+.|+..++..+...++. ......++.++...|.++-|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA 269 (301)
T TIGR03362 190 AQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELA 269 (301)
T ss_pred HhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 22455667788888888888765543322 33455678899999999999
Q ss_pred HHHHHHHHhhc
Q 039523 138 LEAVQMVLNIT 148 (244)
Q Consensus 138 ~~~~~~al~~~ 148 (244)
...|....+..
T Consensus 270 ~~ll~~L~~~~ 280 (301)
T TIGR03362 270 QQLYAALDQQI 280 (301)
T ss_pred HHHHHHHHHHH
Confidence 99988877654
No 491
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=44.84 E-value=1.1e+02 Score=25.17 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=46.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhc-CCCc--------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 039523 55 ALGAAALKARDVEKALDVFTRAVQL-DPEN--------GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN 116 (244)
Q Consensus 55 ~la~~~~~~g~~~~A~~~~~~a~~~-~p~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 116 (244)
.+-.+|++.++++-+...++..... .|+. ...++.+|.++....++.+|...+.+++..-|.
T Consensus 182 lL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 182 LLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 4556788999999888776544332 2322 246788999999999999999999999888775
No 492
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=44.62 E-value=1.5e+02 Score=23.22 Aligned_cols=109 Identities=10% Similarity=0.011 Sum_probs=68.3
Q ss_pred HHHHHccCHHHHHHHHHHHHhcCCC----cHHHHHHHHHH--HHHcCChH----HHHHHHHHHHhcCCCCHHHHHHHHHH
Q 039523 58 AAALKARDVEKALDVFTRAVQLDPE----NGEAWNIIACL--HMIKNKSK----EAFIAFKEALKLKRNGWQLWENYSHV 127 (244)
Q Consensus 58 ~~~~~~g~~~~A~~~~~~a~~~~p~----~~~~~~~l~~~--~~~~~~~~----~A~~~~~~a~~~~p~~~~~~~~la~~ 127 (244)
..++..++|++=.+.+.+..+...+ ... |+..... ........ .-...++.=++..|++..++..+|.+
T Consensus 8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~-Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 8 RELLQARDFAELDALLARLLQAWLQSRDGEQR-YFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhhhhccCccch-HHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 4567788998888888877654322 112 1111111 11221111 34555666677799998888888877
Q ss_pred HHHcC----------------------CHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcc
Q 039523 128 ALDVG----------------------NIGQALEAVQMVLNITNNKRIDTELLERIVLNLEG 167 (244)
Q Consensus 128 ~~~~~----------------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 167 (244)
+.... -.+.|...+.+++.++|........+-.+.+.+.+
T Consensus 87 ~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fge 148 (277)
T PF13226_consen 87 WVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGE 148 (277)
T ss_pred HHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCC
Confidence 65431 14568888999999999977777767666666663
No 493
>PF11349 DUF3151: Protein of unknown function (DUF3151); InterPro: IPR014487 This group represents an uncharacterised conserved protein.
Probab=44.43 E-value=97 Score=20.85 Aligned_cols=28 Identities=25% Similarity=0.158 Sum_probs=16.5
Q ss_pred hccCCHHHHHHHHHHHHhcCCHHHHHHH
Q 039523 11 FQMISQLELRSLARSAYNRGEYETSKIL 38 (244)
Q Consensus 11 ~~p~~~~~~~~la~~~~~~~~~~~A~~~ 38 (244)
.+|.++-+|..|+...+..|+.-.|-.+
T Consensus 31 ~~P~ss~aWA~LAe~al~~g~~v~AYAy 58 (129)
T PF11349_consen 31 AHPASSLAWAALAEEALAAGRPVTAYAY 58 (129)
T ss_pred HCCCchHHHHHHHHHHHhCCCchhhhhh
Confidence 3566666666666666666654444443
No 494
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=43.85 E-value=2.2e+02 Score=24.89 Aligned_cols=111 Identities=12% Similarity=0.038 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 039523 30 GEYETSKILREAAMALNSLYPDGWFALGAAALKAR--DVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAF 107 (244)
Q Consensus 30 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 107 (244)
|+.++|+...++-..-.+ ........|.++..-+ ..+.=..+|+.+++.+|........+...+.. ...+...+
T Consensus 323 ~~l~eal~~~e~~c~~~~-~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~---~~~~~~Ll 398 (547)
T PF14929_consen 323 GRLKEALNELEKFCISST-CALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK---DYSAEQLL 398 (547)
T ss_pred ccHHHHHHHHHHhccCCC-ccchHHHHHHHHHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh---HHHHHHHH
Confidence 778888777666433222 2222333444444444 56677788999999999776665555444433 34455555
Q ss_pred HH---HHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 039523 108 KE---ALKLKRNGWQLWENYSHVALD-VGNIGQALEAVQMVL 145 (244)
Q Consensus 108 ~~---a~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al 145 (244)
+- -+...| ...+|..++.++.+ .++++.-.+....++
T Consensus 399 e~i~~~l~~~~-s~~iwle~~~~~l~~~~~~~~~~e~~~~~l 439 (547)
T PF14929_consen 399 EMIALHLDLVP-SHPIWLEFVSCFLKNPSRFEDKEEDHKSAL 439 (547)
T ss_pred HHHHHHhhcCC-CchHHHHHHHHHHhccccccccHHHHHHHH
Confidence 42 233343 46778888888887 677765555666664
No 495
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=43.45 E-value=72 Score=19.09 Aligned_cols=15 Identities=40% Similarity=0.536 Sum_probs=6.0
Q ss_pred hcCCHHHHHHHHHHH
Q 039523 28 NRGEYETSKILREAA 42 (244)
Q Consensus 28 ~~~~~~~A~~~~~~a 42 (244)
..|++++|+.+|.++
T Consensus 18 ~~g~y~eA~~~Y~~a 32 (75)
T cd02678 18 NAGNYEEALRLYQHA 32 (75)
T ss_pred HcCCHHHHHHHHHHH
Confidence 334444444433333
No 496
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=43.44 E-value=2.6e+02 Score=26.97 Aligned_cols=134 Identities=10% Similarity=-0.044 Sum_probs=0.0
Q ss_pred chHHHHHHhh-ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 2 MPAMKKLWKF-QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 2 i~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
++-|++|+.- ..-....+-..-+.-.+.|-|..|+.+|.--.+... .++..+|.-+...+.+++|.-.|+.+=+
T Consensus 893 L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k---~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-- 967 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQK---VIYEAYADHLREELMSDEAALMYERCGK-- 967 (1265)
T ss_pred HHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHH---HHHHHHHHHHHHhccccHHHHHHHHhcc--
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLN 146 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 146 (244)
.-..-.++...|+|.+|+....+.-.-.......-..++.-+..++++-+|-......+.
T Consensus 968 ------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 968 ------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred ------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
No 497
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=43.00 E-value=39 Score=15.95 Aligned_cols=9 Identities=44% Similarity=0.575 Sum_probs=3.2
Q ss_pred hcCCCcHHH
Q 039523 78 QLDPENGEA 86 (244)
Q Consensus 78 ~~~p~~~~~ 86 (244)
..+|.+..+
T Consensus 11 ~~~pknys~ 19 (31)
T PF01239_consen 11 EKDPKNYSA 19 (31)
T ss_dssp HHSTTCHHH
T ss_pred HHCcccccH
Confidence 333333333
No 498
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=42.98 E-value=46 Score=16.70 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHHH
Q 039523 120 LWENYSHVALDVGNI---GQALEAVQMVL 145 (244)
Q Consensus 120 ~~~~la~~~~~~~~~---~~A~~~~~~al 145 (244)
..+++|+++...... .+.+..++..+
T Consensus 3 t~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~ 31 (35)
T PF14852_consen 3 TQFNYAWGLVKSNNREDQQEGIALLEELY 31 (35)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 345555555555433 23444444443
No 499
>PF13934 ELYS: Nuclear pore complex assembly
Probab=42.86 E-value=1.5e+02 Score=22.45 Aligned_cols=130 Identities=15% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHhh-ccCCHHHHHHHHHHHHhcCCHHHH-----HHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523 5 MKKLWKF-QMISQLELRSLARSAYNRGEYETS-----KILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78 (244)
Q Consensus 5 ~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 78 (244)
+++++.. --.+.......+.+|+-.-+++.. ...|-....+.+ .......|..++..+++++|++.+
T Consensus 29 L~~Ll~~i~~~~~~~~~K~~l~~YlLlD~~~~~~~~~~~~Fa~~f~ip~--~~~~~~~g~W~LD~~~~~~A~~~L----- 101 (226)
T PF13934_consen 29 LRALLDLILSSNVSLLKKHSLFYYLLLDLDDTRPSELAESFARAFGIPP--KYIKFIQGFWLLDHGDFEEALELL----- 101 (226)
T ss_pred HHHHHHHHhcCCcCHHHhHHHHHHHHHhcCccccccHHHHHHHHhCCCH--HHHHHHHHHHHhChHhHHHHHHHh-----
Q ss_pred cCCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039523 79 LDPEN-GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQM 143 (244)
Q Consensus 79 ~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 143 (244)
.+|.. +.....+..++...|+...|..++ ++..-...+......+..+ ...+...+|..+-++
T Consensus 102 ~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~-~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~ 165 (226)
T PF13934_consen 102 SHPSLIPWFPDKILQALLRRGDPKLALRYL-RAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRS 165 (226)
T ss_pred CCCCCCcccHHHHHHHHHHCCChhHHHHHH-HhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHh
No 500
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=41.87 E-value=1.8e+02 Score=24.50 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCcH------------------HHHHHHHHHHHHcCChHHHHHHHHHHHhc--
Q 039523 54 FALGAAALKARDVEKALDVFTRAVQLDPENG------------------EAWNIIACLHMIKNKSKEAFIAFKEALKL-- 113 (244)
Q Consensus 54 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~------------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-- 113 (244)
...|.-+...|++.+|+..|+.++..-|-.. .....+..=..+..-.+...+.-++.+++
T Consensus 208 Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lELAA 287 (422)
T PF06957_consen 208 LKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLELAA 287 (422)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHH
Q ss_pred --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHH
Q 039523 114 --------KRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLN 164 (244)
Q Consensus 114 --------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 164 (244)
.+....++..-....++.++|..|..+-++.|++.|........-..+...
T Consensus 288 YFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil~~~ 346 (422)
T PF06957_consen 288 YFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKILQAC 346 (422)
T ss_dssp HHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Done!