Query 039523
Match_columns 244
No_of_seqs 354 out of 3393
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 18:09:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039523.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039523hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pl2_A Hypothetical conserved 100.0 3E-26 1E-30 170.2 20.3 161 1-162 24-195 (217)
2 3vtx_A MAMA; tetratricopeptide 99.9 8.1E-26 2.8E-30 163.3 19.9 151 1-151 24-174 (184)
3 2h6f_A Protein farnesyltransfe 99.9 1.3E-24 4.4E-29 174.0 18.1 164 1-164 116-286 (382)
4 4i17_A Hypothetical protein; T 99.9 1.9E-24 6.5E-29 161.4 17.6 161 1-161 26-223 (228)
5 4gyw_A UDP-N-acetylglucosamine 99.9 1.4E-24 4.7E-29 186.2 18.3 150 1-150 28-177 (723)
6 4gyw_A UDP-N-acetylglucosamine 99.9 5.1E-24 1.8E-28 182.7 21.3 156 11-166 4-159 (723)
7 2pl2_A Hypothetical conserved 99.9 3.2E-23 1.1E-27 153.9 19.7 152 13-165 2-164 (217)
8 3vtx_A MAMA; tetratricopeptide 99.9 1.1E-22 3.9E-27 146.7 22.1 153 14-166 3-155 (184)
9 4ga2_A E3 SUMO-protein ligase 99.9 1.3E-24 4.5E-29 152.1 9.8 143 21-163 2-145 (150)
10 4abn_A Tetratricopeptide repea 99.9 2.6E-23 8.9E-28 171.5 18.5 162 1-163 122-303 (474)
11 4gco_A Protein STI-1; structur 99.9 2.3E-23 7.9E-28 141.3 14.9 122 7-128 4-125 (126)
12 2h6f_A Protein farnesyltransfe 99.9 1.7E-23 5.8E-28 167.5 15.5 157 8-164 89-246 (382)
13 4ga2_A E3 SUMO-protein ligase 99.9 1.2E-23 3.9E-28 147.3 12.8 133 1-133 16-149 (150)
14 1w3b_A UDP-N-acetylglucosamine 99.9 2.5E-22 8.6E-27 161.2 21.2 162 1-162 188-349 (388)
15 2q7f_A YRRB protein; TPR, prot 99.9 1E-21 3.5E-26 147.4 22.6 163 1-163 42-204 (243)
16 2q7f_A YRRB protein; TPR, prot 99.9 3.7E-22 1.3E-26 149.8 19.9 161 1-161 76-236 (243)
17 3urz_A Uncharacterized protein 99.9 6.7E-23 2.3E-27 151.1 14.7 151 1-152 23-191 (208)
18 4eqf_A PEX5-related protein; a 99.9 6.8E-22 2.3E-26 157.4 21.6 166 1-166 84-295 (365)
19 2ho1_A Type 4 fimbrial biogene 99.9 2.5E-21 8.5E-26 146.3 23.1 163 1-163 56-220 (252)
20 3as5_A MAMA; tetratricopeptide 99.9 4.3E-22 1.5E-26 143.0 17.8 153 1-153 27-179 (186)
21 2vq2_A PILW, putative fimbrial 99.9 2.2E-21 7.6E-26 143.6 22.1 160 1-160 27-190 (225)
22 1w3b_A UDP-N-acetylglucosamine 99.9 7.3E-22 2.5E-26 158.5 20.5 163 1-163 154-316 (388)
23 4i17_A Hypothetical protein; T 99.9 1.4E-21 4.8E-26 145.8 20.6 152 12-163 3-164 (228)
24 3uq3_A Heat shock protein STI1 99.9 7.7E-22 2.6E-26 149.1 18.7 148 1-148 57-237 (258)
25 3qky_A Outer membrane assembly 99.9 6E-22 2.1E-26 150.9 17.4 154 1-154 34-231 (261)
26 4eqf_A PEX5-related protein; a 99.9 1.9E-21 6.4E-26 154.9 19.9 150 1-150 118-313 (365)
27 3gyz_A Chaperone protein IPGC; 99.9 9E-23 3.1E-27 142.4 10.1 118 35-152 21-138 (151)
28 2pzi_A Probable serine/threoni 99.9 2E-22 6.9E-27 172.9 14.5 159 1-160 410-576 (681)
29 1xnf_A Lipoprotein NLPI; TPR, 99.9 4.6E-21 1.6E-25 146.4 20.6 169 1-169 24-266 (275)
30 3uq3_A Heat shock protein STI1 99.9 2.5E-21 8.6E-26 146.3 18.8 165 1-166 24-221 (258)
31 3hym_B Cell division cycle pro 99.9 4.6E-21 1.6E-25 150.0 20.7 147 2-148 76-223 (330)
32 4gco_A Protein STI-1; structur 99.9 1.2E-21 4E-26 132.9 14.4 121 41-161 4-124 (126)
33 3gyz_A Chaperone protein IPGC; 99.9 5.4E-22 1.8E-26 138.5 12.8 115 4-118 24-138 (151)
34 3u4t_A TPR repeat-containing p 99.9 2.9E-21 9.8E-26 147.5 17.9 164 1-165 22-189 (272)
35 2vsy_A XCC0866; transferase, g 99.9 3.5E-21 1.2E-25 162.2 20.1 152 1-152 8-162 (568)
36 1fch_A Peroxisomal targeting s 99.9 1.8E-20 6.2E-25 149.0 23.2 165 1-165 83-298 (368)
37 2ho1_A Type 4 fimbrial biogene 99.9 1.1E-20 3.9E-25 142.6 20.7 156 1-156 90-247 (252)
38 3ieg_A DNAJ homolog subfamily 99.9 1.4E-20 4.7E-25 148.7 21.9 164 1-164 22-200 (359)
39 3hym_B Cell division cycle pro 99.9 1.6E-20 5.3E-25 146.9 21.4 163 1-163 41-204 (330)
40 3ieg_A DNAJ homolog subfamily 99.9 2.2E-20 7.7E-25 147.5 22.3 161 3-163 175-351 (359)
41 1fch_A Peroxisomal targeting s 99.9 2E-20 7E-25 148.7 22.2 151 1-151 117-318 (368)
42 4abn_A Tetratricopeptide repea 99.9 3.7E-21 1.3E-25 158.6 17.1 164 2-166 88-272 (474)
43 2y4t_A DNAJ homolog subfamily 99.9 4.4E-20 1.5E-24 150.7 22.7 166 1-166 196-377 (450)
44 2vq2_A PILW, putative fimbrial 99.9 7E-20 2.4E-24 135.5 20.1 157 1-157 61-221 (225)
45 3qky_A Outer membrane assembly 99.9 4.2E-20 1.4E-24 140.6 19.3 149 9-157 8-187 (261)
46 1p5q_A FKBP52, FK506-binding p 99.9 8.2E-21 2.8E-25 149.9 15.7 147 1-147 132-294 (336)
47 2vgx_A Chaperone SYCD; alterna 99.9 4E-21 1.4E-25 134.0 12.0 114 4-117 9-122 (148)
48 2ond_A Cleavage stimulation fa 99.9 5E-20 1.7E-24 143.7 19.6 162 1-162 35-213 (308)
49 2vgx_A Chaperone SYCD; alterna 99.9 5.7E-21 1.9E-25 133.2 12.6 129 35-163 6-134 (148)
50 2y4t_A DNAJ homolog subfamily 99.9 7.6E-20 2.6E-24 149.3 21.2 162 1-162 45-221 (450)
51 3u4t_A TPR repeat-containing p 99.9 8.2E-21 2.8E-25 144.9 14.4 147 1-148 56-209 (272)
52 2yhc_A BAMD, UPF0169 lipoprote 99.9 6.1E-20 2.1E-24 136.8 18.3 149 2-150 24-216 (225)
53 2xpi_A Anaphase-promoting comp 99.9 8.6E-20 2.9E-24 154.1 20.6 163 1-163 392-561 (597)
54 2xcb_A PCRH, regulatory protei 99.9 6.1E-21 2.1E-25 132.1 11.0 117 4-120 6-122 (142)
55 3mkr_A Coatomer subunit epsilo 99.9 1.6E-19 5.6E-24 139.7 20.1 160 1-165 84-247 (291)
56 2fo7_A Synthetic consensus TPR 99.8 2.9E-19 9.8E-24 121.4 18.9 134 17-150 2-135 (136)
57 2ond_A Cleavage stimulation fa 99.8 2.3E-19 7.9E-24 139.9 20.7 147 1-147 83-232 (308)
58 3cv0_A Peroxisome targeting si 99.8 8.5E-20 2.9E-24 142.6 17.7 163 1-163 40-251 (327)
59 3mkr_A Coatomer subunit epsilo 99.8 1.6E-19 5.5E-24 139.7 18.9 153 13-166 127-282 (291)
60 2xpi_A Anaphase-promoting comp 99.8 2.8E-19 9.7E-24 150.9 22.0 148 1-148 358-505 (597)
61 3cv0_A Peroxisome targeting si 99.8 3.7E-20 1.3E-24 144.6 15.0 150 1-150 157-318 (327)
62 2r5s_A Uncharacterized protein 99.8 1.8E-20 6.2E-25 134.4 11.3 150 13-163 3-155 (176)
63 3as5_A MAMA; tetratricopeptide 99.8 4.4E-19 1.5E-23 127.1 18.3 149 15-163 7-155 (186)
64 2xcb_A PCRH, regulatory protei 99.8 5.1E-20 1.8E-24 127.4 12.6 127 37-163 5-131 (142)
65 2gw1_A Mitochondrial precursor 99.8 1.6E-19 5.6E-24 149.4 17.0 154 2-155 324-486 (514)
66 3qou_A Protein YBBN; thioredox 99.8 7.8E-19 2.7E-23 135.6 18.9 155 12-166 113-269 (287)
67 3urz_A Uncharacterized protein 99.8 1.4E-19 4.9E-24 133.2 14.0 135 15-149 3-155 (208)
68 3upv_A Heat shock protein STI1 99.8 3.8E-19 1.3E-23 120.3 15.0 118 13-130 1-124 (126)
69 3fp2_A TPR repeat-containing p 99.8 2E-19 6.7E-24 149.9 16.3 150 1-151 262-411 (537)
70 3fp2_A TPR repeat-containing p 99.8 7.1E-19 2.4E-23 146.5 19.3 164 1-165 221-391 (537)
71 2gw1_A Mitochondrial precursor 99.8 3.1E-19 1.1E-23 147.8 16.3 160 1-160 289-457 (514)
72 2e2e_A Formate-dependent nitri 99.8 4.7E-19 1.6E-23 126.9 15.1 135 26-160 20-157 (177)
73 3qou_A Protein YBBN; thioredox 99.8 1.4E-19 4.9E-24 139.8 13.1 146 1-146 136-283 (287)
74 1qqe_A Vesicular transport pro 99.8 1.7E-19 5.9E-24 139.6 13.0 152 1-152 56-233 (292)
75 1a17_A Serine/threonine protei 99.8 2.6E-18 8.9E-23 121.3 18.0 134 15-148 12-147 (166)
76 2yhc_A BAMD, UPF0169 lipoprote 99.8 2.2E-18 7.4E-23 128.4 18.4 145 15-159 3-188 (225)
77 2pzi_A Probable serine/threoni 99.8 6E-19 2E-23 151.5 17.1 132 1-133 452-583 (681)
78 2r5s_A Uncharacterized protein 99.8 3.1E-19 1.1E-23 127.9 12.7 145 1-146 25-172 (176)
79 1hh8_A P67PHOX, NCF-2, neutrop 99.8 2E-18 7E-23 127.1 17.2 134 16-152 6-155 (213)
80 2vyi_A SGTA protein; chaperone 99.8 1.5E-18 5.3E-23 117.2 15.0 125 10-134 6-130 (131)
81 3dra_A Protein farnesyltransfe 99.8 1.2E-17 3.9E-22 129.3 20.9 167 1-167 52-235 (306)
82 3upv_A Heat shock protein STI1 99.8 2.2E-18 7.6E-23 116.5 15.0 117 47-163 1-123 (126)
83 2lni_A Stress-induced-phosphop 99.8 1.7E-18 5.9E-23 117.6 14.0 122 12-133 12-133 (133)
84 1kt0_A FKBP51, 51 kDa FK506-bi 99.8 5.7E-19 2E-23 144.9 13.5 145 1-145 253-413 (457)
85 2e2e_A Formate-dependent nitri 99.8 3.2E-18 1.1E-22 122.6 15.7 121 1-121 29-152 (177)
86 3sz7_A HSC70 cochaperone (SGT) 99.8 1.8E-18 6E-23 122.5 14.1 103 50-152 11-113 (164)
87 3edt_B KLC 2, kinesin light ch 99.8 7.9E-19 2.7E-23 134.1 12.0 149 1-149 20-200 (283)
88 2fbn_A 70 kDa peptidylprolyl i 99.8 2.3E-18 7.7E-23 125.7 13.2 134 12-145 34-184 (198)
89 1na0_A Designed protein CTPR3; 99.8 3.8E-17 1.3E-21 109.4 17.4 122 11-132 3-125 (125)
90 3q49_B STIP1 homology and U bo 99.8 8.6E-18 2.9E-22 115.0 14.3 118 11-128 4-126 (137)
91 3sz7_A HSC70 cochaperone (SGT) 99.8 2E-17 7E-22 117.0 16.2 117 12-128 7-123 (164)
92 1dce_A Protein (RAB geranylger 99.8 1.7E-17 5.8E-22 139.1 18.2 166 1-166 48-240 (567)
93 3edt_B KLC 2, kinesin light ch 99.8 4.1E-18 1.4E-22 130.1 13.0 148 1-148 62-282 (283)
94 2c2l_A CHIP, carboxy terminus 99.8 5.3E-18 1.8E-22 130.5 13.5 146 13-160 1-177 (281)
95 4gcn_A Protein STI-1; structur 99.8 1E-17 3.6E-22 113.5 13.4 101 15-115 7-114 (127)
96 1p5q_A FKBP52, FK506-binding p 99.8 2.4E-20 8.3E-25 147.2 0.2 136 28-163 125-275 (336)
97 2hr2_A Hypothetical protein; a 99.8 5.3E-18 1.8E-22 117.4 11.5 129 16-166 11-150 (159)
98 3nf1_A KLC 1, kinesin light ch 99.8 4.4E-18 1.5E-22 131.8 12.0 150 1-150 88-310 (311)
99 1elw_A TPR1-domain of HOP; HOP 99.8 7.8E-17 2.7E-21 106.8 16.2 114 15-128 3-116 (118)
100 3q7a_A Farnesyltransferase alp 99.8 1E-16 3.5E-21 125.3 19.2 168 1-168 73-258 (349)
101 4g1t_A Interferon-induced prot 99.8 4.1E-17 1.4E-21 134.0 17.9 151 1-151 194-367 (472)
102 1qqe_A Vesicular transport pro 99.8 6.8E-18 2.3E-22 130.7 12.4 153 1-153 96-275 (292)
103 2ooe_A Cleavage stimulation fa 99.8 5.1E-17 1.8E-21 135.7 18.4 160 2-161 258-434 (530)
104 4g1t_A Interferon-induced prot 99.8 5.5E-17 1.9E-21 133.2 18.1 162 1-162 232-416 (472)
105 1hxi_A PEX5, peroxisome target 99.8 1.7E-17 5.7E-22 111.5 12.3 99 19-117 20-118 (121)
106 3q49_B STIP1 homology and U bo 99.8 8.2E-17 2.8E-21 110.1 16.0 107 44-150 3-109 (137)
107 2fbn_A 70 kDa peptidylprolyl i 99.8 4.4E-18 1.5E-22 124.2 9.9 153 15-167 3-171 (198)
108 3rkv_A Putative peptidylprolyl 99.8 1.4E-17 4.9E-22 117.5 12.3 104 15-118 10-131 (162)
109 3ulq_A Response regulator aspa 99.8 1.3E-17 4.4E-22 133.7 13.2 150 1-150 122-296 (383)
110 1xnf_A Lipoprotein NLPI; TPR, 99.7 4.2E-18 1.4E-22 129.9 9.8 133 21-153 10-146 (275)
111 3dss_A Geranylgeranyl transfer 99.7 2E-16 6.9E-21 123.1 19.3 163 1-163 49-238 (331)
112 2vsy_A XCC0866; transferase, g 99.7 4.9E-17 1.7E-21 136.9 17.2 137 29-165 2-138 (568)
113 4gcn_A Protein STI-1; structur 99.7 3E-17 1E-21 111.2 12.9 102 49-150 7-115 (127)
114 2dba_A Smooth muscle cell asso 99.7 9.5E-17 3.3E-21 111.0 15.4 118 12-129 24-144 (148)
115 2ooe_A Cleavage stimulation fa 99.7 1.2E-16 4E-21 133.5 18.9 152 1-152 305-459 (530)
116 2hr2_A Hypothetical protein; a 99.7 2E-17 6.8E-22 114.5 11.7 98 1-120 30-138 (159)
117 1ouv_A Conserved hypothetical 99.7 1.2E-15 4.1E-20 116.6 22.4 140 1-148 25-180 (273)
118 1hxi_A PEX5, peroxisome target 99.7 3.5E-17 1.2E-21 109.9 12.1 101 51-151 18-118 (121)
119 3rjv_A Putative SEL1 repeat pr 99.7 2.4E-16 8.1E-21 116.3 17.7 154 1-162 5-172 (212)
120 3nf1_A KLC 1, kinesin light ch 99.7 3.1E-17 1.1E-21 127.0 12.9 150 1-150 46-227 (311)
121 2if4_A ATFKBP42; FKBP-like, al 99.7 1.5E-18 5.2E-23 137.0 5.4 145 8-152 171-333 (338)
122 2fo7_A Synthetic consensus TPR 99.7 2.2E-16 7.5E-21 106.9 15.0 117 1-117 20-136 (136)
123 1ouv_A Conserved hypothetical 99.7 2.1E-15 7.1E-20 115.3 22.0 141 1-149 61-217 (273)
124 3rkv_A Putative peptidylprolyl 99.7 1.4E-16 4.8E-21 112.4 14.3 117 50-166 11-146 (162)
125 3dss_A Geranylgeranyl transfer 99.7 7.4E-16 2.5E-20 119.9 19.6 164 2-165 94-285 (331)
126 1wao_1 Serine/threonine protei 99.7 9.8E-19 3.3E-23 144.2 3.6 137 14-150 4-153 (477)
127 2xev_A YBGF; tetratricopeptide 99.7 3.2E-16 1.1E-20 106.0 15.4 113 18-130 4-122 (129)
128 2lni_A Stress-induced-phosphop 99.7 3.4E-16 1.2E-20 106.1 15.1 117 46-162 12-128 (133)
129 2kck_A TPR repeat; tetratricop 99.7 9E-17 3.1E-21 105.6 11.5 105 12-116 2-109 (112)
130 1elw_A TPR1-domain of HOP; HOP 99.7 7.5E-16 2.6E-20 102.0 15.9 113 49-161 3-115 (118)
131 2qfc_A PLCR protein; TPR, HTH, 99.7 7.2E-16 2.5E-20 119.2 18.1 147 2-148 95-267 (293)
132 2ifu_A Gamma-SNAP; membrane fu 99.7 1.1E-16 3.7E-21 124.7 13.4 150 1-152 55-228 (307)
133 3u3w_A Transcriptional activat 99.7 2.5E-16 8.7E-21 121.8 15.2 148 1-148 94-267 (293)
134 2kck_A TPR repeat; tetratricop 99.7 1.3E-16 4.5E-21 104.7 11.7 107 45-151 1-110 (112)
135 3q15_A PSP28, response regulat 99.7 3E-16 1E-20 125.6 15.7 150 1-150 120-293 (378)
136 2dba_A Smooth muscle cell asso 99.7 1.2E-15 4.2E-20 105.3 16.5 117 45-161 23-142 (148)
137 1elr_A TPR2A-domain of HOP; HO 99.7 2.1E-16 7.2E-21 106.7 12.3 117 14-131 2-125 (131)
138 2vyi_A SGTA protein; chaperone 99.7 6.3E-16 2.2E-20 104.2 14.6 120 46-165 8-127 (131)
139 4a1s_A PINS, partner of inscut 99.7 7.7E-17 2.6E-21 130.0 11.2 150 1-150 67-255 (411)
140 2xev_A YBGF; tetratricopeptide 99.7 1.1E-15 3.9E-20 103.2 15.2 112 51-162 3-120 (129)
141 1na0_A Designed protein CTPR3; 99.7 3E-15 1E-19 100.0 17.0 117 46-162 4-121 (125)
142 1hh8_A P67PHOX, NCF-2, neutrop 99.7 7.7E-16 2.6E-20 113.2 14.6 113 2-117 26-154 (213)
143 3sf4_A G-protein-signaling mod 99.7 2.1E-16 7.2E-21 126.8 12.5 150 1-150 166-339 (406)
144 1ihg_A Cyclophilin 40; ppiase 99.7 5.2E-16 1.8E-20 123.8 14.4 125 15-139 222-362 (370)
145 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 2.5E-17 8.7E-22 135.1 6.8 139 28-166 246-399 (457)
146 4f3v_A ESX-1 secretion system 99.7 7.7E-16 2.6E-20 116.8 14.0 130 23-154 109-243 (282)
147 3sf4_A G-protein-signaling mod 99.7 1.6E-16 5.6E-21 127.5 10.5 150 1-150 28-219 (406)
148 3dra_A Protein farnesyltransfe 99.7 1.2E-15 4.2E-20 117.9 14.7 155 2-156 130-297 (306)
149 3rjv_A Putative SEL1 repeat pr 99.7 2.4E-15 8E-20 110.9 15.5 143 1-149 37-199 (212)
150 3ro2_A PINS homolog, G-protein 99.7 3E-16 1E-20 122.4 10.9 150 1-150 24-215 (338)
151 1elr_A TPR2A-domain of HOP; HO 99.7 2.6E-15 8.7E-20 101.3 13.4 117 49-166 3-126 (131)
152 3ro2_A PINS homolog, G-protein 99.7 4.9E-16 1.7E-20 121.2 10.3 149 2-150 163-335 (338)
153 1a17_A Serine/threonine protei 99.7 1.3E-14 4.5E-19 102.0 16.7 106 50-155 13-118 (166)
154 3gw4_A Uncharacterized protein 99.7 2.8E-15 9.7E-20 109.1 13.6 139 12-150 21-179 (203)
155 1zu2_A Mitochondrial import re 99.7 8.3E-16 2.8E-20 106.1 9.9 90 28-117 14-124 (158)
156 4a1s_A PINS, partner of inscut 99.7 3.6E-16 1.2E-20 126.1 9.4 150 1-150 105-295 (411)
157 3ro3_A PINS homolog, G-protein 99.6 2.5E-15 8.5E-20 105.0 12.2 136 15-150 8-161 (164)
158 3k9i_A BH0479 protein; putativ 99.6 3.7E-16 1.3E-20 104.2 7.5 92 29-120 3-97 (117)
159 3ulq_A Response regulator aspa 99.6 2.9E-15 9.8E-20 120.0 13.9 129 19-147 106-253 (383)
160 1zu2_A Mitochondrial import re 99.6 1.1E-15 3.7E-20 105.5 9.2 103 61-163 13-136 (158)
161 3k9i_A BH0479 protein; putativ 99.6 2.5E-15 8.7E-20 100.1 10.0 96 1-96 9-107 (117)
162 2c2l_A CHIP, carboxy terminus 99.6 7.1E-15 2.4E-19 113.0 13.6 105 47-151 1-105 (281)
163 1dce_A Protein (RAB geranylger 99.6 4E-16 1.4E-20 130.9 5.9 150 1-150 92-270 (567)
164 2qfc_A PLCR protein; TPR, HTH, 99.6 2E-13 6.7E-18 105.5 20.7 139 12-150 71-228 (293)
165 3q15_A PSP28, response regulat 99.6 1.5E-14 5E-19 115.8 13.5 148 1-148 160-366 (378)
166 1wao_1 Serine/threonine protei 99.6 1.8E-15 6.2E-20 124.7 7.9 117 1-117 25-154 (477)
167 1ihg_A Cyclophilin 40; ppiase 99.6 4.3E-14 1.5E-18 112.8 14.4 117 50-166 223-355 (370)
168 2ifu_A Gamma-SNAP; membrane fu 99.6 3.5E-14 1.2E-18 110.5 12.5 134 17-151 37-188 (307)
169 1hz4_A MALT regulatory protein 99.6 1E-13 3.4E-18 110.5 14.7 150 1-150 33-206 (373)
170 2xm6_A Protein corresponding t 99.5 9.7E-13 3.3E-17 108.8 20.6 128 15-148 290-433 (490)
171 2if4_A ATFKBP42; FKBP-like, al 99.5 8.8E-15 3E-19 115.4 7.4 118 1-118 198-333 (338)
172 2kat_A Uncharacterized protein 99.5 9.3E-14 3.2E-18 92.0 10.6 80 2-81 5-84 (115)
173 3mv2_B Coatomer subunit epsilo 99.5 9.5E-13 3.3E-17 101.1 17.4 145 1-148 85-241 (310)
174 3u3w_A Transcriptional activat 99.5 3.9E-13 1.4E-17 103.8 15.2 133 18-150 77-228 (293)
175 2l6j_A TPR repeat-containing p 99.5 1.1E-14 3.9E-19 95.5 5.6 93 16-108 4-102 (111)
176 3q7a_A Farnesyltransferase alp 99.5 7.2E-13 2.5E-17 103.6 16.2 151 13-163 51-212 (349)
177 2kat_A Uncharacterized protein 99.5 3.1E-13 1.1E-17 89.4 11.9 83 68-150 3-85 (115)
178 3e4b_A ALGK; tetratricopeptide 99.5 1.2E-12 4E-17 107.3 17.4 138 1-147 198-351 (452)
179 2xm6_A Protein corresponding t 99.5 4E-12 1.4E-16 105.1 20.5 138 2-147 63-216 (490)
180 1na3_A Designed protein CTPR2; 99.5 4.3E-13 1.5E-17 84.6 11.4 83 15-97 8-90 (91)
181 3mv2_B Coatomer subunit epsilo 99.5 1E-12 3.4E-17 101.0 14.8 153 1-158 119-293 (310)
182 2l6j_A TPR repeat-containing p 99.5 2.6E-14 9E-19 93.7 5.3 94 49-142 3-102 (111)
183 1na3_A Designed protein CTPR2; 99.5 6.8E-13 2.3E-17 83.6 10.9 85 48-132 7-91 (91)
184 3e4b_A ALGK; tetratricopeptide 99.5 1.7E-12 5.8E-17 106.3 16.0 140 14-162 174-328 (452)
185 3gw4_A Uncharacterized protein 99.4 2.1E-12 7.2E-17 93.7 12.7 125 26-150 2-139 (203)
186 1hz4_A MALT regulatory protein 99.4 4.1E-12 1.4E-16 101.1 14.4 135 16-150 14-167 (373)
187 3ma5_A Tetratricopeptide repea 99.4 2.3E-12 8E-17 83.1 10.4 70 12-81 3-72 (100)
188 3ma5_A Tetratricopeptide repea 99.4 5E-12 1.7E-16 81.5 10.4 71 80-150 3-73 (100)
189 2kc7_A BFR218_protein; tetratr 99.4 1.3E-12 4.4E-17 83.9 7.3 88 55-150 5-93 (99)
190 2kc7_A BFR218_protein; tetratr 99.4 1.4E-12 4.8E-17 83.8 7.1 91 19-117 3-94 (99)
191 4f3v_A ESX-1 secretion system 99.4 3.1E-12 1.1E-16 97.0 9.1 121 3-125 123-248 (282)
192 3ly7_A Transcriptional activat 99.3 7.1E-11 2.4E-15 92.4 16.6 143 8-151 186-343 (372)
193 3ro3_A PINS homolog, G-protein 99.3 3.9E-12 1.3E-16 88.5 8.7 116 1-116 28-161 (164)
194 4e6h_A MRNA 3'-END-processing 99.3 6.5E-11 2.2E-15 101.0 17.6 150 3-152 330-504 (679)
195 1xi4_A Clathrin heavy chain; a 99.3 7.5E-11 2.6E-15 105.5 18.3 155 3-162 1090-1324(1630)
196 3n71_A Histone lysine methyltr 99.3 1.6E-11 5.3E-16 101.0 12.0 129 20-148 313-465 (490)
197 4b4t_Q 26S proteasome regulato 99.3 3.1E-11 1E-15 97.9 13.3 150 1-150 23-207 (434)
198 4e6h_A MRNA 3'-END-processing 99.3 1.2E-10 4.2E-15 99.3 17.4 148 3-150 365-536 (679)
199 1klx_A Cysteine rich protein B 99.3 1.4E-10 4.7E-15 79.3 13.9 111 30-148 9-127 (138)
200 1klx_A Cysteine rich protein B 99.3 1.5E-10 5E-15 79.2 13.8 115 1-125 14-136 (138)
201 3ly7_A Transcriptional activat 99.2 9.2E-11 3.1E-15 91.8 11.7 117 1-118 218-344 (372)
202 3u64_A Protein TP_0956; tetrat 99.2 7E-10 2.4E-14 83.6 15.8 150 2-151 52-273 (301)
203 3bee_A Putative YFRE protein; 99.2 5.9E-10 2E-14 70.5 11.9 71 80-150 2-75 (93)
204 1b89_A Protein (clathrin heavy 99.1 5.2E-10 1.8E-14 89.8 12.4 134 16-166 122-255 (449)
205 3bee_A Putative YFRE protein; 99.1 7.5E-10 2.6E-14 70.0 10.3 72 12-83 2-76 (93)
206 1pc2_A Mitochondria fission pr 99.1 1.4E-09 4.7E-14 74.3 11.5 103 65-167 13-120 (152)
207 1pc2_A Mitochondria fission pr 99.1 2.3E-09 8E-14 73.2 11.4 96 32-127 14-114 (152)
208 3n71_A Histone lysine methyltr 99.0 4.3E-10 1.5E-14 92.5 7.9 114 1-114 328-465 (490)
209 2uy1_A Cleavage stimulation fa 99.0 3.1E-08 1E-12 81.9 18.4 140 3-144 200-380 (493)
210 1xi4_A Clathrin heavy chain; a 99.0 1.9E-08 6.4E-13 90.4 17.9 112 22-150 1055-1166(1630)
211 2v5f_A Prolyl 4-hydroxylase su 99.0 8.4E-09 2.9E-13 66.7 11.1 77 15-91 4-87 (104)
212 4b4t_Q 26S proteasome regulato 99.0 8.7E-09 3E-13 83.4 13.6 134 16-149 4-166 (434)
213 3u64_A Protein TP_0956; tetrat 99.0 7.3E-09 2.5E-13 78.1 11.1 112 5-116 140-272 (301)
214 1b89_A Protein (clathrin heavy 99.0 7.3E-09 2.5E-13 83.2 11.8 141 17-166 149-296 (449)
215 2v5f_A Prolyl 4-hydroxylase su 99.0 1.4E-08 4.8E-13 65.6 11.2 77 49-125 4-87 (104)
216 3qww_A SET and MYND domain-con 98.9 8.9E-09 3.1E-13 83.4 10.3 87 62-148 310-412 (433)
217 3qww_A SET and MYND domain-con 98.9 2.9E-08 1E-12 80.4 12.1 96 26-121 308-424 (433)
218 3qwp_A SET and MYND domain-con 98.9 1.5E-08 5.2E-13 82.1 10.2 103 60-162 297-420 (429)
219 3qwp_A SET and MYND domain-con 98.9 4.2E-08 1.4E-12 79.5 12.8 101 21-121 292-413 (429)
220 1nzn_A CGI-135 protein, fissio 98.7 5.4E-07 1.8E-11 59.3 11.0 94 67-160 18-116 (126)
221 4h7y_A Dual specificity protei 98.6 2.1E-06 7.2E-11 57.8 13.5 120 45-168 8-141 (161)
222 1nzn_A CGI-135 protein, fissio 98.6 9E-07 3.1E-11 58.3 11.6 98 30-127 15-117 (126)
223 4h7y_A Dual specificity protei 98.6 2.1E-06 7.3E-11 57.8 12.0 111 10-121 7-131 (161)
224 2uy1_A Cleavage stimulation fa 98.6 1.6E-05 5.4E-10 65.7 19.6 119 32-152 195-354 (493)
225 4g26_A Pentatricopeptide repea 98.5 5E-05 1.7E-09 62.8 20.5 150 1-150 45-209 (501)
226 3ffl_A Anaphase-promoting comp 98.2 3.9E-05 1.3E-09 52.8 11.2 114 18-143 22-147 (167)
227 3o48_A Mitochondria fission 1 98.0 0.00012 4.1E-09 48.3 11.0 82 83-164 39-124 (134)
228 4g26_A Pentatricopeptide repea 98.0 0.0011 3.8E-08 54.8 19.5 133 18-150 28-174 (501)
229 1y8m_A FIS1; mitochondria, unk 98.0 0.0002 6.8E-09 47.9 12.0 86 81-166 36-125 (144)
230 1y8m_A FIS1; mitochondria, unk 98.0 0.00044 1.5E-08 46.2 13.4 81 47-127 36-120 (144)
231 3o48_A Mitochondria fission 1 98.0 0.00015 5E-09 47.9 10.8 79 49-127 39-121 (134)
232 3ffl_A Anaphase-promoting comp 97.9 9.8E-05 3.3E-09 50.8 9.4 64 50-113 20-92 (167)
233 4gns_B Protein CSD3, chitin bi 97.8 0.00053 1.8E-08 59.1 13.3 116 28-144 260-397 (754)
234 4gns_B Protein CSD3, chitin bi 97.4 0.0016 5.5E-08 56.1 10.8 108 2-110 269-397 (754)
235 3kae_A CDC27, possible protein 97.1 0.026 8.8E-07 39.0 12.4 115 28-150 14-146 (242)
236 1ya0_A SMG-7 transcript varian 97.1 0.0074 2.5E-07 49.6 11.6 80 17-96 153-232 (497)
237 1zbp_A Hypothetical protein VP 97.0 0.045 1.5E-06 40.9 14.2 121 24-151 5-133 (273)
238 3mkq_B Coatomer subunit alpha; 96.9 0.05 1.7E-06 38.0 14.6 109 15-144 7-115 (177)
239 1ya0_A SMG-7 transcript varian 96.9 0.013 4.5E-07 48.2 11.3 79 52-130 154-232 (497)
240 3kae_A CDC27, possible protein 96.8 0.06 2E-06 37.2 16.1 29 122-150 212-240 (242)
241 3txn_A 26S proteasome regulato 96.8 0.045 1.6E-06 43.6 13.4 134 16-149 19-212 (394)
242 2ff4_A Probable regulatory pro 96.8 0.057 1.9E-06 43.0 14.0 86 61-146 126-233 (388)
243 2ff4_A Probable regulatory pro 96.7 0.055 1.9E-06 43.1 13.8 91 22-112 121-233 (388)
244 3mkq_A Coatomer beta'-subunit; 96.7 0.11 3.7E-06 45.2 16.5 127 24-166 660-794 (814)
245 3spa_A Mtrpol, DNA-directed RN 96.6 0.3 1E-05 43.7 18.3 119 51-169 128-259 (1134)
246 3mkq_A Coatomer beta'-subunit; 96.5 0.043 1.5E-06 47.8 12.4 107 19-141 632-746 (814)
247 3spa_A Mtrpol, DNA-directed RN 96.4 0.14 4.9E-06 45.7 15.1 97 17-114 128-231 (1134)
248 4fhn_B Nucleoporin NUP120; pro 96.2 0.13 4.3E-06 47.1 14.2 118 22-143 818-963 (1139)
249 4b4t_S RPN3, 26S proteasome re 96.2 0.018 6.1E-07 47.3 7.8 128 23-152 143-304 (523)
250 3mkq_B Coatomer subunit alpha; 96.2 0.094 3.2E-06 36.6 10.4 92 5-109 21-114 (177)
251 1zbp_A Hypothetical protein VP 96.2 0.053 1.8E-06 40.5 9.5 61 59-119 6-66 (273)
252 3txn_A 26S proteasome regulato 96.0 0.11 3.7E-06 41.4 11.2 114 20-133 103-235 (394)
253 4b4t_R RPN7, 26S proteasome re 95.9 0.037 1.3E-06 44.7 8.6 100 49-148 130-238 (429)
254 4fhn_B Nucleoporin NUP120; pro 95.8 0.23 8E-06 45.4 14.0 124 8-132 834-985 (1139)
255 4b4t_R RPN7, 26S proteasome re 95.4 0.099 3.4E-06 42.3 9.3 100 16-115 131-239 (429)
256 4b4t_P 26S proteasome regulato 95.2 0.56 1.9E-05 38.1 13.2 98 16-113 137-247 (445)
257 1qsa_A Protein (soluble lytic 94.9 0.67 2.3E-05 39.3 13.0 125 21-146 219-347 (618)
258 4b4t_P 26S proteasome regulato 94.7 0.97 3.3E-05 36.7 13.2 96 52-147 139-247 (445)
259 4b4t_S RPN3, 26S proteasome re 94.7 0.48 1.6E-05 39.0 11.2 104 12-117 177-303 (523)
260 4gq2_M Nucleoporin NUP120; bet 92.8 2.7 9.3E-05 37.7 13.5 30 119-148 898-927 (950)
261 3esl_A Checkpoint serine/threo 89.9 3.9 0.00014 29.1 9.3 66 50-116 80-147 (202)
262 1wy6_A Hypothetical protein ST 88.2 3.5 0.00012 27.5 7.4 55 59-113 100-154 (172)
263 2ijq_A Hypothetical protein; s 86.8 5.7 0.0002 27.1 8.3 76 88-163 36-125 (161)
264 4gq2_M Nucleoporin NUP120; bet 86.5 17 0.00059 32.6 13.4 88 22-113 816-926 (950)
265 3ax2_A Mitochondrial import re 84.9 3.9 0.00013 23.8 5.7 29 122-150 21-49 (73)
266 1qsa_A Protein (soluble lytic 84.8 17 0.00059 30.8 15.6 120 21-142 290-437 (618)
267 1wy6_A Hypothetical protein ST 83.9 7.5 0.00026 26.0 7.8 120 23-147 14-154 (172)
268 3ax2_A Mitochondrial import re 82.5 5.3 0.00018 23.2 5.7 28 21-48 22-49 (73)
269 2wvi_A Mitotic checkpoint seri 82.5 5.6 0.00019 27.3 6.7 61 51-117 67-129 (164)
270 3t5x_A PCI domain-containing p 81.1 6.5 0.00022 28.0 7.0 52 16-67 14-70 (203)
271 3lpz_A GET4 (YOR164C homolog); 79.5 20 0.00068 27.8 15.4 25 18-42 37-61 (336)
272 3t5v_B Nuclear mRNA export pro 79.0 7.8 0.00027 31.5 7.5 87 65-151 141-254 (455)
273 2wpv_A GET4, UPF0363 protein Y 78.5 20 0.0007 27.4 14.8 24 19-42 36-59 (312)
274 1om2_A Protein (mitochondrial 78.3 7.4 0.00025 23.9 5.5 29 122-150 24-52 (95)
275 2ijq_A Hypothetical protein; s 77.4 14 0.00049 25.1 8.2 26 21-46 37-62 (161)
276 2crb_A Nuclear receptor bindin 77.1 6.2 0.00021 24.0 4.8 28 16-43 15-42 (97)
277 3t5v_B Nuclear mRNA export pro 76.7 9 0.00031 31.1 7.2 64 54-117 180-254 (455)
278 4aez_C MAD3, mitotic spindle c 76.0 20 0.00067 26.0 11.3 128 32-168 51-197 (223)
279 4aez_C MAD3, mitotic spindle c 75.5 6.6 0.00023 28.4 5.5 61 51-117 121-183 (223)
280 3esl_A Checkpoint serine/threo 75.3 19 0.00066 25.5 13.2 95 71-169 58-163 (202)
281 4a1g_A Mitotic checkpoint seri 74.2 7.5 0.00026 26.3 5.2 61 51-117 72-134 (152)
282 3t5x_A PCI domain-containing p 74.0 10 0.00034 27.0 6.2 50 51-100 15-69 (203)
283 2crb_A Nuclear receptor bindin 72.5 7.9 0.00027 23.5 4.4 26 52-77 17-42 (97)
284 2rpa_A Katanin P60 ATPase-cont 71.7 4.4 0.00015 23.9 3.2 27 19-45 15-41 (78)
285 2cwy_A Hypothetical protein TT 67.7 18 0.00062 22.1 6.1 56 90-147 7-68 (94)
286 1om2_A Protein (mitochondrial 66.8 9 0.00031 23.5 3.9 27 21-47 25-51 (95)
287 3bu8_A Telomeric repeat-bindin 65.9 34 0.0012 24.6 8.5 35 59-93 123-157 (235)
288 2cfu_A SDSA1; SDS-hydrolase, l 63.0 22 0.00075 30.5 7.0 49 51-99 450-498 (658)
289 3re2_A Predicted protein; meni 59.9 40 0.0014 26.5 7.1 28 84-111 296-323 (472)
290 2cfu_A SDSA1; SDS-hydrolase, l 57.7 25 0.00084 30.1 6.5 48 85-132 450-497 (658)
291 2w2u_A Hypothetical P60 katani 56.7 27 0.00094 20.7 4.8 22 125-146 26-47 (83)
292 2w2u_A Hypothetical P60 katani 55.1 30 0.001 20.5 4.8 15 62-76 31-45 (83)
293 3bqo_A Telomeric repeat-bindin 54.5 15 0.00052 26.0 3.8 30 58-87 125-154 (211)
294 2cwy_A Hypothetical protein TT 52.7 37 0.0013 20.7 6.3 55 56-112 7-67 (94)
295 2rpa_A Katanin P60 ATPase-cont 52.6 22 0.00074 20.9 3.7 25 88-112 16-40 (78)
296 2v6y_A AAA family ATPase, P60 52.5 34 0.0012 20.2 4.8 21 126-146 19-39 (83)
297 2v6y_A AAA family ATPase, P60 51.0 36 0.0012 20.1 4.8 10 34-43 10-19 (83)
298 2wvi_A Mitotic checkpoint seri 50.8 57 0.0019 22.3 10.9 74 85-167 67-142 (164)
299 3re2_A Predicted protein; meni 50.3 92 0.0031 24.6 10.2 46 103-148 276-326 (472)
300 4gq4_A Menin; tumor suppressor 50.2 88 0.003 25.1 7.8 28 118-145 303-330 (489)
301 4a5x_A MITD1, MIT domain-conta 50.2 38 0.0013 20.2 4.8 23 125-147 23-45 (86)
302 4a5x_A MITD1, MIT domain-conta 49.8 39 0.0013 20.1 4.8 23 21-43 21-43 (86)
303 3u84_A Menin; MLL, JUND, ledgf 48.9 26 0.0009 28.1 4.7 27 50-76 318-344 (550)
304 4ady_A RPN2, 26S proteasome re 46.1 1.7E+02 0.0058 26.4 10.6 126 18-146 457-588 (963)
305 1wfd_A Hypothetical protein 15 44.2 51 0.0018 19.9 4.8 21 126-146 23-43 (93)
306 3u84_A Menin; MLL, JUND, ledgf 43.4 1.3E+02 0.0044 24.3 10.1 45 103-147 298-347 (550)
307 2npu_A FKBP12-rapamycin comple 41.9 69 0.0024 20.8 6.2 55 21-78 45-102 (126)
308 2v6x_A Vacuolar protein sortin 41.1 54 0.0019 19.3 4.8 14 63-76 26-39 (85)
309 4ady_A RPN2, 26S proteasome re 40.1 1.1E+02 0.0038 27.5 7.8 91 18-110 492-586 (963)
310 4a1g_A Mitotic checkpoint seri 39.5 85 0.0029 21.1 12.8 65 101-168 82-148 (152)
311 2cpt_A SKD1 protein, vacuolar 39.4 56 0.0019 20.8 4.5 18 129-146 29-46 (117)
312 3bqo_A Telomeric repeat-bindin 38.4 73 0.0025 22.6 5.2 40 123-162 122-161 (211)
313 3myv_A SUSD superfamily protei 38.0 89 0.003 25.2 6.6 46 33-78 165-218 (454)
314 4b4t_O 26S proteasome regulato 37.5 1.5E+02 0.0051 23.4 10.5 91 57-147 83-198 (393)
315 2ynq_A ESSB; membrane protein, 37.4 95 0.0033 21.1 6.7 83 21-109 13-98 (161)
316 4gq4_A Menin; tumor suppressor 37.3 1.6E+02 0.0056 23.7 9.6 30 83-112 302-331 (489)
317 2cpt_A SKD1 protein, vacuolar 37.0 64 0.0022 20.5 4.5 17 62-78 30-46 (117)
318 3lew_A SUSD-like carbohydrate 36.5 1.2E+02 0.0039 24.9 7.1 28 51-78 204-231 (495)
319 3k66_A Beta-amyloid-like prote 36.1 1.2E+02 0.0042 22.0 7.7 117 28-150 36-157 (239)
320 2uwj_G Type III export protein 35.9 80 0.0027 19.7 7.2 17 56-72 45-61 (115)
321 3myv_A SUSD superfamily protei 34.8 1.3E+02 0.0046 24.1 7.2 46 102-147 166-219 (454)
322 3kez_A Putative sugar binding 34.1 1E+02 0.0035 24.8 6.4 30 118-147 338-367 (461)
323 3bu8_A Telomeric repeat-bindin 33.3 86 0.0029 22.6 4.9 67 66-132 88-162 (235)
324 2p58_C Putative type III secre 32.0 95 0.0032 19.4 9.4 19 55-73 45-63 (116)
325 4b4t_O 26S proteasome regulato 31.5 1.9E+02 0.0065 22.8 12.3 90 23-112 83-197 (393)
326 3lew_A SUSD-like carbohydrate 31.2 1.5E+02 0.005 24.2 6.9 28 85-112 204-231 (495)
327 3mcx_A SUSD superfamily protei 31.1 1.7E+02 0.0057 23.7 7.2 30 84-113 202-231 (477)
328 3lvg_A Clathrin heavy chain 1; 31.0 0.15 5.2E-06 41.8 -10.3 79 48-130 197-275 (624)
329 3kez_A Putative sugar binding 31.0 1.5E+02 0.0051 23.9 6.9 46 102-147 172-225 (461)
330 3mcx_A SUSD superfamily protei 29.8 1.6E+02 0.0055 23.8 6.9 48 101-148 177-232 (477)
331 2e2a_A Protein (enzyme IIA); h 29.0 68 0.0023 20.0 3.5 32 12-43 16-47 (105)
332 1wcr_A PTS system, N, N'-diace 28.3 72 0.0025 19.8 3.5 32 12-43 14-45 (103)
333 2vkj_A TM1634; membrane protei 28.0 1E+02 0.0035 18.6 5.2 32 15-46 52-83 (106)
334 2dl1_A Spartin; SPG20, MIT, st 28.0 92 0.0031 19.8 4.0 16 32-47 19-34 (116)
335 3k1s_A PTS system, cellobiose- 24.7 90 0.0031 19.6 3.5 31 12-42 18-48 (109)
336 3hdx_A SUSD homolog, SUSD supe 24.6 2.3E+02 0.0077 22.9 6.9 27 52-78 199-225 (478)
337 2npu_A FKBP12-rapamycin comple 24.3 1.2E+02 0.0042 19.6 4.1 53 56-111 46-101 (126)
338 2yhe_A SEC-alkyl sulfatase; hy 29.9 16 0.00055 31.3 0.0 44 56-99 467-510 (668)
339 3sl9_C B-cell CLL/lymphoma 9 p 23.9 84 0.0029 16.2 3.3 25 216-241 12-36 (55)
340 3lvg_A Clathrin heavy chain 1; 23.2 0.85 2.9E-05 37.5 -7.4 57 49-110 53-109 (624)
341 3l8r_A PTCA, putative PTS syst 22.3 1.3E+02 0.0043 19.4 3.9 31 12-42 33-63 (120)
342 3qnk_A Putative lipoprotein; a 21.9 3E+02 0.01 22.5 7.1 29 84-112 182-210 (517)
343 2yhe_A SEC-alkyl sulfatase; hy 27.4 19 0.00065 30.9 0.0 51 86-136 463-513 (668)
344 3qnk_A Putative lipoprotein; a 20.0 3.3E+02 0.011 22.3 7.1 30 118-147 182-211 (517)
No 1
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=3e-26 Score=170.24 Aligned_cols=161 Identities=17% Similarity=0.160 Sum_probs=153.5
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHc-----------cCHHHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKA-----------RDVEKA 69 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~A 69 (244)
|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++... |++++|
T Consensus 24 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A 103 (217)
T 2pl2_A 24 ALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQA 103 (217)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 039523 70 LDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITN 149 (244)
Q Consensus 70 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 149 (244)
+..++++++.+|+++.++..+|.++...|++++|+..|+++++++ +++.++..+|.++...|++++|+..|+++++.+|
T Consensus 104 ~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P 182 (217)
T 2pl2_A 104 LSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP 182 (217)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHH
Q 039523 150 NKRIDTELLERIV 162 (244)
Q Consensus 150 ~~~~~~~~l~~~~ 162 (244)
+++.....+..+.
T Consensus 183 ~~~~~~~~la~~~ 195 (217)
T 2pl2_A 183 KDLDLRVRYASAL 195 (217)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHH
Confidence 9776655555443
No 2
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.95 E-value=8.1e-26 Score=163.34 Aligned_cols=151 Identities=16% Similarity=0.205 Sum_probs=144.9
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.++...++++.|...+.+++..+
T Consensus 24 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~ 103 (184)
T 3vtx_A 24 AIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN 103 (184)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK 151 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 151 (244)
|.++.++..+|.++...|++++|+..|+++++.+|+++.++.++|.++..+|++++|+.+|+++++++|++
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 104 TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999874
No 3
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.93 E-value=1.3e-24 Score=174.03 Aligned_cols=164 Identities=10% Similarity=0.067 Sum_probs=148.8
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGE-YETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 79 (244)
|+.+|+++++++|++..+|..+|.++...|+ +++|+..|++++..+|++..+|+.+|.++...|++++|+.+|++++.+
T Consensus 116 Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l 195 (382)
T 2h6f_A 116 AFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ 195 (382)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHhhcCCchh
Q 039523 80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD-VGNIGQA-----LEAVQMVLNITNNKRI 153 (244)
Q Consensus 80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~-~~~~~~A-----~~~~~~al~~~p~~~~ 153 (244)
+|++..+|+++|.++...|++++|+.+|+++++++|++..+|+++|.++.. .|..++| +.+|+++++++|++..
T Consensus 196 dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~ 275 (382)
T 2h6f_A 196 DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES 275 (382)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHH
Confidence 999999999999999999999999999999999999999999999999999 5554777 5899999999999877
Q ss_pred hHHHHHHHHHH
Q 039523 154 DTELLERIVLN 164 (244)
Q Consensus 154 ~~~~l~~~~~~ 164 (244)
.+..+..+...
T Consensus 276 a~~~l~~ll~~ 286 (382)
T 2h6f_A 276 AWNYLKGILQD 286 (382)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHc
Confidence 66666655543
No 4
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.93 E-value=1.9e-24 Score=161.42 Aligned_cols=161 Identities=11% Similarity=0.091 Sum_probs=129.0
Q ss_pred CchHHHHHHhhcc-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 039523 1 MMPAMKKLWKFQM-ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79 (244)
Q Consensus 1 Ai~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 79 (244)
|+..|+++++.+| .+..+++.+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++.
T Consensus 26 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 105 (228)
T 4i17_A 26 AFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA 105 (228)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4677888888877 777888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCcH-------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCH----------------
Q 039523 80 DPENG-------EAWNIIACLHMIKNKSKEAFIAFKEALKLKRN--GWQLWENYSHVALDVGNI---------------- 134 (244)
Q Consensus 80 ~p~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~~~~---------------- 134 (244)
+|+++ .++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.++...|+.
T Consensus 106 ~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~ 185 (228)
T 4i17_A 106 VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKY 185 (228)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHH
Confidence 88877 55788888888888888888888888888888 778888888888877777
Q ss_pred -----------HHHHHHHHHHHhhcCCchhhHHHHHHH
Q 039523 135 -----------GQALEAVQMVLNITNNKRIDTELLERI 161 (244)
Q Consensus 135 -----------~~A~~~~~~al~~~p~~~~~~~~l~~~ 161 (244)
++|+.+++++++++|++......+..+
T Consensus 186 ~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 186 ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 778888888888888866555555444
No 5
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.93 E-value=1.4e-24 Score=186.20 Aligned_cols=150 Identities=21% Similarity=0.282 Sum_probs=111.8
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+.+|++|++++|+++.++.++|.++..+|++++|+..|+++++++|+++.+++++|.++...|++++|++.|+++++++
T Consensus 28 Ai~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~ 107 (723)
T 4gyw_A 28 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 107 (723)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
|+++.++.++|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++|.+.+++++++.|+
T Consensus 108 P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 108 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 7777777777777777777777777777777777777777777777777777777777777777766543
No 6
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.93 E-value=5.1e-24 Score=182.69 Aligned_cols=156 Identities=15% Similarity=0.155 Sum_probs=146.8
Q ss_pred hccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 039523 11 FQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNII 90 (244)
Q Consensus 11 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 90 (244)
..|+++.++.++|.++..+|++++|+..|+++++.+|++..++.++|.++...|++++|+..|+++++++|+++.+++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523 91 ACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE 166 (244)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 166 (244)
|.++..+|++++|++.|+++++++|++..++.++|.++..+|++++|+.+|+++++++|+.......+........
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999997776666665554443
No 7
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.92 E-value=3.2e-23 Score=153.87 Aligned_cols=152 Identities=18% Similarity=0.167 Sum_probs=141.1
Q ss_pred cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 039523 13 MISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIAC 92 (244)
Q Consensus 13 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 92 (244)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-----------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHH
Q 039523 93 LHMIK-----------NKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERI 161 (244)
Q Consensus 93 ~~~~~-----------~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 161 (244)
++... |++++|+..++++++++|+++.++..+|.++...|++++|+..|+++++++ +++.....+...
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 99999 999999999999999999999999999999999999999999999999999 766555555554
Q ss_pred HHHh
Q 039523 162 VLNL 165 (244)
Q Consensus 162 ~~~~ 165 (244)
....
T Consensus 161 ~~~~ 164 (217)
T 2pl2_A 161 YLSM 164 (217)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 4333
No 8
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.92 E-value=1.1e-22 Score=146.72 Aligned_cols=153 Identities=13% Similarity=0.155 Sum_probs=144.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 039523 14 ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACL 93 (244)
Q Consensus 14 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 93 (244)
+++.+|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523 94 HMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE 166 (244)
Q Consensus 94 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 166 (244)
+...++++.|...+.+++...|++..++..+|.++...|++++|+..|+++++++|+++..+..++.......
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG 155 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999999999999998776666665554443
No 9
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.91 E-value=1.3e-24 Score=152.07 Aligned_cols=143 Identities=9% Similarity=0.073 Sum_probs=122.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCh
Q 039523 21 SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKS 100 (244)
Q Consensus 21 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 100 (244)
.||.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+++|+++++++|+++.+|..+|.++...|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 46788888899999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhcCCchhhHHHHHHHHH
Q 039523 101 KEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEA-VQMVLNITNNKRIDTELLERIVL 163 (244)
Q Consensus 101 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~~ 163 (244)
++|+..|+++++++|+++.++..+|.++...|++++|... ++++++++|+++........+..
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD 145 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998876655 58999999998776665555543
No 10
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.91 E-value=2.6e-23 Score=171.50 Aligned_cols=162 Identities=17% Similarity=0.150 Sum_probs=153.0
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHc---------cCHHHHHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKA---------RDVEKALD 71 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~ 71 (244)
|+.+|+++++.+|+++.+|..+|.++...|++++|+.+|+++++.+|+ ..++..+|.++... |++++|+.
T Consensus 122 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~ 200 (474)
T 4abn_A 122 AEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVR 200 (474)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHH
Confidence 578999999999999999999999999999999999999999999998 79999999999999 99999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHc--------CChHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHH
Q 039523 72 VFTRAVQLDPENGEAWNIIACLHMIK--------NKSKEAFIAFKEALKLKR---NGWQLWENYSHVALDVGNIGQALEA 140 (244)
Q Consensus 72 ~~~~a~~~~p~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~a~~~~p---~~~~~~~~la~~~~~~~~~~~A~~~ 140 (244)
.|+++++.+|+++.+|+.+|.++... |++++|+..|+++++++| +++.++.++|.++...|++++|+.+
T Consensus 201 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 280 (474)
T 4abn_A 201 QAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEG 280 (474)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999 999999999999999999 9999999999999999999999999
Q ss_pred HHHHHhhcCCchhhHHHHHHHHH
Q 039523 141 VQMVLNITNNKRIDTELLERIVL 163 (244)
Q Consensus 141 ~~~al~~~p~~~~~~~~l~~~~~ 163 (244)
|+++++++|++...+..+..+..
T Consensus 281 ~~~al~l~p~~~~a~~~l~~~~~ 303 (474)
T 4abn_A 281 FSQAAALDPAWPEPQQREQQLLE 303 (474)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999997765555544433
No 11
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.91 E-value=2.3e-23 Score=141.34 Aligned_cols=122 Identities=16% Similarity=0.124 Sum_probs=112.8
Q ss_pred HHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHH
Q 039523 7 KLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEA 86 (244)
Q Consensus 7 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 86 (244)
++..++|+.+..+..+|..++..|+|++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++++|+++.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 039523 87 WNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVA 128 (244)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 128 (244)
|+.+|.++..+|++++|+..|+++++++|++..++..++.++
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999999888764
No 12
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.91 E-value=1.7e-23 Score=167.51 Aligned_cols=157 Identities=11% Similarity=0.102 Sum_probs=149.9
Q ss_pred HHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCcHHH
Q 039523 8 LWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARD-VEKALDVFTRAVQLDPENGEA 86 (244)
Q Consensus 8 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~p~~~~~ 86 (244)
++..+|++..++..+|.++...|++++|+..+++++.++|++..+|..+|.++...|+ +++|+.+|++++.++|++..+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 3556889999999999999999999999999999999999999999999999999997 999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHH
Q 039523 87 WNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLN 164 (244)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 164 (244)
|+++|.++..+|++++|+..|+++++++|++..+|.++|.++...|++++|+.+|+++++++|++...+..+..+...
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988777777766655
No 13
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.91 E-value=1.2e-23 Score=147.25 Aligned_cols=133 Identities=16% Similarity=0.124 Sum_probs=126.6
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|++.+++++..+|+++..++.+|.+|+..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++
T Consensus 16 ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~ 95 (150)
T 4ga2_A 16 YIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELN 95 (150)
T ss_dssp HHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC
Confidence 46788889889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIA-FKEALKLKRNGWQLWENYSHVALDVGN 133 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~-~~~a~~~~p~~~~~~~~la~~~~~~~~ 133 (244)
|+++.+++.+|.++...|++++|... ++++++++|+++.++...+.++...|+
T Consensus 96 p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 96 PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999887765 599999999999999999999988885
No 14
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.91 E-value=2.5e-22 Score=161.25 Aligned_cols=162 Identities=16% Similarity=0.130 Sum_probs=126.6
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++.+
T Consensus 188 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 267 (388)
T 1w3b_A 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45677888888888888888888888888888888888888888888778888888888888888888888888888888
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLER 160 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 160 (244)
|+++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..++++++..|+.......+..
T Consensus 268 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 347 (388)
T 1w3b_A 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 347 (388)
T ss_dssp SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888777776554444444
Q ss_pred HH
Q 039523 161 IV 162 (244)
Q Consensus 161 ~~ 162 (244)
..
T Consensus 348 ~~ 349 (388)
T 1w3b_A 348 VL 349 (388)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 15
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.90 E-value=1e-21 Score=147.36 Aligned_cols=163 Identities=15% Similarity=0.157 Sum_probs=150.4
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+.+|+++++.+|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..++++++.+
T Consensus 42 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 121 (243)
T 2q7f_A 42 AAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG 121 (243)
T ss_dssp CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLER 160 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 160 (244)
|.++.++..+|.++...|++++|+..+++++...|++..++..+|.++...|++++|+..++++++..|+.......+..
T Consensus 122 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 201 (243)
T 2q7f_A 122 MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGV 201 (243)
T ss_dssp CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987655555554
Q ss_pred HHH
Q 039523 161 IVL 163 (244)
Q Consensus 161 ~~~ 163 (244)
...
T Consensus 202 ~~~ 204 (243)
T 2q7f_A 202 TYA 204 (243)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 16
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.90 E-value=3.7e-22 Score=149.80 Aligned_cols=161 Identities=16% Similarity=0.130 Sum_probs=153.0
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++..
T Consensus 76 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 155 (243)
T 2q7f_A 76 ALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLER 160 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 160 (244)
|.++.++..+|.++...|++++|+..+++++...|++..++..+|.++...|++++|..+++++++.+|++......+..
T Consensus 156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 156 ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997766555544
Q ss_pred H
Q 039523 161 I 161 (244)
Q Consensus 161 ~ 161 (244)
+
T Consensus 236 l 236 (243)
T 2q7f_A 236 L 236 (243)
T ss_dssp -
T ss_pred H
Confidence 3
No 17
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.90 E-value=6.7e-23 Score=151.12 Aligned_cols=151 Identities=11% Similarity=0.041 Sum_probs=134.9
Q ss_pred CchHHHHHHhhccCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc
Q 039523 1 MMPAMKKLWKFQMISQLELRS----------------LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKAR 64 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 64 (244)
|+.+|+++++.+|+++.+++. +|.++...|++++|+..|+++++.+|+++.++..+|.++...|
T Consensus 23 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 102 (208)
T 3urz_A 23 AVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRG 102 (208)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Confidence 578999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 039523 65 DVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK--SKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQ 142 (244)
Q Consensus 65 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 142 (244)
++++|+.+|+++++++|+++.+++.+|.++...|+ ...+...+.+++...|. ...++..|.++...|++++|+.+|+
T Consensus 103 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~ 181 (208)
T 3urz_A 103 QEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQ 181 (208)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999999999999999999999999977764 45667777777654432 3467889999999999999999999
Q ss_pred HHHhhcCCch
Q 039523 143 MVLNITNNKR 152 (244)
Q Consensus 143 ~al~~~p~~~ 152 (244)
++++++|+..
T Consensus 182 ~al~l~P~~~ 191 (208)
T 3urz_A 182 KVILRFPSTE 191 (208)
T ss_dssp HHTTTSCCHH
T ss_pred HHHHhCCCHH
Confidence 9999999843
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=6.8e-22 Score=157.40 Aligned_cols=166 Identities=14% Similarity=0.143 Sum_probs=144.6
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+.+|+++++.+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 163 (365)
T 4eqf_A 84 TILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQN 163 (365)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC
Confidence 56788999999999999999999999999999999999999999999999999999999999988888888888777655
Q ss_pred C--------------------------------------------C--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 039523 81 P--------------------------------------------E--NGEAWNIIACLHMIKNKSKEAFIAFKEALKLK 114 (244)
Q Consensus 81 p--------------------------------------------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 114 (244)
| . ++.++..+|.++...|++++|+..++++++..
T Consensus 164 p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 243 (365)
T 4eqf_A 164 PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR 243 (365)
T ss_dssp HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4 3 77888999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523 115 RNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE 166 (244)
Q Consensus 115 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 166 (244)
|+++.+|..+|.++...|++++|+.+|++++++.|+.......+........
T Consensus 244 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 244 PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLG 295 (365)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999987666665555544443
No 19
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.90 E-value=2.5e-21 Score=146.27 Aligned_cols=163 Identities=16% Similarity=0.075 Sum_probs=151.8
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHh--
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ-- 78 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-- 78 (244)
|+.+|+++++.+|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|++++++++.
T Consensus 56 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 135 (252)
T 2ho1_A 56 AKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDT 135 (252)
T ss_dssp GHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCc
Confidence 578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHH
Q 039523 79 LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELL 158 (244)
Q Consensus 79 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 158 (244)
..|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|..+++++++..|+.......+
T Consensus 136 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 215 (252)
T 2ho1_A 136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLG 215 (252)
T ss_dssp TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999866555544
Q ss_pred HHHHH
Q 039523 159 ERIVL 163 (244)
Q Consensus 159 ~~~~~ 163 (244)
..+..
T Consensus 216 ~~~~~ 220 (252)
T 2ho1_A 216 IRLAK 220 (252)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 20
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.90 E-value=4.3e-22 Score=143.03 Aligned_cols=153 Identities=14% Similarity=0.106 Sum_probs=139.9
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|.+.+++++..+
T Consensus 27 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 106 (186)
T 3as5_A 27 AVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN 106 (186)
T ss_dssp HHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 45677777788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchh
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRI 153 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 153 (244)
|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|..+++++++..|+...
T Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998887554
No 21
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.90 E-value=2.2e-21 Score=143.63 Aligned_cols=160 Identities=11% Similarity=-0.053 Sum_probs=147.5
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHc-cCHHHHHHHHHHHHh-
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKA-RDVEKALDVFTRAVQ- 78 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~- 78 (244)
|+.+|+++++.+|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++... |++++|+..++++++
T Consensus 27 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (225)
T 2vq2_A 27 ATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD 106 (225)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC
Confidence 467899999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred -cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC-CchhhHH
Q 039523 79 -LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITN-NKRIDTE 156 (244)
Q Consensus 79 -~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~ 156 (244)
..|.+..++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|...++++++..| +......
T Consensus 107 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 186 (225)
T 2vq2_A 107 PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLL 186 (225)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 66777899999999999999999999999999999999999999999999999999999999999999999 7655444
Q ss_pred HHHH
Q 039523 157 LLER 160 (244)
Q Consensus 157 ~l~~ 160 (244)
.+..
T Consensus 187 ~~~~ 190 (225)
T 2vq2_A 187 LGWK 190 (225)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 22
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.90 E-value=7.3e-22 Score=158.54 Aligned_cols=163 Identities=18% Similarity=0.200 Sum_probs=154.4
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+.+++..+
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 233 (388)
T 1w3b_A 154 AKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLER 160 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 160 (244)
|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|++...+..+..
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997766655555
Q ss_pred HHH
Q 039523 161 IVL 163 (244)
Q Consensus 161 ~~~ 163 (244)
+..
T Consensus 314 ~~~ 316 (388)
T 1w3b_A 314 IKR 316 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 23
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.90 E-value=1.4e-21 Score=145.78 Aligned_cols=152 Identities=16% Similarity=0.108 Sum_probs=141.2
Q ss_pred ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 039523 12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNS-LYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNII 90 (244)
Q Consensus 12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 90 (244)
.+.++..++.+|.+++..|++++|+..|++++..+| .+..+++.+|.++...|++++|+..++++++.+|+++.++..+
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 356789999999999999999999999999999998 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC--chhhHHHHHHH
Q 039523 91 ACLHMIKNKSKEAFIAFKEALKLKRNGW-------QLWENYSHVALDVGNIGQALEAVQMVLNITNN--KRIDTELLERI 161 (244)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~ 161 (244)
|.++..+|++++|+..++++++.+|+++ .++..+|.++...|++++|+.+|+++++++|+ ....+..++..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 9999999999999999999999999998 66999999999999999999999999999998 66665555554
Q ss_pred HH
Q 039523 162 VL 163 (244)
Q Consensus 162 ~~ 163 (244)
..
T Consensus 163 ~~ 164 (228)
T 4i17_A 163 FY 164 (228)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 24
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=7.7e-22 Score=149.14 Aligned_cols=148 Identities=11% Similarity=0.104 Sum_probs=141.8
Q ss_pred CchHHHHHHhhccCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------------------------hCC
Q 039523 1 MMPAMKKLWKFQMIS-------QLELRSLARSAYNRGEYETSKILREAAMA--------------------------LNS 47 (244)
Q Consensus 1 Ai~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~--------------------------~~p 47 (244)
|+..|+++++.+|++ +.++..+|.++...|++++|+..+++++. .+|
T Consensus 57 A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 136 (258)
T 3uq3_A 57 AISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNP 136 (258)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCc
Confidence 567899999999887 79999999999999999999999999999 666
Q ss_pred CChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 039523 48 LYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV 127 (244)
Q Consensus 48 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 127 (244)
.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 216 (258)
T 3uq3_A 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 216 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhc
Q 039523 128 ALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 128 ~~~~~~~~~A~~~~~~al~~~ 148 (244)
+...|++++|+.++++++++.
T Consensus 217 ~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 217 QIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999999999
No 25
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.89 E-value=6e-22 Score=150.87 Aligned_cols=154 Identities=14% Similarity=0.125 Sum_probs=121.1
Q ss_pred CchHHHHHHhhccCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHH--------ccCH
Q 039523 1 MMPAMKKLWKFQMIS---QLELRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALK--------ARDV 66 (244)
Q Consensus 1 Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~--------~g~~ 66 (244)
|+..|+++++.+|++ +.+++.+|.+++..|++++|+..|+++++..|++ +.+++.+|.++.. .|++
T Consensus 34 A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~ 113 (261)
T 3qky_A 34 AIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDT 113 (261)
T ss_dssp HHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHH
T ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhH
Confidence 467778888888877 7888888888888888888888888888887754 4577788888888 8888
Q ss_pred HHHHHHHHHHHhcCCCcHHHH-----------------HHHHHHHHHcCChHHHHHHHHHHHhcCCC---CHHHHHHHHH
Q 039523 67 EKALDVFTRAVQLDPENGEAW-----------------NIIACLHMIKNKSKEAFIAFKEALKLKRN---GWQLWENYSH 126 (244)
Q Consensus 67 ~~A~~~~~~a~~~~p~~~~~~-----------------~~l~~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~la~ 126 (244)
++|+..|++++..+|+++.+. +.+|.++...|++++|+..|++++...|+ .+.+++.+|.
T Consensus 114 ~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~ 193 (261)
T 3qky_A 114 RKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMR 193 (261)
T ss_dssp HHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 888888888888888776555 77788888888888888888888888777 4567888888
Q ss_pred HHHHc----------CCHHHHHHHHHHHHhhcCCchhh
Q 039523 127 VALDV----------GNIGQALEAVQMVLNITNNKRID 154 (244)
Q Consensus 127 ~~~~~----------~~~~~A~~~~~~al~~~p~~~~~ 154 (244)
++..+ |++++|+..|+++++..|+++..
T Consensus 194 ~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 194 AYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 88766 77788888888888888876543
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=1.9e-21 Score=154.88 Aligned_cols=150 Identities=20% Similarity=0.231 Sum_probs=139.9
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---------------------------------
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNS--------------------------------- 47 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------------------------------- 47 (244)
|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|
T Consensus 118 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 197 (365)
T 4eqf_A 118 AIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVK 197 (365)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHH
Confidence 56788999999999999999999999999988888888887776544
Q ss_pred -----------C--ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 039523 48 -----------L--YPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK 114 (244)
Q Consensus 48 -----------~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 114 (244)
. ++.++..+|.++...|++++|+.+++++++.+|+++.+|..+|.++...|++++|+..|+++++.+
T Consensus 198 ~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 198 ELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp HHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3 678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 115 RNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 115 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
|+++.++..+|.++...|++++|+.+|++++++.|+
T Consensus 278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 999999999999999999999999999999999987
No 27
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.89 E-value=9e-23 Score=142.42 Aligned_cols=118 Identities=17% Similarity=0.113 Sum_probs=97.4
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 039523 35 SKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK 114 (244)
Q Consensus 35 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 114 (244)
+-..+++++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.+|.++|.++...|++++|+.+|++++.++
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 33456677777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523 115 RNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR 152 (244)
Q Consensus 115 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 152 (244)
|+++.+++++|.++..+|++++|+.+|++++++.|+.+
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 88888888888888888888888888888888887754
No 28
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.89 E-value=2e-22 Score=172.94 Aligned_cols=159 Identities=9% Similarity=-0.052 Sum_probs=150.0
Q ss_pred CchHHHHHH--------hhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHH
Q 039523 1 MMPAMKKLW--------KFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDV 72 (244)
Q Consensus 1 Ai~~~~~al--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 72 (244)
|++.|++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..
T Consensus 410 A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 489 (681)
T 2pzi_A 410 TLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKH 489 (681)
T ss_dssp HHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 567889999 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523 73 FTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR 152 (244)
Q Consensus 73 ~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 152 (244)
|+++++.+|+++.+++++|.++...|++++ +..|+++++++|++..+++++|.++...|++++|+..|+++++++|++.
T Consensus 490 ~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 568 (681)
T 2pzi_A 490 FTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFT 568 (681)
T ss_dssp HHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccH
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999965
Q ss_pred hhHHHHHH
Q 039523 153 IDTELLER 160 (244)
Q Consensus 153 ~~~~~l~~ 160 (244)
.....+..
T Consensus 569 ~a~~~~~~ 576 (681)
T 2pzi_A 569 TARLTSAV 576 (681)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444433
No 29
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.89 E-value=4.6e-21 Score=146.40 Aligned_cols=169 Identities=13% Similarity=0.048 Sum_probs=133.9
Q ss_pred CchHHHHHHhh----ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHH
Q 039523 1 MMPAMKKLWKF----QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRA 76 (244)
Q Consensus 1 Ai~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 76 (244)
|+..|+++++. +|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+.+++++
T Consensus 24 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 103 (275)
T 1xnf_A 24 ILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV 103 (275)
T ss_dssp HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 45677788776 45677888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH--------------------------------------
Q 039523 77 VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGW-------------------------------------- 118 (244)
Q Consensus 77 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~-------------------------------------- 118 (244)
++.+|.++.++..+|.++...|++++|+..++++++..|++.
T Consensus 104 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 183 (275)
T 1xnf_A 104 LELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI 183 (275)
T ss_dssp HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH
T ss_pred HhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHH
Confidence 888888888888888888888888888888888888777654
Q ss_pred --------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523 119 --------------------------------QLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE 166 (244)
Q Consensus 119 --------------------------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 166 (244)
.++..+|.++...|++++|+.+|++++..+|++...........+.+.
T Consensus 184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~l~~~~ 263 (275)
T 1xnf_A 184 VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLG 263 (275)
T ss_dssp HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 556777888888888888888888888888876555544444455555
Q ss_pred ccc
Q 039523 167 GRT 169 (244)
Q Consensus 167 ~~~ 169 (244)
++.
T Consensus 264 ~a~ 266 (275)
T 1xnf_A 264 QDQ 266 (275)
T ss_dssp HC-
T ss_pred hhH
Confidence 443
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.5e-21 Score=146.30 Aligned_cols=165 Identities=16% Similarity=0.217 Sum_probs=151.6
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------hhHHHHHHHHHHHccCHHHHHHHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLY-------PDGWFALGAAALKARDVEKALDVF 73 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~ 73 (244)
|+.+|+++++.+ .++.++..+|.++...|++++|+..+++++..+|.+ +.++..+|.++...|++++|+..+
T Consensus 24 A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 102 (258)
T 3uq3_A 24 AIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYY 102 (258)
T ss_dssp HHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 578899999999 999999999999999999999999999999998876 689999999999999999999999
Q ss_pred HHHHh--------------------------cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 039523 74 TRAVQ--------------------------LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV 127 (244)
Q Consensus 74 ~~a~~--------------------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 127 (244)
++++. .+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.+
T Consensus 103 ~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 182 (258)
T 3uq3_A 103 QKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAA 182 (258)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 99999 6777888999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523 128 ALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE 166 (244)
Q Consensus 128 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 166 (244)
+...|++++|+.+++++++..|+.......+........
T Consensus 183 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 183 LAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 221 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999997766655555544433
No 31
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=4.6e-21 Score=149.96 Aligned_cols=147 Identities=18% Similarity=0.116 Sum_probs=87.5
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 2 MPAMKKLWKFQMISQLELRSLARSAYNRG-EYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 2 i~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
+..++++++.+|+++.++..+|.++...| ++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 155 (330)
T 3hym_B 76 FYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM 155 (330)
T ss_dssp HHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Confidence 44555555556666666666666666666 56666666666666666555566666666666666666666666666655
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
|++..++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+.+++++++..
T Consensus 156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 55555555556666566666666666666655555555555555555555555555555555555554
No 32
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.88 E-value=1.2e-21 Score=132.91 Aligned_cols=121 Identities=15% Similarity=0.097 Sum_probs=112.2
Q ss_pred HHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH
Q 039523 41 AAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQL 120 (244)
Q Consensus 41 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 120 (244)
++..++|+.+.++..+|..+++.|++++|++.|+++++.+|.++.+|.++|.++..+|++++|+..|+++++++|+++.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHH
Q 039523 121 WENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERI 161 (244)
Q Consensus 121 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 161 (244)
|+.+|.++..+|++++|+..|+++++++|++......+..+
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 99999999999999999999999999999987766655543
No 33
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.88 E-value=5.4e-22 Score=138.49 Aligned_cols=115 Identities=14% Similarity=0.090 Sum_probs=111.6
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc
Q 039523 4 AMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN 83 (244)
Q Consensus 4 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 83 (244)
.++++++++|+++.+++.+|.+++..|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|++
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH
Q 039523 84 GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGW 118 (244)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 118 (244)
+.+|+++|.++..+|++++|+..|++++++.|+..
T Consensus 104 ~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 104 YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999864
No 34
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.88 E-value=2.9e-21 Score=147.48 Aligned_cols=164 Identities=13% Similarity=0.064 Sum_probs=147.7
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh----HHHHHHHHHHHccCHHHHHHHHHHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPD----GWFALGAAALKARDVEKALDVFTRA 76 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~a 76 (244)
|+..|+++++.+|+++.++..+|.++...|++++|+..+++++. .|.++. ++..+|.++...|++++|++.++++
T Consensus 22 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 100 (272)
T 3u4t_A 22 AIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAA 100 (272)
T ss_dssp HHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999 444443 4899999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHH
Q 039523 77 VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTE 156 (244)
Q Consensus 77 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 156 (244)
++.+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|......+++++|+.+++++++..|+......
T Consensus 101 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 180 (272)
T 3u4t_A 101 VDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYL 180 (272)
T ss_dssp HHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 99999999999999999999999999999999999999999999999995555567999999999999999999766555
Q ss_pred HHHHHHHHh
Q 039523 157 LLERIVLNL 165 (244)
Q Consensus 157 ~l~~~~~~~ 165 (244)
.+.......
T Consensus 181 ~~~~~~~~~ 189 (272)
T 3u4t_A 181 WRARANAAQ 189 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 555554444
No 35
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.88 E-value=3.5e-21 Score=162.25 Aligned_cols=152 Identities=11% Similarity=0.059 Sum_probs=136.6
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+++++++++.+
T Consensus 8 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 87 (568)
T 2vsy_A 8 ELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA 87 (568)
T ss_dssp -------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhcCCch
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV---GNIGQALEAVQMVLNITNNKR 152 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~ 152 (244)
|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.++... |++++|...++++++.+|+..
T Consensus 88 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (568)
T 2vsy_A 88 PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAV 162 (568)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCS
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCccc
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999843
No 36
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.88 E-value=1.8e-20 Score=149.00 Aligned_cols=165 Identities=12% Similarity=0.108 Sum_probs=143.6
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+.+|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+
T Consensus 83 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 162 (368)
T 1fch_A 83 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT 162 (368)
T ss_dssp HHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 56788999999999999999999999999999999999999999999999999999999999988888888877776655
Q ss_pred C-------------------------------------------------C--cHHHHHHHHHHHHHcCChHHHHHHHHH
Q 039523 81 P-------------------------------------------------E--NGEAWNIIACLHMIKNKSKEAFIAFKE 109 (244)
Q Consensus 81 p-------------------------------------------------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~ 109 (244)
| . ++.++..+|.++...|++++|+..+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4 4 577888999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHh
Q 039523 110 ALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNL 165 (244)
Q Consensus 110 a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 165 (244)
++...|+++.++..+|.++...|++++|+.++++++++.|+.......+.......
T Consensus 243 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 243 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999998766555555544433
No 37
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.88 E-value=1.1e-20 Score=142.65 Aligned_cols=156 Identities=12% Similarity=-0.018 Sum_probs=149.1
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMA--LNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 78 (244)
|+..|+++++.+|.++.++..+|.++...|++++|+..+++++. ..|.+..++..+|.++...|++++|+..++++++
T Consensus 90 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 90 ADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169 (252)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999999999999999 8888899999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHH
Q 039523 79 LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTE 156 (244)
Q Consensus 79 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 156 (244)
.+|.++.++..+|.++...|++++|+..+++++...|++...+..++.++...|++++|..+++++++..|+++....
T Consensus 170 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 170 LNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999765443
No 38
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1.4e-20 Score=148.70 Aligned_cols=164 Identities=13% Similarity=0.087 Sum_probs=147.5
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+
T Consensus 22 A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 101 (359)
T 3ieg_A 22 ALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 101 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C---CcHHHHHHH------------HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523 81 P---ENGEAWNII------------ACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVL 145 (244)
Q Consensus 81 p---~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 145 (244)
| +++.++..+ |.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++
T Consensus 102 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 181 (359)
T 3ieg_A 102 PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS 181 (359)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9 888888777 6889999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchhhHHHHHHHHHH
Q 039523 146 NITNNKRIDTELLERIVLN 164 (244)
Q Consensus 146 ~~~p~~~~~~~~l~~~~~~ 164 (244)
+..|+.+.....+......
T Consensus 182 ~~~~~~~~~~~~la~~~~~ 200 (359)
T 3ieg_A 182 KLKSDNTEAFYKISTLYYQ 200 (359)
T ss_dssp TTCSCCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHH
Confidence 9999876655555544433
No 39
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.6e-20 Score=146.93 Aligned_cols=163 Identities=15% Similarity=0.101 Sum_probs=153.9
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc-CHHHHHHHHHHHHhc
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKAR-DVEKALDVFTRAVQL 79 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~ 79 (244)
|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|+++.++..+|.++...| ++++|+.++++++..
T Consensus 41 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~ 120 (330)
T 3hym_B 41 CYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL 120 (330)
T ss_dssp HHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHH
Q 039523 80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLE 159 (244)
Q Consensus 80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 159 (244)
+|.++.+|..+|.++...|++++|+..+++++...|++..++..+|.++...|++++|+.+++++++..|++......+.
T Consensus 121 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 200 (330)
T 3hym_B 121 EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVG 200 (330)
T ss_dssp CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999765555554
Q ss_pred HHHH
Q 039523 160 RIVL 163 (244)
Q Consensus 160 ~~~~ 163 (244)
....
T Consensus 201 ~~~~ 204 (330)
T 3hym_B 201 VVAF 204 (330)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 40
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=2.2e-20 Score=147.47 Aligned_cols=161 Identities=14% Similarity=0.106 Sum_probs=82.6
Q ss_pred hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHH------------HHHHHHHHccCHHHHH
Q 039523 3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWF------------ALGAAALKARDVEKAL 70 (244)
Q Consensus 3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------~la~~~~~~g~~~~A~ 70 (244)
..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++. .+|.++...|++++|+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 254 (359)
T 3ieg_A 175 SDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 254 (359)
T ss_dssp HHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3444444444444444444444444444444444444444444444443322 1244444444444444
Q ss_pred HHHHHHHhcCCCcHH----HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523 71 DVFTRAVQLDPENGE----AWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLN 146 (244)
Q Consensus 71 ~~~~~a~~~~p~~~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 146 (244)
..+++++...|+++. ++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|..+|+++++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 255 SKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444444444442 2334555566666666666666666666666666666666666666666666666666666
Q ss_pred hcCCchhhHHHHHHHHH
Q 039523 147 ITNNKRIDTELLERIVL 163 (244)
Q Consensus 147 ~~p~~~~~~~~l~~~~~ 163 (244)
++|++......+.....
T Consensus 335 ~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 335 HNENDQQIREGLEKAQR 351 (359)
T ss_dssp TCTTCHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHH
Confidence 66655544444444433
No 41
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.88 E-value=2e-20 Score=148.69 Aligned_cols=151 Identities=23% Similarity=0.262 Sum_probs=141.3
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---------------------------------
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNS--------------------------------- 47 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------------------------------- 47 (244)
|+.+|+++++.+|+++.++..+|.++...|++++|+..+++++...|
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL 196 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhccc
Confidence 56789999999999999999999999999999888888887766554
Q ss_pred ----------------C--ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 039523 48 ----------------L--YPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKE 109 (244)
Q Consensus 48 ----------------~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 109 (244)
. ++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++
T Consensus 197 ~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 276 (368)
T 1fch_A 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 276 (368)
T ss_dssp HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3 5678889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523 110 ALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK 151 (244)
Q Consensus 110 a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 151 (244)
++...|+++.++..+|.++...|++++|+.+|++++++.|+.
T Consensus 277 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 277 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999986
No 42
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.87 E-value=3.7e-21 Score=158.65 Aligned_cols=164 Identities=15% Similarity=0.112 Sum_probs=150.4
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 2 MPAMKKLWKFQMISQLELRSLARSAYNRGEY-ETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
+..++++....|.++.+++.+|.++...|++ ++|+..|+++++.+|+++.+|..+|.++...|++++|+.+|+++++.+
T Consensus 88 l~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~ 167 (474)
T 4abn_A 88 LQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC 167 (474)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3456666677899999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHH
Q 039523 81 PENGEAWNIIACLHMIK---------NKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV--------GNIGQALEAVQM 143 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~--------~~~~~A~~~~~~ 143 (244)
|+ ..++..+|.++... |++++|+..|+++++++|+++.+|..+|.++... |++++|+.+|++
T Consensus 168 p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~ 246 (474)
T 4abn_A 168 KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQ 246 (474)
T ss_dssp CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence 99 79999999999999 9999999999999999999999999999999999 999999999999
Q ss_pred HHhhcC---CchhhHHHHHHHHHHhc
Q 039523 144 VLNITN---NKRIDTELLERIVLNLE 166 (244)
Q Consensus 144 al~~~p---~~~~~~~~l~~~~~~~~ 166 (244)
+++++| +.+..+..+........
T Consensus 247 al~~~p~~~~~~~~~~~lg~~~~~~g 272 (474)
T 4abn_A 247 AEKVDRKASSNPDLHLNRATLHKYEE 272 (474)
T ss_dssp HHHHCGGGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhCCCcccCHHHHHHHHHHHHHcC
Confidence 999999 76665555555544333
No 43
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=4.4e-20 Score=150.67 Aligned_cols=166 Identities=14% Similarity=0.113 Sum_probs=148.6
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHH------------HHHHHHccCHHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFAL------------GAAALKARDVEK 68 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l------------a~~~~~~g~~~~ 68 (244)
|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|++...+..+ |.++...|++++
T Consensus 196 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 275 (450)
T 2y4t_A 196 AISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 275 (450)
T ss_dssp GHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 57789999999999999999999999999999999999999999999988887666 899999999999
Q ss_pred HHHHHHHHHhcCCCcHH----HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039523 69 ALDVFTRAVQLDPENGE----AWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMV 144 (244)
Q Consensus 69 A~~~~~~a~~~~p~~~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 144 (244)
|+..|++++...|+++. .+..+|.++...|++++|+..+++++..+|+++.+|..+|.++...|++++|+..++++
T Consensus 276 A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 355 (450)
T 2y4t_A 276 ATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETA 355 (450)
T ss_dssp HHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999998854 78889999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCchhhHHHHHHHHHHhc
Q 039523 145 LNITNNKRIDTELLERIVLNLE 166 (244)
Q Consensus 145 l~~~p~~~~~~~~l~~~~~~~~ 166 (244)
++++|+++.....+..+.....
T Consensus 356 l~~~p~~~~~~~~l~~~~~~~~ 377 (450)
T 2y4t_A 356 QEHNENDQQIREGLEKAQRLLK 377 (450)
T ss_dssp HTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHhCcchHHHHHHHHHHHHHhh
Confidence 9999998777777766555444
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.86 E-value=7e-20 Score=135.51 Aligned_cols=157 Identities=13% Similarity=-0.018 Sum_probs=147.9
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNR-GEYETSKILREAAMA--LNSLYPDGWFALGAAALKARDVEKALDVFTRAV 77 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 77 (244)
|+.+|+++++.+|.++.++..+|.++... |++++|+..+++++. ..|.+..++..+|.++...|++++|+..+++++
T Consensus 61 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 61 AQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999 999999999999999 667778999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHH
Q 039523 78 QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR-NGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTE 156 (244)
Q Consensus 78 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 156 (244)
+.+|.++.++..+|.++...|++++|...+++++...| .+...+..++.++...|+.+.|..+++.+.+..|+++....
T Consensus 141 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 141 AAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999765544
Q ss_pred H
Q 039523 157 L 157 (244)
Q Consensus 157 ~ 157 (244)
.
T Consensus 221 ~ 221 (225)
T 2vq2_A 221 V 221 (225)
T ss_dssp H
T ss_pred H
Confidence 3
No 45
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.86 E-value=4.2e-20 Score=140.64 Aligned_cols=149 Identities=15% Similarity=0.071 Sum_probs=135.5
Q ss_pred HhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc--
Q 039523 9 WKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQLDPEN-- 83 (244)
Q Consensus 9 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-- 83 (244)
...+|.++..++.+|..++..|++++|+..|++++..+|++ +.+++.+|.++...|++++|+..|+++++..|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 45688999999999999999999999999999999999998 8899999999999999999999999999998854
Q ss_pred -HHHHHHHHHHHHH--------cCChHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHcCCHHHH
Q 039523 84 -GEAWNIIACLHMI--------KNKSKEAFIAFKEALKLKRNGWQLW-----------------ENYSHVALDVGNIGQA 137 (244)
Q Consensus 84 -~~~~~~l~~~~~~--------~~~~~~A~~~~~~a~~~~p~~~~~~-----------------~~la~~~~~~~~~~~A 137 (244)
+.+++.+|.++.. .|++++|+..|++++...|++..+. +.+|.++...|++++|
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 167 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA 167 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 6789999999999 9999999999999999999986665 8889999999999999
Q ss_pred HHHHHHHHhhcCCchhhHHH
Q 039523 138 LEAVQMVLNITNNKRIDTEL 157 (244)
Q Consensus 138 ~~~~~~al~~~p~~~~~~~~ 157 (244)
+..|+++++..|+.......
T Consensus 168 ~~~~~~~l~~~p~~~~~~~a 187 (261)
T 3qky_A 168 AVTYEAVFDAYPDTPWADDA 187 (261)
T ss_dssp HHHHHHHHHHCTTSTTHHHH
T ss_pred HHHHHHHHHHCCCCchHHHH
Confidence 99999999999986543333
No 46
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.86 E-value=8.2e-21 Score=149.90 Aligned_cols=147 Identities=12% Similarity=0.094 Sum_probs=139.2
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------------hhHHHHHHHHHHHccC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLY---------------PDGWFALGAAALKARD 65 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~ 65 (244)
|+..|++++..+|+++.++..+|.+++..|++++|+..|++++..+|.+ ..++.++|.++...|+
T Consensus 132 A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~ 211 (336)
T 1p5q_A 132 AKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA 211 (336)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5677888888999999999999999999999999999999999999998 5899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHH
Q 039523 66 VEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQA-LEAVQMV 144 (244)
Q Consensus 66 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A-~~~~~~a 144 (244)
+++|+.+|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...|++++| ...|++.
T Consensus 212 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 212 FSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 5577777
Q ss_pred Hhh
Q 039523 145 LNI 147 (244)
Q Consensus 145 l~~ 147 (244)
+..
T Consensus 292 ~~~ 294 (336)
T 1p5q_A 292 FER 294 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 47
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.86 E-value=4e-21 Score=133.97 Aligned_cols=114 Identities=19% Similarity=0.137 Sum_probs=60.2
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc
Q 039523 4 AMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN 83 (244)
Q Consensus 4 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 83 (244)
.|++++..+|++..+++.+|..+...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|++
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523 84 GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG 117 (244)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 117 (244)
+.+++.+|.++...|++++|+..|++++++.|++
T Consensus 89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 89 PRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 5555555555555555555555555555554444
No 48
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=5e-20 Score=143.70 Aligned_cols=162 Identities=12% Similarity=0.040 Sum_probs=143.8
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHh-hCCCChhHHHHHHHHHHHccC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYN-------RGEY-------ETSKILREAAMA-LNSLYPDGWFALGAAALKARD 65 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~-------~~~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~ 65 (244)
|+..|++++..+|+++.+|+.+|..+.. .|++ ++|+..|++++. .+|++..+|..+|.++...|+
T Consensus 35 a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~ 114 (308)
T 2ond_A 35 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK 114 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC
Confidence 3568999999999999999999999874 5885 999999999999 799999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHH
Q 039523 66 VEKALDVFTRAVQLDPENGE-AWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD-VGNIGQALEAVQM 143 (244)
Q Consensus 66 ~~~A~~~~~~a~~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~ 143 (244)
+++|...|+++++.+|.++. +|..+|.++...|++++|...|+++++..|....+|...+.+... .|++++|+.+|++
T Consensus 115 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~ 194 (308)
T 2ond_A 115 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFEL 194 (308)
T ss_dssp HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999887 999999999999999999999999999999988888877776544 7999999999999
Q ss_pred HHhhcCCchhhHHHHHHHH
Q 039523 144 VLNITNNKRIDTELLERIV 162 (244)
Q Consensus 144 al~~~p~~~~~~~~l~~~~ 162 (244)
+++..|+.+..+..+..+.
T Consensus 195 al~~~p~~~~~~~~~~~~~ 213 (308)
T 2ond_A 195 GLKKYGDIPEYVLAYIDYL 213 (308)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHH
Confidence 9999998766555544443
No 49
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.86 E-value=5.7e-21 Score=133.17 Aligned_cols=129 Identities=12% Similarity=0.053 Sum_probs=118.9
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 039523 35 SKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK 114 (244)
Q Consensus 35 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 114 (244)
+...+++++..+|++..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 039523 115 RNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVL 163 (244)
Q Consensus 115 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 163 (244)
|+++.+++++|.++...|++++|+.+|++++++.|+++.......+...
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 134 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSS 134 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHH
Confidence 9999999999999999999999999999999999987655544444433
No 50
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=7.6e-20 Score=149.27 Aligned_cols=162 Identities=12% Similarity=0.091 Sum_probs=132.9
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+.+|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|++++..+
T Consensus 45 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 124 (450)
T 2y4t_A 45 ALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 124 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 46778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCcH---HHHHHH------------HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523 81 PENG---EAWNII------------ACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVL 145 (244)
Q Consensus 81 p~~~---~~~~~l------------~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 145 (244)
|++. .++..+ |.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..|++++
T Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 204 (450)
T 2y4t_A 125 PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS 204 (450)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8877 665554 5568888888888888888888888888888888888888888888888888888
Q ss_pred hhcCCchhhHHHHHHHH
Q 039523 146 NITNNKRIDTELLERIV 162 (244)
Q Consensus 146 ~~~p~~~~~~~~l~~~~ 162 (244)
+..|++...+..+....
T Consensus 205 ~~~~~~~~~~~~l~~~~ 221 (450)
T 2y4t_A 205 KLKNDNTEAFYKISTLY 221 (450)
T ss_dssp HHHCSCHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHH
Confidence 88887665555444443
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.86 E-value=8.2e-21 Score=144.93 Aligned_cols=147 Identities=10% Similarity=0.099 Sum_probs=93.9
Q ss_pred CchHHHHHHhhccCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHH
Q 039523 1 MMPAMKKLWKFQMIS----QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRA 76 (244)
Q Consensus 1 Ai~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 76 (244)
|+..|+++++ .|.+ ..++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+++++
T Consensus 56 A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 56 AQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp HHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred HHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3556666666 2222 3346666666666777777777777777666666666666677777777777777777666
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhc
Q 039523 77 VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGN---IGQALEAVQMVLNIT 148 (244)
Q Consensus 77 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~ 148 (244)
++.+|.++.++..+|......+++++|+..++++++.+|++..++..+|.++...|+ +++|+..++++++..
T Consensus 135 l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 135 IRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp CCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 666666666666666334444566666666666666666666666666666666665 555666666665554
No 52
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.86 E-value=6.1e-20 Score=136.84 Aligned_cols=149 Identities=11% Similarity=0.070 Sum_probs=84.1
Q ss_pred chHHHHHHhhccCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh---HHHHHHHHHHH-------------
Q 039523 2 MPAMKKLWKFQMIS---QLELRSLARSAYNRGEYETSKILREAAMALNSLYPD---GWFALGAAALK------------- 62 (244)
Q Consensus 2 i~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~------------- 62 (244)
+..|+++++..|++ ..+++.+|.+++..|++++|+..|+++++.+|+++. +++.+|.++..
T Consensus 24 ~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~ 103 (225)
T 2yhc_A 24 ITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVD 103 (225)
T ss_dssp HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence 45555555555544 245556666666666666666666666666555543 45555555544
Q ss_pred -----ccCHHHHHHHHHHHHhcCCCcHHHH-----------------HHHHHHHHHcCChHHHHHHHHHHHhcCCCCH--
Q 039523 63 -----ARDVEKALDVFTRAVQLDPENGEAW-----------------NIIACLHMIKNKSKEAFIAFKEALKLKRNGW-- 118 (244)
Q Consensus 63 -----~g~~~~A~~~~~~a~~~~p~~~~~~-----------------~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~-- 118 (244)
.|++++|+..|+++++..|+++.++ ..+|.++...|++++|+..|+++++..|+++
T Consensus 104 ~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 183 (225)
T 2yhc_A 104 RSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQAT 183 (225)
T ss_dssp ----CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred hhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCcc
Confidence 3455666666666666665554332 3455555566666666666666666655553
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 119 -QLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 119 -~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
.++..+|.++..+|++++|+..++++....|+
T Consensus 184 ~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 184 RDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 44555666666666666666666555555544
No 53
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.85 E-value=8.6e-20 Score=154.10 Aligned_cols=163 Identities=16% Similarity=0.096 Sum_probs=131.3
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+.+|+++++.+|.+..+|..+|..+...|++++|+..|++++...|++..++..+|.++.+.|++++|.+.|+++++.+
T Consensus 392 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 46778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchh
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKL------KRNG-WQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRI 153 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 153 (244)
|.++.+|..+|.++...|++++|+..|+++++. +|+. ..+|..+|.++...|++++|+..++++++..|++..
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 551 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence 888888888888888888888888888888877 5554 677888888888888888888888888888887665
Q ss_pred hHHHHHHHHH
Q 039523 154 DTELLERIVL 163 (244)
Q Consensus 154 ~~~~l~~~~~ 163 (244)
.+..+.....
T Consensus 552 ~~~~l~~~~~ 561 (597)
T 2xpi_A 552 VHTAIALVYL 561 (597)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 54
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.85 E-value=6.1e-21 Score=132.09 Aligned_cols=117 Identities=17% Similarity=0.121 Sum_probs=70.4
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc
Q 039523 4 AMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN 83 (244)
Q Consensus 4 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 83 (244)
.|++++..+|++...++.+|..++..|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|++++..+|++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 34555555666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH
Q 039523 84 GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQL 120 (244)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 120 (244)
+.+++.+|.++...|++++|+..|++++.+.|+++..
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch
Confidence 6666666666666666666666666666665555443
No 55
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=1.6e-19 Score=139.66 Aligned_cols=160 Identities=12% Similarity=0.013 Sum_probs=136.9
Q ss_pred CchHHHHHHhh--ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523 1 MMPAMKKLWKF--QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78 (244)
Q Consensus 1 Ai~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 78 (244)
|++.+++++.. +|+++.+++.+|.++...|++++|+..+++ |.++.++..+|.++...|++++|.+.++++++
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 45677887765 699999999999999999999999999988 88999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHH--HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHH
Q 039523 79 LDPENGEAWNIIA--CLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTE 156 (244)
Q Consensus 79 ~~p~~~~~~~~l~--~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 156 (244)
.+|++.......+ .++...|++++|+..|++++...|+++.++.++|.++...|++++|...++++++.+|+++..+.
T Consensus 159 ~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 159 QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9998865544433 33445588999999999999999999999999999999999999999999999999999877666
Q ss_pred HHHHHHHHh
Q 039523 157 LLERIVLNL 165 (244)
Q Consensus 157 ~l~~~~~~~ 165 (244)
.+.......
T Consensus 239 ~l~~~~~~~ 247 (291)
T 3mkr_A 239 NLVVLSQHL 247 (291)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 665554443
No 56
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.85 E-value=2.9e-19 Score=121.40 Aligned_cols=134 Identities=24% Similarity=0.456 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039523 17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI 96 (244)
Q Consensus 17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 96 (244)
.+++.+|..+...|++++|+..+++++...|.+..++..+|.++...|++++|...+++++...|.++.++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 97 KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 97 ~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
.|++++|+..+++++...|++..++..+|.++...|++++|..+++++++.+|+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999999999999999999999886
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=2.3e-19 Score=139.92 Aligned_cols=147 Identities=14% Similarity=0.097 Sum_probs=139.0
Q ss_pred CchHHHHHHh-hccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523 1 MMPAMKKLWK-FQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPD-GWFALGAAALKARDVEKALDVFTRAVQ 78 (244)
Q Consensus 1 Ai~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~ 78 (244)
|+..|++|++ ++|++..+|..+|..+...|++++|+..|+++++..|.++. +|..+|.++.+.|++++|...|+++++
T Consensus 83 A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 162 (308)
T 2ond_A 83 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 162 (308)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4678999999 79999999999999999999999999999999999999987 999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 79 LDPENGEAWNIIACLHMI-KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 79 ~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
.+|.+..+|...+.+... .|++++|...|+++++..|+++.+|..++.++...|++++|+..|++++..
T Consensus 163 ~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 163 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999988877776544 799999999999999999999999999999999999999999999999996
No 58
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.85 E-value=8.5e-20 Score=142.56 Aligned_cols=163 Identities=15% Similarity=0.111 Sum_probs=132.7
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc-
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL- 79 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~- 79 (244)
|+.+|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..+++++..
T Consensus 40 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 119 (327)
T 3cv0_A 40 AALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 119 (327)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4677888888888888888888888888888888888888888888888888888888888888877777766665544
Q ss_pred ------------------------------------------------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 039523 80 ------------------------------------------------DPENGEAWNIIACLHMIKNKSKEAFIAFKEAL 111 (244)
Q Consensus 80 ------------------------------------------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 111 (244)
+|.++.++..+|.++...|++++|+..+++++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 199 (327)
T 3cv0_A 120 PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAV 199 (327)
T ss_dssp TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 45566778888888888888888888888888
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 039523 112 KLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVL 163 (244)
Q Consensus 112 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 163 (244)
...|+++.++..+|.++...|++++|+.+++++++..|+.......+.....
T Consensus 200 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 200 ELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYS 251 (327)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888886655555444443
No 59
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=1.6e-19 Score=139.71 Aligned_cols=153 Identities=10% Similarity=-0.019 Sum_probs=134.1
Q ss_pred cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHH--HHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 039523 13 MISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALG--AAALKARDVEKALDVFTRAVQLDPENGEAWNII 90 (244)
Q Consensus 13 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 90 (244)
|+++.++..+|.++..+|++++|+..++++++.+|++.......+ .++...|++++|+..|++++..+|+++.+++.+
T Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l 206 (291)
T 3mkr_A 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ 206 (291)
T ss_dssp CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 889999999999999999999999999999999998765444333 334456899999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523 91 ACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQ-ALEAVQMVLNITNNKRIDTELLERIVLNLE 166 (244)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 166 (244)
|.++...|++++|...+++++..+|+++.++.++|.++...|+..+ +..+++++++++|+++..... ......+.
T Consensus 207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~-~~~~~~fd 282 (291)
T 3mkr_A 207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY-RAKENDFD 282 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHH
Confidence 9999999999999999999999999999999999999999999976 578999999999998865543 33333343
No 60
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.84 E-value=2.8e-19 Score=150.93 Aligned_cols=148 Identities=11% Similarity=0.101 Sum_probs=140.0
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+..|+++++.+|+++.++..+|..+...|++++|+..|+++++.+|.+..+|..+|.++...|++++|++.|+++++..
T Consensus 358 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 358 LYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp HHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
|++..++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|+++++..
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999884
No 61
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=3.7e-20 Score=144.60 Aligned_cols=150 Identities=13% Similarity=0.095 Sum_probs=137.1
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+..++++++.+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++.+
T Consensus 157 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 157 CRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN------------GWQLWENYSHVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
|+++.++..+|.++...|++++|+..+++++...|+ +..++..+|.++...|++++|...+++++...
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998 78899999999999999999999998887766
Q ss_pred CC
Q 039523 149 NN 150 (244)
Q Consensus 149 p~ 150 (244)
|+
T Consensus 317 ~~ 318 (327)
T 3cv0_A 317 AK 318 (327)
T ss_dssp HH
T ss_pred ch
Confidence 54
No 62
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.84 E-value=1.8e-20 Score=134.38 Aligned_cols=150 Identities=13% Similarity=0.078 Sum_probs=101.4
Q ss_pred cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 039523 13 MISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIAC 92 (244)
Q Consensus 13 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 92 (244)
|.....++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+| ++..+...+.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 444455677777777777777777777777777777777777777777777777777777777777777 6665555554
Q ss_pred HHH-HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc--hhhHHHHHHHHH
Q 039523 93 LHM-IKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK--RIDTELLERIVL 163 (244)
Q Consensus 93 ~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~ 163 (244)
+.. ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. ......+..+..
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~ 155 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILS 155 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence 422 22333456777777777777777777777777777777777777777777777763 223444444333
No 63
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.84 E-value=4.4e-19 Score=127.14 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=139.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 039523 15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLH 94 (244)
Q Consensus 15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 94 (244)
....+..+|..+...|++++|+..+++++...|.+..++..+|.++...|++++|...++++++.+|.++.++..+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 039523 95 MIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVL 163 (244)
Q Consensus 95 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 163 (244)
...|++++|...+++++...|+++.++..+|.++...|++++|+.+++++++..|+.......+.....
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 155 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYE 155 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987655555554443
No 64
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.84 E-value=5.1e-20 Score=127.38 Aligned_cols=127 Identities=13% Similarity=0.075 Sum_probs=114.9
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 039523 37 ILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN 116 (244)
Q Consensus 37 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 116 (244)
..+++++..+|++...++.+|..+...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 039523 117 GWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVL 163 (244)
Q Consensus 117 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 163 (244)
++.+++.+|.++...|++++|+.+|++++++.|+++.......+...
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 131 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGA 131 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999987655554444433
No 65
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.6e-19 Score=149.42 Aligned_cols=154 Identities=16% Similarity=0.093 Sum_probs=88.2
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523 2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81 (244)
Q Consensus 2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 81 (244)
+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++...|
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 324 GKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp HHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CcHH------HHHHHHHHHHH---cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523 82 ENGE------AWNIIACLHMI---KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR 152 (244)
Q Consensus 82 ~~~~------~~~~l~~~~~~---~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 152 (244)
+++. ++..+|.++.. .|++++|+..+++++...|+++.++..+|.++...|++++|...|+++++++|+++
T Consensus 404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTME 483 (514)
T ss_dssp TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence 5433 55555555555 55566666666655555555555555566666666666666666666666555544
Q ss_pred hhH
Q 039523 153 IDT 155 (244)
Q Consensus 153 ~~~ 155 (244)
...
T Consensus 484 ~~~ 486 (514)
T 2gw1_A 484 EKL 486 (514)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 66
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.83 E-value=7.8e-19 Score=135.61 Aligned_cols=155 Identities=12% Similarity=0.017 Sum_probs=143.2
Q ss_pred ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 039523 12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIA 91 (244)
Q Consensus 12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 91 (244)
-|.+...+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+....+...+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 58889999999999999999999999999999999999999999999999999999999999999999998777778888
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc--hhhHHHHHHHHHHhc
Q 039523 92 CLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK--RIDTELLERIVLNLE 166 (244)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~ 166 (244)
..+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|.++++.+|+. ......+..+.....
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 889999999999999999999999999999999999999999999999999999999997 555555655555444
No 67
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.83 E-value=1.4e-19 Score=133.21 Aligned_cols=135 Identities=16% Similarity=0.147 Sum_probs=122.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHH----------------HHHHHHHccCHHHHHHHHHHHHh
Q 039523 15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFA----------------LGAAALKARDVEKALDVFTRAVQ 78 (244)
Q Consensus 15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~a~~ 78 (244)
++..++..|..++..|++++|+..|++++..+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 57788999999999999999999999999999999999999 99999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhcC
Q 039523 79 LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGN--IGQALEAVQMVLNITN 149 (244)
Q Consensus 79 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~p 149 (244)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|+ ...+...+.+++...|
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK 155 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999999999999999999999987764 4556777777765433
No 68
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.8e-19 Score=120.27 Aligned_cols=118 Identities=13% Similarity=0.117 Sum_probs=89.1
Q ss_pred cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 039523 13 MISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIAC 92 (244)
Q Consensus 13 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 92 (244)
|..+..+..+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHcCChHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHH
Q 039523 93 LHMIKNKSKEAFIAFKEALKLK------RNGWQLWENYSHVALD 130 (244)
Q Consensus 93 ~~~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~la~~~~~ 130 (244)
++...|++++|+..|+++++++ |++..++..++.+...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 7777777777777777777777 7777777666665543
No 69
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=2e-19 Score=149.90 Aligned_cols=150 Identities=17% Similarity=0.194 Sum_probs=145.4
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+..|+++++.+|+ +.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++.+
T Consensus 262 A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 262 AQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 46789999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK 151 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 151 (244)
|+++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+.+|+++++..|+.
T Consensus 341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998764
No 70
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=7.1e-19 Score=146.53 Aligned_cols=164 Identities=12% Similarity=0.142 Sum_probs=149.0
Q ss_pred CchHHHHHHhhccCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHH
Q 039523 1 MMPAMKKLWKFQMISQL-------ELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVF 73 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~-------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 73 (244)
|+.+|+++++.+|+++. ++..+|.++...|++++|+..+++++..+|+ ..++..+|.++...|++++|+..+
T Consensus 221 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~ 299 (537)
T 3fp2_A 221 STDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFF 299 (537)
T ss_dssp HHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHH
Confidence 45688888999999865 5788889999999999999999999999998 999999999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchh
Q 039523 74 TRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRI 153 (244)
Q Consensus 74 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 153 (244)
++++..+|+++.++..+|.++...|++++|+..+++++..+|++..++..+|.++...|++++|+.+++++++..|++..
T Consensus 300 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 379 (537)
T 3fp2_A 300 QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPE 379 (537)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999776
Q ss_pred hHHHHHHHHHHh
Q 039523 154 DTELLERIVLNL 165 (244)
Q Consensus 154 ~~~~l~~~~~~~ 165 (244)
....+.......
T Consensus 380 ~~~~l~~~~~~~ 391 (537)
T 3fp2_A 380 VPTFFAEILTDR 391 (537)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 665555544433
No 71
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.82 E-value=3.1e-19 Score=147.75 Aligned_cols=160 Identities=14% Similarity=0.079 Sum_probs=100.5
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..++++++.+
T Consensus 289 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 368 (514)
T 2gw1_A 289 YYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF 368 (514)
T ss_dssp GGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 34556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHhhcCCc
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQ------LWENYSHVALD---VGNIGQALEAVQMVLNITNNK 151 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~------~~~~la~~~~~---~~~~~~A~~~~~~al~~~p~~ 151 (244)
|+++.++..+|.++...|++++|+..+++++...|++.. ++..+|.++.. .|++++|+..++++++..|+.
T Consensus 369 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 448 (514)
T 2gw1_A 369 PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS 448 (514)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc
Confidence 666666666666666666666666666666666555533 66666666666 666666666666666666665
Q ss_pred hhhHHHHHH
Q 039523 152 RIDTELLER 160 (244)
Q Consensus 152 ~~~~~~l~~ 160 (244)
......+..
T Consensus 449 ~~~~~~la~ 457 (514)
T 2gw1_A 449 EQAKIGLAQ 457 (514)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444333333
No 72
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.82 E-value=4.7e-19 Score=126.91 Aligned_cols=135 Identities=21% Similarity=0.225 Sum_probs=119.6
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHHcCCh--HH
Q 039523 26 AYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACL-HMIKNKS--KE 102 (244)
Q Consensus 26 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~-~~~~~~~--~~ 102 (244)
+...|++++|+..+++++..+|+++.++..+|.++...|++++|+.+|+++++.+|+++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999 8899998 99
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 039523 103 AFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLER 160 (244)
Q Consensus 103 A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 160 (244)
|+..+++++..+|++..++..+|.++...|++++|+.+++++++.+|++......+..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 157 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVES 157 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987544444333
No 73
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.82 E-value=1.4e-19 Score=139.77 Aligned_cols=146 Identities=11% Similarity=0.056 Sum_probs=139.4
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+........+..+...++.++|+..+++++..+
T Consensus 136 A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~ 215 (287)
T 3qou_A 136 ALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN 215 (287)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC
Confidence 56889999999999999999999999999999999999999999999777777788888899999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG--WQLWENYSHVALDVGNIGQALEAVQMVLN 146 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~ 146 (244)
|+++.+++.+|.++...|++++|+..|+++++.+|++ ..++..++.++...|+.++|...|++++.
T Consensus 216 P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 216 PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 88999999999999999999999999875
No 74
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.82 E-value=1.7e-19 Score=139.62 Aligned_cols=152 Identities=14% Similarity=0.050 Sum_probs=129.2
Q ss_pred CchHHHHHHhhccC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------hhHHHHHHHHHHHc-cCHH
Q 039523 1 MMPAMKKLWKFQMI------SQLELRSLARSAYNRGEYETSKILREAAMALNSLY------PDGWFALGAAALKA-RDVE 67 (244)
Q Consensus 1 Ai~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~ 67 (244)
|+.+|++++++.+. .+.++..+|.++...|++++|+.+|++++.+.|.. ..++..+|.++... |+++
T Consensus 56 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~ 135 (292)
T 1qqe_A 56 AGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYA 135 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHH
Confidence 56788899888432 26789999999999999999999999999987654 45788999999996 9999
Q ss_pred HHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHcCCH
Q 039523 68 KALDVFTRAVQLDPEN------GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQ-------LWENYSHVALDVGNI 134 (244)
Q Consensus 68 ~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-------~~~~la~~~~~~~~~ 134 (244)
+|+.+|++++.+.|.. ..++.++|.++..+|++++|+.+|++++...|++.. ++.++|.++..+|++
T Consensus 136 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 215 (292)
T 1qqe_A 136 KAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA 215 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999987754 467889999999999999999999999999887643 678999999999999
Q ss_pred HHHHHHHHHHHhhcCCch
Q 039523 135 GQALEAVQMVLNITNNKR 152 (244)
Q Consensus 135 ~~A~~~~~~al~~~p~~~ 152 (244)
++|+.+|+++++++|+..
T Consensus 216 ~~A~~~~~~al~l~p~~~ 233 (292)
T 1qqe_A 216 VAAARTLQEGQSEDPNFA 233 (292)
T ss_dssp HHHHHHHHGGGCC-----
T ss_pred HHHHHHHHHHHhhCCCCC
Confidence 999999999999999854
No 75
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.82 E-value=2.6e-18 Score=121.26 Aligned_cols=134 Identities=19% Similarity=0.176 Sum_probs=125.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 039523 15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLH 94 (244)
Q Consensus 15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 94 (244)
.+..+..+|..++..|++++|+..+++++..+|.++.++..+|.++...|++++|+..+.+++..+|.++.+++.+|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhhc
Q 039523 95 MIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV--ALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 95 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~--~~~~~~~~~A~~~~~~al~~~ 148 (244)
...|++++|+.++++++..+|++..++..++.+ +...|++++|+..+.++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 999999999999999999999999888555554 888899999999998876653
No 76
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.82 E-value=2.2e-18 Score=128.42 Aligned_cols=145 Identities=16% Similarity=0.135 Sum_probs=129.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHH---HHH
Q 039523 15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYP---DGWFALGAAALKARDVEKALDVFTRAVQLDPENGE---AWN 88 (244)
Q Consensus 15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~---~~~ 88 (244)
++..++.+|..++..|++++|+..|++++...|.++ .+++.+|.++...|++++|+..|+++++.+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 578899999999999999999999999999999774 68999999999999999999999999999998864 789
Q ss_pred HHHHHHHH------------------cCChHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHcCC
Q 039523 89 IIACLHMI------------------KNKSKEAFIAFKEALKLKRNGWQLW-----------------ENYSHVALDVGN 133 (244)
Q Consensus 89 ~l~~~~~~------------------~~~~~~A~~~~~~a~~~~p~~~~~~-----------------~~la~~~~~~~~ 133 (244)
.+|.++.. .|++++|+..|+++++..|++..++ ..+|.++...|+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99998876 5789999999999999999986554 578899999999
Q ss_pred HHHHHHHHHHHHhhcCCchhhHHHHH
Q 039523 134 IGQALEAVQMVLNITNNKRIDTELLE 159 (244)
Q Consensus 134 ~~~A~~~~~~al~~~p~~~~~~~~l~ 159 (244)
+++|+..|+++++..|+.+.....+.
T Consensus 163 ~~~A~~~~~~~l~~~p~~~~~~~a~~ 188 (225)
T 2yhc_A 163 WVAVVNRVEGMLRDYPDTQATRDALP 188 (225)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCCCccHHHHH
Confidence 99999999999999999764433333
No 77
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.81 E-value=6e-19 Score=151.46 Aligned_cols=132 Identities=11% Similarity=-0.067 Sum_probs=125.7
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++ ++.|+++++.+
T Consensus 452 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~ 530 (681)
T 2pzi_A 452 ATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN 530 (681)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGN 133 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~ 133 (244)
|+++.+++++|.++..+|++++|+..|+++++++|++..++.++|.++...++
T Consensus 531 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 531 DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999999999987666
No 78
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.81 E-value=3.1e-19 Score=127.92 Aligned_cols=145 Identities=11% Similarity=0.015 Sum_probs=131.0
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHH-HccCHHHHHHHHHHHHhc
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAAL-KARDVEKALDVFTRAVQL 79 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~ 79 (244)
|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+| ++..+..++.+.. ..++..+|+..++++++.
T Consensus 25 A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 103 (176)
T 2r5s_A 25 ALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAA 103 (176)
T ss_dssp HHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHh
Confidence 46788999999999999999999999999999999999999999999 8877666665533 334455689999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523 80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG--WQLWENYSHVALDVGNIGQALEAVQMVLN 146 (244)
Q Consensus 80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~ 146 (244)
+|+++.+++.+|.++...|++++|+..|+++++.+|+. ..++..++.++...|+.++|+..|++++.
T Consensus 104 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 104 NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999975 66999999999999999999999999875
No 79
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.81 E-value=2e-18 Score=127.06 Aligned_cols=134 Identities=17% Similarity=0.149 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM 95 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 95 (244)
...++.+|..+...|++++|+..|++++ +| ++.++..+|.++...|++++|+..|++++..+|+++.+++.+|.++.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 4567899999999999999999999995 44 78899999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523 96 IKNKSKEAFIAFKEALKLKRNGW----------------QLWENYSHVALDVGNIGQALEAVQMVLNITNNKR 152 (244)
Q Consensus 96 ~~~~~~~A~~~~~~a~~~~p~~~----------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 152 (244)
..|++++|+..|+++++..|++. .++.++|.++...|++++|+.++++++++.|+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 99999999999999999888766 9999999999999999999999999999999854
No 80
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.81 E-value=1.5e-18 Score=117.24 Aligned_cols=125 Identities=19% Similarity=0.171 Sum_probs=119.5
Q ss_pred hhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHH
Q 039523 10 KFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNI 89 (244)
Q Consensus 10 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 89 (244)
+.+|.++..+..+|..+...|++++|+..+++++..+|+++.++..+|.++...|++++|+.++.+++..+|+++.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 44677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 039523 90 IACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNI 134 (244)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~ 134 (244)
+|.++...|++++|+..+++++...|++..++..++.++...|++
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999998875
No 81
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.80 E-value=1.2e-17 Score=129.28 Aligned_cols=167 Identities=10% Similarity=-0.014 Sum_probs=158.9
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCChhHHHHHHHHH----HHc---cCHHHHHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRG--EYETSKILREAAMALNSLYPDGWFALGAAA----LKA---RDVEKALD 71 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~---g~~~~A~~ 71 (244)
|+.+++++|.++|++..+|...+.++...| ++++++.++.+++..+|.+..+|...+.++ ... +++++++.
T Consensus 52 aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~ 131 (306)
T 3dra_A 52 ALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFD 131 (306)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred HHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 578899999999999999999999999999 999999999999999999999999999999 777 78999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCChH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHH
Q 039523 72 VFTRAVQLDPENGEAWNIIACLHMIKNKSK--EAFIAFKEALKLKRNGWQLWENYSHVALDVGN------IGQALEAVQM 143 (244)
Q Consensus 72 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~--~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~------~~~A~~~~~~ 143 (244)
++.+++..+|.+..+|...+.++...|.++ ++++++.++++.+|.+..+|...+.+....|+ ++++++++.+
T Consensus 132 ~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~ 211 (306)
T 3dra_A 132 ILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKD 211 (306)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHH
Confidence 999999999999999999999999999998 99999999999999999999999999999987 9999999999
Q ss_pred HHhhcCCchhhHHHHHHHHHHhcc
Q 039523 144 VLNITNNKRIDTELLERIVLNLEG 167 (244)
Q Consensus 144 al~~~p~~~~~~~~l~~~~~~~~~ 167 (244)
++..+|++...+..+..+....+.
T Consensus 212 aI~~~p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 212 KIVKCPQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHhCCCCccHHHHHHHHHHhcCC
Confidence 999999999888888888877664
No 82
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.80 E-value=2.2e-18 Score=116.46 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=107.3
Q ss_pred CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 039523 47 SLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSH 126 (244)
Q Consensus 47 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~ 126 (244)
|..+..+..+|..++..|++++|+..|+++++.+|+++.+|.++|.++...|++++|+..++++++++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhc------CCchhhHHHHHHHHH
Q 039523 127 VALDVGNIGQALEAVQMVLNIT------NNKRIDTELLERIVL 163 (244)
Q Consensus 127 ~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~ 163 (244)
++...|++++|+..|+++++++ |++......+.....
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999 776655555555443
No 83
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.80 E-value=1.7e-18 Score=117.56 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=113.6
Q ss_pred ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 039523 12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIA 91 (244)
Q Consensus 12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 91 (244)
.|.++.+++.+|..+...|++++|+..+++++..+|++..++..+|.++...|++++|+.+++++++.+|+++.+++.+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 039523 92 CLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGN 133 (244)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~ 133 (244)
.++...|++++|+..+++++..+|++..++..++.++...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999887764
No 84
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.80 E-value=5.7e-19 Score=144.90 Aligned_cols=145 Identities=13% Similarity=0.103 Sum_probs=130.7
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------------hhHHHHHHHHHHHccC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLY---------------PDGWFALGAAALKARD 65 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~ 65 (244)
|+..|++++...|..+..+..+|..++..|++++|+..|++++..+|.+ ..++.++|.++.+.|+
T Consensus 253 A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~ 332 (457)
T 1kt0_A 253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE 332 (457)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567788888899999999999999999999999999999999999988 6899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Q 039523 66 VEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE-AVQMV 144 (244)
Q Consensus 66 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~-~~~~a 144 (244)
+++|+.+|++++.++|+++.+++++|.++..+|++++|+..|+++++++|++..++..++.++...++++++.. .+.+.
T Consensus 333 ~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 333 YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988764 34444
Q ss_pred H
Q 039523 145 L 145 (244)
Q Consensus 145 l 145 (244)
+
T Consensus 413 f 413 (457)
T 1kt0_A 413 F 413 (457)
T ss_dssp -
T ss_pred H
Confidence 3
No 85
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.80 E-value=3.2e-18 Score=122.58 Aligned_cols=121 Identities=13% Similarity=0.143 Sum_probs=116.1
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHH-HHHccCH--HHHHHHHHHHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAA-ALKARDV--EKALDVFTRAV 77 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~~A~~~~~~a~ 77 (244)
|+..|+++++.+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.+ +...|++ ++|+..+++++
T Consensus 29 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al 108 (177)
T 2e2e_A 29 QLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKAL 108 (177)
T ss_dssp CCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999 8899999 99999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHH
Q 039523 78 QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLW 121 (244)
Q Consensus 78 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 121 (244)
..+|+++.+++.+|.++...|++++|+..+++++..+|++....
T Consensus 109 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 109 ALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999999999999999999999999999999999999875443
No 86
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.80 E-value=1.8e-18 Score=122.49 Aligned_cols=103 Identities=19% Similarity=0.208 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 039523 50 PDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVAL 129 (244)
Q Consensus 50 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 129 (244)
+..+..+|.+++..|++++|+.+|+++++.+|+++.+|+++|.++...|++++|+..|++++.++|+++.+++.+|.++.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHhhcCCch
Q 039523 130 DVGNIGQALEAVQMVLNITNNKR 152 (244)
Q Consensus 130 ~~~~~~~A~~~~~~al~~~p~~~ 152 (244)
..|++++|+.+|+++++++|++.
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~ 113 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGG 113 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSC
T ss_pred HccCHHHHHHHHHHHHHhCCCch
Confidence 55555555555555555555543
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.79 E-value=7.9e-19 Score=134.10 Aligned_cols=149 Identities=19% Similarity=0.172 Sum_probs=134.2
Q ss_pred CchHHHHHHhh--------ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--------CCChhHHHHHHHHHHHcc
Q 039523 1 MMPAMKKLWKF--------QMISQLELRSLARSAYNRGEYETSKILREAAMALN--------SLYPDGWFALGAAALKAR 64 (244)
Q Consensus 1 Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g 64 (244)
|+.+|+++++. +|..+.++..+|.++...|++++|+..+++++... |....++..+|.++...|
T Consensus 20 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 99 (283)
T 3edt_B 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 99 (283)
T ss_dssp HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc
Confidence 45677777774 36778899999999999999999999999999873 555678999999999999
Q ss_pred CHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCCHHHHHHHHHHH
Q 039523 65 DVEKALDVFTRAVQL--------DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL--------KRNGWQLWENYSHVA 128 (244)
Q Consensus 65 ~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~la~~~ 128 (244)
++++|+.++.+++.. +|....++..+|.++...|++++|+.++++++.. .|....++..+|.++
T Consensus 100 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 179 (283)
T 3edt_B 100 KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCY 179 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999988 4667889999999999999999999999999998 677788999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhcC
Q 039523 129 LDVGNIGQALEAVQMVLNITN 149 (244)
Q Consensus 129 ~~~~~~~~A~~~~~~al~~~p 149 (244)
...|++++|+.+++++++..+
T Consensus 180 ~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 180 LKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp HHHTCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHH
Confidence 999999999999999998743
No 88
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.79 E-value=2.3e-18 Score=125.71 Aligned_cols=134 Identities=14% Similarity=0.151 Sum_probs=106.9
Q ss_pred ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh----------------hHHHHHHHHHHHccCHHHHHHHHHH
Q 039523 12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYP----------------DGWFALGAAALKARDVEKALDVFTR 75 (244)
Q Consensus 12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~ 75 (244)
.+..+..+..+|..++..|++++|+..|++++...|.++ .++..+|.++...|++++|+.++++
T Consensus 34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 113 (198)
T 2fbn_A 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK 113 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 445567788888888888888888888888888888776 7888888888888888888888888
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Q 039523 76 AVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQAL-EAVQMVL 145 (244)
Q Consensus 76 a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~al 145 (244)
++..+|+++.+++.+|.++...|++++|+..|++++.++|++..++..++.++...++..++. ..+.+.+
T Consensus 114 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 114 VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888888888888888888888888888888888888888888888887777665 3344433
No 89
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.78 E-value=3.8e-17 Score=109.37 Aligned_cols=122 Identities=24% Similarity=0.426 Sum_probs=109.9
Q ss_pred hccCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHH
Q 039523 11 FQMIS-QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNI 89 (244)
Q Consensus 11 ~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 89 (244)
.+|.. ..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++..+|.++.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 82 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 35655 78899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 039523 90 IACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG 132 (244)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~ 132 (244)
+|.++...|++++|+..+++++..+|++..++..++.++...|
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999998887654
No 90
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.78 E-value=8.6e-18 Score=115.00 Aligned_cols=118 Identities=19% Similarity=0.174 Sum_probs=75.9
Q ss_pred hccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 039523 11 FQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNII 90 (244)
Q Consensus 11 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 90 (244)
.+|.++..+..+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 34556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCC-----CHHHHHHHHHHH
Q 039523 91 ACLHMIKNKSKEAFIAFKEALKLKRN-----GWQLWENYSHVA 128 (244)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~~la~~~ 128 (244)
|.++...|++++|+..|++++...|+ +..++..+..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666655 444444444443
No 91
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.78 E-value=2e-17 Score=116.96 Aligned_cols=117 Identities=21% Similarity=0.152 Sum_probs=110.6
Q ss_pred ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 039523 12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIA 91 (244)
Q Consensus 12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 91 (244)
++.++..++.+|.+++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.+|+.+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 039523 92 CLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVA 128 (244)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 128 (244)
.++...|++++|+.+|+++++++|++...+...+...
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 9999999999999999999999999988776666543
No 92
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=1.7e-17 Score=139.15 Aligned_cols=166 Identities=10% Similarity=0.058 Sum_probs=156.8
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc--CHHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGE----------YETSKILREAAMALNSLYPDGWFALGAAALKAR--DVEK 68 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~ 68 (244)
|++.++++++.+|++..+|...+.++...|+ +++++.++.+++..+|++..+|...+.++.+.| ++++
T Consensus 48 al~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~ 127 (567)
T 1dce_A 48 VLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAR 127 (567)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHH
Confidence 5788999999999999999999999999988 999999999999999999999999999999999 7799
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------------CC
Q 039523 69 ALDVFTRAVQLDPENGEAWNIIACLHMIKN-KSKEAFIAFKEALKLKRNGWQLWENYSHVALDV--------------GN 133 (244)
Q Consensus 69 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~--------------~~ 133 (244)
+++.++++++.+|.+..+|...+.+....| .++++++++.++++.+|++..+|+..+.++... +.
T Consensus 128 el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~ 207 (567)
T 1dce_A 128 ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV 207 (567)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH
T ss_pred HHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHH
Confidence 999999999999999999999999999999 899999999999999999999999999998885 56
Q ss_pred HHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523 134 IGQALEAVQMVLNITNNKRIDTELLERIVLNLE 166 (244)
Q Consensus 134 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 166 (244)
++++++++.+++.++|++...+..+..+.....
T Consensus 208 ~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 208 LLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp HHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 799999999999999999988888888876544
No 93
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.77 E-value=4.1e-18 Score=130.11 Aligned_cols=148 Identities=16% Similarity=0.131 Sum_probs=132.9
Q ss_pred CchHHHHHHhh--------ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCChhHHHHHHHHHHHcc
Q 039523 1 MMPAMKKLWKF--------QMISQLELRSLARSAYNRGEYETSKILREAAMAL--------NSLYPDGWFALGAAALKAR 64 (244)
Q Consensus 1 Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g 64 (244)
|+.+|+++++. +|....++..+|.++...|++++|+.++++++.. +|....++..+|.++...|
T Consensus 62 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 141 (283)
T 3edt_B 62 AAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG 141 (283)
T ss_dssp HHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC
Confidence 46788888877 4677889999999999999999999999999988 4666789999999999999
Q ss_pred CHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----------------------
Q 039523 65 DVEKALDVFTRAVQL--------DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL----------------------- 113 (244)
Q Consensus 65 ~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------------------- 113 (244)
++++|+.+++++++. .|....++..+|.++...|++++|+.++++++..
T Consensus 142 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (283)
T 3edt_B 142 KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEER 221 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 999999999999998 6777889999999999999999999999999976
Q ss_pred --------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523 114 --------------------------KRNGWQLWENYSHVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 114 --------------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
.|....++..+|.++...|++++|..+++++++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 222 EESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 24446788999999999999999999999999753
No 94
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.77 E-value=5.3e-18 Score=130.54 Aligned_cols=146 Identities=16% Similarity=0.109 Sum_probs=126.8
Q ss_pred cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 039523 13 MISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIAC 92 (244)
Q Consensus 13 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 92 (244)
|.++..+..+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCH-----HHH--------------------------HHHHHHHHHcCCHHHHHHHH
Q 039523 93 LHMIKNKSKEAFIAFKEALKLKRNGW-----QLW--------------------------ENYSHVALDVGNIGQALEAV 141 (244)
Q Consensus 93 ~~~~~~~~~~A~~~~~~a~~~~p~~~-----~~~--------------------------~~la~~~~~~~~~~~A~~~~ 141 (244)
++...|++++|+..|+++++++|++. .++ ..++.+ ..|++++|+..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~ 158 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEEC 158 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHH
Confidence 99999999999999999999987541 111 122222 357889999999
Q ss_pred HHHHhhcCCchhhHHHHHH
Q 039523 142 QMVLNITNNKRIDTELLER 160 (244)
Q Consensus 142 ~~al~~~p~~~~~~~~l~~ 160 (244)
+++++.+|++......+..
T Consensus 159 ~~al~~~p~~~~~~~~l~~ 177 (281)
T 2c2l_A 159 QRNHEGHEDDGHIRAQQAC 177 (281)
T ss_dssp SGGGTTTSCHHHHTHHHHH
T ss_pred HhhhccccchhhhhhHHHH
Confidence 9999999985544444433
No 95
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.77 E-value=1e-17 Score=113.47 Aligned_cols=101 Identities=16% Similarity=0.215 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH-------HHH
Q 039523 15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENG-------EAW 87 (244)
Q Consensus 15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-------~~~ 87 (244)
.+.++..+|..++..|+|++|+..|+++++++|+++.++.++|.++...|++++|++.++++++++|++. .++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3445556666666666666666666666666666666666666666666666666666666666555432 234
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 039523 88 NIIACLHMIKNKSKEAFIAFKEALKLKR 115 (244)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p 115 (244)
..+|.++..+|++++|+..|++++...|
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 4444444444444444444444444433
No 96
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.77 E-value=2.4e-20 Score=147.21 Aligned_cols=136 Identities=17% Similarity=0.067 Sum_probs=125.2
Q ss_pred hcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---------------HHHHHHHHH
Q 039523 28 NRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN---------------GEAWNIIAC 92 (244)
Q Consensus 28 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---------------~~~~~~l~~ 92 (244)
..+++++|+..+++++..+|.++.++..+|.+++..|++++|+..|++++..+|++ ..++.++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45677888889999999999999999999999999999999999999999999998 699999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 039523 93 LHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVL 163 (244)
Q Consensus 93 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 163 (244)
++...|++++|+.+|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|++......+..+..
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999997665555554443
No 97
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.77 E-value=5.3e-18 Score=117.37 Aligned_cols=129 Identities=17% Similarity=0.129 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM 95 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 95 (244)
+..+..+|..++..|+|++|+..|+++++.+|+++.. .++...|.+..+|.++|.++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~----------------------~a~~~~~~~a~a~~n~g~al~ 68 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE----------------------EAFDHAGFDAFCHAGLAEALA 68 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT----------------------SCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch----------------------hhhhhccchHHHHHHHHHHHH
Confidence 4556666777777777777777777777776664332 011111223447888888888
Q ss_pred HcCChHHHHHHHHHHHhc-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHH
Q 039523 96 IKNKSKEAFIAFKEALKL-------KRNGWQLW----ENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLN 164 (244)
Q Consensus 96 ~~~~~~~A~~~~~~a~~~-------~p~~~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 164 (244)
.+|++++|+..+++++++ +|++..+| ++.|.++..+|++++|+.+|+++++++|++......+......
T Consensus 69 ~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~ 148 (159)
T 2hr2_A 69 GLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV 148 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 888888888888888888 99888888 9999999999999999999999999988866555555555444
Q ss_pred hc
Q 039523 165 LE 166 (244)
Q Consensus 165 ~~ 166 (244)
+.
T Consensus 149 ~~ 150 (159)
T 2hr2_A 149 AI 150 (159)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 98
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=4.4e-18 Score=131.85 Aligned_cols=150 Identities=17% Similarity=0.147 Sum_probs=134.2
Q ss_pred CchHHHHHHhh--------ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--------CCChhHHHHHHHHHHHcc
Q 039523 1 MMPAMKKLWKF--------QMISQLELRSLARSAYNRGEYETSKILREAAMALN--------SLYPDGWFALGAAALKAR 64 (244)
Q Consensus 1 Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g 64 (244)
|+.+|++++.. +|....++..+|.++...|++++|+.++++++... |....++..+|.++...|
T Consensus 88 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 167 (311)
T 3nf1_A 88 AANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG 167 (311)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Confidence 46778888877 46678899999999999999999999999999874 555678999999999999
Q ss_pred CHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----------------------
Q 039523 65 DVEKALDVFTRAVQL--------DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL----------------------- 113 (244)
Q Consensus 65 ~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------------------- 113 (244)
++++|+.++++++.. .|....++..+|.++...|++++|+.++++++..
T Consensus 168 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (311)
T 3nf1_A 168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEER 247 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Confidence 999999999999998 6777789999999999999999999999999974
Q ss_pred --------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 114 --------------------------KRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 114 --------------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
.|....++..+|.++...|++++|..++++++++.|+
T Consensus 248 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 248 EECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 4556788999999999999999999999999998875
No 99
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.76 E-value=7.8e-17 Score=106.79 Aligned_cols=114 Identities=24% Similarity=0.214 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 039523 15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLH 94 (244)
Q Consensus 15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 94 (244)
.+..++.+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35678888888888999999999999999888888888888899888889999999999998888888888888888888
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 039523 95 MIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVA 128 (244)
Q Consensus 95 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 128 (244)
...|++++|...++++++.+|+++.++..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 8889999999989888888888888888877764
No 100
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.76 E-value=1e-16 Score=125.28 Aligned_cols=168 Identities=9% Similarity=0.019 Sum_probs=157.8
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHc-c-CHHHHHHHHHHHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRG-EYETSKILREAAMALNSLYPDGWFALGAAALKA-R-DVEKALDVFTRAV 77 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-~~~~A~~~~~~a~ 77 (244)
|++++++++.++|++..+|...+.++...| .+++++.++.+++..+|++..+|...+.++... + +++++++++.+++
T Consensus 73 AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L 152 (349)
T 3q7a_A 73 ALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSL 152 (349)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 578899999999999999999999999999 599999999999999999999999999999998 8 9999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCChH--------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHH
Q 039523 78 QLDPENGEAWNIIACLHMIKNKSK--------EAFIAFKEALKLKRNGWQLWENYSHVALDVGN-------IGQALEAVQ 142 (244)
Q Consensus 78 ~~~p~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~-------~~~A~~~~~ 142 (244)
..+|.+..+|...+.+....|.++ ++++++.++++.+|.+..+|...+.+....++ ++++++++.
T Consensus 153 ~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~ 232 (349)
T 3q7a_A 153 LPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYIL 232 (349)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 999999999999999999998888 99999999999999999999999999999987 789999999
Q ss_pred HHHhhcCCchhhHHHHHHHHHHhccc
Q 039523 143 MVLNITNNKRIDTELLERIVLNLEGR 168 (244)
Q Consensus 143 ~al~~~p~~~~~~~~l~~~~~~~~~~ 168 (244)
+++..+|++...+..+..+.......
T Consensus 233 ~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 233 KSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 99999999988888888777766543
No 101
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=4.1e-17 Score=134.00 Aligned_cols=151 Identities=15% Similarity=0.069 Sum_probs=93.1
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYN----RGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRA 76 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 76 (244)
|++.|+++++++|+++.++..+|..+.. .|++++|+..+++++..+|.++.++..+|.++...|++++|+..+.++
T Consensus 194 al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 273 (472)
T 4g1t_A 194 AIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKA 273 (472)
T ss_dssp THHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 3455555666666665555555544433 344556666666666666666666666666666666666666666666
Q ss_pred HhcCCCcHHHHHHHHHHHHHc-------------------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 039523 77 VQLDPENGEAWNIIACLHMIK-------------------NKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQA 137 (244)
Q Consensus 77 ~~~~p~~~~~~~~l~~~~~~~-------------------~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A 137 (244)
++.+|+++.++..+|.++... +.+++|+..+++++..+|.+..++..+|.++...|++++|
T Consensus 274 l~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 274 LEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEA 353 (472)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHH
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHH
Confidence 666666666666666655432 2245566666666666666666666777777777778888
Q ss_pred HHHHHHHHhhcCCc
Q 039523 138 LEAVQMVLNITNNK 151 (244)
Q Consensus 138 ~~~~~~al~~~p~~ 151 (244)
+.+|++++++.|+.
T Consensus 354 ~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 354 EYYFQKEFSKELTP 367 (472)
T ss_dssp HHHHHHHHHSCCCH
T ss_pred HHHHHHHHhcCCCC
Confidence 88888777777663
No 102
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.76 E-value=6.8e-18 Score=130.66 Aligned_cols=153 Identities=8% Similarity=-0.013 Sum_probs=126.4
Q ss_pred CchHHHHHHhhccCC------HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCC------hhHHHHHHHHHHHccCHH
Q 039523 1 MMPAMKKLWKFQMIS------QLELRSLARSAYNR-GEYETSKILREAAMALNSLY------PDGWFALGAAALKARDVE 67 (244)
Q Consensus 1 Ai~~~~~al~~~p~~------~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~ 67 (244)
|+.+|++++++.|.. +.++..+|.++... |++++|+.+|++++.+.|.. ..++..+|.++...|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 578899999997754 56899999999996 99999999999999998754 457889999999999999
Q ss_pred HHHHHHHHHHhcCCCcHH-------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH-----HHHHHHHHH--HcCC
Q 039523 68 KALDVFTRAVQLDPENGE-------AWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQL-----WENYSHVAL--DVGN 133 (244)
Q Consensus 68 ~A~~~~~~a~~~~p~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~-----~~~la~~~~--~~~~ 133 (244)
+|+.+|++++...|++.. ++.++|.++..+|++++|+.+|++++.++|+.... +..++..+. ..++
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999987643 67899999999999999999999999999986543 445555554 4678
Q ss_pred HHHHHHHHHHHHhhcCCchh
Q 039523 134 IGQALEAVQMVLNITNNKRI 153 (244)
Q Consensus 134 ~~~A~~~~~~al~~~p~~~~ 153 (244)
+++|+..|++++.++|....
T Consensus 256 ~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 256 LSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp HHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHhccCCccHHHHHH
Confidence 99999999999988887433
No 103
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=5.1e-17 Score=135.73 Aligned_cols=160 Identities=12% Similarity=0.019 Sum_probs=143.2
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHh-hCCCChhHHHHHHHHHHHccCH
Q 039523 2 MPAMKKLWKFQMISQLELRSLARSAYN-------RGEYE-------TSKILREAAMA-LNSLYPDGWFALGAAALKARDV 66 (244)
Q Consensus 2 i~~~~~al~~~p~~~~~~~~la~~~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~ 66 (244)
+..|++++..+|.++.+|..+|..+.. .|+++ +|+..|+++++ ..|++..+|..+|.++...|++
T Consensus 258 ~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~ 337 (530)
T 2ooe_A 258 MFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY 337 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH
Confidence 458999999999999999999999986 79987 99999999997 7999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHH
Q 039523 67 EKALDVFTRAVQLDPENG-EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV-ALDVGNIGQALEAVQMV 144 (244)
Q Consensus 67 ~~A~~~~~~a~~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~-~~~~~~~~~A~~~~~~a 144 (244)
++|...|+++++.+|.++ .+|..++.++...|++++|...|+++++..|.....+...+.+ +...|++++|..+|+++
T Consensus 338 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~a 417 (530)
T 2ooe_A 338 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELG 417 (530)
T ss_dssp HHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 999999999999999886 6999999999999999999999999999999887777776665 34689999999999999
Q ss_pred HhhcCCchhhHHHHHHH
Q 039523 145 LNITNNKRIDTELLERI 161 (244)
Q Consensus 145 l~~~p~~~~~~~~l~~~ 161 (244)
++..|+++..+..+..+
T Consensus 418 l~~~p~~~~~~~~~~~~ 434 (530)
T 2ooe_A 418 LKKYGDIPEYVLAYIDY 434 (530)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHH
Confidence 99999876655544444
No 104
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=5.5e-17 Score=133.25 Aligned_cols=162 Identities=14% Similarity=0.085 Sum_probs=141.6
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHc-----------------
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKA----------------- 63 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----------------- 63 (244)
|+.+|++++..+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.+|...
T Consensus 232 a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~ 311 (472)
T 4g1t_A 232 GEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRK 311 (472)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHH
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999988653
Q ss_pred --cCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH---HHHHHHHH-HHHcCCHHHH
Q 039523 64 --RDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQ---LWENYSHV-ALDVGNIGQA 137 (244)
Q Consensus 64 --g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~---~~~~la~~-~~~~~~~~~A 137 (244)
+.+++|+..+++++..+|.+..++..+|.++...|++++|+.+|++++...|++.. ++..+|.+ ....|++++|
T Consensus 312 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 391 (472)
T 4g1t_A 312 LLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKA 391 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence 34788999999999999999999999999999999999999999999999887643 35566654 4578999999
Q ss_pred HHHHHHHHhhcCCchhhHHHHHHHH
Q 039523 138 LEAVQMVLNITNNKRIDTELLERIV 162 (244)
Q Consensus 138 ~~~~~~al~~~p~~~~~~~~l~~~~ 162 (244)
+.+|++++++.|+.......+..+.
T Consensus 392 i~~y~kal~i~~~~~~~~~~~~~l~ 416 (472)
T 4g1t_A 392 IHHFIEGVKINQKSREKEKMKDKLQ 416 (472)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHH
Confidence 9999999999998665444444433
No 105
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.76 E-value=1.7e-17 Score=111.48 Aligned_cols=99 Identities=15% Similarity=0.144 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 039523 19 LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKN 98 (244)
Q Consensus 19 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 98 (244)
++.+|..+...|++++|+..++++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred ChHHHHHHHHHHHhcCCCC
Q 039523 99 KSKEAFIAFKEALKLKRNG 117 (244)
Q Consensus 99 ~~~~A~~~~~~a~~~~p~~ 117 (244)
++++|+..++++++.+|++
T Consensus 100 ~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHhCcCC
Confidence 5555555555555555543
No 106
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.75 E-value=8.2e-17 Score=110.06 Aligned_cols=107 Identities=14% Similarity=0.169 Sum_probs=102.2
Q ss_pred hhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q 039523 44 ALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWEN 123 (244)
Q Consensus 44 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 123 (244)
..+|.++..++.+|.++...|++++|+..|.+++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 124 YSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 124 la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
+|.++...|++++|+.+|++++++.|+
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 999999999999999999999999987
No 107
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.75 E-value=4.4e-18 Score=124.17 Aligned_cols=153 Identities=12% Similarity=0.005 Sum_probs=123.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH----------
Q 039523 15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENG---------- 84 (244)
Q Consensus 15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---------- 84 (244)
.+......+......|.++++.+.+.......+.....+..+|..++..|++++|+..|.+++...|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 82 (198)
T 2fbn_A 3 SSHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK 82 (198)
T ss_dssp -------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHH
T ss_pred CcccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 3344455566777788888888888877777777788999999999999999999999999999999887
Q ss_pred ------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHH
Q 039523 85 ------EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELL 158 (244)
Q Consensus 85 ------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 158 (244)
.++.++|.++...|++++|+.++++++..+|++..+++.+|.++...|++++|+.+|+++++++|++......+
T Consensus 83 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 162 (198)
T 2fbn_A 83 KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSY 162 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999988777777
Q ss_pred HHHHHHhcc
Q 039523 159 ERIVLNLEG 167 (244)
Q Consensus 159 ~~~~~~~~~ 167 (244)
..+...+.+
T Consensus 163 ~~~~~~~~~ 171 (198)
T 2fbn_A 163 ELCVNKLKE 171 (198)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766665553
No 108
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.75 E-value=1.4e-17 Score=117.53 Aligned_cols=104 Identities=15% Similarity=0.071 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------------------CCCChhHHHHHHHHHHHccCHHHHHHHHHHH
Q 039523 15 SQLELRSLARSAYNRGEYETSKILREAAMAL------------------NSLYPDGWFALGAAALKARDVEKALDVFTRA 76 (244)
Q Consensus 15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 76 (244)
.+..+..+|..++..|++++|+..|.+++.. +|.+..++.++|.++...|++++|+..+.++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3567888888888888888888888888887 3333344444444444444444444444444
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH
Q 039523 77 VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGW 118 (244)
Q Consensus 77 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 118 (244)
+.++|+++.+++.+|.++..+|++++|+..|++++.++|++.
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 444444444444444444444444444444444444444444
No 109
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.75 E-value=1.3e-17 Score=133.75 Aligned_cols=150 Identities=15% Similarity=0.079 Sum_probs=132.2
Q ss_pred CchHHHHHHhh------ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------hhHHHHHHHHHHHccCHH
Q 039523 1 MMPAMKKLWKF------QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLY-------PDGWFALGAAALKARDVE 67 (244)
Q Consensus 1 Ai~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~ 67 (244)
|+.+|++++++ .+..+.++..+|.++...|++++|+.++.+++...+.. ..++..+|.++...|+++
T Consensus 122 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 201 (383)
T 3ulq_A 122 AIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYE 201 (383)
T ss_dssp HHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHH
Confidence 56788999887 33467899999999999999999999999999985543 347899999999999999
Q ss_pred HHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cC-CCCHHHHHHHHHHHHHcCCHH
Q 039523 68 KALDVFTRAVQLDPEN------GEAWNIIACLHMIKNKSKEAFIAFKEALK-----LK-RNGWQLWENYSHVALDVGNIG 135 (244)
Q Consensus 68 ~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-----~~-p~~~~~~~~la~~~~~~~~~~ 135 (244)
+|++++++++...+.. ..++.++|.++..+|++++|+.++++++. .+ |....++.++|.++...|+++
T Consensus 202 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 281 (383)
T 3ulq_A 202 DAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKID 281 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHH
Confidence 9999999999875533 25899999999999999999999999999 46 777899999999999999999
Q ss_pred HHHHHHHHHHhhcCC
Q 039523 136 QALEAVQMVLNITNN 150 (244)
Q Consensus 136 ~A~~~~~~al~~~p~ 150 (244)
+|..++++++++.+.
T Consensus 282 ~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 282 KAHEYHSKGMAYSQK 296 (383)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998654
No 110
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.75 E-value=4.2e-18 Score=129.87 Aligned_cols=133 Identities=16% Similarity=0.044 Sum_probs=123.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhC----CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039523 21 SLARSAYNRGEYETSKILREAAMALN----SLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI 96 (244)
Q Consensus 21 ~la~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 96 (244)
.++......|++++|+..++++++.. |.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++..
T Consensus 10 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 10 VLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ 89 (275)
T ss_dssp GSCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred ceeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 33444456789999999999999984 45678999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchh
Q 039523 97 KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRI 153 (244)
Q Consensus 97 ~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 153 (244)
.|++++|+.++++++..+|++..++..+|.++...|++++|+.+++++++..|+...
T Consensus 90 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 146 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF 146 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChH
Confidence 999999999999999999999999999999999999999999999999999999653
No 111
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.75 E-value=2e-16 Score=123.11 Aligned_cols=163 Identities=10% Similarity=0.052 Sum_probs=149.9
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccC--HHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGE----------YETSKILREAAMALNSLYPDGWFALGAAALKARD--VEK 68 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~ 68 (244)
|+.++.+++..+|++..+|...+.+....+. +++++.++..++..+|.+..+|...+.++...|+ +++
T Consensus 49 aL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~ 128 (331)
T 3dss_A 49 VLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAR 128 (331)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHH
T ss_pred HHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHH
Confidence 5788999999999999999999999988776 7899999999999999999999999999999994 999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------------CC
Q 039523 69 ALDVFTRAVQLDPENGEAWNIIACLHMIKNK-SKEAFIAFKEALKLKRNGWQLWENYSHVALDV--------------GN 133 (244)
Q Consensus 69 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~--------------~~ 133 (244)
++.++.+++..+|.+..+|...+.+....|. ++++++++.+++..+|.+..+|...+.+.... +.
T Consensus 129 EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~ 208 (331)
T 3dss_A 129 ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV 208 (331)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHH
Confidence 9999999999999999999999999999999 59999999999999999999999999998887 46
Q ss_pred HHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 039523 134 IGQALEAVQMVLNITNNKRIDTELLERIVL 163 (244)
Q Consensus 134 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 163 (244)
++++++++.+++..+|++...+..+..+..
T Consensus 209 ~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 209 LLKELELVQNAFFTDPNDQSAWFYHRWLLG 238 (331)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 889999999999999998877765554444
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.75 E-value=4.9e-17 Score=136.95 Aligned_cols=137 Identities=17% Similarity=0.106 Sum_probs=110.4
Q ss_pred cCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 039523 29 RGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFK 108 (244)
Q Consensus 29 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 108 (244)
.|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++.+|+++.++..+|.++...|++++|+..++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHh
Q 039523 109 EALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNL 165 (244)
Q Consensus 109 ~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 165 (244)
++++.+|++..++.++|.++...|++++|+.+++++++.+|++......+.......
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL 138 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999766555555554444
No 113
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.75 E-value=3e-17 Score=111.20 Aligned_cols=102 Identities=22% Similarity=0.199 Sum_probs=95.7
Q ss_pred ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------HHHH
Q 039523 49 YPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG-------WQLW 121 (244)
Q Consensus 49 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~ 121 (244)
.+.++..+|..+++.|++++|+.+|+++++++|+++.+|.++|.++..+|++++|+..++++++++|++ ..++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 355788999999999999999999999999999999999999999999999999999999999998865 3578
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 122 ENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 122 ~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
.++|.++..+|++++|+.+|++++...|+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 99999999999999999999999999886
No 114
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=9.5e-17 Score=110.96 Aligned_cols=118 Identities=16% Similarity=0.114 Sum_probs=93.0
Q ss_pred ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHH
Q 039523 12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWN 88 (244)
Q Consensus 12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 88 (244)
+|.+...++.+|..++..|++++|+..|++++..+|++ ..++..+|.++...|++++|+..+++++..+|+++.+++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 56677788888888888888888888888888888876 677778888888888888888888888888887778888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 039523 89 IIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVAL 129 (244)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 129 (244)
.+|.++...|++++|+.++++++..+|++..++..++.+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 88888888888888888888888888877777777766543
No 115
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=1.2e-16 Score=133.55 Aligned_cols=152 Identities=13% Similarity=0.068 Sum_probs=140.4
Q ss_pred CchHHHHHHh-hccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523 1 MMPAMKKLWK-FQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYP-DGWFALGAAALKARDVEKALDVFTRAVQ 78 (244)
Q Consensus 1 Ai~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~ 78 (244)
|+..|++|++ ..|++..+|..+|..+...|++++|+..|+++++..|.++ .+|..+|.++.+.|++++|...|+++++
T Consensus 305 A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 305 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4678999997 7999999999999999999999999999999999999886 6999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHH-HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523 79 LDPENGEAWNIIACL-HMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR 152 (244)
Q Consensus 79 ~~p~~~~~~~~l~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 152 (244)
..|.....+...+.+ +...|++++|...|+++++..|+++.+|..++.++...|+.++|...|++++...|.++
T Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 385 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 999888888777665 34689999999999999999999999999999999999999999999999999876644
No 116
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.75 E-value=2e-17 Score=114.48 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=61.0
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc-
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL- 79 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~- 79 (244)
|+..|+++++++|+++.. +++...|.+..+|.++|.++...|++++|+.++++++.+
T Consensus 30 Ai~~Y~kAL~l~p~~~~~----------------------~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 30 AAANCRRAMEISHTMPPE----------------------EAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHTTSCTT----------------------SCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCcch----------------------hhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 578899999999884321 001111112235555555555555555555555555555
Q ss_pred ------CCCcHHHH----HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH
Q 039523 80 ------DPENGEAW----NIIACLHMIKNKSKEAFIAFKEALKLKRNGWQL 120 (244)
Q Consensus 80 ------~p~~~~~~----~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 120 (244)
+|+++.+| +++|.++..+|++++|+..|+++++++|++..+
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 77777777 777777777777777777777777777765433
No 117
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.74 E-value=1.2e-15 Score=116.55 Aligned_cols=140 Identities=16% Similarity=0.173 Sum_probs=114.4
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH----ccCHHHHHHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYN----RGEYETSKILREAAMALNSLYPDGWFALGAAALK----ARDVEKALDV 72 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~ 72 (244)
|+.+|+++++ |+++.+++.+|.++.. .+++++|+.+|+++++.+ ++.+++.+|.++.. .+++++|+.+
T Consensus 25 A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~ 100 (273)
T 1ouv_A 25 AKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQY 100 (273)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHH
Confidence 4567777776 6778888888888888 888888888888888775 77888888888888 8888888888
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 039523 73 FTRAVQLDPENGEAWNIIACLHMI----KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD----VGNIGQALEAVQMV 144 (244)
Q Consensus 73 ~~~a~~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a 144 (244)
|++++..+ ++.+++.+|.++.. .+++++|+.+|+++++.. ++.++..+|.++.. .+++++|+.+|+++
T Consensus 101 ~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a 176 (273)
T 1ouv_A 101 YSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKA 176 (273)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 88888763 77888888888888 888888888888888865 57778888888887 88888888888888
Q ss_pred Hhhc
Q 039523 145 LNIT 148 (244)
Q Consensus 145 l~~~ 148 (244)
++..
T Consensus 177 ~~~~ 180 (273)
T 1ouv_A 177 CDLK 180 (273)
T ss_dssp HHTT
T ss_pred HHCC
Confidence 8764
No 118
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.74 E-value=3.5e-17 Score=109.88 Aligned_cols=101 Identities=21% Similarity=0.223 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 039523 51 DGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD 130 (244)
Q Consensus 51 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 130 (244)
..++.+|..+...|++++|+..++++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhcCCc
Q 039523 131 VGNIGQALEAVQMVLNITNNK 151 (244)
Q Consensus 131 ~~~~~~A~~~~~~al~~~p~~ 151 (244)
.|++++|+..++++++.+|+.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCcCC
Confidence 999999999999999999974
No 119
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.74 E-value=2.4e-16 Score=116.29 Aligned_cols=154 Identities=11% Similarity=0.016 Sum_probs=135.5
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc----CHHHHHHHHHHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKAR----DVEKALDVFTRA 76 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~a 76 (244)
|+.+|+++.+. .++.+++.+|.++...+++++|+.+|+++.+. .++.+++.+|.++.. + ++++|+.+|+++
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 67889999875 78999999999999999999999999999875 588999999999998 7 999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Q 039523 77 VQLDPENGEAWNIIACLHMI----KNKSKEAFIAFKEALKLKR--NGWQLWENYSHVALD----VGNIGQALEAVQMVLN 146 (244)
Q Consensus 77 ~~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p--~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~ 146 (244)
.. +.++.+++++|.++.. .+++++|+.+|+++.+..| +++.+++++|.+|.. .+++++|+.+|+++.+
T Consensus 80 ~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 80 VE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 65 5789999999999988 8999999999999999988 358999999999999 8899999999999998
Q ss_pred hcCCchhhHHHHHHHH
Q 039523 147 ITNNKRIDTELLERIV 162 (244)
Q Consensus 147 ~~p~~~~~~~~l~~~~ 162 (244)
. |+++.....+..+.
T Consensus 158 ~-~~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 158 L-SRTGYAEYWAGMMF 172 (212)
T ss_dssp T-SCTTHHHHHHHHHH
T ss_pred c-CCCHHHHHHHHHHH
Confidence 8 44444444444443
No 120
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=3.1e-17 Score=127.03 Aligned_cols=150 Identities=19% Similarity=0.171 Sum_probs=134.6
Q ss_pred CchHHHHHHhh--------ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCChhHHHHHHHHHHHcc
Q 039523 1 MMPAMKKLWKF--------QMISQLELRSLARSAYNRGEYETSKILREAAMAL--------NSLYPDGWFALGAAALKAR 64 (244)
Q Consensus 1 Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g 64 (244)
|+.+|+++++. +|....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|
T Consensus 46 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (311)
T 3nf1_A 46 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 125 (311)
T ss_dssp HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC
Confidence 46788888884 6777899999999999999999999999999987 3555678999999999999
Q ss_pred CHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCCHHHHHHHHHHH
Q 039523 65 DVEKALDVFTRAVQLD--------PENGEAWNIIACLHMIKNKSKEAFIAFKEALKL--------KRNGWQLWENYSHVA 128 (244)
Q Consensus 65 ~~~~A~~~~~~a~~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~la~~~ 128 (244)
++++|+.+++++++.. |....++..+|.++...|++++|+.++++++.. .|....++..+|.++
T Consensus 126 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 205 (311)
T 3nf1_A 126 KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCY 205 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999874 556778999999999999999999999999998 677788899999999
Q ss_pred HHcCCHHHHHHHHHHHHhhcCC
Q 039523 129 LDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 129 ~~~~~~~~A~~~~~~al~~~p~ 150 (244)
...|++++|+.+++++++..|+
T Consensus 206 ~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 206 LKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986543
No 121
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.73 E-value=1.5e-18 Score=136.99 Aligned_cols=145 Identities=10% Similarity=0.010 Sum_probs=97.3
Q ss_pred HHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh-----------------hHHHHHHHHHHHccCHHHHH
Q 039523 8 LWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYP-----------------DGWFALGAAALKARDVEKAL 70 (244)
Q Consensus 8 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~ 70 (244)
.++..+..+..+..+|..++..|++++|+..|++++...|++. .++.++|.++...|++++|+
T Consensus 171 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~ 250 (338)
T 2if4_A 171 TVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAI 250 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3444566788899999999999999999999999999999876 38999999999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhcC
Q 039523 71 DVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV-ALDVGNIGQALEAVQMVLNITN 149 (244)
Q Consensus 71 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~-~~~~~~~~~A~~~~~~al~~~p 149 (244)
..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|++..++..++.+ ....+..+.+...|.+++...|
T Consensus 251 ~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 251 GHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKD 330 (338)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999999999999999999999999999999999999999988 4455677888899999999888
Q ss_pred Cch
Q 039523 150 NKR 152 (244)
Q Consensus 150 ~~~ 152 (244)
+++
T Consensus 331 ~~~ 333 (338)
T 2if4_A 331 EGG 333 (338)
T ss_dssp ---
T ss_pred CCC
Confidence 754
No 122
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.73 E-value=2.2e-16 Score=106.94 Aligned_cols=117 Identities=23% Similarity=0.432 Sum_probs=112.3
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|...+++++...
T Consensus 20 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 20 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 99 (136)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523 81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG 117 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 117 (244)
|.++.++..+|.++...|++++|...+++++..+|++
T Consensus 100 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 100 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999999998863
No 123
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.73 E-value=2.1e-15 Score=115.25 Aligned_cols=141 Identities=21% Similarity=0.255 Sum_probs=130.1
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH----ccCHHHHHHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYN----RGEYETSKILREAAMALNSLYPDGWFALGAAALK----ARDVEKALDV 72 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~ 72 (244)
|+.+|+++++.+ ++.++..+|.++.. .+++++|+.+|++++..+ ++.++..+|.++.. .+++++|+.+
T Consensus 61 A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~ 136 (273)
T 1ouv_A 61 AASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEY 136 (273)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 467888988874 89999999999999 999999999999999874 88999999999999 9999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 039523 73 FTRAVQLDPENGEAWNIIACLHMI----KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD----VGNIGQALEAVQMV 144 (244)
Q Consensus 73 ~~~a~~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a 144 (244)
|+++++.+ ++.++..+|.++.. .+++++|+.+|+++++.. ++.++..+|.++.. .+++++|+.+++++
T Consensus 137 ~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 212 (273)
T 1ouv_A 137 FTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKA 212 (273)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred HHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 99999976 68889999999999 999999999999999874 67899999999999 99999999999999
Q ss_pred HhhcC
Q 039523 145 LNITN 149 (244)
Q Consensus 145 l~~~p 149 (244)
++..|
T Consensus 213 ~~~~~ 217 (273)
T 1ouv_A 213 CELEN 217 (273)
T ss_dssp HHTTC
T ss_pred HhCCC
Confidence 99865
No 124
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.73 E-value=1.4e-16 Score=112.36 Aligned_cols=117 Identities=13% Similarity=0.104 Sum_probs=106.2
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHhc------------------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 039523 50 PDGWFALGAAALKARDVEKALDVFTRAVQL------------------DPENGEAWNIIACLHMIKNKSKEAFIAFKEAL 111 (244)
Q Consensus 50 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 111 (244)
...+...|..++..|++++|+..|.+++.. +|.+..++.++|.++..+|++++|+..+.+++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 467889999999999999999999999999 77777899999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch-hhHHHHHHHHHHhc
Q 039523 112 KLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR-IDTELLERIVLNLE 166 (244)
Q Consensus 112 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~ 166 (244)
.++|+++.+++.+|.++..+|++++|+..|+++++++|++. .....+..+...+.
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA 146 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999977 44555555555444
No 125
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.73 E-value=7.4e-16 Score=119.92 Aligned_cols=164 Identities=10% Similarity=0.017 Sum_probs=145.6
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccC-HHHHHHHHHHHHh
Q 039523 2 MPAMKKLWKFQMISQLELRSLARSAYNRG--EYETSKILREAAMALNSLYPDGWFALGAAALKARD-VEKALDVFTRAVQ 78 (244)
Q Consensus 2 i~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~ 78 (244)
+.++++++..+|.+..+|...+.++...+ .+++++.++.++++.+|.|..+|...+.+....|. ++++++++.+++.
T Consensus 94 L~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~ 173 (331)
T 3dss_A 94 LGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 173 (331)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 56788999999999999999999999998 49999999999999999999999999999999999 6999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----------CC
Q 039523 79 LDPENGEAWNIIACLHMIK--------------NKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV-----------GN 133 (244)
Q Consensus 79 ~~p~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~-----------~~ 133 (244)
.+|.+..+|..++.++... +.++++++++.+++..+|++..+|+.+..++... +.
T Consensus 174 ~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~ 253 (331)
T 3dss_A 174 RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTV 253 (331)
T ss_dssp HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHH
Confidence 9999999999999999887 5689999999999999999999998776666555 45
Q ss_pred HHHHHHHHHHHHhhcCCchhhHHHHHHHHHHh
Q 039523 134 IGQALEAVQMVLNITNNKRIDTELLERIVLNL 165 (244)
Q Consensus 134 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 165 (244)
++++++.+.++++..|++.+....+..+...+
T Consensus 254 l~~el~~~~elle~~pd~~w~l~~~~~~~~~~ 285 (331)
T 3dss_A 254 LQSELESCKELQELEPENKWCLLTIILLMRAL 285 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccchHHHHHHHHHHhh
Confidence 78999999999999999866554444444333
No 126
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.73 E-value=9.8e-19 Score=144.15 Aligned_cols=137 Identities=19% Similarity=0.187 Sum_probs=124.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 039523 14 ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACL 93 (244)
Q Consensus 14 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 93 (244)
..+..+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|++.++++++.+|+++.+++++|.+
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 83 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34556778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhhcCC
Q 039523 94 HMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV--ALDVGNIGQALEAVQ-----------MVLNITNN 150 (244)
Q Consensus 94 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~--~~~~~~~~~A~~~~~-----------~al~~~p~ 150 (244)
+..+|++++|+..|+++++.+|++..++..++.+ +...|++++|+..++ +++.+.|+
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 9999999999999999999999999999999988 888999999999999 77777766
No 127
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.73 E-value=3.2e-16 Score=105.97 Aligned_cols=113 Identities=14% Similarity=0.084 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHHHHHHH
Q 039523 18 ELRSLARSAYNRGEYETSKILREAAMALNSLYP---DGWFALGAAALKARDVEKALDVFTRAVQLDPEN---GEAWNIIA 91 (244)
Q Consensus 18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~ 91 (244)
.++.+|..++..|++++|+..+++++..+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 355666677777777777777777777666666 566667777777777777777777777666666 66666666
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 039523 92 CLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD 130 (244)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 130 (244)
.++...|++++|+..|++++...|++..+......+...
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 666666777777766666666666666555544444433
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.72 E-value=3.4e-16 Score=106.07 Aligned_cols=117 Identities=13% Similarity=0.130 Sum_probs=108.6
Q ss_pred CCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 039523 46 NSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYS 125 (244)
Q Consensus 46 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la 125 (244)
.|.+..+++.+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|++..++..+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 039523 126 HVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIV 162 (244)
Q Consensus 126 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 162 (244)
.++...|++++|+.+++++++.+|+.......+..+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 128 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 128 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 9999999999999999999999998766655555544
No 129
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.72 E-value=9e-17 Score=105.56 Aligned_cols=105 Identities=23% Similarity=0.210 Sum_probs=54.5
Q ss_pred ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--cHHHHHH
Q 039523 12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPE--NGEAWNI 89 (244)
Q Consensus 12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~~ 89 (244)
+|+++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+.+++++++.+|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555 5555555
Q ss_pred HHHHHHHc-CChHHHHHHHHHHHhcCCC
Q 039523 90 IACLHMIK-NKSKEAFIAFKEALKLKRN 116 (244)
Q Consensus 90 l~~~~~~~-~~~~~A~~~~~~a~~~~p~ 116 (244)
+|.++... |++++|+.++++++...|+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 55555555 5555555555555554443
No 130
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.72 E-value=7.5e-16 Score=101.97 Aligned_cols=113 Identities=17% Similarity=0.151 Sum_probs=105.7
Q ss_pred ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 039523 49 YPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVA 128 (244)
Q Consensus 49 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 128 (244)
.+..++.+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHH
Q 039523 129 LDVGNIGQALEAVQMVLNITNNKRIDTELLERI 161 (244)
Q Consensus 129 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 161 (244)
...|++++|..+++++++.+|++......+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 999999999999999999999977666555544
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.72 E-value=7.2e-16 Score=119.23 Aligned_cols=147 Identities=10% Similarity=-0.017 Sum_probs=115.0
Q ss_pred chHHHHHHhhccCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------hhHHHHHHHHHHHccCHHHH
Q 039523 2 MPAMKKLWKFQMISQ------LELRSLARSAYNRGEYETSKILREAAMALNSLY------PDGWFALGAAALKARDVEKA 69 (244)
Q Consensus 2 i~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A 69 (244)
++.++++++..|... ..++.+|..+...|++++|+..+++++...+.. ..++..+|.++...|++++|
T Consensus 95 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A 174 (293)
T 2qfc_A 95 YNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKG 174 (293)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 456677777655543 345678888888889999999999998765433 45788889999999999999
Q ss_pred HHHHHHHH---hcCCCcH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHH
Q 039523 70 LDVFTRAV---QLDPENG----EAWNIIACLHMIKNKSKEAFIAFKEALKLKRN------GWQLWENYSHVALDVGNIGQ 136 (244)
Q Consensus 70 ~~~~~~a~---~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~~~~~~~~ 136 (244)
+.+|++++ +..|++. .+++++|.++..+|++++|+.++++++.+.++ ...++.++|.++...|++++
T Consensus 175 ~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 254 (293)
T 2qfc_A 175 IDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEA 254 (293)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHH
Confidence 99999888 4455533 57888999999999999999999988877542 26788889999999999999
Q ss_pred H-HHHHHHHHhhc
Q 039523 137 A-LEAVQMVLNIT 148 (244)
Q Consensus 137 A-~~~~~~al~~~ 148 (244)
| ..++++++.+.
T Consensus 255 Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 255 EIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8 77788888764
No 132
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.72 E-value=1.1e-16 Score=124.73 Aligned_cols=150 Identities=11% Similarity=-0.004 Sum_probs=129.2
Q ss_pred CchHHHHHHhhccCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------hhHHHHHHHHHHHccCHHH
Q 039523 1 MMPAMKKLWKFQMIS------QLELRSLARSAYNRGEYETSKILREAAMALNSLY------PDGWFALGAAALKARDVEK 68 (244)
Q Consensus 1 Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~ 68 (244)
|+.+|++++++.+.. ..++..+|.++...|++++|+.+|++++.+.+.. ..++..+|.++.. |++++
T Consensus 55 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~ 133 (307)
T 2ifu_A 55 AKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSK 133 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHH
Confidence 467788888885532 5688999999999999999999999999885432 4578899999999 99999
Q ss_pred HHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHH
Q 039523 69 ALDVFTRAVQLDPEN------GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG------WQLWENYSHVALDVGNIGQ 136 (244)
Q Consensus 69 A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~~~~~~ 136 (244)
|+.+|++++.+.|.. ..++.++|.++..+|++++|+.+|++++.+.|.+ ...+..+|.++...|++++
T Consensus 134 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 213 (307)
T 2ifu_A 134 AVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA 213 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999987643 5688999999999999999999999999986643 3478889999999999999
Q ss_pred HHHHHHHHHhhcCCch
Q 039523 137 ALEAVQMVLNITNNKR 152 (244)
Q Consensus 137 A~~~~~~al~~~p~~~ 152 (244)
|+.+|++++ ++|+..
T Consensus 214 A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 214 AQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHHT-TSTTST
T ss_pred HHHHHHHHh-CCCCCC
Confidence 999999999 998743
No 133
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.71 E-value=2.5e-16 Score=121.79 Aligned_cols=148 Identities=9% Similarity=-0.013 Sum_probs=119.6
Q ss_pred CchHHHHHHhhccCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh------hHHHHHHHHHHHccCHHH
Q 039523 1 MMPAMKKLWKFQMISQL------ELRSLARSAYNRGEYETSKILREAAMALNSLYP------DGWFALGAAALKARDVEK 68 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~ 68 (244)
|+..++++++..+..+. .+..+|..+...|++++|+.++++++...+... .++..+|.++...|++++
T Consensus 94 a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 173 (293)
T 3u3w_A 94 IYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKK 173 (293)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHH
Confidence 35677777776665544 334588888888999999999999998654332 368899999999999999
Q ss_pred HHHHHHHHHhc-------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcC-CH
Q 039523 69 ALDVFTRAVQL-------DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG------WQLWENYSHVALDVG-NI 134 (244)
Q Consensus 69 A~~~~~~a~~~-------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~~-~~ 134 (244)
|+.+|+++++. .+....+++++|.++..+|++++|+.++++++.+.+.. ..++.++|.++..+| ++
T Consensus 174 A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 253 (293)
T 3u3w_A 174 GIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEE 253 (293)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcH
Confidence 99999999842 22334588999999999999999999999999875433 788999999999999 46
Q ss_pred HHHHHHHHHHHhhc
Q 039523 135 GQALEAVQMVLNIT 148 (244)
Q Consensus 135 ~~A~~~~~~al~~~ 148 (244)
++|+.++++++.+.
T Consensus 254 ~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 254 AEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 134
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.71 E-value=1.3e-16 Score=104.74 Aligned_cols=107 Identities=17% Similarity=0.282 Sum_probs=103.4
Q ss_pred hCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CHHHHH
Q 039523 45 LNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN--GWQLWE 122 (244)
Q Consensus 45 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~ 122 (244)
++|+++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|+ +..++.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 368889999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHhhcCCc
Q 039523 123 NYSHVALDV-GNIGQALEAVQMVLNITNNK 151 (244)
Q Consensus 123 ~la~~~~~~-~~~~~A~~~~~~al~~~p~~ 151 (244)
.+|.++... |++++|+.++++++...|+.
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 999999999 99999999999999999874
No 135
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.71 E-value=3e-16 Score=125.65 Aligned_cols=150 Identities=14% Similarity=0.013 Sum_probs=131.1
Q ss_pred CchHHHHHHhh------ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------hhHHHHHHHHHHHccCHH
Q 039523 1 MMPAMKKLWKF------QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLY-------PDGWFALGAAALKARDVE 67 (244)
Q Consensus 1 Ai~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~ 67 (244)
|+..|+++++. .|..+.++..+|.++...|+++.|+.++++++...+.. ..++..+|.++...|+++
T Consensus 120 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~ 199 (378)
T 3q15_A 120 AIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYD 199 (378)
T ss_dssp HHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHH
Confidence 56788899876 23457789999999999999999999999999875432 447889999999999999
Q ss_pred HHHHHHHHHHhcCC------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHcCCHHH
Q 039523 68 KALDVFTRAVQLDP------ENGEAWNIIACLHMIKNKSKEAFIAFKEALK-----LKRNGWQLWENYSHVALDVGNIGQ 136 (244)
Q Consensus 68 ~A~~~~~~a~~~~p------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-----~~p~~~~~~~~la~~~~~~~~~~~ 136 (244)
+|++++++++.+.+ ....++.++|.++..+|++++|+.++++++. .+|....++..+|.++...|++++
T Consensus 200 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 279 (378)
T 3q15_A 200 KALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQK 279 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHH
Confidence 99999999998643 2346789999999999999999999999999 778888999999999999999999
Q ss_pred HHHHHHHHHhhcCC
Q 039523 137 ALEAVQMVLNITNN 150 (244)
Q Consensus 137 A~~~~~~al~~~p~ 150 (244)
|..++++++++.+.
T Consensus 280 A~~~~~~al~~~~~ 293 (378)
T 3q15_A 280 AFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998654
No 136
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-15 Score=105.30 Aligned_cols=117 Identities=18% Similarity=0.160 Sum_probs=109.0
Q ss_pred hCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHH
Q 039523 45 LNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN---GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLW 121 (244)
Q Consensus 45 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 121 (244)
..|.+...+..+|..+...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..+++++..+|+++.++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 456788899999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHH
Q 039523 122 ENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERI 161 (244)
Q Consensus 122 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 161 (244)
+.+|.++...|++++|+.+|+++++++|++......+..+
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999977666555554
No 137
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.71 E-value=2.1e-16 Score=106.66 Aligned_cols=117 Identities=17% Similarity=0.211 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc-------HHH
Q 039523 14 ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN-------GEA 86 (244)
Q Consensus 14 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~ 86 (244)
..+..+..+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++...|.+ +.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3456677778888888888888888888888887777777788888888888888888888877777655 677
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 039523 87 WNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV 131 (244)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 131 (244)
++.+|.++...|++++|+..|++++...| +...+..++.+....
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777 466666666655443
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.71 E-value=6.3e-16 Score=104.21 Aligned_cols=120 Identities=14% Similarity=0.132 Sum_probs=110.0
Q ss_pred CCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 039523 46 NSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYS 125 (244)
Q Consensus 46 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la 125 (244)
+|.++..+..+|..+...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHh
Q 039523 126 HVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNL 165 (244)
Q Consensus 126 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 165 (244)
.++...|++++|+.+++++++..|++......+.......
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 9999999999999999999999998776666555554443
No 139
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.70 E-value=7.7e-17 Score=130.00 Aligned_cols=150 Identities=17% Similarity=0.121 Sum_probs=132.4
Q ss_pred CchHHHHHHhhccCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCChhHHHHHHHHHHHccCHHHHH
Q 039523 1 MMPAMKKLWKFQMISQ----LELRSLARSAYNRGEYETSKILREAAMAL------NSLYPDGWFALGAAALKARDVEKAL 70 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~ 70 (244)
|+.+|+++++.+|+++ .++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+
T Consensus 67 A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 146 (411)
T 4a1s_A 67 GVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAA 146 (411)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHH
Confidence 5778999999999987 58899999999999999999999999987 4666788999999999999999999
Q ss_pred HHHHHHHhc------CCCcHHHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHhcC------CCCHHHH
Q 039523 71 DVFTRAVQL------DPENGEAWNIIACLHMIKNK-----------------SKEAFIAFKEALKLK------RNGWQLW 121 (244)
Q Consensus 71 ~~~~~a~~~------~p~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~a~~~~------p~~~~~~ 121 (244)
.++++++.. .|....++..+|.++...|+ +++|+.++++++.+. +....++
T Consensus 147 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 226 (411)
T 4a1s_A 147 ICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRAC 226 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999988 55667789999999999999 999999999988763 3345688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 122 ENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 122 ~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
..+|.++...|++++|+.++++++++.|.
T Consensus 227 ~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 227 GNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998765
No 140
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.70 E-value=1.1e-15 Score=103.21 Aligned_cols=112 Identities=14% Similarity=0.063 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHH
Q 039523 51 DGWFALGAAALKARDVEKALDVFTRAVQLDPENG---EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG---WQLWENY 124 (244)
Q Consensus 51 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l 124 (244)
.+++.+|.++...|++++|+..++++++.+|+++ .+++.+|.++...|++++|+..|++++...|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4578899999999999999999999999999988 899999999999999999999999999999999 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 039523 125 SHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIV 162 (244)
Q Consensus 125 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 162 (244)
|.++...|++++|+..|+++++..|+..........+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 99999999999999999999999999776555444443
No 141
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.70 E-value=3e-15 Score=99.98 Aligned_cols=117 Identities=26% Similarity=0.441 Sum_probs=106.3
Q ss_pred CCCC-hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 039523 46 NSLY-PDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENY 124 (244)
Q Consensus 46 ~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 124 (244)
+|.. ..++..+|.++...|++++|++.+++++..+|.++.++..+|.++...|++++|+..+++++...|+++.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4555 678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 039523 125 SHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIV 162 (244)
Q Consensus 125 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 162 (244)
|.++...|++++|..+++++++..|+.......+..+.
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999776655555443
No 142
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.69 E-value=7.7e-16 Score=113.16 Aligned_cols=113 Identities=12% Similarity=0.018 Sum_probs=104.9
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523 2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81 (244)
Q Consensus 2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 81 (244)
+..|++++ +| ++.++..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++..|
T Consensus 26 ~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 102 (213)
T 1hh8_A 26 LDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR 102 (213)
T ss_dssp HHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Confidence 45566553 33 7899999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CcH----------------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523 82 ENG----------------EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG 117 (244)
Q Consensus 82 ~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 117 (244)
.+. .+++.+|.++...|++++|+..++++++..|++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 103 GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred CccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 766 999999999999999999999999999999986
No 143
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.69 E-value=2.1e-16 Score=126.85 Aligned_cols=150 Identities=13% Similarity=0.171 Sum_probs=131.3
Q ss_pred CchHHHHHHhh------ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh------HHHHHHHHHHHccCHHH
Q 039523 1 MMPAMKKLWKF------QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPD------GWFALGAAALKARDVEK 68 (244)
Q Consensus 1 Ai~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~ 68 (244)
|+..|++++.+ .|....++..+|.++...|++++|+..+++++...+.... ++..+|.++...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 35567777766 4455678999999999999999999999999998765544 89999999999999999
Q ss_pred HHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHH
Q 039523 69 ALDVFTRAVQLDPEN------GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG------WQLWENYSHVALDVGNIGQ 136 (244)
Q Consensus 69 A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~~~~~~ 136 (244)
|+.++++++...|.. ..++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999887655 6788999999999999999999999999885543 6789999999999999999
Q ss_pred HHHHHHHHHhhcCC
Q 039523 137 ALEAVQMVLNITNN 150 (244)
Q Consensus 137 A~~~~~~al~~~p~ 150 (244)
|+.++++++++.+.
T Consensus 326 A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 326 AMHFAEKHLEISRE 339 (406)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998654
No 144
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.69 E-value=5.2e-16 Score=123.83 Aligned_cols=125 Identities=16% Similarity=0.170 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------hCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523 15 SQLELRSLARSAYNRGEYETSKILREAAMA----------------LNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78 (244)
Q Consensus 15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 78 (244)
.+..+..+|..++..|++++|+..|+++++ .+|.+..++.++|.++...|++++|+.+++++++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 356789999999999999999999999998 6777788899999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 039523 79 LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE 139 (244)
Q Consensus 79 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~ 139 (244)
.+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++++++..
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988888877754
No 145
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.69 E-value=2.5e-17 Score=135.12 Aligned_cols=139 Identities=12% Similarity=0.004 Sum_probs=122.5
Q ss_pred hcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---------------HHHHHHHHH
Q 039523 28 NRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN---------------GEAWNIIAC 92 (244)
Q Consensus 28 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---------------~~~~~~l~~ 92 (244)
..+++++|+..++.++...|.....+..+|..++..|++++|+..|+++++++|.+ ..+|+++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888889899999999999999999999999999999999988 689999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523 93 LHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE 166 (244)
Q Consensus 93 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 166 (244)
++..+|++++|+..|.+++.++|++..+++++|.++..+|++++|+.+|+++++++|++......+..+...+.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAK 399 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999997766666655554443
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.68 E-value=7.7e-16 Score=116.78 Aligned_cols=130 Identities=15% Similarity=-0.033 Sum_probs=107.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCh
Q 039523 23 ARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN--GEAWNIIACLHMIKNKS 100 (244)
Q Consensus 23 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~~~~ 100 (244)
+..+...|++++|...|...+...|++. +.+.+|.++.+.|++++|+..++++....+.. ..+++.+|.++..+|++
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~ 187 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALF 187 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCH
Confidence 3566777888888888888888888777 88888888899999999999888776653221 35889999999999999
Q ss_pred HHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhh
Q 039523 101 KEAFIAFKEALKLK--RN-GWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRID 154 (244)
Q Consensus 101 ~~A~~~~~~a~~~~--p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 154 (244)
++|+.+|++++... |. ...+++.+|.++..+|+.++|...|++++..+|+ ...
T Consensus 188 ~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~ 243 (282)
T 4f3v_A 188 TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKV 243 (282)
T ss_dssp HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHH
T ss_pred HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHH
Confidence 99999999998654 55 5678999999999999999999999999999997 443
No 147
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=127.47 Aligned_cols=150 Identities=15% Similarity=0.109 Sum_probs=128.3
Q ss_pred CchHHHHHHhhccCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCChhHHHHHHHHHHHccCHHHHH
Q 039523 1 MMPAMKKLWKFQMISQ----LELRSLARSAYNRGEYETSKILREAAMALN------SLYPDGWFALGAAALKARDVEKAL 70 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~ 70 (244)
|+.+|+++++..|.++ .++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|+
T Consensus 28 A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 107 (406)
T 3sf4_A 28 GVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAI 107 (406)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5678999999999884 678899999999999999999999998773 344668889999999999999999
Q ss_pred HHHHHHHhcCCCc------HHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHhc------CCCCH
Q 039523 71 DVFTRAVQLDPEN------GEAWNIIACLHMIKNK--------------------SKEAFIAFKEALKL------KRNGW 118 (244)
Q Consensus 71 ~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~a~~~------~p~~~ 118 (244)
.++++++...|.. ..++..+|.++...|+ +++|+..+.+++.+ .|...
T Consensus 108 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~ 187 (406)
T 3sf4_A 108 VCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQG 187 (406)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHH
Confidence 9999999886643 4588899999999999 99999999998876 33346
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 119 QLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 119 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
.++..+|.++...|++++|+.++++++++.|.
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 67889999999999999999999999988665
No 148
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.68 E-value=1.2e-15 Score=117.94 Aligned_cols=155 Identities=6% Similarity=0.010 Sum_probs=141.7
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhCCCChhHHHHHHHHHHHccC------HHHHHHHH
Q 039523 2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYE--TSKILREAAMALNSLYPDGWFALGAAALKARD------VEKALDVF 73 (244)
Q Consensus 2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------~~~A~~~~ 73 (244)
+.+++++++.+|.+..+|...+.+....|.++ +++.++.++++.+|.|..+|...+.+....|. ++++++++
T Consensus 130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~ 209 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYV 209 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence 67899999999999999999999999999999 99999999999999999999999999999988 99999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCChHH-HHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hc
Q 039523 74 TRAVQLDPENGEAWNIIACLHMIKNKSKE-AFIAFKEALKLK---RNGWQLWENYSHVALDVGNIGQALEAVQMVLN-IT 148 (244)
Q Consensus 74 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~-A~~~~~~a~~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~ 148 (244)
.+++..+|++..+|+.++.++...|+..+ ...++.+++... |.++.++..++.++...|+.++|+++++.+.+ .+
T Consensus 210 ~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~D 289 (306)
T 3dra_A 210 KDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYN 289 (306)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999998655 445677777766 88999999999999999999999999999996 79
Q ss_pred CCchhhHH
Q 039523 149 NNKRIDTE 156 (244)
Q Consensus 149 p~~~~~~~ 156 (244)
|.....+.
T Consensus 290 pir~~yW~ 297 (306)
T 3dra_A 290 PIRSNFWD 297 (306)
T ss_dssp GGGHHHHH
T ss_pred hHHHHHHH
Confidence 88554444
No 149
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.68 E-value=2.4e-15 Score=110.93 Aligned_cols=143 Identities=16% Similarity=0.019 Sum_probs=128.7
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH----ccCHHHHHHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRG----EYETSKILREAAMALNSLYPDGWFALGAAALK----ARDVEKALDV 72 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~ 72 (244)
|+.+|+++++. +++.+++.+|.+|.. + ++++|+.+|+++.. +.++.+++.+|.++.. .+++++|+++
T Consensus 37 A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 111 (212)
T 3rjv_A 37 AEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITL 111 (212)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHH
Confidence 46788888764 689999999999998 7 99999999999965 5689999999999998 8999999999
Q ss_pred HHHHHhcCC--CcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-C-----CHHHHHHH
Q 039523 73 FTRAVQLDP--ENGEAWNIIACLHMI----KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV-G-----NIGQALEA 140 (244)
Q Consensus 73 ~~~a~~~~p--~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~-~-----~~~~A~~~ 140 (244)
|+++....| .++.+++++|.++.. .+++++|+.+|++++.. |.++.+++++|.+|..- | ++++|+.+
T Consensus 112 ~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~ 190 (212)
T 3rjv_A 112 LQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHW 190 (212)
T ss_dssp HHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHH
T ss_pred HHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Confidence 999999988 459999999999999 88999999999999998 66788999999999864 3 89999999
Q ss_pred HHHHHhhcC
Q 039523 141 VQMVLNITN 149 (244)
Q Consensus 141 ~~~al~~~p 149 (244)
|+++.+...
T Consensus 191 ~~~A~~~g~ 199 (212)
T 3rjv_A 191 LNVSCLEGF 199 (212)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHcCC
Confidence 999998753
No 150
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.67 E-value=3e-16 Score=122.38 Aligned_cols=150 Identities=15% Similarity=0.118 Sum_probs=130.6
Q ss_pred CchHHHHHHhhccCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCChhHHHHHHHHHHHccCHHHHH
Q 039523 1 MMPAMKKLWKFQMIS----QLELRSLARSAYNRGEYETSKILREAAMAL------NSLYPDGWFALGAAALKARDVEKAL 70 (244)
Q Consensus 1 Ai~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~ 70 (244)
|+.+|+++++.+|++ ..++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+
T Consensus 24 A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 103 (338)
T 3ro2_A 24 GVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAI 103 (338)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHH
Confidence 578899999999998 478889999999999999999999999887 3445678899999999999999999
Q ss_pred HHHHHHHhcCCCc------HHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHhc------CCCCH
Q 039523 71 DVFTRAVQLDPEN------GEAWNIIACLHMIKNK--------------------SKEAFIAFKEALKL------KRNGW 118 (244)
Q Consensus 71 ~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~a~~~------~p~~~ 118 (244)
..+++++...|.. ..++..+|.++...|+ +++|+..+++++.. .+...
T Consensus 104 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 183 (338)
T 3ro2_A 104 VCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQG 183 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999876533 3488999999999999 99999999998876 23345
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 119 QLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 119 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
.++..+|.++...|++++|+.++++++++.+.
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 68899999999999999999999999988665
No 151
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.66 E-value=2.6e-15 Score=101.26 Aligned_cols=117 Identities=16% Similarity=0.112 Sum_probs=105.2
Q ss_pred ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------HHHH
Q 039523 49 YPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG-------WQLW 121 (244)
Q Consensus 49 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~ 121 (244)
.+..+..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++...|++ ..++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999999999999999999998877 8999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523 122 ENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE 166 (244)
Q Consensus 122 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 166 (244)
..+|.++...|++++|+.+|+++++..|+ +.....+..+...+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999885 545555555554443
No 152
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.65 E-value=4.9e-16 Score=121.17 Aligned_cols=149 Identities=13% Similarity=0.165 Sum_probs=126.4
Q ss_pred chHHHHHHhh------ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh------hHHHHHHHHHHHccCHHHH
Q 039523 2 MPAMKKLWKF------QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYP------DGWFALGAAALKARDVEKA 69 (244)
Q Consensus 2 i~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A 69 (244)
+..+++++.. .|....++..+|.++...|++++|+..+++++...+... .++..+|.++...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 4566666665 344567899999999999999999999999998865433 3889999999999999999
Q ss_pred HHHHHHHHhcCCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHH
Q 039523 70 LDVFTRAVQLDPEN------GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG------WQLWENYSHVALDVGNIGQA 137 (244)
Q Consensus 70 ~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~~~~~~A 137 (244)
...+++++...+.. ..++..+|.++...|++++|..++++++...+.. ..++..+|.++...|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 99999999886654 6788999999999999999999999999885532 55888999999999999999
Q ss_pred HHHHHHHHhhcCC
Q 039523 138 LEAVQMVLNITNN 150 (244)
Q Consensus 138 ~~~~~~al~~~p~ 150 (244)
..++++++++.+.
T Consensus 323 ~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 323 MHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998765
No 153
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.65 E-value=1.3e-14 Score=102.04 Aligned_cols=106 Identities=15% Similarity=0.207 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 039523 50 PDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVAL 129 (244)
Q Consensus 50 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 129 (244)
+..+..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhcCCchhhH
Q 039523 130 DVGNIGQALEAVQMVLNITNNKRIDT 155 (244)
Q Consensus 130 ~~~~~~~A~~~~~~al~~~p~~~~~~ 155 (244)
..|++++|+.+++++++..|++....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~ 118 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAK 118 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999866544
No 154
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.65 E-value=2.8e-15 Score=109.09 Aligned_cols=139 Identities=12% Similarity=0.035 Sum_probs=120.0
Q ss_pred cc-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc---CC
Q 039523 12 QM-ISQLELRSLARSAYNRGEYETSKILREAAMAL------NSLYPDGWFALGAAALKARDVEKALDVFTRAVQL---DP 81 (244)
Q Consensus 12 ~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~p 81 (244)
+| ..+.++..+|.++...|++++|+..+++++.. .+....++..+|.++...|++++|...+++++.. .+
T Consensus 21 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 100 (203)
T 3gw4_A 21 HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP 100 (203)
T ss_dssp STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 45 56889999999999999999999999999984 3445678999999999999999999999999987 44
Q ss_pred C----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 82 E----NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR--NG----WQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 82 ~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
+ ...++.++|.++...|++++|..++++++...+ .+ ..++..+|.++...|++++|..++++++++...
T Consensus 101 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 101 EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 2 346789999999999999999999999987632 22 345689999999999999999999999988654
No 155
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.65 E-value=8.3e-16 Score=106.14 Aligned_cols=90 Identities=20% Similarity=0.164 Sum_probs=60.3
Q ss_pred hcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHH----------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 039523 28 NRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVE----------KALDVFTRAVQLDPENGEAWNIIACLHMIK 97 (244)
Q Consensus 28 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~----------~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 97 (244)
+.+.|++|+..++++++.+|+++.+|.++|.++...++++ +|+..|+++++++|++..+|+++|.+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 4456777788888888888888888877777777776653 666666666666666666666666666655
Q ss_pred C-----------ChHHHHHHHHHHHhcCCCC
Q 039523 98 N-----------KSKEAFIAFKEALKLKRNG 117 (244)
Q Consensus 98 ~-----------~~~~A~~~~~~a~~~~p~~ 117 (244)
| ++++|+.+|+++++++|++
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 4 4555555555555555544
No 156
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.65 E-value=3.6e-16 Score=126.11 Aligned_cols=150 Identities=15% Similarity=0.171 Sum_probs=131.1
Q ss_pred CchHHHHHHhh------ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCChhHHHHHHHHHHHccC---
Q 039523 1 MMPAMKKLWKF------QMISQLELRSLARSAYNRGEYETSKILREAAMAL------NSLYPDGWFALGAAALKARD--- 65 (244)
Q Consensus 1 Ai~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~--- 65 (244)
|+.+|+++++. .|....++..+|.++...|++++|+..+++++.. .+....++..+|.++...|+
T Consensus 105 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 184 (411)
T 4a1s_A 105 AMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLG 184 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccc
Confidence 46788888887 6778899999999999999999999999999988 45566789999999999999
Q ss_pred --------------HHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HH
Q 039523 66 --------------VEKALDVFTRAVQLD------PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG------WQ 119 (244)
Q Consensus 66 --------------~~~A~~~~~~a~~~~------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~ 119 (244)
+++|++++++++.+. +....++..+|.++...|++++|+.++++++...+.. ..
T Consensus 185 ~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (411)
T 4a1s_A 185 QRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERR 264 (411)
T ss_dssp HHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 999999999988764 2345688999999999999999999999999987643 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 120 LWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 120 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
++..+|.++...|++++|+.++++++++.+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 295 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVE 295 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999998775
No 157
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.65 E-value=2.5e-15 Score=104.98 Aligned_cols=136 Identities=14% Similarity=0.180 Sum_probs=118.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh------hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc-----
Q 039523 15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYP------DGWFALGAAALKARDVEKALDVFTRAVQLDPEN----- 83 (244)
Q Consensus 15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----- 83 (244)
...++..+|.++...|++++|+..+++++...+... .++..+|.++...|++++|...+++++...+..
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 457889999999999999999999999998865432 478899999999999999999999999875532
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 84 -GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN------GWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 84 -~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
..++..+|.++...|++++|+.++++++...+. ...++..+|.++...|++++|..++++++++...
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999987432 2567889999999999999999999999987654
No 158
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.65 E-value=3.7e-16 Score=104.16 Aligned_cols=92 Identities=13% Similarity=0.089 Sum_probs=48.9
Q ss_pred cCCHHHHHHHHHHHHhh---CCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHH
Q 039523 29 RGEYETSKILREAAMAL---NSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFI 105 (244)
Q Consensus 29 ~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 105 (244)
.|++++|+..|+++++. +|+++.++..+|.++...|++++|+.+++++++.+|+++.+++.+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 34555555555555555 344555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhcCCCCHHH
Q 039523 106 AFKEALKLKRNGWQL 120 (244)
Q Consensus 106 ~~~~a~~~~p~~~~~ 120 (244)
.+++++...|+++.+
T Consensus 83 ~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 83 LLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHCCCHHH
T ss_pred HHHHHHHhCCCcHHH
Confidence 555555555555443
No 159
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.64 E-value=2.9e-15 Score=120.04 Aligned_cols=129 Identities=10% Similarity=0.043 Sum_probs=113.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh---CCC---ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-------cHH
Q 039523 19 LRSLARSAYNRGEYETSKILREAAMAL---NSL---YPDGWFALGAAALKARDVEKALDVFTRAVQLDPE-------NGE 85 (244)
Q Consensus 19 ~~~la~~~~~~~~~~~A~~~~~~al~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-------~~~ 85 (244)
++.+|..+...|++++|+..+++++.. .++ .+.++..+|.++...|++++|+.++.+++.+.+. ...
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 445999999999999999999999987 232 4578999999999999999999999999987443 345
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 86 AWNIIACLHMIKNKSKEAFIAFKEALKLKRNG------WQLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
++..+|.++...|++++|+.++++++.+.+.. ..++.++|.++...|++++|+.++++++++
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999885533 358999999999999999999999999994
No 160
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.64 E-value=1.1e-15 Score=105.55 Aligned_cols=103 Identities=13% Similarity=0.029 Sum_probs=92.2
Q ss_pred HHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 039523 61 LKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKS----------KEAFIAFKEALKLKRNGWQLWENYSHVALD 130 (244)
Q Consensus 61 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 130 (244)
.+.+.+++|++.++++++.+|+++.+|+++|.++...+++ ++|+..|+++++++|++..+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999998875 599999999999999999999999999998
Q ss_pred cC-----------CHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 039523 131 VG-----------NIGQALEAVQMVLNITNNKRIDTELLERIVL 163 (244)
Q Consensus 131 ~~-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 163 (244)
+| ++++|+.+|+++++++|++......+.....
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 85 8999999999999999997765555554443
No 161
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.63 E-value=2.5e-15 Score=100.06 Aligned_cols=96 Identities=7% Similarity=0.012 Sum_probs=88.1
Q ss_pred CchHHHHHHhh---ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039523 1 MMPAMKKLWKF---QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAV 77 (244)
Q Consensus 1 Ai~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 77 (244)
|+.+|+++++. +|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++
T Consensus 9 A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 9 AVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp CHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 68899999999 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHH
Q 039523 78 QLDPENGEAWNIIACLHMI 96 (244)
Q Consensus 78 ~~~p~~~~~~~~l~~~~~~ 96 (244)
...|+++........+...
T Consensus 89 ~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 89 AETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHCCCHHHHHTHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHH
Confidence 9999998876544444333
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.62 E-value=7.1e-15 Score=113.04 Aligned_cols=105 Identities=14% Similarity=0.168 Sum_probs=101.9
Q ss_pred CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 039523 47 SLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSH 126 (244)
Q Consensus 47 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~ 126 (244)
|.++..+..+|..+...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..++++++++|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523 127 VALDVGNIGQALEAVQMVLNITNNK 151 (244)
Q Consensus 127 ~~~~~~~~~~A~~~~~~al~~~p~~ 151 (244)
++...|++++|+..|+++++++|++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999875
No 163
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=4e-16 Score=130.89 Aligned_cols=150 Identities=10% Similarity=-0.001 Sum_probs=137.9
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc-CHHHHHHHHHHHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRG--EYETSKILREAAMALNSLYPDGWFALGAAALKAR-DVEKALDVFTRAV 77 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~ 77 (244)
+++.++++++.+|++..+|...+.++...+ ++++++.++.++++.+|.+..+|...+.+....| .++++++++.+++
T Consensus 92 eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I 171 (567)
T 1dce_A 92 ELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI 171 (567)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 467899999999999999999999999999 7799999999999999999999999999999999 9999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH-------
Q 039523 78 QLDPENGEAWNIIACLHMIK--------------NKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQ------- 136 (244)
Q Consensus 78 ~~~p~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~------- 136 (244)
+.+|.+..+|..++.++... +.++++++++.+++..+|++..+|+.++.++...+++++
T Consensus 172 ~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~ 251 (567)
T 1dce_A 172 TRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVS 251 (567)
T ss_dssp TTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEE
T ss_pred HHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeec
Confidence 99999999999999998885 567999999999999999999999999999999988666
Q ss_pred -----HHHHHHHHHhhcCC
Q 039523 137 -----ALEAVQMVLNITNN 150 (244)
Q Consensus 137 -----A~~~~~~al~~~p~ 150 (244)
|+.+|.+++.++|.
T Consensus 252 ~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 252 REEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp TTTTEEEEEEEEEECTTBT
T ss_pred cCCceEEEEeccceecccc
Confidence 45556677766665
No 164
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.61 E-value=2e-13 Score=105.52 Aligned_cols=139 Identities=12% Similarity=0.051 Sum_probs=120.1
Q ss_pred ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh------hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc--
Q 039523 12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYP------DGWFALGAAALKARDVEKALDVFTRAVQLDPEN-- 83 (244)
Q Consensus 12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-- 83 (244)
+|.....+...+..+...|++++|+..+.+++...+... ..++.+|.++...|++++|+..+++++...+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 455666778889999999999999999999999887654 345678899999999999999999999875543
Q ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 84 ----GEAWNIIACLHMIKNKSKEAFIAFKEAL---KLKRNGW----QLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 84 ----~~~~~~l~~~~~~~~~~~~A~~~~~~a~---~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
..++..+|.++...|++++|+.+|++++ +..|++. .++.++|.++..+|++++|+.++++++++.++
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999999999 4456543 68999999999999999999999999988643
No 165
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.60 E-value=1.5e-14 Score=115.82 Aligned_cols=148 Identities=14% Similarity=0.034 Sum_probs=119.8
Q ss_pred CchHHHHHHhhccC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------ChhHHHHHHHHHHHccCHH
Q 039523 1 MMPAMKKLWKFQMI-------SQLELRSLARSAYNRGEYETSKILREAAMALNSL------YPDGWFALGAAALKARDVE 67 (244)
Q Consensus 1 Ai~~~~~al~~~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~ 67 (244)
|+.+++++++..+. .+.++..+|.++...|++++|+..+++++...+. ...++.++|.++...|+++
T Consensus 160 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~ 239 (378)
T 3q15_A 160 SMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQ 239 (378)
T ss_dssp HHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 46788899887442 3567889999999999999999999999987431 2457889999999999999
Q ss_pred HHHHHHHHHHh-----cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----CH-------------------
Q 039523 68 KALDVFTRAVQ-----LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN-----GW------------------- 118 (244)
Q Consensus 68 ~A~~~~~~a~~-----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-----~~------------------- 118 (244)
+|+.++++++. .+|..+.++..+|.++...|++++|..++++++...+. ..
T Consensus 240 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~ 319 (378)
T 3q15_A 240 MAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKI 319 (378)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 99999999999 78888999999999999999999999999999987432 11
Q ss_pred -----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523 119 -----------------QLWENYSHVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 119 -----------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
.++..+|.++...|++++|..+|+++++..
T Consensus 320 ~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 320 HDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 234456666666777777777776666543
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.59 E-value=1.8e-15 Score=124.68 Aligned_cols=117 Identities=11% Similarity=0.112 Sum_probs=106.3
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
|++.|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|++.++++++.+
T Consensus 25 A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 104 (477)
T 1wao_1 25 AIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK 104 (477)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHH--HHHcCChHHHHHHHH-----------HHHhcCCCC
Q 039523 81 PENGEAWNIIACL--HMIKNKSKEAFIAFK-----------EALKLKRNG 117 (244)
Q Consensus 81 p~~~~~~~~l~~~--~~~~~~~~~A~~~~~-----------~a~~~~p~~ 117 (244)
|++..++..++.+ +...|++++|+..++ +++...|+.
T Consensus 105 p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 105 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 9999999999988 889999999999999 777776653
No 167
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.58 E-value=4.3e-14 Score=112.79 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=107.1
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHh----------------cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039523 50 PDGWFALGAAALKARDVEKALDVFTRAVQ----------------LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL 113 (244)
Q Consensus 50 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~----------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 113 (244)
...+..+|..++..|++++|+..|+++++ .+|.+..++.++|.++..+|++++|+.++++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 34688999999999999999999999998 77888899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523 114 KRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE 166 (244)
Q Consensus 114 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 166 (244)
+|+++.+++.+|.++..+|++++|+..|+++++++|++......+..+.....
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998776666666655444
No 168
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.57 E-value=3.5e-14 Score=110.54 Aligned_cols=134 Identities=13% Similarity=0.045 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------cH
Q 039523 17 LELRSLARSAYNRGEYETSKILREAAMALNSLY------PDGWFALGAAALKARDVEKALDVFTRAVQLDPE------NG 84 (244)
Q Consensus 17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~------~~ 84 (244)
..+...|.++...|++++|+..|.+++...+.. ..++..+|.++...|++++|+.+|++++.+.+. ..
T Consensus 37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 116 (307)
T 2ifu_A 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 356677899999999999999999999986533 457889999999999999999999999987532 24
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523 85 EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG------WQLWENYSHVALDVGNIGQALEAVQMVLNITNNK 151 (244)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 151 (244)
.++.++|.++.. |++++|+.+|++++.+.|.. ..++.++|.++..+|++++|+.+|++++++.|+.
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 678899999998 99999999999999987643 5789999999999999999999999999987654
No 169
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.56 E-value=1e-13 Score=110.52 Aligned_cols=150 Identities=15% Similarity=0.046 Sum_probs=126.5
Q ss_pred CchHHHHHHhhccCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh------hHHHHHHHHHHHccCHHHH
Q 039523 1 MMPAMKKLWKFQMISQ-----LELRSLARSAYNRGEYETSKILREAAMALNSLYP------DGWFALGAAALKARDVEKA 69 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A 69 (244)
|+..+++++...|... .++..+|.++...|++++|+..+++++...|... .++..+|.++...|++++|
T Consensus 33 A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 112 (373)
T 1hz4_A 33 AERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTA 112 (373)
T ss_dssp HHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 4567888888866542 3678899999999999999999999998765432 3467899999999999999
Q ss_pred HHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCCHHH
Q 039523 70 LDVFTRAVQLD--------PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN-----GWQLWENYSHVALDVGNIGQ 136 (244)
Q Consensus 70 ~~~~~~a~~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~~la~~~~~~~~~~~ 136 (244)
...+++++... |....++..+|.++...|++++|..++++++...+. ...++..+|.++...|++++
T Consensus 113 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 192 (373)
T 1hz4_A 113 WETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDN 192 (373)
T ss_dssp HHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999864 334567888999999999999999999999998764 34678899999999999999
Q ss_pred HHHHHHHHHhhcCC
Q 039523 137 ALEAVQMVLNITNN 150 (244)
Q Consensus 137 A~~~~~~al~~~p~ 150 (244)
|..++++++.+.+.
T Consensus 193 A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 193 ARSQLNRLENLLGN 206 (373)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987543
No 170
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.55 E-value=9.7e-13 Score=108.81 Aligned_cols=128 Identities=13% Similarity=-0.026 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc---CHHHHHHHHHHHHhcCCCcHHH
Q 039523 15 SQLELRSLARSAYNR-----GEYETSKILREAAMALNSLYPDGWFALGAAALKAR---DVEKALDVFTRAVQLDPENGEA 86 (244)
Q Consensus 15 ~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~p~~~~~ 86 (244)
++.+++.+|.++... +++++|+.+|+++++. .++.+++.+|.++...| ++++|+++|+++++. .++.+
T Consensus 290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a 365 (490)
T 2xm6_A 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAA 365 (490)
T ss_dssp CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHH
Confidence 344444444444444 4444444444444443 23344444444444433 444444444444443 34444
Q ss_pred HHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhc
Q 039523 87 WNIIACLHMI----KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD----VGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 87 ~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~ 148 (244)
++.+|.++.. .+++++|+.+|+++++.. ++.++.++|.++.. .+++++|..+|+++++..
T Consensus 366 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 366 QFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 5555555544 445555555555544432 34445555555554 445555555555555544
No 171
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.54 E-value=8.8e-15 Score=115.44 Aligned_cols=118 Identities=15% Similarity=0.118 Sum_probs=74.8
Q ss_pred CchHHHHHHhhccCCH-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHc
Q 039523 1 MMPAMKKLWKFQMISQ-----------------LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKA 63 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 63 (244)
|+..|++++...|++. .++.++|.++...|++++|+..|++++..+|++..+++.+|.++...
T Consensus 198 A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~ 277 (338)
T 2if4_A 198 AMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAEL 277 (338)
T ss_dssp HHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 5788999999999877 48999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHHcCChHHHHHHHHHHHhcCCCCH
Q 039523 64 RDVEKALDVFTRAVQLDPENGEAWNIIACL-HMIKNKSKEAFIAFKEALKLKRNGW 118 (244)
Q Consensus 64 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~-~~~~~~~~~A~~~~~~a~~~~p~~~ 118 (244)
|++++|+..|+++++++|+++.++..++.+ ....+..+.+...|.+++...|+++
T Consensus 278 g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 278 GQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp TCHHHHHHHHHHTTC-----------------------------------------
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 999999999999999999999999999988 4556778899999999999988764
No 172
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.53 E-value=9.3e-14 Score=91.99 Aligned_cols=80 Identities=13% Similarity=0.154 Sum_probs=42.8
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523 2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81 (244)
Q Consensus 2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 81 (244)
+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++...|
T Consensus 5 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 5 TERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555444
No 173
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.53 E-value=9.5e-13 Score=101.12 Aligned_cols=145 Identities=17% Similarity=0.115 Sum_probs=121.2
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CChhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNS--LYPDGWFALGAAALKARDVEKALDVFTRAVQ 78 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 78 (244)
|+..|++.++..+.+...+..+|.++...|++++|+..+.+.+..+| ++..+...++.++...|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 46677887777666777888999999999999999999999999987 7889999999999999999999999999999
Q ss_pred cCCC----cHHHHHHH--HHHHHHcC--ChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523 79 LDPE----NGEAWNII--ACLHMIKN--KSKEAFIAFKEALKLKRN--GWQLWENYSHVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 79 ~~p~----~~~~~~~l--~~~~~~~~--~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
.+|+ +......+ |.+....| ++.+|...|+++....|+ ....+++ ++..+|++++|...++.+++..
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhc
Confidence 9983 23333444 54566666 999999999999888886 3334444 8999999999999999888874
No 174
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.52 E-value=3.9e-13 Score=103.79 Aligned_cols=133 Identities=14% Similarity=0.060 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh------HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc------HH
Q 039523 18 ELRSLARSAYNRGEYETSKILREAAMALNSLYPD------GWFALGAAALKARDVEKALDVFTRAVQLDPEN------GE 85 (244)
Q Consensus 18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~ 85 (244)
.+...+..+...|++++|...+++++...+..+. .+..+|.++...|++++|+.++++++...+.. ..
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 3445578889999999999999999998876655 23358999999999999999999999865432 34
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 86 AWNIIACLHMIKNKSKEAFIAFKEALKL-------KRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
++.++|.++...|++++|+.+|++++.. .+....++.++|.++..+|++++|+.++++++++.+.
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999953 2223568899999999999999999999999998754
No 175
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.1e-14 Score=95.49 Aligned_cols=93 Identities=9% Similarity=0.123 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc------HHHHHH
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN------GEAWNI 89 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~ 89 (244)
+..+..+|.+++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777777777777777776 666677
Q ss_pred HHHHHHHcCChHHHHHHHH
Q 039523 90 IACLHMIKNKSKEAFIAFK 108 (244)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~ 108 (244)
+|.++...|+++.|+..++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 7777776666665554443
No 176
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.52 E-value=7.2e-13 Score=103.64 Aligned_cols=151 Identities=10% Similarity=0.058 Sum_probs=134.3
Q ss_pred cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 039523 13 MISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKAR-DVEKALDVFTRAVQLDPENGEAWNIIA 91 (244)
Q Consensus 13 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~l~ 91 (244)
|+...++..+..+....+..++|+..+.+++..+|++..+|...+.++...| .+++++..+++++..+|.+..+|...+
T Consensus 51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~ 130 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRL 130 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 4445566666666677777789999999999999999999999999999999 599999999999999999999999999
Q ss_pred HHHHHc-C-ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhcCCchhhHHHHHHH
Q 039523 92 CLHMIK-N-KSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIG--------QALEAVQMVLNITNNKRIDTELLERI 161 (244)
Q Consensus 92 ~~~~~~-~-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~l~~~ 161 (244)
.++... + ++++++.++.+++..+|.+..+|...+.+....|.++ ++++++.++++.+|.+..++.....+
T Consensus 131 wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~l 210 (349)
T 3q7a_A 131 LLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYL 210 (349)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999998 8 8999999999999999999999999999999998887 99999999999999966665555544
Q ss_pred HH
Q 039523 162 VL 163 (244)
Q Consensus 162 ~~ 163 (244)
..
T Consensus 211 L~ 212 (349)
T 3q7a_A 211 RV 212 (349)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 177
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.51 E-value=3.1e-13 Score=89.43 Aligned_cols=83 Identities=11% Similarity=0.043 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 68 KALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 68 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
+|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555556666666666666666666666666666666666666666666666666666666666666666666666655
Q ss_pred cCC
Q 039523 148 TNN 150 (244)
Q Consensus 148 ~p~ 150 (244)
.|+
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 553
No 178
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.51 E-value=1.2e-12 Score=107.31 Aligned_cols=138 Identities=16% Similarity=0.136 Sum_probs=122.2
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhCCCChhHHHHHHHH-H--HHccCHHHHHHHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNR----GEYETSKILREAAMALNSLYPDGWFALGAA-A--LKARDVEKALDVF 73 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~--~~~g~~~~A~~~~ 73 (244)
|+.+|+++.+..|..+..++.+|.+|... +++++|+.+|+++. |.++.+++.+|.+ + ...+++++|+.+|
T Consensus 198 A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 198 LLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYL 274 (452)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 46789999999999999989999999766 79999999999988 8899999999998 4 5789999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 039523 74 TRAVQLDPENGEAWNIIACLHMIKN-----KSKEAFIAFKEALKLKRNGWQLWENYSHVALD----VGNIGQALEAVQMV 144 (244)
Q Consensus 74 ~~a~~~~p~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a 144 (244)
+++... .++.+++++|.++. .| ++++|+.+|+++. +.++.+++++|.+|.. ..++++|+.+|+++
T Consensus 275 ~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 348 (452)
T 3e4b_A 275 DNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTA 348 (452)
T ss_dssp HHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH
T ss_pred HHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 999865 48999999999998 55 9999999999998 8899999999998887 44999999999999
Q ss_pred Hhh
Q 039523 145 LNI 147 (244)
Q Consensus 145 l~~ 147 (244)
.+.
T Consensus 349 a~~ 351 (452)
T 3e4b_A 349 ARN 351 (452)
T ss_dssp HTT
T ss_pred Hhh
Confidence 875
No 179
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.50 E-value=4e-12 Score=105.11 Aligned_cols=138 Identities=11% Similarity=-0.045 Sum_probs=91.6
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH----ccCHHHHHHHH
Q 039523 2 MPAMKKLWKFQMISQLELRSLARSAYN----RGEYETSKILREAAMALNSLYPDGWFALGAAALK----ARDVEKALDVF 73 (244)
Q Consensus 2 i~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~ 73 (244)
+.+|+++++. +++.+++.+|.+|.. .+++++|+.+|+++... .++.+++.+|.++.. .+++++|+.+|
T Consensus 63 ~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 138 (490)
T 2xm6_A 63 MDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWF 138 (490)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 4556666554 566677777777776 67777777777777654 356666677777766 66777777777
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 039523 74 TRAVQLDPENGEAWNIIACLHMI----KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD----VGNIGQALEAVQMVL 145 (244)
Q Consensus 74 ~~a~~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al 145 (244)
+++... .++.+++.+|.++.. .+++++|+.+|+++++. .++.++..+|.++.. .+++++|+.+|+++.
T Consensus 139 ~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 214 (490)
T 2xm6_A 139 RLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSA 214 (490)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH
Confidence 776554 456667777777666 66677777777776664 356666777776666 666777777776666
Q ss_pred hh
Q 039523 146 NI 147 (244)
Q Consensus 146 ~~ 147 (244)
+.
T Consensus 215 ~~ 216 (490)
T 2xm6_A 215 TS 216 (490)
T ss_dssp HT
T ss_pred HC
Confidence 54
No 180
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.50 E-value=4.3e-13 Score=84.58 Aligned_cols=83 Identities=25% Similarity=0.477 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 039523 15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLH 94 (244)
Q Consensus 15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 94 (244)
++.+++.+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666665
Q ss_pred HHc
Q 039523 95 MIK 97 (244)
Q Consensus 95 ~~~ 97 (244)
...
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 181
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.49 E-value=1e-12 Score=100.99 Aligned_cols=153 Identities=10% Similarity=-0.050 Sum_probs=127.5
Q ss_pred CchHHHHHHhhcc--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----ChhHHHHHH--HHHHHcc--CHHHHH
Q 039523 1 MMPAMKKLWKFQM--ISQLELRSLARSAYNRGEYETSKILREAAMALNSL----YPDGWFALG--AAALKAR--DVEKAL 70 (244)
Q Consensus 1 Ai~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la--~~~~~~g--~~~~A~ 70 (244)
|++++.+.+..+| ++.+++..++.++..+|+.+.|.+.++++.+.+|+ +..+...++ .+.+..| ++.+|.
T Consensus 119 AL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~ 198 (310)
T 3mv2_B 119 SLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNF 198 (310)
T ss_dssp HHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHH
T ss_pred HHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHH
Confidence 4677888877776 88999999999999999999999999999999983 233444444 4466666 999999
Q ss_pred HHHHHHHhcCCC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----------CCCCHHHHHHHHHHHHHcCCHHHHH
Q 039523 71 DVFTRAVQLDPE--NGEAWNIIACLHMIKNKSKEAFIAFKEALKL----------KRNGWQLWENYSHVALDVGNIGQAL 138 (244)
Q Consensus 71 ~~~~~a~~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------~p~~~~~~~~la~~~~~~~~~~~A~ 138 (244)
..|+++....|+ .+..+++ ++..+|++++|...++.+++. +|+++.++.+++.+...+|+ +|.
T Consensus 199 ~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~ 273 (310)
T 3mv2_B 199 YYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTE 273 (310)
T ss_dssp HHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTH
T ss_pred HHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHH
Confidence 999999998887 3444444 899999999999999988776 48899999999999999998 899
Q ss_pred HHHHHHHhhcCCchhhHHHH
Q 039523 139 EAVQMVLNITNNKRIDTELL 158 (244)
Q Consensus 139 ~~~~~al~~~p~~~~~~~~l 158 (244)
+++.++.+..|+++.....-
T Consensus 274 ~l~~qL~~~~P~hp~i~d~~ 293 (310)
T 3mv2_B 274 DLTNQLVKLDHEHAFIKHHQ 293 (310)
T ss_dssp HHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHH
Confidence 99999999999988655443
No 182
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.49 E-value=2.6e-14 Score=93.72 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=82.9
Q ss_pred ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHH
Q 039523 49 YPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG------WQLWE 122 (244)
Q Consensus 49 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~ 122 (244)
++.++..+|.++...|++++|++.|+++++.+|+++.++.++|.++...|++++|+..+++++.++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 456788899999999999999999999999999999999999999999999999999999999999998 88888
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 039523 123 NYSHVALDVGNIGQALEAVQ 142 (244)
Q Consensus 123 ~la~~~~~~~~~~~A~~~~~ 142 (244)
.+|.++...|+++.|+..++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 89999888887776655543
No 183
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.48 E-value=6.8e-13 Score=83.63 Aligned_cols=85 Identities=27% Similarity=0.479 Sum_probs=78.3
Q ss_pred CChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 039523 48 LYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV 127 (244)
Q Consensus 48 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 127 (244)
.++.+++.+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|++..++..+|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHcC
Q 039523 128 ALDVG 132 (244)
Q Consensus 128 ~~~~~ 132 (244)
+...|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 87654
No 184
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.47 E-value=1.7e-12 Score=106.35 Aligned_cols=140 Identities=11% Similarity=0.036 Sum_probs=122.5
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHc----cCHHHHHHHHHHHHhcCCCcHHH
Q 039523 14 ISQLELRSLARSAYNRG---EYETSKILREAAMALNSLYPDGWFALGAAALKA----RDVEKALDVFTRAVQLDPENGEA 86 (244)
Q Consensus 14 ~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~~~~p~~~~~ 86 (244)
.++.+++.+|.++...| ++++|+.+|+++....|.....++.+|.+|... +++++|+.+|+++. |.++.+
T Consensus 174 ~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a 250 (452)
T 3e4b_A 174 TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPAS 250 (452)
T ss_dssp TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHH
T ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHH
Confidence 34459999999999999 999999999999999999999889999999766 79999999999998 899999
Q ss_pred HHHHHHH-H--HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhcCCchhhHHHH
Q 039523 87 WNIIACL-H--MIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG-----NIGQALEAVQMVLNITNNKRIDTELL 158 (244)
Q Consensus 87 ~~~l~~~-~--~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~l 158 (244)
++++|.+ + ...+++++|+.+|+++.+. .++.+++++|.+|. .| ++++|+.+|+++. |+++.....+
T Consensus 251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~L 324 (452)
T 3e4b_A 251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYL 324 (452)
T ss_dssp HHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHH
Confidence 9999998 4 5789999999999999865 48999999999998 56 9999999999998 6655555555
Q ss_pred HHHH
Q 039523 159 ERIV 162 (244)
Q Consensus 159 ~~~~ 162 (244)
..+.
T Consensus 325 g~~y 328 (452)
T 3e4b_A 325 GQIY 328 (452)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 185
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.44 E-value=2.1e-12 Score=93.73 Aligned_cols=125 Identities=17% Similarity=0.142 Sum_probs=102.8
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHcCC
Q 039523 26 AYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ------LDPENGEAWNIIACLHMIKNK 99 (244)
Q Consensus 26 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~------~~p~~~~~~~~l~~~~~~~~~ 99 (244)
.+..|++++|...++......+....++..+|.++...|++++|+..+++++. ..|....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 35689999999966555443336678999999999999999999999999998 444567789999999999999
Q ss_pred hHHHHHHHHHHHhc---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 100 SKEAFIAFKEALKL---KRN----GWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 100 ~~~A~~~~~~a~~~---~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
+++|+.++++++.. .++ ...++.++|.++...|++++|+.++++++++.+.
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 139 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ 139 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 99999999999988 442 3567899999999999999999999999987543
No 186
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=4.1e-12 Score=101.14 Aligned_cols=135 Identities=11% Similarity=0.008 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh-----HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH------
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPD-----GWFALGAAALKARDVEKALDVFTRAVQLDPENG------ 84 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~------ 84 (244)
..++..+|.++...|++++|+..+++++...|.... ++..+|.++...|++++|...+++++...|...
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 466788899999999999999999999998876532 678899999999999999999999998765332
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 85 EAWNIIACLHMIKNKSKEAFIAFKEALKLK--------RNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
.++..+|.++...|++++|...+++++... |....++.++|.++...|++++|..++++++...+.
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 346789999999999999999999999874 334567888999999999999999999999998775
No 187
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.42 E-value=2.3e-12 Score=83.07 Aligned_cols=70 Identities=13% Similarity=0.227 Sum_probs=51.2
Q ss_pred ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523 12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81 (244)
Q Consensus 12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 81 (244)
+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++++.|
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 5777777777777777777777777777777777777777777777777777777777777777776654
No 188
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.38 E-value=5e-12 Score=81.49 Aligned_cols=71 Identities=13% Similarity=0.204 Sum_probs=49.0
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++++.|+
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 56667777777777777777777777777777777777777777777777777777777777777766554
No 189
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.38 E-value=1.3e-12 Score=83.92 Aligned_cols=88 Identities=14% Similarity=0.139 Sum_probs=47.5
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 039523 55 ALGAAALKARDVEKALDVFTRAVQLDPENGE-AWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGN 133 (244)
Q Consensus 55 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~ 133 (244)
..|.++...|++++|+..++++++.+|+++. +++.+|.++...|++++|+..|+++++.+|++..++.+ +.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 3455555555555555555555555555555 55555555555555555555555555555555544422 34
Q ss_pred HHHHHHHHHHHHhhcCC
Q 039523 134 IGQALEAVQMVLNITNN 150 (244)
Q Consensus 134 ~~~A~~~~~~al~~~p~ 150 (244)
+.++...|++++..+|+
T Consensus 77 ~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHhccCcc
Confidence 44555555555555444
No 190
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.37 E-value=1.4e-12 Score=83.76 Aligned_cols=91 Identities=16% Similarity=0.233 Sum_probs=81.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 039523 19 LRSLARSAYNRGEYETSKILREAAMALNSLYPD-GWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIK 97 (244)
Q Consensus 19 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 97 (244)
.+..|..+...|++++|+..++++++.+|+++. +++.+|.++...|++++|++.|+++++.+|+++.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 357899999999999999999999999999999 99999999999999999999999999999999988754
Q ss_pred CChHHHHHHHHHHHhcCCCC
Q 039523 98 NKSKEAFIAFKEALKLKRNG 117 (244)
Q Consensus 98 ~~~~~A~~~~~~a~~~~p~~ 117 (244)
+.+.+++..|++++..+|++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHHhccCccc
Confidence 55677888888777776654
No 191
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.35 E-value=3.1e-12 Score=97.05 Aligned_cols=121 Identities=10% Similarity=-0.124 Sum_probs=102.4
Q ss_pred hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--hhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLY--PDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
+.|+.++..+|++. ..+.+|.+++..++|++|+..++++....+.. ..+++.+|.++...|++++|+.+|++++...
T Consensus 123 ~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~ 201 (282)
T 4f3v_A 123 EALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP 201 (282)
T ss_dssp HHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred HHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 34444444578888 99999999999999999999999877653221 3589999999999999999999999998654
Q ss_pred --CC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 039523 81 --PE-NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYS 125 (244)
Q Consensus 81 --p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la 125 (244)
|. .+.+++.+|.++..+|+.++|...|++++..+|+ ..++..+.
T Consensus 202 ~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 202 AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 65 6789999999999999999999999999999998 77766653
No 192
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.35 E-value=7.1e-11 Score=92.39 Aligned_cols=143 Identities=15% Similarity=0.095 Sum_probs=112.7
Q ss_pred HHhhccCCHHHH--HHHHHHHHhcCC---HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCH-------HHHH-HHHH
Q 039523 8 LWKFQMISQLEL--RSLARSAYNRGE---YETSKILREAAMALNSLYPDGWFALGAAALKARDV-------EKAL-DVFT 74 (244)
Q Consensus 8 al~~~p~~~~~~--~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-------~~A~-~~~~ 74 (244)
+....|.++.+| +..|..++..++ ..+|+.+|+++++.+|+++.++..++.++.....+ ..+. ..+.
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 344456665544 566777776544 58899999999999999999999888887632111 1111 1222
Q ss_pred --HHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523 75 --RAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK 151 (244)
Q Consensus 75 --~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 151 (244)
.++..+|.++.++..++..+...|++++|+..+++++.++|+ ...+..+|.++...|++++|++.|.+|++++|..
T Consensus 266 a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 266 NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 233567999999999999999999999999999999999974 7788899999999999999999999999999984
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.35 E-value=3.9e-12 Score=88.49 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=97.9
Q ss_pred CchHHHHHHhhccCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------hhHHHHHHHHHHHccCHHH
Q 039523 1 MMPAMKKLWKFQMIS------QLELRSLARSAYNRGEYETSKILREAAMALNSLY------PDGWFALGAAALKARDVEK 68 (244)
Q Consensus 1 Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~ 68 (244)
|+..|+++++..+.. ..++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++
T Consensus 28 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 107 (164)
T 3ro3_A 28 AVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK 107 (164)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHH
Confidence 467888888875432 2588999999999999999999999999876543 5678899999999999999
Q ss_pred HHHHHHHHHhcCC------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 039523 69 ALDVFTRAVQLDP------ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN 116 (244)
Q Consensus 69 A~~~~~~a~~~~p------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 116 (244)
|..++++++...+ ....++..+|.++...|++++|..++++++++...
T Consensus 108 A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 108 AIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 9999999997643 22467889999999999999999999999887543
No 194
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.34 E-value=6.5e-11 Score=100.97 Aligned_cols=150 Identities=7% Similarity=-0.042 Sum_probs=92.4
Q ss_pred hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc--
Q 039523 3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSK-ILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL-- 79 (244)
Q Consensus 3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-- 79 (244)
..|++++...|.++..|+..+......|+.++|+ ..|.+++...|.+...|..++......|++++|...|++++..
T Consensus 330 ~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~ 409 (679)
T 4e6h_A 330 YVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIH 409 (679)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777777766675 7777777777766666777777777777777777777776653
Q ss_pred ---------CCC-----------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCC-HHHH
Q 039523 80 ---------DPE-----------NGEAWNIIACLHMIKNKSKEAFIAFKEALKL-KRNGWQLWENYSHVALDVGN-IGQA 137 (244)
Q Consensus 80 ---------~p~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~la~~~~~~~~-~~~A 137 (244)
.|. ...+|...+.+..+.|..+.|...|.+|++. .+....+|...+.+....++ .+.|
T Consensus 410 ~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~A 489 (679)
T 4e6h_A 410 LDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTA 489 (679)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHH
T ss_pred HHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHH
Confidence 132 2335666666666666666666666666655 33334445555554444432 5566
Q ss_pred HHHHHHHHhhcCCch
Q 039523 138 LEAVQMVLNITNNKR 152 (244)
Q Consensus 138 ~~~~~~al~~~p~~~ 152 (244)
...|+++++..|+.+
T Consensus 490 r~ife~~Lk~~p~~~ 504 (679)
T 4e6h_A 490 CKVLELGLKYFATDG 504 (679)
T ss_dssp HHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHCCCch
Confidence 666666665555543
No 195
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.34 E-value=7.5e-11 Score=105.45 Aligned_cols=155 Identities=12% Similarity=0.081 Sum_probs=102.8
Q ss_pred hHHHHHHhh--ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523 3 PAMKKLWKF--QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80 (244)
Q Consensus 3 ~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 80 (244)
..+++|++. ..+.+.+|..+|.++...|++++|+..|.++ +++..+..+|.++.+.|++++|+++|..+.+..
T Consensus 1090 ~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A 1090 GNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA 1164 (1630)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 456666665 3677888889999999999999999888775 677888888888888888888888887766554
Q ss_pred CCc---------------------------H--------------------------HHHHHHHHHHHHcCChHHHHHHH
Q 039523 81 PEN---------------------------G--------------------------EAWNIIACLHMIKNKSKEAFIAF 107 (244)
Q Consensus 81 p~~---------------------------~--------------------------~~~~~l~~~~~~~~~~~~A~~~~ 107 (244)
++. . ..|..+|.++.++|++++|++.+
T Consensus 1165 ~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A 1165 RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred ccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHH
Confidence 321 1 23444555555555555555555
Q ss_pred HHHHhcCC-------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 039523 108 KEALKLKR-------------------------NGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIV 162 (244)
Q Consensus 108 ~~a~~~~p-------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 162 (244)
+++....+ .++..+..++..|...|.+++|+.+++.++.++|.+......+..+.
T Consensus 1245 rKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLy 1324 (1630)
T 1xi4_A 1245 RKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY 1324 (1630)
T ss_pred HHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHH
Confidence 55522221 12233445566677778888888888888877766444443343333
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.32 E-value=1.6e-11 Score=101.04 Aligned_cols=129 Identities=11% Similarity=-0.058 Sum_probs=107.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCh---hHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCc---
Q 039523 20 RSLARSAYNRGEYETSKILREAAMAL-----NSLYP---DGWFALGAAALKARDVEKALDVFTRAVQL-----DPEN--- 83 (244)
Q Consensus 20 ~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p~~--- 83 (244)
...+..+..+|+|++|+..+++++.. .|+++ ..+.++|.+|..+|+|++|+.++++++.+ .|++
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 34455677899999999999999985 34554 57889999999999999999999999875 3444
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523 84 GEAWNIIACLHMIKNKSKEAFIAFKEALKL-----KRNG---WQLWENYSHVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
...+.++|.+|..+|++++|..++++++.+ .|++ .....+++.++..++.+++|...|.++.+..
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999976 4555 4556788999999999999999999986543
No 197
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.31 E-value=3.1e-11 Score=97.89 Aligned_cols=150 Identities=10% Similarity=0.042 Sum_probs=125.4
Q ss_pred CchHHHHHHhhccCCH-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh------hHHHHHH
Q 039523 1 MMPAMKKLWKFQMISQ-----------------LELRSLARSAYNRGEYETSKILREAAMALNSLYP------DGWFALG 57 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la 57 (244)
|++.|.++++..|... .++..+|.+|...|++++|+.++.+++...+... .+...++
T Consensus 23 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (434)
T 4b4t_Q 23 AEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIE 102 (434)
T ss_dssp HHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 5678888888766542 4688999999999999999999999998765543 2456778
Q ss_pred HHHHHccCHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCCHHHHHHHH
Q 039523 58 AAALKARDVEKALDVFTRAVQLDP------ENGEAWNIIACLHMIKNKSKEAFIAFKEALKL------KRNGWQLWENYS 125 (244)
Q Consensus 58 ~~~~~~g~~~~A~~~~~~a~~~~p------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~~~~la 125 (244)
.++...|++++|+.++.+++...+ ....++..+|.++...|++++|...+++++.. .+....++..++
T Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 182 (434)
T 4b4t_Q 103 KFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLES 182 (434)
T ss_dssp HHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence 888889999999999999887532 34678899999999999999999999998765 233467899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 126 HVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 126 ~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
.+|...|++++|..++++++...+.
T Consensus 183 ~~~~~~~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 183 KVYHKLRNLAKSKASLTAARTAANS 207 (434)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999987654
No 198
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.31 E-value=1.2e-10 Score=99.26 Aligned_cols=148 Identities=10% Similarity=0.004 Sum_probs=132.1
Q ss_pred hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----------CC-----------ChhHHHHHHHHH
Q 039523 3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALN-----------SL-----------YPDGWFALGAAA 60 (244)
Q Consensus 3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----------p~-----------~~~~~~~la~~~ 60 (244)
..|++|+...|.+...|..++......|++++|...|++++... |. ...+|..++.+.
T Consensus 365 ~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 365 KYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999752 43 345799999999
Q ss_pred HHccCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 039523 61 LKARDVEKALDVFTRAVQL-DPENGEAWNIIACLHMIKNK-SKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQAL 138 (244)
Q Consensus 61 ~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~ 138 (244)
.+.|+.+.|...|.++++. .+....+|...+.+....++ ++.|...|+.+++..|+++..|...+......|+.+.|.
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999999988 55567788888887777654 899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCC
Q 039523 139 EAVQMVLNITNN 150 (244)
Q Consensus 139 ~~~~~al~~~p~ 150 (244)
..|++++...|+
T Consensus 525 ~lferal~~~~~ 536 (679)
T 4e6h_A 525 SLFESSIDKISD 536 (679)
T ss_dssp HHHHHHTTTSSS
T ss_pred HHHHHHHHhcCC
Confidence 999999998874
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.29 E-value=1.4e-10 Score=79.30 Aligned_cols=111 Identities=16% Similarity=0.122 Sum_probs=96.5
Q ss_pred CCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCChHHHHH
Q 039523 30 GEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI----KNKSKEAFI 105 (244)
Q Consensus 30 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~----~~~~~~A~~ 105 (244)
+++++|+.+|+++.+... +.+. +|.++...+.+++|+++|+++.+. .++.+++++|.++.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 468899999999998864 3344 899999989999999999999886 688999999999998 899999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhc
Q 039523 106 AFKEALKLKRNGWQLWENYSHVALD----VGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 106 ~~~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~ 148 (244)
+|+++.+. .++.+++++|.+|.. .+++++|+.+|+++.+..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999886 578899999999999 899999999999998874
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.29 E-value=1.5e-10 Score=79.17 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=99.4
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH----ccCHHHHHHHHHHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALK----ARDVEKALDVFTRA 76 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a 76 (244)
|+.+|+++.+... +.+. +|.+|...+..++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+++|+++
T Consensus 14 A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 87 (138)
T 1klx_A 14 AIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKA 87 (138)
T ss_dssp HHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 5678899988764 3344 999999999999999999999987 689999999999999 89999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 039523 77 VQLDPENGEAWNIIACLHMI----KNKSKEAFIAFKEALKLKRNGWQLWENYS 125 (244)
Q Consensus 77 ~~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la 125 (244)
.+. .++.+.+++|.++.. .+++++|+.+|+++.+.. ++.+..+++
T Consensus 88 a~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 88 CGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 986 689999999999999 899999999999999874 455555544
No 201
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.24 E-value=9.2e-11 Score=91.78 Aligned_cols=117 Identities=9% Similarity=0.007 Sum_probs=96.4
Q ss_pred CchHHHHHHhhccCCHHHHHHHHHHHHhcCCH-------HHHHH-HHH--HHHhhCCCChhHHHHHHHHHHHccCHHHHH
Q 039523 1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEY-------ETSKI-LRE--AAMALNSLYPDGWFALGAAALKARDVEKAL 70 (244)
Q Consensus 1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~-------~~A~~-~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 70 (244)
|+.+|++|++++|+.+.++..++.++.....+ ..++. .++ .++..+|.++.++..++..+...|++++|+
T Consensus 218 A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~ 297 (372)
T 3ly7_A 218 ASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESY 297 (372)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHH
Confidence 57899999999999999999988888632111 11111 122 123557889999999999999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH
Q 039523 71 DVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGW 118 (244)
Q Consensus 71 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 118 (244)
..+++++.++| +..+|..+|.++...|++++|++.|.+|+.++|...
T Consensus 298 ~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 298 QAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 99999999997 477888999999999999999999999999999765
No 202
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.23 E-value=7e-10 Score=83.56 Aligned_cols=150 Identities=15% Similarity=0.143 Sum_probs=114.0
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHHHh-------c--------------CCHHHHHHHHHHHH-------hh--------
Q 039523 2 MPAMKKLWKFQMISQLELRSLARSAYN-------R--------------GEYETSKILREAAM-------AL-------- 45 (244)
Q Consensus 2 i~~~~~al~~~p~~~~~~~~la~~~~~-------~--------------~~~~~A~~~~~~al-------~~-------- 45 (244)
+.+++-.+..+|++...+...|..|.. . .++..|...|.++. +.
T Consensus 52 Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~~~~~ 131 (301)
T 3u64_A 52 LKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPGFTRE 131 (301)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 456777888899997766555544432 1 12445555555543 22
Q ss_pred ----------------CCCChhHHHHHHHHHHH-----cc------CHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHH
Q 039523 46 ----------------NSLYPDGWFALGAAALK-----AR------DVEKALDVFTRAVQLDPE--NGEAWNIIACLHMI 96 (244)
Q Consensus 46 ----------------~p~~~~~~~~la~~~~~-----~g------~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~ 96 (244)
+|+++.+++..|.+... .| ....|...++++++++|+ +..+|..+|.+|..
T Consensus 132 ~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 132 VFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp HTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred HHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHh
Confidence 23445566666655433 12 367899999999999999 67799999999999
Q ss_pred c-----CChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhcCCc
Q 039523 97 K-----NKSKEAFIAFKEALKLKRNG-WQLWENYSHVALD-VGNIGQALEAVQMVLNITNNK 151 (244)
Q Consensus 97 ~-----~~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~ 151 (244)
. |+.++|..+|+++++++|+. ..+++.+|..+.. .|+++.+..++++++...|..
T Consensus 212 vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 5 99999999999999999975 9999999999988 599999999999999987773
No 203
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.19 E-value=5.9e-10 Score=70.47 Aligned_cols=71 Identities=11% Similarity=0.077 Sum_probs=56.7
Q ss_pred CCCcHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 80 DPENGEAWNIIACLHMIKNK---SKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 80 ~p~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
+|+++..+..+|.+++..++ .++|...++++++.+|+++.++..+|..+...|+|++|+.+|+++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57778888888888765555 678888888888888888888888888888888888888888888888877
No 204
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.15 E-value=5.2e-10 Score=89.77 Aligned_cols=134 Identities=11% Similarity=0.170 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM 95 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 95 (244)
..+|..+|..++..|.|++|+.+|.++ ..|..+|.++.+.|++++|++.+.++ .++.+|...+.++.
T Consensus 122 ~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv 188 (449)
T 1b89_A 122 NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACV 188 (449)
T ss_dssp ---------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHH
Confidence 457888888888888888888888866 46778888888888888888888888 46788888888888
Q ss_pred HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523 96 IKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE 166 (244)
Q Consensus 96 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 166 (244)
..|+++.|..+... +...| .-...+..+|.+.|++++|+.++++++.+++.+-.....+..+...+.
T Consensus 189 ~~~ef~lA~~~~l~-L~~~a---d~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~ 255 (449)
T 1b89_A 189 DGKEFRLAQMCGLH-IVVHA---DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 255 (449)
T ss_dssp HTTCHHHHHHTTTT-TTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred HcCcHHHHHHHHHH-HHhCH---hhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC
Confidence 88888888776654 33444 334567888999999999999999999999876555555555544443
No 205
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.14 E-value=7.5e-10 Score=70.01 Aligned_cols=72 Identities=14% Similarity=0.202 Sum_probs=48.8
Q ss_pred ccCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc
Q 039523 12 QMISQLELRSLARSAYNRGE---YETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN 83 (244)
Q Consensus 12 ~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 83 (244)
+|+++..+..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.++++++..+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 46666777777776655444 5667777777777777777777777777777777777777777777666653
No 206
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.11 E-value=1.4e-09 Score=74.29 Aligned_cols=103 Identities=13% Similarity=0.038 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q 039523 65 DVEKALDVFTRAVQLDPENGEAWNIIACLHMIKN---KSKEAFIAFKEALKLK-R-NGWQLWENYSHVALDVGNIGQALE 139 (244)
Q Consensus 65 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~-p-~~~~~~~~la~~~~~~~~~~~A~~ 139 (244)
....+.+.|.+.++.+|.+..+.+++|.++.+.+ +.++++..++..++.+ | +..++++++|..+.+.|+|++|+.
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3466777788888888889999999999999988 6679999999999988 7 568899999999999999999999
Q ss_pred HHHHHHhhcCCchhhHHHHHHHHHHhcc
Q 039523 140 AVQMVLNITNNKRIDTELLERIVLNLEG 167 (244)
Q Consensus 140 ~~~~al~~~p~~~~~~~~l~~~~~~~~~ 167 (244)
+++++++++|++.........+...+.+
T Consensus 93 y~~~lL~ieP~n~QA~~Lk~~ie~~~~k 120 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELERLIDKAMKK 120 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999987777666666665553
No 207
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.08 E-value=2.3e-09 Score=73.18 Aligned_cols=96 Identities=11% Similarity=0.043 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc---CHHHHHHHHHHHHhcC-C-CcHHHHHHHHHHHHHcCChHHHHHH
Q 039523 32 YETSKILREAAMALNSLYPDGWFALGAAALKAR---DVEKALDVFTRAVQLD-P-ENGEAWNIIACLHMIKNKSKEAFIA 106 (244)
Q Consensus 32 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~-p-~~~~~~~~l~~~~~~~~~~~~A~~~ 106 (244)
...+...|.+.+..++.+..+.+.+|.++.+.+ +.++++..++.+++.+ | +..++++++|..+++.|+|++|..+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 456777888888888889999999999999988 6779999999999988 7 5688999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHH
Q 039523 107 FKEALKLKRNGWQLWENYSHV 127 (244)
Q Consensus 107 ~~~a~~~~p~~~~~~~~la~~ 127 (244)
++++++.+|++..+......+
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHH
Confidence 999999999988776554443
No 208
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.04 E-value=4.3e-10 Score=92.51 Aligned_cols=114 Identities=8% Similarity=0.005 Sum_probs=95.0
Q ss_pred CchHHHHHHhh--------ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCh---hHHHHHHHHHHHcc
Q 039523 1 MMPAMKKLWKF--------QMISQLELRSLARSAYNRGEYETSKILREAAMAL-----NSLYP---DGWFALGAAALKAR 64 (244)
Q Consensus 1 Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g 64 (244)
|+.+|++++++ +|+....+.++|.+|..+|+|++|+.++++++.. .|+++ ..+.++|.+|...|
T Consensus 328 A~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G 407 (490)
T 3n71_A 328 VVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAG 407 (490)
T ss_dssp HHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC
Confidence 45678888876 4455678899999999999999999999999975 35554 56889999999999
Q ss_pred CHHHHHHHHHHHHhc-----CCCcHH---HHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 039523 65 DVEKALDVFTRAVQL-----DPENGE---AWNIIACLHMIKNKSKEAFIAFKEALKLK 114 (244)
Q Consensus 65 ~~~~A~~~~~~a~~~-----~p~~~~---~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 114 (244)
++++|+.+|++++.+ .|+++. ...+++.++..++.+++|...|.++.+..
T Consensus 408 ~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 408 HIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999975 566654 56788999999999999999998876543
No 209
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.03 E-value=3.1e-08 Score=81.91 Aligned_cols=140 Identities=14% Similarity=0.050 Sum_probs=115.8
Q ss_pred hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHH------------------------
Q 039523 3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGA------------------------ 58 (244)
Q Consensus 3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~------------------------ 58 (244)
.+|++++...|..+..|...+..+...|+.++|...|++++.. |.+...|...+.
T Consensus 200 ~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~ 278 (493)
T 2uy1_A 200 FIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAE 278 (493)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC--------
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhh
Confidence 5799999999999999999999999999999999999999999 987655544433
Q ss_pred ----------------HHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCHHHH
Q 039523 59 ----------------AALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKN-KSKEAFIAFKEALKLKRNGWQLW 121 (244)
Q Consensus 59 ----------------~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~ 121 (244)
...+.++.+.|...|.++ ...+....+|...+.+....+ +.+.|...|+.+++..|+.+..|
T Consensus 279 ~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~ 357 (493)
T 2uy1_A 279 KVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLK 357 (493)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHH
Confidence 233467788899999999 444446677777777766666 59999999999999999988888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 039523 122 ENYSHVALDVGNIGQALEAVQMV 144 (244)
Q Consensus 122 ~~la~~~~~~~~~~~A~~~~~~a 144 (244)
...+......|+.+.|...|+++
T Consensus 358 ~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 358 EEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888899999988887776
No 210
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.03 E-value=1.9e-08 Score=90.43 Aligned_cols=112 Identities=16% Similarity=0.180 Sum_probs=91.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChH
Q 039523 22 LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSK 101 (244)
Q Consensus 22 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 101 (244)
+|.++...|.+++|...|+++- .+. ..+...+...|++++|.++++++ +.+.+|+.+|.++...|+++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~----~~~---~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD----VNT---SAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC----CHH---HHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHH
Confidence 3888888999999999999862 111 12333444788888888888865 56889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 102 EAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 102 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
+|+..|.++ +++..+..+|.++...|++++|+++|..+++..++
T Consensus 1123 EAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A 1123 EAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred HHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence 999999775 77888999999999999999999999999888755
No 211
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=99.00 E-value=8.4e-09 Score=66.68 Aligned_cols=77 Identities=22% Similarity=0.229 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-------CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHH
Q 039523 15 SQLELRSLARSAYNRGEYETSKILREAAMALN-------SLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAW 87 (244)
Q Consensus 15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 87 (244)
++.-.+.+|..++..|+|..|+.+|+++++.. +..+.++..+|.++.+.|++++|+..++++++.+|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 45556777777777777777777777777653 22345566666666666666666666666666666666665
Q ss_pred HHHH
Q 039523 88 NIIA 91 (244)
Q Consensus 88 ~~l~ 91 (244)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5554
No 212
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.99 E-value=8.7e-09 Score=83.39 Aligned_cols=134 Identities=9% Similarity=0.086 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh-----------------hHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYP-----------------DGWFALGAAALKARDVEKALDVFTRAVQ 78 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~a~~ 78 (244)
|......|..+...|++++|++.|.++++..|... .++..+|.+|...|++++|.+++.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34566778999999999999999999999987653 2578999999999999999999999988
Q ss_pred cCCCcH------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523 79 LDPENG------EAWNIIACLHMIKNKSKEAFIAFKEALKLKR------NGWQLWENYSHVALDVGNIGQALEAVQMVLN 146 (244)
Q Consensus 79 ~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 146 (244)
..+... .+...++.++...|++++|+.++++++...+ ....++..+|.++...|++++|..++.+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 755432 3456678888899999999999999987633 2367889999999999999999999999987
Q ss_pred hcC
Q 039523 147 ITN 149 (244)
Q Consensus 147 ~~p 149 (244)
...
T Consensus 164 ~~~ 166 (434)
T 4b4t_Q 164 EFK 166 (434)
T ss_dssp HHT
T ss_pred HHH
Confidence 643
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.96 E-value=7.3e-09 Score=78.07 Aligned_cols=112 Identities=16% Similarity=0.048 Sum_probs=95.7
Q ss_pred HHHHHhh-ccCCHHHHHHHHHHHHh-----cC------CHHHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHc-----cC
Q 039523 5 MKKLWKF-QMISQLELRSLARSAYN-----RG------EYETSKILREAAMALNSL--YPDGWFALGAAALKA-----RD 65 (244)
Q Consensus 5 ~~~al~~-~p~~~~~~~~la~~~~~-----~~------~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~ 65 (244)
+.+++.. +|++++.++..|..... .| ....|...++++++++|+ +..++..+|.+|... |+
T Consensus 140 ~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd 219 (301)
T 3u64_A 140 LHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGG 219 (301)
T ss_dssp HHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred HHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCC
Confidence 3444443 78888888877776643 13 367889999999999998 677999999999995 99
Q ss_pred HHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCC
Q 039523 66 VEKALDVFTRAVQLDPEN-GEAWNIIACLHMI-KNKSKEAFIAFKEALKLKRN 116 (244)
Q Consensus 66 ~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~ 116 (244)
.++|.++|+++++++|+. ...++.+|..+.. .|+++.+..++++++..+|.
T Consensus 220 ~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 220 MEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 999999999999999975 9999999999988 49999999999999999876
No 214
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.96 E-value=7.3e-09 Score=83.22 Aligned_cols=141 Identities=14% Similarity=0.104 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039523 17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI 96 (244)
Q Consensus 17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 96 (244)
..|..+|.++.+.|++++|++.++++ .++.+|...+.++...|+++.|..+... +...|+. ...++.+|.+
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek 219 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQD 219 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHH
Confidence 46889999999999999999999999 4789999999999999999999887765 3344443 4468888999
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhcC-----CchhhHHHHHHHHHHhc
Q 039523 97 KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV--GNIGQALEAVQMVLNITN-----NKRIDTELLERIVLNLE 166 (244)
Q Consensus 97 ~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~~ 166 (244)
.|++++|+.++++++.+++.....+..+|.++.+- ++..+.++.|...+.+.| .....|..+..+.-.++
T Consensus 220 ~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~ 296 (449)
T 1b89_A 220 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYE 296 (449)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999888764 466667777766666655 44444444444443333
No 215
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.96 E-value=1.4e-08 Score=65.61 Aligned_cols=77 Identities=14% Similarity=0.116 Sum_probs=56.5
Q ss_pred ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHH
Q 039523 49 YPDGWFALGAAALKARDVEKALDVFTRAVQLD-------PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLW 121 (244)
Q Consensus 49 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 121 (244)
++.-++.+|..++..|+|..|+..|+++++.. +..+.++..+|.++.++|+++.|+.++++++++.|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34556778888888888888888888877752 24566777777777777777777777777777777777776
Q ss_pred HHHH
Q 039523 122 ENYS 125 (244)
Q Consensus 122 ~~la 125 (244)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6665
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.90 E-value=8.9e-09 Score=83.42 Aligned_cols=87 Identities=10% Similarity=0.103 Sum_probs=71.8
Q ss_pred HccCHHHHHHHHHHHHhc-----CCCcH---HHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCCHHHHHHHH
Q 039523 62 KARDVEKALDVFTRAVQL-----DPENG---EAWNIIACLHMIKNKSKEAFIAFKEALKL--------KRNGWQLWENYS 125 (244)
Q Consensus 62 ~~g~~~~A~~~~~~a~~~-----~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~la 125 (244)
..|+|++|+..+++++++ .|+++ ..+.++|.+|..+|+|++|+.++++++.+ +|+....+.++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999999998874 45554 46788999999999999999999999876 334456688999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhc
Q 039523 126 HVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 126 ~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
.+|..+|++++|+.+|++|+++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHH
Confidence 99999999999999999998864
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.86 E-value=2.9e-08 Score=80.41 Aligned_cols=96 Identities=14% Similarity=0.031 Sum_probs=80.0
Q ss_pred HHhcCCHHHHHHHHHHHHhh-----CCCCh---hHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCc---HHHHHH
Q 039523 26 AYNRGEYETSKILREAAMAL-----NSLYP---DGWFALGAAALKARDVEKALDVFTRAVQL-----DPEN---GEAWNI 89 (244)
Q Consensus 26 ~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p~~---~~~~~~ 89 (244)
....|+|++|+..+++++.. .|+++ ..+.++|.+|..+|+|++|+.++++++.+ .|++ ...+.+
T Consensus 308 ~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 308 AKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp HTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 34568999999999999985 45555 46789999999999999999999999975 3444 457899
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhc-----CCCCHHHH
Q 039523 90 IACLHMIKNKSKEAFIAFKEALKL-----KRNGWQLW 121 (244)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~ 121 (244)
+|.+|..+|++++|+..+++++.+ .|+++.+.
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999999999886 46665543
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.85 E-value=1.5e-08 Score=82.13 Aligned_cols=103 Identities=11% Similarity=0.048 Sum_probs=62.7
Q ss_pred HHHccCHHHHHHHHHHHHhc-----CCCcH---HHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCC---CHHHHHH
Q 039523 60 ALKARDVEKALDVFTRAVQL-----DPENG---EAWNIIACLHMIKNKSKEAFIAFKEALKL-----KRN---GWQLWEN 123 (244)
Q Consensus 60 ~~~~g~~~~A~~~~~~a~~~-----~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~p~---~~~~~~~ 123 (244)
+...|++++|+..+++++.+ .|+++ ..+.++|.+|..+|+|++|+.++++++.+ .|+ ....+.+
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 34556667777777666654 23333 45666667777777777777777766654 223 3445667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh-----cCCchhhHHHHHHHH
Q 039523 124 YSHVALDVGNIGQALEAVQMVLNI-----TNNKRIDTELLERIV 162 (244)
Q Consensus 124 la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~ 162 (244)
+|.+|..+|++++|+.++++++++ .|+++.....+..+.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~ 420 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLE 420 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 777777777777777777777654 355555555444443
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.85 E-value=4.2e-08 Score=79.53 Aligned_cols=101 Identities=12% Similarity=0.003 Sum_probs=83.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCh---hHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCcH---
Q 039523 21 SLARSAYNRGEYETSKILREAAMAL-----NSLYP---DGWFALGAAALKARDVEKALDVFTRAVQL-----DPENG--- 84 (244)
Q Consensus 21 ~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p~~~--- 84 (244)
.....+..+|++++|+..+++++.. .|+++ ..+.++|.+|..+|+|++|+.++++++.+ .|+++
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 3345566789999999999999975 34554 56889999999999999999999999975 34444
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCCHHHH
Q 039523 85 EAWNIIACLHMIKNKSKEAFIAFKEALKL-----KRNGWQLW 121 (244)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~ 121 (244)
..++++|.++..+|++++|+.++++++++ .|+++.+.
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 56899999999999999999999999876 56665543
No 220
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.66 E-value=5.4e-07 Score=59.31 Aligned_cols=94 Identities=12% Similarity=0.009 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 039523 67 EKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKE---AFIAFKEALKLK-R-NGWQLWENYSHVALDVGNIGQALEAV 141 (244)
Q Consensus 67 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~---A~~~~~~a~~~~-p-~~~~~~~~la~~~~~~~~~~~A~~~~ 141 (244)
..+.+.|.+....++.+..+.+++|+++.+..+..+ ++..++..+... | ....+++.+|..+.+.|+|..|+.++
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344444444444444555555555555555444433 555555555444 3 33455555555555666666666666
Q ss_pred HHHHhhcCCchhhHHHHHH
Q 039523 142 QMVLNITNNKRIDTELLER 160 (244)
Q Consensus 142 ~~al~~~p~~~~~~~~l~~ 160 (244)
+..++..|++.-+......
T Consensus 98 ~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 98 RGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp HHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHH
Confidence 6666555554444333333
No 221
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.64 E-value=2.1e-06 Score=57.82 Aligned_cols=120 Identities=18% Similarity=0.173 Sum_probs=85.1
Q ss_pred hCCCChhHHHHHHHHHHHccCH------HHHHHHHHHHHhcCCCc--------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 039523 45 LNSLYPDGWFALGAAALKARDV------EKALDVFTRAVQLDPEN--------GEAWNIIACLHMIKNKSKEAFIAFKEA 110 (244)
Q Consensus 45 ~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~a~~~~p~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~a 110 (244)
+.|.+++.|..+.......|+. ++-.+.|++++..-|.. ...|...+.. ...++.+.|...|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 3455555555555555555555 55555666665544421 2345566644 4558899999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccc
Q 039523 111 LKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLEGR 168 (244)
Q Consensus 111 ~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 168 (244)
+......+.+|...|.....+|+...|...+.+++.+.|. ....++...+++...
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k---~~~~le~a~~nl~~~ 141 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV---PLEMLEIALRNLNLQ 141 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB---CHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC---cHHHHHHHHHhhhcC
Confidence 8887778899999999999999999999999999998887 566777777776643
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.64 E-value=9e-07 Score=58.25 Aligned_cols=98 Identities=10% Similarity=0.009 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHH---HHHHHHHHHhcC-C-CcHHHHHHHHHHHHHcCChHHHH
Q 039523 30 GEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEK---ALDVFTRAVQLD-P-ENGEAWNIIACLHMIKNKSKEAF 104 (244)
Q Consensus 30 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~a~~~~-p-~~~~~~~~l~~~~~~~~~~~~A~ 104 (244)
.....+...|.+.+..++.+..+.+.+|.++.+.++... ++..++..++.+ | ...++++.+|..+++.|+|++|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 345566777888888788889999999999999887766 999999998877 5 56788999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHH
Q 039523 105 IAFKEALKLKRNGWQLWENYSHV 127 (244)
Q Consensus 105 ~~~~~a~~~~p~~~~~~~~la~~ 127 (244)
.+++..++..|++..+......+
T Consensus 95 ~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999998776555443
No 223
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.57 E-value=2.1e-06 Score=57.80 Aligned_cols=111 Identities=9% Similarity=-0.082 Sum_probs=95.3
Q ss_pred hhccCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhhCCCC--------hhHHHHHHHHHHHccCHHHHHHHHHH
Q 039523 10 KFQMISQLELRSLARSAYNRGEY------ETSKILREAAMALNSLY--------PDGWFALGAAALKARDVEKALDVFTR 75 (244)
Q Consensus 10 ~~~p~~~~~~~~la~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~ 75 (244)
-+.|++++.|..........|+. ++-++.|++++..-|.. ...|..+|.. ...++.++|.+.|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 35799999999999999999999 99999999999987743 3466677755 566999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHH
Q 039523 76 AVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLW 121 (244)
Q Consensus 76 a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 121 (244)
+++.....+.+|...|....++|+...|.+.+.+++.+.|.....+
T Consensus 86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 9988888899999999999999999999999999999999876543
No 224
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.55 E-value=1.6e-05 Score=65.72 Aligned_cols=119 Identities=9% Similarity=-0.008 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHH------------------
Q 039523 32 YETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACL------------------ 93 (244)
Q Consensus 32 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~------------------ 93 (244)
.......|++++...|..+.+|..++..+...|+.++|...|++++.. |.+...|+..+..
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~ 273 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGE 273 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhc
Confidence 355678999999999999999999999999999999999999999999 9886655544332
Q ss_pred ----------------------HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcCC
Q 039523 94 ----------------------HMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG-NIGQALEAVQMVLNITNN 150 (244)
Q Consensus 94 ----------------------~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~ 150 (244)
..+.+..+.|...|+++ ...+....+|...|.+....+ +.+.|...|+.+++..|+
T Consensus 274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~ 352 (493)
T 2uy1_A 274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD 352 (493)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence 22456678888999988 443345667777777766666 699999999999998887
Q ss_pred ch
Q 039523 151 KR 152 (244)
Q Consensus 151 ~~ 152 (244)
.+
T Consensus 353 ~~ 354 (493)
T 2uy1_A 353 ST 354 (493)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 225
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.47 E-value=5e-05 Score=62.83 Aligned_cols=150 Identities=9% Similarity=0.014 Sum_probs=118.0
Q ss_pred CchHHHHHHhhc-cCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHccCHHHH
Q 039523 1 MMPAMKKLWKFQ-MISQLELRSLARSAYNRG---------EYETSKILREAAMALN-SLYPDGWFALGAAALKARDVEKA 69 (244)
Q Consensus 1 Ai~~~~~al~~~-p~~~~~~~~la~~~~~~~---------~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A 69 (244)
|+++|+++.+.. +-+...|..+-..+...+ ..++|...|.+..... +-+...+..+...+.+.|++++|
T Consensus 45 A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A 124 (501)
T 4g26_A 45 ALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMA 124 (501)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 456777776652 225666766666665443 3788999999887754 22778899999999999999999
Q ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 70 LDVFTRAVQLD-PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK-RNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 70 ~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
.+++++..+.. .-+...|..+-..+.+.|+.++|.+.|++..+.. ..+...+..+..++.+.|+.++|...+++..+.
T Consensus 125 ~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 125 FDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 99999988753 2367788889999999999999999999987753 225778999999999999999999999988664
Q ss_pred --cCC
Q 039523 148 --TNN 150 (244)
Q Consensus 148 --~p~ 150 (244)
.|+
T Consensus 205 g~~ps 209 (501)
T 4g26_A 205 VRQVS 209 (501)
T ss_dssp TSSBC
T ss_pred CCCcC
Confidence 454
No 226
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.18 E-value=3.9e-05 Score=52.78 Aligned_cols=114 Identities=9% Similarity=0.066 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---------hHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCcHH
Q 039523 18 ELRSLARSAYNRGEYETSKILREAAMALNSLYP---------DGWFALGAAALKARDVEKALDVFTRAVQLD---PENGE 85 (244)
Q Consensus 18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~ 85 (244)
+++.-...++..|.|+.|+-....++....+++ .++..+|.+++..|+|..|...|+++++.. +..+.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 456667788899999999999888776643333 377889999999999999999999987642 22221
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039523 86 AWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQM 143 (244)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 143 (244)
....++. ...+.. ... .+.+.++.+.++.|+..+|++++|+..++.
T Consensus 102 ~~~~~~~----~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 102 VRPSTGN----SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp --------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ccccccc----cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 1100100 000000 011 123455666667777777777776666554
No 227
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.04 E-value=0.00012 Score=48.32 Aligned_cols=82 Identities=9% Similarity=-0.034 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHH
Q 039523 83 NGEAWNIIACLHMIKNKS---KEAFIAFKEALKLKR-NGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELL 158 (244)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~---~~A~~~~~~a~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 158 (244)
++.+.+++|+++.+..+. ..++..++..++..| ...++++.+|..+.+.|+|+.|+.+.+..+++.|++.-+...-
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 445556666666555443 345666666666555 2355666666666666666666666666666666655444444
Q ss_pred HHHHHH
Q 039523 159 ERIVLN 164 (244)
Q Consensus 159 ~~~~~~ 164 (244)
..+...
T Consensus 119 ~~Ie~k 124 (134)
T 3o48_A 119 SMVEDK 124 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 443333
No 228
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.04 E-value=0.0011 Score=54.83 Aligned_cols=133 Identities=14% Similarity=0.099 Sum_probs=106.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHcc---------CHHHHHHHHHHHHhcC-CCcHHH
Q 039523 18 ELRSLARSAYNRGEYETSKILREAAMALN-SLYPDGWFALGAAALKAR---------DVEKALDVFTRAVQLD-PENGEA 86 (244)
Q Consensus 18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~a~~~~-p~~~~~ 86 (244)
.+..+-..+.+.|+.++|+..|++..+.. +-+...|..+..++...+ ..++|.+.|++..... +-+...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 34555677889999999999999998764 226667777777766544 4789999999887653 236778
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--cCC
Q 039523 87 WNIIACLHMIKNKSKEAFIAFKEALKLK-RNGWQLWENYSHVALDVGNIGQALEAVQMVLNI--TNN 150 (244)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~ 150 (244)
|..+...+.+.|++++|...+++..+.. ..+...|..+...|...|+.++|...|++..+. .|+
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd 174 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE 174 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence 8899999999999999999999887652 236788899999999999999999999998764 455
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.03 E-value=0.0002 Score=47.90 Aligned_cols=86 Identities=8% Similarity=-0.014 Sum_probs=66.8
Q ss_pred CCcHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHH
Q 039523 81 PENGEAWNIIACLHMIKNKS---KEAFIAFKEALKLKR-NGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTE 156 (244)
Q Consensus 81 p~~~~~~~~l~~~~~~~~~~---~~A~~~~~~a~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 156 (244)
.-++.+.+++|+++.+..+. ..++..++..+...| ...++++.+|..+.++|+|.+|+.+.+..++..|++.-+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45677888888888877664 467888888888777 45778888899999999999999999999999998776666
Q ss_pred HHHHHHHHhc
Q 039523 157 LLERIVLNLE 166 (244)
Q Consensus 157 ~l~~~~~~~~ 166 (244)
.-..+...+.
T Consensus 116 Lk~~Ie~~i~ 125 (144)
T 1y8m_A 116 LKSMVEDKIQ 125 (144)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6665555554
No 230
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.02 E-value=0.00044 Score=46.24 Aligned_cols=81 Identities=15% Similarity=0.044 Sum_probs=65.4
Q ss_pred CCChhHHHHHHHHHHHccCH---HHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHH
Q 039523 47 SLYPDGWFALGAAALKARDV---EKALDVFTRAVQLDP-ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWE 122 (244)
Q Consensus 47 p~~~~~~~~la~~~~~~g~~---~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 122 (244)
..++.+.+++|.++.+..+. .+++..++..++.+| ...+.++.+|..+++.|+|++|..+.+..++..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 34778888899998888764 478888888888888 46678888999999999999999999999999999877655
Q ss_pred HHHHH
Q 039523 123 NYSHV 127 (244)
Q Consensus 123 ~la~~ 127 (244)
....+
T Consensus 116 Lk~~I 120 (144)
T 1y8m_A 116 LKSMV 120 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 231
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.01 E-value=0.00015 Score=47.92 Aligned_cols=79 Identities=15% Similarity=0.044 Sum_probs=61.6
Q ss_pred ChhHHHHHHHHHHHccCH---HHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 039523 49 YPDGWFALGAAALKARDV---EKALDVFTRAVQLDP-ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENY 124 (244)
Q Consensus 49 ~~~~~~~la~~~~~~g~~---~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 124 (244)
++.+.+.+|.++.+..+. .+++..++..++.+| ...+.++.+|..+.+.|+|+.|..+.+.+++..|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 667788888888887654 468888888888777 4567888888888888888888888888888888887765554
Q ss_pred HHH
Q 039523 125 SHV 127 (244)
Q Consensus 125 a~~ 127 (244)
..+
T Consensus 119 ~~I 121 (134)
T 3o48_A 119 SMV 121 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 232
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.93 E-value=9.8e-05 Score=50.81 Aligned_cols=64 Identities=11% Similarity=-0.074 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH---------HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039523 50 PDGWFALGAAALKARDVEKALDVFTRAVQLDPENG---------EAWNIIACLHMIKNKSKEAFIAFKEALKL 113 (244)
Q Consensus 50 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 113 (244)
..++..-...+...|.|+.|+-....++....+++ .++..+|.+++..|+|..|...|+++++.
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 34566667778888999999998888766543332 36788899999999999999999998765
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.77 E-value=0.00053 Score=59.06 Aligned_cols=116 Identities=9% Similarity=0.140 Sum_probs=86.1
Q ss_pred hcCC-HHHHHHHHHHHHhhCCCChhHHHHHHHHHH--Hc-cCHHHHHHHHHHHHhc--------CCCc----------HH
Q 039523 28 NRGE-YETSKILREAAMALNSLYPDGWFALGAAAL--KA-RDVEKALDVFTRAVQL--------DPEN----------GE 85 (244)
Q Consensus 28 ~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~-g~~~~A~~~~~~a~~~--------~p~~----------~~ 85 (244)
..++ ++.|+..+++....+|.... .+..+.+.. .. .+--+|+..+.+.++. .+.+ ..
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 338 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD 338 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence 3455 68899999999999996543 332333222 22 2345677777776632 2222 23
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039523 86 AWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMV 144 (244)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 144 (244)
.+...+..+..+|+++-|+++.++++...|.....|+.|+.+|..+|+|+.|+-.+..+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 45556778889999999999999999999999999999999999999999999776655
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.0016 Score=56.14 Aligned_cols=108 Identities=19% Similarity=0.114 Sum_probs=77.8
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhh--------CCCC----------hhHHHHHHHHH
Q 039523 2 MPAMKKLWKFQMISQLELRSLARSAY---NRGEYETSKILREAAMAL--------NSLY----------PDGWFALGAAA 60 (244)
Q Consensus 2 i~~~~~al~~~p~~~~~~~~la~~~~---~~~~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~ 60 (244)
+..+++..+.+|.....+ ..+.+.. ...+--+|+....+.++. .+.+ ...+..-+..+
T Consensus 269 ~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FL 347 (754)
T 4gns_B 269 IDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFL 347 (754)
T ss_dssp HHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHH
Confidence 456777777777654322 2222222 123455677777777642 2222 22455567788
Q ss_pred HHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 039523 61 LKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEA 110 (244)
Q Consensus 61 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 110 (244)
+..|+++-|+++.++++...|.....|+.|+.+|..+|+|+.|+-.+..+
T Consensus 348 l~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 348 LNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 89999999999999999999999999999999999999999999777654
No 235
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=97.11 E-value=0.026 Score=39.01 Aligned_cols=115 Identities=11% Similarity=0.042 Sum_probs=82.4
Q ss_pred hcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 039523 28 NRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAF 107 (244)
Q Consensus 28 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 107 (244)
+-.+|+.++-.-.- +.|..+.....++.++.-.|++..|+-.+.+ -+...+.+.-+.|+.+.++|..|+.++
T Consensus 14 kY~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~l 85 (242)
T 3kae_A 14 RYRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSL 85 (242)
T ss_dssp HTTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566665433222 2344456667788888889999988876643 345667777888999999999999999
Q ss_pred HHHHh--c---------------CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 108 KEALK--L---------------KRNGWQ-LWENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 108 ~~a~~--~---------------~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
++.+. . +|.+-+ .+..+|.++...|+.++|+.++.....+.|-
T Consensus 86 e~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 86 ESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp HHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 98883 2 233333 4566799999999999999999999988875
No 236
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=97.09 E-value=0.0074 Score=49.65 Aligned_cols=80 Identities=14% Similarity=-0.012 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039523 17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI 96 (244)
Q Consensus 17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 96 (244)
..+..+|........+..|..+|.+|....|++...+..+|.+....|+.-+|+-+|.+++......+.+..++...+.+
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 35667888888888899999999999999999999999999999999999999998888888776677777777666643
No 237
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=97.04 E-value=0.045 Score=40.86 Aligned_cols=121 Identities=14% Similarity=0.038 Sum_probs=85.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHH
Q 039523 24 RSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEA 103 (244)
Q Consensus 24 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A 103 (244)
...++.|+.++|+......++.+|.+......+...+.-.|+++.|.+.++.+.+++|.....-..+..+. .|
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI-------~a 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV-------KA 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-------HH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-------HH
Confidence 34567899999999999999999999999999999999999999999999999999997654332211110 11
Q ss_pred HHHHHHHHhc--C------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523 104 FIAFKEALKL--K------RNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK 151 (244)
Q Consensus 104 ~~~~~~a~~~--~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 151 (244)
...=.+.+.- . |........-+......|+.++|...-.++++..|..
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 1111111111 1 1122333444666777899999999999999988773
No 238
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.05 Score=37.98 Aligned_cols=109 Identities=9% Similarity=-0.006 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 039523 15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLH 94 (244)
Q Consensus 15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 94 (244)
|++.-+.+ ....|+++.|.+..+.. ++...|..+|...+..|+++-|.++|.++-. +-.+..+|
T Consensus 7 D~~~rF~L---AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly 70 (177)
T 3mkq_B 7 DPHIRFDL---ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLY 70 (177)
T ss_dssp CHHHHHHH---HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHH
T ss_pred ChHHHHHH---HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHH
Confidence 34444444 35789999999887765 6788999999999999999999999988643 22333445
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039523 95 MIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMV 144 (244)
Q Consensus 95 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 144 (244)
.-.|+.+.-....+.+..... +.....++..+|+++++++.|.+.
T Consensus 71 ~~tg~~e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 556665444444333332221 122234455666777766666443
No 239
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.88 E-value=0.013 Score=48.18 Aligned_cols=79 Identities=20% Similarity=0.186 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 039523 52 GWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD 130 (244)
Q Consensus 52 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 130 (244)
.+..+|.+......++.|..+|.+|..+.|++...++.+|.+....|+.-+|+-+|-+++......+.+..++...+..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 4557788888888889999999999999999999999999999999999899999888888877778888888777654
No 240
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.84 E-value=0.06 Score=37.25 Aligned_cols=29 Identities=10% Similarity=0.105 Sum_probs=21.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 122 ENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 122 ~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
...+..+..+|-.++...+|....+.+|.
T Consensus 212 a~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 212 SNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 34566777888888888888888777774
No 241
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.79 E-value=0.045 Score=43.57 Aligned_cols=134 Identities=10% Similarity=-0.100 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------------------h---CCCCh------------------hHH--
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMA-------------------L---NSLYP------------------DGW-- 53 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~-------------------~---~p~~~------------------~~~-- 53 (244)
..+.+.+|..|...|+.++-.+++..... . -|+.. ..|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999988877766554321 1 12221 112
Q ss_pred ----HHHHHHHHHccCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCC---
Q 039523 54 ----FALGAAALKARDVEKALDVFTRAVQLDPE------NGEAWNIIACLHMIKNKSKEAFIAFKEALKLK---RNG--- 117 (244)
Q Consensus 54 ----~~la~~~~~~g~~~~A~~~~~~a~~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---p~~--- 117 (244)
..+|..|+..|+|.+|.+.+.+..+.... -.+++..-..++...+++.++...+.++.... +.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 27899999999999999999888764221 23566777888999999999999998886552 122
Q ss_pred -HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhcC
Q 039523 118 -WQLWENYSHVAL-DVGNIGQALEAVQMVLNITN 149 (244)
Q Consensus 118 -~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p 149 (244)
+.....-|..+. ..++|..|...|-++++-..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 234455688888 89999999999998876543
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.76 E-value=0.057 Score=43.05 Aligned_cols=86 Identities=14% Similarity=0.016 Sum_probs=66.5
Q ss_pred HHccCHHHHHHHHHHHHhcCCCc--------H--------------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH
Q 039523 61 LKARDVEKALDVFTRAVQLDPEN--------G--------------EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGW 118 (244)
Q Consensus 61 ~~~g~~~~A~~~~~~a~~~~p~~--------~--------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 118 (244)
...|+.+.|...+.+++.+.... . .+...++..+...|++.+++..+..++..+|-+-
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E 205 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYRE 205 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 34577778888888887764211 0 2334456677889999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523 119 QLWENYSHVALDVGNIGQALEAVQMVLN 146 (244)
Q Consensus 119 ~~~~~la~~~~~~~~~~~A~~~~~~al~ 146 (244)
.++..+..++...|+..+|+..|+++.+
T Consensus 206 ~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 206 PLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999988887644
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.74 E-value=0.055 Score=43.12 Aligned_cols=91 Identities=12% Similarity=0.099 Sum_probs=75.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCC--------h--------------hHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 039523 22 LARSAYNRGEYETSKILREAAMALNSLY--------P--------------DGWFALGAAALKARDVEKALDVFTRAVQL 79 (244)
Q Consensus 22 la~~~~~~~~~~~A~~~~~~al~~~p~~--------~--------------~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 79 (244)
.|......|+.+.|...+++++.+.... . .+...++..+...|++.+++..+..++..
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~ 200 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE 200 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3444456789999999999999875221 1 13346677788999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 039523 80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALK 112 (244)
Q Consensus 80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 112 (244)
+|.+-.+|..+-.++...|+..+|+..|+++.+
T Consensus 201 ~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 201 HPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999987644
No 244
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.69 E-value=0.11 Score=45.21 Aligned_cols=127 Identities=20% Similarity=0.151 Sum_probs=91.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHH
Q 039523 24 RSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL--------DPENGEAWNIIACLHM 95 (244)
Q Consensus 24 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~ 95 (244)
......|+++.|.+..+ ..++...|..+|..+.+.|+++.|+++|.++-.. ...+...+..++....
T Consensus 660 ~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 34567899999988754 3457889999999999999999999999976322 2566777888899999
Q ss_pred HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523 96 IKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE 166 (244)
Q Consensus 96 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 166 (244)
..|++..|...|.+. .+ ......+|...+++++|...-++ ..|........+......+.
T Consensus 735 ~~~~~~~A~~~~~~~-----g~---~~~a~~~~~~~~~~~~A~~lA~~---~~~~~~~i~~~~~~~~~~L~ 794 (814)
T 3mkq_A 735 TTGKFNLAFNAYWIA-----GD---IQGAKDLLIKSQRFSEAAFLGST---YGLGDNEVNDIVTKWKENLI 794 (814)
T ss_dssp HTTCHHHHHHHHHHH-----TC---HHHHHHHHHHTTCHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHH
T ss_pred HcCchHHHHHHHHHc-----CC---HHHHHHHHHHcCChHHHHHHHHH---hCCChHHHHHHHHHHHHHHH
Confidence 999999998887652 11 23456778999999999887654 44543112334444444443
No 245
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.63 E-value=0.3 Score=43.74 Aligned_cols=119 Identities=7% Similarity=-0.061 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCHHHHHHHH
Q 039523 51 DGWFALGAAALKARDVEKALDVFTRAVQL----DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK-RNGWQLWENYS 125 (244)
Q Consensus 51 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~la 125 (244)
..+..+...+.+.|+.++|...+....+. ..-+...|..+...+.+.|+.++|.+.|++..... ..+...|..+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 35788899999999999999999765432 23467789999999999999999999999887652 23577788888
Q ss_pred HHHHHcCCH-HHHHHHHHHHHhh--cCCc-----hhhHHHHHHHHHHhcccc
Q 039523 126 HVALDVGNI-GQALEAVQMVLNI--TNNK-----RIDTELLERIVLNLEGRT 169 (244)
Q Consensus 126 ~~~~~~~~~-~~A~~~~~~al~~--~p~~-----~~~~~~l~~~~~~~~~~~ 169 (244)
.++.+.|+. ++|...+++..+. .|+. .........++..+.+..
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~ 259 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVK 259 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhC
Confidence 888888874 7888999888765 3541 123333445555555443
No 246
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.46 E-value=0.043 Score=47.76 Aligned_cols=107 Identities=24% Similarity=0.226 Sum_probs=75.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 039523 19 LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKN 98 (244)
Q Consensus 19 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 98 (244)
...+...+...|.++.|+...+ ++...+ ......|++++|.+..+ ..+++..|..+|..+...|
T Consensus 632 ~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 632 LTKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcC
Confidence 3566677778888888876542 333223 34578899999999764 3467899999999999999
Q ss_pred ChHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 039523 99 KSKEAFIAFKEALKL--------KRNGWQLWENYSHVALDVGNIGQALEAV 141 (244)
Q Consensus 99 ~~~~A~~~~~~a~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~ 141 (244)
+++.|..+|.++-.. ...+...+..++......|+++.|..+|
T Consensus 696 ~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~ 746 (814)
T 3mkq_A 696 NFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAY 746 (814)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 999999999875221 2345555566666666666666655444
No 247
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.43 E-value=0.14 Score=45.70 Aligned_cols=97 Identities=5% Similarity=-0.101 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCcHHHHHHH
Q 039523 17 LELRSLARSAYNRGEYETSKILREAAMA-----LNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD-PENGEAWNII 90 (244)
Q Consensus 17 ~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l 90 (244)
..+..+-..+.+.|+.++|...+.+.-+ ..| +...|..+...+.+.|++++|.++|++..... .-+...|..+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4578888999999999999999977543 344 78899999999999999999999999987643 2366778888
Q ss_pred HHHHHHcCCh-HHHHHHHHHHHhcC
Q 039523 91 ACLHMIKNKS-KEAFIAFKEALKLK 114 (244)
Q Consensus 91 ~~~~~~~~~~-~~A~~~~~~a~~~~ 114 (244)
..++.+.|+. ++|.+++++.....
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 8899999985 78889999887763
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=96.19 E-value=0.13 Score=47.08 Aligned_cols=118 Identities=13% Similarity=0.017 Sum_probs=82.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC---------------------
Q 039523 22 LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD--------------------- 80 (244)
Q Consensus 22 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------------------- 80 (244)
+...+...+.++-+.. .+...|.++...+.+|.++...|++++|..+|.++-..-
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 4444555566655443 445667777777888999999999999999888763211
Q ss_pred --CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHH
Q 039523 81 --PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN-GW----QLWENYSHVALDVGNIGQALEAVQM 143 (244)
Q Consensus 81 --p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~----~~~~~la~~~~~~~~~~~A~~~~~~ 143 (244)
...+..|..+..++.+.|.++.+++..+.|++..+. +. ..|.++-..+...|+|++|...+..
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 112345666777888888899999888888877543 32 2577777888888999988766643
No 249
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.018 Score=47.27 Aligned_cols=128 Identities=11% Similarity=0.051 Sum_probs=59.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh-----------hCCCChhHHHHHHHHHHHccCHHHHH----------HHHHHHH----
Q 039523 23 ARSAYNRGEYETSKILREAAMA-----------LNSLYPDGWFALGAAALKARDVEKAL----------DVFTRAV---- 77 (244)
Q Consensus 23 a~~~~~~~~~~~A~~~~~~al~-----------~~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~a~---- 77 (244)
-..++..+++++|..+-...+. +++-...+|+.++.++...|+..... ..+..++
T Consensus 143 ~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~ 222 (523)
T 4b4t_S 143 QLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIAS 222 (523)
T ss_dssp ------------------------------------------------------------CHHHHHHHHTHHHHHHHHCC
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Confidence 3345678889998887765541 23445678888888888888765532 1222222
Q ss_pred -hcCCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523 78 -QLDPEN-GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG-------WQLWENYSHVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 78 -~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
..++.. ...+..+-..|...+.+++|..+..++. .|.. ...++.+|.++..+++|.+|.+++..|++..
T Consensus 223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 233332 4456667788999999999999999885 3321 4567788999999999999999999999988
Q ss_pred CCch
Q 039523 149 NNKR 152 (244)
Q Consensus 149 p~~~ 152 (244)
|...
T Consensus 301 p~~~ 304 (523)
T 4b4t_S 301 PHNS 304 (523)
T ss_dssp SCSS
T ss_pred Ccch
Confidence 8643
No 250
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.094 Score=36.61 Aligned_cols=92 Identities=15% Similarity=0.168 Sum_probs=63.7
Q ss_pred HHHHHhh--ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 039523 5 MKKLWKF--QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPE 82 (244)
Q Consensus 5 ~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 82 (244)
|+.|+++ .-++...|..+|......|+++-|..+|.++-. +..+..+|.-.|+.++-.+.-+.+.....
T Consensus 21 l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kla~iA~~~g~- 91 (177)
T 3mkq_B 21 LDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKMQNIAQTRED- 91 (177)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHHHHHHHHCcc-
Confidence 4445444 336788999999999999999999999998632 23456677778887765555554443332
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHH
Q 039523 83 NGEAWNIIACLHMIKNKSKEAFIAFKE 109 (244)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~ 109 (244)
+.....++...|+++++++.|.+
T Consensus 92 ----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 92 ----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp ----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 22334567788888888877654
No 251
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.16 E-value=0.053 Score=40.48 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=52.4
Q ss_pred HHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH
Q 039523 59 AALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQ 119 (244)
Q Consensus 59 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 119 (244)
..++.|+.++|++.+...++.+|.+......+..+++-.|+++.|.+.++.+.+++|....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 4567888899999999999999999998888889999999999999999888888887643
No 252
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.96 E-value=0.11 Score=41.39 Aligned_cols=114 Identities=14% Similarity=-0.015 Sum_probs=81.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCC--C----hhHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCcH----HH
Q 039523 20 RSLARSAYNRGEYETSKILREAAMALNSL--Y----PDGWFALGAAALKARDVEKALDVFTRAVQLD---PENG----EA 86 (244)
Q Consensus 20 ~~la~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~----~~ 86 (244)
..+|..|+..|+|.+|...+.+..+.... + ..++..-..+|...|++.++...+.++.... +.+| ..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 37899999999999999999988875322 2 2456667788999999999999999886542 2233 34
Q ss_pred HHHHHHHHH-HcCChHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCC
Q 039523 87 WNIIACLHM-IKNKSKEAFIAFKEALKLKRNG-----WQLWENYSHVALDVGN 133 (244)
Q Consensus 87 ~~~l~~~~~-~~~~~~~A~~~~~~a~~~~p~~-----~~~~~~la~~~~~~~~ 133 (244)
...-|..+. ..++|..|...|-+++...... ..+...++.|....++
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 455678888 8999999999998887543221 2344455555555555
No 253
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.037 Score=44.74 Aligned_cols=100 Identities=16% Similarity=0.165 Sum_probs=76.3
Q ss_pred ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCH----H
Q 039523 49 YPDGWFALGAAALKARDVEKALDVFTRAVQLDP---ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK--RNGW----Q 119 (244)
Q Consensus 49 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~----~ 119 (244)
-..++..+|..+.+.|++++|.++|.++..... ...+.++....++...+++..+...+.++.... ..++ .
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 345778899999999999999999998876533 345778888888999999999999998886542 1222 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523 120 LWENYSHVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 120 ~~~~la~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
.....|.++...++|..|...|-.++...
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 34455777788899999999888877654
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.79 E-value=0.23 Score=45.37 Aligned_cols=124 Identities=10% Similarity=-0.055 Sum_probs=87.9
Q ss_pred HHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----------------------CCChhHHHHHHHHHHHcc
Q 039523 8 LWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALN-----------------------SLYPDGWFALGAAALKAR 64 (244)
Q Consensus 8 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----------------------p~~~~~~~~la~~~~~~g 64 (244)
.+..-|.++..-+.+|.++...|++++|..+|+++-..- ...+..+..+..++.+.|
T Consensus 834 l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~ 913 (1139)
T 4fhn_B 834 LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES 913 (1139)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTS
T ss_pred HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcC
Confidence 344467788888999999999999999999998873211 111245677888888999
Q ss_pred CHHHHHHHHHHHHhcCC-CcH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 039523 65 DVEKALDVFTRAVQLDP-ENG----EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG 132 (244)
Q Consensus 65 ~~~~A~~~~~~a~~~~p-~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~ 132 (244)
.++.+++....|++..+ ++. ..|.++-..+...|+|++|...+...-... ....++..+.......|
T Consensus 914 ~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~-~r~~cLr~LV~~lce~~ 985 (1139)
T 4fhn_B 914 AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP-LKKSCLLDFVNQLTKQG 985 (1139)
T ss_dssp CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS-SCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH-HHHHHHHHHHHHHHhCC
Confidence 99999999999998654 332 267788888999999999988775432221 22444555544444333
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.099 Score=42.27 Aligned_cols=100 Identities=9% Similarity=-0.049 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCcHH----H
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSL---YPDGWFALGAAALKARDVEKALDVFTRAVQLD--PENGE----A 86 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~----~ 86 (244)
..++..+|..|...|+++.|.+.|.++...... -...+.....++...+++..+...+.++.... ..++. .
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 457889999999999999999999999876433 34678888899999999999999999986542 22222 3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 039523 87 WNIIACLHMIKNKSKEAFIAFKEALKLKR 115 (244)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 115 (244)
....|.++...++|..|...|..++....
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 44557778889999999999988876543
No 256
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.24 E-value=0.56 Score=38.06 Aligned_cols=98 Identities=10% Similarity=0.066 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CC----hhHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCCcH--
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNS--LY----PDGWFALGAAALKARDVEKALDVFTRAVQ---LDPENG-- 84 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~-- 84 (244)
++....|+..+...|++.+|...+.......- .+ ..++.....++...+++.+|...+.++.. ..+..+
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l 216 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence 45667899999999999999999988764321 11 34677788889999999999999988642 233333
Q ss_pred --HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039523 85 --EAWNIIACLHMIKNKSKEAFIAFKEALKL 113 (244)
Q Consensus 85 --~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 113 (244)
..+...|.++...++|.+|..+|..+...
T Consensus 217 k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 217 KLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 35667788999999999999999888764
No 257
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.87 E-value=0.67 Score=39.29 Aligned_cols=125 Identities=8% Similarity=0.005 Sum_probs=85.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCChh----HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039523 21 SLARSAYNRGEYETSKILREAAMALNSLYPD----GWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI 96 (244)
Q Consensus 21 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 96 (244)
..+.......+.+.|...+.......+-+.. .+..++.-....+...++...+.+.....+++.......+ ...+
T Consensus 219 ~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r-~Alr 297 (618)
T 1qsa_A 219 AVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALG 297 (618)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHH-HHHH
Confidence 3455555566889999988887654443332 2223333334445356777777776655544444434444 4456
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523 97 KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLN 146 (244)
Q Consensus 97 ~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 146 (244)
.|+++.|...+...-..........+.+|..+...|+.++|..+|+++..
T Consensus 298 ~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 298 TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 79999999999876554445678899999999999999999999999985
No 258
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.69 E-value=0.97 Score=36.66 Aligned_cols=96 Identities=11% Similarity=0.031 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC----C--CcHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCCH----
Q 039523 52 GWFALGAAALKARDVEKALDVFTRAVQLD----P--ENGEAWNIIACLHMIKNKSKEAFIAFKEALK---LKRNGW---- 118 (244)
Q Consensus 52 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~----p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~p~~~---- 118 (244)
....|+.++...|++.+|...+.....-. + .-..++.....++...+++..|...+.++.. ..+..+
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 34688999999999999999998875421 1 1245777888999999999999999988642 233333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 119 QLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 119 ~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
..+...|.++...++|.+|..+|..++..
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 45667789999999999999999998864
No 259
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.69 E-value=0.48 Score=39.03 Aligned_cols=104 Identities=10% Similarity=0.001 Sum_probs=58.6
Q ss_pred ccCCHHHHHHHHHHHHhcCCHHHH----------HHHHHHHHhh-----CCC-ChhHHHHHHHHHHHccCHHHHHHHHHH
Q 039523 12 QMISQLELRSLARSAYNRGEYETS----------KILREAAMAL-----NSL-YPDGWFALGAAALKARDVEKALDVFTR 75 (244)
Q Consensus 12 ~p~~~~~~~~la~~~~~~~~~~~A----------~~~~~~al~~-----~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 75 (244)
|+-.+.+|+..+.++...|+.... +..+..+++. ++. ....+..+-..|...+.++.|..+..+
T Consensus 177 D~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk 256 (523)
T 4b4t_S 177 NLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISK 256 (523)
T ss_dssp --------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhc
Confidence 455677888888888877776542 2233333332 221 245677888899999999999999999
Q ss_pred HHhcCCCc-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523 76 AVQLDPEN-------GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG 117 (244)
Q Consensus 76 a~~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 117 (244)
+. .|.+ ...++.+|.++..+++|.+|.+++..|++..|.+
T Consensus 257 ~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 257 LE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred Cc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 85 3322 3456778999999999999999999999887643
No 260
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=92.80 E-value=2.7 Score=37.69 Aligned_cols=30 Identities=13% Similarity=0.009 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523 119 QLWENYSHVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 119 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
..|.....++...+-++-+++..+.|+...
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASK 927 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 356666777777777777777777777653
No 261
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=89.87 E-value=3.9 Score=29.05 Aligned_cols=66 Identities=8% Similarity=-0.023 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 039523 50 PDGWFALGAAALKARDVEKALDVFTRAVQ--LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN 116 (244)
Q Consensus 50 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 116 (244)
..+|..++..+ ..+...++.+.|.-+.. +.-..+..|...|..+...|++.+|...|+.+++..-.
T Consensus 80 LklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 80 LKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp HHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 34666666554 23445667777665554 45566777888888888888888888888888887543
No 262
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=88.25 E-value=3.5 Score=27.52 Aligned_cols=55 Identities=13% Similarity=0.004 Sum_probs=36.5
Q ss_pred HHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039523 59 AALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL 113 (244)
Q Consensus 59 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 113 (244)
.....|+-++-.+.+...+.-++-++..++.+|.+|.+.|+..+|-+.+.+|-+.
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3445666666666666655656666777777777777777777777777776654
No 263
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=86.82 E-value=5.7 Score=27.13 Aligned_cols=76 Identities=11% Similarity=-0.007 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHH------HHHHHHHHHcCCHHHHHHHHHHHHhhc---CC--chh
Q 039523 88 NIIACLHMIKNKSKEAFIAFKEALKLKRNG---WQLW------ENYSHVALDVGNIGQALEAVQMVLNIT---NN--KRI 153 (244)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~------~~la~~~~~~~~~~~A~~~~~~al~~~---p~--~~~ 153 (244)
+..+..++..|+|-+|.+.++.+....+.. ...| ...|......|+...|...+.+++..- |. ...
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~~~~GI 115 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPNDYYGV 115 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCTTGGGB
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCccCCc
Confidence 445666777788888888888888776543 2222 233445667899999999999998743 22 234
Q ss_pred hHHHHHHHHH
Q 039523 154 DTELLERIVL 163 (244)
Q Consensus 154 ~~~~l~~~~~ 163 (244)
+...+.....
T Consensus 116 Dv~~L~~~~~ 125 (161)
T 2ijq_A 116 DLLDVRTTVT 125 (161)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 5555444333
No 264
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=86.48 E-value=17 Score=32.59 Aligned_cols=88 Identities=11% Similarity=0.013 Sum_probs=47.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC-C-------------------
Q 039523 22 LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD-P------------------- 81 (244)
Q Consensus 22 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-p------------------- 81 (244)
+...+...|.++-+ ++.+...|.++..-+.+|.+++..|++++|..+|+++-..- .
T Consensus 816 l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 34444555555433 23445555566556666666666666666666666543210 0
Q ss_pred -C--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039523 82 -E--NGEAWNIIACLHMIKNKSKEAFIAFKEALKL 113 (244)
Q Consensus 82 -~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 113 (244)
. ....|.....++...+-++.++...+.|++.
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 0 0124445555566666666666666666653
No 265
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=84.86 E-value=3.9 Score=23.76 Aligned_cols=29 Identities=7% Similarity=0.195 Sum_probs=20.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 122 ENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 122 ~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
..+|..+...|++++|..+|-+|+...|+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 34566667777777777777777777766
No 266
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=84.84 E-value=17 Score=30.83 Aligned_cols=120 Identities=11% Similarity=-0.032 Sum_probs=78.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----------------C--
Q 039523 21 SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD-----------------P-- 81 (244)
Q Consensus 21 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----------------p-- 81 (244)
.++...++.|++..|...+.+.-..........+.+|.++...|+.++|...|.++.... |
T Consensus 290 ~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~ 369 (618)
T 1qsa_A 290 RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKID 369 (618)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCC
Confidence 334445567899998888876655434456677888888888999999988888765421 0
Q ss_pred -C----c----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 039523 82 -E----N----GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQ 142 (244)
Q Consensus 82 -~----~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 142 (244)
. . ...-...+..+...|....|...+....... +..-...++.+....|.+..++....
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 0 0 0112344566777888888887777766542 23444566777777777777665443
No 267
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=83.91 E-value=7.5 Score=25.96 Aligned_cols=120 Identities=12% Similarity=-0.007 Sum_probs=82.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCChhHH-----------HHHHHHHH---------HccCHHHHHHHHHHHHhcCCC
Q 039523 23 ARSAYNRGEYETSKILREAAMALNSLYPDGW-----------FALGAAAL---------KARDVEKALDVFTRAVQLDPE 82 (244)
Q Consensus 23 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------~~la~~~~---------~~g~~~~A~~~~~~a~~~~p~ 82 (244)
|.-+...|..++..+...+...-.+-...-| -.+-.++- .-|+...-+.+|-+.- ..
T Consensus 14 AK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n---~~ 90 (172)
T 1wy6_A 14 AKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN---TL 90 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT---CC
T ss_pred HHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhc---ch
Confidence 4555667888888888888877665322211 12223333 3466777777775532 22
Q ss_pred cHHHHHHHH-HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 83 NGEAWNIIA-CLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 83 ~~~~~~~l~-~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
+. +..+| ..+..+|+-++-.+.+...+.-.+-++..+..+|.+|.+.|+..+|-+.+.+|-+.
T Consensus 91 se--~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 91 NE--HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp CH--HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HH--HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 22 23333 45678888888888888766767778999999999999999999999999998765
No 268
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=82.51 E-value=5.3 Score=23.18 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=15.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 039523 21 SLARSAYNRGEYETSKILREAAMALNSL 48 (244)
Q Consensus 21 ~la~~~~~~~~~~~A~~~~~~al~~~p~ 48 (244)
.+|..+...|++++|...|-+|+...|.
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 4455555555555555555555555553
No 269
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=82.50 E-value=5.6 Score=27.26 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523 51 DGWFALGAAALKARDVEKALDVFTRAVQ--LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG 117 (244)
Q Consensus 51 ~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 117 (244)
.+|..++... ++ +.++|..+.. +.-..+..|...|..+...|++.+|.+.|+.+++.....
T Consensus 67 klWl~ya~~~---~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 67 NLWLKLGRLC---NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHC---SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4566666543 33 4455555443 455678888889999999999999999999999876543
No 270
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=81.14 E-value=6.5 Score=28.01 Aligned_cols=52 Identities=8% Similarity=-0.063 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh-----HHHHHHHHHHHccCHH
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPD-----GWFALGAAALKARDVE 67 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~ 67 (244)
....+.+|..++..++|.+|...+..|+...|.... ++..+.-+-+-.|++.
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 456789999999999999999999999999886643 2333444445566643
No 271
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=79.45 E-value=20 Score=27.81 Aligned_cols=25 Identities=16% Similarity=0.217 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 039523 18 ELRSLARSAYNRGEYETSKILREAA 42 (244)
Q Consensus 18 ~~~~la~~~~~~~~~~~A~~~~~~a 42 (244)
.+..++.=|...++|++|++.+...
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G 61 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV 61 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 3455566667777888887765444
No 272
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=78.96 E-value=7.8 Score=31.50 Aligned_cols=87 Identities=9% Similarity=-0.039 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHhcCCC--------c----HH----HHHHHHHHHHHcCChHHHHHHHHHHHhcCC--C--------CH
Q 039523 65 DVEKALDVFTRAVQLDPE--------N----GE----AWNIIACLHMIKNKSKEAFIAFKEALKLKR--N--------GW 118 (244)
Q Consensus 65 ~~~~A~~~~~~a~~~~p~--------~----~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~--------~~ 118 (244)
..+++...+.++....-+ + .. ....+-.+|++.|+...+...++..-...+ . -.
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 355666677776654211 1 11 223455789999999999888865433222 1 14
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-cCCc
Q 039523 119 QLWENYSHVALDVGNIGQALEAVQMVLNI-TNNK 151 (244)
Q Consensus 119 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~ 151 (244)
...+.+|..+...++|.+|..++..|++. .|..
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 66888999999999999999999999998 7764
No 273
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=78.45 E-value=20 Score=27.41 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 039523 19 LRSLARSAYNRGEYETSKILREAA 42 (244)
Q Consensus 19 ~~~la~~~~~~~~~~~A~~~~~~a 42 (244)
+..++.=|..++++++|++.+...
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g 59 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG 59 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH
Confidence 344455555566666666654443
No 274
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=78.27 E-value=7.4 Score=23.89 Aligned_cols=29 Identities=7% Similarity=0.195 Sum_probs=20.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523 122 ENYSHVALDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 122 ~~la~~~~~~~~~~~A~~~~~~al~~~p~ 150 (244)
..+|..+...|+++.|+.+|-+|+...|+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 34566677777777777777777777766
No 275
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=77.43 E-value=14 Score=25.13 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=13.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhC
Q 039523 21 SLARSAYNRGEYETSKILREAAMALN 46 (244)
Q Consensus 21 ~la~~~~~~~~~~~A~~~~~~al~~~ 46 (244)
.-|..++..|+|-+|-+.++..-...
T Consensus 37 ~~~i~lFn~g~yfeaHEvLEe~W~~~ 62 (161)
T 2ijq_A 37 VHGVRLYNSGEFHESHDCFEDEWYNY 62 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTTT
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHhc
Confidence 33444444555555555555554443
No 276
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=77.08 E-value=6.2 Score=23.98 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039523 16 QLELRSLARSAYNRGEYETSKILREAAM 43 (244)
Q Consensus 16 ~~~~~~la~~~~~~~~~~~A~~~~~~al 43 (244)
+..+-..+..+...|+|++||++.+++.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 4455567777778888888887766654
No 277
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=76.66 E-value=9 Score=31.14 Aligned_cols=64 Identities=13% Similarity=0.167 Sum_probs=45.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCC----------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCC
Q 039523 54 FALGAAALKARDVEKALDVFTRAVQLDP----------ENGEAWNIIACLHMIKNKSKEAFIAFKEALKL-KRNG 117 (244)
Q Consensus 54 ~~la~~~~~~g~~~~A~~~~~~a~~~~p----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~p~~ 117 (244)
..+-.+|++.|+..-|...+...-...+ .-....+.+|.++...++|.+|.+.+..|++. .|..
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 3555778888888888877765433221 11346778888888999999999998888887 5543
No 278
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=76.00 E-value=20 Score=25.95 Aligned_cols=128 Identities=11% Similarity=0.067 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhh--CCCC-hhHHHHHHHHHHH---ccC-H-HHHHHHHHHHHhcCCC------cH---HHHHHHHHHH
Q 039523 32 YETSKILREAAMAL--NSLY-PDGWFALGAAALK---ARD-V-EKALDVFTRAVQLDPE------NG---EAWNIIACLH 94 (244)
Q Consensus 32 ~~~A~~~~~~al~~--~p~~-~~~~~~la~~~~~---~g~-~-~~A~~~~~~a~~~~p~------~~---~~~~~l~~~~ 94 (244)
.+.....|+..+.. ..++ ...|.....-... .|. . ..=..+++++++...+ ++ .+|..++..
T Consensus 51 l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~- 129 (223)
T 4aez_C 51 LQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY- 129 (223)
T ss_dssp HHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc-
Confidence 34445556666653 2223 3455544433332 121 1 1123556666654332 22 344444442
Q ss_pred HHcCChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccc
Q 039523 95 MIKNKSKEAFIAFKEALKL--KRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLEGR 168 (244)
Q Consensus 95 ~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 168 (244)
.+++...|.-.... ....+..|...|..+...|++.+|...|+.+++.... -...|......+..+
T Consensus 130 -----~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~---P~~rL~~~~~~F~~R 197 (223)
T 4aez_C 130 -----IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK---PFLRFQQKYQQFTHR 197 (223)
T ss_dssp -----CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB---SHHHHHHHHHHHHHH
T ss_pred -----cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc---cHHHHHHHHHHHHHH
Confidence 24566666665544 4566888999999999999999999999999987654 455566655556555
No 279
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=75.50 E-value=6.6 Score=28.40 Aligned_cols=61 Identities=10% Similarity=0.170 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523 51 DGWFALGAAALKARDVEKALDVFTRAVQ--LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG 117 (244)
Q Consensus 51 ~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 117 (244)
.+|..++.. . +.+..+|..+.. +.-..+..|...|..+...|++.+|...|+.+++..-..
T Consensus 121 klWl~Ya~~---~---~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 121 RIWMQYVNY---I---DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp HHHHHHHTT---C---SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred HHHHHHHHc---c---CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 455555542 2 344455555443 455677888888999999999999999999999876543
No 280
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=75.25 E-value=19 Score=25.53 Aligned_cols=95 Identities=16% Similarity=0.120 Sum_probs=65.1
Q ss_pred HHHHHHHhcCC------Cc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 039523 71 DVFTRAVQLDP------EN---GEAWNIIACLHMIKNKSKEAFIAFKEALKL--KRNGWQLWENYSHVALDVGNIGQALE 139 (244)
Q Consensus 71 ~~~~~a~~~~p------~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~la~~~~~~~~~~~A~~ 139 (244)
..++++++... ++ ..+|..++..+ ..+...++...|.-.... ....+..|...|..+...|++.+|..
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 46666665422 23 34566665554 133356888888766554 45678889999999999999999999
Q ss_pred HHHHHHhhcCCchhhHHHHHHHHHHhcccc
Q 039523 140 AVQMVLNITNNKRIDTELLERIVLNLEGRT 169 (244)
Q Consensus 140 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 169 (244)
.|+.+++.... -...|......+..+.
T Consensus 137 Vy~~GI~~~A~---P~~rL~~~~~~F~~R~ 163 (202)
T 3esl_A 137 LLELGAENNCR---PYNRLLRSLSNYEDRL 163 (202)
T ss_dssp HHHHHHHTTCB---SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCc---cHHHHHHHHHHHHHHH
Confidence 99999987644 4555666555565554
No 281
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=74.22 E-value=7.5 Score=26.27 Aligned_cols=61 Identities=5% Similarity=-0.009 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523 51 DGWFALGAAALKARDVEKALDVFTRAVQ--LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG 117 (244)
Q Consensus 51 ~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 117 (244)
.+|..++... +++.+.|.-+.. +.-..+..|...|..+...|++.+|...|+.+++.....
T Consensus 72 klWl~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 72 SYCLKFAEYN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHTTB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHhc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4555555432 236666666554 445677888888999999999999999999999876544
No 282
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=73.99 E-value=10 Score=27.01 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHH-----HHHHHHHHHHcCCh
Q 039523 51 DGWFALGAAALKARDVEKALDVFTRAVQLDPENGEA-----WNIIACLHMIKNKS 100 (244)
Q Consensus 51 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~-----~~~l~~~~~~~~~~ 100 (244)
...+.+|..++..++|.+|.+.+..|+...|..... +..+.-+..-+|+.
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~i 69 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHM 69 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCC
Confidence 457789999999999999999999999998865432 22233334456664
No 283
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=72.52 E-value=7.9 Score=23.55 Aligned_cols=26 Identities=19% Similarity=0.115 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Q 039523 52 GWFALGAAALKARDVEKALDVFTRAV 77 (244)
Q Consensus 52 ~~~~la~~~~~~g~~~~A~~~~~~a~ 77 (244)
.+...+..+.+.|+|++|+++..++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 44566777777788888777766543
No 284
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=71.70 E-value=4.4 Score=23.89 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 039523 19 LRSLARSAYNRGEYETSKILREAAMAL 45 (244)
Q Consensus 19 ~~~la~~~~~~~~~~~A~~~~~~al~~ 45 (244)
...+|+-+...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 457788888888888888888877653
No 285
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=67.72 E-value=18 Score=22.05 Aligned_cols=56 Identities=5% Similarity=-0.155 Sum_probs=32.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 90 IACLHMIKNKSKEAFIAFKEALKLKRNG------WQLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
.|..++..|+|=+|.+.++......|.. ..+....|......|+. |...+.+++..
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~ 68 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEAR 68 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHH
Confidence 4455566677777777777776666432 11122233344456776 77777777653
No 286
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=66.79 E-value=9 Score=23.50 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=16.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 039523 21 SLARSAYNRGEYETSKILREAAMALNS 47 (244)
Q Consensus 21 ~la~~~~~~~~~~~A~~~~~~al~~~p 47 (244)
.+|..+...|+++.|+..|-+|+...|
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~ 51 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCG 51 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 456666666666666666666666655
No 287
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=65.95 E-value=34 Score=24.58 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=16.9
Q ss_pred HHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 039523 59 AALKARDVEKALDVFTRAVQLDPENGEAWNIIACL 93 (244)
Q Consensus 59 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 93 (244)
++++.|.|++|.+.+++.+..+|.+......|..+
T Consensus 123 VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~I 157 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNI 157 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34555555555555555555444444344444333
No 288
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=62.98 E-value=22 Score=30.46 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 039523 51 DGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK 99 (244)
Q Consensus 51 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 99 (244)
......|...+..|+|.-|.+..+.++..+|++..+...++.++.++|.
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3444556666677777777777777777777777777777777766654
No 289
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=59.94 E-value=40 Score=26.52 Aligned_cols=28 Identities=18% Similarity=0.081 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 039523 84 GEAWNIIACLHMIKNKSKEAFIAFKEAL 111 (244)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 111 (244)
..-|..+|..+++.+++.+|+..+..+-
T Consensus 296 vYPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 296 IYPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 3445556666666677777766665543
No 290
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=57.74 E-value=25 Score=30.15 Aligned_cols=48 Identities=8% Similarity=-0.050 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 039523 85 EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG 132 (244)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~ 132 (244)
+.....|......|+|..|.+....++..+|++..+...++.++.++|
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 345667778889999999999999999999999999999999998877
No 291
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=56.69 E-value=27 Score=20.67 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=13.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 039523 125 SHVALDVGNIGQALEAVQMVLN 146 (244)
Q Consensus 125 a~~~~~~~~~~~A~~~~~~al~ 146 (244)
|.-.-..|++++|+.+|..+++
T Consensus 26 Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 26 AVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 3444566777777666666654
No 292
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=55.15 E-value=30 Score=20.52 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=6.4
Q ss_pred HccCHHHHHHHHHHH
Q 039523 62 KARDVEKALDVFTRA 76 (244)
Q Consensus 62 ~~g~~~~A~~~~~~a 76 (244)
..|++++|+.+|..+
T Consensus 31 ~~g~y~eAl~lY~~a 45 (83)
T 2w2u_A 31 KEGNAEEAITNYKKA 45 (83)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHH
Confidence 344444444444433
No 293
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=54.50 E-value=15 Score=25.97 Aligned_cols=30 Identities=17% Similarity=0.136 Sum_probs=12.4
Q ss_pred HHHHHccCHHHHHHHHHHHHhcCCCcHHHH
Q 039523 58 AAALKARDVEKALDVFTRAVQLDPENGEAW 87 (244)
Q Consensus 58 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 87 (244)
.++++.|.+++|.+.+++....++.+....
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr 154 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFGDPNSHMPFK 154 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-----CCTTH
T ss_pred HHHHHccchHHHHHHHHHHhcCCCCchHHH
Confidence 344555555555555555554444443333
No 294
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=52.69 E-value=37 Score=20.67 Aligned_cols=55 Identities=7% Similarity=-0.038 Sum_probs=35.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCcH----HHHHHH--HHHHHHcCChHHHHHHHHHHHh
Q 039523 56 LGAAALKARDVEKALDVFTRAVQLDPENG----EAWNII--ACLHMIKNKSKEAFIAFKEALK 112 (244)
Q Consensus 56 la~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~~l--~~~~~~~~~~~~A~~~~~~a~~ 112 (244)
.|..++..|+|=+|-+.++......|... ..++.+ |..+...|+. |...+.+++.
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 45666777888888888888887775421 122223 3344566777 7778877765
No 295
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=52.60 E-value=22 Score=20.91 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=15.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHh
Q 039523 88 NIIACLHMIKNKSKEAFIAFKEALK 112 (244)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~a~~ 112 (244)
..+|.=+...|+|+.|+.+|+.+++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3455556666677777666665554
No 296
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=52.55 E-value=34 Score=20.22 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=12.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 039523 126 HVALDVGNIGQALEAVQMVLN 146 (244)
Q Consensus 126 ~~~~~~~~~~~A~~~~~~al~ 146 (244)
.-.-..|++++|+.+|..+++
T Consensus 19 ve~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 19 VKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 334556666666666665554
No 297
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=51.05 E-value=36 Score=20.10 Aligned_cols=10 Identities=10% Similarity=0.022 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 039523 34 TSKILREAAM 43 (244)
Q Consensus 34 ~A~~~~~~al 43 (244)
+|+.+..+|+
T Consensus 10 ~Ai~lv~~Av 19 (83)
T 2v6y_A 10 MARKYAILAV 19 (83)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 298
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=50.76 E-value=57 Score=22.28 Aligned_cols=74 Identities=14% Similarity=0.071 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 039523 85 EAWNIIACLHMIKNKSKEAFIAFKEALKL--KRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIV 162 (244)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 162 (244)
.+|+.++... + ++...|...... ....+..|...|..+...|++.+|...|..+++.... -...|....
T Consensus 67 klWl~ya~~~---~---~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~---P~~~L~~~~ 137 (164)
T 2wvi_A 67 NLWLKLGRLC---N---EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE---PLERLQSQH 137 (164)
T ss_dssp HHHHHHHHHC---S---CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB---SHHHHHHHH
T ss_pred HHHHHHHHhc---C---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHH
Confidence 4555555442 3 355566555443 4567888999999999999999999999999987644 344444444
Q ss_pred HHhcc
Q 039523 163 LNLEG 167 (244)
Q Consensus 163 ~~~~~ 167 (244)
..+..
T Consensus 138 ~~F~~ 142 (164)
T 2wvi_A 138 RQFQA 142 (164)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 299
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=50.26 E-value=92 Score=24.56 Aligned_cols=46 Identities=13% Similarity=-0.001 Sum_probs=35.3
Q ss_pred HHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523 103 AFIAFKEALKL-----KRNGWQLWENYSHVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 103 A~~~~~~a~~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
++..|.+++.. .......+..+|-.+.+.+++.+|+..|..+-..-
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi 326 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVA 326 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHH
Confidence 55666666554 33457778889999999999999999999886543
No 300
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=50.22 E-value=88 Score=25.14 Aligned_cols=28 Identities=14% Similarity=-0.012 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523 118 WQLWENYSHVALDVGNIGQALEAVQMVL 145 (244)
Q Consensus 118 ~~~~~~la~~~~~~~~~~~A~~~~~~al 145 (244)
...+..+|-.+.+.+++.+|+..+..+-
T Consensus 303 vYPYtYlgG~~~R~~~~~eAl~~wa~aa 330 (489)
T 4gq4_A 303 IYPYMYLAGYHCRNRNVREALQAWADTA 330 (489)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccceeecchHHHHhhhHHHHHHHhhhhh
Confidence 3444444555555555555555555443
No 301
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=50.16 E-value=38 Score=20.17 Aligned_cols=23 Identities=17% Similarity=0.014 Sum_probs=13.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Q 039523 125 SHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 125 a~~~~~~~~~~~A~~~~~~al~~ 147 (244)
|.-.-..|++++|+.+|..+++.
T Consensus 23 Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 23 AVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 33345666777766666666543
No 302
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=49.79 E-value=39 Score=20.14 Aligned_cols=23 Identities=9% Similarity=0.109 Sum_probs=11.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 039523 21 SLARSAYNRGEYETSKILREAAM 43 (244)
Q Consensus 21 ~la~~~~~~~~~~~A~~~~~~al 43 (244)
..|...-..|++++|+.+|..++
T Consensus 21 ~~Ave~D~~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 21 KRAVELDSESRYPQALVCYQEGI 43 (86)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444555555555555544
No 303
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=48.92 E-value=26 Score=28.06 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHH
Q 039523 50 PDGWFALGAAALKARDVEKALDVFTRA 76 (244)
Q Consensus 50 ~~~~~~la~~~~~~g~~~~A~~~~~~a 76 (244)
..-+..+|-.+++.+++.+|+..+..+
T Consensus 318 vYPYtYlgGy~yR~~~~reAl~~WA~A 344 (550)
T 3u84_A 318 IYPYMYLAGYHCRNRNVREALQAWADT 344 (550)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccceeecchhhhhcchHHHHHHHHHHH
Confidence 334444555555555555555555444
No 304
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=46.10 E-value=1.7e+02 Score=26.45 Aligned_cols=126 Identities=11% Similarity=0.004 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh--hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 039523 18 ELRSLARSAYNRGEYETSKILREAAMALNSLYP--DGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM 95 (244)
Q Consensus 18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 95 (244)
+-..+|.++.-.++ +++.+.+...+..+.... .+-..+|.++.-.|+-+.....+..+.....+...-...+|..+.
T Consensus 457 AaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll 535 (963)
T 4ady_A 457 ASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALI 535 (963)
T ss_dssp HHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 44577777776665 456667777766443221 355577888888888776666666665533322222233444455
Q ss_pred HcCChHHHHHHHHHHHhcCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523 96 IKNKSKEAFIAFKEALKLKRNGWQLW----ENYSHVALDVGNIGQALEAVQMVLN 146 (244)
Q Consensus 96 ~~~~~~~A~~~~~~a~~~~p~~~~~~----~~la~~~~~~~~~~~A~~~~~~al~ 146 (244)
..|+.+.+....+.... .. ++.+. ..+|..|...|+...-...+..+..
T Consensus 536 ~~g~~e~~~~li~~L~~-~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 536 NYGRQELADDLITKMLA-SD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp TTTCGGGGHHHHHHHHH-CS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHh-CC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 67777666655554433 22 33333 3456667788886554446666553
No 305
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=44.17 E-value=51 Score=19.91 Aligned_cols=21 Identities=19% Similarity=-0.050 Sum_probs=11.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 039523 126 HVALDVGNIGQALEAVQMVLN 146 (244)
Q Consensus 126 ~~~~~~~~~~~A~~~~~~al~ 146 (244)
.-.-..|++++|+.+|..+++
T Consensus 23 ve~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 23 VELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 333455666666555555544
No 306
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=43.43 E-value=1.3e+02 Score=24.29 Aligned_cols=45 Identities=9% Similarity=0.095 Sum_probs=28.8
Q ss_pred HHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 103 AFIAFKEALKL-----KRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 103 A~~~~~~a~~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
++..|.+++.. ...+...+..+|-.+.+.+++.+|+..|..+-..
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHH
Confidence 44444444443 2344566777777888888888888887776543
No 307
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=41.87 E-value=69 Score=20.75 Aligned_cols=55 Identities=11% Similarity=0.021 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH---HhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523 21 SLARSAYNRGEYETSKILREAA---MALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78 (244)
Q Consensus 21 ~la~~~~~~~~~~~A~~~~~~a---l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 78 (244)
..+..++..++.++.+..++.. ++..|.. ....+....-..+..+|.+++++...
T Consensus 45 eASrlyf~~~n~~~m~~~L~pLh~~l~~~PeT---~~E~sF~~~fG~~L~~A~~~~~~y~~ 102 (126)
T 2npu_A 45 EASRLYFGERNVKGMFEVLEPLHAMMERGPQT---LKETSFNQAYGRDLMEAQEWCRKYMK 102 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHccCCCC---HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3455666777777777766555 3334433 33344444444556666666666543
No 308
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=41.09 E-value=54 Score=19.29 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=5.9
Q ss_pred ccCHHHHHHHHHHH
Q 039523 63 ARDVEKALDVFTRA 76 (244)
Q Consensus 63 ~g~~~~A~~~~~~a 76 (244)
.|++++|+.+|..+
T Consensus 26 ~g~y~eAl~~Y~~a 39 (85)
T 2v6x_A 26 ATQYEEAYTAYYNG 39 (85)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 34444444444433
No 309
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=40.06 E-value=1.1e+02 Score=27.54 Aligned_cols=91 Identities=13% Similarity=-0.008 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHH----HHHHHH
Q 039523 18 ELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAW----NIIACL 93 (244)
Q Consensus 18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~----~~l~~~ 93 (244)
+-+.+|.++.-.|+-+.....+..+.+...+...-...+|..+...|+.+.+....+..... .++.+. +.+|..
T Consensus 492 AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglA 569 (963)
T 4ady_A 492 AALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALA 569 (963)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHH
Confidence 44567777777887766666666555433322222334444455566666555555544432 233322 334555
Q ss_pred HHHcCChHHHHHHHHHH
Q 039523 94 HMIKNKSKEAFIAFKEA 110 (244)
Q Consensus 94 ~~~~~~~~~A~~~~~~a 110 (244)
|...|+...-...+..+
T Consensus 570 yaGTGn~~aIq~LL~~~ 586 (963)
T 4ady_A 570 YAGTGNNSAVKRLLHVA 586 (963)
T ss_dssp TTTSCCHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHh
Confidence 56666643333244433
No 310
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=39.52 E-value=85 Score=21.09 Aligned_cols=65 Identities=12% Similarity=0.083 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccc
Q 039523 101 KEAFIAFKEALKL--KRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLEGR 168 (244)
Q Consensus 101 ~~A~~~~~~a~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 168 (244)
.++...|.-.... ....+..|...|..+...|++.+|...|+.+++.... -...|......+..+
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~---P~~rL~~~~~~F~~R 148 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE---PREFLQQQYRLFQTR 148 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB---SHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc---cHHHHHHHHHHHHHH
Confidence 3477777766554 4456888999999999999999999999999987544 455565555555544
No 311
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=39.36 E-value=56 Score=20.80 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=10.0
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 039523 129 LDVGNIGQALEAVQMVLN 146 (244)
Q Consensus 129 ~~~~~~~~A~~~~~~al~ 146 (244)
-..|++++|+.+|..+++
T Consensus 29 D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 29 DKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 444666666655555544
No 312
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=38.37 E-value=73 Score=22.57 Aligned_cols=40 Identities=20% Similarity=0.182 Sum_probs=25.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 039523 123 NYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIV 162 (244)
Q Consensus 123 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 162 (244)
....+|.+.|.+++|.+.+++....++++..-...|..+.
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II 161 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMII 161 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4456788999999999999998887766555444444444
No 313
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=37.98 E-value=89 Score=25.16 Aligned_cols=46 Identities=22% Similarity=0.078 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhCCCC--------hhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523 33 ETSKILREAAMALNSLY--------PDGWFALGAAALKARDVEKALDVFTRAVQ 78 (244)
Q Consensus 33 ~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 78 (244)
+..+.-++.|+..-|.. ..++..+|.+++..|+|++|.+..++++.
T Consensus 165 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 165 DFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 34444555565554432 24667788888888888888888887774
No 314
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.53 E-value=1.5e+02 Score=23.36 Aligned_cols=91 Identities=12% Similarity=-0.040 Sum_probs=61.9
Q ss_pred HHHHHHccCHHHHHHHHHHHHhcC-----------------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------
Q 039523 57 GAAALKARDVEKALDVFTRAVQLD-----------------PENGEAWNIIACLHMIKNKSKEAFIAFKEALKL------ 113 (244)
Q Consensus 57 a~~~~~~g~~~~A~~~~~~a~~~~-----------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------ 113 (244)
..+.....+.++|.+.+++..... .....+...++..+...|+.++|...++++-..
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 344556778899999888764321 011245566788889999999999998887543
Q ss_pred -CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 114 -KRN-GWQLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 114 -~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
+|. ....+...+..+...+++..+....-.++..
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLST 198 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 111 2344555677788889998887777776653
No 315
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=37.42 E-value=95 Score=21.06 Aligned_cols=83 Identities=8% Similarity=0.081 Sum_probs=46.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHccCHHH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 039523 21 SLARSAYNRGEYETSKILREAAMALNSL--YPDGWFALGAAALKARDVEK-ALDVFTRAVQLDPENGEAWNIIACLHMIK 97 (244)
Q Consensus 21 ~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~-A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 97 (244)
.-+...+-..+|.+.+..++. .+|. .....+.+|..|....++.+ ..+.....+ .+....- +.+=+++...
T Consensus 13 i~a~~afl~~dYs~VI~~L~~---~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~i--tlkSde~-yL~YWIyiGR 86 (161)
T 2ynq_A 13 IQSTELFLQNKYSDVITTLED---YAPEDMPYVIQYELASSYVMTESLTEEQRQTVSNNI--TLKTDEQ-YMLYWIYIGR 86 (161)
T ss_dssp HHHHHHHTTTCHHHHHHHHTT---SCGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTC--CTTSCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHhc---CChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhC--CccCCHH-HHHHHHHHcC
Confidence 345666677788877766554 2332 24567788888888776542 222222222 2222111 2223556677
Q ss_pred CChHHHHHHHHH
Q 039523 98 NKSKEAFIAFKE 109 (244)
Q Consensus 98 ~~~~~A~~~~~~ 109 (244)
|++++|+.....
T Consensus 87 g~~~eAlDiA~~ 98 (161)
T 2ynq_A 87 SQSEEALELART 98 (161)
T ss_dssp TCHHHHHHHHHH
T ss_pred CchHHHHHHHHh
Confidence 888888776554
No 316
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=37.29 E-value=1.6e+02 Score=23.69 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=19.6
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 039523 83 NGEAWNIIACLHMIKNKSKEAFIAFKEALK 112 (244)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 112 (244)
...-|..+|-.+.+.+++.+|+..+..+-.
T Consensus 302 hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 302 HIYPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 344455667777777777777777766543
No 317
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=36.99 E-value=64 Score=20.54 Aligned_cols=17 Identities=47% Similarity=0.663 Sum_probs=8.6
Q ss_pred HccCHHHHHHHHHHHHh
Q 039523 62 KARDVEKALDVFTRAVQ 78 (244)
Q Consensus 62 ~~g~~~~A~~~~~~a~~ 78 (244)
..|++++|+.+|..++.
T Consensus 30 ~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 30 KAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 34555555555554443
No 318
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=36.54 E-value=1.2e+02 Score=24.88 Aligned_cols=28 Identities=29% Similarity=0.090 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523 51 DGWFALGAAALKARDVEKALDVFTRAVQ 78 (244)
Q Consensus 51 ~~~~~la~~~~~~g~~~~A~~~~~~a~~ 78 (244)
.++..+|.+++..|++++|....++++.
T Consensus 204 aA~allArvyL~~~~~~~A~~~a~~vi~ 231 (495)
T 3lew_A 204 VVLGILSRACLYARQWEKAKTYSDKLLA 231 (495)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3566777888888888888887777764
No 319
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=36.10 E-value=1.2e+02 Score=21.99 Aligned_cols=117 Identities=9% Similarity=0.030 Sum_probs=58.4
Q ss_pred hcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCChHHHHHH
Q 039523 28 NRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP-ENGEAWNIIACLHMIKNKSKEAFIA 106 (244)
Q Consensus 28 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~ 106 (244)
-+.+|.+|...++..-..+|..+..+..- ...+|.+-+..+++=..... .....+.....+. -..+-..|+..
T Consensus 36 VMkEW~Eae~q~k~l~kaDpk~Ae~~k~~-----m~~rFQ~~v~sLEqE~a~ErqqL~etH~qRV~a~-LNerrr~Ale~ 109 (239)
T 3k66_A 36 VMKEWGDLETRYNEQKAKDPKGAEKFKSQ-----MNARFQKTVSSLEEEHKRMRKEIEAVHEERVQAM-LNEKKRDATHD 109 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHSHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCHHHHHHHHHH-----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 35678888888888887777433322211 11223333333332111110 1112222222222 22345688999
Q ss_pred HHHHH--hcCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhhcCC
Q 039523 107 FKEAL--KLKRNGWQLWENYSHVA--LDVGNIGQALEAVQMVLNITNN 150 (244)
Q Consensus 107 ~~~a~--~~~p~~~~~~~~la~~~--~~~~~~~~A~~~~~~al~~~p~ 150 (244)
|..++ ...|.++.-....-.-| ....+-.-.+.+|+-+...+|.
T Consensus 110 y~~AL~~q~~pP~~~~Vl~aLk~yiRae~KDR~Htl~hy~Hl~~~dpe 157 (239)
T 3k66_A 110 YRQALATHVNKPNKHSVLQSLKAYIRAEEKDRMHTLNRYRHLLKADSK 157 (239)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHccCHH
Confidence 99998 45455543222222222 2333555577888888888776
No 320
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=35.88 E-value=80 Score=19.70 Aligned_cols=17 Identities=12% Similarity=0.010 Sum_probs=7.8
Q ss_pred HHHHHHHccCHHHHHHH
Q 039523 56 LGAAALKARDVEKALDV 72 (244)
Q Consensus 56 la~~~~~~g~~~~A~~~ 72 (244)
....++..|+|++|...
T Consensus 45 R~sSLmNrG~Yq~Al~l 61 (115)
T 2uwj_G 45 RISSLANQGRYQEALAF 61 (115)
T ss_dssp HHHHHHHTTCHHHHHGG
T ss_pred HHHHHHcchhHHHHHHh
Confidence 33444445555544443
No 321
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=34.82 E-value=1.3e+02 Score=24.11 Aligned_cols=46 Identities=13% Similarity=0.131 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 102 EAFIAFKEALKLKR--------NGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 102 ~A~~~~~~a~~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
..+..++.|+..-| +...++..+|+++...|++++|....++++..
T Consensus 166 ~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 166 FIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 34444555555433 23567888999999999999999999999864
No 322
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=34.08 E-value=1e+02 Score=24.85 Aligned_cols=30 Identities=13% Similarity=0.249 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 118 WQLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 118 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
.+++...|.++...|+..+|...+.++.+.
T Consensus 338 aEv~Li~AEA~~~~g~~~~A~~~lN~vR~R 367 (461)
T 3kez_A 338 SEAYLNAAEAAVQTGDNAKAVKYLNSIVQR 367 (461)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCchHHHHHHHHHHHh
Confidence 578888899999999998898888877654
No 323
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=33.34 E-value=86 Score=22.59 Aligned_cols=67 Identities=9% Similarity=0.052 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhcCCCcHHH--------HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 039523 66 VEKALDVFTRAVQLDPENGEA--------WNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG 132 (244)
Q Consensus 66 ~~~A~~~~~~a~~~~p~~~~~--------~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~ 132 (244)
.+-|+..++..-+..+-.... -...-.++.+.|.|++|.+.+++....++.+......|..+-....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Confidence 456666666665555422211 1223345678999999999999998887777666666666655544
No 324
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=31.98 E-value=95 Score=19.40 Aligned_cols=19 Identities=16% Similarity=0.001 Sum_probs=9.2
Q ss_pred HHHHHHHHccCHHHHHHHH
Q 039523 55 ALGAAALKARDVEKALDVF 73 (244)
Q Consensus 55 ~la~~~~~~g~~~~A~~~~ 73 (244)
.....++..|+|++|....
T Consensus 45 IR~sSLmNrG~Yq~Al~l~ 63 (116)
T 2p58_C 45 IRLSSLMNRGDYASALQQG 63 (116)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcchhHHHHHHhc
Confidence 3344445555555555444
No 325
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.48 E-value=1.9e+02 Score=22.76 Aligned_cols=90 Identities=12% Similarity=-0.032 Sum_probs=59.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhC-------C--------CC--hhHHHHHHHHHHHccCHHHHHHHHHHHHhc------
Q 039523 23 ARSAYNRGEYETSKILREAAMALN-------S--------LY--PDGWFALGAAALKARDVEKALDVFTRAVQL------ 79 (244)
Q Consensus 23 a~~~~~~~~~~~A~~~~~~al~~~-------p--------~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------ 79 (244)
..+.....+.++|..++.+....- + .. ..+...++..+...|+.++|...++++-..
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 345556788999999988764321 0 01 235567888899999999999999887642
Q ss_pred -CCC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 039523 80 -DPE-NGEAWNIIACLHMIKNKSKEAFIAFKEALK 112 (244)
Q Consensus 80 -~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 112 (244)
+|. ....+...+..+...+++..+....-..+.
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 121 123445556777788888777666555543
No 326
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=31.19 E-value=1.5e+02 Score=24.25 Aligned_cols=28 Identities=11% Similarity=0.018 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 039523 85 EAWNIIACLHMIKNKSKEAFIAFKEALK 112 (244)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 112 (244)
.++..+|.+++..|+|++|....++++.
T Consensus 204 aA~allArvyL~~~~~~~A~~~a~~vi~ 231 (495)
T 3lew_A 204 VVLGILSRACLYARQWEKAKTYSDKLLA 231 (495)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3455555555555555555555555554
No 327
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=31.06 E-value=1.7e+02 Score=23.73 Aligned_cols=30 Identities=13% Similarity=0.115 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039523 84 GEAWNIIACLHMIKNKSKEAFIAFKEALKL 113 (244)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 113 (244)
..++..+|.+++..|+|++|....++++..
T Consensus 202 ~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 202 WAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 345666677777777777777777766653
No 328
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=31.03 E-value=0.15 Score=41.76 Aligned_cols=79 Identities=11% Similarity=0.059 Sum_probs=53.4
Q ss_pred CChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 039523 48 LYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV 127 (244)
Q Consensus 48 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 127 (244)
+++.+|......+...+++.-|..+--..+-.. +.. -.+...|...|.+++-+..++.++.+...+......+|.+
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIvha-deL---~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaIL 272 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-DEL---EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 272 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-SCC---SGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcccH-HHH---HHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 456677777777777777777766655544322 211 1223446677888888888888888877788888888877
Q ss_pred HHH
Q 039523 128 ALD 130 (244)
Q Consensus 128 ~~~ 130 (244)
|.+
T Consensus 273 YsK 275 (624)
T 3lvg_A 273 YSK 275 (624)
T ss_dssp HHS
T ss_pred HHh
Confidence 764
No 329
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=30.98 E-value=1.5e+02 Score=23.90 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 102 EAFIAFKEALKLKR--------NGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 102 ~A~~~~~~a~~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
..+.-++.|+..-| +...++..+|+++...|++++|....++++..
T Consensus 172 ~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 172 EIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 33444555555433 23567888999999999999999999999864
No 330
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=29.84 E-value=1.6e+02 Score=23.78 Aligned_cols=48 Identities=25% Similarity=0.304 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523 101 KEAFIAFKEALKLKR--------NGWQLWENYSHVALDVGNIGQALEAVQMVLNIT 148 (244)
Q Consensus 101 ~~A~~~~~~a~~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 148 (244)
+..+.-++.|+..-| +...++..+|++|...|++++|....++++...
T Consensus 177 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 232 (477)
T 3mcx_A 177 EQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKNN 232 (477)
T ss_dssp HHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCC
Confidence 344455556655544 235678889999999999999999999998753
No 331
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=28.99 E-value=68 Score=20.00 Aligned_cols=32 Identities=16% Similarity=-0.027 Sum_probs=22.1
Q ss_pred ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039523 12 QMISQLELRSLARSAYNRGEYETSKILREAAM 43 (244)
Q Consensus 12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 43 (244)
+-++++....-|....+.|+|++|...++++-
T Consensus 16 ~aG~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~ 47 (105)
T 2e2a_A 16 YAGDARSKLLEALKAAENGDFAKADSLVVEAG 47 (105)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44566666667777777777777777776663
No 332
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=28.35 E-value=72 Score=19.82 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=22.1
Q ss_pred ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039523 12 QMISQLELRSLARSAYNRGEYETSKILREAAM 43 (244)
Q Consensus 12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 43 (244)
+-.+++....-|....+.|+|++|...++++-
T Consensus 14 ~aG~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~ 45 (103)
T 1wcr_A 14 NSGQARSLAYAALKQAKQGDFAAAKAMMDQSR 45 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44566666677777777778877777776663
No 333
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=28.01 E-value=1e+02 Score=18.56 Aligned_cols=32 Identities=16% Similarity=0.296 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 039523 15 SQLELRSLARSAYNRGEYETSKILREAAMALN 46 (244)
Q Consensus 15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 46 (244)
.++....-|..++..++|.+|...++++....
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t 83 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKALNLS 83 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHccc
Confidence 35556666777777777777777777776543
No 334
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.97 E-value=92 Score=19.84 Aligned_cols=16 Identities=6% Similarity=0.299 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhhCC
Q 039523 32 YETSKILREAAMALNS 47 (244)
Q Consensus 32 ~~~A~~~~~~al~~~p 47 (244)
+++|..+..++|..+.
T Consensus 19 h~~AF~~Is~AL~~DE 34 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTDE 34 (116)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhh
Confidence 5566666666666554
No 335
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=24.71 E-value=90 Score=19.61 Aligned_cols=31 Identities=10% Similarity=-0.078 Sum_probs=20.4
Q ss_pred ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039523 12 QMISQLELRSLARSAYNRGEYETSKILREAA 42 (244)
Q Consensus 12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 42 (244)
+-.+++....-|....+.|+|++|...++++
T Consensus 18 ~aG~Ars~~~eAl~~Ak~gdfe~A~~~l~eA 48 (109)
T 3k1s_A 18 NSGNARSFAMEALQFAKQGKMAEADEAMVKA 48 (109)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445666666666666777777777776665
No 336
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=24.57 E-value=2.3e+02 Score=22.95 Aligned_cols=27 Identities=7% Similarity=-0.022 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523 52 GWFALGAAALKARDVEKALDVFTRAVQ 78 (244)
Q Consensus 52 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 78 (244)
++..+|.+++..|++++|....++++.
T Consensus 199 A~allarvyL~~~~~~~A~~~a~~vi~ 225 (478)
T 3hdx_A 199 AYSVLAHICAWQGNYAEAETYSAFIID 225 (478)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 556677777777888888777777764
No 337
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=24.29 E-value=1.2e+02 Score=19.60 Aligned_cols=53 Identities=11% Similarity=0.077 Sum_probs=25.7
Q ss_pred HHHHHHHccCHHHHHHHHHHH---HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 039523 56 LGAAALKARDVEKALDVFTRA---VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEAL 111 (244)
Q Consensus 56 la~~~~~~g~~~~A~~~~~~a---~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 111 (244)
-+.+++..++.++.+..+... +...|... ...+-......+..+|..++++..
T Consensus 46 ASrlyf~~~n~~~m~~~L~pLh~~l~~~PeT~---~E~sF~~~fG~~L~~A~~~~~~y~ 101 (126)
T 2npu_A 46 ASRLYFGERNVKGMFEVLEPLHAMMERGPQTL---KETSFNQAYGRDLMEAQEWCRKYM 101 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHHccCCCCH---HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344555667777777666554 33344332 222222222334455665555544
No 338
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=29.94 E-value=16 Score=31.32 Aligned_cols=44 Identities=23% Similarity=0.084 Sum_probs=23.3
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 039523 56 LGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK 99 (244)
Q Consensus 56 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 99 (244)
.|...+..|+|.-|.++.+.++..+|++..+...++.++..+|.
T Consensus 467 ~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~ 510 (668)
T 2yhe_A 467 QMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGY 510 (668)
Confidence 34444445555555555555555555555555555555555443
No 339
>3sl9_C B-cell CLL/lymphoma 9 protein; armadillo repeat, components of the WNT signaling pathway, B catenin, signaling protein, protein binding; 2.20A {Homo sapiens} PDB: 2gl7_C
Probab=23.93 E-value=84 Score=16.15 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCC
Q 039523 216 EHLMEFLWKILQQAAHVYMIIFFPSF 241 (244)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~~~~~~~~ 241 (244)
...++.-...+|.+ +...+++||+.
T Consensus 12 ~eqlehrerslqtl-rdi~r~~~pDd 36 (55)
T 3sl9_C 12 QEQLEHRERSLQTL-RDIQRMLFPDE 36 (55)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHC---
T ss_pred HHHHHHHHHHHHHH-HHHHHHhCCcc
Confidence 34455555666666 67788899863
No 340
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=23.17 E-value=0.85 Score=37.52 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=26.6
Q ss_pred ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 039523 49 YPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEA 110 (244)
Q Consensus 49 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 110 (244)
.+.+|..+|.+++..+...+|++.|-++ +++..+.....+..+.|++++=+.++..+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~Ma 109 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMA 109 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3445555555555555555555544222 22222333334444455555555544433
No 341
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=22.32 E-value=1.3e+02 Score=19.35 Aligned_cols=31 Identities=13% Similarity=-0.022 Sum_probs=19.3
Q ss_pred ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039523 12 QMISQLELRSLARSAYNRGEYETSKILREAA 42 (244)
Q Consensus 12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 42 (244)
+-.+++....-|....+.|+|++|...++++
T Consensus 33 ~aG~ARS~~~eAl~~Ak~gdfe~A~~~l~eA 63 (120)
T 3l8r_A 33 NSGNARSIVHEAFDAMREKNYILAEQKLQEA 63 (120)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555666666666667777776666655
No 342
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=21.88 E-value=3e+02 Score=22.54 Aligned_cols=29 Identities=14% Similarity=0.329 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 039523 84 GEAWNIIACLHMIKNKSKEAFIAFKEALK 112 (244)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 112 (244)
..++..+|.+++..++|++|....++++.
T Consensus 182 ~aA~allarv~L~~~~~~~A~~~a~~vi~ 210 (517)
T 3qnk_A 182 GAAYALKSRVELYDKRYEDVIKSCAEVYK 210 (517)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666664
No 343
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=27.44 E-value=19 Score=30.88 Aligned_cols=51 Identities=8% Similarity=-0.173 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 039523 86 AWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQ 136 (244)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~ 136 (244)
.....+.-.+..|+|..|.+....++..+|++..+...++.++.++|.-.+
T Consensus 463 ~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~ 513 (668)
T 2yhe_A 463 AVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTE 513 (668)
Confidence 344566677789999999999999999999999999999999988875443
No 344
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=20.01 E-value=3.3e+02 Score=22.25 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523 118 WQLWENYSHVALDVGNIGQALEAVQMVLNI 147 (244)
Q Consensus 118 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 147 (244)
..++..+|+++...+++++|....++++..
T Consensus 182 ~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 182 GAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888999999999999999999999864
Done!