BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039524
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 108/333 (32%), Positives = 172/333 (51%), Gaps = 29/333 (8%)
Query: 2 GLKSLPKQFHQPLEER------FSEKKILDQVSIPLIDMSNWESPE------VAKSICDA 49
G+ S+PK++ +P EE F E+K D +P ID+ N ES + + + A
Sbjct: 13 GIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKA 72
Query: 50 AENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPTNKVRLGSSFVPLV 109
+ +WG ++NHG+P +++ERVK+A FF+L EEK KY+ + + GS
Sbjct: 73 SLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNA 132
Query: 110 EKALEWKD-FLSLFYGSEEETSAFWPPVCKD---ETLEYMKSSEVLIRRLMHVLVKGLNV 165
LEW+D F L Y E+ + WP D T EY K +L ++ L GL +
Sbjct: 133 SGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGL 192
Query: 166 ------KRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGL 219
K + + E +L ++ +NYYP CP PEL +GV H+D+S T +L + + GL
Sbjct: 193 EPDRLEKEVGGLEELLL----QMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGL 248
Query: 220 HVRKDSGNDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVN- 278
+ + W+ + S++++IGD L+I+SNG+YKSI H + N + RIS +F
Sbjct: 249 QLFYE--GKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEP 306
Query: 279 PKPEAILCPFPEVLANGEKPLYKPVLCADYSRH 311
PK + +L P PE+++ + P A + H
Sbjct: 307 PKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEH 339
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 108/333 (32%), Positives = 172/333 (51%), Gaps = 29/333 (8%)
Query: 2 GLKSLPKQFHQPLEER------FSEKKILDQVSIPLIDMSNWESPE------VAKSICDA 49
G+ S+PK++ +P EE F E+K D +P ID+ N ES + + + A
Sbjct: 14 GIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKA 73
Query: 50 AENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPTNKVRLGSSFVPLV 109
+ +WG ++NHG+P +++ERVK+A FF+L EEK KY+ + + GS
Sbjct: 74 SLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNA 133
Query: 110 EKALEWKD-FLSLFYGSEEETSAFWPPVCKD---ETLEYMKSSEVLIRRLMHVLVKGLNV 165
LEW+D F L Y E+ + WP D T EY K +L ++ L GL +
Sbjct: 134 SGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGL 193
Query: 166 ------KRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGL 219
K + + E +L ++ +NYYP CP PEL +GV H+D+S T +L + + GL
Sbjct: 194 EPDRLEKEVGGLEELLL----QMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGL 249
Query: 220 HVRKDSGNDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVN- 278
+ + W+ + S++++IGD L+I+SNG+YKSI H + N + RIS +F
Sbjct: 250 QLFYE--GKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEP 307
Query: 279 PKPEAILCPFPEVLANGEKPLYKPVLCADYSRH 311
PK + +L P PE+++ + P A + H
Sbjct: 308 PKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEH 340
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/333 (32%), Positives = 168/333 (50%), Gaps = 29/333 (8%)
Query: 2 GLKSLPKQFHQPLEER------FSEKKILDQVSIPLIDMSNWESPE------VAKSICDA 49
G+ S+PK++ +P EE F E+K D +P ID+ N ES + + + A
Sbjct: 14 GIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKA 73
Query: 50 AENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPTNKVRLGSSFVPLV 109
+ +WG ++NHG+P ++ ERVK+A FF+L EEK KY+ + + GS
Sbjct: 74 SLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNA 133
Query: 110 EKALEWKD-FLSLFYGSEEETSAFWPPVCKD---ETLEYMKSSEVLIRRLMHVLVKGLNV 165
LEW+D F L Y E+ + WP D T EY K +L ++ L GL +
Sbjct: 134 SGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGL 193
Query: 166 ------KRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGL 219
K + + E +L + +NYYP CP PEL +GV H+D+S T +L + + GL
Sbjct: 194 EPDRLEKEVGGLEELLL----QXKINYYPKCPQPELALGVEAHTDVSALTFILHNXVPGL 249
Query: 220 HVRKDSGNDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVN- 278
+ + W+ + S++ +IGD L+I+SNG+YKSI H + N + RIS +F
Sbjct: 250 QLFYE--GKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEP 307
Query: 279 PKPEAILCPFPEVLANGEKPLYKPVLCADYSRH 311
PK + +L P PE ++ + P A + H
Sbjct: 308 PKDKIVLKPLPEXVSVESPAKFPPRTFAQHIEH 340
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 143/297 (48%), Gaps = 27/297 (9%)
Query: 29 IPLIDMSNWESPEVAKSICDAAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRK 88
I L ++ E + I DA ENWGFF++VNHG+P EV + V++ T K
Sbjct: 7 ISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXT----------KGH 56
Query: 89 YSKENSPTNKVRLGSSFVPLVEKALEWKDFLSLFYGSEEETSAFWPPVCKDETL-----E 143
Y K K + S + V+ + D+ S F+ S DE +
Sbjct: 57 YKKCXEQRFKELVASKALEGVQAEVTDXDWESTFFLKHLPISNISEVPDLDEEYREVXRD 116
Query: 144 YMKSSEVLIRRLMHVLVKGLNVKRIDEIREPMLLGSRRVN----LNYYPMCPNPELTVGV 199
+ K E L L+ +L + L +++ + GS+ N ++ YP CP P+L G+
Sbjct: 117 FAKRLEKLAEELLDLLCENLGLEK--GYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGL 174
Query: 200 GRHSDISTFTILLQDD-IGGLHVRKDSGNDWIHVAPISGSLIINIGDALQIMSNGRYKSI 258
H+D +L QDD + GL + KD WI V P S+++N+GD L++++NG+YKS+
Sbjct: 175 RAHTDAGGIILLFQDDKVSGLQLLKDG--QWIDVPPXRHSIVVNLGDQLEVITNGKYKSV 232
Query: 259 EHCVIANGSQNRISVPLFVNPKPEAILCPFPEVL---ANGEKPLYKPVLCADYSRHF 312
H VIA R S+ F NP +A++ P P ++ A K +Y + DY + +
Sbjct: 233 XHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKLY 289
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 110/254 (43%), Gaps = 27/254 (10%)
Query: 43 AKSICDAAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPTNKVRLG 102
A+ + + E +GF + ++ + ++ ++ FFALP E K++Y+ V+ G
Sbjct: 23 AQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAG-------VKGG 75
Query: 103 S-SFVPL---VEKALEWKDFLSLFYGSEE----------ETSAFWP---PVCKDETLEYM 145
+ ++P K + D ++ + WP P K +
Sbjct: 76 ARGYIPFGVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLY 135
Query: 146 KSSEVLIRRLMHVLVKGLNVKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDI 205
S + +++ + L ++R D + + G+ + L +YP P V G H DI
Sbjct: 136 NSLDGXGGKVLEAIATYLKLER-DFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDI 194
Query: 206 STFTILLQDDIGGLHVRKDSGNDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIAN 265
+T T+LL + GGL V G W+ + P G L+INIGD L+ ++N S H V+ N
Sbjct: 195 NTITLLLGAEEGGLEVLDRDGQ-WLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVV-N 252
Query: 266 GSQNRISVPLFVNP 279
R VP + P
Sbjct: 253 PPPERRGVPRYSTP 266
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 117/277 (42%), Gaps = 41/277 (14%)
Query: 32 IDMSNWESPEVAKSICDAAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSK 91
++ ++ + + AK ++ GF + NH + E++ER+ FF A+ + +++
Sbjct: 4 LETIDYRAADSAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFXFNR 63
Query: 92 ENSPTNKVRLGSSFVPL----VEKALEWKDFLSLFYGSEEETSAFW---PPVCKDETLEY 144
E F P K KD ++ W P + L Y
Sbjct: 64 ETH--------DGFFPASISETAKGHTVKDIKEYYHVYP------WGRIPDSLRANILAY 109
Query: 145 MKSSEVLIRRLMHVLVKGLNVKRIDEIRE------PMLLGSRRVNL----NYYPMCPNPE 194
+ + L L+ + + DEI+ P + + L +Y P + E
Sbjct: 110 YEKANTLASELL----EWIETYSPDEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEE 165
Query: 195 L-TVGVGRHSDISTFTILLQDDIGGLHVRKDSGNDWIHVAPISGSLIINIGDALQIMSNG 253
+ H DI+ T+L + GL V+ G+ W+ V G++IINIGD LQ S+G
Sbjct: 166 XGAIRAAAHEDINLITVLPTANEPGLQVKAKDGS-WLDVPSDFGNIIINIGDXLQEASDG 224
Query: 254 RYKSIEHCVI----ANGSQNRISVPLFVNPKPEAILC 286
+ S H VI + +++RIS+PLF++P P +L
Sbjct: 225 YFPSTSHRVINPEGTDKTKSRISLPLFLHPHPSVVLS 261
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/321 (23%), Positives = 132/321 (41%), Gaps = 44/321 (13%)
Query: 24 LDQVSIPLIDMS------NWESPEVAKSICDAAENWGFFQIVNHGVPLEVLERVKEATHR 77
+ + ++P ID+S VA+ I A+ + GFF VNHG+ ++ L + + H
Sbjct: 4 VSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFH- 62
Query: 78 FFALPAEEK-----RKYSKENSPTNKVRLGSSFVPLVEKALEWKDFLSLFYGSEE----- 127
++ EEK R Y+KE+ ++VR G +KA+E +L+ + +
Sbjct: 63 -MSITPEEKWDLAIRAYNKEHQ--DQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQA 119
Query: 128 ----ETSAFWP-----PVCKDETLEYMKSSEVLIRRLM--HVLVKGLNVKRIDEIREPML 176
WP P +D +Y L L+ + L G +P
Sbjct: 120 KTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDD 179
Query: 177 LGSRRVNLNYYPMCPNPELTVGVGR---------HSDISTFTILLQDDIGGLHVRKDSGN 227
+ V + Y + P PE + H D+S T+L Q ++ L V +G
Sbjct: 180 TLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAG- 238
Query: 228 DWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVNPKPEAILCP 287
+ + +IN G + ++N YK+ H V ++ R S+P FVN ++++ P
Sbjct: 239 -YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE-RQSLPFFVNLGYDSVIDP 296
Query: 288 FPEVLANGEKPLYKPVLCADY 308
F NG K +P+ DY
Sbjct: 297 FDPREPNG-KSDREPLSYGDY 316
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/321 (23%), Positives = 132/321 (41%), Gaps = 44/321 (13%)
Query: 24 LDQVSIPLIDMS------NWESPEVAKSICDAAENWGFFQIVNHGVPLEVLERVKEATHR 77
+ + ++P ID+S VA+ I A+ + GFF VNHG+ ++ L + + H
Sbjct: 4 VSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFH- 62
Query: 78 FFALPAEEK-----RKYSKENSPTNKVRLGSSFVPLVEKALEWKDFLSLFYGSEE----- 127
++ EEK R Y+KE+ ++VR G +KA+E +L+ + +
Sbjct: 63 -MSITPEEKWDLAIRAYNKEHQ--DQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQA 119
Query: 128 ----ETSAFWP-----PVCKDETLEYMKSSEVLIRRLM--HVLVKGLNVKRIDEIREPML 176
WP P +D +Y L L+ + L G +P
Sbjct: 120 KTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDD 179
Query: 177 LGSRRVNLNYYPMCPNPELTVGVGR---------HSDISTFTILLQDDIGGLHVRKDSGN 227
+ V + Y + P PE + H D+S T+L Q ++ L V +G
Sbjct: 180 TLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAG- 238
Query: 228 DWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVNPKPEAILCP 287
+ + +IN G + ++N YK+ H V ++ R S+P FVN ++++ P
Sbjct: 239 -YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE-RQSLPFFVNLGYDSVIDP 296
Query: 288 FPEVLANGEKPLYKPVLCADY 308
F NG K +P+ DY
Sbjct: 297 FDPREPNG-KSDREPLSYGDY 316
>pdb|2XN0|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm, Ptcl4 Derivative
pdb|2XN0|B Chain B, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm, Ptcl4 Derivative
pdb|2XN1|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|B Chain B, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|C Chain C, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|D Chain D, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
Length = 732
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 2 GLKSLPKQFHQPLEERFSEKKILDQVSIPLIDMSNWESP------EVAKSICDAAENWGF 55
GL + + FH + ER K DQ+ L++ NWE+ + K+I D A+ G
Sbjct: 307 GLNKMSQAFHSLIHERIMRSKFKDQIRPVLVN--NWEATYFDFNEDKLKTIVDKAKKLGL 364
Query: 56 FQIV 59
V
Sbjct: 365 EMFV 368
>pdb|2XN2|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Galactose
Length = 732
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 2 GLKSLPKQFHQPLEERFSEKKILDQVSIPLIDMSNWESP------EVAKSICDAAENWGF 55
GL + + FH + ER K DQ+ L++ NWE+ + K+I D A+ G
Sbjct: 307 GLNKMSQAFHSLIHERIMRSKFKDQIRPVLVN--NWEATYFDFNEDKLKTIVDKAKKLGL 364
Query: 56 FQIV 59
V
Sbjct: 365 EMFV 368
>pdb|1ESJ|A Chain A, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESJ|B Chain B, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESJ|C Chain C, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESQ|A Chain A, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate.
pdb|1ESQ|B Chain B, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate.
pdb|1ESQ|C Chain C, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate
Length = 284
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Query: 232 VAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVNP 279
+A I+G+L++NIG + +S+E +IA S N VP+ ++P
Sbjct: 67 MAKIAGALVLNIGTLSK-------ESVEAMIIAGKSANEHGVPVILDP 107
>pdb|1EKK|A Chain A, Crystal Structure Of Hydroxyethylthiazole Kinase In The R3
Form With Hydroxyethylthiazole
pdb|1EKK|B Chain B, Crystal Structure Of Hydroxyethylthiazole Kinase In The R3
Form With Hydroxyethylthiazole
pdb|1EKQ|A Chain A, Crystal Structure Of Hydroxyethylthiazole Kinase In R3
Space Group
pdb|1EKQ|B Chain B, Crystal Structure Of Hydroxyethylthiazole Kinase In R3
Space Group
Length = 272
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Query: 232 VAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVNP 279
+A I+G+L++NIG + +S+E +IA S N VP+ ++P
Sbjct: 55 MAKIAGALVLNIGTLSK-------ESVEAMIIAGKSANEHGVPVILDP 95
>pdb|1C3Q|A Chain A, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
pdb|1C3Q|B Chain B, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
pdb|1C3Q|C Chain C, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
Length = 284
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Query: 232 VAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVNP 279
+A I+G+L++NIG + +S+E +IA S N VP+ ++P
Sbjct: 67 MAKIAGALVLNIGTLSK-------ESVEAMIIAGKSANEHGVPVILDP 107
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 30 PLIDMSNWESPEVAKSICDAAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKY 89
PL+ N E P+V + + AAE W I G+ L+ E +H+F+ E R+
Sbjct: 290 PLMPKLNTEHPDVKEYLLKAAEYW----IRETGIDGWRLDVANEVSHQFW----REFRRV 341
Query: 90 SKENSP 95
K+ +P
Sbjct: 342 VKQANP 347
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,407,519
Number of Sequences: 62578
Number of extensions: 439719
Number of successful extensions: 1165
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1131
Number of HSP's gapped (non-prelim): 38
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)