Query 039528
Match_columns 136
No_of_seqs 117 out of 1798
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 10:35:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039528.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039528hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.7 2E-17 4.4E-22 122.1 10.3 62 5-66 140-201 (968)
2 PLN00113 leucine-rich repeat r 99.7 3.8E-17 8.2E-22 120.7 10.3 132 3-135 162-296 (968)
3 KOG0617 Ras suppressor protein 99.7 4.6E-20 9.9E-25 109.1 -4.6 131 3-136 54-186 (264)
4 KOG4194 Membrane glycoprotein 99.7 4.9E-18 1.1E-22 116.2 1.2 132 3-135 291-428 (873)
5 KOG0617 Ras suppressor protein 99.6 3E-17 6.5E-22 97.3 -2.3 128 4-135 32-162 (264)
6 PF14580 LRR_9: Leucine-rich r 99.6 3.5E-15 7.5E-20 89.8 5.8 122 4-130 18-147 (175)
7 KOG4194 Membrane glycoprotein 99.6 1.6E-15 3.5E-20 104.1 4.4 132 2-135 99-233 (873)
8 KOG0444 Cytoskeletal regulator 99.5 1.1E-14 2.4E-19 101.4 1.4 130 4-136 102-258 (1255)
9 KOG1259 Nischarin, modulator o 99.5 5.4E-15 1.2E-19 94.7 -0.7 128 4-136 283-412 (490)
10 KOG0472 Leucine-rich repeat pr 99.4 8.1E-16 1.8E-20 101.4 -6.3 126 6-136 161-288 (565)
11 KOG0472 Leucine-rich repeat pr 99.4 8.1E-14 1.8E-18 92.2 0.9 114 20-136 426-541 (565)
12 KOG4237 Extracellular matrix p 99.3 5.3E-14 1.2E-18 92.6 -1.6 68 69-136 265-335 (498)
13 KOG0444 Cytoskeletal regulator 99.3 5.5E-14 1.2E-18 97.9 -1.7 129 4-135 54-185 (1255)
14 PLN03150 hypothetical protein; 99.3 1.2E-11 2.6E-16 88.0 9.2 105 7-112 420-527 (623)
15 KOG0618 Serine/threonine phosp 99.3 1.3E-13 2.8E-18 98.7 -1.0 127 5-134 359-487 (1081)
16 KOG0532 Leucine-rich repeat (L 99.3 1.3E-13 2.9E-18 94.4 -1.4 130 2-136 118-247 (722)
17 cd00116 LRR_RI Leucine-rich re 99.3 1.3E-12 2.7E-17 86.0 2.9 63 4-66 80-150 (319)
18 PF13855 LRR_8: Leucine rich r 99.3 4.9E-12 1.1E-16 63.7 4.3 61 5-65 1-61 (61)
19 PF14580 LRR_9: Leucine-rich r 99.3 2.6E-12 5.7E-17 77.4 3.8 107 25-136 15-126 (175)
20 cd00116 LRR_RI Leucine-rich re 99.3 6.9E-12 1.5E-16 82.5 5.5 132 5-136 137-291 (319)
21 PRK15387 E3 ubiquitin-protein 99.2 3.7E-11 8.1E-16 86.7 7.0 125 4-136 301-458 (788)
22 PLN03150 hypothetical protein; 99.2 6E-11 1.3E-15 84.5 7.5 88 2-89 439-526 (623)
23 KOG0618 Serine/threonine phosp 99.2 1.1E-12 2.5E-17 94.0 -1.2 106 29-136 359-465 (1081)
24 KOG4237 Extracellular matrix p 99.2 8.3E-13 1.8E-17 87.2 -3.6 129 6-135 68-200 (498)
25 PRK15370 E3 ubiquitin-protein 99.1 1.5E-10 3.2E-15 83.7 6.7 120 6-135 242-379 (754)
26 PF13855 LRR_8: Leucine rich r 99.1 4.3E-11 9.3E-16 60.2 2.8 60 29-89 1-60 (61)
27 PLN03210 Resistant to P. syrin 99.1 5.5E-10 1.2E-14 84.5 9.0 124 5-133 778-903 (1153)
28 KOG1909 Ran GTPase-activating 99.1 3.6E-11 7.9E-16 78.2 2.0 133 3-135 90-253 (382)
29 PRK15387 E3 ubiquitin-protein 99.1 6.8E-10 1.5E-14 80.3 7.9 32 7-42 224-255 (788)
30 PLN03210 Resistant to P. syrin 99.1 1.9E-09 4.2E-14 81.7 10.6 104 5-111 611-715 (1153)
31 PRK15370 E3 ubiquitin-protein 99.1 2.6E-09 5.5E-14 77.4 9.9 116 7-135 201-316 (754)
32 KOG0532 Leucine-rich repeat (L 99.0 3.7E-12 8E-17 87.5 -5.9 123 8-136 101-224 (722)
33 COG4886 Leucine-rich repeat (L 99.0 3.6E-10 7.9E-15 76.6 2.9 125 6-135 141-289 (394)
34 COG4886 Leucine-rich repeat (L 99.0 9.7E-10 2.1E-14 74.6 4.6 112 2-117 160-294 (394)
35 KOG1909 Ran GTPase-activating 98.8 1.6E-09 3.5E-14 70.7 1.6 133 3-135 155-310 (382)
36 COG5238 RNA1 Ran GTPase-activa 98.8 1E-08 2.2E-13 65.5 4.4 133 2-135 89-254 (388)
37 KOG1859 Leucine-rich repeat pr 98.8 5.5E-11 1.2E-15 84.2 -6.6 124 7-135 166-291 (1096)
38 KOG1259 Nischarin, modulator o 98.8 5.4E-09 1.2E-13 67.7 2.7 80 54-135 285-386 (490)
39 PF12799 LRR_4: Leucine Rich r 98.7 1.6E-08 3.4E-13 47.3 3.4 36 101-136 2-37 (44)
40 KOG1644 U2-associated snRNP A' 98.7 3E-08 6.5E-13 60.6 5.2 99 30-131 43-148 (233)
41 KOG1644 U2-associated snRNP A' 98.7 3.2E-08 6.9E-13 60.5 4.8 105 5-111 42-151 (233)
42 KOG0531 Protein phosphatase 1, 98.7 3.2E-09 6.8E-14 72.6 0.5 122 8-134 75-197 (414)
43 KOG3207 Beta-tubulin folding c 98.7 2.2E-09 4.7E-14 72.1 -0.4 59 77-135 245-313 (505)
44 KOG3207 Beta-tubulin folding c 98.7 2.8E-09 6.2E-14 71.5 -0.7 132 4-135 145-283 (505)
45 KOG0531 Protein phosphatase 1, 98.6 4.9E-09 1.1E-13 71.7 -0.6 107 2-114 92-200 (414)
46 KOG4579 Leucine-rich repeat (L 98.6 7.5E-09 1.6E-13 59.7 -0.9 84 30-116 54-139 (177)
47 PF12799 LRR_4: Leucine Rich r 98.5 2.4E-07 5.1E-12 43.2 3.4 36 6-42 2-37 (44)
48 KOG4658 Apoptotic ATPase [Sign 98.4 1.9E-07 4.1E-12 69.1 3.1 86 2-89 568-653 (889)
49 KOG2982 Uncharacterized conser 98.4 7.3E-08 1.6E-12 62.4 -0.1 85 4-89 70-157 (418)
50 KOG3665 ZYG-1-like serine/thre 98.3 4.7E-07 1E-11 65.5 3.8 128 5-135 122-262 (699)
51 KOG4658 Apoptotic ATPase [Sign 98.3 9.6E-07 2.1E-11 65.5 4.6 106 4-111 544-653 (889)
52 KOG1859 Leucine-rich repeat pr 98.3 2.9E-08 6.3E-13 70.9 -3.1 100 31-135 166-266 (1096)
53 KOG4579 Leucine-rich repeat (L 98.2 3.6E-08 7.8E-13 56.9 -3.0 106 28-135 26-135 (177)
54 KOG3665 ZYG-1-like serine/thre 98.2 9.8E-07 2.1E-11 63.9 2.5 105 29-133 122-230 (699)
55 KOG2739 Leucine-rich acidic nu 98.1 1.8E-06 3.9E-11 54.7 2.7 104 23-129 37-149 (260)
56 COG5238 RNA1 Ran GTPase-activa 98.1 9.5E-06 2.1E-10 52.3 5.8 111 25-136 88-227 (388)
57 KOG2982 Uncharacterized conser 98.0 4.9E-06 1.1E-10 54.2 3.3 135 2-136 94-262 (418)
58 PF13306 LRR_5: Leucine rich r 98.0 6.7E-05 1.4E-09 43.0 7.5 120 1-126 8-129 (129)
59 KOG2120 SCF ubiquitin ligase, 98.0 1.8E-07 4E-12 60.6 -4.1 34 98-131 311-346 (419)
60 KOG2120 SCF ubiquitin ligase, 98.0 5.8E-07 1.2E-11 58.4 -1.9 80 54-133 287-373 (419)
61 PRK15386 type III secretion pr 97.5 0.00082 1.8E-08 46.2 7.7 55 3-63 50-104 (426)
62 KOG2739 Leucine-rich acidic nu 97.4 0.00022 4.8E-09 45.5 3.1 39 4-42 64-104 (260)
63 KOG2123 Uncharacterized conser 97.3 9.6E-06 2.1E-10 52.4 -3.0 97 28-129 18-123 (388)
64 KOG2123 Uncharacterized conser 97.3 1.1E-05 2.5E-10 52.1 -3.1 83 4-90 18-100 (388)
65 PF13306 LRR_5: Leucine rich r 97.0 0.005 1.1E-07 35.2 6.5 106 22-132 5-112 (129)
66 PRK15386 type III secretion pr 97.0 0.0053 1.1E-07 42.4 6.8 98 25-134 48-167 (426)
67 PF00560 LRR_1: Leucine Rich R 96.8 0.00069 1.5E-08 26.5 1.1 12 7-18 2-13 (22)
68 PF13504 LRR_7: Leucine rich r 96.4 0.0025 5.4E-08 23.2 1.4 16 101-116 2-17 (17)
69 KOG1947 Leucine rich repeat pr 95.8 0.0024 5.1E-08 44.6 -0.2 62 51-112 241-307 (482)
70 PF13516 LRR_6: Leucine Rich r 95.2 0.004 8.7E-08 24.7 -0.3 16 5-20 2-17 (24)
71 smart00370 LRR Leucine-rich re 95.1 0.029 6.3E-07 22.6 2.2 21 100-120 2-22 (26)
72 smart00369 LRR_TYP Leucine-ric 95.1 0.029 6.3E-07 22.6 2.2 21 100-120 2-22 (26)
73 KOG3864 Uncharacterized conser 93.6 0.016 3.4E-07 36.2 -0.4 81 30-110 102-186 (221)
74 KOG4341 F-box protein containi 93.5 0.03 6.5E-07 38.7 0.7 106 27-132 318-435 (483)
75 KOG3864 Uncharacterized conser 93.1 0.021 4.4E-07 35.7 -0.5 75 55-130 103-183 (221)
76 KOG1947 Leucine rich repeat pr 92.9 0.13 2.7E-06 36.1 3.1 87 3-89 212-306 (482)
77 smart00368 LRR_RI Leucine rich 91.9 0.18 3.9E-06 20.7 1.8 13 123-135 2-14 (28)
78 smart00364 LRR_BAC Leucine-ric 91.8 0.15 3.3E-06 20.7 1.4 18 100-117 2-19 (26)
79 smart00365 LRR_SD22 Leucine-ri 90.0 0.38 8.3E-06 19.5 1.8 13 123-135 2-14 (26)
80 KOG4308 LRR-containing protein 88.9 0.0024 5.3E-08 44.9 -8.3 56 80-135 235-302 (478)
81 KOG3763 mRNA export factor TAP 87.9 0.44 9.5E-06 34.3 2.1 78 51-129 216-307 (585)
82 KOG4341 F-box protein containi 87.3 0.36 7.8E-06 33.7 1.4 110 26-135 291-413 (483)
83 KOG0473 Leucine-rich repeat pr 87.1 0.0096 2.1E-07 38.1 -5.6 57 7-65 44-100 (326)
84 KOG0473 Leucine-rich repeat pr 82.7 0.026 5.6E-07 36.3 -5.1 46 24-71 37-82 (326)
85 KOG3763 mRNA export factor TAP 79.5 2 4.4E-05 31.2 2.5 12 28-39 243-254 (585)
86 smart00367 LRR_CC Leucine-rich 78.8 1.7 3.8E-05 17.2 1.3 13 122-134 1-13 (26)
87 TIGR00864 PCC polycystin catio 52.3 11 0.00024 33.1 2.0 32 11-42 1-32 (2740)
88 TIGR00864 PCC polycystin catio 50.4 16 0.00034 32.3 2.5 32 35-66 1-32 (2740)
89 smart00446 LRRcap occurring C- 39.6 17 0.00037 14.7 0.7 15 118-132 8-22 (26)
90 KOG4242 Predicted myosin-I-bin 24.6 87 0.0019 23.1 2.6 59 7-65 216-280 (553)
91 TIGR02167 Liste_lipo_26 bacter 24.3 32 0.00069 13.7 0.3 12 120-131 3-14 (26)
92 PF07723 LRR_2: Leucine Rich R 21.2 28 0.0006 13.8 -0.2 7 103-109 3-9 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.74 E-value=2e-17 Score=122.12 Aligned_cols=62 Identities=40% Similarity=0.623 Sum_probs=27.3
Q ss_pred CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCc
Q 039528 5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFE 66 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 66 (136)
++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 201 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV 201 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc
Confidence 34444444444444444444444444444444444443334444444444444444444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.73 E-value=3.8e-17 Score=120.72 Aligned_cols=132 Identities=30% Similarity=0.430 Sum_probs=82.9
Q ss_pred CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528 3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV 82 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~ 82 (136)
.+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+.+|++|++++|.+.+..|.. +..+++|++
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~ 240 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNH 240 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCE
Confidence 4556666666666666666666666666666666666666566666666666666666666666555543 556666666
Q ss_pred EEeccceeeec-c-CCCCCccccEEEcCCCCC-CCCChhhhcCCCCcEEEcCCCcC
Q 039528 83 LVLSSTILVKT-E-NFLPTFQLKELGLANCSL-NVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 83 l~l~~~~~~~~-~-~~~~~~~L~~l~l~~n~~-~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
+++++|.+... + .+..+++|++|++++|.+ +.+|..+..+++|+.|++++|.+
T Consensus 241 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred EECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 66666654321 1 344555666666666666 45666666666666666666654
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.72 E-value=4.6e-20 Score=109.08 Aligned_cols=131 Identities=30% Similarity=0.401 Sum_probs=100.0
Q ss_pred CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcC-CCChHhhhcCccce
Q 039528 3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEG-PCPLSLLAHHSKLE 81 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~~l~ 81 (136)
.+.+|+.+++++|++. .+|..++.+++|+.|+++.|.+. ..|.+|+.++-|+.||++.|.+.. .+|.. |..+..|+
T Consensus 54 ~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgn-ff~m~tlr 130 (264)
T KOG0617|consen 54 ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGN-FFYMTTLR 130 (264)
T ss_pred Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcc-hhHHHHHH
Confidence 4566777777788777 67777778888888888777776 777788888888888888777743 34544 44677777
Q ss_pred EEEeccceeeecc-CCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528 82 VLVLSSTILVKTE-NFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 82 ~l~l~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
.+.+++|.+.-.+ ..+.+++|+.|.+++|.+-++|..++.+..|+.|++++|.++
T Consensus 131 alyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 131 ALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred HHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence 7777777665543 567778899999999998888999999999999999988764
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.69 E-value=4.9e-18 Score=116.19 Aligned_cols=132 Identities=26% Similarity=0.304 Sum_probs=103.9
Q ss_pred CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528 3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV 82 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~ 82 (136)
+++.|+.|++++|.|...-++...-+++|++|++++|+++...++.|..+..|+.|.+++|+++ .+...++.++++|+.
T Consensus 291 gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~ 369 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHK 369 (873)
T ss_pred ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhh
Confidence 5677778888888887766777777888888888888887666777777888888888888886 455567788888888
Q ss_pred EEecccee---eec--cCCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528 83 LVLSSTIL---VKT--ENFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 83 l~l~~~~~---~~~--~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l 135 (136)
||+..|.+ .++ .++..+++|+.|++.+|++.++|. ++..+..|+.||+.+|.+
T Consensus 370 LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 370 LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred hcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 88888765 222 256778899999999999988885 888999999999999876
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=3e-17 Score=97.27 Aligned_cols=128 Identities=28% Similarity=0.437 Sum_probs=112.6
Q ss_pred CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL 83 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l 83 (136)
+..++.+.++.|.++ ..|+.+..+.+|+.|++.+|+++ .+|..++.+++|++|+++.|++. ..|.. |+++|.|+.+
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprg-fgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRG-FGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccc-cCCCchhhhh
Confidence 345667889999999 67888899999999999999998 78999999999999999999997 67765 9999999999
Q ss_pred Eeccceeeec---cCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528 84 VLSSTILVKT---ENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 84 ~l~~~~~~~~---~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
|+++|...+. +.+..+..|+.|++++|.+..+|..++++++|+.|.+..|.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCch
Confidence 9999776443 356677799999999999999999999999999999998875
No 6
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.59 E-value=3.5e-15 Score=89.80 Aligned_cols=122 Identities=28% Similarity=0.333 Sum_probs=53.6
Q ss_pred CCcccEEEcCCCcccccCccccc-CCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLK-YLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV 82 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~ 82 (136)
...+++|++.+|.++. + +.+. .+.+|+.|++++|.++.. +++..+++|+.|++++|+++ .++......+++|++
T Consensus 18 ~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred cccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence 4457899999999984 3 3344 578999999999999843 46788999999999999998 565444457899999
Q ss_pred EEeccceeeeccC---CCCCccccEEEcCCCCCCCCCh----hhhcCCCCcEEEc
Q 039528 83 LVLSSTILVKTEN---FLPTFQLKELGLANCSLNVVPT----FLLHQYDLKYLDL 130 (136)
Q Consensus 83 l~l~~~~~~~~~~---~~~~~~L~~l~l~~n~~~~~~~----~~~~~~~L~~l~l 130 (136)
+++++|.+.+... ...+++|+.|++.+|++.+.+. .++.+|+|+.||-
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 9999998876653 3567799999999999965554 6889999999884
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.58 E-value=1.6e-15 Score=104.15 Aligned_cols=132 Identities=27% Similarity=0.366 Sum_probs=93.1
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
.++++|+++.+.+|.++ .+|.......+++.|++.+|.|+..-.+.+..++.++.+|+++|.++ .++...+..-.+++
T Consensus 99 ~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIK 176 (873)
T ss_pred hcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCce
Confidence 34555555555555555 44443333444666666666665555566677778888888888887 55655566667788
Q ss_pred EEEeccceeeecc--CCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528 82 VLVLSSTILVKTE--NFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 82 ~l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l 135 (136)
+|+++.|.+++.+ .|..+.+|.+|.+++|+++.+|. .|+.+++|+.|++.-|.+
T Consensus 177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred EEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence 8888888887775 56666689999999999988886 566699999999887765
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.47 E-value=1.1e-14 Score=101.36 Aligned_cols=130 Identities=31% Similarity=0.435 Sum_probs=91.6
Q ss_pred CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL 83 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l 83 (136)
+..|..||++.|.+. +.|..+.....+-.|++++|+|..+...-+-++..|.+||+++|++. .+|.+ ...+..|+++
T Consensus 102 l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ-~RRL~~LqtL 178 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQ-IRRLSMLQTL 178 (1255)
T ss_pred cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHH-HHHHhhhhhh
Confidence 556777788888777 67777777777777777777776443344556777778888888776 55544 6667777777
Q ss_pred Eeccceeeecc---------------------------CCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528 84 VLSSTILVKTE---------------------------NFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 84 ~l~~~~~~~~~---------------------------~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
++++|+..... ....+.+|..++++.|.+..+|+.++.+++|+.|++|+|.++
T Consensus 179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCcee
Confidence 77776542211 112223667778888888889999999999999999999874
No 9
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.46 E-value=5.4e-15 Score=94.74 Aligned_cols=128 Identities=23% Similarity=0.308 Sum_probs=108.9
Q ss_pred CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL 83 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l 83 (136)
+..|+++|+++|.++ .+..++.-.|.++.|+++.|.+... +.+..+++|+.||+++|.++ .+..+ -..+.+++++
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gw-h~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGW-HLKLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhh-HhhhcCEeee
Confidence 456889999999999 7888888899999999999998743 55888999999999999997 44433 4457889999
Q ss_pred EeccceeeeccCCCCCccccEEEcCCCCCCCCC--hhhhcCCCCcEEEcCCCcCC
Q 039528 84 VLSSTILVKTENFLPTFQLKELGLANCSLNVVP--TFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~ 136 (136)
.+++|.+.+......+.+|..|++.+|+|..+. ..+++++.|+.+.+.+|+++
T Consensus 358 ~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 358 KLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 999999988887888889999999999996554 37899999999999999874
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.43 E-value=8.1e-16 Score=101.44 Aligned_cols=126 Identities=28% Similarity=0.327 Sum_probs=83.1
Q ss_pred cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEe
Q 039528 6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL 85 (136)
Q Consensus 6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l 85 (136)
++..+++.+|.+....|..+ ++.+|++++..+|-+. .+|+.++.+.+|..|++.+|++. +.| + |.++..|.++++
T Consensus 161 ~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-e-f~gcs~L~Elh~ 235 (565)
T KOG0472|consen 161 KLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-E-FPGCSLLKELHV 235 (565)
T ss_pred HHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-C-CCccHHHHHHHh
Confidence 34445555565553223332 3666666666666554 66667777777777777777776 555 2 666667777777
Q ss_pred ccceeeeccC--CCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528 86 SSTILVKTEN--FLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 86 ~~~~~~~~~~--~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
+.|.+...++ ...+.++.+||++.|++.++|..+..+++|++||+|+|.++
T Consensus 236 g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 236 GENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDIS 288 (565)
T ss_pred cccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccc
Confidence 7776655542 24566777888888888888887777888888888887764
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.38 E-value=8.1e-14 Score=92.20 Aligned_cols=114 Identities=30% Similarity=0.406 Sum_probs=84.9
Q ss_pred cCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeecc--CCC
Q 039528 20 HLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTE--NFL 97 (136)
Q Consensus 20 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~ 97 (136)
..|..++.+++|..|++++|.+. -+|..++.+..||.++++.|+|. -+|. ....+..++++-.++|.+...+ ...
T Consensus 426 fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~-~~y~lq~lEtllas~nqi~~vd~~~l~ 502 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPE-CLYELQTLETLLASNNQIGSVDPSGLK 502 (565)
T ss_pred cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchH-HHhhHHHHHHHHhccccccccChHHhh
Confidence 45556677778888888887776 56777777777888888888776 4553 3444444555555555554443 346
Q ss_pred CCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528 98 PTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 98 ~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
.+..|.+|++.+|.+.++|..+++|.++++|++++|+|.
T Consensus 503 nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 503 NMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 677999999999999999999999999999999999874
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.35 E-value=5.3e-14 Score=92.63 Aligned_cols=68 Identities=28% Similarity=0.372 Sum_probs=43.1
Q ss_pred CChHhhhcCccceEEEeccceeeecc--CCCCCccccEEEcCCCCCCCCC-hhhhcCCCCcEEEcCCCcCC
Q 039528 69 CPLSLLAHHSKLEVLVLSSTILVKTE--NFLPTFQLKELGLANCSLNVVP-TFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 69 ~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~ 136 (136)
.|...|+.+++|+.+++++|.++.+. +|.....++.|.+..|++..+. .++..+.+|+.|++++|.++
T Consensus 265 cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 265 CPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred ChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence 34445566677777777777665543 4455556666666666664433 36667777778888877764
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.35 E-value=5.5e-14 Score=97.94 Aligned_cols=129 Identities=28% Similarity=0.319 Sum_probs=96.5
Q ss_pred CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccc-cccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLS-GSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV 82 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~ 82 (136)
+.+|++|.+..|.+. .+...++.+|.|+.+.+..|++. .-+|..+..+..|..+|+++|++. ..|.. +...+++..
T Consensus 54 lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~-LE~AKn~iV 130 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTN-LEYAKNSIV 130 (1255)
T ss_pred HhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchh-hhhhcCcEE
Confidence 445666666777666 34455667777777777776653 235566667888888888888887 56755 667788888
Q ss_pred EEeccceeeecc--CCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528 83 LVLSSTILVKTE--NFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 83 l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
+++++|.+..++ .+..+..|-.|++++|++..+|+.+..+..|++|++++|++
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChh
Confidence 889888887776 34566678888999999988898888888899999998875
No 14
>PLN03150 hypothetical protein; Provisional
Probab=99.33 E-value=1.2e-11 Score=88.00 Aligned_cols=105 Identities=30% Similarity=0.497 Sum_probs=74.3
Q ss_pred ccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEec
Q 039528 7 LFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLS 86 (136)
Q Consensus 7 L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~ 86 (136)
++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|.. +..+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECc
Confidence 566778888888777877888888888888888887777777888888888888888887777754 6777788888887
Q ss_pred cceee-eccC-CCC-CccccEEEcCCCCC
Q 039528 87 STILV-KTEN-FLP-TFQLKELGLANCSL 112 (136)
Q Consensus 87 ~~~~~-~~~~-~~~-~~~L~~l~l~~n~~ 112 (136)
+|.+. ..+. +.. ...+..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 76543 2221 111 12445666666654
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.32 E-value=1.3e-13 Score=98.71 Aligned_cols=127 Identities=34% Similarity=0.394 Sum_probs=87.2
Q ss_pred CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528 5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV 84 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~ 84 (136)
+.|+.|.+.+|.+++..-+.+.++.+|+.|++++|++.......+.++..|+.|++++|+++ .+| .....++.|+++.
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp-~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLP-DTVANLGRLHTLR 436 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhh-HHHHhhhhhHHHh
Confidence 44566677777777777677777777777777777776444445667777777777777776 566 3466777777777
Q ss_pred eccceeeeccCCCCCccccEEEcCCCCCC--CCChhhhcCCCCcEEEcCCCc
Q 039528 85 LSSTILVKTENFLPTFQLKELGLANCSLN--VVPTFLLHQYDLKYLDLSHNN 134 (136)
Q Consensus 85 l~~~~~~~~~~~~~~~~L~~l~l~~n~~~--~~~~~~~~~~~L~~l~l~~n~ 134 (136)
..+|.+...|.+..++.|+.+|++.|.++ .+|.... .++|++||++||.
T Consensus 437 ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 437 AHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred hcCCceeechhhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence 77777766666666777788888887773 3332222 3678888887775
No 16
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.31 E-value=1.3e-13 Score=94.41 Aligned_cols=130 Identities=31% Similarity=0.398 Sum_probs=103.4
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
+++..|..++++.|+++ .+|..++.|| |+.|-+++|+++ .+|..++....|..+|.+.|.+. ++|.. +..+.+++
T Consensus 118 ~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsq-l~~l~slr 192 (722)
T KOG0532|consen 118 CNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQ-LGYLTSLR 192 (722)
T ss_pred hhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHH-hhhHHHHH
Confidence 34566777888888888 6777777776 788888888876 67777777788888888888887 56654 77788888
Q ss_pred EEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528 82 VLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 82 ~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
.+.+..|.....+.-...-.|..||+++|++..+|..|.+++.|++|.+.+|+++
T Consensus 193 ~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 193 DLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred HHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence 8888888776665322244789999999999999999999999999999999874
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.30 E-value=1.3e-12 Score=86.04 Aligned_cols=63 Identities=29% Similarity=0.308 Sum_probs=29.0
Q ss_pred CCcccEEEcCCCcccccCcccccCCCc---ccEEEccCCcccc----ccchhhhcc-CCCCEEEccCCcCc
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLKYLSH---LKVFDISQNQLSG----SLSSTITSL-TSLEYLDLSYNNFE 66 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~~l~~---L~~L~l~~~~~~~----~~~~~~~~~-~~l~~l~l~~~~~~ 66 (136)
+++|+.+++++|.+.+..+..+..+.+ |++|++++|.+.+ .....+..+ ++++.+++++|.++
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 345555555555554333333333333 5555555555441 111222333 45555555555554
No 18
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.30 E-value=4.9e-12 Score=63.71 Aligned_cols=61 Identities=34% Similarity=0.550 Sum_probs=48.3
Q ss_pred CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcC
Q 039528 5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNF 65 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~ 65 (136)
|+|++|++++|.++...+..|.++++|+++++++|.++...++.|..+++|+++++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678888888888866667788888888888888888766667788888888888887764
No 19
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.30 E-value=2.6e-12 Score=77.43 Aligned_cols=107 Identities=25% Similarity=0.264 Sum_probs=41.4
Q ss_pred ccCCCcccEEEccCCccccccchhhh-ccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccC-C-CCCcc
Q 039528 25 LKYLSHLKVFDISQNQLSGSLSSTIT-SLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTEN-F-LPTFQ 101 (136)
Q Consensus 25 ~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~-~~~~~ 101 (136)
+.+..++++|++++|.++.+ +.++ .+.+|+.|++++|.++ .+. .+..++.|+.|++++|.+..... + ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S-CHHHHHH-TT
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCCccccchHHhCCc
Confidence 34566789999999999743 4555 5789999999999998 444 37789999999999999987742 2 34679
Q ss_pred ccEEEcCCCCCCCCC--hhhhcCCCCcEEEcCCCcCC
Q 039528 102 LKELGLANCSLNVVP--TFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 102 L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~ 136 (136)
|+.|++++|++.++. ..++.+++|+.|++.+|+++
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 999999999995544 47789999999999999874
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.28 E-value=6.9e-12 Score=82.55 Aligned_cols=132 Identities=27% Similarity=0.337 Sum_probs=78.4
Q ss_pred CcccEEEcCCCccccc----CcccccCCCcccEEEccCCccccc----cchhhhccCCCCEEEccCCcCcCCCCh---Hh
Q 039528 5 KNLFELNLKGNNVEGH----LPNCLKYLSHLKVFDISQNQLSGS----LSSTITSLTSLEYLDLSYNNFEGPCPL---SL 73 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~l~~l~l~~~~~~~~~~~---~~ 73 (136)
++|+.+++++|.+++. ++..+..+++|++|++++|.+++. ++..+...++|++|++++|.+.+.... ..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 5667777777776632 233445566777777777766532 223344455777777777776532211 12
Q ss_pred hhcCccceEEEeccceeeecc--C-----CCCCccccEEEcCCCCCC-----CCChhhhcCCCCcEEEcCCCcCC
Q 039528 74 LAHHSKLEVLVLSSTILVKTE--N-----FLPTFQLKELGLANCSLN-----VVPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 74 ~~~~~~l~~l~l~~~~~~~~~--~-----~~~~~~L~~l~l~~n~~~-----~~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
+..+++|+++++++|.+.+.. . ......|+.|++.+|.++ .+...+..+++|+++++++|.++
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 445667788888777665421 0 112357788888887774 23335556677888888887763
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.22 E-value=3.7e-11 Score=86.65 Aligned_cols=125 Identities=27% Similarity=0.300 Sum_probs=81.4
Q ss_pred CCcccEEEcCCCccccc--Cccccc----------C---C-CcccEEEccCCccccccchhhh-----------------
Q 039528 4 LKNLFELNLKGNNVEGH--LPNCLK----------Y---L-SHLKVFDISQNQLSGSLSSTIT----------------- 50 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~--~~~~~~----------~---l-~~L~~L~l~~~~~~~~~~~~~~----------------- 50 (136)
+++|+.|++++|.+.+. .|..+. . + .+|++|++++|.++. +|....
T Consensus 301 p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~ 379 (788)
T PRK15387 301 PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPA 379 (788)
T ss_pred ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCC-CCCCCcccceehhhccccccCcc
Confidence 36777777777777642 111111 1 1 267788888887763 332111
Q ss_pred ccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEc
Q 039528 51 SLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDL 130 (136)
Q Consensus 51 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l 130 (136)
...+|+.|++++|.+. .+|. ..++|+.|++++|.+...+.. ...|+.|++++|.++.+|..+..+++++.+++
T Consensus 380 l~~~L~~LdLs~N~Lt-~LP~----l~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 380 LPSGLKELIVSGNRLT-SLPV----LPSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNL 452 (788)
T ss_pred cccccceEEecCCccc-CCCC----cccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCcccccChHHhhccCCCeEEC
Confidence 1134666666666665 3442 134677777777776655433 33688889999999889999999999999999
Q ss_pred CCCcCC
Q 039528 131 SHNNLV 136 (136)
Q Consensus 131 ~~n~l~ 136 (136)
++|+++
T Consensus 453 s~N~Ls 458 (788)
T PRK15387 453 EGNPLS 458 (788)
T ss_pred CCCCCC
Confidence 999875
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.21 E-value=6e-11 Score=84.55 Aligned_cols=88 Identities=30% Similarity=0.520 Sum_probs=77.3
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++.+|........++.
T Consensus 439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~ 518 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA 518 (623)
T ss_pred hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999976333335667
Q ss_pred EEEeccce
Q 039528 82 VLVLSSTI 89 (136)
Q Consensus 82 ~l~l~~~~ 89 (136)
.+++.+|.
T Consensus 519 ~l~~~~N~ 526 (623)
T PLN03150 519 SFNFTDNA 526 (623)
T ss_pred eEEecCCc
Confidence 78888764
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.21 E-value=1.1e-12 Score=93.99 Aligned_cols=106 Identities=31% Similarity=0.343 Sum_probs=82.6
Q ss_pred CcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeecc-CCCCCccccEEEc
Q 039528 29 SHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTE-NFLPTFQLKELGL 107 (136)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~~L~~l~l 107 (136)
+.|+.|++.+|.++...-..+.+++.|+.|++++|++. .+|++.+..+..|+++++++|.....+ ....+..|++|..
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh
Confidence 45666777777776666566677888888888888886 677777888888888888888876665 2345557888888
Q ss_pred CCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528 108 ANCSLNVVPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 108 ~~n~~~~~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
-.|.+..+| .+..+++|+.+|+++|.++
T Consensus 438 hsN~l~~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 438 HSNQLLSFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred cCCceeech-hhhhcCcceEEecccchhh
Confidence 888888888 7888999999999999874
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.16 E-value=8.3e-13 Score=87.16 Aligned_cols=129 Identities=22% Similarity=0.267 Sum_probs=106.4
Q ss_pred cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEc-cCCcCcCCCChHhhhcCccceEEE
Q 039528 6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL-SYNNFEGPCPLSLLAHHSKLEVLV 84 (136)
Q Consensus 6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l-~~~~~~~~~~~~~~~~~~~l~~l~ 84 (136)
....+.+..|.|+...+.+|..+++|+.+++++|+|+.+.|++|..+.++..|-+ ++|+++ .+++..|..+..++.+.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence 3567899999999877889999999999999999999999999999998866554 558898 78888899999998888
Q ss_pred eccceeee--ccCCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528 85 LSSTILVK--TENFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 85 l~~~~~~~--~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l 135 (136)
+.-|.+.- ..++..++++..|.+.+|.+..++. .+..+..++.+++.-|++
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcc
Confidence 88776532 2366777888999999999977775 777788888888877763
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.14 E-value=1.5e-10 Score=83.70 Aligned_cols=120 Identities=27% Similarity=0.379 Sum_probs=66.0
Q ss_pred cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhh-----------
Q 039528 6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLL----------- 74 (136)
Q Consensus 6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~----------- 74 (136)
.|+.|++++|.+. .+|..+. ..|+.|++++|.++ .+|..+. .+|+.|++++|+++ .+|....
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N 314 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLPSGITHLNVQSN 314 (754)
T ss_pred cccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccchhhHHHHHhcCC
Confidence 4667777777766 4454432 35666677666665 3444332 35666666666665 2221100
Q ss_pred -------hcCccceEEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528 75 -------AHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 75 -------~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
...++|+.|++++|.+...+... .++|+.|++++|.++.+|..+. ++|+.|++++|.+
T Consensus 315 ~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l-~~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~L 379 (754)
T PRK15370 315 SLTALPETLPPGLKTLEAGENALTSLPASL-PPELQVLDVSKNQITVLPETLP--PTITTLDVSRNAL 379 (754)
T ss_pred ccccCCccccccceeccccCCccccCChhh-cCcccEEECCCCCCCcCChhhc--CCcCEEECCCCcC
Confidence 01134566666665554433211 2367777777777766665442 4677777777765
No 26
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.13 E-value=4.3e-11 Score=60.24 Aligned_cols=60 Identities=32% Similarity=0.447 Sum_probs=45.8
Q ss_pred CcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccce
Q 039528 29 SHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTI 89 (136)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 89 (136)
|+|++|++++|.++...+..|..+++|+++++++|.++ .++...+..+++|+++++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCc
Confidence 46788888888887666667788888888888888887 4554567778888888877764
No 27
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.11 E-value=5.5e-10 Score=84.54 Aligned_cols=124 Identities=25% Similarity=0.213 Sum_probs=71.3
Q ss_pred CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528 5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV 84 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~ 84 (136)
++|+.|++++|.....+|..+.++++|+.|++++|..-..+|... .+++|+.|++++|.....+|. ...+++.++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~----~~~nL~~L~ 852 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD----ISTNISDLN 852 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc----cccccCEeE
Confidence 356666666665554566666666667777666654323444443 456666666666544333331 124566666
Q ss_pred eccceeeecc-CCCCCccccEEEcCCCC-CCCCChhhhcCCCCcEEEcCCC
Q 039528 85 LSSTILVKTE-NFLPTFQLKELGLANCS-LNVVPTFLLHQYDLKYLDLSHN 133 (136)
Q Consensus 85 l~~~~~~~~~-~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~L~~l~l~~n 133 (136)
+++|.+...+ .+..+++|+.|++.+|. +..+|..+..++.|+.+++++|
T Consensus 853 Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 853 LSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 6666665544 23445567777776644 3556666666666666666654
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.10 E-value=3.6e-11 Score=78.20 Aligned_cols=133 Identities=18% Similarity=0.137 Sum_probs=94.1
Q ss_pred CCCcccEEEcCCCcccccCccc----ccCCCcccEEEccCCccccccc-------------hhhhccCCCCEEEccCCcC
Q 039528 3 ELKNLFELNLKGNNVEGHLPNC----LKYLSHLKVFDISQNQLSGSLS-------------STITSLTSLEYLDLSYNNF 65 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~-------------~~~~~~~~l~~l~l~~~~~ 65 (136)
.+++|+++++|+|.+....++. ++++..|++|++++|.+.-... .....-+.|+++..++|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 4678999999999998665554 4668899999999998751111 1123356789999999998
Q ss_pred cCCCC---hHhhhcCccceEEEeccceeeecc------CCCCCccccEEEcCCCCCCC-----CChhhhcCCCCcEEEcC
Q 039528 66 EGPCP---LSLLAHHSKLEVLVLSSTILVKTE------NFLPTFQLKELGLANCSLNV-----VPTFLLHQYDLKYLDLS 131 (136)
Q Consensus 66 ~~~~~---~~~~~~~~~l~~l~l~~~~~~~~~------~~~~~~~L~~l~l~~n~~~~-----~~~~~~~~~~L~~l~l~ 131 (136)
..... +..++..+.++.+.+..|.+.+.+ ++..++.|+.|++++|-++. +...+..++.|+.++++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 52211 225667788888888888876654 34667788888888888832 33456677778888777
Q ss_pred CCcC
Q 039528 132 HNNL 135 (136)
Q Consensus 132 ~n~l 135 (136)
.|.+
T Consensus 250 dcll 253 (382)
T KOG1909|consen 250 DCLL 253 (382)
T ss_pred cccc
Confidence 7654
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.08 E-value=6.8e-10 Score=80.34 Aligned_cols=32 Identities=31% Similarity=0.540 Sum_probs=16.1
Q ss_pred ccEEEcCCCcccccCcccccCCCcccEEEccCCccc
Q 039528 7 LFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLS 42 (136)
Q Consensus 7 L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 42 (136)
++.|++.+|.++. +|. ..++|++|++++|+++
T Consensus 224 L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt 255 (788)
T PRK15387 224 ITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT 255 (788)
T ss_pred CCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC
Confidence 4555555555552 332 1345555555555554
No 30
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.08 E-value=1.9e-09 Score=81.66 Aligned_cols=104 Identities=27% Similarity=0.291 Sum_probs=49.0
Q ss_pred CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528 5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV 84 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~ 84 (136)
.+|+.|++.++.+. .++..+..+++|+.++++++.....+| .+..+++|+.|++.+|.....+|.. +..+++|+.++
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~ 687 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLD 687 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEe
Confidence 34555555555554 334444555555555555543222333 2444555555555555443344433 44555555555
Q ss_pred eccc-eeeeccCCCCCccccEEEcCCCC
Q 039528 85 LSST-ILVKTENFLPTFQLKELGLANCS 111 (136)
Q Consensus 85 l~~~-~~~~~~~~~~~~~L~~l~l~~n~ 111 (136)
++++ .+...+....+.+|+.|++++|.
T Consensus 688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 688 MSRCENLEILPTGINLKSLYRLNLSGCS 715 (1153)
T ss_pred CCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence 5552 23333322233445555555443
No 31
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.05 E-value=2.6e-09 Score=77.44 Aligned_cols=116 Identities=26% Similarity=0.377 Sum_probs=48.9
Q ss_pred ccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEec
Q 039528 7 LFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLS 86 (136)
Q Consensus 7 L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~ 86 (136)
++.|++++|.++ .+|..+. .+|++|++++|.++ .+|..+. ..|+.|++++|.+. .+|.. + ..+|+.|+++
T Consensus 201 L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~-l--~s~L~~L~Ls 270 (754)
T PRK15370 201 ITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPER-L--PSALQSLDLF 270 (754)
T ss_pred CcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChh-H--hCCCCEEECc
Confidence 444444444444 2332221 24445555544444 2333221 23455555555544 33322 1 1245555555
Q ss_pred cceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528 87 STILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 87 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
+|.+...+... ..+|+.|++++|.++.+|..+. .+|+.|++++|.+
T Consensus 271 ~N~L~~LP~~l-~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~L 316 (754)
T PRK15370 271 HNKISCLPENL-PEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSL 316 (754)
T ss_pred CCccCcccccc-CCCCcEEECCCCccccCcccch--hhHHHHHhcCCcc
Confidence 55444332110 1245555555555544443222 2345555555543
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.00 E-value=3.7e-12 Score=87.53 Aligned_cols=123 Identities=26% Similarity=0.290 Sum_probs=94.9
Q ss_pred cEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEecc
Q 039528 8 FELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSS 87 (136)
Q Consensus 8 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~ 87 (136)
+.+.+..|.+. .+|.+++++..|.+++++.|+++ .+|..+..++ |+.+.+++|+++ .+|.. ++....+..++.+.
T Consensus 101 e~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~-ig~~~tl~~ld~s~ 175 (722)
T KOG0532|consen 101 ESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEE-IGLLPTLAHLDVSK 175 (722)
T ss_pred HHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcc-cccchhHHHhhhhh
Confidence 33445555555 56777788888888888888887 6777775554 788888888886 66655 66778888899888
Q ss_pred ceeeecc-CCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528 88 TILVKTE-NFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 88 ~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
|.+...+ ..+.+.+|+.|.++.|.+..+|..+..++ |..||+|+|.++
T Consensus 176 nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis 224 (722)
T KOG0532|consen 176 NEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKIS 224 (722)
T ss_pred hhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCcee
Confidence 8776554 45777789999999999999999888554 999999999874
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.97 E-value=3.6e-10 Score=76.65 Aligned_cols=125 Identities=38% Similarity=0.463 Sum_probs=67.1
Q ss_pred cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEe
Q 039528 6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL 85 (136)
Q Consensus 6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l 85 (136)
+|+.+++++|.+. .++..+..++.|+.|+++.|+++ ..+......+.+..+++++|++. .+|.. ......|.++.+
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~-~~~~~~L~~l~~ 216 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPE-IELLSALEELDL 216 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchh-hhhhhhhhhhhh
Confidence 4566666666665 34444556666666666666665 33333335555666666666665 33321 122233444444
Q ss_pred ccc-----------------------eeeec-cCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528 86 SST-----------------------ILVKT-ENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 86 ~~~-----------------------~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
++| .+... .....+..+++|++++|.+++++. ++...+++.+++++|.+
T Consensus 217 ~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 217 SNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred cCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc-ccccCccCEEeccCccc
Confidence 444 33321 122334456677777777766655 66666777777776654
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.96 E-value=9.7e-10 Score=74.60 Aligned_cols=112 Identities=33% Similarity=0.432 Sum_probs=75.5
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchh-----------------------hhccCCCCEE
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSST-----------------------ITSLTSLEYL 58 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-----------------------~~~~~~l~~l 58 (136)
..++.|+.|++++|.+. .++......+.|+.|++++|.++ .+|.. +..+.++..+
T Consensus 160 ~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l 237 (394)
T COG4886 160 RNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGL 237 (394)
T ss_pred hccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhccccccc
Confidence 35777888888888887 45554446777777777777765 33332 2233344444
Q ss_pred EccCCcCcCCCChHhhhcCccceEEEeccceeeeccCCCCCccccEEEcCCCCCCCCCh
Q 039528 59 DLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPT 117 (136)
Q Consensus 59 ~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 117 (136)
.+.+|+.. ..+ .....++.++.+++++|.+.+........+++.++++++.+...+.
T Consensus 238 ~l~~n~~~-~~~-~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 238 ELSNNKLE-DLP-ESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccCCceee-ecc-chhccccccceeccccccccccccccccCccCEEeccCccccccch
Confidence 44444443 212 2366778899999999999888777777899999999999854443
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.81 E-value=1.6e-09 Score=70.74 Aligned_cols=133 Identities=23% Similarity=0.262 Sum_probs=101.0
Q ss_pred CCCcccEEEcCCCccccc----CcccccCCCcccEEEccCCcccc----ccchhhhccCCCCEEEccCCcCcCCCC---h
Q 039528 3 ELKNLFELNLKGNNVEGH----LPNCLKYLSHLKVFDISQNQLSG----SLSSTITSLTSLEYLDLSYNNFEGPCP---L 71 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~~~----~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~l~~l~l~~~~~~~~~~---~ 71 (136)
+-+.|+++..++|.+... +...|..++.|+.+.+..|.|.. ....++..++.|+.||+.+|.++.... +
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 457799999999998754 33456778999999999887752 234567789999999999999963221 2
Q ss_pred HhhhcCccceEEEeccceeeeccC------C-CCCccccEEEcCCCCCCC-----CChhhhcCCCCcEEEcCCCcC
Q 039528 72 SLLAHHSKLEVLVLSSTILVKTEN------F-LPTFQLKELGLANCSLNV-----VPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 72 ~~~~~~~~l~~l~l~~~~~~~~~~------~-~~~~~L~~l~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n~l 135 (136)
..+..+++|+.++++++.+.+.++ + ...++|+.+.+.+|.++. +...+...+.|+.|++++|.+
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 246678899999999988766652 1 446799999999999932 333556678899999999987
No 36
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.78 E-value=1e-08 Score=65.51 Aligned_cols=133 Identities=17% Similarity=0.227 Sum_probs=96.9
Q ss_pred CCCCcccEEEcCCCcccccCccc----ccCCCcccEEEccCCcccc----ccchhh---------hccCCCCEEEccCCc
Q 039528 2 CELKNLFELNLKGNNVEGHLPNC----LKYLSHLKVFDISQNQLSG----SLSSTI---------TSLTSLEYLDLSYNN 64 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~----~~~l~~L~~L~l~~~~~~~----~~~~~~---------~~~~~l~~l~l~~~~ 64 (136)
..||+++.+++++|.+....|+. ++....|.+|.+++|.+.- .+..++ ..-+.|+.+.+.+|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 46899999999999998776654 4677889999999997741 111111 235789999999999
Q ss_pred CcCCCChH----hhhcCccceEEEeccceeeecc-------CCCCCccccEEEcCCCCCCC-----CChhhhcCCCCcEE
Q 039528 65 FEGPCPLS----LLAHHSKLEVLVLSSTILVKTE-------NFLPTFQLKELGLANCSLNV-----VPTFLLHQYDLKYL 128 (136)
Q Consensus 65 ~~~~~~~~----~~~~~~~l~~l~l~~~~~~~~~-------~~~~~~~L~~l~l~~n~~~~-----~~~~~~~~~~L~~l 128 (136)
+. ..+.. .+.+.-.++.+.+..|++.+.+ ....+.+|+.|++++|.++. +..++..|+.|+.|
T Consensus 169 le-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 169 LE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 96 33332 2334457899999999998775 12445589999999999842 33466778888888
Q ss_pred EcCCCcC
Q 039528 129 DLSHNNL 135 (136)
Q Consensus 129 ~l~~n~l 135 (136)
.+..|-+
T Consensus 248 ~lnDCll 254 (388)
T COG5238 248 RLNDCLL 254 (388)
T ss_pred cccchhh
Confidence 8887755
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.77 E-value=5.5e-11 Score=84.19 Aligned_cols=124 Identities=26% Similarity=0.273 Sum_probs=80.7
Q ss_pred ccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEec
Q 039528 7 LFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLS 86 (136)
Q Consensus 7 L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~ 86 (136)
|...++++|.+. .+..++.-++.++.|++++|+++.. +.+..++.|.+||++.|.+. .+|. +-..-..|..|.+.
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~-l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQ-LSMVGCKLQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccc-cchhhhhheeeeec
Confidence 555667777776 5666666677777778877777633 36677777788888777776 3442 11122337777777
Q ss_pred cceeeeccCCCCCccccEEEcCCCCCCCCC--hhhhcCCCCcEEEcCCCcC
Q 039528 87 STILVKTENFLPTFQLKELGLANCSLNVVP--TFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 87 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l 135 (136)
+|-.+.......+.+|+.||+++|-+.... ..++.+..|+.|.+.+|++
T Consensus 241 nN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 776666655556667777777777773222 3556666777777777765
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.76 E-value=5.4e-09 Score=67.73 Aligned_cols=80 Identities=33% Similarity=0.277 Sum_probs=38.9
Q ss_pred CCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccCCCCCccccEEEcCCCCCCCCCh----------------
Q 039528 54 SLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPT---------------- 117 (136)
Q Consensus 54 ~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~---------------- 117 (136)
.|..+|+++|.++ .+..+ .+-+|+++.+++++|++...+....+++|+.|++++|.++++..
T Consensus 285 ~LtelDLS~N~I~-~iDES-vKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDES-VKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhhccccccchh-hhhhh-hhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence 3444555555544 22222 33445555555555555444444444455555555554432222
Q ss_pred ------hhhcCCCCcEEEcCCCcC
Q 039528 118 ------FLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 118 ------~~~~~~~L~~l~l~~n~l 135 (136)
.+.++.+|..||+++|.+
T Consensus 363 ~iE~LSGL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 363 KIETLSGLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred hHhhhhhhHhhhhheeccccccch
Confidence 344555666677766654
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.75 E-value=1.6e-08 Score=47.28 Aligned_cols=36 Identities=33% Similarity=0.456 Sum_probs=27.0
Q ss_pred cccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528 101 QLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 101 ~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
+|++|++++|.++++|..++++++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 577888888888888777788888888888888764
No 40
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.73 E-value=3e-08 Score=60.58 Aligned_cols=99 Identities=19% Similarity=0.242 Sum_probs=50.1
Q ss_pred cccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeecc---CCCCCccccEEE
Q 039528 30 HLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTE---NFLPTFQLKELG 106 (136)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~---~~~~~~~L~~l~ 106 (136)
+...+++.+|.+.. .+.|..+++|.+|.++.|+++ .+....-..++.+..|.+.+|.+...+ ....+++|+.|.
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 44455555555431 234455555666666666655 222233334455566666665543332 234444566666
Q ss_pred cCCCCCCCCCh----hhhcCCCCcEEEcC
Q 039528 107 LANCSLNVVPT----FLLHQYDLKYLDLS 131 (136)
Q Consensus 107 l~~n~~~~~~~----~~~~~~~L~~l~l~ 131 (136)
+-+|.++..+. +++.+++|+.||++
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehh
Confidence 66666543332 45556666666654
No 41
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.71 E-value=3.2e-08 Score=60.46 Aligned_cols=105 Identities=22% Similarity=0.247 Sum_probs=81.5
Q ss_pred CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528 5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV 84 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~ 84 (136)
.+...+|+++|.+.. . ..|..++.|++|.+++|.|+.+.|.--..++++..|.+.+|.+..-........+|+|+.+.
T Consensus 42 d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 456778999998873 2 34678899999999999999776666666788999999999997433334477899999999
Q ss_pred eccceeeecc-----CCCCCccccEEEcCCCC
Q 039528 85 LSSTILVKTE-----NFLPTFQLKELGLANCS 111 (136)
Q Consensus 85 l~~~~~~~~~-----~~~~~~~L~~l~l~~n~ 111 (136)
+-+|.+.... ..+..+++++||.+.-.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 9999887665 33667789999876543
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.71 E-value=3.2e-09 Score=72.64 Aligned_cols=122 Identities=28% Similarity=0.338 Sum_probs=65.9
Q ss_pred cEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEecc
Q 039528 8 FELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSS 87 (136)
Q Consensus 8 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~ 87 (136)
+.+.+..|.+.. .-..+..+.+++.+++.+|.+.. +...+..+++|++|++++|.++...+ +..++.|+.|++.+
T Consensus 75 ~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 75 KELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG---LSTLTLLKELNLSG 149 (414)
T ss_pred Hhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc---hhhccchhhheecc
Confidence 334444444442 22234555666666666666652 22225556666666666666652222 44555566666666
Q ss_pred ceeeeccCCCCCccccEEEcCCCCCCCCChh-hhcCCCCcEEEcCCCc
Q 039528 88 TILVKTENFLPTFQLKELGLANCSLNVVPTF-LLHQYDLKYLDLSHNN 134 (136)
Q Consensus 88 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~ 134 (136)
|.+.....+..+..++.+++++|.+..+... ...+..++.+++.+|.
T Consensus 150 N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 150 NLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred CcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 6666665555555666666666666444432 3455555555555554
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2.2e-09 Score=72.08 Aligned_cols=59 Identities=25% Similarity=0.324 Sum_probs=37.3
Q ss_pred CccceEEEeccceeeecc---CCCCCccccEEEcCCCCCCC--CChh-----hhcCCCCcEEEcCCCcC
Q 039528 77 HSKLEVLVLSSTILVKTE---NFLPTFQLKELGLANCSLNV--VPTF-----LLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 77 ~~~l~~l~l~~~~~~~~~---~~~~~~~L~~l~l~~n~~~~--~~~~-----~~~~~~L~~l~l~~n~l 135 (136)
+..|+.|++++|.+.+.+ ....++.|+.|.++.|.+.+ .|+. ....++|++|+++.|++
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 455666777776655444 23555677777777777743 2332 34567788888888876
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.8e-09 Score=71.52 Aligned_cols=132 Identities=26% Similarity=0.249 Sum_probs=67.2
Q ss_pred CCcccEEEcCCCcccccCc--ccccCCCcccEEEccCCcccccc-chhhhccCCCCEEEccCCcCcCCCChHhhhcCccc
Q 039528 4 LKNLFELNLKGNNVEGHLP--NCLKYLSHLKVFDISQNQLSGSL-SSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKL 80 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~--~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l 80 (136)
|+.++.||++.|-+..+.+ .....+|+|+.|.++.|.+.... ...-..++.+..|.++.|.+++....+....+|++
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 4445555555555443322 22334555555555555443110 01111344455555555555533333344456666
Q ss_pred eEEEeccceeeecc--CCCCCccccEEEcCCCCCCCCC--hhhhcCCCCcEEEcCCCcC
Q 039528 81 EVLVLSSTILVKTE--NFLPTFQLKELGLANCSLNVVP--TFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 81 ~~l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l 135 (136)
..|++..|...... .......|+.|++++|.+-+.+ ..++.++.|..|+++.+.+
T Consensus 225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi 283 (505)
T KOG3207|consen 225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGI 283 (505)
T ss_pred HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCc
Confidence 66666666321111 1233446778888888774444 3667777777777776654
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.62 E-value=4.9e-09 Score=71.70 Aligned_cols=107 Identities=33% Similarity=0.404 Sum_probs=82.2
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
..+++++.+++.+|.+.. +...+..+++|++|++++|.|+.. .++..++.|+.|++.+|.+. .+. + +..++.++
T Consensus 92 ~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~-~~~-~-~~~l~~L~ 165 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLIS-DIS-G-LESLKSLK 165 (414)
T ss_pred ccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhheeccCcch-hcc-C-Cccchhhh
Confidence 356788999999999984 333367789999999999998754 45666777999999999997 333 2 55688899
Q ss_pred EEEeccceeeeccC--CCCCccccEEEcCCCCCCC
Q 039528 82 VLVLSSTILVKTEN--FLPTFQLKELGLANCSLNV 114 (136)
Q Consensus 82 ~l~l~~~~~~~~~~--~~~~~~L~~l~l~~n~~~~ 114 (136)
.+++++|.+..... ...+.+++.+++.+|.+..
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCCchhc
Confidence 99999988877765 3666688888888887744
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.56 E-value=7.5e-09 Score=59.70 Aligned_cols=84 Identities=20% Similarity=0.242 Sum_probs=36.5
Q ss_pred cccEEEccCCccccccchhhh-ccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeecc-CCCCCccccEEEc
Q 039528 30 HLKVFDISQNQLSGSLSSTIT-SLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTE-NFLPTFQLKELGL 107 (136)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~~L~~l~l 107 (136)
.|...++++|.+. ..|..|. .++....+++.+|.++ .+|.+ +..++.|+.++++.|.+...+ .+.++.++..|+.
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHH-HhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 3444455555544 2333332 2234444555555554 34444 445555555555554443322 1222334444444
Q ss_pred CCCCCCCCC
Q 039528 108 ANCSLNVVP 116 (136)
Q Consensus 108 ~~n~~~~~~ 116 (136)
.+|.+..++
T Consensus 131 ~~na~~eid 139 (177)
T KOG4579|consen 131 PENARAEID 139 (177)
T ss_pred CCCccccCc
Confidence 444443333
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.49 E-value=2.4e-07 Score=43.25 Aligned_cols=36 Identities=39% Similarity=0.610 Sum_probs=19.2
Q ss_pred cccEEEcCCCcccccCcccccCCCcccEEEccCCccc
Q 039528 6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLS 42 (136)
Q Consensus 6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 42 (136)
+|++|++++|.++ .+|+.+..+++|++|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4556666666665 33444555666666666665554
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.42 E-value=1.9e-07 Score=69.09 Aligned_cols=86 Identities=31% Similarity=0.429 Sum_probs=67.7
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
..++.|++||+++|.-.+.+|..++.+-+|++|+++++.++ .+|.++..+..|++|++..+.....++ .....+++|+
T Consensus 568 ~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr 645 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLR 645 (889)
T ss_pred hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccccccccc-chhhhccccc
Confidence 45788888999887766688888888999999999888887 788888888889999888777654443 4455688888
Q ss_pred EEEeccce
Q 039528 82 VLVLSSTI 89 (136)
Q Consensus 82 ~l~l~~~~ 89 (136)
++.+....
T Consensus 646 ~L~l~~s~ 653 (889)
T KOG4658|consen 646 VLRLPRSA 653 (889)
T ss_pred EEEeeccc
Confidence 88877743
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=7.3e-08 Score=62.39 Aligned_cols=85 Identities=25% Similarity=0.279 Sum_probs=64.4
Q ss_pred CCcccEEEcCCCccccc--CcccccCCCcccEEEccCCccccccchhh-hccCCCCEEEccCCcCcCCCChHhhhcCccc
Q 039528 4 LKNLFELNLKGNNVEGH--LPNCLKYLSHLKVFDISQNQLSGSLSSTI-TSLTSLEYLDLSYNNFEGPCPLSLLAHHSKL 80 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l 80 (136)
...++++|+.+|.++++ +...+.++|.+++|+++.|.+.. ..+.+ -...+++.+.+++..+.+....+....+|.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s-~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS-DIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC-ccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45577889999998864 23455789999999999998763 22333 3667889999999888776666667788899
Q ss_pred eEEEeccce
Q 039528 81 EVLVLSSTI 89 (136)
Q Consensus 81 ~~l~l~~~~ 89 (136)
+.++++.|.
T Consensus 149 telHmS~N~ 157 (418)
T KOG2982|consen 149 TELHMSDNS 157 (418)
T ss_pred hhhhhccch
Confidence 999888873
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.35 E-value=4.7e-07 Score=65.48 Aligned_cols=128 Identities=22% Similarity=0.293 Sum_probs=88.6
Q ss_pred CcccEEEcCCCccc-ccCcccc-cCCCcccEEEccCCcccc-ccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 5 KNLFELNLKGNNVE-GHLPNCL-KYLSHLKVFDISQNQLSG-SLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 5 ~~L~~l~l~~~~l~-~~~~~~~-~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
.+|+.|++++...- ..++..+ .-+|+|+.|.+.+..+.. ........+++|..||++++.++ .+ +..+.+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc--HHHhccccHH
Confidence 35788888775442 2334333 458999999998876642 22334457889999999999987 33 3477889999
Q ss_pred EEEeccceeeecc---CCCCCccccEEEcCCCCCCCCCh-------hhhcCCCCcEEEcCCCcC
Q 039528 82 VLVLSSTILVKTE---NFLPTFQLKELGLANCSLNVVPT-------FLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 82 ~l~l~~~~~~~~~---~~~~~~~L~~l~l~~n~~~~~~~-------~~~~~~~L~~l~l~~n~l 135 (136)
.|.+.+=.+..-. ....+.+|+.||++.......+. .-..+++|+.||.|++.+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 9888774443322 45678899999999887743332 123478999999998765
No 51
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.31 E-value=9.6e-07 Score=65.49 Aligned_cols=106 Identities=29% Similarity=0.303 Sum_probs=68.1
Q ss_pred CCcccEEEcCCCc--ccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 4 LKNLFELNLKGNN--VEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 4 l~~L~~l~l~~~~--l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
.+.|+.|-+.+|. +.......|..++.|+.||+++|.--+.+|..++.+.+|++|++.++.+. .+|.. ++.+.+|.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~-l~~Lk~L~ 621 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSG-LGNLKKLI 621 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchH-HHHHHhhh
Confidence 3456666666664 33233344666778888888776544577777777888888888777776 56654 66777778
Q ss_pred EEEeccceeeec--cCCCCCccccEEEcCCCC
Q 039528 82 VLVLSSTILVKT--ENFLPTFQLKELGLANCS 111 (136)
Q Consensus 82 ~l~l~~~~~~~~--~~~~~~~~L~~l~l~~n~ 111 (136)
+|++..+..... .....+.+|++|.+....
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccc
Confidence 877777543222 223446677777775554
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.30 E-value=2.9e-08 Score=70.95 Aligned_cols=100 Identities=31% Similarity=0.305 Sum_probs=75.4
Q ss_pred ccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccCC-CCCccccEEEcCC
Q 039528 31 LKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENF-LPTFQLKELGLAN 109 (136)
Q Consensus 31 L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~l~l~~ 109 (136)
|.+.+.+.|.+. .+-..+.-++.++.|++++|+++ .. ..+..+++|++||+++|..+..+.+ ...++|..|.+++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hh--HHHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence 334444444443 44456677888999999999997 33 3588999999999999988776644 3445799999999
Q ss_pred CCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528 110 CSLNVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 110 n~~~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
|.++.+. .+.++++|+.||++.|-+
T Consensus 242 N~l~tL~-gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 242 NALTTLR-GIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred cHHHhhh-hHHhhhhhhccchhHhhh
Confidence 9997764 567889999999998865
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.25 E-value=3.6e-08 Score=56.95 Aligned_cols=106 Identities=22% Similarity=0.261 Sum_probs=72.3
Q ss_pred CCcccEEEccCCccccccchhhh---ccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeecc-CCCCCcccc
Q 039528 28 LSHLKVFDISQNQLSGSLSSTIT---SLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTE-NFLPTFQLK 103 (136)
Q Consensus 28 l~~L~~L~l~~~~~~~~~~~~~~---~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~~L~ 103 (136)
-..++.+++++|++- .+++... ....|...++++|.+. ..|..+-...+.++++++.+|.+.+.+ .+..++.|+
T Consensus 26 akE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr 103 (177)
T KOG4579|consen 26 AKELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALR 103 (177)
T ss_pred HHHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhh
Confidence 345667777777664 3344433 3445566678888887 456555555667888888888776665 345666888
Q ss_pred EEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528 104 ELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 104 ~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
.++++.|.+...|..+..+.++-.|+..+|.+
T Consensus 104 ~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 104 SLNLRFNPLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred hcccccCccccchHHHHHHHhHHHhcCCCCcc
Confidence 88888888877777777777777777776653
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.19 E-value=9.8e-07 Score=63.90 Aligned_cols=105 Identities=26% Similarity=0.274 Sum_probs=78.0
Q ss_pred CcccEEEccCCcc-ccccchhhh-ccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccCCCCCccccEEE
Q 039528 29 SHLKVFDISQNQL-SGSLSSTIT-SLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELG 106 (136)
Q Consensus 29 ~~L~~L~l~~~~~-~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~ 106 (136)
.+|++|++++... ....+..++ -+|+|+.|.+.+-.+...--.....++|+|..||++++.+.+......+.+|++|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 4688888877532 222233333 47899999998877753222345678899999999999888887778888999999
Q ss_pred cCCCCCCCCC--hhhhcCCCCcEEEcCCC
Q 039528 107 LANCSLNVVP--TFLLHQYDLKYLDLSHN 133 (136)
Q Consensus 107 l~~n~~~~~~--~~~~~~~~L~~l~l~~n 133 (136)
+++-.+..-. ..+..+++|+.||+|..
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 9988884423 47888999999999864
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.14 E-value=1.8e-06 Score=54.70 Aligned_cols=104 Identities=26% Similarity=0.328 Sum_probs=71.9
Q ss_pred ccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCC--cCcCCCChHhhhcCccceEEEeccceeeeccCC---C
Q 039528 23 NCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN--NFEGPCPLSLLAHHSKLEVLVLSSTILVKTENF---L 97 (136)
Q Consensus 23 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~--~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~---~ 97 (136)
........|+.+.+.+..++.. ..+..+++|+.|.++.| +..+.++.- ...+|+++++++++|.+++.... .
T Consensus 37 gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~ 113 (260)
T KOG2739|consen 37 GLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLK 113 (260)
T ss_pred cccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhh
Confidence 3344456677777777666532 45677889999999999 444444432 34559999999999998876544 3
Q ss_pred CCccccEEEcCCCCCCCCCh----hhhcCCCCcEEE
Q 039528 98 PTFQLKELGLANCSLNVVPT----FLLHQYDLKYLD 129 (136)
Q Consensus 98 ~~~~L~~l~l~~n~~~~~~~----~~~~~~~L~~l~ 129 (136)
...+|..|++.+|..+.+.. ++.-+++|+++|
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 44468889999998855443 455667777765
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.14 E-value=9.5e-06 Score=52.31 Aligned_cols=111 Identities=26% Similarity=0.303 Sum_probs=67.7
Q ss_pred ccCCCcccEEEccCCccccccchh----hhccCCCCEEEccCCcCcCCCChHh-------------hhcCccceEEEecc
Q 039528 25 LKYLSHLKVFDISQNQLSGSLSST----ITSLTSLEYLDLSYNNFEGPCPLSL-------------LAHHSKLEVLVLSS 87 (136)
Q Consensus 25 ~~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~l~~l~l~~~~~~~~~~~~~-------------~~~~~~l~~l~l~~ 87 (136)
+..||+++..++++|.+....|.. +.....+.+|.+++|.+- +..... .+.-|.|+.+..+.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 456777777777777765444433 345566777777776652 221111 12345677777777
Q ss_pred ceeeeccC------CCCCccccEEEcCCCCCCC--CC----hhhhcCCCCcEEEcCCCcCC
Q 039528 88 TILVKTEN------FLPTFQLKELGLANCSLNV--VP----TFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 88 ~~~~~~~~------~~~~~~L~~l~l~~n~~~~--~~----~~~~~~~~L~~l~l~~n~l~ 136 (136)
|+....+. +..-..+.++.++.|.|.. +. ..++.+.+|+.||++.|.+|
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 76655441 1222367788888888732 11 13456889999999999875
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=4.9e-06 Score=54.22 Aligned_cols=135 Identities=21% Similarity=0.207 Sum_probs=86.0
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccch-hhhccCCCCEEEccCCcCcC-----C-------
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSS-TITSLTSLEYLDLSYNNFEG-----P------- 68 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~-----~------- 68 (136)
.++|.|+.|+++.|++...+...-....+|+.+-+++..+.+.... .+..++.++.+.++.|.+.. .
T Consensus 94 e~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~ 173 (418)
T KOG2982|consen 94 EQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWST 173 (418)
T ss_pred hcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccch
Confidence 4689999999999999854332224667899999999887654433 34567778888888773320 0
Q ss_pred ---------CChHhh-------hcCccceEEEeccceeeecc---CCCCCccccEEEcCCCCCCCCC--hhhhcCCCCcE
Q 039528 69 ---------CPLSLL-------AHHSKLEVLVLSSTILVKTE---NFLPTFQLKELGLANCSLNVVP--TFLLHQYDLKY 127 (136)
Q Consensus 69 ---------~~~~~~-------~~~~~l~~l~l~~~~~~~~~---~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~ 127 (136)
.+...| ...|++..+-+..+++.+.. .....+.+..|.++-+.+.++. +++.++++++.
T Consensus 174 ~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~d 253 (418)
T KOG2982|consen 174 EVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVD 253 (418)
T ss_pred hhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhhe
Confidence 011111 12345555555555554432 2233446667788888886654 37788888888
Q ss_pred EEcCCCcCC
Q 039528 128 LDLSHNNLV 136 (136)
Q Consensus 128 l~l~~n~l~ 136 (136)
|.++++++.
T Consensus 254 lRv~~~Pl~ 262 (418)
T KOG2982|consen 254 LRVSENPLS 262 (418)
T ss_pred eeccCCccc
Confidence 888888763
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.02 E-value=6.7e-05 Score=43.04 Aligned_cols=120 Identities=17% Similarity=0.249 Sum_probs=57.6
Q ss_pred CCCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccc
Q 039528 1 LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKL 80 (136)
Q Consensus 1 ~~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l 80 (136)
|.++.+|+.+.+.. .+.......|.++.+++.+.+..+ +.......|..+.+++.+.+.. ... .++...+..++++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccccc
Confidence 34566788888774 455555667888888888888765 5544445667777788888865 332 2344456677888
Q ss_pred eEEEeccceee-eccCCCCCccccEEEcCCCCCCCCC-hhhhcCCCCc
Q 039528 81 EVLVLSSTILV-KTENFLPTFQLKELGLANCSLNVVP-TFLLHQYDLK 126 (136)
Q Consensus 81 ~~l~l~~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~ 126 (136)
+.+.+..+... ....+... .++.+.+.. .+..++ .++..+++|+
T Consensus 84 ~~i~~~~~~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 84 KNIDIPSNITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp CEEEETTT-BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccccCccccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 88888665222 22244444 777777654 444444 3666666653
No 59
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=1.8e-07 Score=60.63 Aligned_cols=34 Identities=24% Similarity=0.164 Sum_probs=15.9
Q ss_pred CCccccEEEcCCCCC--CCCChhhhcCCCCcEEEcC
Q 039528 98 PTFQLKELGLANCSL--NVVPTFLLHQYDLKYLDLS 131 (136)
Q Consensus 98 ~~~~L~~l~l~~n~~--~~~~~~~~~~~~L~~l~l~ 131 (136)
.++.+.+||+++|.. ...-.++.+++-|+++.++
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 344555555555443 2222344455555555554
No 60
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=5.8e-07 Score=58.40 Aligned_cols=80 Identities=25% Similarity=0.210 Sum_probs=48.7
Q ss_pred CCCEEEccCCcC--cCCCChHhhhcCccceEEEeccc-eeeecc--CCCCCccccEEEcCCCCC--CCCChhhhcCCCCc
Q 039528 54 SLEYLDLSYNNF--EGPCPLSLLAHHSKLEVLVLSST-ILVKTE--NFLPTFQLKELGLANCSL--NVVPTFLLHQYDLK 126 (136)
Q Consensus 54 ~l~~l~l~~~~~--~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~--~~~~~~~L~~l~l~~n~~--~~~~~~~~~~~~L~ 126 (136)
.+..|++++++- ...+-+...+.+|++.++|++++ .+.+.. ++...+-|+++.++.|.- -..--.+...+.|.
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~ 366 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLV 366 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceE
Confidence 344455554432 11222334567889999999995 344422 456666889999888763 11122567788888
Q ss_pred EEEcCCC
Q 039528 127 YLDLSHN 133 (136)
Q Consensus 127 ~l~l~~n 133 (136)
+|++.++
T Consensus 367 yLdv~g~ 373 (419)
T KOG2120|consen 367 YLDVFGC 373 (419)
T ss_pred EEEeccc
Confidence 8887654
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.53 E-value=0.00082 Score=46.18 Aligned_cols=55 Identities=24% Similarity=0.244 Sum_probs=34.7
Q ss_pred CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCC
Q 039528 3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~ 63 (136)
.+.+++.|++++|.+. .+|. -.++|+.|.+++|.--...|+.+ ..+|+.|++++|
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 3577889999998877 4452 12358888887753322455444 246777777766
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.35 E-value=0.00022 Score=45.51 Aligned_cols=39 Identities=33% Similarity=0.456 Sum_probs=18.5
Q ss_pred CCcccEEEcCCC--cccccCcccccCCCcccEEEccCCccc
Q 039528 4 LKNLFELNLKGN--NVEGHLPNCLKYLSHLKVFDISQNQLS 42 (136)
Q Consensus 4 l~~L~~l~l~~~--~l~~~~~~~~~~l~~L~~L~l~~~~~~ 42 (136)
+++|+.|.++.| ++.+.++.....+|+|+++.+++|++.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 444555555555 333333333344455555555555443
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=9.6e-06 Score=52.43 Aligned_cols=97 Identities=23% Similarity=0.204 Sum_probs=70.6
Q ss_pred CCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccCC---CCCccccE
Q 039528 28 LSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENF---LPTFQLKE 104 (136)
Q Consensus 28 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~---~~~~~L~~ 104 (136)
+...+.|+.-+|.+.++ .....|+.|+.|.++-|+++ ++. .+..+++|+++.+..|.+.+.... ..+++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 44555666666666543 34457889999999999997 443 377899999999999988777633 67779999
Q ss_pred EEcCCCCC-CCCC-h----hhhcCCCCcEEE
Q 039528 105 LGLANCSL-NVVP-T----FLLHQYDLKYLD 129 (136)
Q Consensus 105 l~l~~n~~-~~~~-~----~~~~~~~L~~l~ 129 (136)
|++..|.- +.-+ . .+..+++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99998886 3322 2 567788888876
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=1.1e-05 Score=52.11 Aligned_cols=83 Identities=25% Similarity=0.269 Sum_probs=65.9
Q ss_pred CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL 83 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l 83 (136)
+...++|+..++.+.+. .....++.|+.|.++-|.|+.. ..+..+.+|+.|++..|.+...-....++.+|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45677889999998854 3346789999999999999744 5577899999999999999743334567889999999
Q ss_pred Eecccee
Q 039528 84 VLSSTIL 90 (136)
Q Consensus 84 ~l~~~~~ 90 (136)
++..|+-
T Consensus 94 WL~ENPC 100 (388)
T KOG2123|consen 94 WLDENPC 100 (388)
T ss_pred hhccCCc
Confidence 9999764
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.05 E-value=0.005 Score=35.17 Aligned_cols=106 Identities=13% Similarity=0.232 Sum_probs=62.0
Q ss_pred cccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEecccee-eeccCCCCCc
Q 039528 22 PNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTIL-VKTENFLPTF 100 (136)
Q Consensus 22 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~~~~~~ 100 (136)
..+|.++.+|+.+.+.. .+..+....|..+.+++.+.+..+ +. .++...+..++.++.+.+..+.. .+...+..+.
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccccccccccccccccc
Confidence 35678888999999875 455455677888889999999875 54 45656788888899999976432 2223566677
Q ss_pred cccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCC
Q 039528 101 QLKELGLANCSLNVVPT-FLLHQYDLKYLDLSH 132 (136)
Q Consensus 101 ~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~ 132 (136)
.++.+.+..+ +..++. .+..+ +++.+.+..
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 9999998664 544443 55565 788887764
No 66
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.96 E-value=0.0053 Score=42.37 Aligned_cols=98 Identities=18% Similarity=0.133 Sum_probs=59.4
Q ss_pred ccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccc-eeeeccCCCCCcccc
Q 039528 25 LKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSST-ILVKTENFLPTFQLK 103 (136)
Q Consensus 25 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~~L~ 103 (136)
+..+.++..|++++|.++ .+|. ...+|+.|.+.++.-...+|.. + .++|+.|++.++ .+... +..|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sL-----P~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGL-----PESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccc-----ccccc
Confidence 445789999999999887 4552 2346999999875443355532 2 257888888876 33221 22566
Q ss_pred EEEcCCCCC---CCCChhhhcC------------------CCCcEEEcCCCc
Q 039528 104 ELGLANCSL---NVVPTFLLHQ------------------YDLKYLDLSHNN 134 (136)
Q Consensus 104 ~l~l~~n~~---~~~~~~~~~~------------------~~L~~l~l~~n~ 134 (136)
.|++.++.. ..+|..+..+ .+|++|++++|.
T Consensus 116 ~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~ 167 (426)
T PRK15386 116 SLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCS 167 (426)
T ss_pred eEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCC
Confidence 666655442 4555433222 257777776654
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.83 E-value=0.00069 Score=26.47 Aligned_cols=12 Identities=50% Similarity=0.656 Sum_probs=6.1
Q ss_pred ccEEEcCCCccc
Q 039528 7 LFELNLKGNNVE 18 (136)
Q Consensus 7 L~~l~l~~~~l~ 18 (136)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 445555555554
No 68
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.43 E-value=0.0025 Score=23.21 Aligned_cols=16 Identities=38% Similarity=0.650 Sum_probs=7.0
Q ss_pred cccEEEcCCCCCCCCC
Q 039528 101 QLKELGLANCSLNVVP 116 (136)
Q Consensus 101 ~L~~l~l~~n~~~~~~ 116 (136)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666655543
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.75 E-value=0.0024 Score=44.56 Aligned_cols=62 Identities=27% Similarity=0.211 Sum_probs=27.9
Q ss_pred ccCCCCEEEccCCc-CcCCCChHhhhcCccceEEEeccce-eeecc---CCCCCccccEEEcCCCCC
Q 039528 51 SLTSLEYLDLSYNN-FEGPCPLSLLAHHSKLEVLVLSSTI-LVKTE---NFLPTFQLKELGLANCSL 112 (136)
Q Consensus 51 ~~~~l~~l~l~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~---~~~~~~~L~~l~l~~n~~ 112 (136)
.+.+++.++++.+. ++...-......+++|+++.+..+. +.+.+ ....++.|++|+++.|..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 34555666665555 3322111222235566666644443 23222 113334566666665554
No 70
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.21 E-value=0.004 Score=24.69 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=7.0
Q ss_pred CcccEEEcCCCccccc
Q 039528 5 KNLFELNLKGNNVEGH 20 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~ 20 (136)
++|+.|++++|.+++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4455555555555443
No 71
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.11 E-value=0.029 Score=22.56 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=16.1
Q ss_pred ccccEEEcCCCCCCCCChhhh
Q 039528 100 FQLKELGLANCSLNVVPTFLL 120 (136)
Q Consensus 100 ~~L~~l~l~~n~~~~~~~~~~ 120 (136)
..|++|++.+|.+..+|....
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 467888999998888886443
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.11 E-value=0.029 Score=22.56 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=16.1
Q ss_pred ccccEEEcCCCCCCCCChhhh
Q 039528 100 FQLKELGLANCSLNVVPTFLL 120 (136)
Q Consensus 100 ~~L~~l~l~~n~~~~~~~~~~ 120 (136)
..|++|++.+|.+..+|....
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 467888999998888886443
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.58 E-value=0.016 Score=36.15 Aligned_cols=81 Identities=20% Similarity=0.162 Sum_probs=42.7
Q ss_pred cccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhh-hcCccceEEEecccee-eecc--CCCCCccccEE
Q 039528 30 HLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLL-AHHSKLEVLVLSSTIL-VKTE--NFLPTFQLKEL 105 (136)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~-~~~~~l~~l~l~~~~~-~~~~--~~~~~~~L~~l 105 (136)
.++.++.+++.|..+..+.+..+++++.+.+.++..-+.-..... ...++|+.|++++|.. ++.+ -....++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 456666666666655556666666666666666554322111111 1335677777776543 3332 11344456655
Q ss_pred EcCCC
Q 039528 106 GLANC 110 (136)
Q Consensus 106 ~l~~n 110 (136)
.+++-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 55443
No 74
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=93.52 E-value=0.03 Score=38.70 Aligned_cols=106 Identities=25% Similarity=0.230 Sum_probs=49.1
Q ss_pred CCCcccEEEccCCc-cccccchhh-hccCCCCEEEccCCcCcCCC-ChHhhhcCccceEEEeccce-eeecc------CC
Q 039528 27 YLSHLKVFDISQNQ-LSGSLSSTI-TSLTSLEYLDLSYNNFEGPC-PLSLLAHHSKLEVLVLSSTI-LVKTE------NF 96 (136)
Q Consensus 27 ~l~~L~~L~l~~~~-~~~~~~~~~-~~~~~l~~l~l~~~~~~~~~-~~~~~~~~~~l~~l~l~~~~-~~~~~------~~ 96 (136)
++++|+++.++.++ ++......+ .+++.|+.+++......... -.+...+++.++.+.++.+. +++.+ ..
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 35566666666553 222211111 23445555555444331111 11233455666666666532 23321 11
Q ss_pred CCCccccEEEcCCCCC-C-CCChhhhcCCCCcEEEcCC
Q 039528 97 LPTFQLKELGLANCSL-N-VVPTFLLHQYDLKYLDLSH 132 (136)
Q Consensus 97 ~~~~~L~~l~l~~n~~-~-~~~~~~~~~~~L~~l~l~~ 132 (136)
.....++.+.+++++. + ..-..+..+++|+.+++..
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID 435 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence 3333566666666665 2 2223456666777666544
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.09 E-value=0.021 Score=35.66 Aligned_cols=75 Identities=21% Similarity=0.184 Sum_probs=30.4
Q ss_pred CCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeecc----CCCCCccccEEEcCCCC-CCCCC-hhhhcCCCCcEE
Q 039528 55 LEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTE----NFLPTFQLKELGLANCS-LNVVP-TFLLHQYDLKYL 128 (136)
Q Consensus 55 l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~----~~~~~~~L~~l~l~~n~-~~~~~-~~~~~~~~L~~l 128 (136)
++.+|.++..+... ...-+..+++++.+.+..+.-.+.. .....++|+.|++++|. |++-. ..+.++++|+.|
T Consensus 103 IeaVDAsds~I~~e-Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIMYE-GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCchHHHH-HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 44455554444311 1122444444555544443322211 01123355555555544 23322 234445555444
Q ss_pred Ec
Q 039528 129 DL 130 (136)
Q Consensus 129 ~l 130 (136)
++
T Consensus 182 ~l 183 (221)
T KOG3864|consen 182 HL 183 (221)
T ss_pred Hh
Confidence 44
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.91 E-value=0.13 Score=36.05 Aligned_cols=87 Identities=25% Similarity=0.182 Sum_probs=48.9
Q ss_pred CCCcccEEEcCCC-cccccC----cccccCCCcccEEEccCCc-cccccchhhh-ccCCCCEEEccCCc-CcCCCChHhh
Q 039528 3 ELKNLFELNLKGN-NVEGHL----PNCLKYLSHLKVFDISQNQ-LSGSLSSTIT-SLTSLEYLDLSYNN-FEGPCPLSLL 74 (136)
Q Consensus 3 ~l~~L~~l~l~~~-~l~~~~----~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~-~~~~l~~l~l~~~~-~~~~~~~~~~ 74 (136)
.+++|+.++++.+ ...... ......+++|+.++++.+. ++...-..+. .+++|+.|.+.++. ++...-....
T Consensus 212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~ 291 (482)
T KOG1947|consen 212 KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIA 291 (482)
T ss_pred hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHH
Confidence 3566777777652 111111 1233456777788877766 5543333333 26778888766665 4433333345
Q ss_pred hcCccceEEEeccce
Q 039528 75 AHHSKLEVLVLSSTI 89 (136)
Q Consensus 75 ~~~~~l~~l~l~~~~ 89 (136)
..++.|++++++++.
T Consensus 292 ~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 292 ERCPSLRELDLSGCH 306 (482)
T ss_pred HhcCcccEEeeecCc
Confidence 566778888888743
No 77
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=91.92 E-value=0.18 Score=20.73 Aligned_cols=13 Identities=54% Similarity=0.669 Sum_probs=8.3
Q ss_pred CCCcEEEcCCCcC
Q 039528 123 YDLKYLDLSHNNL 135 (136)
Q Consensus 123 ~~L~~l~l~~n~l 135 (136)
++|++|++++|.+
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 3566677776665
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=91.75 E-value=0.15 Score=20.70 Aligned_cols=18 Identities=39% Similarity=0.547 Sum_probs=15.0
Q ss_pred ccccEEEcCCCCCCCCCh
Q 039528 100 FQLKELGLANCSLNVVPT 117 (136)
Q Consensus 100 ~~L~~l~l~~n~~~~~~~ 117 (136)
..|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 367889999999988886
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=89.99 E-value=0.38 Score=19.52 Aligned_cols=13 Identities=46% Similarity=0.675 Sum_probs=7.6
Q ss_pred CCCcEEEcCCCcC
Q 039528 123 YDLKYLDLSHNNL 135 (136)
Q Consensus 123 ~~L~~l~l~~n~l 135 (136)
.+|+.|+++.|.+
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 3456666666654
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.90 E-value=0.0024 Score=44.94 Aligned_cols=56 Identities=29% Similarity=0.249 Sum_probs=31.9
Q ss_pred ceEEEeccceeeecc------CCCCC-ccccEEEcCCCCCC-----CCChhhhcCCCCcEEEcCCCcC
Q 039528 80 LEVLVLSSTILVKTE------NFLPT-FQLKELGLANCSLN-----VVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 80 l~~l~l~~~~~~~~~------~~~~~-~~L~~l~l~~n~~~-----~~~~~~~~~~~L~~l~l~~n~l 135 (136)
+..+++..|.+.+.. .+..+ ..++.+++..|.++ .+...+.+++.++.+.+++|++
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 444555555554442 11222 35677777777773 2344566666777777777765
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=87.88 E-value=0.44 Score=34.34 Aligned_cols=78 Identities=26% Similarity=0.224 Sum_probs=44.1
Q ss_pred ccCCCCEEEccCCcCcCCCC--hHhhhcCccceEEEeccc--eeeeccCC--CCCccccEEEcCCCCC-CCCC---hh--
Q 039528 51 SLTSLEYLDLSYNNFEGPCP--LSLLAHHSKLEVLVLSST--ILVKTENF--LPTFQLKELGLANCSL-NVVP---TF-- 118 (136)
Q Consensus 51 ~~~~l~~l~l~~~~~~~~~~--~~~~~~~~~l~~l~l~~~--~~~~~~~~--~~~~~L~~l~l~~n~~-~~~~---~~-- 118 (136)
+.+.+..+.+++|++. .+. .......|++..|+|++| .+...... .....|++|.+.+|++ +... ..
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 4566777778887774 221 123445678888888887 33333222 2233678888888887 3221 12
Q ss_pred --hhcCCCCcEEE
Q 039528 119 --LLHQYDLKYLD 129 (136)
Q Consensus 119 --~~~~~~L~~l~ 129 (136)
....|+|..||
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 23556666655
No 82
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.33 E-value=0.36 Score=33.69 Aligned_cols=110 Identities=20% Similarity=0.134 Sum_probs=64.1
Q ss_pred cCCCcccEEEccCCc-cccccchhh-hccCCCCEEEccCCcCcCCCChH-hhhcCccceEEEeccceeeecc----CCCC
Q 039528 26 KYLSHLKVFDISQNQ-LSGSLSSTI-TSLTSLEYLDLSYNNFEGPCPLS-LLAHHSKLEVLVLSSTILVKTE----NFLP 98 (136)
Q Consensus 26 ~~l~~L~~L~l~~~~-~~~~~~~~~-~~~~~l~~l~l~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~----~~~~ 98 (136)
..+..||.+..+++. ++......+ ....+|+++.+.+++--+..... .-.+++.|+.+++......... ....
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 346778888877753 333222333 34678888888877632232222 2335677888888886543333 2244
Q ss_pred CccccEEEcCCCCC-CCC-----ChhhhcCCCCcEEEcCCCcC
Q 039528 99 TFQLKELGLANCSL-NVV-----PTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 99 ~~~L~~l~l~~n~~-~~~-----~~~~~~~~~L~~l~l~~n~l 135 (136)
++.++.+.++.|.. ++- .....+...++.+.+++++.
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL 413 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC
Confidence 55788888887765 332 11223455677777777654
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.13 E-value=0.0096 Score=38.11 Aligned_cols=57 Identities=23% Similarity=0.247 Sum_probs=22.1
Q ss_pred ccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcC
Q 039528 7 LFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNF 65 (136)
Q Consensus 7 L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~ 65 (136)
.+.||++.|.+- .....|+-+..+.-++++.|++. ..|..+.....+..++...|..
T Consensus 44 ~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~ 100 (326)
T KOG0473|consen 44 VTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNH 100 (326)
T ss_pred eeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccch
Confidence 334444444433 12222333344444444444443 3333333333333333333333
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.72 E-value=0.026 Score=36.25 Aligned_cols=46 Identities=33% Similarity=0.426 Sum_probs=25.3
Q ss_pred cccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCCh
Q 039528 24 CLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPL 71 (136)
Q Consensus 24 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 71 (136)
.+....+.+.+|++.|+.- ..-..|+.+.++..++++.|.+. ..|.
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~ 82 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPK 82 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChh
Confidence 3444555666666666543 33344555666666666666654 3443
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=79.48 E-value=2 Score=31.19 Aligned_cols=12 Identities=42% Similarity=0.659 Sum_probs=5.8
Q ss_pred CCcccEEEccCC
Q 039528 28 LSHLKVFDISQN 39 (136)
Q Consensus 28 l~~L~~L~l~~~ 39 (136)
.|.|..|++++|
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 444455555444
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=78.84 E-value=1.7 Score=17.20 Aligned_cols=13 Identities=38% Similarity=0.332 Sum_probs=8.8
Q ss_pred CCCCcEEEcCCCc
Q 039528 122 QYDLKYLDLSHNN 134 (136)
Q Consensus 122 ~~~L~~l~l~~n~ 134 (136)
+++|+.|+++++.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4567777777764
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=52.26 E-value=11 Score=33.12 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=25.9
Q ss_pred EcCCCcccccCcccccCCCcccEEEccCCccc
Q 039528 11 NLKGNNVEGHLPNCLKYLSHLKVFDISQNQLS 42 (136)
Q Consensus 11 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 42 (136)
||++|.|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57889998666678888999999999888653
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=50.37 E-value=16 Score=32.33 Aligned_cols=32 Identities=41% Similarity=0.477 Sum_probs=26.4
Q ss_pred EccCCccccccchhhhccCCCCEEEccCCcCc
Q 039528 35 DISQNQLSGSLSSTITSLTSLEYLDLSYNNFE 66 (136)
Q Consensus 35 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 66 (136)
+|++|+++.+.++.|..+++|+.|+|.+|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 47788888666677888999999999988874
No 89
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=39.56 E-value=17 Score=14.72 Aligned_cols=15 Identities=20% Similarity=0.173 Sum_probs=11.6
Q ss_pred hhhcCCCCcEEEcCC
Q 039528 118 FLLHQYDLKYLDLSH 132 (136)
Q Consensus 118 ~~~~~~~L~~l~l~~ 132 (136)
.+..+++|+.||...
T Consensus 8 Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 8 VIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHCCccceecccc
Confidence 567788999998754
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=24.56 E-value=87 Score=23.05 Aligned_cols=59 Identities=25% Similarity=0.206 Sum_probs=30.1
Q ss_pred ccEEEcCCCcccccCcccccCC---CcccEEEccCCccc---cccchhhhccCCCCEEEccCCcC
Q 039528 7 LFELNLKGNNVEGHLPNCLKYL---SHLKVFDISQNQLS---GSLSSTITSLTSLEYLDLSYNNF 65 (136)
Q Consensus 7 L~~l~l~~~~l~~~~~~~~~~l---~~L~~L~l~~~~~~---~~~~~~~~~~~~l~~l~l~~~~~ 65 (136)
+++++++.|...+.+|.....+ .-++.++.+...++ ...+...+.-..+++.+++.|..
T Consensus 216 lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 216 LTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred ccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 5667777777766555543222 23555555555443 11122233444566666665554
No 91
>TIGR02167 Liste_lipo_26 bacterial surface protein 26-residue repeat. This model describes a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, L. innocua, Enterococcus faecalis, Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=24.27 E-value=32 Score=13.73 Aligned_cols=12 Identities=33% Similarity=0.213 Sum_probs=5.3
Q ss_pred hcCCCCcEEEcC
Q 039528 120 LHQYDLKYLDLS 131 (136)
Q Consensus 120 ~~~~~L~~l~l~ 131 (136)
..+.++..|+++
T Consensus 3 ~~~~~~~~ldls 14 (26)
T TIGR02167 3 SGCSSLTSLDVS 14 (26)
T ss_pred Cccccccccccc
Confidence 334444444443
No 92
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=21.22 E-value=28 Score=13.84 Aligned_cols=7 Identities=43% Similarity=0.491 Sum_probs=2.7
Q ss_pred cEEEcCC
Q 039528 103 KELGLAN 109 (136)
Q Consensus 103 ~~l~l~~ 109 (136)
++|++..
T Consensus 3 KtL~L~~ 9 (26)
T PF07723_consen 3 KTLHLDS 9 (26)
T ss_pred eEEEeeE
Confidence 3344333
Done!