Query 039528
Match_columns 136
No_of_seqs 117 out of 1798
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 18:14:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039528.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039528hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m19_A Variable lymphocyte rec 99.9 1.9E-21 6.5E-26 123.1 13.9 133 2-135 56-191 (251)
2 2v9t_B SLIT homolog 2 protein 99.9 7.2E-21 2.5E-25 118.4 12.0 130 5-135 32-164 (220)
3 3m19_A Variable lymphocyte rec 99.9 1.4E-20 4.9E-25 119.0 13.3 131 5-136 35-168 (251)
4 3e6j_A Variable lymphocyte rec 99.9 1.2E-20 4.1E-25 118.0 12.7 132 4-136 39-172 (229)
5 3rfs_A Internalin B, repeat mo 99.9 1.6E-20 5.4E-25 120.1 13.5 133 2-135 82-217 (272)
6 2o6q_A Variable lymphocyte rec 99.8 4.4E-20 1.5E-24 117.9 13.7 131 4-135 84-217 (270)
7 2o6q_A Variable lymphocyte rec 99.8 4.4E-20 1.5E-24 117.9 13.7 134 2-136 58-194 (270)
8 2o6s_A Variable lymphocyte rec 99.8 5.7E-20 2E-24 113.3 13.5 132 4-136 27-161 (208)
9 2v70_A SLIT-2, SLIT homolog 2 99.8 4.5E-20 1.5E-24 114.8 13.0 130 5-135 32-165 (220)
10 4g8a_A TOLL-like receptor 4; l 99.8 2.5E-20 8.7E-25 130.4 13.1 130 6-136 53-186 (635)
11 4ezg_A Putative uncharacterize 99.8 1.1E-20 3.8E-25 115.6 9.9 130 3-136 64-194 (197)
12 1ozn_A Reticulon 4 receptor; N 99.8 4.8E-20 1.6E-24 118.5 13.1 129 5-134 80-212 (285)
13 1p9a_G Platelet glycoprotein I 99.8 7.2E-20 2.4E-24 118.1 13.5 131 3-135 75-207 (290)
14 1ozn_A Reticulon 4 receptor; N 99.8 1.1E-19 3.9E-24 116.7 13.1 132 3-135 54-189 (285)
15 1ogq_A PGIP-2, polygalacturona 99.8 3.6E-20 1.2E-24 120.6 10.7 133 3-135 123-280 (313)
16 2ell_A Acidic leucine-rich nuc 99.8 5.2E-20 1.8E-24 110.0 10.1 130 3-135 22-159 (168)
17 4fcg_A Uncharacterized protein 99.8 3.6E-20 1.2E-24 121.4 9.8 129 4-134 103-240 (328)
18 3rfs_A Internalin B, repeat mo 99.8 2.3E-19 8E-24 114.7 13.0 132 2-136 60-194 (272)
19 1ogq_A PGIP-2, polygalacturona 99.8 2.7E-20 9.1E-25 121.2 8.7 87 3-90 74-161 (313)
20 2z62_A TOLL-like receptor 4, v 99.8 2E-19 6.7E-24 115.1 12.5 131 5-136 28-162 (276)
21 2xot_A Amphoterin-induced prot 99.8 2E-19 6.8E-24 119.2 12.7 130 6-136 40-176 (361)
22 2je0_A Acidic leucine-rich nuc 99.8 1.1E-19 3.9E-24 106.5 9.3 127 3-132 15-149 (149)
23 3zyj_A Leucine-rich repeat-con 99.8 2.1E-19 7.3E-24 121.7 11.9 133 2-134 85-242 (440)
24 3zyi_A Leucine-rich repeat-con 99.8 2.4E-19 8.3E-24 121.8 12.1 133 2-135 96-254 (452)
25 3rgz_A Protein brassinosteroid 99.8 2.4E-19 8.2E-24 128.5 12.0 131 4-135 417-550 (768)
26 3rgz_A Protein brassinosteroid 99.8 6.6E-19 2.3E-23 126.3 14.1 85 4-89 465-549 (768)
27 2z66_A Variable lymphocyte rec 99.8 2.2E-19 7.5E-24 116.4 10.5 132 3-135 124-260 (306)
28 4fcg_A Uncharacterized protein 99.8 1.4E-19 4.8E-24 118.5 9.5 105 28-135 182-289 (328)
29 1p9a_G Platelet glycoprotein I 99.8 6.3E-19 2.2E-23 113.7 12.3 130 3-136 53-185 (290)
30 3v47_A TOLL-like receptor 5B a 99.8 7.4E-19 2.5E-23 119.2 13.1 131 5-136 275-408 (455)
31 2z7x_B TOLL-like receptor 1, v 99.8 6.1E-19 2.1E-23 121.5 12.7 134 2-135 321-456 (520)
32 3zyj_A Leucine-rich repeat-con 99.8 7.5E-19 2.6E-23 119.0 12.6 130 5-135 64-197 (440)
33 3vq2_A TLR4, TOLL-like recepto 99.8 9.2E-19 3.1E-23 122.4 13.1 131 5-136 32-166 (606)
34 3zyi_A Leucine-rich repeat-con 99.8 9.1E-19 3.1E-23 119.0 12.4 130 5-135 75-208 (452)
35 1wwl_A Monocyte differentiatio 99.8 3.1E-19 1.1E-23 116.1 9.6 129 5-135 149-308 (312)
36 4ecn_A Leucine-rich repeat pro 99.8 3.4E-19 1.2E-23 128.8 10.1 133 3-136 489-632 (876)
37 3vq2_A TLR4, TOLL-like recepto 99.8 6.7E-19 2.3E-23 123.1 11.3 132 3-135 422-557 (606)
38 2z66_A Variable lymphocyte rec 99.8 6.3E-19 2.2E-23 114.2 10.4 132 3-135 99-235 (306)
39 3e6j_A Variable lymphocyte rec 99.8 3.1E-18 1E-22 107.1 13.0 126 7-136 21-148 (229)
40 2z63_A TOLL-like receptor 4, v 99.8 1.8E-18 6E-23 120.1 12.6 131 5-136 28-162 (570)
41 2id5_A Lingo-1, leucine rich r 99.8 1.6E-18 5.5E-23 118.3 12.2 131 4-135 55-188 (477)
42 2z62_A TOLL-like receptor 4, v 99.8 9.8E-19 3.3E-23 111.9 10.4 132 2-134 49-188 (276)
43 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.1E-18 7.2E-23 119.9 12.6 133 2-135 350-485 (562)
44 2z80_A TOLL-like receptor 2, v 99.8 7.5E-19 2.6E-23 116.0 9.7 131 3-134 74-209 (353)
45 4eco_A Uncharacterized protein 99.8 3.2E-19 1.1E-23 125.6 8.2 133 3-136 247-390 (636)
46 1h6t_A Internalin B; cell adhe 99.8 3.6E-18 1.2E-22 110.2 12.4 125 3-135 66-190 (291)
47 2xwt_C Thyrotropin receptor; s 99.8 7.1E-19 2.4E-23 110.5 8.6 128 6-134 32-167 (239)
48 3oja_A Leucine-rich immune mol 99.8 1.6E-18 5.4E-23 118.9 10.8 106 30-135 121-226 (487)
49 1w8a_A SLIT protein; signaling 99.8 5.2E-18 1.8E-22 103.4 12.0 126 7-136 10-139 (192)
50 3o6n_A APL1; leucine-rich repe 99.8 3.2E-18 1.1E-22 114.3 11.7 110 4-114 68-179 (390)
51 3t6q_A CD180 antigen; protein- 99.8 2E-18 6.7E-23 120.8 11.1 129 6-135 34-165 (606)
52 1wwl_A Monocyte differentiatio 99.8 1.1E-18 3.8E-23 113.5 9.2 134 2-136 118-266 (312)
53 1a9n_A U2A', U2A'; complex (nu 99.8 5.8E-19 2E-23 106.3 7.2 129 3-135 17-152 (176)
54 2id5_A Lingo-1, leucine rich r 99.8 2.6E-18 8.9E-23 117.3 11.1 131 5-136 32-165 (477)
55 1h6u_A Internalin H; cell adhe 99.8 5.5E-18 1.9E-22 110.1 12.0 83 49-135 125-207 (308)
56 1h6u_A Internalin H; cell adhe 99.8 1.1E-17 3.7E-22 108.8 13.3 125 3-135 61-185 (308)
57 2xwt_C Thyrotropin receptor; s 99.8 2E-18 6.8E-23 108.4 9.4 134 2-135 52-217 (239)
58 4ecn_A Leucine-rich repeat pro 99.8 5.1E-19 1.7E-23 127.9 7.6 133 2-136 445-608 (876)
59 2xot_A Amphoterin-induced prot 99.8 1.2E-18 4.2E-23 115.4 8.9 132 3-135 62-201 (361)
60 2z80_A TOLL-like receptor 2, v 99.8 2.4E-18 8.3E-23 113.5 10.1 131 5-136 52-187 (353)
61 4eco_A Uncharacterized protein 99.8 1.8E-19 6.2E-24 126.9 4.7 132 2-135 203-365 (636)
62 1xeu_A Internalin C; cellular 99.8 7.6E-18 2.6E-22 107.3 11.7 123 4-135 40-162 (263)
63 3o53_A Protein LRIM1, AGAP0063 99.8 3.3E-18 1.1E-22 111.5 10.2 128 5-135 120-249 (317)
64 1xku_A Decorin; proteoglycan, 99.8 8.1E-18 2.8E-22 110.1 11.9 129 4-136 144-276 (330)
65 3o53_A Protein LRIM1, AGAP0063 99.8 3.1E-18 1.1E-22 111.6 9.9 128 6-136 100-227 (317)
66 3oja_A Leucine-rich immune mol 99.8 3.4E-18 1.2E-22 117.2 10.5 130 4-136 119-250 (487)
67 4ezg_A Putative uncharacterize 99.8 2.7E-18 9.2E-23 105.0 8.8 127 4-136 43-172 (197)
68 3oja_B Anopheles plasmodium-re 99.8 6E-18 2.1E-22 118.4 11.7 111 4-115 74-186 (597)
69 3v47_A TOLL-like receptor 5B a 99.8 7.1E-18 2.4E-22 114.4 11.7 131 5-136 30-167 (455)
70 1ziw_A TOLL-like receptor 3; i 99.8 9.7E-18 3.3E-22 118.7 12.8 130 5-135 25-157 (680)
71 1h6t_A Internalin B; cell adhe 99.8 7E-18 2.4E-22 108.9 11.1 126 2-135 87-212 (291)
72 2z81_A CD282 antigen, TOLL-lik 99.8 3.5E-18 1.2E-22 118.2 10.3 130 5-135 26-160 (549)
73 3o6n_A APL1; leucine-rich repe 99.8 5.7E-18 1.9E-22 113.1 11.0 132 4-136 44-178 (390)
74 2wfh_A SLIT homolog 2 protein 99.8 2.4E-17 8.4E-22 100.5 12.7 123 8-135 13-138 (193)
75 3t6q_A CD180 antigen; protein- 99.8 9.6E-18 3.3E-22 117.3 12.2 132 2-134 275-411 (606)
76 2z81_A CD282 antigen, TOLL-lik 99.8 4.2E-18 1.4E-22 117.9 9.8 132 1-133 46-182 (549)
77 2v9t_B SLIT homolog 2 protein 99.8 2.7E-17 9.2E-22 102.2 11.7 125 8-136 14-141 (220)
78 1xeu_A Internalin C; cellular 99.7 4.6E-18 1.6E-22 108.3 8.3 125 2-135 60-184 (263)
79 1xku_A Decorin; proteoglycan, 99.7 3.2E-17 1.1E-21 107.2 12.5 36 100-135 192-228 (330)
80 2o6s_A Variable lymphocyte rec 99.7 3.1E-18 1.1E-22 105.5 7.3 110 2-112 49-160 (208)
81 4g8a_A TOLL-like receptor 4; l 99.7 8.8E-18 3E-22 117.6 10.4 134 1-135 72-213 (635)
82 3oja_B Anopheles plasmodium-re 99.7 1.5E-17 5.2E-22 116.4 11.5 132 4-136 50-184 (597)
83 1m9s_A Internalin B; cell inva 99.7 1.8E-17 6.3E-22 116.1 11.7 125 3-135 63-187 (605)
84 2o6r_A Variable lymphocyte rec 99.7 6.5E-17 2.2E-21 97.3 12.6 126 7-136 9-137 (177)
85 2z7x_B TOLL-like receptor 1, v 99.7 8.9E-18 3E-22 115.7 9.9 133 1-136 344-481 (520)
86 2z63_A TOLL-like receptor 4, v 99.7 9E-18 3.1E-22 116.6 10.0 135 1-136 48-190 (570)
87 1ziw_A TOLL-like receptor 3; i 99.7 4.9E-17 1.7E-21 115.1 13.2 61 75-135 533-596 (680)
88 4glp_A Monocyte differentiatio 99.7 6.9E-18 2.4E-22 109.7 7.6 129 4-135 144-284 (310)
89 4glp_A Monocyte differentiatio 99.7 2.1E-17 7.3E-22 107.3 8.4 132 1-136 165-307 (310)
90 4fmz_A Internalin; leucine ric 99.7 7.6E-17 2.6E-21 106.0 11.1 36 99-135 310-345 (347)
91 3j0a_A TOLL-like receptor 5; m 99.7 3.7E-17 1.3E-21 118.3 10.3 131 4-135 23-160 (844)
92 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1E-16 3.5E-21 111.5 12.2 125 6-135 32-158 (562)
93 1m9s_A Internalin B; cell inva 99.7 9.6E-17 3.3E-21 112.5 11.6 126 2-135 84-209 (605)
94 2ft3_A Biglycan; proteoglycan, 99.7 5.2E-17 1.8E-21 106.4 9.6 130 6-135 55-229 (332)
95 2v70_A SLIT-2, SLIT homolog 2 99.7 8E-17 2.7E-21 100.1 9.5 110 2-112 54-165 (220)
96 4fmz_A Internalin; leucine ric 99.7 3.3E-16 1.1E-20 103.0 12.9 107 25-136 217-324 (347)
97 1o6v_A Internalin A; bacterial 99.7 1.7E-16 5.7E-21 108.3 11.5 123 4-134 242-364 (466)
98 3j0a_A TOLL-like receptor 5; m 99.7 5.6E-17 1.9E-21 117.4 9.5 134 1-134 44-185 (844)
99 2ft3_A Biglycan; proteoglycan, 99.7 1.2E-16 4.2E-21 104.6 10.0 126 5-135 33-159 (332)
100 1o6v_A Internalin A; bacterial 99.7 2.9E-16 1E-20 107.0 12.0 125 3-135 263-387 (466)
101 4b8c_D Glucose-repressible alc 99.7 8.1E-17 2.8E-21 115.0 9.1 114 20-136 215-329 (727)
102 2ca6_A RAN GTPase-activating p 99.7 1.7E-17 5.8E-22 110.7 5.3 134 3-136 92-257 (386)
103 2ell_A Acidic leucine-rich nuc 99.7 1.1E-16 3.9E-21 95.4 7.5 115 2-118 46-165 (168)
104 2wfh_A SLIT homolog 2 protein 99.7 6.3E-16 2.2E-20 94.3 10.3 106 5-112 31-138 (193)
105 1ds9_A Outer arm dynein; leuci 99.7 6.2E-19 2.1E-23 108.0 -4.1 126 6-135 19-152 (198)
106 2ast_B S-phase kinase-associat 99.7 2.4E-17 8.3E-22 107.9 3.1 130 4-133 117-257 (336)
107 2o6r_A Variable lymphocyte rec 99.7 1.9E-15 6.4E-20 90.9 10.4 109 4-113 27-137 (177)
108 2ast_B S-phase kinase-associat 99.6 1.4E-16 4.8E-21 104.3 4.4 132 3-134 91-233 (336)
109 1w8a_A SLIT protein; signaling 99.6 1.8E-15 6.3E-20 92.1 9.0 107 5-112 29-138 (192)
110 3bz5_A Internalin-J, INLJ; leu 99.6 8.3E-15 2.8E-19 99.8 13.2 57 4-66 63-119 (457)
111 1dce_A Protein (RAB geranylger 99.6 2.7E-15 9.2E-20 104.6 10.7 119 6-130 442-567 (567)
112 3cvr_A Invasion plasmid antige 99.6 5.7E-15 2E-19 102.9 12.3 116 6-136 121-243 (571)
113 3bz5_A Internalin-J, INLJ; leu 99.6 8.3E-15 2.8E-19 99.8 12.9 124 2-135 103-245 (457)
114 3goz_A Leucine-rich repeat-con 99.6 7.6E-16 2.6E-20 102.0 7.4 60 7-66 24-93 (362)
115 3goz_A Leucine-rich repeat-con 99.6 3.7E-16 1.3E-20 103.5 5.3 88 4-91 49-151 (362)
116 4b8c_D Glucose-repressible alc 99.6 1.3E-16 4.5E-21 113.9 2.9 114 2-119 221-336 (727)
117 2je0_A Acidic leucine-rich nuc 99.6 1.2E-15 4.1E-20 89.3 6.3 105 2-108 39-148 (149)
118 3cvr_A Invasion plasmid antige 99.6 1.8E-14 6E-19 100.4 11.7 111 7-135 82-192 (571)
119 2r9u_A Variable lymphocyte rec 99.6 1.6E-14 5.4E-19 86.7 9.9 106 7-116 14-121 (174)
120 2ca6_A RAN GTPase-activating p 99.6 1.3E-15 4.6E-20 101.5 5.6 58 78-135 159-228 (386)
121 3g06_A SSPH2 (leucine-rich rep 99.6 3.9E-14 1.3E-18 99.6 12.7 77 53-136 221-297 (622)
122 1ds9_A Outer arm dynein; leuci 99.6 1.6E-17 5.4E-22 101.7 -3.9 125 3-135 46-184 (198)
123 1a9n_A U2A', U2A'; complex (nu 99.6 6.7E-15 2.3E-19 88.4 7.7 109 23-136 13-126 (176)
124 3g39_A Variable lymphocyte rec 99.6 2E-14 6.9E-19 86.0 9.7 104 6-113 10-115 (170)
125 1dce_A Protein (RAB geranylger 99.6 1.9E-14 6.4E-19 100.4 10.8 103 30-136 442-546 (567)
126 1jl5_A Outer protein YOPM; leu 99.6 3.1E-14 1.1E-18 96.9 11.6 119 5-135 131-249 (454)
127 4ay9_X Follicle-stimulating ho 99.6 1.1E-14 3.9E-19 96.0 9.2 131 6-136 31-215 (350)
128 1z7x_W Ribonuclease inhibitor; 99.6 2.2E-15 7.5E-20 102.3 5.4 133 4-136 255-411 (461)
129 3g39_A Variable lymphocyte rec 99.6 4E-14 1.4E-18 84.6 9.8 103 30-136 10-115 (170)
130 2r9u_A Variable lymphocyte rec 99.6 4.8E-14 1.6E-18 84.6 9.9 102 31-136 14-118 (174)
131 1jl5_A Outer protein YOPM; leu 99.5 1.3E-13 4.5E-18 93.9 11.7 104 2-116 150-253 (454)
132 1z7x_W Ribonuclease inhibitor; 99.5 3.9E-14 1.3E-18 96.2 7.0 129 6-135 143-296 (461)
133 3un9_A NLR family member X1; l 99.5 2E-14 7E-19 95.6 3.3 132 5-136 101-252 (372)
134 3g06_A SSPH2 (leucine-rich rep 99.5 1.2E-12 4E-17 92.2 11.6 97 6-117 62-158 (622)
135 4ay9_X Follicle-stimulating ho 99.4 6.5E-13 2.2E-17 87.6 9.1 106 8-116 12-120 (350)
136 2ifg_A High affinity nerve gro 99.4 1.7E-12 5.9E-17 85.4 9.8 103 8-113 11-116 (347)
137 2ifg_A High affinity nerve gro 99.4 1.2E-12 4.2E-17 86.1 8.5 88 2-91 28-116 (347)
138 3sb4_A Hypothetical leucine ri 99.4 2E-12 6.7E-17 84.7 8.7 81 52-135 225-309 (329)
139 3sb4_A Hypothetical leucine ri 99.4 8.8E-12 3E-16 81.6 11.1 101 28-130 225-328 (329)
140 3un9_A NLR family member X1; l 99.3 1.4E-13 4.9E-18 91.6 1.2 132 5-136 72-224 (372)
141 3ogk_B Coronatine-insensitive 99.3 4.5E-13 1.5E-17 93.5 2.6 133 4-136 377-526 (592)
142 3ogk_B Coronatine-insensitive 99.3 2.3E-11 7.7E-16 85.0 8.6 131 3-135 162-305 (592)
143 1io0_A Tropomodulin; LRR prote 99.1 5.1E-11 1.7E-15 72.1 3.3 114 22-135 29-163 (185)
144 2p1m_B Transport inhibitor res 99.0 2.8E-11 9.7E-16 84.5 0.0 131 4-135 371-518 (594)
145 2p1m_B Transport inhibitor res 99.0 5.1E-10 1.7E-14 78.2 5.5 130 4-133 65-221 (594)
146 2ra8_A Uncharacterized protein 99.0 1.5E-09 5.1E-14 72.0 6.3 130 4-136 171-320 (362)
147 1io0_A Tropomodulin; LRR prote 98.9 3.8E-10 1.3E-14 68.2 2.3 112 2-113 33-164 (185)
148 4fdw_A Leucine rich hypothetic 98.9 3.8E-08 1.3E-12 66.2 11.0 59 2-62 177-235 (401)
149 3rw6_A Nuclear RNA export fact 98.9 7.1E-09 2.4E-13 66.0 6.6 65 26-91 167-233 (267)
150 4fdw_A Leucine rich hypothetic 98.8 4.8E-08 1.6E-12 65.7 10.4 79 6-88 158-236 (401)
151 3rw6_A Nuclear RNA export fact 98.8 2.7E-09 9.3E-14 67.9 2.8 80 50-130 167-258 (267)
152 3e4g_A ATP synthase subunit S, 98.7 1.9E-08 6.5E-13 60.1 3.7 86 28-114 60-154 (176)
153 2ra8_A Uncharacterized protein 98.6 1.5E-07 5E-12 62.6 6.0 130 4-136 138-292 (362)
154 3e4g_A ATP synthase subunit S, 98.5 2.1E-07 7.2E-12 55.6 4.3 81 7-88 63-149 (176)
155 4gt6_A Cell surface protein; l 98.3 3.2E-06 1.1E-10 56.6 8.0 110 20-133 256-367 (394)
156 4gt6_A Cell surface protein; l 98.3 3.7E-05 1.3E-09 51.5 12.2 128 1-134 261-389 (394)
157 4h09_A Hypothetical leucine ri 98.2 1.7E-05 5.8E-10 52.7 10.0 106 22-131 233-341 (379)
158 4fs7_A Uncharacterized protein 98.2 1.8E-05 6.1E-10 53.0 9.1 81 48-132 292-375 (394)
159 4fs7_A Uncharacterized protein 98.2 8.9E-06 3.1E-10 54.4 7.4 57 2-60 68-124 (394)
160 1pgv_A TMD-1, tropomodulin TMD 98.1 7.3E-06 2.5E-10 49.9 5.8 110 25-134 37-168 (197)
161 4h09_A Hypothetical leucine ri 98.0 4.3E-05 1.5E-09 50.8 8.7 117 3-123 238-356 (379)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 3.2E-05 1.1E-09 47.1 3.4 109 4-112 40-169 (197)
163 3rfe_A Platelet glycoprotein I 97.4 0.00054 1.8E-08 38.8 5.8 35 101-135 32-67 (130)
164 3rfe_A Platelet glycoprotein I 97.3 0.0012 4E-08 37.4 6.2 56 9-66 12-68 (130)
165 2lz0_A Uncharacterized protein 86.0 1.2 4.3E-05 23.7 3.7 47 16-63 7-53 (100)
166 2lz0_A Uncharacterized protein 79.4 5.1 0.00017 21.3 4.5 38 1-39 16-53 (100)
No 1
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.9e-21 Score=123.05 Aligned_cols=133 Identities=25% Similarity=0.274 Sum_probs=90.0
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|+
T Consensus 56 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~ 134 (251)
T 3m19_A 56 RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLK 134 (251)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred cCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCccc
Confidence 34566777777777777655566667777777777777776555556667777777777777776 34444456677777
Q ss_pred EEEeccceeeecc--CCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528 82 VLVLSSTILVKTE--NFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 82 ~l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l 135 (136)
++++++|.+...+ .+..+++|++|++++|.++.++. .+..+++|+.+++++|++
T Consensus 135 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 135 ELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred EEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 7777777665554 34556677777777777755553 666777777777777765
No 2
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=7.2e-21 Score=118.36 Aligned_cols=130 Identities=22% Similarity=0.291 Sum_probs=116.2
Q ss_pred CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528 5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV 84 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~ 84 (136)
+.++.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|+.++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEE
Confidence 46899999999999877778999999999999999999888899999999999999999998 56666688999999999
Q ss_pred eccceeeecc--CCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528 85 LSSTILVKTE--NFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 85 l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l 135 (136)
+++|.+.... .+..+++|+.|++++|.++.++. .+..+++|+.+++++|++
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 9999887663 56778899999999999977664 688899999999999986
No 3
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.4e-20 Score=119.02 Aligned_cols=131 Identities=26% Similarity=0.339 Sum_probs=116.0
Q ss_pred CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528 5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV 84 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~ 84 (136)
+.++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ ..+...+..+++|++++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEE
Confidence 46899999999999888888999999999999999999877888999999999999999998 45545688899999999
Q ss_pred eccceeeeccC--CCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcCC
Q 039528 85 LSSTILVKTEN--FLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 85 l~~~~~~~~~~--~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~ 136 (136)
+++|.+...+. +..+++|+.|++++|.++.++. .+..+++|+.|++++|.++
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 99998876653 5678899999999999987776 7889999999999999874
No 4
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.86 E-value=1.2e-20 Score=118.00 Aligned_cols=132 Identities=23% Similarity=0.228 Sum_probs=115.0
Q ss_pred CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL 83 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l 83 (136)
.++|++|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|++|++++|+++ .++...+..+++|+.+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKEL 117 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeE
Confidence 356999999999999888888999999999999999998666667889999999999999998 4555567889999999
Q ss_pred Eeccceeeecc-CCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcCC
Q 039528 84 VLSSTILVKTE-NFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 84 ~l~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~ 136 (136)
++++|.+...+ .+..+++|++|++++|.++.++. .+..+++|+.+++++|+++
T Consensus 118 ~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 118 FMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp ECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred eccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 99999887765 45677799999999999987774 6888999999999999864
No 5
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=1.6e-20 Score=120.10 Aligned_cols=133 Identities=30% Similarity=0.361 Sum_probs=91.0
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++ .+...+..+++|+
T Consensus 82 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~ 160 (272)
T 3rfs_A 82 KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLT 160 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred cCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCc-cCHHHhccCccCC
Confidence 346667777777777775555556777777777777777765555556777777777777777763 3434456677777
Q ss_pred EEEeccceeeeccC--CCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528 82 VLVLSSTILVKTEN--FLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 82 ~l~l~~~~~~~~~~--~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l 135 (136)
.+++++|.+...+. +..+++|+.|++++|.++.++. .+..+++|+.|++++|++
T Consensus 161 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 161 ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 77777776655542 4556677888888777755543 567777788888877765
No 6
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.85 E-value=4.4e-20 Score=117.94 Aligned_cols=131 Identities=30% Similarity=0.364 Sum_probs=62.3
Q ss_pred CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL 83 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l 83 (136)
+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|+.+
T Consensus 84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKEL 162 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCccccee
Confidence 334444444444444333333344444444444444444333334444455555555555544 2232334445555555
Q ss_pred Eeccceeeecc--CCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528 84 VLSSTILVKTE--NFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 84 ~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l 135 (136)
++++|.+...+ .+..+++|++|++++|.++.+|. .+..+++|+.+++++|++
T Consensus 163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 55555444333 23444555666666665544443 345555666666666554
No 7
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.85 E-value=4.4e-20 Score=117.94 Aligned_cols=134 Identities=28% Similarity=0.298 Sum_probs=88.8
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
..+++|++|++++|.++...+..|..+++|++|++++|.++...+..+..+++|++|++++|.+++ .+...+..+++|+
T Consensus 58 ~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~ 136 (270)
T 2o6q_A 58 HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLT 136 (270)
T ss_dssp SSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred cCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe-eCHHHhCcCcCCC
Confidence 345666667776666664444455666777777777776665555556667777777777777763 3334466677777
Q ss_pred EEEeccceeeeccC--CCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcCC
Q 039528 82 VLVLSSTILVKTEN--FLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 82 ~l~l~~~~~~~~~~--~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~ 136 (136)
++++++|.+...+. +..+++|+.|++++|.++.++. .+..+++|++|++++|.++
T Consensus 137 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred EEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence 77777776655542 4566678888888887766654 5677788888888877653
No 8
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=5.7e-20 Score=113.26 Aligned_cols=132 Identities=26% Similarity=0.322 Sum_probs=113.5
Q ss_pred CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL 83 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l 83 (136)
.+++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|+++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEE
Confidence 456999999999999766677889999999999999998666667889999999999999998 4554557889999999
Q ss_pred EeccceeeeccC--CCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcCC
Q 039528 84 VLSSTILVKTEN--FLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 84 ~l~~~~~~~~~~--~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~ 136 (136)
++++|.+...+. +..+++|++|++++|.++.++. .+..+++|+.+++++|+++
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 999998876653 5778899999999999977775 5788999999999999763
No 9
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=4.5e-20 Score=114.77 Aligned_cols=130 Identities=19% Similarity=0.244 Sum_probs=113.5
Q ss_pred CcccEEEcCCCcccccCc-ccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528 5 KNLFELNLKGNNVEGHLP-NCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL 83 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l 83 (136)
+.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++ ++...+..+++|+++
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCGGGGTTCSSCCEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc-cCHhHhcCCcCCCEE
Confidence 357899999999997644 568899999999999999997777789999999999999999984 555668899999999
Q ss_pred Eeccceeeecc--CCCCCccccEEEcCCCCCCCC-ChhhhcCCCCcEEEcCCCcC
Q 039528 84 VLSSTILVKTE--NFLPTFQLKELGLANCSLNVV-PTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 84 ~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l 135 (136)
++++|.+.... .+..+++|+.|++++|.++.+ |..+..+++|+.|++++|++
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 99999887663 567788999999999999665 67899999999999999986
No 10
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=2.5e-20 Score=130.38 Aligned_cols=130 Identities=25% Similarity=0.263 Sum_probs=116.4
Q ss_pred cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEe
Q 039528 6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL 85 (136)
Q Consensus 6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l 85 (136)
.+++|++++|.++...+..|.++++|++|++++|.++++.++.|..+++|++|++++|+++ .++...+..+++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEEC
Confidence 6899999999999777789999999999999999999777788999999999999999998 566667899999999999
Q ss_pred ccceeeecc--CCCCCccccEEEcCCCCCC--CCChhhhcCCCCcEEEcCCCcCC
Q 039528 86 SSTILVKTE--NFLPTFQLKELGLANCSLN--VVPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 86 ~~~~~~~~~--~~~~~~~L~~l~l~~n~~~--~~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
++|.+...+ .+..+++|++|++++|.++ .+|..++.+++|++|++++|.++
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 999887665 4678889999999999994 46788999999999999999874
No 11
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.85 E-value=1.1e-20 Score=115.63 Aligned_cols=130 Identities=17% Similarity=0.125 Sum_probs=106.2
Q ss_pred CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528 3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV 82 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~ 82 (136)
.+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+ ..+..+++|++
T Consensus 64 ~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~ 140 (197)
T 4ezg_A 64 YAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL-TKINTLPKVNS 140 (197)
T ss_dssp GCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGH-HHHTTCSSCCE
T ss_pred cCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhH-HHHhhCCCCCE
Confidence 4677888888888665 23467888999999999998887677888889999999999999975444 44788999999
Q ss_pred EEeccce-eeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528 83 LVLSSTI-LVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 83 l~l~~~~-~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
+++++|. +.+.+.+..+++|+.|++++|.++.++ .+..+++|+.|++++|.+.
T Consensus 141 L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 141 IDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp EECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred EEccCCCCccccHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 9999986 777777777889999999999998877 7888999999999999863
No 12
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=4.8e-20 Score=118.48 Aligned_cols=129 Identities=22% Similarity=0.228 Sum_probs=50.4
Q ss_pred CcccEEEcCCCc-ccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528 5 KNLFELNLKGNN-VEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL 83 (136)
Q Consensus 5 ~~L~~l~l~~~~-l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l 83 (136)
++|++|++++|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+...+..+++|+++
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L 158 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHL 158 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc-cCHhHhccCCCccEE
Confidence 334444444433 332223333344444444444444433333334444444444444444432 222223344444444
Q ss_pred Eeccceeeecc--CCCCCccccEEEcCCCCCCCC-ChhhhcCCCCcEEEcCCCc
Q 039528 84 VLSSTILVKTE--NFLPTFQLKELGLANCSLNVV-PTFLLHQYDLKYLDLSHNN 134 (136)
Q Consensus 84 ~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~ 134 (136)
++++|.+...+ .+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.
T Consensus 159 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc
Confidence 44444333322 123333444444444444222 3334444444444444443
No 13
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=7.2e-20 Score=118.12 Aligned_cols=131 Identities=28% Similarity=0.270 Sum_probs=97.9
Q ss_pred CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528 3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV 82 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~ 82 (136)
.+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|+++ .++...+..+++|+.
T Consensus 75 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEK 152 (290)
T ss_dssp CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCE
T ss_pred CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCE
Confidence 3566777777777776 56666777788888888888887666667777888888888888887 445455677788888
Q ss_pred EEeccceeeecc--CCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528 83 LVLSSTILVKTE--NFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 83 l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
+++++|.+...+ .+..+++|+.|++++|.++.+|..+....+|+.+++++|++
T Consensus 153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred EECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 888888776554 34556788888888888888888777778888888888875
No 14
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=1.1e-19 Score=116.72 Aligned_cols=132 Identities=24% Similarity=0.224 Sum_probs=81.4
Q ss_pred CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCc-cccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQ-LSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
.+++|++|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|++++|.+.+..+ ..+..+++|+
T Consensus 54 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~ 132 (285)
T 1ozn_A 54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP-GLFRGLAALQ 132 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCC
T ss_pred cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECH-hHhhCCcCCC
Confidence 45566666666666665555566666666666666664 554445556666666666666666653323 3355666677
Q ss_pred EEEeccceeeecc--CCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528 82 VLVLSSTILVKTE--NFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 82 ~l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l 135 (136)
++++++|.+...+ .+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+
T Consensus 133 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 7777666655443 24555667777777777765554 466677777777777665
No 15
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=3.6e-20 Score=120.60 Aligned_cols=133 Identities=24% Similarity=0.342 Sum_probs=89.5
Q ss_pred CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccC-CCCEEEccCCcCcCCCCh----------
Q 039528 3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLT-SLEYLDLSYNNFEGPCPL---------- 71 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~~~~~---------- 71 (136)
.+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+. .|++|++++|.+.+..|.
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L 202 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV 202 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEE
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEE
Confidence 456677777777777766677777777777777777777666666666665 666666666666544332
Q ss_pred ------------HhhhcCccceEEEeccceeee-ccCCCCCccccEEEcCCCCC-CCCChhhhcCCCCcEEEcCCCcC
Q 039528 72 ------------SLLAHHSKLEVLVLSSTILVK-TENFLPTFQLKELGLANCSL-NVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 72 ------------~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~~L~~l~l~~n~~-~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
..+..+++|+.+++++|.+.. .+.+..+++|++|++++|.+ +.+|..+..+++|++|++++|.+
T Consensus 203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 224445556666666655432 22345556788888888888 47888888888888998888875
No 16
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.83 E-value=5.2e-20 Score=109.98 Aligned_cols=130 Identities=23% Similarity=0.220 Sum_probs=113.2
Q ss_pred CCCcccEEEcCCCccc-ccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 3 ELKNLFELNLKGNNVE-GHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
..+++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.++ ..+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD-MLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCC-HHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHH-HHHhhCCCCC
Confidence 3578999999999998 67788889999999999999999865 778889999999999999986566 4477799999
Q ss_pred EEEeccceeeecc---CCCCCccccEEEcCCCCCCCCCh----hhhcCCCCcEEEcCCCcC
Q 039528 82 VLVLSSTILVKTE---NFLPTFQLKELGLANCSLNVVPT----FLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 82 ~l~l~~~~~~~~~---~~~~~~~L~~l~l~~n~~~~~~~----~~~~~~~L~~l~l~~n~l 135 (136)
++++++|.+...+ .+..+++|++|++++|.++.++. .+..+++|++|++++|.+
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 9999999887753 55778899999999999977776 788999999999998875
No 17
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=3.6e-20 Score=121.36 Aligned_cols=129 Identities=22% Similarity=0.273 Sum_probs=74.8
Q ss_pred CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHh--------hh
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSL--------LA 75 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~--------~~ 75 (136)
+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|...+.+|... +.
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~ 180 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence 456666666666666 56666666666666666666665 556666666666666666655554444321 11
Q ss_pred cCccceEEEeccceeeecc-CCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCc
Q 039528 76 HHSKLEVLVLSSTILVKTE-NFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNN 134 (136)
Q Consensus 76 ~~~~l~~l~l~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~ 134 (136)
.+++|+++++++|.+...+ .+..+++|++|++++|.++.+|..++.+++|++|++++|.
T Consensus 181 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCT 240 (328)
T ss_dssp ESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCT
T ss_pred cCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCc
Confidence 2555666666665554333 2344445566666666665555555555556666665554
No 18
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=2.3e-19 Score=114.70 Aligned_cols=132 Identities=28% Similarity=0.316 Sum_probs=111.2
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
..+++|++|++++|.+.+ . ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++ .+...+..+++|+
T Consensus 60 ~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLT 136 (272)
T ss_dssp GGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCC
T ss_pred ccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCc-cCHHHhccCCCCC
Confidence 357889999999999885 3 468889999999999999987777778899999999999999984 4445578899999
Q ss_pred EEEeccceeeeccC--CCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcCC
Q 039528 82 VLVLSSTILVKTEN--FLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 82 ~l~l~~~~~~~~~~--~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~ 136 (136)
++++++|.+...+. +..+++|+.|++++|.++.++. .++.+++|+.|++++|.++
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 99999998876653 5677899999999999976665 5688999999999999874
No 19
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=2.7e-20 Score=121.24 Aligned_cols=87 Identities=26% Similarity=0.465 Sum_probs=46.3
Q ss_pred CCCcccEEEcCC-CcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 3 ELKNLFELNLKG-NNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 3 ~l~~L~~l~l~~-~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
++++|++|++++ |.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..|.. +..+++|+
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~ 152 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLV 152 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCC
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH-HhcCCCCC
Confidence 345555555553 5555555555555555555555555555455555555555555555555555444432 44455555
Q ss_pred EEEecccee
Q 039528 82 VLVLSSTIL 90 (136)
Q Consensus 82 ~l~l~~~~~ 90 (136)
++++++|.+
T Consensus 153 ~L~L~~N~l 161 (313)
T 1ogq_A 153 GITFDGNRI 161 (313)
T ss_dssp EEECCSSCC
T ss_pred eEECcCCcc
Confidence 555555444
No 20
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.83 E-value=2e-19 Score=115.14 Aligned_cols=131 Identities=25% Similarity=0.253 Sum_probs=108.7
Q ss_pred CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528 5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV 84 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~ 84 (136)
+++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+. +...+..+++|++++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc-ChhhhcCCccccEEE
Confidence 3589999999999877777888999999999999998876677888899999999999998744 334577889999999
Q ss_pred eccceeeecc--CCCCCccccEEEcCCCCCCC--CChhhhcCCCCcEEEcCCCcCC
Q 039528 85 LSSTILVKTE--NFLPTFQLKELGLANCSLNV--VPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 85 l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~--~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
+++|.+...+ .+..+++|++|++++|.++. +|..++.+++|+.|++++|.++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 9998776654 35677789999999999954 6788899999999999998764
No 21
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=2e-19 Score=119.16 Aligned_cols=130 Identities=29% Similarity=0.312 Sum_probs=107.9
Q ss_pred cccEEEcCCCcccccCccccc-CCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528 6 NLFELNLKGNNVEGHLPNCLK-YLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV 84 (136)
Q Consensus 6 ~L~~l~l~~~~l~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~ 84 (136)
.++.|++++|.+++..+..+. .+++|++|++++|.+++..+..|..+++|++|++++|++. .++...+..+++|+.|+
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEEE
Confidence 478899999999977777777 8999999999999998777778889999999999999997 45545688899999999
Q ss_pred eccceeeecc--CCCCCccccEEEcCCCCCCCCChhh----hcCCCCcEEEcCCCcCC
Q 039528 85 LSSTILVKTE--NFLPTFQLKELGLANCSLNVVPTFL----LHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 85 l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~----~~~~~L~~l~l~~n~l~ 136 (136)
+++|.+.... .+..+.+|+.|++++|.++.+|..+ ..+++|+.|++++|.++
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 9998886653 5677889999999999998888754 56889999999998874
No 22
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.82 E-value=1.1e-19 Score=106.54 Aligned_cols=127 Identities=24% Similarity=0.271 Sum_probs=109.8
Q ss_pred CCCcccEEEcCCCccc-ccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 3 ELKNLFELNLKGNNVE-GHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
..++++.+++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+| ..+..+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLE-VLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTH-HHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHH-HHhhhCCCCC
Confidence 3577999999999998 67888889999999999999999865 778889999999999999986555 4577799999
Q ss_pred EEEeccceeeec---cCCCCCccccEEEcCCCCCCCCCh----hhhcCCCCcEEEcCC
Q 039528 82 VLVLSSTILVKT---ENFLPTFQLKELGLANCSLNVVPT----FLLHQYDLKYLDLSH 132 (136)
Q Consensus 82 ~l~l~~~~~~~~---~~~~~~~~L~~l~l~~n~~~~~~~----~~~~~~~L~~l~l~~ 132 (136)
++++++|.+... ..+..+++|++|++++|.++.++. .+..+++|+.|++++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999988764 456777899999999999977775 788999999999864
No 23
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=2.1e-19 Score=121.68 Aligned_cols=133 Identities=23% Similarity=0.245 Sum_probs=70.8
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcC--------------
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEG-------------- 67 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-------------- 67 (136)
.++++|++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|++++|.+..
T Consensus 85 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 164 (440)
T 3zyj_A 85 KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR 164 (440)
T ss_dssp SSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred hCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCE
Confidence 345666666666666665555666666666666666666654444455556666666666655542
Q ss_pred ----------CCChHhhhcCccceEEEeccceeeeccCCCCCccccEEEcCCCCCCCC-ChhhhcCCCCcEEEcCCCc
Q 039528 68 ----------PCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVV-PTFLLHQYDLKYLDLSHNN 134 (136)
Q Consensus 68 ----------~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~ 134 (136)
.++...+..+++|+++++++|.+...+.+..+.+|+.|++++|.++.+ |..+..+++|+.|++++|.
T Consensus 165 L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 242 (440)
T 3zyj_A 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242 (440)
T ss_dssp EECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc
Confidence 222223444445555555555444444444444555555555555333 3344444444444444443
No 24
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=2.4e-19 Score=121.77 Aligned_cols=133 Identities=22% Similarity=0.205 Sum_probs=75.1
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChH---------
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLS--------- 72 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~--------- 72 (136)
.++++|+.|++++|.+++..+..|.++++|++|++++|.++...+..+..+++|++|++++|.+. .++..
T Consensus 96 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~ 174 (452)
T 3zyi_A 96 RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLM 174 (452)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCC
T ss_pred CCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCccc
Confidence 45666777777777777666666666777777777777666544455666666666666666654 22222
Q ss_pred ----------------hhhcCccceEEEeccceeeeccCCCCCccccEEEcCCCCCCCC-ChhhhcCCCCcEEEcCCCcC
Q 039528 73 ----------------LLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVV-PTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 73 ----------------~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l 135 (136)
.+..+++|+++++++|.+...+.+..+.+|+.|++++|.++.+ |..+..+++|+.|++++|.+
T Consensus 175 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 254 (452)
T 3zyi_A 175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254 (452)
T ss_dssp EEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred EEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC
Confidence 2334445555555555444444444444555555555555333 33444455555555554443
No 25
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.81 E-value=2.4e-19 Score=128.53 Aligned_cols=131 Identities=28% Similarity=0.369 Sum_probs=71.7
Q ss_pred CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL 83 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l 83 (136)
+++|++|++++|.+++..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+..|.. +..+++|+.+
T Consensus 417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L 495 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWI 495 (768)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEE
T ss_pred CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH-HhcCCCCCEE
Confidence 444555555555555555555555555555555555555555555555555555555555555444433 4555556666
Q ss_pred Eeccceee-ecc-CCCCCccccEEEcCCCCC-CCCChhhhcCCCCcEEEcCCCcC
Q 039528 84 VLSSTILV-KTE-NFLPTFQLKELGLANCSL-NVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 84 ~l~~~~~~-~~~-~~~~~~~L~~l~l~~n~~-~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
++++|.+. ..+ .+..+++|+.|++++|.+ +.+|..++.+++|+.|++++|.+
T Consensus 496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 66655543 222 234445666666666666 45666666666666666666543
No 26
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.81 E-value=6.6e-19 Score=126.28 Aligned_cols=85 Identities=32% Similarity=0.459 Sum_probs=43.3
Q ss_pred CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL 83 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l 83 (136)
+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++.+|.. +..+++|+.+
T Consensus 465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L 543 (768)
T 3rgz_A 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWL 543 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGGCTTCCEE
T ss_pred CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCCCEE
Confidence 344555555555555445555555555555555555555445555555555555555555554444432 4445555555
Q ss_pred Eeccce
Q 039528 84 VLSSTI 89 (136)
Q Consensus 84 ~l~~~~ 89 (136)
++++|.
T Consensus 544 ~Ls~N~ 549 (768)
T 3rgz_A 544 DLNTNL 549 (768)
T ss_dssp ECCSSE
T ss_pred ECCCCc
Confidence 555443
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=2.2e-19 Score=116.40 Aligned_cols=132 Identities=24% Similarity=0.331 Sum_probs=73.5
Q ss_pred CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCcccc-ccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSG-SLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..+ ..+..+++|+
T Consensus 124 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~ 202 (306)
T 2z66_A 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQ 202 (306)
T ss_dssp TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCC
T ss_pred hccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH-HHhcCCCCCC
Confidence 34555555555555555555555555666666666655543 345555556666666666666653323 2355566666
Q ss_pred EEEeccceeeecc--CCCCCccccEEEcCCCCC-CCCChhhhcCC-CCcEEEcCCCcC
Q 039528 82 VLVLSSTILVKTE--NFLPTFQLKELGLANCSL-NVVPTFLLHQY-DLKYLDLSHNNL 135 (136)
Q Consensus 82 ~l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~-~~~~~~~~~~~-~L~~l~l~~n~l 135 (136)
++++++|.+...+ .+..+++|+.|++++|.+ +..+..+..++ +|++|++++|++
T Consensus 203 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp EEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred EEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 6666666554443 234455666666666666 33344555553 666666666654
No 28
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=1.4e-19 Score=118.55 Aligned_cols=105 Identities=25% Similarity=0.256 Sum_probs=61.8
Q ss_pred CCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEecccee-eecc-CCCCCccccEE
Q 039528 28 LSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTIL-VKTE-NFLPTFQLKEL 105 (136)
Q Consensus 28 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~-~~~~~~~L~~l 105 (136)
+++|++|++++|.++ .+|..+..+++|++|++++|.+. .++.. +..+++|+++++++|.+ ...+ .+..+++|+.|
T Consensus 182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~-l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 258 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258 (328)
T ss_dssp STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGG-GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchh-hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence 444444444444444 44455555666666666666665 34433 55666666666666433 2222 34555677777
Q ss_pred EcCCCCC-CCCChhhhcCCCCcEEEcCCCcC
Q 039528 106 GLANCSL-NVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 106 ~l~~n~~-~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
++++|.+ +.+|..+..+++|+.|++++|.+
T Consensus 259 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp ECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred ECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence 7777666 66777777777777777777654
No 29
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=6.3e-19 Score=113.71 Aligned_cols=130 Identities=32% Similarity=0.371 Sum_probs=85.2
Q ss_pred CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528 3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV 82 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~ 82 (136)
.+++|+.|++++|.+++..+. ..+++|++|++++|.++ .+|..+..+++|++|++++|++++ ++...+..+++|++
T Consensus 53 ~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~l~~L~~ 128 (290)
T 1p9a_G 53 PYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQE 128 (290)
T ss_dssp TCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCC-CCSSTTTTCTTCCE
T ss_pred cCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcc-cCHHHHcCCCCCCE
Confidence 344555555555555432211 44555666666666555 445556677777888888887773 44345777788888
Q ss_pred EEeccceeeecc--CCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcCC
Q 039528 83 LVLSSTILVKTE--NFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 83 l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~ 136 (136)
+++++|.+...+ .+..+++|+.|++++|.++.+|. .+..+++|+.|++++|.++
T Consensus 129 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 888887766554 34566788888888888877775 4567888888888888764
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.81 E-value=7.4e-19 Score=119.21 Aligned_cols=131 Identities=24% Similarity=0.253 Sum_probs=116.4
Q ss_pred CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528 5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV 84 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~ 84 (136)
++|+.+++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+...+..+++|++++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS-IDSRMFENLDKLEVLD 353 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECGGGGTTCTTCCEEE
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC-cChhHhcCcccCCEEE
Confidence 579999999999998889999999999999999999998888899999999999999999974 4445588899999999
Q ss_pred eccceeeecc--CCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcCC
Q 039528 85 LSSTILVKTE--NFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 85 l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~ 136 (136)
+++|.+.... .+..+++|++|++++|.++.+|. .+..+++|++|++++|+++
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 9999886663 56778899999999999977775 5689999999999999874
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=6.1e-19 Score=121.47 Aligned_cols=134 Identities=22% Similarity=0.239 Sum_probs=95.8
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCcccc--ccchhhhccCCCCEEEccCCcCcCCCChHhhhcCcc
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSG--SLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSK 79 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~ 79 (136)
..+++|++|++++|.+++..|..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+.+.+|...+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 457889999999999998788888899999999999998875 455678889999999999999886466555666777
Q ss_pred ceEEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528 80 LEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 80 l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
|+++++++|.+.......-.++|+.|++++|.++.+|..+..+++|++|++++|.+
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l 456 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQL 456 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcC
Confidence 77777777765322111111456666666666666665555666666666666654
No 32
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=7.5e-19 Score=119.03 Aligned_cols=130 Identities=26% Similarity=0.317 Sum_probs=98.5
Q ss_pred CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528 5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV 84 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~ 84 (136)
+.++.|++++|.+....+..|.++++|++|++++|.++...+..|..+++|++|++++|+++ .++...+..+++|++++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCceee
Confidence 46899999999999888889999999999999999999777889999999999999999998 45555688899999999
Q ss_pred eccceeeecc--CCCCCccccEEEcCCCC-CCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528 85 LSSTILVKTE--NFLPTFQLKELGLANCS-LNVVPT-FLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 85 l~~~~~~~~~--~~~~~~~L~~l~l~~n~-~~~~~~-~~~~~~~L~~l~l~~n~l 135 (136)
+++|.+...+ .+..+++|+.|++++|. ++.++. .+..+++|++|++++|.+
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence 9998776554 34445555666655533 243332 344455555555544443
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.80 E-value=9.2e-19 Score=122.44 Aligned_cols=131 Identities=22% Similarity=0.234 Sum_probs=114.2
Q ss_pred CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528 5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV 84 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~ 84 (136)
+++++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+++..| ..+..+++|++++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP-GSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT-TSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh-hhcCCcccCCEEE
Confidence 568999999999998888889999999999999999987778889999999999999999985545 4488899999999
Q ss_pred eccceeeecc--CCCCCccccEEEcCCCCCC--CCChhhhcCCCCcEEEcCCCcCC
Q 039528 85 LSSTILVKTE--NFLPTFQLKELGLANCSLN--VVPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 85 l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~--~~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
+++|.+...+ .+..+.+|++|++++|.+. .+|..++.+++|++|++++|.++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 9999876554 5677889999999999995 57889999999999999998764
No 34
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=9.1e-19 Score=118.96 Aligned_cols=130 Identities=26% Similarity=0.312 Sum_probs=99.4
Q ss_pred CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528 5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV 84 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~ 84 (136)
++++.|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEE
Confidence 46899999999999888899999999999999999999888889999999999999999998 45556688899999999
Q ss_pred eccceeeecc--CCCCCccccEEEcCCCC-CCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528 85 LSSTILVKTE--NFLPTFQLKELGLANCS-LNVVPT-FLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 85 l~~~~~~~~~--~~~~~~~L~~l~l~~n~-~~~~~~-~~~~~~~L~~l~l~~n~l 135 (136)
+++|.+...+ .+..+++|+.|++++|. ++.++. .+..+++|++|++++|.+
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence 9999876654 34445556666665532 344433 344455555555554443
No 35
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=3.1e-19 Score=116.14 Aligned_cols=129 Identities=23% Similarity=0.216 Sum_probs=63.8
Q ss_pred CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccc--cchhh--hccCCCCEEEccCCcCc--------------
Q 039528 5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGS--LSSTI--TSLTSLEYLDLSYNNFE-------------- 66 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~--~~~~~l~~l~l~~~~~~-------------- 66 (136)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+ ..+++|++|++++|.++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 5566666666666655555556666666666666654322 12222 44455555555555544
Q ss_pred -------------CCCChHhhhcCccceEEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCC
Q 039528 67 -------------GPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHN 133 (136)
Q Consensus 67 -------------~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n 133 (136)
+..+...+..+++|+++++++|.+...+.... ++|++|++++|+++.+|. +..+++|++|++++|
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTC
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECCCCCCCCChh-HhhCCCCCEEeccCC
Confidence 32221222334444444444444443332211 355555555555544444 555555666666666
Q ss_pred cC
Q 039528 134 NL 135 (136)
Q Consensus 134 ~l 135 (136)
++
T Consensus 307 ~l 308 (312)
T 1wwl_A 307 PF 308 (312)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 36
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=3.4e-19 Score=128.85 Aligned_cols=133 Identities=27% Similarity=0.369 Sum_probs=119.1
Q ss_pred CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCc-ccc-ccchhhhccC-------CCCEEEccCCcCcCCCCh-H
Q 039528 3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQ-LSG-SLSSTITSLT-------SLEYLDLSYNNFEGPCPL-S 72 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~~~-------~l~~l~l~~~~~~~~~~~-~ 72 (136)
++++|+.|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..+..+. +|++|++++|.+. .+|. .
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 78999999999999999999999999999999999998 887 7888777665 9999999999998 7775 2
Q ss_pred hhhcCccceEEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCC-CcEEEcCCCcCC
Q 039528 73 LLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYD-LKYLDLSHNNLV 136 (136)
Q Consensus 73 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~-L~~l~l~~n~l~ 136 (136)
.+..+++|+.+++++|.+...+.+..+++|+.|++++|.++.+|..+..+++ |+.|++++|.++
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp HHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC
T ss_pred hhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC
Confidence 5889999999999999888777778888999999999999999988999998 999999998764
No 37
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.80 E-value=6.7e-19 Score=123.13 Aligned_cols=132 Identities=20% Similarity=0.313 Sum_probs=80.3
Q ss_pred CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCcccc-ccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSG-SLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
.+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..+ ..+..+++|+
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~ 500 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW-GVFDTLHRLQ 500 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCC
T ss_pred ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh-hhhcccccCC
Confidence 45556666666666655555556666666666666666654 245556666666666666666654333 3355666666
Q ss_pred EEEeccceeeec--cCCCCCccccEEEcCCCCCCCCChhhhcCC-CCcEEEcCCCcC
Q 039528 82 VLVLSSTILVKT--ENFLPTFQLKELGLANCSLNVVPTFLLHQY-DLKYLDLSHNNL 135 (136)
Q Consensus 82 ~l~l~~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~-~L~~l~l~~n~l 135 (136)
++++++|.+... ..+..+++|++|++++|.++.+|..+..++ +|+++++++|++
T Consensus 501 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp EEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred EEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCc
Confidence 666666655443 234555667777777777766666666665 477777776665
No 38
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=6.3e-19 Score=114.23 Aligned_cols=132 Identities=23% Similarity=0.288 Sum_probs=78.3
Q ss_pred CCCcccEEEcCCCcccccCc-ccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcC-CCChHhhhcCccc
Q 039528 3 ELKNLFELNLKGNNVEGHLP-NCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEG-PCPLSLLAHHSKL 80 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~~l 80 (136)
.+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+ ..+..+++|
T Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L 177 (306)
T 2z66_A 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNL 177 (306)
T ss_dssp TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTC
T ss_pred CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch-hHHhhCcCC
Confidence 34555556666665554333 345556666666666666655555556666666666666666653 223 235556666
Q ss_pred eEEEeccceeeecc--CCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528 81 EVLVLSSTILVKTE--NFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 81 ~~l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l 135 (136)
+++++++|.+.... .+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+
T Consensus 178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 66666666654442 34555667777777777755543 566677777777777765
No 39
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=3.1e-18 Score=107.08 Aligned_cols=126 Identities=21% Similarity=0.258 Sum_probs=109.6
Q ss_pred ccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEec
Q 039528 7 LFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLS 86 (136)
Q Consensus 7 L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~ 86 (136)
-+.++.+++.+. .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|+.++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECC
Confidence 467888888887 566544 388999999999999888888999999999999999997 5665667899999999999
Q ss_pred cceeeecc--CCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528 87 STILVKTE--NFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 87 ~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
+|.+...+ .+..+++|+.|++++|.++.+|..+..+++|+.|++++|.++
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCC
T ss_pred CCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCC
Confidence 99887665 356788999999999999999999999999999999999874
No 40
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.79 E-value=1.8e-18 Score=120.10 Aligned_cols=131 Identities=25% Similarity=0.253 Sum_probs=112.0
Q ss_pred CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528 5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV 84 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~ 84 (136)
+.++.|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+.+ .+...+..+++|++++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCcccccccc
Confidence 458899999999998778889999999999999999987777888999999999999999874 4434588899999999
Q ss_pred eccceeeecc--CCCCCccccEEEcCCCCCC--CCChhhhcCCCCcEEEcCCCcCC
Q 039528 85 LSSTILVKTE--NFLPTFQLKELGLANCSLN--VVPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 85 l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~--~~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
+++|.+...+ .+..+.+|++|++++|.+. .+|..++.+++|++|++++|.++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 9998887665 3677889999999999995 47889999999999999998763
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.79 E-value=1.6e-18 Score=118.33 Aligned_cols=131 Identities=28% Similarity=0.331 Sum_probs=62.2
Q ss_pred CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL 83 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l 83 (136)
+++|++|++++|.+++..|..|.++++|++|++++|.++...+..+..+++|++|++++|.+.+..+ ..+..+++|+++
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L 133 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSL 133 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCCh-hHccccccCCEE
Confidence 4444444554444444444444444555555554444443333334444455555555554442222 224444555555
Q ss_pred Eeccceeeecc--CCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528 84 VLSSTILVKTE--NFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 84 ~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l 135 (136)
++++|.+.... .+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence 55554443322 33444455555555555544443 355555555555555543
No 42
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.79 E-value=9.8e-19 Score=111.90 Aligned_cols=132 Identities=21% Similarity=0.215 Sum_probs=88.6
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++.+|.+.+ .+...+..+++|+
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~ 127 (276)
T 2z62_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLK 127 (276)
T ss_dssp TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC-STTCCCTTCTTCC
T ss_pred ccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccc-cCchhcccCCCCC
Confidence 457778888888888886666677888888888888888876666777777888888888877763 3323366777778
Q ss_pred EEEeccceeeec---cCCCCCccccEEEcCCCCCCCCC-hhhhcCCCCc----EEEcCCCc
Q 039528 82 VLVLSSTILVKT---ENFLPTFQLKELGLANCSLNVVP-TFLLHQYDLK----YLDLSHNN 134 (136)
Q Consensus 82 ~l~l~~~~~~~~---~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~----~l~l~~n~ 134 (136)
++++++|.+... ..+..+++|++|++++|.++.++ ..+..+.+++ .+++++|.
T Consensus 128 ~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred EEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 888877766542 23455567777777777775544 2343333333 44444444
No 43
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.79 E-value=2.1e-18 Score=119.90 Aligned_cols=133 Identities=24% Similarity=0.240 Sum_probs=94.5
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccc--cchhhhccCCCCEEEccCCcCcCCCChHhhhcCcc
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGS--LSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSK 79 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~ 79 (136)
..+++|++|++++|.+++..|..+..+++|++|++++|.+++. .|..+..+++|++|++++|.+.+.++...+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 4578899999999999987888889999999999999988753 34567888999999999999886466555666677
Q ss_pred ceEEEeccceeeeccCCCCC-ccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528 80 LEVLVLSSTILVKTENFLPT-FQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 80 l~~l~l~~~~~~~~~~~~~~-~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
|+.+++++|.+.... +... ++|+.|++++|.++.+|..++.+++|++|++++|.+
T Consensus 430 L~~L~l~~n~l~~~~-~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l 485 (562)
T 3a79_B 430 ILVLNLSSNMLTGSV-FRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL 485 (562)
T ss_dssp CCEEECCSSCCCGGG-GSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCC
T ss_pred CCEEECCCCCCCcch-hhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCC
Confidence 777777776653221 1111 356666666666666665555666666666666554
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=7.5e-19 Score=115.96 Aligned_cols=131 Identities=27% Similarity=0.320 Sum_probs=60.0
Q ss_pred CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCCh-HhhhcCccce
Q 039528 3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPL-SLLAHHSKLE 81 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~~~~l~ 81 (136)
++++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++. ..+..+++|+
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQ 152 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCC
T ss_pred cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCc
Confidence 3444555555555555444444455555555555555554333333444555555555555544 2332 2244445555
Q ss_pred EEEeccc-eeeecc--CCCCCccccEEEcCCCCCCCC-ChhhhcCCCCcEEEcCCCc
Q 039528 82 VLVLSST-ILVKTE--NFLPTFQLKELGLANCSLNVV-PTFLLHQYDLKYLDLSHNN 134 (136)
Q Consensus 82 ~l~l~~~-~~~~~~--~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~ 134 (136)
++++++| .+...+ .+..+++|++|++++|.++.+ |..++.+++|++|++++|.
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence 5555554 222221 233444555555555555322 3444444445555554443
No 45
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.79 E-value=3.2e-19 Score=125.65 Aligned_cols=133 Identities=25% Similarity=0.392 Sum_probs=109.8
Q ss_pred CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCc-ccc-ccchhhhcc------CCCCEEEccCCcCcCCCCh-Hh
Q 039528 3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQ-LSG-SLSSTITSL------TSLEYLDLSYNNFEGPCPL-SL 73 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~~------~~l~~l~l~~~~~~~~~~~-~~ 73 (136)
++++|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..+..+ ++|++|++++|.++ .+|. ..
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence 68899999999999998999999999999999999998 887 788888776 89999999999998 6775 24
Q ss_pred hhcCccceEEEeccceee-eccCCCCCccccEEEcCCCCCCCCChhhhcCCC-CcEEEcCCCcCC
Q 039528 74 LAHHSKLEVLVLSSTILV-KTENFLPTFQLKELGLANCSLNVVPTFLLHQYD-LKYLDLSHNNLV 136 (136)
Q Consensus 74 ~~~~~~l~~l~l~~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~-L~~l~l~~n~l~ 136 (136)
+..+++|+++++++|.+. ..+.+..+++|+.|++++|.++.+|..++.+++ |+.|++++|.++
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS
T ss_pred hccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc
Confidence 888899999999998776 556555666788888888877777777777777 778877777653
No 46
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=3.6e-18 Score=110.21 Aligned_cols=125 Identities=26% Similarity=0.331 Sum_probs=75.2
Q ss_pred CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528 3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV 82 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~ 82 (136)
.+++|+.|++++|.+++..+ +..+++|++|++++|.+++ . ..+..+++|++|++++|.+.+ ++ .+..+++|+.
T Consensus 66 ~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~-~~--~l~~l~~L~~ 138 (291)
T 1h6t_A 66 YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISD-IN--GLVHLPQLES 138 (291)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCC-CG--GGGGCTTCCE
T ss_pred cCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCC-Ch--hhcCCCCCCE
Confidence 35666677777776664332 6666667777776666653 2 235666666666666666653 22 2555666666
Q ss_pred EEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528 83 LVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 83 l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
+++++|.+...+.+..+++|+.|++++|.++.++. +..+++|+.|++++|.+
T Consensus 139 L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred EEccCCcCCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcC
Confidence 66666665555445555566666666666655544 55666666666666654
No 47
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=7.1e-19 Score=110.46 Aligned_cols=128 Identities=14% Similarity=0.143 Sum_probs=59.8
Q ss_pred cccEEEcCCCcccccCcccccCCCcccEEEccCCc-cccccchhhhccCCCCEEEccC-CcCcCCCChHhhhcCccceEE
Q 039528 6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQ-LSGSLSSTITSLTSLEYLDLSY-NNFEGPCPLSLLAHHSKLEVL 83 (136)
Q Consensus 6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~~~~~l~~l 83 (136)
++++|++++|.+++..+..+.++++|++|++++|. ++...+..+..+++|++|++++ |.++ .++...+..+++|+++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence 35555555555554444445555555555555554 4433333445555555555554 5554 2232334445555555
Q ss_pred EeccceeeeccCCCCCcccc---EEEcCCC-CCCCCCh-hhhcCCCCc-EEEcCCCc
Q 039528 84 VLSSTILVKTENFLPTFQLK---ELGLANC-SLNVVPT-FLLHQYDLK-YLDLSHNN 134 (136)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~L~---~l~l~~n-~~~~~~~-~~~~~~~L~-~l~l~~n~ 134 (136)
++++|.+...+.+..+.+++ .|++++| .++.++. .+..+++|+ .+++++|.
T Consensus 111 ~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 111 GIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp EEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred eCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence 55555444333333333333 4444444 4433332 244444444 44444443
No 48
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=1.6e-18 Score=118.88 Aligned_cols=106 Identities=20% Similarity=0.222 Sum_probs=51.2
Q ss_pred cccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccCCCCCccccEEEcCC
Q 039528 30 HLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLAN 109 (136)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~ 109 (136)
+|++|++++|.+++..|..+..+++|++|++++|.+++..+......+++|+.|++++|.+...+....+++|+.|++++
T Consensus 121 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~ 200 (487)
T 3oja_A 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS 200 (487)
T ss_dssp SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCS
T ss_pred CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCC
Confidence 33444444444443334444455555555555555554333332224555555555555544443333344555555555
Q ss_pred CCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528 110 CSLNVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 110 n~~~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
|.++.+|..+..+++|+.|++++|.+
T Consensus 201 N~l~~~~~~~~~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 201 NKLAFMGPEFQSAAGVTWISLRNNKL 226 (487)
T ss_dssp SCCCEECGGGGGGTTCSEEECTTSCC
T ss_pred CCCCCCCHhHcCCCCccEEEecCCcC
Confidence 55544444455555555555555544
No 49
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.78 E-value=5.2e-18 Score=103.41 Aligned_cols=126 Identities=23% Similarity=0.314 Sum_probs=104.8
Q ss_pred ccEEEcCCCcccccCcccccCCCcccEEEccCCccccccch-hhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEe
Q 039528 7 LFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSS-TITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL 85 (136)
Q Consensus 7 L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l 85 (136)
-+.++++++.++ .+|..+.. .+++|++++|.+++..+. .+..+++|++|++++|.+++..+ ..+..+++|+++++
T Consensus 10 ~~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-NAFEGASHIQELQL 85 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEEC
T ss_pred CCEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH-hHcCCcccCCEEEC
Confidence 368899999997 56665433 899999999999866554 48899999999999999986545 45888999999999
Q ss_pred ccceeeecc--CCCCCccccEEEcCCCCCCC-CChhhhcCCCCcEEEcCCCcCC
Q 039528 86 SSTILVKTE--NFLPTFQLKELGLANCSLNV-VPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 86 ~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
++|.+...+ .+..+++|++|++++|.++. .|..+..+++|++|++++|+++
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999887665 36778899999999999954 4678899999999999999874
No 50
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.78 E-value=3.2e-18 Score=114.25 Aligned_cols=110 Identities=21% Similarity=0.268 Sum_probs=52.5
Q ss_pred CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL 83 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l 83 (136)
+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|+++
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTL 146 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEE
Confidence 344555555555554444444455555555555555554444444445555555555555554 3333333445555555
Q ss_pred Eeccceeeecc--CCCCCccccEEEcCCCCCCC
Q 039528 84 VLSSTILVKTE--NFLPTFQLKELGLANCSLNV 114 (136)
Q Consensus 84 ~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~ 114 (136)
++++|.+...+ .+..+++|++|++++|.++.
T Consensus 147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred ECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 55554443332 23344455555555555433
No 51
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.78 E-value=2e-18 Score=120.78 Aligned_cols=129 Identities=19% Similarity=0.120 Sum_probs=66.9
Q ss_pred cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEe
Q 039528 6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL 85 (136)
Q Consensus 6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l 85 (136)
.+++|++++|.+++..|..|.++++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+ ..+..+++|+++++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-TALSGPKALKHLFF 112 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT-TTTSSCTTCCEEEC
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh-hhhcccccccEeec
Confidence 35556666666655555555556666666666655555555555555566666665555553323 23555555555555
Q ss_pred ccceeeec--cCCCCCccccEEEcCCCCCCCCC-hhhhcCCCCcEEEcCCCcC
Q 039528 86 SSTILVKT--ENFLPTFQLKELGLANCSLNVVP-TFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 86 ~~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l 135 (136)
++|.+... ..+..+++|++|++++|.++.++ ..+..+++|+.|++++|.+
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 165 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcc
Confidence 55554443 23344445555555555553321 1222255555555555543
No 52
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=1.1e-18 Score=113.53 Aligned_cols=134 Identities=25% Similarity=0.178 Sum_probs=101.1
Q ss_pred CCCCcccEEEcCCCcccccCcccccCC-----CcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCC--ChH-h
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYL-----SHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPC--PLS-L 73 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~-~ 73 (136)
..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|++.+.. +.. .
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 5689999999999999976 7777776 89999999999999877789999999999999999976432 212 1
Q ss_pred hhcCccceEEEeccceeeecc-----CCCCCccccEEEcCCCCCCCCC--hhhhcCCCCcEEEcCCCcCC
Q 039528 74 LAHHSKLEVLVLSSTILVKTE-----NFLPTFQLKELGLANCSLNVVP--TFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 74 ~~~~~~l~~l~l~~~~~~~~~-----~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~ 136 (136)
+..+++|+++++++|.+...+ .+..+++|+.|++++|.++..+ ..+..+++|++|++++|.++
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 267788888888888776332 1134457777777777774433 34455677777777777653
No 53
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.78 E-value=5.8e-19 Score=106.25 Aligned_cols=129 Identities=19% Similarity=0.203 Sum_probs=108.0
Q ss_pred CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528 3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV 82 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~ 82 (136)
.+++|+.|++++|.++. ++......++|++|++++|.+++. ..+..+++|++|++++|.++ .++...+..+++|+.
T Consensus 17 ~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCE
Confidence 56789999999999994 454333344999999999999864 67888999999999999998 455455688999999
Q ss_pred EEeccceeeeccC---CCCCccccEEEcCCCCCCCCChh----hhcCCCCcEEEcCCCcC
Q 039528 83 LVLSSTILVKTEN---FLPTFQLKELGLANCSLNVVPTF----LLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 83 l~l~~~~~~~~~~---~~~~~~L~~l~l~~n~~~~~~~~----~~~~~~L~~l~l~~n~l 135 (136)
+++++|.+...+. +..+++|+.|++++|.++.+|.. ++.+++|+.++++.|..
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 9999998877653 56777999999999999888874 89999999999988763
No 54
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.78 E-value=2.6e-18 Score=117.29 Aligned_cols=131 Identities=22% Similarity=0.267 Sum_probs=115.7
Q ss_pred CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528 5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV 84 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~ 84 (136)
+.++.|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+. .++...+..+++|++++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEE
Confidence 46899999999999888889999999999999999999888899999999999999999998 55656678899999999
Q ss_pred eccceeeecc--CCCCCccccEEEcCCCCCCCC-ChhhhcCCCCcEEEcCCCcCC
Q 039528 85 LSSTILVKTE--NFLPTFQLKELGLANCSLNVV-PTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 85 l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~ 136 (136)
+++|.+.... .+..+++|+.|++++|.++.+ +..+..+++|+.|++++|.++
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence 9999876653 567788999999999999654 468899999999999999764
No 55
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=5.5e-18 Score=110.12 Aligned_cols=83 Identities=18% Similarity=0.242 Sum_probs=39.2
Q ss_pred hhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEE
Q 039528 49 ITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYL 128 (136)
Q Consensus 49 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l 128 (136)
+..+++|++|++++|.+.+ .+. +..+++|+.+++++|.+...+.+..+++|+.|++++|.++.++. +..+++|+.|
T Consensus 125 l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 200 (308)
T 1h6u_A 125 LAGLSNLQVLYLDLNQITN-ISP--LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEV 200 (308)
T ss_dssp GTTCTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEE
T ss_pred hcCCCCCCEEECCCCccCc-Ccc--ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh-hcCCCCCCEE
Confidence 3344444444444444432 111 33444455555555444443334444455555555555544443 4555555555
Q ss_pred EcCCCcC
Q 039528 129 DLSHNNL 135 (136)
Q Consensus 129 ~l~~n~l 135 (136)
++++|.+
T Consensus 201 ~L~~N~l 207 (308)
T 1h6u_A 201 HLKNNQI 207 (308)
T ss_dssp ECTTSCC
T ss_pred EccCCcc
Confidence 5555554
No 56
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=1.1e-17 Score=108.77 Aligned_cols=125 Identities=27% Similarity=0.362 Sum_probs=82.5
Q ss_pred CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528 3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV 82 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~ 82 (136)
.+++|++|++++|.+.+.. . +..+++|++|++++|.+++. ..+..+++|++|++++|.+.+ ++ . +..+++|++
T Consensus 61 ~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~-l~~l~~L~~ 133 (308)
T 1h6u_A 61 YLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VT-P-LAGLSNLQV 133 (308)
T ss_dssp GCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CG-G-GTTCTTCCE
T ss_pred ccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC-ch-h-hcCCCCCCE
Confidence 4566777777777776433 3 66777777777777776642 346667777777777777763 33 2 566677777
Q ss_pred EEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528 83 LVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 83 l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
+++++|.+...+.+..+++|+.|++++|.++.++. +..+++|+.|++++|.+
T Consensus 134 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred EECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCcc
Confidence 77777766655555556677777777777766554 66677777777777665
No 57
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=2e-18 Score=108.42 Aligned_cols=134 Identities=14% Similarity=0.165 Sum_probs=78.2
Q ss_pred CCCCcccEEEcCCCc-ccccCcccccCCCcccEEEccC-CccccccchhhhccCCCCEEEccCCcCcC------------
Q 039528 2 CELKNLFELNLKGNN-VEGHLPNCLKYLSHLKVFDISQ-NQLSGSLSSTITSLTSLEYLDLSYNNFEG------------ 67 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~-l~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~------------ 67 (136)
.++++|+.|++++|. ++...+..|.++++|++|++++ |.+++..+..|..+++|++|++++|.+++
T Consensus 52 ~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~ 131 (239)
T 2xwt_C 52 SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDI 131 (239)
T ss_dssp TTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCS
T ss_pred cCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccccccccccccc
Confidence 346667777777775 6655555666667777777766 66664444555566666666666555442
Q ss_pred -------------CCChHhhhcCccce-EEEeccceeeeccC-CCCCccccEEEcCCCC-CCCCC-hhhhcC-CCCcEEE
Q 039528 68 -------------PCPLSLLAHHSKLE-VLVLSSTILVKTEN-FLPTFQLKELGLANCS-LNVVP-TFLLHQ-YDLKYLD 129 (136)
Q Consensus 68 -------------~~~~~~~~~~~~l~-~l~l~~~~~~~~~~-~~~~~~L~~l~l~~n~-~~~~~-~~~~~~-~~L~~l~ 129 (136)
.++...+..+++|+ ++++++|.+...+. .....+|+.|++++|+ ++.++ ..+..+ ++|+.|+
T Consensus 132 L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~ 211 (239)
T 2xwt_C 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211 (239)
T ss_dssp EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence 22223355556666 66666665544431 1122466677777764 65554 345566 6777777
Q ss_pred cCCCcC
Q 039528 130 LSHNNL 135 (136)
Q Consensus 130 l~~n~l 135 (136)
+++|.+
T Consensus 212 l~~N~l 217 (239)
T 2xwt_C 212 VSQTSV 217 (239)
T ss_dssp CTTCCC
T ss_pred CCCCcc
Confidence 777665
No 58
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.77 E-value=5.1e-19 Score=127.94 Aligned_cols=133 Identities=14% Similarity=0.118 Sum_probs=117.2
Q ss_pred CCCCcccEEEcCCCcccc-----------------cCccccc--CCCcccEEEccCCccccccchhhhccCCCCEEEccC
Q 039528 2 CELKNLFELNLKGNNVEG-----------------HLPNCLK--YLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSY 62 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~ 62 (136)
.++++|+.|++++|.+++ .+|..+. .+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence 467899999999999997 3888877 999999999999999889999999999999999999
Q ss_pred Cc-CcC-CCChHhhhcC-------ccceEEEeccceeeeccC---CCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEc
Q 039528 63 NN-FEG-PCPLSLLAHH-------SKLEVLVLSSTILVKTEN---FLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDL 130 (136)
Q Consensus 63 ~~-~~~-~~~~~~~~~~-------~~l~~l~l~~~~~~~~~~---~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l 130 (136)
|+ +++ .+|.. +..+ ++|++|++++|.+...+. +..+++|+.|++++|.++.+| .++.+++|+.|++
T Consensus 525 N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 525 NRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp CTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEEC
T ss_pred CCCcccccchHH-HHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEEC
Confidence 98 876 56644 4444 499999999998887765 678889999999999999999 8999999999999
Q ss_pred CCCcCC
Q 039528 131 SHNNLV 136 (136)
Q Consensus 131 ~~n~l~ 136 (136)
++|.++
T Consensus 603 s~N~l~ 608 (876)
T 4ecn_A 603 DYNQIE 608 (876)
T ss_dssp CSSCCS
T ss_pred cCCccc
Confidence 999874
No 59
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=1.2e-18 Score=115.38 Aligned_cols=132 Identities=23% Similarity=0.190 Sum_probs=113.1
Q ss_pred CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528 3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV 82 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~ 82 (136)
.+++|+.|++++|.+++..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+.+ ++...+..+++|+.
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~ 140 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQK 140 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccE-ECHHHhCCcccCCE
Confidence 68899999999999998777889999999999999999987777789999999999999999984 43355889999999
Q ss_pred EEeccceeeeccC--C---CCCccccEEEcCCCCCCCCCh-hhhcCCC--CcEEEcCCCcC
Q 039528 83 LVLSSTILVKTEN--F---LPTFQLKELGLANCSLNVVPT-FLLHQYD--LKYLDLSHNNL 135 (136)
Q Consensus 83 l~l~~~~~~~~~~--~---~~~~~L~~l~l~~n~~~~~~~-~~~~~~~--L~~l~l~~n~l 135 (136)
|++++|.+...+. + ..+++|+.|++++|.++.+|. .+..++. ++.+++++|++
T Consensus 141 L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 141 LYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp EECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred EECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 9999998877652 2 457799999999999988884 6777776 48899999976
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=113.53 Aligned_cols=131 Identities=22% Similarity=0.220 Sum_probs=114.6
Q ss_pred CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528 5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV 84 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~ 84 (136)
+++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|++++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEE
Confidence 47999999999999776778999999999999999999777888999999999999999998 56666688999999999
Q ss_pred eccceeeeccC---CCCCccccEEEcCCCC-CCCCC-hhhhcCCCCcEEEcCCCcCC
Q 039528 85 LSSTILVKTEN---FLPTFQLKELGLANCS-LNVVP-TFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 85 l~~~~~~~~~~---~~~~~~L~~l~l~~n~-~~~~~-~~~~~~~~L~~l~l~~n~l~ 136 (136)
+++|.+...+. +..+++|++|++++|. ++.++ ..++.+++|+.|++++|.++
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 99998876654 5778899999999995 66664 57899999999999998763
No 61
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.77 E-value=1.8e-19 Score=126.91 Aligned_cols=132 Identities=15% Similarity=0.182 Sum_probs=117.6
Q ss_pred CCCCcccEEEcCCCccccc-----------------Cccccc--CCCcccEEEccCCccccccchhhhccCCCCEEEccC
Q 039528 2 CELKNLFELNLKGNNVEGH-----------------LPNCLK--YLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSY 62 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~ 62 (136)
.++++|++|++++|.+++. +|..+. ++++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence 4688999999999999985 888888 999999999999999889999999999999999999
Q ss_pred Cc-CcC-CCChHhhhcC------ccceEEEeccceeeeccC---CCCCccccEEEcCCCCCC-CCChhhhcCCCCcEEEc
Q 039528 63 NN-FEG-PCPLSLLAHH------SKLEVLVLSSTILVKTEN---FLPTFQLKELGLANCSLN-VVPTFLLHQYDLKYLDL 130 (136)
Q Consensus 63 ~~-~~~-~~~~~~~~~~------~~l~~l~l~~~~~~~~~~---~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~L~~l~l 130 (136)
|+ +++ .+|.. +..+ ++|+++++++|.+...+. +..+++|++|++++|.++ .+| .++.+++|+.|++
T Consensus 283 n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 283 NRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp CTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred CCCCccccchHH-HHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence 98 886 56654 5444 999999999998877665 677889999999999995 999 8999999999999
Q ss_pred CCCcC
Q 039528 131 SHNNL 135 (136)
Q Consensus 131 ~~n~l 135 (136)
++|.+
T Consensus 361 ~~N~l 365 (636)
T 4eco_A 361 AYNQI 365 (636)
T ss_dssp CSSEE
T ss_pred CCCcc
Confidence 99975
No 62
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=7.6e-18 Score=107.30 Aligned_cols=123 Identities=25% Similarity=0.360 Sum_probs=82.7
Q ss_pred CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL 83 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l 83 (136)
+++|+.|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|++++ ++. ... ++|+.+
T Consensus 40 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~--~~~-~~L~~L 111 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNG--IPS-ACLSRL 111 (263)
T ss_dssp HTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTT--CCC-SSCCEE
T ss_pred cCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCc--ccc-CcccEE
Confidence 4567777777777773 33 56677777777777777764433 6677777777777777763 332 222 667777
Q ss_pred EeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528 84 VLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
++++|.+...+.+..+++|+.|++++|.++.++ .+..+++|+.|++++|.+
T Consensus 112 ~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 112 FLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp ECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCC
T ss_pred EccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcC
Confidence 777776666655666667777777777776654 566677777777777665
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=3.3e-18 Score=111.54 Aligned_cols=128 Identities=22% Similarity=0.193 Sum_probs=72.0
Q ss_pred CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhh-ccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528 5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTIT-SLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL 83 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l 83 (136)
++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++. +. ...+++|+++
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~--~~~l~~L~~L 196 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG--QVVFAKLKTL 196 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC--CCCCTTCCEE
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc--ccccccCCEE
Confidence 4455555555555544444555566666666666666544444442 456666666666665522 21 2235666666
Q ss_pred Eeccceeeecc-CCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528 84 VLSSTILVKTE-NFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 84 ~l~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
++++|.+...+ .+..+++|+.|++++|.++.+|..+..+++|+.+++++|++
T Consensus 197 ~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp ECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCC
T ss_pred ECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCc
Confidence 66666554442 23445566666666666666666666666666666666654
No 64
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=8.1e-18 Score=110.11 Aligned_cols=129 Identities=22% Similarity=0.239 Sum_probs=74.3
Q ss_pred CCcccEEEcCCCcccc--cCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 4 LKNLFELNLKGNNVEG--HLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
+++|+.+++++|.+.. ..+..+..+++|++|++++|.++. +|..+ .++|++|++++|.+.+..+ ..+..+++|+
T Consensus 144 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~--~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~ 219 (330)
T 1xku_A 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDA-ASLKGLNNLA 219 (330)
T ss_dssp CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECT-GGGTTCTTCC
T ss_pred CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCccc--cccCCEEECCCCcCCccCH-HHhcCCCCCC
Confidence 4444555555554432 233444445555555555544432 22222 1455555555555553323 3466677777
Q ss_pred EEEeccceeeecc--CCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528 82 VLVLSSTILVKTE--NFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 82 ~l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
.+++++|.+...+ .+..+++|+.|++++|.++.+|..+..+++|++|++++|.++
T Consensus 220 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp EEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCC
T ss_pred EEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCC
Confidence 7777777665543 345566777777777777777777777777777777777663
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=3.1e-18 Score=111.63 Aligned_cols=128 Identities=20% Similarity=0.194 Sum_probs=104.0
Q ss_pred cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEe
Q 039528 6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL 85 (136)
Q Consensus 6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l 85 (136)
+|++|++++|.+++..+ ..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+......+++|+++++
T Consensus 100 ~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 100 SIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp TCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence 44444455554443322 346789999999999997777788899999999999999985545444457899999999
Q ss_pred ccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528 86 SSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
++|.+...+....+++|++|++++|.++.+|..+..+++|+.|++++|.++
T Consensus 177 ~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 177 QYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp TTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC
T ss_pred CCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc
Confidence 999988777666678999999999999999888999999999999999874
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=3.4e-18 Score=117.22 Aligned_cols=130 Identities=22% Similarity=0.175 Sum_probs=112.9
Q ss_pred CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhh-ccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTIT-SLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV 82 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~ 82 (136)
+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++..+ ...+++|+.
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~---~~~l~~L~~ 195 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG---QVVFAKLKT 195 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC---CCCCTTCCE
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc---cccCCCCCE
Confidence 56788899999999887788889999999999999999987787776 78999999999999985422 346899999
Q ss_pred EEeccceeeecc-CCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528 83 LVLSSTILVKTE-NFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 83 l~l~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
+++++|.+...+ .+..+++|+.|++++|.++.+|..+..+++|+.+++++|.++
T Consensus 196 L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred EECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 999999886664 456777999999999999989999999999999999999874
No 67
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=2.7e-18 Score=105.03 Aligned_cols=127 Identities=17% Similarity=0.213 Sum_probs=108.3
Q ss_pred CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL 83 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l 83 (136)
+++|+.+++++|.+. .++ .+..+++|++|++++|.++. +..+..+++|++|++++|.+++..+.. +..+++|+++
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEE
Confidence 567999999999998 455 68899999999999997753 357888999999999999998544533 7789999999
Q ss_pred Eeccceeee--ccCCCCCccccEEEcCCCC-CCCCChhhhcCCCCcEEEcCCCcCC
Q 039528 84 VLSSTILVK--TENFLPTFQLKELGLANCS-LNVVPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 84 ~l~~~~~~~--~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
++++|.+.. ...+..+++|+.|++++|. ++.++ .+..+++|+.|++++|.++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc
Confidence 999998876 3456778899999999998 78887 7899999999999999874
No 68
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=6e-18 Score=118.44 Aligned_cols=111 Identities=22% Similarity=0.276 Sum_probs=56.7
Q ss_pred CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL 83 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l 83 (136)
+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+. .+|...+..+++|++|
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTL 152 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEE
Confidence 345555555555555444445555555555555555555444444555555555555555554 3333334455555555
Q ss_pred Eeccceeeecc--CCCCCccccEEEcCCCCCCCC
Q 039528 84 VLSSTILVKTE--NFLPTFQLKELGLANCSLNVV 115 (136)
Q Consensus 84 ~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~ 115 (136)
++++|.+...+ .+..+++|+.|++++|.++.+
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 55555443332 234444555555555555433
No 69
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.77 E-value=7.1e-18 Score=114.40 Aligned_cols=131 Identities=24% Similarity=0.285 Sum_probs=110.6
Q ss_pred CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccc-cchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528 5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGS-LSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL 83 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l 83 (136)
+++++|++++|.+++..|..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..+ ..+..+++|+++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET-GAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT-TTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh-hhccCcccCCEE
Confidence 5689999999999988888999999999999999988644 45678899999999999999985545 448889999999
Q ss_pred Eeccceeee--cc--CCCCCccccEEEcCCCCCCCC-Chh-hhcCCCCcEEEcCCCcCC
Q 039528 84 VLSSTILVK--TE--NFLPTFQLKELGLANCSLNVV-PTF-LLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 84 ~l~~~~~~~--~~--~~~~~~~L~~l~l~~n~~~~~-~~~-~~~~~~L~~l~l~~n~l~ 136 (136)
++++|.+.. .. .+..+++|++|++++|.++.+ |.. +..+++|++|++++|.++
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 999998764 22 367788999999999999655 544 889999999999999763
No 70
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.77 E-value=9.7e-18 Score=118.68 Aligned_cols=130 Identities=24% Similarity=0.237 Sum_probs=94.5
Q ss_pred CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528 5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV 84 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~ 84 (136)
+++++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.++ .++...+..+++|++++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEE
Confidence 45778888888887666667778888888888888877777777778888888888888776 45544577778888888
Q ss_pred eccceeeecc--CCCCCccccEEEcCCCCCC-CCChhhhcCCCCcEEEcCCCcC
Q 039528 85 LSSTILVKTE--NFLPTFQLKELGLANCSLN-VVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 85 l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~l 135 (136)
+++|.+...+ .+..+++|++|++++|.++ ..+..++.+++|++|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc
Confidence 8887665543 4566667778888777773 3445666777777777777655
No 71
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=7e-18 Score=108.87 Aligned_cols=126 Identities=27% Similarity=0.318 Sum_probs=110.2
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
..+++|++|++++|.+++ + +.+..+++|++|++++|.+++. ..+..+++|++|++++|.+++ + ..+..+++|+
T Consensus 87 ~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~-~--~~l~~l~~L~ 159 (291)
T 1h6t_A 87 ANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I--TVLSRLTKLD 159 (291)
T ss_dssp TTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC-C--GGGGGCTTCS
T ss_pred ccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc-c--hhhccCCCCC
Confidence 568899999999999985 3 3488999999999999999854 568889999999999999984 3 3488899999
Q ss_pred EEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528 82 VLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 82 ~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
++++++|.+...+.+..+++|+.|++++|.++.++. +..+++|+.|++++|.+
T Consensus 160 ~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 160 TLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp EEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEE
T ss_pred EEEccCCccccchhhcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcc
Confidence 999999998877667888899999999999988864 88999999999999875
No 72
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.76 E-value=3.5e-18 Score=118.24 Aligned_cols=130 Identities=22% Similarity=0.185 Sum_probs=93.9
Q ss_pred CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528 5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV 84 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~ 84 (136)
+++++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+...+..+++|++++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEEE
Confidence 467888888888877667777788888888888888776666777778888888888888774 4444577778888888
Q ss_pred eccceeeec---cCCCCCccccEEEcCCCC-CCCCC-hhhhcCCCCcEEEcCCCcC
Q 039528 85 LSSTILVKT---ENFLPTFQLKELGLANCS-LNVVP-TFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 85 l~~~~~~~~---~~~~~~~~L~~l~l~~n~-~~~~~-~~~~~~~~L~~l~l~~n~l 135 (136)
+++|.+... ..+..+++|++|++++|. ++.+| ..+..+++|++|++++|.+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 888766532 245666677777777777 46665 3667777777777776655
No 73
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.76 E-value=5.7e-18 Score=113.06 Aligned_cols=132 Identities=20% Similarity=0.249 Sum_probs=114.3
Q ss_pred CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL 83 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l 83 (136)
+++++.++++++.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ ..+..+++|+++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH-HHhcCCCCCCEE
Confidence 5788999999999996655668899999999999999987777789999999999999999985444 558899999999
Q ss_pred EeccceeeeccC--CCCCccccEEEcCCCCCCCCC-hhhhcCCCCcEEEcCCCcCC
Q 039528 84 VLSSTILVKTEN--FLPTFQLKELGLANCSLNVVP-TFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 84 ~l~~~~~~~~~~--~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~ 136 (136)
++++|.+...+. +..+++|++|++++|.++.++ ..+..+++|++|++++|.++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 999998877763 567889999999999996665 57889999999999999864
No 74
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.76 E-value=2.4e-17 Score=100.55 Aligned_cols=123 Identities=20% Similarity=0.247 Sum_probs=104.1
Q ss_pred cEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEecc
Q 039528 8 FELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSS 87 (136)
Q Consensus 8 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~ 87 (136)
+.++++++.++ .+|..+ .+.+++|++++|.++ .+|..+..+++|++|++++|.+++ ++...+..+++|+++++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST-LSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCE-eCHhHccCCCCCCEEECCC
Confidence 67889999988 566544 358999999999998 667889999999999999999984 4545688999999999999
Q ss_pred ceeeecc--CCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528 88 TILVKTE--NFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 88 ~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l 135 (136)
|.+...+ ++..+++|+.|++++|.++.+|. .+..+++|+.+++++|++
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 9887665 46778899999999999988776 688899999999999976
No 75
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.76 E-value=9.6e-18 Score=117.31 Aligned_cols=132 Identities=22% Similarity=0.205 Sum_probs=90.0
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+...+..+++|+
T Consensus 275 ~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 275 HCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred ccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 45677888888888887 67777778888888888888887666677777788888888877776555555566677777
Q ss_pred EEEeccceeeecc----CCCCCccccEEEcCCCCCC-CCChhhhcCCCCcEEEcCCCc
Q 039528 82 VLVLSSTILVKTE----NFLPTFQLKELGLANCSLN-VVPTFLLHQYDLKYLDLSHNN 134 (136)
Q Consensus 82 ~l~l~~~~~~~~~----~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~ 134 (136)
++++++|.+.... .+..+++|++|++++|.+. ..|..+..+++|+.|++++|.
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence 7777776654432 3455556666666666663 334455555666666665554
No 76
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.76 E-value=4.2e-18 Score=117.86 Aligned_cols=132 Identities=27% Similarity=0.303 Sum_probs=103.4
Q ss_pred CCCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCC-CChHhhhcCcc
Q 039528 1 LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGP-CPLSLLAHHSK 79 (136)
Q Consensus 1 ~~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~~~ 79 (136)
|.++++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+. .+ ..+..+++
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~l~~ 124 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT-SLFPNLTN 124 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSS-CSCTTCTT
T ss_pred hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchh-hhhhccCC
Confidence 35688999999999999988888899999999999999999877777799999999999999999742 23 34778899
Q ss_pred ceEEEeccce-eeecc--CCCCCccccEEEcCCCCCC-CCChhhhcCCCCcEEEcCCC
Q 039528 80 LEVLVLSSTI-LVKTE--NFLPTFQLKELGLANCSLN-VVPTFLLHQYDLKYLDLSHN 133 (136)
Q Consensus 80 l~~l~l~~~~-~~~~~--~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~L~~l~l~~n 133 (136)
|+++++++|. +...+ .+..+++|++|++++|.++ ..|..++.+++|+.|+++.|
T Consensus 125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 9999999986 44443 5677778999999988884 45555555444444444433
No 77
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=2.7e-17 Score=102.24 Aligned_cols=125 Identities=21% Similarity=0.285 Sum_probs=106.3
Q ss_pred cEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEecc
Q 039528 8 FELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSS 87 (136)
Q Consensus 8 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~ 87 (136)
+.++.+++.++ .+|..+. +.++.|++++|.+++..+..+..+++|++|++++|.+++..+ ..+..+++|+++++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP-DAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECT-TTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH-HHhhCCcCCCEEECCC
Confidence 57888899888 5665443 689999999999997777789999999999999999985444 4588999999999999
Q ss_pred ceeeeccC--CCCCccccEEEcCCCCCCCC-ChhhhcCCCCcEEEcCCCcCC
Q 039528 88 TILVKTEN--FLPTFQLKELGLANCSLNVV-PTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 88 ~~~~~~~~--~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~ 136 (136)
|.+...+. +..+++|+.|++++|.++.+ +..+..+++|+.|++++|.++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 141 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC
Confidence 99877653 56788999999999999665 568899999999999999874
No 78
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=4.6e-18 Score=108.29 Aligned_cols=125 Identities=25% Similarity=0.282 Sum_probs=106.9
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
..+++|+.|++++|.+++..+ +..+++|++|++++|.+++. +. +.. ++|++|++++|++++ ++ .+..+++|+
T Consensus 60 ~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~-~~--~l~~l~~L~ 131 (263)
T 1xeu_A 60 QFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRD-TD--SLIHLKNLE 131 (263)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSB-SG--GGTTCTTCC
T ss_pred hhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCC-Ch--hhcCccccc
Confidence 357889999999999996444 89999999999999999853 33 223 899999999999984 43 388899999
Q ss_pred EEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528 82 VLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 82 ~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
.+++++|.+...+.+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+
T Consensus 132 ~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 132 ILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp EEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred EEECCCCcCCCChHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcc
Confidence 9999999998887777888999999999999777 6788999999999998875
No 79
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.75 E-value=3.2e-17 Score=107.25 Aligned_cols=36 Identities=31% Similarity=0.289 Sum_probs=22.8
Q ss_pred ccccEEEcCCCCCCCC-ChhhhcCCCCcEEEcCCCcC
Q 039528 100 FQLKELGLANCSLNVV-PTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 100 ~~L~~l~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l 135 (136)
++|+.|++++|.++.+ +..+..+++|+.|++++|.+
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 228 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 3556666666666443 45666777777777777765
No 80
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.75 E-value=3.1e-18 Score=105.47 Aligned_cols=110 Identities=25% Similarity=0.283 Sum_probs=94.5
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ ++...+..+++|+
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~ 127 (208)
T 2o6s_A 49 DELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLK 127 (208)
T ss_dssp TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred cccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc-cCHhHhccCCcCC
Confidence 468899999999999997666678899999999999999986666678899999999999999984 5545578899999
Q ss_pred EEEeccceeeecc--CCCCCccccEEEcCCCCC
Q 039528 82 VLVLSSTILVKTE--NFLPTFQLKELGLANCSL 112 (136)
Q Consensus 82 ~l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~ 112 (136)
++++++|.+...+ .+..+++|+.|++++|.+
T Consensus 128 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 128 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred EEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 9999999887665 356778999999999987
No 81
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=8.8e-18 Score=117.59 Aligned_cols=134 Identities=20% Similarity=0.200 Sum_probs=109.1
Q ss_pred CCCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccc
Q 039528 1 LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKL 80 (136)
Q Consensus 1 ~~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l 80 (136)
|.++++|++|++++|.+++..+.+|.++++|++|++++|.+++..++.|..+++|++|++++|+++ .++...++.+++|
T Consensus 72 f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L 150 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTL 150 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTC
T ss_pred HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCccc
Confidence 467899999999999999877888999999999999999998777778999999999999999998 4554558899999
Q ss_pred eEEEeccceeeecc---CCCCCccccEEEcCCCCCCCCC-hhhhcCCC----CcEEEcCCCcC
Q 039528 81 EVLVLSSTILVKTE---NFLPTFQLKELGLANCSLNVVP-TFLLHQYD----LKYLDLSHNNL 135 (136)
Q Consensus 81 ~~l~l~~~~~~~~~---~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~----L~~l~l~~n~l 135 (136)
+++++++|.+.... .+..++.|++|++++|.++.++ ..+..+.+ ...++++.|.+
T Consensus 151 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l 213 (635)
T 4g8a_A 151 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 213 (635)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred CeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcc
Confidence 99999999875432 3466779999999999996554 44544333 33667776654
No 82
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=1.5e-17 Score=116.43 Aligned_cols=132 Identities=20% Similarity=0.251 Sum_probs=114.7
Q ss_pred CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL 83 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l 83 (136)
+.+++.++++++.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+. +...+..+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEE
Confidence 46789999999999976667788999999999999999987788999999999999999999854 44557899999999
Q ss_pred EeccceeeeccC--CCCCccccEEEcCCCCCCCCC-hhhhcCCCCcEEEcCCCcCC
Q 039528 84 VLSSTILVKTEN--FLPTFQLKELGLANCSLNVVP-TFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 84 ~l~~~~~~~~~~--~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~ 136 (136)
++++|.+...+. +..+++|++|++++|.++.++ ..++.+++|+.|++++|.++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence 999998877653 577889999999999996555 57899999999999999864
No 83
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=1.8e-17 Score=116.09 Aligned_cols=125 Identities=26% Similarity=0.319 Sum_probs=69.4
Q ss_pred CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528 3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV 82 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~ 82 (136)
.+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+ ++ .+..+++|+.
T Consensus 63 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l~--~l~~l~~L~~ 135 (605)
T 1m9s_A 63 YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISD-IN--GLVHLPQLES 135 (605)
T ss_dssp GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCC-CG--GGGGCTTCSE
T ss_pred cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCC-Cc--cccCCCccCE
Confidence 35666777777776664332 56666666666666666532 245556666666666666552 22 2445556666
Q ss_pred EEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528 83 LVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 83 l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
|++++|.+...+.+..+++|+.|++++|.++.++. +..+++|+.|++++|.+
T Consensus 136 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 136 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred EECCCCccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCC
Confidence 66666555544444445555555555555544433 45555555555555544
No 84
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.75 E-value=6.5e-17 Score=97.28 Aligned_cols=126 Identities=25% Similarity=0.294 Sum_probs=100.6
Q ss_pred ccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEec
Q 039528 7 LFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLS 86 (136)
Q Consensus 7 L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~ 86 (136)
.+.++++++.++ .+|..+ .+++++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|+.++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECC
Confidence 567888888887 455433 368999999999988666667788999999999999997 4554557788999999999
Q ss_pred cceeeeccC--CCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcCC
Q 039528 87 STILVKTEN--FLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 87 ~~~~~~~~~--~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~ 136 (136)
+|.+...+. +..+++|++|++++|.++.+|. .+..+++|+++++++|+++
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 988876653 4667799999999999977776 4577899999999999864
No 85
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.75 E-value=8.9e-18 Score=115.68 Aligned_cols=133 Identities=24% Similarity=0.206 Sum_probs=112.2
Q ss_pred CCCCCcccEEEcCCCcccc--cCcccccCCCcccEEEccCCccccccch-hhhccCCCCEEEccCCcCcCCCChHhhhcC
Q 039528 1 LCELKNLFELNLKGNNVEG--HLPNCLKYLSHLKVFDISQNQLSGSLSS-TITSLTSLEYLDLSYNNFEGPCPLSLLAHH 77 (136)
Q Consensus 1 ~~~l~~L~~l~l~~~~l~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~ 77 (136)
+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++.+|. .+..+++|++|++++|.+++..+.. + .
T Consensus 344 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l--~ 420 (520)
T 2z7x_B 344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC-L--P 420 (520)
T ss_dssp CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS-C--C
T ss_pred hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhh-h--c
Confidence 3568899999999999996 4567789999999999999999874555 4778899999999999997554432 2 2
Q ss_pred ccceEEEeccceeeeccC-CCCCccccEEEcCCCCCCCCChh-hhcCCCCcEEEcCCCcCC
Q 039528 78 SKLEVLVLSSTILVKTEN-FLPTFQLKELGLANCSLNVVPTF-LLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 78 ~~l~~l~l~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~l~ 136 (136)
++|+.+++++|.+...+. +..+++|++|++++|.++.+|.. +..+++|+.+++++|+++
T Consensus 421 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 421 PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence 789999999998877653 45778999999999999989975 889999999999999874
No 86
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.75 E-value=9e-18 Score=116.56 Aligned_cols=135 Identities=21% Similarity=0.213 Sum_probs=113.8
Q ss_pred CCCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccc
Q 039528 1 LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKL 80 (136)
Q Consensus 1 ~~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l 80 (136)
|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+.+ ++...+..+++|
T Consensus 48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L 126 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTL 126 (570)
T ss_dssp TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC-STTCSCTTCTTC
T ss_pred hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccccc-CCCccccccccc
Confidence 4578999999999999998778889999999999999999987777889999999999999999974 443347889999
Q ss_pred eEEEeccceeeec---cCCCCCccccEEEcCCCCCCCCC-hhhhcCCCC----cEEEcCCCcCC
Q 039528 81 EVLVLSSTILVKT---ENFLPTFQLKELGLANCSLNVVP-TFLLHQYDL----KYLDLSHNNLV 136 (136)
Q Consensus 81 ~~l~l~~~~~~~~---~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L----~~l~l~~n~l~ 136 (136)
+++++++|.+... ..+..+++|++|++++|.++.++ ..++.+.+| +.+++++|.++
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~ 190 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCce
Confidence 9999999987652 34667789999999999996654 567777777 78999888753
No 87
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.74 E-value=4.9e-17 Score=115.09 Aligned_cols=61 Identities=31% Similarity=0.370 Sum_probs=29.8
Q ss_pred hcCccceEEEeccceeeecc--CCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528 75 AHHSKLEVLVLSSTILVKTE--NFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 75 ~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l 135 (136)
..+++|+.+++++|.+...+ .+..+++|+.|++++|.++.+|. .+..+++|+.|++++|.+
T Consensus 533 ~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 533 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred cCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence 33444444444444443332 23444455555555555544443 334555555555555554
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.73 E-value=6.9e-18 Score=109.66 Aligned_cols=129 Identities=25% Similarity=0.214 Sum_probs=63.8
Q ss_pred CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccc--cc--hhhhccCCCCEEEccCCcCcCCCCh---Hhhhc
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGS--LS--STITSLTSLEYLDLSYNNFEGPCPL---SLLAH 76 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~--~~~~~~~~l~~l~l~~~~~~~~~~~---~~~~~ 76 (136)
+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+ ..+..+++|++|++++|+++ .++. ..+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 56677777777777655556666677777777777665321 11 11234455555555555553 1111 12334
Q ss_pred CccceEEEeccceeeec-c-CCCCC---ccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528 77 HSKLEVLVLSSTILVKT-E-NFLPT---FQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 77 ~~~l~~l~l~~~~~~~~-~-~~~~~---~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
+++|+++++++|.+... + .+..+ ++|++|++++|.++.+|..+. ++|+.|++++|.+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l 284 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRL 284 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcC
Confidence 45555555555554333 1 12111 345555555555544444332 3444444444443
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=107.35 Aligned_cols=132 Identities=22% Similarity=0.222 Sum_probs=105.1
Q ss_pred CCCCCcccEEEcCCCccccc--C--cccccCCCcccEEEccCCccccccch----hhhccCCCCEEEccCCcCcCCCChH
Q 039528 1 LCELKNLFELNLKGNNVEGH--L--PNCLKYLSHLKVFDISQNQLSGSLSS----TITSLTSLEYLDLSYNNFEGPCPLS 72 (136)
Q Consensus 1 ~~~l~~L~~l~l~~~~l~~~--~--~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~l~~l~l~~~~~~~~~~~~ 72 (136)
|..+++|++|++++|.+.+. . +..+..+++|++|++++|.++. .+. .+..+++|++|++++|++.+..|..
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~ 243 (310)
T 4glp_A 165 VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPS 243 (310)
T ss_dssp CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence 34688999999999997642 2 2334689999999999999973 333 2567899999999999998665543
Q ss_pred hhhcC---ccceEEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528 73 LLAHH---SKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 73 ~~~~~---~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
+..+ ++|+++++++|.+...+... .++|++|++++|.++.+|. +..+++|+.|++++|+++
T Consensus 244 -~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 244 -APRCMWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp -CSSCCCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred -HHhccCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence 3343 79999999999988665432 2699999999999988765 688899999999999985
No 90
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.72 E-value=7.6e-17 Score=106.01 Aligned_cols=36 Identities=14% Similarity=0.156 Sum_probs=15.1
Q ss_pred CccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528 99 TFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 99 ~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
+++|+.|++++|.++.++. +..+++|+.+++++|.+
T Consensus 310 l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 310 LTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp CTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred cccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence 3344444444444433332 44444444444444443
No 91
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.72 E-value=3.7e-17 Score=118.33 Aligned_cols=131 Identities=19% Similarity=0.172 Sum_probs=98.5
Q ss_pred CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccc-cchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGS-LSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV 82 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~ 82 (136)
.+++++|++++|.+++..+..|.++++|++|++++|...+. .|..+..+++|++|++++|.+.+..| ..+..+++|++
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP-DAFQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT-TSSCSCSSCCC
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH-hHccCCcccCE
Confidence 35688888888888877778888888888888888854333 36778888888888888888875444 34778888888
Q ss_pred EEeccceeee--cc--CCCCCccccEEEcCCCCCCCC--ChhhhcCCCCcEEEcCCCcC
Q 039528 83 LVLSSTILVK--TE--NFLPTFQLKELGLANCSLNVV--PTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 83 l~l~~~~~~~--~~--~~~~~~~L~~l~l~~n~~~~~--~~~~~~~~~L~~l~l~~n~l 135 (136)
|++++|.+.. .. .+..+++|++|++++|.++.+ +..++.+++|++|++++|.+
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 8888887654 22 256777888888888888443 24678888888888888765
No 92
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.72 E-value=1e-16 Score=111.45 Aligned_cols=125 Identities=23% Similarity=0.245 Sum_probs=87.2
Q ss_pred cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEe
Q 039528 6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL 85 (136)
Q Consensus 6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l 85 (136)
..+.++++++.++. +|..+. +++++|++++|.+++..+..+..+++|++|++++|.+++..+ ..+..+++|+++++
T Consensus 32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCCEEEC
Confidence 34677777777773 554432 677777887777776666677777778888887777764333 34667777788888
Q ss_pred ccceeeeccCCCCCccccEEEcCCCCCCCC--ChhhhcCCCCcEEEcCCCcC
Q 039528 86 SSTILVKTENFLPTFQLKELGLANCSLNVV--PTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~--~~~~~~~~~L~~l~l~~n~l 135 (136)
++|.+...+.. .+.+|++|++++|.++.+ |..++.+++|++|++++|.+
T Consensus 108 s~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 108 SHNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp TTSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred CCCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc
Confidence 77777666544 566777888877777543 36777777777777777765
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=9.6e-17 Score=112.48 Aligned_cols=126 Identities=26% Similarity=0.307 Sum_probs=110.0
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
..+++|+.|++++|.+.+ + +.+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+ + ..+..+++|+
T Consensus 84 ~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l--~~l~~l~~L~ 156 (605)
T 1m9s_A 84 TNLKNLGWLFLDENKIKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I--TVLSRLTKLD 156 (605)
T ss_dssp GGCTTCCEEECCSSCCCC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCC-C--GGGGSCTTCS
T ss_pred ccCCCCCEEECcCCCCCC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCC-c--hhhcccCCCC
Confidence 467899999999999985 3 3688999999999999999853 568899999999999999984 3 3488999999
Q ss_pred EEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528 82 VLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 82 ~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
.|++++|.+.....+..+++|+.|++++|.++.++ .+..+++|+.|++++|.+
T Consensus 157 ~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 157 TLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp EEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred EEECcCCcCCCchhhccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcC
Confidence 99999998877766788889999999999998875 688999999999999875
No 94
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.71 E-value=5.2e-17 Score=106.37 Aligned_cols=130 Identities=22% Similarity=0.277 Sum_probs=63.7
Q ss_pred cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcC------------------
Q 039528 6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEG------------------ 67 (136)
Q Consensus 6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~------------------ 67 (136)
+++.|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+..
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~ 134 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNR 134 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCc
Confidence 34555555555554444445555555555555555544444445555555555555444431
Q ss_pred --CCChHhhhcCccceEEEeccceeeec----cCCCCC--------------------ccccEEEcCCCCCCCCC-hhhh
Q 039528 68 --PCPLSLLAHHSKLEVLVLSSTILVKT----ENFLPT--------------------FQLKELGLANCSLNVVP-TFLL 120 (136)
Q Consensus 68 --~~~~~~~~~~~~l~~l~l~~~~~~~~----~~~~~~--------------------~~L~~l~l~~n~~~~~~-~~~~ 120 (136)
..+...+..+++|+++++++|.+... ..+..+ .+|++|++++|.++.++ ..+.
T Consensus 135 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~ 214 (332)
T 2ft3_A 135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLL 214 (332)
T ss_dssp CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSST
T ss_pred cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhc
Confidence 22333355566666666666555321 111111 23444455555553333 3455
Q ss_pred cCCCCcEEEcCCCcC
Q 039528 121 HQYDLKYLDLSHNNL 135 (136)
Q Consensus 121 ~~~~L~~l~l~~n~l 135 (136)
.+++|+.|++++|.+
T Consensus 215 ~l~~L~~L~L~~N~l 229 (332)
T 2ft3_A 215 RYSKLYRLGLGHNQI 229 (332)
T ss_dssp TCTTCSCCBCCSSCC
T ss_pred CCCCCCEEECCCCcC
Confidence 566666666666654
No 95
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=8e-17 Score=100.11 Aligned_cols=110 Identities=18% Similarity=0.181 Sum_probs=97.5
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+ ..+..+++|+
T Consensus 54 ~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~ 132 (220)
T 2v70_A 54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN-DSFIGLSSVR 132 (220)
T ss_dssp GGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT-TSSTTCTTCS
T ss_pred ccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECH-hHcCCCccCC
Confidence 457899999999999998777889999999999999999998778889999999999999999985544 4588899999
Q ss_pred EEEeccceeeecc--CCCCCccccEEEcCCCCC
Q 039528 82 VLVLSSTILVKTE--NFLPTFQLKELGLANCSL 112 (136)
Q Consensus 82 ~l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~ 112 (136)
.+++++|.+.... .+..+++|+.|++++|.+
T Consensus 133 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 133 LLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp EEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred EEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 9999999887663 567788999999999998
No 96
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.71 E-value=3.3e-16 Score=102.98 Aligned_cols=107 Identities=21% Similarity=0.259 Sum_probs=61.5
Q ss_pred ccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccCCCCCccccE
Q 039528 25 LKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKE 104 (136)
Q Consensus 25 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~ 104 (136)
+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+ .+ .+..+++|+.+++++|.+...+.+..+++|+.
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~ 291 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-IN--AVKDLTKLKMLNVGSNQISDISVLNNLSQLNS 291 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-Ch--hHhcCCCcCEEEccCCccCCChhhcCCCCCCE
Confidence 4445555555555555543222 4555566666666665542 22 25556666666666666555554555556677
Q ss_pred EEcCCCCCCC-CChhhhcCCCCcEEEcCCCcCC
Q 039528 105 LGLANCSLNV-VPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 105 l~l~~n~~~~-~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
|++++|.++. .+..++.+++|+.|++++|.++
T Consensus 292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp EECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred EECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 7777766643 3345666777777777777653
No 97
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.71 E-value=1.7e-16 Score=108.26 Aligned_cols=123 Identities=25% Similarity=0.343 Sum_probs=56.0
Q ss_pred CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL 83 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l 83 (136)
+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++.+ .+. +..+++|+.+
T Consensus 242 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L 314 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED-ISP--ISNLKNLTYL 314 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSC-CGG--GGGCTTCSEE
T ss_pred CCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccC-chh--hcCCCCCCEE
Confidence 4556666666665553322 4555555555555555543222 4444555555555555442 111 3344444555
Q ss_pred EeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCc
Q 039528 84 VLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNN 134 (136)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~ 134 (136)
++++|.+.....+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.
T Consensus 315 ~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 315 TLYFNNISDISPVSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp ECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSC
T ss_pred ECcCCcCCCchhhccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCc
Confidence 55444443333233333444444444444333 233344444444444443
No 98
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.70 E-value=5.6e-17 Score=117.38 Aligned_cols=134 Identities=17% Similarity=0.177 Sum_probs=98.7
Q ss_pred CCCCCcccEEEcCCCcccccC-cccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCCh-HhhhcCc
Q 039528 1 LCELKNLFELNLKGNNVEGHL-PNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPL-SLLAHHS 78 (136)
Q Consensus 1 ~~~l~~L~~l~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~~~ 78 (136)
|.++++|++|++++|...+.+ |..|.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+. ..+..++
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 356788899999888554444 67788899999999999988877788888889999999999888764442 2467788
Q ss_pred cceEEEeccceeeecc---CCCCCccccEEEcCCCCC-CCCChhhhcC--CCCcEEEcCCCc
Q 039528 79 KLEVLVLSSTILVKTE---NFLPTFQLKELGLANCSL-NVVPTFLLHQ--YDLKYLDLSHNN 134 (136)
Q Consensus 79 ~l~~l~l~~~~~~~~~---~~~~~~~L~~l~l~~n~~-~~~~~~~~~~--~~L~~l~l~~n~ 134 (136)
+|++|++++|.+.... .+..+++|++|++++|.+ +..+..+..+ ++|+.|++++|.
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCc
Confidence 8999999988775542 356777888888888888 3344555444 455555555544
No 99
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.70 E-value=1.2e-16 Score=104.61 Aligned_cols=126 Identities=20% Similarity=0.249 Sum_probs=105.9
Q ss_pred CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528 5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV 84 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~ 84 (136)
.+++.++++++.+. .+|..+ .+.+++|++++|.+++..+..+..+++|++|++++|.+++..+ ..+..+++|++++
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE-KAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG-GGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH-hHhhCcCCCCEEE
Confidence 36899999999988 566655 3689999999999987777889999999999999999985444 4588999999999
Q ss_pred eccceeeeccCCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528 85 LSSTILVKTENFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 85 l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l 135 (136)
+++|.+...+.... .+|++|++++|.++.++. .+..+++|+.|++++|.+
T Consensus 109 L~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp CCSSCCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred CCCCcCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence 99998876653322 689999999999977775 688899999999999876
No 100
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.70 E-value=2.9e-16 Score=107.04 Aligned_cols=125 Identities=23% Similarity=0.346 Sum_probs=75.8
Q ss_pred CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528 3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV 82 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~ 82 (136)
.+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|+.
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~ 335 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQR 335 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCE
T ss_pred cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh---hccCccCCE
Confidence 45666666666666664322 5566666666666666654322 5566666666666666654322 455666666
Q ss_pred EEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528 83 LVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 83 l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
+++++|.+...+.+..+++|+.|++++|.++.++. +..+++|+.|++++|.+
T Consensus 336 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 336 LFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp EECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEE
T ss_pred eECCCCccCCchhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcc
Confidence 66666666555555556666666666666644443 56666666666666654
No 101
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=8.1e-17 Score=114.97 Aligned_cols=114 Identities=23% Similarity=0.213 Sum_probs=94.4
Q ss_pred cCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeecc-CCCC
Q 039528 20 HLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTE-NFLP 98 (136)
Q Consensus 20 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~ 98 (136)
..+..+..++.|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|.. +..+++|+.|++++|.+...+ .+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~Ls~N~l~~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAE-IKNLSNLRVLDLSHNRLTSLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGG-GGGGTTCCEEECTTSCCSSCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChh-hhCCCCCCEEeCcCCcCCccChhhcC
Confidence 34667888999999999999988 67777778999999999999998 77754 788999999999999887665 4567
Q ss_pred CccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528 99 TFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 99 ~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
+.+|+.|++++|.++.+|..++.+++|+.|++++|.++
T Consensus 292 l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp GTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 77999999999999999988999999999999999874
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.69 E-value=1.7e-17 Score=110.67 Aligned_cols=134 Identities=19% Similarity=0.182 Sum_probs=83.2
Q ss_pred CCCcccEEEcCCCcccc----cCcccccCCCcccEEEccCCccccccchhh----hcc---------CCCCEEEccCCcC
Q 039528 3 ELKNLFELNLKGNNVEG----HLPNCLKYLSHLKVFDISQNQLSGSLSSTI----TSL---------TSLEYLDLSYNNF 65 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~~---------~~l~~l~l~~~~~ 65 (136)
.+++|++|++++|.+.+ .++..+..+++|++|++++|.++...+..+ ..+ ++|++|++++|++
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 45667777777777765 245556667777777777776653322222 223 6777777777777
Q ss_pred c-CCCCh--HhhhcCccceEEEeccceeeec------c-CCCCCccccEEEcCCCCC-----CCCChhhhcCCCCcEEEc
Q 039528 66 E-GPCPL--SLLAHHSKLEVLVLSSTILVKT------E-NFLPTFQLKELGLANCSL-----NVVPTFLLHQYDLKYLDL 130 (136)
Q Consensus 66 ~-~~~~~--~~~~~~~~l~~l~l~~~~~~~~------~-~~~~~~~L~~l~l~~n~~-----~~~~~~~~~~~~L~~l~l 130 (136)
. +..+. ..+..+++|+++++++|.+.+. + .+..+++|+.|++++|.+ ..+|..+..+++|+.|++
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence 5 22221 2345667777777777766532 1 445556777777777777 345666677777777777
Q ss_pred CCCcCC
Q 039528 131 SHNNLV 136 (136)
Q Consensus 131 ~~n~l~ 136 (136)
++|.++
T Consensus 252 ~~n~i~ 257 (386)
T 2ca6_A 252 NDCLLS 257 (386)
T ss_dssp TTCCCC
T ss_pred CCCCCc
Confidence 777653
No 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=1.1e-16 Score=95.42 Aligned_cols=115 Identities=25% Similarity=0.213 Sum_probs=97.7
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
..+++|++|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++......+..+++|+
T Consensus 46 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~ 123 (168)
T 2ell_A 46 AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123 (168)
T ss_dssp GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence 4578899999999999965 77889999999999999998767888888999999999999998432224588899999
Q ss_pred EEEeccceeeeccC-----CCCCccccEEEcCCCCCCCCChh
Q 039528 82 VLVLSSTILVKTEN-----FLPTFQLKELGLANCSLNVVPTF 118 (136)
Q Consensus 82 ~l~l~~~~~~~~~~-----~~~~~~L~~l~l~~n~~~~~~~~ 118 (136)
++++++|.+...+. +..+++|+.|++++|.+.++|..
T Consensus 124 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 124 SLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp EEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred EEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 99999998876654 56788999999999999887753
No 104
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=6.3e-16 Score=94.28 Aligned_cols=106 Identities=26% Similarity=0.368 Sum_probs=94.3
Q ss_pred CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528 5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV 84 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~ 84 (136)
+++++|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|++++ ++...+..+++|+.++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~-i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE-eCHHHhCCCCCCCEEE
Confidence 46899999999998 677899999999999999999998777889999999999999999984 4445688999999999
Q ss_pred eccceeeecc--CCCCCccccEEEcCCCCC
Q 039528 85 LSSTILVKTE--NFLPTFQLKELGLANCSL 112 (136)
Q Consensus 85 l~~~~~~~~~--~~~~~~~L~~l~l~~n~~ 112 (136)
+++|.+...+ .+..+++|+.+++++|.+
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 9999887765 466788999999999988
No 105
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.66 E-value=6.2e-19 Score=107.96 Aligned_cols=126 Identities=21% Similarity=0.219 Sum_probs=71.4
Q ss_pred cccEEEcCCCcccccCcc------cccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCcc
Q 039528 6 NLFELNLKGNNVEGHLPN------CLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSK 79 (136)
Q Consensus 6 ~L~~l~l~~~~l~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~ 79 (136)
.++.+++..+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.+. .+|. .+..+++
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~-~~~~~~~ 94 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN-LDAVADT 94 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSS-HHHHHHH
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccc-hhhcCCc
Confidence 334444444444444433 55666666666666666653 34 5566666666666666665 3442 2444566
Q ss_pred ceEEEeccceeeeccCCCCCccccEEEcCCCCCCCCCh--hhhcCCCCcEEEcCCCcC
Q 039528 80 LEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPT--FLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 80 l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~l 135 (136)
|+.+++++|.+...+.+..+++|+.|++++|.++.++. .+..+++|+++++++|.+
T Consensus 95 L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 95 LEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp CSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCEEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 66666666665554444444566666666666655443 455666666666666643
No 106
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=2.4e-17 Score=107.90 Aligned_cols=130 Identities=26% Similarity=0.247 Sum_probs=59.2
Q ss_pred CCcccEEEcCCCcccccCcccccCCCcccEEEccCC-ccccc-cchhhhccCCCCEEEccCC-cCcCCCChHhhhcCc-c
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQN-QLSGS-LSSTITSLTSLEYLDLSYN-NFEGPCPLSLLAHHS-K 79 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~-~ 79 (136)
+++|++|++++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++......+..++ +
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 344444444444444444444444444444444444 33321 2333444455555555554 443211112244455 5
Q ss_pred ceEEEeccce--eeec--c-CCCCCccccEEEcCCCC-C-CCCChhhhcCCCCcEEEcCCC
Q 039528 80 LEVLVLSSTI--LVKT--E-NFLPTFQLKELGLANCS-L-NVVPTFLLHQYDLKYLDLSHN 133 (136)
Q Consensus 80 l~~l~l~~~~--~~~~--~-~~~~~~~L~~l~l~~n~-~-~~~~~~~~~~~~L~~l~l~~n 133 (136)
|+++++++|. +.+. + .+..+++|+.|++++|. + ...+..+..+++|++|++++|
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 5555555542 2111 1 12234456666666665 3 234445556666666666655
No 107
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=1.9e-15 Score=90.87 Aligned_cols=109 Identities=21% Similarity=0.279 Sum_probs=93.6
Q ss_pred CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL 83 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l 83 (136)
.++++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++ .+...+..+++|+++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQLKEL 105 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc-cCHHHhhCCcccCEE
Confidence 4679999999999997666778899999999999999987666778899999999999999984 454557889999999
Q ss_pred EeccceeeeccC--CCCCccccEEEcCCCCCC
Q 039528 84 VLSSTILVKTEN--FLPTFQLKELGLANCSLN 113 (136)
Q Consensus 84 ~l~~~~~~~~~~--~~~~~~L~~l~l~~n~~~ 113 (136)
++++|.+...+. +..+++|+++++++|.+.
T Consensus 106 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 106 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 999998876653 466789999999999983
No 108
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=1.4e-16 Score=104.29 Aligned_cols=132 Identities=23% Similarity=0.234 Sum_probs=80.9
Q ss_pred CCCcccEEEcCCCccccc-CcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCC-cCcCCCChHhhhcCccc
Q 039528 3 ELKNLFELNLKGNNVEGH-LPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN-NFEGPCPLSLLAHHSKL 80 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~~l 80 (136)
.+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++......+..+++|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 356677777777766644 5556666777777777777666556666666777777777776 44421112335566777
Q ss_pred eEEEeccc-eeeec--c-CCCCCc-cccEEEcCCCC--C--CCCChhhhcCCCCcEEEcCCCc
Q 039528 81 EVLVLSST-ILVKT--E-NFLPTF-QLKELGLANCS--L--NVVPTFLLHQYDLKYLDLSHNN 134 (136)
Q Consensus 81 ~~l~l~~~-~~~~~--~-~~~~~~-~L~~l~l~~n~--~--~~~~~~~~~~~~L~~l~l~~n~ 134 (136)
+++++++| .+.+. + .+..++ +|++|++++|. + ..++..+..+++|+.|++++|.
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 77777776 55432 1 234455 67777777763 3 3355566667777777777665
No 109
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=1.8e-15 Score=92.12 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=92.9
Q ss_pred CcccEEEcCCCcccccCcc-cccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528 5 KNLFELNLKGNNVEGHLPN-CLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL 83 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l 83 (136)
+++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+ ..+..+++|+++
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L 107 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN-KMFLGLHQLKTL 107 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECS-SSSTTCTTCCEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCH-HHhcCCCCCCEE
Confidence 3789999999999966554 48899999999999999998888999999999999999999985444 457889999999
Q ss_pred Eeccceeeec--cCCCCCccccEEEcCCCCC
Q 039528 84 VLSSTILVKT--ENFLPTFQLKELGLANCSL 112 (136)
Q Consensus 84 ~l~~~~~~~~--~~~~~~~~L~~l~l~~n~~ 112 (136)
++++|.+... ..+..+++|++|++++|.+
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 9999988655 3567788999999999998
No 110
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.64 E-value=8.3e-15 Score=99.82 Aligned_cols=57 Identities=28% Similarity=0.380 Sum_probs=25.2
Q ss_pred CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCc
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFE 66 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 66 (136)
+++|++|++++|.+++. + +..+++|++|++++|.+++. + +..+++|++|++++|.++
T Consensus 63 l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~ 119 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLT 119 (457)
T ss_dssp CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCS
T ss_pred cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCC
Confidence 34455555555554432 1 44444444444444444432 1 334444444444444443
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=2.7e-15 Score=104.57 Aligned_cols=119 Identities=23% Similarity=0.232 Sum_probs=93.6
Q ss_pred cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEe
Q 039528 6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL 85 (136)
Q Consensus 6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l 85 (136)
.|+.|++++|.+++ +|. +..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|+.|++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp--~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD--GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG--GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc--ccCCCCCCcEEEC
Confidence 47788999998885 565 888889999999998888 678888888999999999998884 55 3778888999999
Q ss_pred ccceeeec--c-CCCCCccccEEEcCCCCCCCCCh----hhhcCCCCcEEEc
Q 039528 86 SSTILVKT--E-NFLPTFQLKELGLANCSLNVVPT----FLLHQYDLKYLDL 130 (136)
Q Consensus 86 ~~~~~~~~--~-~~~~~~~L~~l~l~~n~~~~~~~----~~~~~~~L~~l~l 130 (136)
++|.+... + .+..+++|+.|++++|.++.+|. .+..+++|+.|++
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 88877655 2 45667788899999988855543 3455788888864
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.63 E-value=5.7e-15 Score=102.88 Aligned_cols=116 Identities=24% Similarity=0.238 Sum_probs=76.6
Q ss_pred cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEe
Q 039528 6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL 85 (136)
Q Consensus 6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l 85 (136)
+|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++
T Consensus 121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~--l~--~~L~~L~L 187 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE--LP--ESLEALDV 187 (571)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CC--TTCCEEEC
T ss_pred CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch--hh--CCCCEEEC
Confidence 34444444444443 333 34556666666666553 333 35667777777777763 553 32 77888888
Q ss_pred ccceeeeccCCCCCccc-------cEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528 86 SSTILVKTENFLPTFQL-------KELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 86 ~~~~~~~~~~~~~~~~L-------~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
++|.+...+.+.. +| +.|++++|.++.+|..+..+++|+.|++++|.++
T Consensus 188 s~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 188 STNLLESLPAVPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp CSSCCSSCCCCC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred cCCCCCchhhHHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence 8887776655322 67 9999999999989998888999999999999874
No 113
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.63 E-value=8.3e-15 Score=99.82 Aligned_cols=124 Identities=24% Similarity=0.262 Sum_probs=70.6
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccch-------------------hhhccCCCCEEEccC
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSS-------------------TITSLTSLEYLDLSY 62 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-------------------~~~~~~~l~~l~l~~ 62 (136)
..+++|++|++++|.+++ ++ +..+++|++|++++|.+++.... .+..+++|++|++++
T Consensus 103 ~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSF 179 (457)
T ss_dssp TTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCS
T ss_pred CCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCC
Confidence 456677777777777764 22 56666777777776666542100 123344445555555
Q ss_pred CcCcCCCChHhhhcCccceEEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528 63 NNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 63 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
|.+++ ++ +..+++|+.+++++|.+... .+..+++|+.|++++|.++.+| ++.+++|+.|++++|.+
T Consensus 180 n~l~~-l~---l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 180 NKITE-LD---VSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp SCCCC-CC---CTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCC
T ss_pred Cccce-ec---cccCCCCCEEECcCCcCCee-ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcC
Confidence 55442 22 33455555555555554443 2445556667777777765565 56666777777776665
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.63 E-value=7.6e-16 Score=102.03 Aligned_cols=60 Identities=20% Similarity=0.220 Sum_probs=28.2
Q ss_pred ccEEEcCCCcccccCc----ccccCCC-cccEEEccCCccccccchhhhcc-----CCCCEEEccCCcCc
Q 039528 7 LFELNLKGNNVEGHLP----NCLKYLS-HLKVFDISQNQLSGSLSSTITSL-----TSLEYLDLSYNNFE 66 (136)
Q Consensus 7 L~~l~l~~~~l~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~-----~~l~~l~l~~~~~~ 66 (136)
|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|++|++++|.+.
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 5555555555554333 3444444 45555555555443333333332 44555555554444
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.62 E-value=3.7e-16 Score=103.53 Aligned_cols=88 Identities=22% Similarity=0.311 Sum_probs=49.2
Q ss_pred CC-cccEEEcCCCcccccCcccccCC-----CcccEEEccCCccccccchhhh----cc-CCCCEEEccCCcCcCCCChH
Q 039528 4 LK-NLFELNLKGNNVEGHLPNCLKYL-----SHLKVFDISQNQLSGSLSSTIT----SL-TSLEYLDLSYNNFEGPCPLS 72 (136)
Q Consensus 4 l~-~L~~l~l~~~~l~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~----~~-~~l~~l~l~~~~~~~~~~~~ 72 (136)
++ +|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+. .. ++|++|++++|.+.+..+..
T Consensus 49 ~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 128 (362)
T 3goz_A 49 TPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE 128 (362)
T ss_dssp CCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH
Confidence 44 67777777777766555555543 6677777777766644444332 22 56666666666665332211
Q ss_pred h---hhc-CccceEEEeccceee
Q 039528 73 L---LAH-HSKLEVLVLSSTILV 91 (136)
Q Consensus 73 ~---~~~-~~~l~~l~l~~~~~~ 91 (136)
. +.. .++|+++++++|.+.
T Consensus 129 l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 129 FKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHHHhCCCceeEEEccCCcCC
Confidence 1 112 245666666666554
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=1.3e-16 Score=113.90 Aligned_cols=114 Identities=20% Similarity=0.269 Sum_probs=98.8
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
..++.|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|.. +..+++|+
T Consensus 221 ~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~ 296 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAE-LGSCFQLK 296 (727)
T ss_dssp -CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSS-GGGGTTCS
T ss_pred ccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChh-hcCCCCCC
Confidence 45788999999999998 67777779999999999999998 78899999999999999999998 77755 78899999
Q ss_pred EEEeccceeeecc-CCCCCccccEEEcCCCCCC-CCChhh
Q 039528 82 VLVLSSTILVKTE-NFLPTFQLKELGLANCSLN-VVPTFL 119 (136)
Q Consensus 82 ~l~l~~~~~~~~~-~~~~~~~L~~l~l~~n~~~-~~~~~~ 119 (136)
+|++++|.+...+ .+..+.+|++|++++|.++ .+|..+
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred EEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 9999999887765 4677889999999999994 455444
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1.2e-15 Score=89.30 Aligned_cols=105 Identities=24% Similarity=0.208 Sum_probs=88.1
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++......+..+++|+
T Consensus 39 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~ 116 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK 116 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCC
T ss_pred hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCC
Confidence 5688999999999999965 77889999999999999998768888888999999999999998422124578899999
Q ss_pred EEEeccceeeeccC-----CCCCccccEEEcC
Q 039528 82 VLVLSSTILVKTEN-----FLPTFQLKELGLA 108 (136)
Q Consensus 82 ~l~l~~~~~~~~~~-----~~~~~~L~~l~l~ 108 (136)
++++++|.+...+. +..+++|+.|+++
T Consensus 117 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 117 SLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99999998876654 4566788888875
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.59 E-value=1.8e-14 Score=100.43 Aligned_cols=111 Identities=28% Similarity=0.345 Sum_probs=47.4
Q ss_pred ccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEec
Q 039528 7 LFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLS 86 (136)
Q Consensus 7 L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~ 86 (136)
|+.|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|+.++++
T Consensus 82 L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls 148 (571)
T 3cvr_A 82 ITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE----LPALLEYINAD 148 (571)
T ss_dssp CSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC----CCTTCCEEECC
T ss_pred CCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC----cCccccEEeCC
Confidence 444444444444 233 223444455554444443 222 221 44444444444442 331 33444445544
Q ss_pred cceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528 87 STILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 87 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
+|.+...+. .+++|+.|++++|.++.+|. +. ++|+.|++++|.+
T Consensus 149 ~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 149 NNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLL 192 (571)
T ss_dssp SSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCC
T ss_pred CCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCC
Confidence 444433332 22344444444444444444 22 4444444444443
No 119
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.59 E-value=1.6e-14 Score=86.75 Aligned_cols=106 Identities=16% Similarity=0.170 Sum_probs=81.7
Q ss_pred ccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEec
Q 039528 7 LFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLS 86 (136)
Q Consensus 7 L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~ 86 (136)
-+.++++++.++ .+|..+. +.|++|++++|.+++..|..+..+++|++|++++|++++ ++...+..+++|++++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECC
Confidence 367888888887 5665543 788899999998887777888888999999999998874 555556778888888888
Q ss_pred cceeeecc--CCCCCccccEEEcCCCCCCCCC
Q 039528 87 STILVKTE--NFLPTFQLKELGLANCSLNVVP 116 (136)
Q Consensus 87 ~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~ 116 (136)
+|.+...+ .+..+++|+.|++++|.+...+
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 88776654 2566778888888888885433
No 120
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.59 E-value=1.3e-15 Score=101.53 Aligned_cols=58 Identities=19% Similarity=0.234 Sum_probs=28.0
Q ss_pred ccceEEEeccceeeecc------CCCCCccccEEEcCCCCCC------CCChhhhcCCCCcEEEcCCCcC
Q 039528 78 SKLEVLVLSSTILVKTE------NFLPTFQLKELGLANCSLN------VVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 78 ~~l~~l~l~~~~~~~~~------~~~~~~~L~~l~l~~n~~~------~~~~~~~~~~~L~~l~l~~n~l 135 (136)
++|+++++++|.+.+.. .+..+++|++|++++|.++ ..+..+..+++|+.|++++|.+
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC
Confidence 45555555555443211 1123335556666555553 1222455556666666666554
No 121
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.58 E-value=3.9e-14 Score=99.64 Aligned_cols=77 Identities=25% Similarity=0.239 Sum_probs=61.1
Q ss_pred CCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCC
Q 039528 53 TSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSH 132 (136)
Q Consensus 53 ~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~ 132 (136)
++|+.|++++|.+++ +| ..+++|+.+++++|.+...+. .+++|+.|++++|.++.+|..+..+++|+.|++++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp----~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP----VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp TTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCS
T ss_pred CCCCEEEccCCccCc-CC----CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecC
Confidence 567777777777763 44 345778888888887776655 45689999999999999999999999999999999
Q ss_pred CcCC
Q 039528 133 NNLV 136 (136)
Q Consensus 133 n~l~ 136 (136)
|.++
T Consensus 294 N~l~ 297 (622)
T 3g06_A 294 NPLS 297 (622)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9874
No 122
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.58 E-value=1.6e-17 Score=101.68 Aligned_cols=125 Identities=23% Similarity=0.272 Sum_probs=104.0
Q ss_pred CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528 3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV 82 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~ 82 (136)
.+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ ++ .+..+++|++
T Consensus 46 ~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~--~~~~l~~L~~ 119 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS--GIEKLVNLRV 119 (198)
T ss_dssp HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH--HHHHHHHSSE
T ss_pred cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC--ccccCCCCCE
Confidence 46789999999999996 66 8889999999999999998 567777788999999999999984 44 3778899999
Q ss_pred EEeccceeeecc---CCCCCccccEEEcCCCCCCC-CCh----------hhhcCCCCcEEEcCCCcC
Q 039528 83 LVLSSTILVKTE---NFLPTFQLKELGLANCSLNV-VPT----------FLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 83 l~l~~~~~~~~~---~~~~~~~L~~l~l~~n~~~~-~~~----------~~~~~~~L~~l~l~~n~l 135 (136)
+++++|.+...+ .+..+++|++|++++|.+.. .|. .+..+++|+.|| ++.+
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 999999887644 35778899999999999833 332 378899999987 5543
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=6.7e-15 Score=88.42 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=91.0
Q ss_pred ccccCCCcccEEEccCCccccccchhhhcc-CCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccC--CCCC
Q 039528 23 NCLKYLSHLKVFDISQNQLSGSLSSTITSL-TSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTEN--FLPT 99 (136)
Q Consensus 23 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~ 99 (136)
..+.++.+|++|++++|.++. ++. +..+ ++|++|++++|.+++ ++ .+..+++|+.+++++|.+...+. +..+
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~-~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRK-LD--GFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCE-EC--CCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred HhcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCc-cc--ccccCCCCCEEECCCCcccccCcchhhcC
Confidence 346778999999999999984 444 4444 499999999999984 32 47789999999999998877653 3667
Q ss_pred ccccEEEcCCCCCCCCCh--hhhcCCCCcEEEcCCCcCC
Q 039528 100 FQLKELGLANCSLNVVPT--FLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 100 ~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~l~ 136 (136)
++|+.|++++|.++.+|. .+..+++|+.|++++|.++
T Consensus 88 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 88 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 799999999999998887 7899999999999999863
No 124
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.58 E-value=2e-14 Score=85.96 Aligned_cols=104 Identities=20% Similarity=0.262 Sum_probs=83.7
Q ss_pred cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEe
Q 039528 6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL 85 (136)
Q Consensus 6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l 85 (136)
..+.++++++.++ .+|..+ .+.+++|++++|.+++..+..+..+++|++|++++|+++ .++...+..+++|+++++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEEC
Confidence 3578899999988 466544 378899999999998777888889999999999999998 455555778889999999
Q ss_pred ccceeeecc--CCCCCccccEEEcCCCCCC
Q 039528 86 SSTILVKTE--NFLPTFQLKELGLANCSLN 113 (136)
Q Consensus 86 ~~~~~~~~~--~~~~~~~L~~l~l~~n~~~ 113 (136)
++|.+...+ .+..+.+|+.|++++|.+.
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 998876664 3567778899999988883
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=1.9e-14 Score=100.37 Aligned_cols=103 Identities=29% Similarity=0.309 Sum_probs=92.9
Q ss_pred cccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccCCCCCccccEEEcCC
Q 039528 30 HLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLAN 109 (136)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~ 109 (136)
.|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|. .+..+++|+.|++++|.+...+.+..+++|+.|++++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDNALENVDGVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccch-hhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCC
Confidence 58899999999985 565 899999999999999998 7785 4889999999999999988887778888999999999
Q ss_pred CCCCCC--ChhhhcCCCCcEEEcCCCcCC
Q 039528 110 CSLNVV--PTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 110 n~~~~~--~~~~~~~~~L~~l~l~~n~l~ 136 (136)
|.++.+ |..++.+++|+.|++++|.++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 999776 889999999999999999874
No 126
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.58 E-value=3.1e-14 Score=96.93 Aligned_cols=119 Identities=27% Similarity=0.324 Sum_probs=77.7
Q ss_pred CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528 5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV 84 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~ 84 (136)
++|++|++++|.+++ +| .+..+++|++|++++|.+++ +|.. ..+|++|++++|.+++ +| + +..+++|++++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~-~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-E-LQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-C-CTTCTTCCEEE
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-c-ccCCCCCCEEE
Confidence 467777777777774 55 46777777777777777763 3332 2467777777777764 44 2 66677777777
Q ss_pred eccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528 85 LSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 85 l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
+++|.+...+.. ..+|++|++++|.++.+|. ++.+++|++|++++|.+
T Consensus 202 l~~N~l~~l~~~--~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 202 ADNNSLKKLPDL--PLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLL 249 (454)
T ss_dssp CCSSCCSSCCCC--CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCC
T ss_pred CCCCcCCcCCCC--cCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcC
Confidence 777766554332 2367777777777766663 66677777777777655
No 127
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=1.1e-14 Score=96.03 Aligned_cols=131 Identities=19% Similarity=0.200 Sum_probs=71.7
Q ss_pred cccEEEcCCCcccccCcccccCCCcccEEEccCCcc--------------------------ccccchhhhccCCCCEEE
Q 039528 6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQL--------------------------SGSLSSTITSLTSLEYLD 59 (136)
Q Consensus 6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~--------------------------~~~~~~~~~~~~~l~~l~ 59 (136)
++++|++++|.++...+..|.++++|++|++++|.+ +...++.|..+++|++++
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 345555555555533334455555555555555543 333344455566777777
Q ss_pred ccCCcCcCCCCh------------------------HhhhcC-ccceEEEeccceeeecc-CCCCCccccEEEcCC-CCC
Q 039528 60 LSYNNFEGPCPL------------------------SLLAHH-SKLEVLVLSSTILVKTE-NFLPTFQLKELGLAN-CSL 112 (136)
Q Consensus 60 l~~~~~~~~~~~------------------------~~~~~~-~~l~~l~l~~~~~~~~~-~~~~~~~L~~l~l~~-n~~ 112 (136)
+++|.+....+. ..+..+ ..++.+++++|.+...+ ......+++.+++.+ |.+
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l 190 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNL 190 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTC
T ss_pred ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcc
Confidence 776666422111 111111 13455555555554443 223344667777754 555
Q ss_pred CCCCh-hhhcCCCCcEEEcCCCcCC
Q 039528 113 NVVPT-FLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 113 ~~~~~-~~~~~~~L~~l~l~~n~l~ 136 (136)
+.+|. ++..+++|+.|++++|.++
T Consensus 191 ~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 191 EELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp CCCCTTTTTTEECCSEEECTTSCCC
T ss_pred cCCCHHHhccCcccchhhcCCCCcC
Confidence 77775 5678889999999998874
No 128
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.57 E-value=2.2e-15 Score=102.31 Aligned_cols=133 Identities=26% Similarity=0.286 Sum_probs=91.0
Q ss_pred CCcccEEEcCCCccccc----CcccccCCCcccEEEccCCccccccchhhhc-----cCCCCEEEccCCcCcCCCC---h
Q 039528 4 LKNLFELNLKGNNVEGH----LPNCLKYLSHLKVFDISQNQLSGSLSSTITS-----LTSLEYLDLSYNNFEGPCP---L 71 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~~l~~l~l~~~~~~~~~~---~ 71 (136)
+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+++... .
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence 56667777777766643 3445556777777777777665433333322 2577778887777764311 1
Q ss_pred HhhhcCccceEEEeccceeeecc--C----C-CCCccccEEEcCCCCCC-----CCChhhhcCCCCcEEEcCCCcCC
Q 039528 72 SLLAHHSKLEVLVLSSTILVKTE--N----F-LPTFQLKELGLANCSLN-----VVPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 72 ~~~~~~~~l~~l~l~~~~~~~~~--~----~-~~~~~L~~l~l~~n~~~-----~~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
..+..+++|+++++++|.+.+.. . + ...++|+.|++++|.++ .++..+..+++|++|++++|.++
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 23556789999999998776543 1 1 12568999999999996 67788888999999999999874
No 129
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.56 E-value=4e-14 Score=84.63 Aligned_cols=103 Identities=23% Similarity=0.197 Sum_probs=86.7
Q ss_pred cccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeecc--CCCCCccccEEEc
Q 039528 30 HLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTE--NFLPTFQLKELGL 107 (136)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~l~l 107 (136)
..+.++++++.++ .+|..+ ...+++|++++|.+++..+ ..+..+++|+++++++|.+...+ .+..+++|++|++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEP-GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccCh-hhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 4678999999998 466554 3789999999999985444 55889999999999999987765 3567889999999
Q ss_pred CCCCCCCCCh-hhhcCCCCcEEEcCCCcCC
Q 039528 108 ANCSLNVVPT-FLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 108 ~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~ 136 (136)
++|.++.++. .+..+++|+.|++++|+++
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 9999987776 6889999999999999864
No 130
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.56 E-value=4.8e-14 Score=84.63 Aligned_cols=102 Identities=23% Similarity=0.243 Sum_probs=86.3
Q ss_pred ccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccC--CCCCccccEEEcC
Q 039528 31 LKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTEN--FLPTFQLKELGLA 108 (136)
Q Consensus 31 L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~l~l~ 108 (136)
.+.++++++.++ .+|..+. ..+++|++++|.+.+..+ ..+..+++|+.|++++|.+...+. +..+++|+.|+++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEP-GVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCH-HHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 478899999987 5666553 889999999999985444 558899999999999999877753 5678899999999
Q ss_pred CCCCCCCCh-hhhcCCCCcEEEcCCCcCC
Q 039528 109 NCSLNVVPT-FLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 109 ~n~~~~~~~-~~~~~~~L~~l~l~~n~l~ 136 (136)
+|.++.+|. .+..+++|+.|++++|++.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 999988886 5889999999999999874
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.54 E-value=1.3e-13 Score=93.89 Aligned_cols=104 Identities=21% Similarity=0.232 Sum_probs=57.0
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~ 81 (136)
.++++|+++++++|.+++ +|.. .++|++|++++|.+++ .| .+..+++|+++++++|.+.+ +|. ..++|+
T Consensus 150 ~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~ 218 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD----LPLSLE 218 (454)
T ss_dssp TTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC----CCTTCC
T ss_pred CCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC----CcCccc
Confidence 456777888888877774 4432 2467777777776664 33 45666666666666666653 221 113455
Q ss_pred EEEeccceeeeccCCCCCccccEEEcCCCCCCCCC
Q 039528 82 VLVLSSTILVKTENFLPTFQLKELGLANCSLNVVP 116 (136)
Q Consensus 82 ~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 116 (136)
++++++|.+...+.+..+++|++|++++|.++.+|
T Consensus 219 ~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~ 253 (454)
T 1jl5_A 219 SIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP 253 (454)
T ss_dssp EEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC
T ss_pred EEECcCCcCCcccccCCCCCCCEEECCCCcCCccc
Confidence 55555554444333444444455555444443333
No 132
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.50 E-value=3.9e-14 Score=96.19 Aligned_cols=129 Identities=22% Similarity=0.263 Sum_probs=80.4
Q ss_pred cccEEEcCCCcccccC----cccccCCCcccEEEccCCccccccchhhh-----ccCCCCEEEccCCcCcCC----CChH
Q 039528 6 NLFELNLKGNNVEGHL----PNCLKYLSHLKVFDISQNQLSGSLSSTIT-----SLTSLEYLDLSYNNFEGP----CPLS 72 (136)
Q Consensus 6 ~L~~l~l~~~~l~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~l~~l~l~~~~~~~~----~~~~ 72 (136)
+|++|++++|.+++.. +..+..+++|++|++++|.+....+..+. ..++|++|++++|.++.. ++ .
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~-~ 221 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC-G 221 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH-H
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH-H
Confidence 4555555555555422 33344556666666666665533333222 245677777777776532 12 2
Q ss_pred hhhcCccceEEEeccceeeecc-------CCCCCccccEEEcCCCCCCC-----CChhhhcCCCCcEEEcCCCcC
Q 039528 73 LLAHHSKLEVLVLSSTILVKTE-------NFLPTFQLKELGLANCSLNV-----VPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 73 ~~~~~~~l~~l~l~~~~~~~~~-------~~~~~~~L~~l~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n~l 135 (136)
.+..+++|+++++++|.+.+.. .....++|++|++++|.++. ++..+..+++|++|++++|.+
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 3556788888888887765432 11245688888888888865 666777788888888888875
No 133
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.47 E-value=2e-14 Score=95.59 Aligned_cols=132 Identities=20% Similarity=0.164 Sum_probs=93.5
Q ss_pred CcccEEEcCCCcccccCcccc-cCCCcccEEEccCCccccccchhh-----hccCCCCEEEccCCcCcCCCC---hHhhh
Q 039528 5 KNLFELNLKGNNVEGHLPNCL-KYLSHLKVFDISQNQLSGSLSSTI-----TSLTSLEYLDLSYNNFEGPCP---LSLLA 75 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~l~~l~l~~~~~~~~~~---~~~~~ 75 (136)
++|++|++++|.+++.....+ ..+++|+.|++++|.++......+ ...++|++|++++|.++.... ...+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 578888888888865444333 345678888888888864433333 235789999999998863211 12245
Q ss_pred cCccceEEEeccceeeecc------CCCCCccccEEEcCCCCCCC-----CChhhhcCCCCcEEEcCCCcCC
Q 039528 76 HHSKLEVLVLSSTILVKTE------NFLPTFQLKELGLANCSLNV-----VPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 76 ~~~~l~~l~l~~~~~~~~~------~~~~~~~L~~l~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
.+++|+++++++|.+.+.+ .+...++|++|++++|.+++ +..++...+.|++|++++|.++
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 6788999999999876643 33455689999999999954 3445667789999999999874
No 134
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.45 E-value=1.2e-12 Score=92.21 Aligned_cols=97 Identities=25% Similarity=0.300 Sum_probs=50.8
Q ss_pred cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEe
Q 039528 6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL 85 (136)
Q Consensus 6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l 85 (136)
+|+.|++++|.++ .+|. .+++|++|++++|.++. +|. .+++|++|++++|.++ .++. .+++|+.+++
T Consensus 62 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L~L 128 (622)
T 3g06_A 62 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT-HLPA----LPSGLCKLWI 128 (622)
T ss_dssp TCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC-CCCC----CCTTCCEEEC
T ss_pred CCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC-CCCC----CCCCcCEEEC
Confidence 4555555555555 2333 34555566665555542 232 3455666666666555 2332 3455666666
Q ss_pred ccceeeeccCCCCCccccEEEcCCCCCCCCCh
Q 039528 86 SSTILVKTENFLPTFQLKELGLANCSLNVVPT 117 (136)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 117 (136)
++|.+...+.. .++|++|++++|.++.+|.
T Consensus 129 ~~N~l~~lp~~--l~~L~~L~Ls~N~l~~l~~ 158 (622)
T 3g06_A 129 FGNQLTSLPVL--PPGLQELSVSDNQLASLPA 158 (622)
T ss_dssp CSSCCSCCCCC--CTTCCEEECCSSCCSCCCC
T ss_pred CCCCCCcCCCC--CCCCCEEECcCCcCCCcCC
Confidence 66555444332 2466666776666654443
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.44 E-value=6.5e-13 Score=87.63 Aligned_cols=106 Identities=15% Similarity=0.170 Sum_probs=75.6
Q ss_pred cEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE-EEec
Q 039528 8 FELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV-LVLS 86 (136)
Q Consensus 8 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~-l~l~ 86 (136)
+.++.+++.++ .+|..+ .+++++|++++|.++.+.++.|..+++|++|++++|.+.+.++..++..++++.+ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56778888888 566654 3579999999999986656678999999999999999865666555667766654 4444
Q ss_pred cceeeecc--CCCCCccccEEEcCCCCCCCCC
Q 039528 87 STILVKTE--NFLPTFQLKELGLANCSLNVVP 116 (136)
Q Consensus 87 ~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~ 116 (136)
.|.+...+ .+..+++|+.|++++|.+..++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~ 120 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLP 120 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCC
T ss_pred CCcccccCchhhhhccccccccccccccccCC
Confidence 45554432 4556667777777777664443
No 136
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.42 E-value=1.7e-12 Score=85.37 Aligned_cols=103 Identities=19% Similarity=0.186 Sum_probs=83.5
Q ss_pred cEEEcCCC-cccccCcccccCCCcccEEEccC-CccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEe
Q 039528 8 FELNLKGN-NVEGHLPNCLKYLSHLKVFDISQ-NQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL 85 (136)
Q Consensus 8 ~~l~l~~~-~l~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l 85 (136)
..++.+++ .++ .+|. +..+.+|++|++++ |.+++..+..|..+++|+.|++++|++++..+ ..+..+++|+.|++
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH-HHhcCCcCCCEEeC
Confidence 35688887 888 5777 89999999999996 99987777889999999999999999985444 55888999999999
Q ss_pred ccceeeeccC-CCCCccccEEEcCCCCCC
Q 039528 86 SSTILVKTEN-FLPTFQLKELGLANCSLN 113 (136)
Q Consensus 86 ~~~~~~~~~~-~~~~~~L~~l~l~~n~~~ 113 (136)
++|.+...+. ......|+.|++.+|.+.
T Consensus 88 ~~N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CCCccceeCHHHcccCCceEEEeeCCCcc
Confidence 9998876652 222234999999999984
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.40 E-value=1.2e-12 Score=86.11 Aligned_cols=88 Identities=25% Similarity=0.243 Sum_probs=76.9
Q ss_pred CCCCcccEEEcCC-CcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccc
Q 039528 2 CELKNLFELNLKG-NNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKL 80 (136)
Q Consensus 2 ~~l~~L~~l~l~~-~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l 80 (136)
..+++|+.|++++ |.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|+++ .+|...+..++ |
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~-L 105 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLS-L 105 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCC-C
T ss_pred CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHcccCC-c
Confidence 4567899999996 9999877789999999999999999999888889999999999999999998 45655565555 9
Q ss_pred eEEEeccceee
Q 039528 81 EVLVLSSTILV 91 (136)
Q Consensus 81 ~~l~l~~~~~~ 91 (136)
+.|++.+|.+.
T Consensus 106 ~~l~l~~N~~~ 116 (347)
T 2ifg_A 106 QELVLSGNPLH 116 (347)
T ss_dssp CEEECCSSCCC
T ss_pred eEEEeeCCCcc
Confidence 99999998764
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.39 E-value=2e-12 Score=84.67 Aligned_cols=81 Identities=21% Similarity=0.237 Sum_probs=52.6
Q ss_pred cCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeec--cCCCCCcccc-EEEcCCCCCCCCC-hhhhcCCCCcE
Q 039528 52 LTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKT--ENFLPTFQLK-ELGLANCSLNVVP-TFLLHQYDLKY 127 (136)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~~~~~~~L~-~l~l~~n~~~~~~-~~~~~~~~L~~ 127 (136)
+++|+.+++++|.++ .++..+|..+.+|+.+++..| +..+ .++..+.+|+ .+.+.. .++.++ .+|..|++|+.
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 566777777777665 556566777777777777776 3223 2556666677 777766 565554 46677777777
Q ss_pred EEcCCCcC
Q 039528 128 LDLSHNNL 135 (136)
Q Consensus 128 l~l~~n~l 135 (136)
+++++|.+
T Consensus 302 l~l~~n~i 309 (329)
T 3sb4_A 302 VLATGDKI 309 (329)
T ss_dssp EEECSSCC
T ss_pred EEeCCCcc
Confidence 77766554
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.38 E-value=8.8e-12 Score=81.57 Aligned_cols=101 Identities=14% Similarity=0.160 Sum_probs=84.5
Q ss_pred CCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce-EEEecccee-eeccCCCCCccccEE
Q 039528 28 LSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE-VLVLSSTIL-VKTENFLPTFQLKEL 105 (136)
Q Consensus 28 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~-~l~l~~~~~-~~~~~~~~~~~L~~l 105 (136)
+++|+.+++++|.++.+....|..+.+|+.+++.+| +. .++..+|..+++|+ .+++..+.. ....++..+.+|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEE
Confidence 678899999988888677778999999999999987 55 57777899999999 999988432 223478888899999
Q ss_pred EcCCCCCCCCCh-hhhcCCCCcEEEc
Q 039528 106 GLANCSLNVVPT-FLLHQYDLKYLDL 130 (136)
Q Consensus 106 ~l~~n~~~~~~~-~~~~~~~L~~l~l 130 (136)
++..|.+..++. ++..+++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 999999988775 8899999998864
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=1.4e-13 Score=91.57 Aligned_cols=132 Identities=19% Similarity=0.177 Sum_probs=97.8
Q ss_pred CcccEEEcCCCcccccCcccccC-----CCcccEEEccCCccccccchhh-hccCCCCEEEccCCcCcCCCChHh---h-
Q 039528 5 KNLFELNLKGNNVEGHLPNCLKY-----LSHLKVFDISQNQLSGSLSSTI-TSLTSLEYLDLSYNNFEGPCPLSL---L- 74 (136)
Q Consensus 5 ~~L~~l~l~~~~l~~~~~~~~~~-----l~~L~~L~l~~~~~~~~~~~~~-~~~~~l~~l~l~~~~~~~~~~~~~---~- 74 (136)
+.++.+++++|.++......+.. .+.|++|++++|.++......+ ..+.+++.|++++|.+........ +
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 56899999999998654444433 3799999999999875433333 346789999999999963322221 1
Q ss_pred hcCccceEEEeccceeeecc------CCCCCccccEEEcCCCCCCC-----CChhhhcCCCCcEEEcCCCcCC
Q 039528 75 AHHSKLEVLVLSSTILVKTE------NFLPTFQLKELGLANCSLNV-----VPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 75 ~~~~~l~~l~l~~~~~~~~~------~~~~~~~L~~l~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
...+.|+++++++|.+.+.+ .+...++|++|++++|.+++ +...+...++|+.|++++|.++
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 24578999999999886643 22456789999999999943 3456778889999999999874
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.32 E-value=4.5e-13 Score=93.51 Aligned_cols=133 Identities=10% Similarity=0.091 Sum_probs=70.2
Q ss_pred CCcccEEEcCCCcccccCcccccC-CCcccEEEcc----CCccccc-----cchhhhccCCCCEEEccCCc--CcCCCCh
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLKY-LSHLKVFDIS----QNQLSGS-----LSSTITSLTSLEYLDLSYNN--FEGPCPL 71 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~~-l~~L~~L~l~----~~~~~~~-----~~~~~~~~~~l~~l~l~~~~--~~~~~~~ 71 (136)
+++|+.|+++.+.+++..+..+.. +++|+.|+++ .+.+++. .+..+..+++|++|+++.+. +++....
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 344555555444444433333332 5555555554 2333321 12223445566666664322 3222222
Q ss_pred HhhhcCccceEEEeccceeeecc---CCCCCccccEEEcCCCCCCC--CChhhhcCCCCcEEEcCCCcCC
Q 039528 72 SLLAHHSKLEVLVLSSTILVKTE---NFLPTFQLKELGLANCSLNV--VPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 72 ~~~~~~~~l~~l~l~~~~~~~~~---~~~~~~~L~~l~l~~n~~~~--~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
.....+++|+.+++++|.+.+.. ....+++|+.|++++|.++. ++..+..+++|+.|++++|.++
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 22334666777777776654422 12455678888888888732 4445567788888888887764
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.26 E-value=2.3e-11 Score=84.98 Aligned_cols=131 Identities=16% Similarity=0.148 Sum_probs=79.4
Q ss_pred CCCcccEEEcCCCccccc----CcccccCCCcccEEEccCCcccc----ccchhhhccCCCCEEEccCCcCcCCCChHhh
Q 039528 3 ELKNLFELNLKGNNVEGH----LPNCLKYLSHLKVFDISQNQLSG----SLSSTITSLTSLEYLDLSYNNFEGPCPLSLL 74 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~~~----~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 74 (136)
.+++|++|++++|.+++. ++..+..+++|++|++++|.+++ .++..+..+++|+.|+++++.+.+ ++ ..+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~-~~~ 239 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LV-GFF 239 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GH-HHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HH-HHH
Confidence 357788888888877654 22344567788888888777652 233445567888888888877763 44 446
Q ss_pred hcCccceEEEeccceee-e-c---cCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528 75 AHHSKLEVLVLSSTILV-K-T---ENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 75 ~~~~~l~~l~l~~~~~~-~-~---~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l 135 (136)
..+++|++++++..... . . .....+.+|+.+++.++....+|..+..+++|++|++++|.+
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l 305 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL 305 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcC
Confidence 67778888887642111 0 0 122334455666655544455555555566666666665543
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.09 E-value=5.1e-11 Score=72.08 Aligned_cols=114 Identities=11% Similarity=0.146 Sum_probs=80.1
Q ss_pred cccccCCCcccEEEccCC-ccccc----cchhhhccCCCCEEEccCCcCcCCCC---hHhhhcCccceEEEeccceeeec
Q 039528 22 PNCLKYLSHLKVFDISQN-QLSGS----LSSTITSLTSLEYLDLSYNNFEGPCP---LSLLAHHSKLEVLVLSSTILVKT 93 (136)
Q Consensus 22 ~~~~~~l~~L~~L~l~~~-~~~~~----~~~~~~~~~~l~~l~l~~~~~~~~~~---~~~~~~~~~l~~l~l~~~~~~~~ 93 (136)
...+...+.|++|++++| .+... +...+...++|++|++++|.+..... ...+...+.|++|++++|.+.+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345566788888888888 77532 33445556788888888888853211 12344567888899988887665
Q ss_pred c------CCCCCccccEEEc--CCCCCCC-----CChhhhcCCCCcEEEcCCCcC
Q 039528 94 E------NFLPTFQLKELGL--ANCSLNV-----VPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 94 ~------~~~~~~~L~~l~l--~~n~~~~-----~~~~~~~~~~L~~l~l~~n~l 135 (136)
+ +....++|++|++ ++|.++. +...+...+.|++|++++|.+
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3 3455568999999 8888853 445677778899999998875
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.02 E-value=2.8e-11 Score=84.45 Aligned_cols=131 Identities=11% Similarity=0.063 Sum_probs=67.8
Q ss_pred CCcccEEEcCCCcccccCccccc-CCCcccEEEcc--C----Cccccc-----cchhhhccCCCCEEEccCCcCcCCCCh
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLK-YLSHLKVFDIS--Q----NQLSGS-----LSSTITSLTSLEYLDLSYNNFEGPCPL 71 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~-~l~~L~~L~l~--~----~~~~~~-----~~~~~~~~~~l~~l~l~~~~~~~~~~~ 71 (136)
+++|+.|.+..+.+++.....+. .+++|+.|+++ + +.++.. .+..+..+++|+.|++++ .+++....
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 34455555544555443333332 35666666665 2 233311 111234556666666654 33322222
Q ss_pred HhhhcCccceEEEeccceeeecc--CC-CCCccccEEEcCCCCCCC--CChhhhcCCCCcEEEcCCCcC
Q 039528 72 SLLAHHSKLEVLVLSSTILVKTE--NF-LPTFQLKELGLANCSLNV--VPTFLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 72 ~~~~~~~~l~~l~l~~~~~~~~~--~~-~~~~~L~~l~l~~n~~~~--~~~~~~~~~~L~~l~l~~n~l 135 (136)
.....+++|+.+++++|.+.+.. .+ ..+++|+.|++++|.++. +...+..+++|+.|++++|.+
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 22223667777777776654332 11 335577888888877733 222445577788888877765
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.99 E-value=5.1e-10 Score=78.18 Aligned_cols=130 Identities=15% Similarity=0.134 Sum_probs=75.8
Q ss_pred CCcccEEEcCCCccccc---C------------cccccCCCcccEEEccCCccccccchhhh-ccCCCCEEEccCC-cCc
Q 039528 4 LKNLFELNLKGNNVEGH---L------------PNCLKYLSHLKVFDISQNQLSGSLSSTIT-SLTSLEYLDLSYN-NFE 66 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~---~------------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~l~l~~~-~~~ 66 (136)
+++|+.+++.++..... . +.....+++|++|+++++.+++..+..+. .+++|++|++.++ .+.
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 46677777776542111 1 11123567788888887777655555554 5777888888777 333
Q ss_pred CCCChHhhhcCccceEEEeccceeeecc------CCCCCccccEEEcCCCC--CC--CCChhhhcCCCCcEEEcCCC
Q 039528 67 GPCPLSLLAHHSKLEVLVLSSTILVKTE------NFLPTFQLKELGLANCS--LN--VVPTFLLHQYDLKYLDLSHN 133 (136)
Q Consensus 67 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~------~~~~~~~L~~l~l~~n~--~~--~~~~~~~~~~~L~~l~l~~n 133 (136)
..........+++|++|++++|.+.+.. ....+++|+.|++++|. ++ .++..+..+++|++|++++|
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 2112233446777888888777654422 11245577777777775 21 12223455677777777765
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.95 E-value=1.5e-09 Score=72.03 Aligned_cols=130 Identities=20% Similarity=0.192 Sum_probs=72.2
Q ss_pred CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhh--ccCCCCEEEccC--CcCcCCCCh----Hhh-
Q 039528 4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTIT--SLTSLEYLDLSY--NNFEGPCPL----SLL- 74 (136)
Q Consensus 4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~l~~l~l~~--~~~~~~~~~----~~~- 74 (136)
+|+|+.|.++++.-. .++. + .+++|+.|++..+.+.......+. .+++|++|+++. +...+.... ..+
T Consensus 171 ~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247 (362)
T ss_dssp CTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred CCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence 455666666554211 1222 2 256666666666655433223333 577888887742 221111100 111
Q ss_pred -hcCccceEEEeccceeeecc-----CCCCCccccEEEcCCCCCCC-----CChhhhcCCCCcEEEcCCCcCC
Q 039528 75 -AHHSKLEVLVLSSTILVKTE-----NFLPTFQLKELGLANCSLNV-----VPTFLLHQYDLKYLDLSHNNLV 136 (136)
Q Consensus 75 -~~~~~l~~l~l~~~~~~~~~-----~~~~~~~L~~l~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n~l~ 136 (136)
..+++|++|++.+|.+.+.. ....++.|++|+++.|.+++ ++..+..+++|+.|++++|.++
T Consensus 248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 24678888888776654321 11345678888888888743 3334456788888888888764
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.92 E-value=3.8e-10 Score=68.25 Aligned_cols=112 Identities=20% Similarity=0.175 Sum_probs=84.2
Q ss_pred CCCCcccEEEcCCC-ccccc----CcccccCCCcccEEEccCCccccc----cchhhhccCCCCEEEccCCcCcCCCC--
Q 039528 2 CELKNLFELNLKGN-NVEGH----LPNCLKYLSHLKVFDISQNQLSGS----LSSTITSLTSLEYLDLSYNNFEGPCP-- 70 (136)
Q Consensus 2 ~~l~~L~~l~l~~~-~l~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~l~~l~l~~~~~~~~~~-- 70 (136)
...+.|++|++++| .+.+. +...+...++|++|++++|.+... +...+...+.|++|++++|.+.....
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 35678999999999 88754 334556688999999999998743 33445567899999999999963221
Q ss_pred -hHhhhcCccceEEEe--ccceeeecc------CCCCCccccEEEcCCCCCC
Q 039528 71 -LSLLAHHSKLEVLVL--SSTILVKTE------NFLPTFQLKELGLANCSLN 113 (136)
Q Consensus 71 -~~~~~~~~~l~~l~l--~~~~~~~~~------~~~~~~~L~~l~l~~n~~~ 113 (136)
...+...+.|+++++ ++|.+.+.. .+...++|++|++++|.++
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 123556778999999 788887654 2344568999999999884
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.88 E-value=3.8e-08 Score=66.20 Aligned_cols=59 Identities=10% Similarity=0.073 Sum_probs=29.7
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccC
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSY 62 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~ 62 (136)
.++++|+.+++..|.++......|. +..|+.+.+..+ ++.+....|..+.+|+.+++..
T Consensus 177 ~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 177 YYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred hCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 4456666666666555533333333 345555555433 3333344555555566555543
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.86 E-value=7.1e-09 Score=66.00 Aligned_cols=65 Identities=28% Similarity=0.351 Sum_probs=37.3
Q ss_pred cCCCcccEEEccCCcccc--ccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceee
Q 039528 26 KYLSHLKVFDISQNQLSG--SLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILV 91 (136)
Q Consensus 26 ~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 91 (136)
.++++|+.|++++|.+++ .++..+..+++|+.|++++|++.+.-....+..+ +|++|++.+|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence 446667777777776664 2334555667777777777776532111122222 6677777776654
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.84 E-value=4.8e-08 Score=65.69 Aligned_cols=79 Identities=16% Similarity=0.224 Sum_probs=50.8
Q ss_pred cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEe
Q 039528 6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL 85 (136)
Q Consensus 6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l 85 (136)
+|+.+.+.. .+......+|.+|.+|+.+++.+|.++......|. ..+|+.+.+..+ +. .++..+|..+++|+.+.+
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEec
Confidence 355555554 44444556777778888888877777644444444 577777777643 43 455566777778888877
Q ss_pred ccc
Q 039528 86 SST 88 (136)
Q Consensus 86 ~~~ 88 (136)
..+
T Consensus 234 ~~~ 236 (401)
T 4fdw_A 234 PEN 236 (401)
T ss_dssp CTT
T ss_pred CCC
Confidence 664
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.78 E-value=2.7e-09 Score=67.90 Aligned_cols=80 Identities=25% Similarity=0.215 Sum_probs=62.8
Q ss_pred hccCCCCEEEccCCcCcC--CCChHhhhcCccceEEEeccceeeeccCCCCCc--cccEEEcCCCCC-CCCC-------h
Q 039528 50 TSLTSLEYLDLSYNNFEG--PCPLSLLAHHSKLEVLVLSSTILVKTENFLPTF--QLKELGLANCSL-NVVP-------T 117 (136)
Q Consensus 50 ~~~~~l~~l~l~~~~~~~--~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~--~L~~l~l~~n~~-~~~~-------~ 117 (136)
..+++|+.|++++|++++ .++ ..+..+++|+.|++++|.+.....+..+. .|++|++++|.+ +.+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~-~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMS-SIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGT-THHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccch-hHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 468899999999999985 233 34678999999999999887665443333 899999999999 5555 2
Q ss_pred hhhcCCCCcEEEc
Q 039528 118 FLLHQYDLKYLDL 130 (136)
Q Consensus 118 ~~~~~~~L~~l~l 130 (136)
.+..+++|+.||-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 5788999998873
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.66 E-value=1.9e-08 Score=60.11 Aligned_cols=86 Identities=14% Similarity=0.086 Sum_probs=58.1
Q ss_pred CCcccEEEccCCccccccchhhhccCCCCEEEccCCc-CcCCCChHhhhcC----ccceEEEeccce-eeecc--CCCCC
Q 039528 28 LSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNN-FEGPCPLSLLAHH----SKLEVLVLSSTI-LVKTE--NFLPT 99 (136)
Q Consensus 28 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~~~----~~l~~l~l~~~~-~~~~~--~~~~~ 99 (136)
-..|+.+++++|.++......+..+++|++|+++++. ++.. ....+..+ ++|++|+++++. +++.+ ....+
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 3468888888888776656667788888888888875 4422 22234333 468888888864 55543 33456
Q ss_pred ccccEEEcCCCC-CCC
Q 039528 100 FQLKELGLANCS-LNV 114 (136)
Q Consensus 100 ~~L~~l~l~~n~-~~~ 114 (136)
++|+.|++++|. +++
T Consensus 139 ~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCCEEEEESCTTCCC
T ss_pred CCCCEEECCCCCCCCc
Confidence 788999988886 454
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.55 E-value=1.5e-07 Score=62.56 Aligned_cols=130 Identities=20% Similarity=0.156 Sum_probs=83.8
Q ss_pred CCcccEEEcCCCccc---------ccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHh-
Q 039528 4 LKNLFELNLKGNNVE---------GHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSL- 73 (136)
Q Consensus 4 l~~L~~l~l~~~~l~---------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~- 73 (136)
+++|+.|.+.+.... +.+...+..+|+|+.|.++++.-. .++. + .+++|++|++..+.+........
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence 568888888654321 123355677899999999887311 2222 3 37899999998887753222121
Q ss_pred hhcCccceEEEecc--ce-eee-----cc-CC--CCCccccEEEcCCCCCC-CCChhhh---cCCCCcEEEcCCCcCC
Q 039528 74 LAHHSKLEVLVLSS--TI-LVK-----TE-NF--LPTFQLKELGLANCSLN-VVPTFLL---HQYDLKYLDLSHNNLV 136 (136)
Q Consensus 74 ~~~~~~l~~l~l~~--~~-~~~-----~~-~~--~~~~~L~~l~l~~n~~~-~~~~~~~---~~~~L~~l~l~~n~l~ 136 (136)
...+|+|++|++.. +. ..+ .. .. ...++|+.|++.+|.++ ..+..+. .+++|++|+++.|.++
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence 12689999999853 21 111 11 11 24679999999999984 2333333 4778999999999763
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.45 E-value=2.1e-07 Score=55.62 Aligned_cols=81 Identities=11% Similarity=0.147 Sum_probs=38.2
Q ss_pred ccEEEcCCCcccccCcccccCCCcccEEEccCCc-cccccchhhhcc----CCCCEEEccCCc-CcCCCChHhhhcCccc
Q 039528 7 LFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQ-LSGSLSSTITSL----TSLEYLDLSYNN-FEGPCPLSLLAHHSKL 80 (136)
Q Consensus 7 L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~----~~l~~l~l~~~~-~~~~~~~~~~~~~~~l 80 (136)
|+.||++++.+++..-..+..+++|++|++++|. +++..-..+..+ ++|++|++++|. ++.. ....+..+++|
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-Gl~~L~~~~~L 141 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-GIIALHHFRNL 141 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-HHHHGGGCTTC
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-HHHHHhcCCCC
Confidence 4555555555555444445555555555555552 443322333332 245555555543 3321 11223445555
Q ss_pred eEEEeccc
Q 039528 81 EVLVLSST 88 (136)
Q Consensus 81 ~~l~l~~~ 88 (136)
++|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555553
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.32 E-value=3.2e-06 Score=56.58 Aligned_cols=110 Identities=15% Similarity=0.206 Sum_probs=63.3
Q ss_pred cCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEecccee-eeccCCCC
Q 039528 20 HLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTIL-VKTENFLP 98 (136)
Q Consensus 20 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~~~~ 98 (136)
....+|.++..|+.+.+..+... +....|..+..|+.+.+.. .+. .++..+|..+.+|+.+.+..+.. ....++..
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~ 332 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEGITQILDDAFAG 332 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTTCCEECTTTTTT
T ss_pred cccceeeecccccEEecccccce-ecCcccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCcccEehHhHhhC
Confidence 33455666777777776554332 4445566666777776642 332 34445566677777777765421 11235566
Q ss_pred CccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCC
Q 039528 99 TFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHN 133 (136)
Q Consensus 99 ~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n 133 (136)
+.+|+.+.+-. .++.+.. ++..|.+|+.+++.++
T Consensus 333 C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 333 CEQLERIAIPS-SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CTTCCEEEECT-TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCCCCEEEECc-ccCEEhHhHhhCCCCCCEEEECCc
Confidence 66777776633 3555543 6666777777766654
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.26 E-value=3.7e-05 Score=51.47 Aligned_cols=128 Identities=13% Similarity=0.137 Sum_probs=86.3
Q ss_pred CCCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccc
Q 039528 1 LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKL 80 (136)
Q Consensus 1 ~~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l 80 (136)
|.++..|+.+.+...... ....+|.++..|+.+.+... ++.+....|..+.+|+.+++..+ ++ .+...+|..+.+|
T Consensus 261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTC
T ss_pred eeecccccEEecccccce-ecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCC
Confidence 345677888887665443 55678889999999999643 55455677889999999999764 43 4556679899999
Q ss_pred eEEEecccee-eeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCc
Q 039528 81 EVLVLSSTIL-VKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNN 134 (136)
Q Consensus 81 ~~l~l~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~ 134 (136)
+.+.+..+.. ....++..+.+|+.+.+.++.... ..+..+.+|+.+.+..+.
T Consensus 337 ~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 337 ERIAIPSSVTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CEEEECTTCCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC---------
T ss_pred CEEEECcccCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCC
Confidence 9999976532 222477888899999998765421 356677888888876654
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.23 E-value=1.7e-05 Score=52.70 Aligned_cols=106 Identities=16% Similarity=0.223 Sum_probs=56.0
Q ss_pred cccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeec--cCCCCC
Q 039528 22 PNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKT--ENFLPT 99 (136)
Q Consensus 22 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~~~~~ 99 (136)
...+.++..|+.+.+..+ ++.+....+..+.+++.+.+..+ +. .++..++..+.+|+.+.+..+.+..+ .++..+
T Consensus 233 ~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c 309 (379)
T 4h09_A 233 DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDC 309 (379)
T ss_dssp TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTC
T ss_pred cccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCC
Confidence 344555666666666544 33333445555666666665433 22 23334466666666666665544333 245555
Q ss_pred ccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcC
Q 039528 100 FQLKELGLANCSLNVVPT-FLLHQYDLKYLDLS 131 (136)
Q Consensus 100 ~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~ 131 (136)
.+|+.+.+.. .++.+.. ++..|.+|+.+.+.
T Consensus 310 ~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 310 VKLSSVTLPT-ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTCCEEECCT-TCCEECTTTTTTCTTCCCCCCC
T ss_pred CCCCEEEcCc-cccEEHHHHhhCCCCCCEEEEC
Confidence 5666666643 2444442 55566666655553
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.17 E-value=1.8e-05 Score=52.98 Aligned_cols=81 Identities=15% Similarity=0.118 Sum_probs=50.3
Q ss_pred hhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeec--cCCCCCccccEEEcCCCCCCCCC-hhhhcCCC
Q 039528 48 TITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKT--ENFLPTFQLKELGLANCSLNVVP-TFLLHQYD 124 (136)
Q Consensus 48 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~ 124 (136)
.+..+.+|+.+.+..+ +. .++..++..+.+|+.+++..+ +..+ .++..+.+|+.+.+..+ +..++ .++..|.+
T Consensus 292 ~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN 367 (394)
T ss_dssp TTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred cccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence 4555666777766543 32 344455777777777777654 2222 36666677787777554 55554 36777778
Q ss_pred CcEEEcCC
Q 039528 125 LKYLDLSH 132 (136)
Q Consensus 125 L~~l~l~~ 132 (136)
|+.+++..
T Consensus 368 L~~i~lp~ 375 (394)
T 4fs7_A 368 LKKVELPK 375 (394)
T ss_dssp CCEEEEEG
T ss_pred CCEEEECC
Confidence 88777653
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.15 E-value=8.9e-06 Score=54.43 Aligned_cols=57 Identities=14% Similarity=0.143 Sum_probs=28.5
Q ss_pred CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEc
Q 039528 2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60 (136)
Q Consensus 2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l 60 (136)
.++.+|+.+.+..+ ++.....+|.+|.+|+.+.+.++ ++.+....|..+.+|+.+.+
T Consensus 68 ~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~ 124 (394)
T 4fs7_A 68 QGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILL 124 (394)
T ss_dssp TTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred hCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcc
Confidence 34555666666432 44344455666666666666543 33233344445555444433
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.12 E-value=7.3e-06 Score=49.85 Aligned_cols=110 Identities=19% Similarity=0.169 Sum_probs=75.4
Q ss_pred ccCCCcccEEEccCC-cccc----ccchhhhccCCCCEEEccCCcCcCCC---ChHhhhcCccceEEEeccceeeecc--
Q 039528 25 LKYLSHLKVFDISQN-QLSG----SLSSTITSLTSLEYLDLSYNNFEGPC---PLSLLAHHSKLEVLVLSSTILVKTE-- 94 (136)
Q Consensus 25 ~~~l~~L~~L~l~~~-~~~~----~~~~~~~~~~~l~~l~l~~~~~~~~~---~~~~~~~~~~l~~l~l~~~~~~~~~-- 94 (136)
+..-+.|++|+++++ .+.. .+...+..-..|+.|++++|.+.... .+.++...+.|++|++++|.+.+.+
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345678888888875 6652 23345555678889999888885221 1234556778999999998887765
Q ss_pred ----CCCCCccccEEEcCCC---CCCC-----CChhhhcCCCCcEEEcCCCc
Q 039528 95 ----NFLPTFQLKELGLANC---SLNV-----VPTFLLHQYDLKYLDLSHNN 134 (136)
Q Consensus 95 ----~~~~~~~L~~l~l~~n---~~~~-----~~~~~~~~~~L~~l~l~~n~ 134 (136)
+.....+|+.|+++++ .++. +..++..-+.|+.|+++.|.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 3455567999999765 4432 44467777889999988764
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.03 E-value=4.3e-05 Score=50.79 Aligned_cols=117 Identities=13% Similarity=0.136 Sum_probs=80.0
Q ss_pred CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528 3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV 82 (136)
Q Consensus 3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~ 82 (136)
++..|+.+.+..+ ++.....+|.++..|+.+.+..+ +.......|..+.+|+.+.+..+.++ .++..+|..+.+|+.
T Consensus 238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 238 GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSS 314 (379)
T ss_dssp TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCE
T ss_pred CCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCCCCCE
Confidence 4566777777554 44455667888999999988654 44355567888999999999887776 566667888999999
Q ss_pred EEecccee-eeccCCCCCccccEEEcCCCCCCCCC-hhhhcCC
Q 039528 83 LVLSSTIL-VKTENFLPTFQLKELGLANCSLNVVP-TFLLHQY 123 (136)
Q Consensus 83 l~l~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~ 123 (136)
+.+..+.. ....++..+.+|+.+.+-.+ ++.+. .++..+.
T Consensus 315 i~lp~~l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 315 VTLPTALKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred EEcCccccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 99976532 22236777778888776432 44443 2455443
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.70 E-value=3.2e-05 Score=47.05 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=76.4
Q ss_pred CCcccEEEcCCC-ccccc----CcccccCCCcccEEEccCCccccc----cchhhhccCCCCEEEccCCcCcCCCCh---
Q 039528 4 LKNLFELNLKGN-NVEGH----LPNCLKYLSHLKVFDISQNQLSGS----LSSTITSLTSLEYLDLSYNNFEGPCPL--- 71 (136)
Q Consensus 4 l~~L~~l~l~~~-~l~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~l~~l~l~~~~~~~~~~~--- 71 (136)
-+.|+.|+++++ .+.+. +...+..-..|+.|++++|.+... +...+..-..|++|+++.|.+......
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 467899999985 87654 344566778999999999998743 334455667899999999999633221
Q ss_pred HhhhcCccceEEEeccc---eeeecc------CCCCCccccEEEcCCCCC
Q 039528 72 SLLAHHSKLEVLVLSST---ILVKTE------NFLPTFQLKELGLANCSL 112 (136)
Q Consensus 72 ~~~~~~~~l~~l~l~~~---~~~~~~------~~~~~~~L~~l~l~~n~~ 112 (136)
.++.....|++|++.++ .+.+.. +....++|+.|+++.+.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 23445678999999864 333322 234455889999987765
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.41 E-value=0.00054 Score=38.83 Aligned_cols=35 Identities=26% Similarity=0.270 Sum_probs=19.8
Q ss_pred cccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528 101 QLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL 135 (136)
Q Consensus 101 ~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l 135 (136)
+++.|++++|.++.++. .+..+++|+.|++++|++
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 45566666666655553 445555666666666554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.28 E-value=0.0012 Score=37.42 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=37.0
Q ss_pred EEEcCCCccc-ccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCc
Q 039528 9 ELNLKGNNVE-GHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFE 66 (136)
Q Consensus 9 ~l~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 66 (136)
.++-+++.++ ..+|..+ -+++++|++++|.++...++.|..+++|+.+++.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666665 2344322 235778888888887655666777888888888877664
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=85.99 E-value=1.2 Score=23.67 Aligned_cols=47 Identities=17% Similarity=0.118 Sum_probs=28.1
Q ss_pred cccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCC
Q 039528 16 NVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63 (136)
Q Consensus 16 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~ 63 (136)
.++.....+|.+|.+|+.+.+..+ ++.+....|..+.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344444556677777777777654 33344556666777777666543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=79.36 E-value=5.1 Score=21.26 Aligned_cols=38 Identities=8% Similarity=0.060 Sum_probs=29.8
Q ss_pred CCCCCcccEEEcCCCcccccCcccccCCCcccEEEccCC
Q 039528 1 LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQN 39 (136)
Q Consensus 1 ~~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 39 (136)
|.++..|+.+.+-.+ ++.....+|.+|.+|+.+.+...
T Consensus 16 F~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred hcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 467888998888765 34466778999999999998664
Done!