BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039529
(477 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 203 bits (516), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/267 (44%), Positives = 160/267 (59%), Gaps = 18/267 (6%)
Query: 18 CAELIKALPGQPSNVSFNQYSGYIVTDAEHGRALFYYFAEAQSPDHLSLPLTLWLNGGPG 77
A+ I LPGQP+ V F+ YSGYI D GR+LFY EA D PL LWLNGGPG
Sbjct: 7 AADRIARLPGQPA-VDFDMYSGYITVDEGAGRSLFYLLQEAPE-DAQPAPLVLWLNGGPG 64
Query: 78 CSSIGFGVFMEHGPFQPRENGK-LLKNEYSWNLESNMLYVDSPIGVGYSYSNTSSDYKLW 136
CSS+ +G E G F+ + G L+ NEY WN +N+L++DSP GVG+SY+NTSSD
Sbjct: 65 CSSVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 124
Query: 137 NDAATAEDNLRFIVNWFKEFPQYKDSEFFLAGDSYAGHYVPQLATLIMKYNKQPNIRPIK 196
D TA D+ F+ WF+ FP YK +F++AG+SYAGHYVP+L+ L+ + +K P I
Sbjct: 125 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHR-SKNP---VIN 180
Query: 197 LRGIALGNPLLDLDISVLGG-EYLWSHGAISDETLMLEKTVC-NDSKYLREFVHGNNHSQ 254
L+G +GN L+D +G E+ W+HG +SD+T K C +DS F+H S
Sbjct: 181 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDS-----FIH---PSP 232
Query: 255 GCNQVFDRISEEVGADIDRQDLLSPFC 281
C+ D + E G +ID L +P C
Sbjct: 233 ACDAATDVATAEQG-NIDMYSLYTPVC 258
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 203 bits (516), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/267 (44%), Positives = 160/267 (59%), Gaps = 18/267 (6%)
Query: 18 CAELIKALPGQPSNVSFNQYSGYIVTDAEHGRALFYYFAEAQSPDHLSLPLTLWLNGGPG 77
A+ I LPGQP+ V F+ YSGYI D GR+LFY EA D PL LWLNGGPG
Sbjct: 2 AADRIARLPGQPA-VDFDMYSGYITVDEGAGRSLFYLLQEAPE-DAQPAPLVLWLNGGPG 59
Query: 78 CSSIGFGVFMEHGPFQPRENGK-LLKNEYSWNLESNMLYVDSPIGVGYSYSNTSSDYKLW 136
CSS+ +G E G F+ + G L+ NEY WN +N+L++DSP GVG+SY+NTSSD
Sbjct: 60 CSSVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 119
Query: 137 NDAATAEDNLRFIVNWFKEFPQYKDSEFFLAGDSYAGHYVPQLATLIMKYNKQPNIRPIK 196
D TA D+ F+ WF+ FP YK +F++AG+SYAGHYVP+L+ L+ + +K P I
Sbjct: 120 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHR-SKNP---VIN 175
Query: 197 LRGIALGNPLLDLDISVLGG-EYLWSHGAISDETLMLEKTVC-NDSKYLREFVHGNNHSQ 254
L+G +GN L+D +G E+ W+HG +SD+T K C +DS F+H S
Sbjct: 176 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDS-----FIHP---SP 227
Query: 255 GCNQVFDRISEEVGADIDRQDLLSPFC 281
C+ D + E G +ID L +P C
Sbjct: 228 ACDAATDVATAEQG-NIDMYSLYTPVC 253
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/267 (44%), Positives = 160/267 (59%), Gaps = 18/267 (6%)
Query: 18 CAELIKALPGQPSNVSFNQYSGYIVTDAEHGRALFYYFAEAQSPDHLSLPLTLWLNGGPG 77
A+ I LPGQP+ V F+ YSGYI D GR+LFY EA D PL LWLNGGPG
Sbjct: 3 AADRIARLPGQPA-VDFDMYSGYITVDEGAGRSLFYLLQEAPE-DAQPAPLVLWLNGGPG 60
Query: 78 CSSIGFGVFMEHGPFQPRENGK-LLKNEYSWNLESNMLYVDSPIGVGYSYSNTSSDYKLW 136
CSS+ +G E G F+ + G L+ NEY WN +N+L++DSP GVG+SY+NTSSD
Sbjct: 61 CSSVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 120
Query: 137 NDAATAEDNLRFIVNWFKEFPQYKDSEFFLAGDSYAGHYVPQLATLIMKYNKQPNIRPIK 196
D TA D+ F+ WF+ FP YK +F++AG+SYAGHYVP+L+ L+ + +K P I
Sbjct: 121 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHR-SKNP---VIN 176
Query: 197 LRGIALGNPLLDLDISVLGG-EYLWSHGAISDETLMLEKTVC-NDSKYLREFVHGNNHSQ 254
L+G +GN L+D +G E+ W+HG +SD+T K C +DS F+H S
Sbjct: 177 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDS-----FIHP---SP 228
Query: 255 GCNQVFDRISEEVGADIDRQDLLSPFC 281
C+ D + E G +ID L +P C
Sbjct: 229 ACDAATDVATAEQG-NIDMYSLYTPVC 254
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 202 bits (514), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 119/267 (44%), Positives = 160/267 (59%), Gaps = 18/267 (6%)
Query: 18 CAELIKALPGQPSNVSFNQYSGYIVTDAEHGRALFYYFAEAQSPDHLSLPLTLWLNGGPG 77
A+ I LPGQP+ V F+ YSGYI D GR+LFY EA D PL LWLNGGPG
Sbjct: 7 AADRIARLPGQPA-VDFDMYSGYITVDEGAGRSLFYLLQEAPE-DAQPAPLVLWLNGGPG 64
Query: 78 CSSIGFGVFMEHGPFQPRENGK-LLKNEYSWNLESNMLYVDSPIGVGYSYSNTSSDYKLW 136
CSS+ +G E G F+ + G L+ NEY WN +N+L++DSP GVG+SY+NTSSD
Sbjct: 65 CSSVAYGASEELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 124
Query: 137 NDAATAEDNLRFIVNWFKEFPQYKDSEFFLAGDSYAGHYVPQLATLIMKYNKQPNIRPIK 196
D TA D+ F+ WF+ FP YK +F++AG+SYAGHYVP+L+ L+ + +K P I
Sbjct: 125 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHR-SKNP---VIN 180
Query: 197 LRGIALGNPLLDLDISVLGG-EYLWSHGAISDETLMLEKTVC-NDSKYLREFVHGNNHSQ 254
L+G +GN L+D +G E+ W+HG +SD+T K C +DS F+H S
Sbjct: 181 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDS-----FIH---PSP 232
Query: 255 GCNQVFDRISEEVGADIDRQDLLSPFC 281
C+ D + E G +ID L +P C
Sbjct: 233 ACDAATDVATAEQG-NIDMYSLYTPVC 258
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/262 (41%), Positives = 156/262 (59%), Gaps = 15/262 (5%)
Query: 22 IKALPGQPSNVSFNQYSGYIVTDAEHGRALFYYFAEAQSPDHLSLPLTLWLNGGPGCSSI 81
I LPGQP+ V+F Y GY+ D +GRAL+Y+F EA + D + PL LWLNGGPGCSSI
Sbjct: 10 ILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLNGGPGCSSI 69
Query: 82 GFGVFMEHGPFQPRENGK-LLKNEYSWNLESNMLYVDSPIGVGYSYSNTSSDYKLWNDAA 140
G G E G F+ NG+ LL NEY+WN +N+L+ +SP GVG+SYSNTSSD + D
Sbjct: 70 GLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSYSNTSSDLSM-GDDK 128
Query: 141 TAEDNLRFIVNWFKEFPQYKDSEFFLAGDSYAGHYVPQLATLIMKYNKQPNIRPIKLRGI 200
A+D F+V WF+ FP Y EF++AG+S GH++PQL+ ++ Y + N I +G+
Sbjct: 129 MAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVV--YRNRNNSPFINFQGL 184
Query: 201 ALGNPLLDLDISVLGG-EYLWSHGAISDETLMLEKTVCNDSKYLREFVHGNNHSQGCNQV 259
+ + L + ++G E W HG ISDET VC + ++ + C +V
Sbjct: 185 LVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHP-------TPECTEV 237
Query: 260 FDRISEEVGADIDRQDLLSPFC 281
+++ E G +I+ + +P C
Sbjct: 238 WNKALAEQG-NINPYTIYTPTC 258
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 147/475 (30%), Positives = 230/475 (48%), Gaps = 55/475 (11%)
Query: 22 IKALPGQPSNVSFNQYSGYIVTDAEHGRALFYYFAEAQSPDHLSLPLTLWLNGGPGCSSI 81
I+ LPG SF QYSGY+ + + L Y+F E+Q D + P+ LWLNGGPGCSS+
Sbjct: 7 IQRLPGLAKQPSFRQYSGYLKSSGS--KHLHYWFVESQK-DPENSPVVLWLNGGPGCSSL 63
Query: 82 GFGVFMEHGPFQPRENGKLLK-NEYSWNLESNMLYVDSPIGVGYSYSNTSSDYKLWNDAA 140
G+ EHGPF + +G L+ N YSWNL +N+LY++SP GVG+SYS+ + ND
Sbjct: 64 D-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSD--DKFYATNDTE 120
Query: 141 TAEDNLRFIVNWFKEFPQYKDSEFFLAGDSYAGHYVPQLATLIMKYNKQPNIRPIKLRGI 200
A+ N + ++F+ FP+YK+++ FL G+SYAG Y+P LA L+M + P+ + L+G+
Sbjct: 121 VAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVM---QDPS---MNLQGL 174
Query: 201 ALGNPLLDLDISVLGGEYL-WSHGAISDETLMLEKTVCNDSKYLREFVHGNNHSQGCNQV 259
A+GN L + + Y + HG + + +T C + +N C
Sbjct: 175 AVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFY---DNKDLECVTN 231
Query: 260 FDRISEEVG-ADIDRQDLLSPFC--IPISTSTEQ-----------FKPIDKHGKIHKTMA 305
++ VG + ++ +L +P +P E+ F + H+ +
Sbjct: 232 LQEVARIVGNSGLNIYNLYAPCAGGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWHQALL 291
Query: 306 RRG--ASTGDPCI-YGRIFTYLNKPKVQKALHANTTHLPFHWDFCDGPLVYQFEDFELNI 362
R G PC TYLN P V+KAL+ LP WD C+ + Q+ ++
Sbjct: 292 RSGDKVRMDPPCTNTTAASTYLNNPYVRKALNI-PEQLP-QWDMCNFLVNLQYRRLYRSM 349
Query: 363 IPLVSELL-KEGIPILLYSGDQDTKIPLTQTRLIANSLAKDLKLLPVTTYGPW---YND- 417
+LL + ILLY+GD D +SL + +++ PW Y D
Sbjct: 350 NSQYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEV----QRRPWLVKYGDS 405
Query: 418 -KQVGGWSQSFGAFRDGKNVTNLTFATVRGGAHEVPFTSPSEALTLFRSLLTGSP 471
+Q+ G+ + F +++ F T++G H VP P A T+F L P
Sbjct: 406 GEQIAGFVKEF---------SHIAFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQP 451
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 120/186 (64%), Gaps = 13/186 (6%)
Query: 22 IKALPGQPSNVSFNQYSGYIVTDAEHGRALFYYFAEAQSPDHLSLPLTLWLNGGPGCSSI 81
I+ LPG SF QYSGY+ + L Y+F E+Q D + P+ LWLNGGPGCSS+
Sbjct: 9 IQRLPGLAKQPSFRQYSGYL--KGSGSKHLHYWFVESQK-DPENSPVVLWLNGGPGCSSL 65
Query: 82 GFGVFMEHGPFQPRENGKLLK-NEYSWNLESNMLYVDSPIGVGYSYSNTSSDYKLWNDAA 140
G+ EHGPF + +G L+ N YSWNL +N+LY++SP GVG+SYS+ + ND
Sbjct: 66 D-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSD--DKFYATNDTE 122
Query: 141 TAEDNLRFIVNWFKEFPQYKDSEFFLAGDSYAGHYVPQLATLIMKYNKQPNIRPIKLRGI 200
A+ N + ++F+ FP+YK+++ FL G+SYAG Y+P LA L+M + P+ + L+G+
Sbjct: 123 VAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVM---QDPS---MNLQGL 176
Query: 201 ALGNPL 206
A+GN L
Sbjct: 177 AVGNGL 182
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 127/450 (28%), Positives = 202/450 (44%), Gaps = 64/450 (14%)
Query: 36 QYSGYIVTDAEHGRALFYYFAEAQSPDHLSLPLTLWLNGGPGCSSIGFGVFMEHGPFQPR 95
QY+GY+ + E F+ F P P+ LWLNGGPGCSS+ G+F E GP
Sbjct: 16 QYTGYLDVEDEDKHFFFWTFESRNDP--AKDPVILWLNGGPGCSSLT-GLFFELGPSSIG 72
Query: 96 ENGKLLKNEYSWNLESNMLYVDSPIGVGYSYSNTSSDYKLWNDAATAEDNLRFIVNWFKE 155
+ K + N YSWN + ++++D P+ VG+SYS +S + N A +D F+ +F +
Sbjct: 73 PDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSG---VSNTVAAGKDVYNFLELFFDQ 129
Query: 156 FPQY--KDSEFFLAGDSYAGHYVPQLATLIMKYNKQPNIRPIKLRGIALGNPLLDLDISV 213
FP+Y K +F +AG+SYAGHY+P A+ I+ + R L + +GN L D
Sbjct: 130 FPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKD----RNFNLTSVLIGNGLTD----- 180
Query: 214 LGGEYLWSHGAISDETLMLEKTVCNDSKYLREFVHGNNHSQGCNQVFDRISEEVG---AD 270
+ E C + S+ C+ + D + +G +
Sbjct: 181 -----------PLTQYNYYEPMACGEGGEPSVL-----PSEECSAMEDSLERCLGLIESC 224
Query: 271 IDRQDLLSPFCIP--ISTSTEQFKPIDKHGKIHKTMARRGASTGDPC--IYGRIFTYLNK 326
D Q + S C+P I + Q P + G+ + R+ G+ C I YLN+
Sbjct: 225 YDSQSVWS--CVPATIYCNNAQLAPYQRTGR-NVYDIRKDCEGGNLCYPTLQDIDDYLNQ 281
Query: 327 PKVQKALHANTTHLPFHWDFCDGPLVYQF---EDFELNIIPLVSELLKEGIPILLYSGDQ 383
V++A+ A H++ C+ + F D+ V++LL + +PIL+Y+GD+
Sbjct: 282 DYVKEAVGAEVD----HYESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDK 337
Query: 384 DTKIPLTQTRLIANSLAKD--LKLLPVTTYGPWYNDKQVGGWSQSFGAFRDG--KNVTNL 439
D I N L +LP Y + ++V W+ S G K+ +
Sbjct: 338 D---------FICNWLGNKAWTDVLP-WKYDEEFASQKVRNWTASITDEVAGEVKSYKHF 387
Query: 440 TFATVRGGAHEVPFTSPSEALTLFRSLLTG 469
T+ V G H VPF P AL++ + G
Sbjct: 388 TYLRVFNGGHMVPFDVPENALSMVNEWIHG 417
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 126/450 (28%), Positives = 200/450 (44%), Gaps = 64/450 (14%)
Query: 36 QYSGYIVTDAEHGRALFYYFAEAQSPDHLSLPLTLWLNGGPGCSSIGFGVFMEHGPFQPR 95
QY+GY+ + E F+ F P P+ LWLNGGPGCSS+ G+F GP
Sbjct: 16 QYTGYLDVEDEDKHFFFWTFESRNDP--AKDPVILWLNGGPGCSSLT-GLFFALGPSSIG 72
Query: 96 ENGKLLKNEYSWNLESNMLYVDSPIGVGYSYSNTSSDYKLWNDAATAEDNLRFIVNWFKE 155
+ K + N YSWN + ++++D P+ VG+SYS +S + N A +D F+ +F +
Sbjct: 73 PDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSG---VSNTVAAGKDVYNFLELFFDQ 129
Query: 156 FPQY--KDSEFFLAGDSYAGHYVPQLATLIMKYNKQPNIRPIKLRGIALGNPLLDLDISV 213
FP+Y K +F +AG SYAGHY+P A+ I+ + R L + +GN L D
Sbjct: 130 FPEYVNKGQDFHIAGASYAGHYIPVFASEILSHKD----RNFNLTSVLIGNGLTD----- 180
Query: 214 LGGEYLWSHGAISDETLMLEKTVCNDSKYLREFVHGNNHSQGCNQVFDRISEEVG---AD 270
+ E C + S+ C+ + D + +G +
Sbjct: 181 -----------PLTQYNYYEPMACGEGGEPSVL-----PSEECSAMEDSLERCLGLIESC 224
Query: 271 IDRQDLLSPFCIP--ISTSTEQFKPIDKHGKIHKTMARRGASTGDPC--IYGRIFTYLNK 326
D Q + S C+P I + Q P + G+ + R+ G+ C I YLN+
Sbjct: 225 YDSQSVWS--CVPATIYCNNAQLAPYQRTGR-NVYDIRKDCEGGNLCYPTLQDIDDYLNQ 281
Query: 327 PKVQKALHANTTHLPFHWDFCDGPLVYQF---EDFELNIIPLVSELLKEGIPILLYSGDQ 383
V++A+ A H++ C+ + F D+ V++LL + +PIL+Y+GD+
Sbjct: 282 DYVKEAVGAEVD----HYESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDK 337
Query: 384 DTKIPLTQTRLIANSLAKD--LKLLPVTTYGPWYNDKQVGGWSQSFGAFRDG--KNVTNL 439
D I N L +LP Y + ++V W+ S G K+ +
Sbjct: 338 D---------FICNWLGNKAWTDVLP-WKYDEEFASQKVRNWTASITDEVAGEVKSYKHF 387
Query: 440 TFATVRGGAHEVPFTSPSEALTLFRSLLTG 469
T+ V G H VPF P AL++ + G
Sbjct: 388 TYLRVFNGGHMVPFDVPENALSMVNEWIHG 417
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 113/431 (26%), Positives = 193/431 (44%), Gaps = 44/431 (10%)
Query: 44 DAEHGRALFYYFAEAQSPDHLSLPLTLWLNGGPGCSSIGFGVFMEHGPFQPRENGKLLKN 103
D+ F+ F S ++ PL +WLNGGPGCSS+ G +E GPF+ +GKL N
Sbjct: 45 DSSDLEYFFWKFTNNDSNGNVDRPLIIWLNGGPGCSSMD-GALVESGPFRVNSDGKLYLN 103
Query: 104 EYSWNLESNMLYVDSPIGVGYSYSNTSSDYKLWNDAATAEDNLR--------FIVNWFKE 155
E SW + ++L++D P G G+S + K+ D +++L F+ N+FK
Sbjct: 104 EGSWISKGDLLFIDQPTGTGFSVEQNKDEGKI--DKNKFDEDLEDVTKHFMDFLENYFKI 161
Query: 156 FPQYKDSEFFLAGDSYAGHYVPQLATLIMKYNKQPNI--RPIKLRGIALGNPLLDLDISV 213
FP+ + L+G+SYAG Y+P A I+ +NK I L+ + +GN +D +
Sbjct: 162 FPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLKALLIGNGWIDPNTQS 221
Query: 214 LGGEYLWSHGAISDETLMLEKTVCNDSKYLREFVHGNNHSQGCNQVFDRISEEVGADIDR 273
L YL +EK + ++S F H N + C + + S + A
Sbjct: 222 LS--YL---------PFAMEKKLIDESN--PNFKHLTNAHENCQNLINSASTDEAAHFSY 268
Query: 274 QDLLSPFCIPISTSTE--QFKPIDKHGKIHKTMARRGASTGD--PCIYGRIFTYLNKPKV 329
Q+ + + +S + E Q D + + S G P + + + P V
Sbjct: 269 QECENILNLLLSYTRESSQKGTADCLNMYNFNLKDSYPSCGMNWPKDISFVSKFFSTPGV 328
Query: 330 QKALHANTTHLPFHWDFCDGPLVYQFED-FELNIIPLVSELLKEGIPILLYSGDQDTKIP 388
+LH ++ + HW C + + + I L+ LL+ GI I+L++GD+D
Sbjct: 329 IDSLHLDSDKID-HWKECTNSVGTKLSNPISKPSIHLLPGLLESGIEIVLFNGDKDL--- 384
Query: 389 LTQTRLIANSLAKDLKLLPVTTYG------PWYNDKQVGGWSQSFGAFRDGKNVTNLTFA 442
+ + + +++ +LK + + W + + S+ F + K NLTF
Sbjct: 385 ICNNKGVLDTI-DNLKWGGIKGFSDDAVSFDWIHKSKSTDDSEEFSGYV--KYDRNLTFV 441
Query: 443 TVRGGAHEVPF 453
+V +H VPF
Sbjct: 442 SVYNASHMVPF 452
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 87/163 (53%), Gaps = 16/163 (9%)
Query: 313 DPCIYGRIFTYLNKPKVQKALHANTT-HLPFHWDFCDGPLVYQFEDFELNIIPLVSELLK 371
DPC Y N+ VQ ALHAN T + + W C + + D +++P+ EL+
Sbjct: 5 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 64
Query: 372 EGIPILLYSGDQDTKIPLTQTRLIANSLAKDLKLLPVTT-YGPWYNDKQVGGWSQSFGAF 430
G+ I ++SGD D +PLT TR +L LP TT + PWY+D++VGGWSQ +
Sbjct: 65 AGLRIWVFSGDTDAVVPLTATRYSIGALG-----LPTTTSWYPWYDDQEVGGWSQVY--- 116
Query: 431 RDGKNVTNLTFATVRGGAHEVPFTSPSEALTLFRSLLTGSPLP 473
LT +VRG HEVP P +AL LF+ L G P+P
Sbjct: 117 ------KGLTLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 153
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 114 bits (286), Expect = 8e-26, Method: Composition-based stats.
Identities = 63/163 (38%), Positives = 87/163 (53%), Gaps = 16/163 (9%)
Query: 313 DPCIYGRIFTYLNKPKVQKALHANTT-HLPFHWDFCDGPLVYQFEDFELNIIPLVSELLK 371
DPC Y N+ VQ ALHAN T + + W C + + D +++P+ EL+
Sbjct: 3 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 372 EGIPILLYSGDQDTKIPLTQTRLIANSLAKDLKLLPVTT-YGPWYNDKQVGGWSQSFGAF 430
G+ I ++SGD D +PLT TR +L LP TT + PWY+D++VGGWSQ +
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALG-----LPTTTSWYPWYDDQEVGGWSQVY--- 114
Query: 431 RDGKNVTNLTFATVRGGAHEVPFTSPSEALTLFRSLLTGSPLP 473
LT +VRG HEVP P +AL LF+ L G P+P
Sbjct: 115 ------KGLTLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 114 bits (286), Expect = 8e-26, Method: Composition-based stats.
Identities = 63/163 (38%), Positives = 87/163 (53%), Gaps = 16/163 (9%)
Query: 313 DPCIYGRIFTYLNKPKVQKALHANTT-HLPFHWDFCDGPLVYQFEDFELNIIPLVSELLK 371
DPC Y N+ VQ ALHAN T + + W C + + D +++P+ EL+
Sbjct: 3 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 372 EGIPILLYSGDQDTKIPLTQTRLIANSLAKDLKLLPVTT-YGPWYNDKQVGGWSQSFGAF 430
G+ I ++SGD D +PLT TR +L LP TT + PWY+D++VGGWSQ +
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALG-----LPTTTSWYPWYDDQEVGGWSQVY--- 114
Query: 431 RDGKNVTNLTFATVRGGAHEVPFTSPSEALTLFRSLLTGSPLP 473
LT +VRG HEVP P +AL LF+ L G P+P
Sbjct: 115 ------KGLTLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 114 bits (286), Expect = 8e-26, Method: Composition-based stats.
Identities = 63/163 (38%), Positives = 87/163 (53%), Gaps = 16/163 (9%)
Query: 313 DPCIYGRIFTYLNKPKVQKALHANTT-HLPFHWDFCDGPLVYQFEDFELNIIPLVSELLK 371
DPC Y N+ VQ ALHAN T + + W C + + D +++P+ EL+
Sbjct: 3 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 372 EGIPILLYSGDQDTKIPLTQTRLIANSLAKDLKLLPVTT-YGPWYNDKQVGGWSQSFGAF 430
G+ I ++SGD D +PLT TR +L LP TT + PWY+D++VGGWSQ +
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALG-----LPTTTSWYPWYDDQEVGGWSQVY--- 114
Query: 431 RDGKNVTNLTFATVRGGAHEVPFTSPSEALTLFRSLLTGSPLP 473
LT +VRG HEVP P +AL LF+ L G P+P
Sbjct: 115 ------KGLTLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 107 bits (267), Expect = 2e-23, Method: Composition-based stats.
Identities = 60/165 (36%), Positives = 91/165 (55%), Gaps = 17/165 (10%)
Query: 313 DPCIYGRIFTYLNKPKVQKALHANTTHL-PFHWDFCDGPLVYQFEDFELNIIPLVSELLK 371
DPC YLN P+VQ ALHAN + + + W C + Q+ +++P+ EL++
Sbjct: 5 DPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELIQ 64
Query: 372 EGIPILLYSGDQDTKIPLTQTRLIANSLAKDLKLLPVTTYGPWY---NDKQVGGWSQSFG 428
G+ + +YSGD D+ +P++ TR SLA L+L T++ PWY +++VGGWS +
Sbjct: 65 AGLRVWVYSGDTDSVVPVSSTR---RSLAA-LELPVKTSWYPWYMAPTEREVGGWSVQY- 119
Query: 429 AFRDGKNVTNLTFATVRGGAHEVPFTSPSEALTLFRSLLTGSPLP 473
LT+ TVRG H VP P++A LF+ L G P+P
Sbjct: 120 --------EGLTYVTVRGAGHLVPVHRPAQAFLLFKQFLKGEPMP 156
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 21/156 (13%)
Query: 322 TYLNKPKVQKALHANTTHLPFHWDFCDGPLVYQFEDFELNIIPLVSELLK-EGIPILLYS 380
TYLN P V+KAL+ LP WD C+ + Q+ ++ +LL + ILLY+
Sbjct: 13 TYLNNPYVRKALNI-PEQLP-QWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYN 70
Query: 381 GDQDTKIPLTQTRLIANSLAKDLKLLPVTTYGPW---YND--KQVGGWSQSFGAFRDGKN 435
GD D +SL + +++ PW Y D +Q+ G+ + F
Sbjct: 71 GDVDMACNFMGDEWFVDSLNQKMEV----QRRPWLVKYGDSGEQIAGFVKEF-------- 118
Query: 436 VTNLTFATVRGGAHEVPFTSPSEALTLFRSLLTGSP 471
+++ F T++G H VP P A T+F L P
Sbjct: 119 -SHIAFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQP 153
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|N Chain N, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|FF Chain f, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|NN Chain n, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|F Chain F, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|N Chain N, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|FF Chain f, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|NN Chain n, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 546
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 93/226 (41%), Gaps = 27/226 (11%)
Query: 41 IVTDAEHGRALFYYFAEAQSPDHLSLPLTLWLNGGPGCSSIGFGVFMEHGPFQPRENGKL 100
IVTDA L Y A+A + D + + + P ++ G+ ++HG P ++
Sbjct: 173 IVTDA----VLSVYDAQADNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDMPTRV 228
Query: 101 LKNEYSWNLESNMLYVDSPIGVGYSYSNTSSDYKL-WNDAATAEDNLRFIVNWFKEFPQY 159
KN Y L ++ Y + + G+ YS+ KL ++ + L+ I++ E
Sbjct: 229 -KNAYVLILNVSLEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGM 287
Query: 160 KDSEFF----------LAGDSYAGHYVPQLATLIMKYNKQPNIRPIKL-RGIALGNPLLD 208
+ F ++ D +A H + L ++ K+ N+ ++L G N + D
Sbjct: 288 DPDKGFVIINQKGIDPMSLDVFAKHNI-----LALRRAKRRNMERLQLVTGGEAQNSVED 342
Query: 209 LDISVLGGEYLWSHGAISDE--TLMLEKTVCNDSKYLREFVHGNNH 252
L +LG L I +E T + E T D K + G+ H
Sbjct: 343 LSPQILGFSGLVYQETIGEEKFTYVTENT---DPKSCTILIKGSTH 385
>pdb|3IR1|A Chain A, Crystal Structure Of Lipoprotein Gna1946 From Neisseria
Meningitidis
pdb|3IR1|B Chain B, Crystal Structure Of Lipoprotein Gna1946 From Neisseria
Meningitidis
pdb|3IR1|C Chain C, Crystal Structure Of Lipoprotein Gna1946 From Neisseria
Meningitidis
pdb|3IR1|D Chain D, Crystal Structure Of Lipoprotein Gna1946 From Neisseria
Meningitidis
pdb|3IR1|E Chain E, Crystal Structure Of Lipoprotein Gna1946 From Neisseria
Meningitidis
pdb|3IR1|F Chain F, Crystal Structure Of Lipoprotein Gna1946 From Neisseria
Meningitidis
Length = 245
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 191 NIRPIKLRGIALGNPLLDLDISVLGGEYLWSHGAISDETLMLE-----------KTVCND 239
NI+ ++L L D+D +V+ G Y S G E L E KT D
Sbjct: 147 NIKIVELEAAQLPRSRADVDFAVVNGNYAISSGMKLTEALFQEPSFAYVNWSAVKTADKD 206
Query: 240 SKYLREFVHGNN 251
S++L++ N
Sbjct: 207 SQWLKDVTEAYN 218
>pdb|3GXA|A Chain A, Crystal Structure Of Gna1946
pdb|3GXA|B Chain B, Crystal Structure Of Gna1946
pdb|3GXA|C Chain C, Crystal Structure Of Gna1946
pdb|3GXA|D Chain D, Crystal Structure Of Gna1946
pdb|3GXA|E Chain E, Crystal Structure Of Gna1946
pdb|3GXA|F Chain F, Crystal Structure Of Gna1946
Length = 275
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 191 NIRPIKLRGIALGNPLLDLDISVLGGEYLWSHGAISDETLMLE-----------KTVCND 239
NI+ ++L L D+D +V+ G Y S G E L E KT D
Sbjct: 169 NIKIVELEAAQLPRSRADVDFAVVNGNYAISSGMKLTEALFQEPSFAYVNWSAVKTADKD 228
Query: 240 SKYLREFVHGNN 251
S++L++ N
Sbjct: 229 SQWLKDVTEAYN 240
>pdb|2C31|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex
With The Cofactor Derivative Thiamin-2-Thiazolone
Diphosphate And Adenosine Diphosphate
pdb|2C31|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex
With The Cofactor Derivative Thiamin-2-Thiazolone
Diphosphate And Adenosine Diphosphate
pdb|2JI6|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp And Oxalyl-Coa
pdb|2JI6|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp And Oxalyl-Coa
pdb|2JI7|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase With Covalent
Reaction Intermediate
pdb|2JI7|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase With Covalent
Reaction Intermediate
pdb|2JI8|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Formyl-Coa
pdb|2JI8|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Formyl-Coa
pdb|2JI9|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp
pdb|2JI9|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp
pdb|2JIB|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Coenzyme-A
pdb|2JIB|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Coenzyme-A
Length = 568
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 97 NGKLLKNEYSWNLESNMLYVDSPIGVGYSYSNTSSDYKLWNDAATAEDNLRFIVNWFK 154
N L + + S M+ + +GV + + D L N+ A A DN R IV+ K
Sbjct: 358 NKAKLAGKMTAETPSGMMNYSNSLGVVRDFMLANPDISLVNEGANALDNTRMIVDMLK 415
>pdb|3MSW|A Chain A, Crystal Structure Of A Protein With Unknown Function
(Bf3112 Bacteroides Fragilis Nctc 9343 At 1.90 A
Resolution
Length = 145
Score = 29.3 bits (64), Expect = 4.9, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 99 KLLKNEYSWNLESNMLYVDSPIGVGYSYSNTSSDYKLWN 137
K +K+ Y+WN+ N +S + + TS +Y +WN
Sbjct: 51 KTVKSTYAWNIFKNTWETESRTVISRYETETSVEYSVWN 89
>pdb|1HQM|C Chain C, Crystal Structure Of Thermus Aquaticus Core Rna Polymerase-
Includes Complete Structure With Side-Chains (Except For
Disordered Regions)-Further Refined From Original
Deposition-Contains Additional Sequence Information
Length = 1119
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 254 QGCNQVFDRISEEVGADIDRQDLLSPFCIPISTSTEQFKPIDKHGKIHKTMARRGASTGD 313
QG D+ +EV A ++ L+SP P EQ K + GK+ R G
Sbjct: 930 QGEGFGVDKREKEVLARAEKLGLVSPGKSP----EEQLKELFDLGKVVLYDGRTGEPFEG 985
Query: 314 PCIYGRIFTYLNKPKVQKALHANTT 338
P + G++F V+ +HA +T
Sbjct: 986 PIVVGQMFIMKLYHMVEDKMHARST 1010
>pdb|1YNJ|C Chain C, Taq Rna Polymerase-Sorangicin Complex
pdb|1YNN|C Chain C, Taq Rna Polymerase-rifampicin Complex
pdb|2GHO|C Chain C, Recombinant Thermus Aquaticus Rna Polymerase For Structural
Studies
Length = 1119
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 254 QGCNQVFDRISEEVGADIDRQDLLSPFCIPISTSTEQFKPIDKHGKIHKTMARRGASTGD 313
QG D+ +EV A ++ L+SP P EQ K + GK+ R G
Sbjct: 930 QGEGFGVDKREKEVLARAEKLGLVSPGKSP----EEQLKELFDLGKVVLYDGRTGEPFEG 985
Query: 314 PCIYGRIFTYLNKPKVQKALHANTT 338
P + G++F V+ +HA +T
Sbjct: 986 PIVVGQMFIMKLYHMVEDKMHARST 1010
>pdb|1L9U|C Chain C, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|L Chain L, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9Z|C Chain C, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
Length = 1118
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 254 QGCNQVFDRISEEVGADIDRQDLLSPFCIPISTSTEQFKPIDKHGKIHKTMARRGASTGD 313
QG D+ +EV A ++ L+SP P EQ K + GK+ R G
Sbjct: 929 QGEGFGVDKREKEVLARAEKLGLVSPGKSP----EEQLKELFDLGKVVLYDGRTGEPFEG 984
Query: 314 PCIYGRIFTYLNKPKVQKALHANTT 338
P + G++F V+ +HA +T
Sbjct: 985 PIVVGQMFIMKLYHMVEDKMHARST 1009
>pdb|1I6V|C Chain C, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex
Length = 1118
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 254 QGCNQVFDRISEEVGADIDRQDLLSPFCIPISTSTEQFKPIDKHGKIHKTMARRGASTGD 313
QG D+ +EV A ++ L+SP P EQ K + GK+ R G
Sbjct: 929 QGEGFGVDKREKEVLARAEKLGLVSPGKSP----EEQLKELFDLGKVVLYDGRTGEPFEG 984
Query: 314 PCIYGRIFTYLNKPKVQKALHANTT 338
P + G++F V+ +HA +T
Sbjct: 985 PIVVGQMFIMKLYHMVEDKMHARST 1009
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,396,486
Number of Sequences: 62578
Number of extensions: 695170
Number of successful extensions: 1575
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1502
Number of HSP's gapped (non-prelim): 32
length of query: 477
length of database: 14,973,337
effective HSP length: 102
effective length of query: 375
effective length of database: 8,590,381
effective search space: 3221392875
effective search space used: 3221392875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)