BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039532
(268 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 97/167 (58%), Gaps = 16/167 (9%)
Query: 6 PPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHR 65
PPGFRFYPT+EEL+ YL K AG+ D +LQ+ I I++Y ++PW LP +
Sbjct: 18 PPGFRFYPTDEELMVQYLCRKAAGY--DFSLQL---IAEIDLYKFDPWVLPNKALF---- 68
Query: 66 DPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRA 125
++W+FF PR G RPNR+ +GYWKATG+ ++ + R VG K+ +VFY G+A
Sbjct: 69 GEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQR-VGIKKALVFYIGKA 127
Query: 126 PNGRKTEWKMNEYKAIDAEXXXXXXXXXXXXVRHEFSLCRVYKKSKS 172
P G KT W M+EY+ I+ ++ LCR+YKK S
Sbjct: 128 PKGTKTNWIMHEYRLIEPSRRNGSTKL------DDWVLCRIYKKQSS 168
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 97/167 (58%), Gaps = 16/167 (9%)
Query: 6 PPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHR 65
PPGFRFYPT+EEL+ YL K AG+ D +LQ+ I I++Y ++PW LP +
Sbjct: 21 PPGFRFYPTDEELMVQYLCRKAAGY--DFSLQL---IAEIDLYKFDPWVLPNKALF---- 71
Query: 66 DPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRA 125
++W+FF PR G RPNR+ +GYWKATG+ ++ + R VG K+ +VFY G+A
Sbjct: 72 GEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQR-VGIKKALVFYIGKA 130
Query: 126 PNGRKTEWKMNEYKAIDAEXXXXXXXXXXXXVRHEFSLCRVYKKSKS 172
P G KT W M+EY+ I+ ++ LCR+YKK S
Sbjct: 131 PKGTKTNWIMHEYRLIEPSRRNGSTKL------DDWVLCRIYKKQSS 171
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 93/167 (55%), Gaps = 11/167 (6%)
Query: 4 DYPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLC 63
+ PPGFRF+PT++ELV YL K AG R + II +++Y ++PWDLP+ +
Sbjct: 14 NLPPGFRFHPTDDELVEHYLCRKAAGQRLPVP-----IIAEVDLYKFDPWDLPERALF-- 66
Query: 64 HRDPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRG 123
+W+FF PR G RPNR GYWKATG+ V + R +G K+ +VFY G
Sbjct: 67 --GAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPV-APRGRTLGIKKALVFYAG 123
Query: 124 RAPNGRKTEWKMNEYKAIDAEXXXXXXXXXXXXVRHEFSLCRVYKKS 170
+AP G KT+W M+EY+ DA + ++ LCR+Y K
Sbjct: 124 KAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRL-DDWVLCRLYNKK 169
>pdb|3LUT|A Chain A, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 367
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 80 EARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRAPNGRKT 131
E+ G P RL+ + TGSPG++YS+ R KR + FYR +G +
Sbjct: 4 ESTTGSPARLS----LRQTGSPGMIYST--RYGSPKRQLQFYRNLGKSGLRV 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,215,264
Number of Sequences: 62578
Number of extensions: 309954
Number of successful extensions: 438
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 6
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)