Query 039532
Match_columns 268
No_of_seqs 148 out of 952
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 18:18:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039532.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039532hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 4.9E-54 1.7E-58 367.7 14.4 158 4-172 14-171 (174)
2 1ut7_A No apical meristem prot 100.0 1.5E-53 5.2E-58 364.1 12.2 154 4-173 16-169 (171)
3 1ldd_A APC2WHB, anaphase promo 35.5 20 0.00068 25.7 2.2 27 6-33 37-64 (74)
4 3nr5_A MAF1, repressor of RNA 13.1 49 0.0017 27.3 0.4 13 42-54 119-131 (164)
5 3dz1_A Dihydrodipicolinate syn 12.8 82 0.0028 27.9 1.9 18 5-24 109-126 (313)
6 1f6k_A N-acetylneuraminate lya 12.2 82 0.0028 27.6 1.7 18 5-23 106-123 (293)
7 2ehh_A DHDPS, dihydrodipicolin 12.1 83 0.0028 27.6 1.7 18 5-23 102-119 (294)
8 2ojp_A DHDPS, dihydrodipicolin 12.0 84 0.0029 27.5 1.7 18 5-23 103-120 (292)
9 3cpr_A Dihydrodipicolinate syn 11.9 85 0.0029 27.7 1.7 18 5-23 118-135 (304)
10 2yxg_A DHDPS, dihydrodipicolin 11.7 87 0.003 27.4 1.7 18 5-23 102-119 (289)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=4.9e-54 Score=367.66 Aligned_cols=158 Identities=42% Similarity=0.865 Sum_probs=130.3
Q ss_pred CCCCCceeCCChHHHHHHHHHHHHcCCCCCcccccCcceeecCCCCCCCCCcccchhcccCCCCceEEEeecCcccccCC
Q 039532 4 DYPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHRDPEQWFFFIPRQESEARG 83 (268)
Q Consensus 4 ~LPpGfRF~PTDeELV~~YL~~Ki~g~~~~l~~~~~~~I~~~DVy~~~Pw~Lp~~~~~~~~gd~~~wyFFt~r~~k~~~G 83 (268)
+|||||||+|||||||.|||++|+.|.+++ ..+|+++|||.+|||+||+.+ ..++. +||||+++.+++++|
T Consensus 14 ~LPpGfRF~PTDeELV~~YL~~K~~g~~~~-----~~~I~evDvy~~~Pw~Lp~~~---~~g~~-ewYFFs~r~~ky~~g 84 (174)
T 3ulx_A 14 NLPPGFRFHPTDDELVEHYLCRKAAGQRLP-----VPIIAEVDLYKFDPWDLPERA---LFGAR-EWYFFTPRDRKYPNG 84 (174)
T ss_dssp TCCTTCCCCCCHHHHHHHTHHHHHHTCCCS-----SSCCEECCGGGSCGGGSGGGC---SSCSS-EEEEEEECCC-----
T ss_pred CCCCcceeCCCHHHHHHHHHHHHhcCCCCC-----cCeeeecccccCCchhhhhhh---ccCCc-eEEEEeccccccCCC
Confidence 799999999999999999999999999886 579999999999999999853 34544 599999999999999
Q ss_pred CCCccccccceeeecCCCceeecCCCceEEEEEEEEEeecCCCCCCCcCcEEEEEEeCCcCcccCCCCCCCCCCCCceEE
Q 039532 84 GRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRAPNGRKTEWKMNEYKAIDAEASTSSSSATPPPVRHEFSL 163 (268)
Q Consensus 84 ~R~~R~t~~G~Wk~~G~~k~V~~~~g~viG~Krtf~Fy~g~~p~g~kT~W~M~EY~l~~~~~~~~~s~~~~~~~~~e~VL 163 (268)
.|++|+|++||||++|+++.|.+. |.+||+||+|+||.|++|++.+|+|+||||+|.......... .......++|||
T Consensus 85 ~R~nR~t~~G~WkatG~dk~I~~~-g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~-~~~~~~~~~wVl 162 (174)
T 3ulx_A 85 SRPNRAAGNGYWKATGADKPVAPR-GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGA-KKGSLRLDDWVL 162 (174)
T ss_dssp CCSCEEETTEEEEECSCCEEECCS-SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC------------CCSSEEE
T ss_pred CCceeecCCceEccCCCCcEEeeC-CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCccccc-ccCCCCCCCEEE
Confidence 999999999999999999999876 899999999999999999999999999999999874221111 111234689999
Q ss_pred EEEEeeCCC
Q 039532 164 CRVYKKSKS 172 (268)
Q Consensus 164 CrVy~k~~~ 172 (268)
||||+|++.
T Consensus 163 Crvf~K~~~ 171 (174)
T 3ulx_A 163 CRLYNKKNE 171 (174)
T ss_dssp EEEEESCC-
T ss_pred EEEEEcCCC
Confidence 999999865
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.5e-53 Score=364.06 Aligned_cols=154 Identities=42% Similarity=0.891 Sum_probs=126.3
Q ss_pred CCCCCceeCCChHHHHHHHHHHHHcCCCCCcccccCcceeecCCCCCCCCCcccchhcccCCCCceEEEeecCcccccCC
Q 039532 4 DYPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHRDPEQWFFFIPRQESEARG 83 (268)
Q Consensus 4 ~LPpGfRF~PTDeELV~~YL~~Ki~g~~~~l~~~~~~~I~~~DVy~~~Pw~Lp~~~~~~~~gd~~~wyFFt~r~~k~~~G 83 (268)
.|||||||+|||||||.|||++|+.|.+++ ..+|+++|||.+|||+||+.+ ..++. +||||+++.+++++|
T Consensus 16 ~lPpGfRF~PTDeELv~~YL~~K~~g~~~~-----~~~I~e~Diy~~~Pw~Lp~~~---~~g~~-ewyFFs~r~~k~~~g 86 (171)
T 1ut7_A 16 SLPPGFRFYPTDEELMVQYLCRKAAGYDFS-----LQLIAEIDLYKFDPWVLPNKA---LFGEK-EWYFFSPRDRKYPNG 86 (171)
T ss_dssp CCCTTEEECCCHHHHHHHTHHHHHTTCCCS-----SCCSEECCGGGSCGGGHHHHS---SSCSS-EEEEEEECCC-----
T ss_pred CCCCcceeCCChHHHHHHHHHHHhcCCCCC-----CCeEeecccccCChhHhhchh---hcCCc-cEEEEeccccccCCC
Confidence 799999999999999999999999999886 679999999999999999953 34544 599999999999999
Q ss_pred CCCccccccceeeecCCCceeecCCCceEEEEEEEEEeecCCCCCCCcCcEEEEEEeCCcCcccCCCCCCCCCCCCceEE
Q 039532 84 GRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRAPNGRKTEWKMNEYKAIDAEASTSSSSATPPPVRHEFSL 163 (268)
Q Consensus 84 ~R~~R~t~~G~Wk~~G~~k~V~~~~g~viG~Krtf~Fy~g~~p~g~kT~W~M~EY~l~~~~~~~~~s~~~~~~~~~e~VL 163 (268)
.|++|+|++||||++|+++.|.+. +.+||+||+|+||.|++|++.+|+|+||||+|..... .......++|||
T Consensus 87 ~R~~R~t~~G~Wk~tG~~k~I~~~-~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~------~~~~~~~~~~Vl 159 (171)
T 1ut7_A 87 SRPNRVAGSGYWKATGTDKIISTE-GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR------RNGSTKLDDWVL 159 (171)
T ss_dssp --CCEEETTEEEEEEEEEEEEEET-TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------------CCEEE
T ss_pred CcccccCCCCEEeccCCCceEEec-CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcc------ccCcccCCCEEE
Confidence 999999999999999999999975 7999999999999999999999999999999998631 112235689999
Q ss_pred EEEEeeCCCc
Q 039532 164 CRVYKKSKSL 173 (268)
Q Consensus 164 CrVy~k~~~~ 173 (268)
||||+|+.+.
T Consensus 160 Crv~~k~~~~ 169 (171)
T 1ut7_A 160 CRIYKKQSSA 169 (171)
T ss_dssp EEEEECC---
T ss_pred EEEEEcCCCC
Confidence 9999998653
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=35.55 E-value=20 Score=25.73 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=22.6
Q ss_pred CCCceeCC-ChHHHHHHHHHHHHcCCCCC
Q 039532 6 PPGFRFYP-TEEELVSFYLHNKLAGHRQD 33 (268)
Q Consensus 6 PpGfRF~P-TDeELV~~YL~~Ki~g~~~~ 33 (268)
|.|+.|.. |++||-. ||..|+..+.+.
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 67899998 9999887 799999887653
No 4
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=13.10 E-value=49 Score=27.27 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=10.3
Q ss_pred eeecCCCCCCCCC
Q 039532 42 IPVINIYDYNPWD 54 (268)
Q Consensus 42 I~~~DVy~~~Pw~ 54 (268)
+.++|||.+.|..
T Consensus 119 l~dC~IYsY~Pd~ 131 (164)
T 3nr5_A 119 LAECDIYSYNPDL 131 (164)
T ss_dssp GGGCEEEEECCCG
T ss_pred ccCCeEEEEcCCC
Confidence 4567999999983
No 5
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=12.79 E-value=82 Score=27.95 Aligned_cols=18 Identities=22% Similarity=0.587 Sum_probs=13.6
Q ss_pred CCCCceeCCChHHHHHHHHH
Q 039532 5 YPPGFRFYPTEEELVSFYLH 24 (268)
Q Consensus 5 LPpGfRF~PTDeELV~~YL~ 24 (268)
+||- |.||+++|+.||-.
T Consensus 109 ~~P~--~~~s~~~l~~~f~~ 126 (313)
T 3dz1_A 109 APPP--SLRTDEQITTYFRQ 126 (313)
T ss_dssp CCCT--TCCSHHHHHHHHHH
T ss_pred CCCC--CCCCHHHHHHHHHH
Confidence 5664 56999999998643
No 6
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=12.18 E-value=82 Score=27.59 Aligned_cols=18 Identities=17% Similarity=0.301 Sum_probs=14.0
Q ss_pred CCCCceeCCChHHHHHHHH
Q 039532 5 YPPGFRFYPTEEELVSFYL 23 (268)
Q Consensus 5 LPpGfRF~PTDeELV~~YL 23 (268)
+||-| |.||+++|+.||-
T Consensus 106 ~~P~y-~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 106 VTPFY-YKFSFPEIKHYYD 123 (293)
T ss_dssp ECCCS-SCCCHHHHHHHHH
T ss_pred CCCCC-CCCCHHHHHHHHH
Confidence 45644 7899999999874
No 7
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=12.11 E-value=83 Score=27.58 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=13.9
Q ss_pred CCCCceeCCChHHHHHHHH
Q 039532 5 YPPGFRFYPTEEELVSFYL 23 (268)
Q Consensus 5 LPpGfRF~PTDeELV~~YL 23 (268)
+||-| |.||+++|+.||-
T Consensus 102 ~~P~y-~~~s~~~l~~~f~ 119 (294)
T 2ehh_A 102 VVPYY-NKPTQRGLYEHFK 119 (294)
T ss_dssp ECCCS-SCCCHHHHHHHHH
T ss_pred CCCCC-CCCCHHHHHHHHH
Confidence 45544 7899999999874
No 8
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=11.99 E-value=84 Score=27.51 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=13.8
Q ss_pred CCCCceeCCChHHHHHHHH
Q 039532 5 YPPGFRFYPTEEELVSFYL 23 (268)
Q Consensus 5 LPpGfRF~PTDeELV~~YL 23 (268)
+||-| |.||+++|+.||-
T Consensus 103 ~~P~y-~~~s~~~l~~~f~ 120 (292)
T 2ojp_A 103 VTPYY-NRPSQEGLYQHFK 120 (292)
T ss_dssp ECCCS-SCCCHHHHHHHHH
T ss_pred CCCCC-CCCCHHHHHHHHH
Confidence 45644 7899999999863
No 9
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=11.92 E-value=85 Score=27.74 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=14.1
Q ss_pred CCCCceeCCChHHHHHHHH
Q 039532 5 YPPGFRFYPTEEELVSFYL 23 (268)
Q Consensus 5 LPpGfRF~PTDeELV~~YL 23 (268)
+|| |-|.||+++|+.||-
T Consensus 118 ~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 466 447899999999874
No 10
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=11.69 E-value=87 Score=27.36 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=13.9
Q ss_pred CCCCceeCCChHHHHHHHH
Q 039532 5 YPPGFRFYPTEEELVSFYL 23 (268)
Q Consensus 5 LPpGfRF~PTDeELV~~YL 23 (268)
+||-| |.||+++|+.||-
T Consensus 102 ~~P~y-~~~s~~~l~~~f~ 119 (289)
T 2yxg_A 102 ITPYY-NKPTQEGLRKHFG 119 (289)
T ss_dssp ECCCS-SCCCHHHHHHHHH
T ss_pred CCCCC-CCCCHHHHHHHHH
Confidence 45644 7899999999873
Done!