BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039534
         (380 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UGV|A Chain A, Crystal Structure Of An Enolase From Alpha Pretobacterium
           Bal199 (Efi Target Efi-501650) With Bound Mg
 pdb|3UGV|B Chain B, Crystal Structure Of An Enolase From Alpha Pretobacterium
           Bal199 (Efi Target Efi-501650) With Bound Mg
 pdb|3UGV|C Chain C, Crystal Structure Of An Enolase From Alpha Pretobacterium
           Bal199 (Efi Target Efi-501650) With Bound Mg
 pdb|3UGV|D Chain D, Crystal Structure Of An Enolase From Alpha Pretobacterium
           Bal199 (Efi Target Efi-501650) With Bound Mg
 pdb|3UGV|E Chain E, Crystal Structure Of An Enolase From Alpha Pretobacterium
           Bal199 (Efi Target Efi-501650) With Bound Mg
 pdb|3UGV|F Chain F, Crystal Structure Of An Enolase From Alpha Pretobacterium
           Bal199 (Efi Target Efi-501650) With Bound Mg
 pdb|3UGV|G Chain G, Crystal Structure Of An Enolase From Alpha Pretobacterium
           Bal199 (Efi Target Efi-501650) With Bound Mg
 pdb|3UGV|H Chain H, Crystal Structure Of An Enolase From Alpha Pretobacterium
           Bal199 (Efi Target Efi-501650) With Bound Mg
          Length = 390

 Score = 28.9 bits (63), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 23/34 (67%)

Query: 129 FVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNI 162
           FVG+ G   +AA GV ++V++ +++  N+PL  +
Sbjct: 117 FVGYAGLSMIAASGVDMAVWDALARAANMPLCTL 150


>pdb|3F5B|A Chain A, The Crystal Structure Of Aminoglycoside
           N(6')acetyltransferase From Legionella Pneumophila
           Subsp. Pneumophila Str. Philadelphia 1
          Length = 182

 Score = 27.7 bits (60), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 321 KLSD-NVLLMSPDIDGRRVVH-YLKSGGLLIGRTIA 354
           + SD  ++L++P+I   R VH Y K+G  +IG  IA
Sbjct: 123 QFSDTKIVLINPEISNERAVHVYKKAGFEIIGEFIA 158


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,845,271
Number of Sequences: 62578
Number of extensions: 234975
Number of successful extensions: 509
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 508
Number of HSP's gapped (non-prelim): 2
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)