Query 039534
Match_columns 380
No_of_seqs 261 out of 1910
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 10:40:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039534.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039534hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 1.2E-34 2.6E-39 287.0 31.0 260 98-378 12-279 (455)
2 PRK10367 DNA-damage-inducible 100.0 3.6E-31 7.8E-36 261.8 30.4 258 100-378 6-270 (441)
3 PRK00187 multidrug efflux prot 100.0 2.4E-30 5.3E-35 257.8 31.6 257 98-375 5-272 (464)
4 PRK10189 MATE family multidrug 100.0 2.4E-30 5.2E-35 258.4 31.0 258 100-375 26-295 (478)
5 PRK09575 vmrA multidrug efflux 100.0 4.9E-30 1.1E-34 255.0 31.2 261 97-377 6-272 (453)
6 PRK01766 multidrug efflux prot 100.0 1.5E-28 3.2E-33 244.7 30.5 258 97-374 6-274 (456)
7 TIGR00797 matE putative efflux 99.9 7.2E-23 1.6E-27 196.0 29.9 244 111-374 1-251 (342)
8 PRK00187 multidrug efflux prot 99.9 1.6E-22 3.5E-27 201.6 25.0 210 97-324 230-443 (464)
9 KOG1347 Uncharacterized membra 99.9 1.6E-22 3.6E-27 199.7 22.4 253 99-371 24-279 (473)
10 PRK01766 multidrug efflux prot 99.9 1.8E-21 3.8E-26 194.0 24.2 292 13-325 143-442 (456)
11 TIGR01695 mviN integral membra 99.9 9.3E-20 2E-24 183.6 29.3 289 13-327 136-430 (502)
12 PRK09575 vmrA multidrug efflux 99.9 3E-20 6.5E-25 184.9 24.3 207 98-325 229-436 (453)
13 PRK10189 MATE family multidrug 99.9 6.1E-20 1.3E-24 183.5 26.6 210 98-327 254-464 (478)
14 COG0534 NorM Na+-driven multid 99.9 4.1E-20 9E-25 183.4 24.4 211 96-327 234-445 (455)
15 TIGR02900 spore_V_B stage V sp 99.8 5.9E-18 1.3E-22 169.8 27.6 211 99-326 221-435 (488)
16 PF03023 MVIN: MviN-like prote 99.8 1.6E-16 3.4E-21 157.8 30.0 211 98-327 193-405 (451)
17 PF01554 MatE: MatE; InterPro 99.8 1.2E-18 2.7E-23 148.6 10.8 161 111-291 1-162 (162)
18 TIGR01695 mviN integral membra 99.8 1E-15 2.3E-20 154.1 30.5 249 105-373 2-257 (502)
19 PRK10367 DNA-damage-inducible 99.8 1.6E-16 3.5E-21 157.4 23.5 200 100-325 229-431 (441)
20 TIGR02900 spore_V_B stage V sp 99.8 7.3E-16 1.6E-20 154.7 27.6 240 106-368 2-254 (488)
21 PRK15099 O-antigen translocase 99.7 1.9E-15 4.1E-20 148.8 28.0 242 106-374 4-251 (416)
22 COG0728 MviN Uncharacterized m 99.7 4.2E-15 9E-20 146.7 30.1 232 100-352 229-462 (518)
23 PRK15099 O-antigen translocase 99.7 1.8E-14 3.8E-19 142.0 25.4 200 98-323 210-410 (416)
24 PRK10459 colanic acid exporter 99.7 6.4E-14 1.4E-18 141.0 28.7 202 99-325 203-405 (492)
25 COG2244 RfbX Membrane protein 99.7 4.3E-14 9.4E-19 141.7 25.8 187 99-310 209-396 (480)
26 PF03023 MVIN: MviN-like prote 99.4 9.4E-11 2E-15 116.6 27.9 224 133-375 5-234 (451)
27 COG0728 MviN Uncharacterized m 99.2 2.3E-08 5E-13 99.3 29.8 254 103-372 7-265 (518)
28 TIGR00797 matE putative efflux 99.2 2.3E-10 4.9E-15 109.5 14.5 212 13-248 124-341 (342)
29 PRK10459 colanic acid exporter 99.1 1.3E-07 2.8E-12 95.3 26.9 235 103-372 5-241 (492)
30 PF01943 Polysacc_synt: Polysa 99.1 3.4E-07 7.4E-12 84.0 27.5 234 107-371 3-237 (273)
31 PF14667 Polysacc_synt_C: Poly 98.8 7.4E-08 1.6E-12 80.5 13.2 81 245-327 2-82 (146)
32 PF13440 Polysacc_synt_3: Poly 98.8 1.2E-05 2.5E-10 73.0 26.9 215 122-374 3-219 (251)
33 KOG1347 Uncharacterized membra 98.7 2.8E-08 6.2E-13 98.8 5.8 204 99-322 243-449 (473)
34 PF07260 ANKH: Progressive ank 98.5 0.00039 8.4E-09 64.2 26.8 244 100-373 8-270 (345)
35 COG2244 RfbX Membrane protein 98.4 0.00017 3.7E-09 72.3 24.5 233 103-369 6-243 (480)
36 PF04506 Rft-1: Rft protein; 98.1 0.0003 6.5E-09 71.3 19.2 215 102-327 252-472 (549)
37 KOG2864 Nuclear division RFT1 98.1 0.00051 1.1E-08 66.2 18.5 223 87-327 223-451 (530)
38 PF01943 Polysacc_synt: Polysa 96.7 0.011 2.4E-07 53.9 9.2 72 98-177 200-272 (273)
39 PF13440 Polysacc_synt_3: Poly 94.3 0.35 7.5E-06 43.4 9.7 67 103-176 183-250 (251)
40 COG4267 Predicted membrane pro 93.9 6.4 0.00014 37.8 17.6 122 186-325 90-211 (467)
41 COG4267 Predicted membrane pro 87.3 29 0.00063 33.5 14.5 117 191-313 317-434 (467)
42 PF05975 EcsB: Bacterial ABC t 52.3 2.3E+02 0.005 27.5 16.1 38 192-229 89-126 (386)
43 PF04172 LrgB: LrgB-like famil 50.0 1.9E+02 0.0041 25.8 9.9 45 100-144 68-113 (215)
44 COG4536 CorB Putative Mg2+ and 35.0 2.5E+02 0.0053 27.4 8.4 99 108-234 59-158 (423)
45 PF07260 ANKH: Progressive ank 34.7 3.2E+02 0.007 26.0 9.0 39 96-134 228-267 (345)
46 PF01914 MarC: MarC family int 34.4 1.8E+02 0.0039 25.5 7.2 44 194-243 34-77 (203)
47 PRK10739 putative antibiotic t 33.0 2E+02 0.0044 25.1 7.2 45 194-244 34-78 (197)
48 PF03030 H_PPase: Inorganic H+ 29.4 5.3E+02 0.012 27.3 10.5 20 194-213 286-305 (682)
49 PRK11111 hypothetical protein; 26.3 2.6E+02 0.0056 24.8 6.8 44 194-243 40-83 (214)
50 TIGR00427 membrane protein, Ma 25.9 2.6E+02 0.0057 24.5 6.7 44 194-243 37-80 (201)
51 PF01102 Glycophorin_A: Glycop 25.2 1.1E+02 0.0023 24.7 3.7 8 319-326 85-92 (122)
52 PF04235 DUF418: Protein of un 25.0 4E+02 0.0086 22.0 13.0 26 194-219 11-36 (163)
53 KOG1305 Amino acid transporter 23.0 7.4E+02 0.016 24.4 12.9 28 192-219 224-251 (411)
54 COG1346 LrgB Putative effector 20.8 6.2E+02 0.013 22.8 9.4 92 100-231 81-173 (230)
55 PF04138 GtrA: GtrA-like prote 20.7 3.9E+02 0.0085 20.4 9.4 42 278-322 6-47 (117)
56 TIGR00927 2A1904 K+-dependent 20.6 7E+02 0.015 27.7 9.5 73 197-277 931-1004(1096)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=1.2e-34 Score=287.04 Aligned_cols=260 Identities=30% Similarity=0.451 Sum_probs=239.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhcc
Q 039534 98 FDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQG 177 (380)
Q Consensus 98 ~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~ 177 (380)
.++..|+++++++|++++++++.+++.+|++++||++++++||.++++++.++. .....++..+..++++|+
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~--------~~~~~gl~~g~~~liaq~ 83 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI--------IAIFIGLGTGTTVLVAQA 83 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH--------HHHHHHHHHhHHHHHHHH
Confidence 556789999999999999999999999999999999999999999999998887 444666777778899999
Q ss_pred CCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHH
Q 039534 178 SDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVI 257 (380)
Q Consensus 178 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l 257 (380)
+|++|+ +++++..++++.+.++++++..++.+.+.++++.+++.+ +|+.+.+.+|+++..++.|+..+
T Consensus 84 ~Ga~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~--~~v~~~a~~Yl~i~~~~~~~~~~ 151 (455)
T COG0534 84 IGAGDR----------KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAP--AEVLELAAEYLRIILLGAPFALL 151 (455)
T ss_pred HcCCch----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HhHHHHHHHHHHHHHHHHHHHHH
Confidence 999988 999999999999999999999999999999999999964 44999999999999999999999
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHh-hc-CChhHHHHHHHHHHHHHHHHHHHHHhcccc---c---c
Q 039534 258 ALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFF-FH-FGIGGAAIATVISEYLIAFILIWKLSDNVL---L---M 329 (380)
Q Consensus 258 ~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~-~~-~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~---~---~ 329 (380)
+.++.+++|+.||+|.+++++++++++|+++||+|+++ ++ +|+.|+++||.+++++.+++.+++++++++ . .
T Consensus 152 ~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (455)
T COG0534 152 SFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKK 231 (455)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhh
Confidence 99999999999999999999999999999999999999 57 999999999999999999999999877663 1 2
Q ss_pred CCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHccCchhhhhhh
Q 039534 330 SPDIDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGPIPWLVIR 378 (380)
Q Consensus 330 ~~~~~~~~~~~~l~~~~p~~~~~l~~~~~~~~~~~~~~~lG~~~~~~~~ 378 (380)
.++++++.++++++.|.|..++++++...+.+++.+.+++|+++ .+++
T Consensus 232 ~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~-lAa~ 279 (455)
T COG0534 232 LLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVA-LAAY 279 (455)
T ss_pred ccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHH-HHHH
Confidence 24788899999999999999999999999999999999999888 4444
No 2
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=3.6e-31 Score=261.84 Aligned_cols=258 Identities=24% Similarity=0.340 Sum_probs=226.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccC
Q 039534 100 ELGLEIWSIALPAALALAADPIASLIDTAFVGHL-GSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGS 178 (380)
Q Consensus 100 ~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~l-g~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~ 178 (380)
+..|+++++++|.++++++..+++.+|+.++|++ |++++||++++.++.++... ...++..+.+++++|++
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~--------~~~~~~~g~~~lvsq~~ 77 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFM--------LLLFLRMSTTGLTAQAF 77 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHh
Confidence 3469999999999999999999999999999998 66789999999988877632 23445556678999999
Q ss_pred CCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHH
Q 039534 179 DDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIA 258 (380)
Q Consensus 179 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~ 258 (380)
|++|+ +++++..++++.++++++++..++...+.++++.+++. |+|+.+.+.+|+++.+++.|+..++
T Consensus 78 Ga~~~----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~--~~~v~~~a~~Yl~i~~~~~~~~~~~ 145 (441)
T PRK10367 78 GAKNP----------QALARALVQPLLLALGAGALIALLRTPLIDLALHIVGG--SEAVLEQARRFLEIRWLSAPASLAN 145 (441)
T ss_pred CCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988 99999999999999999999998888899999999985 5679999999999999999999999
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhcccccc--C---CCC
Q 039534 259 LAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLM--S---PDI 333 (380)
Q Consensus 259 ~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~~~--~---~~~ 333 (380)
.++.+++||.||++.++++++++.++|+++|++|++++++|+.|+++||.+++++.+++.+++++++++.. + .+.
T Consensus 146 ~~~~~~lr~~G~~~~~~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 225 (441)
T PRK10367 146 LVLLGWLLGVQYARAPVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKT 225 (441)
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhh
Confidence 99999999999999999999999999999999999988999999999999999999888777765533211 1 122
Q ss_pred Ch-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHccCchhhhhhh
Q 039534 334 DG-RRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGPIPWLVIR 378 (380)
Q Consensus 334 ~~-~~~~~~l~~~~p~~~~~l~~~~~~~~~~~~~~~lG~~~~~~~~ 378 (380)
++ +.++++++.|.|...+...+..++.+.+.+++++|+++ .++.
T Consensus 226 ~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~a-lAa~ 270 (441)
T PRK10367 226 AWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDI-IAVN 270 (441)
T ss_pred hhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHH-HHHH
Confidence 22 35789999999999999999999999999999999987 4444
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=2.4e-30 Score=257.80 Aligned_cols=257 Identities=19% Similarity=0.162 Sum_probs=226.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhcc
Q 039534 98 FDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQG 177 (380)
Q Consensus 98 ~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~ 177 (380)
+++..|+++++++|.++++++..+...+|+++++++|++++||++++.++.++.. ....++..+.+++++|+
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~--------~~~~gl~~~~~~i~aq~ 76 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVS--------IFCVGVIAAVGTLVAIR 76 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 4456799999999999999999999999999999999999999999999877763 33456666778899999
Q ss_pred CCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHH
Q 039534 178 SDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVI 257 (380)
Q Consensus 178 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l 257 (380)
+|++|+ +++++.+++++.+.+.++++..++++ +.++++.++++ |+|+.+.+.+|+++.+++.|+..+
T Consensus 77 ~Ga~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~--~~ev~~~~~~Yl~i~~~~~~~~~l 143 (464)
T PRK00187 77 HGAGDI----------EGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQ--APQNVDAAMQFLHLLPFALPGYLS 143 (464)
T ss_pred hcCCCh----------hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 99999999999999999998877655 67999999985 577999999999999999999999
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhh----cCChhHHHHHHHHHHHHHHHHHHHHHhccccc--cC-
Q 039534 258 ALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFF----HFGIGGAAIATVISEYLIAFILIWKLSDNVLL--MS- 330 (380)
Q Consensus 258 ~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~----~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~~--~~- 330 (380)
...+++++|+.||+++++++++++.++|+++||+|+++. ++|+.|+++|+.+++++..++++++++++++. .+
T Consensus 144 ~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~ 223 (464)
T PRK00187 144 FMALRGFTSALGRAGPVMVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPL 223 (464)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhh
Confidence 999999999999999999999999999999999999763 58999999999999998887776666543321 11
Q ss_pred ----CCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHccCchhhh
Q 039534 331 ----PDIDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGPIPWL 375 (380)
Q Consensus 331 ----~~~~~~~~~~~l~~~~p~~~~~l~~~~~~~~~~~~~~~lG~~~~~ 375 (380)
.+.+++.++++++.++|..++.+.+...+.+.+.+++++|+++.+
T Consensus 224 ~~~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alA 272 (464)
T PRK00187 224 RKGLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLA 272 (464)
T ss_pred hccccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 245677899999999999999999999999999999999998854
No 4
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=2.4e-30 Score=258.36 Aligned_cols=258 Identities=21% Similarity=0.257 Sum_probs=229.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCC
Q 039534 100 ELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSD 179 (380)
Q Consensus 100 ~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g 179 (380)
+.+|+++++++|.++++++..+.+.+|+.+++++|++++||++++.++..+. .....+++.+.+++++|++|
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~--------~~~~~gl~~g~~~lvsq~~G 97 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI--------MAFFAAIDLGTTVVVAFSLG 97 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhc
Confidence 4489999999999999999999999999999999999999999999997765 33456677777889999999
Q ss_pred CCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHHH
Q 039534 180 DGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIAL 259 (380)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~~ 259 (380)
++|+ +++++..++++.+++.++++.+++.+.++++++.++.++.|+|+.+.+.+|+++..++.|+..++.
T Consensus 98 a~~~----------~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~ 167 (478)
T PRK10189 98 KRDR----------RRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITL 167 (478)
T ss_pred CCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 999999999999999999999998999999999999633468899999999999999999999999
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhh----cCChhHHHHHHHHHHHHHHHHHHHHHhcc-cccc--C--
Q 039534 260 AAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFF----HFGIGGAAIATVISEYLIAFILIWKLSDN-VLLM--S-- 330 (380)
Q Consensus 260 ~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~----~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~-~~~~--~-- 330 (380)
++.+++||.||++.++++++++.++|++++++|+++. ++|+.|+++|+.+++++..++.++++.++ ++.. +
T Consensus 168 ~~~~~lr~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (478)
T PRK10189 168 IGSGALRGAGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLK 247 (478)
T ss_pred HHHHHHHhcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeec
Confidence 9999999999999999999999999999999999863 79999999999999999988876666432 2111 1
Q ss_pred ---CCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHccCchhhh
Q 039534 331 ---PDIDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGPIPWL 375 (380)
Q Consensus 331 ---~~~~~~~~~~~l~~~~p~~~~~l~~~~~~~~~~~~~~~lG~~~~~ 375 (380)
.+.+++.++++++.|.|..++.+.+...+.+.+.+++++|+++.+
T Consensus 248 ~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~A 295 (478)
T PRK10189 248 SYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIA 295 (478)
T ss_pred cccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 124678899999999999999999999999999999999998743
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.98 E-value=4.9e-30 Score=255.04 Aligned_cols=261 Identities=16% Similarity=0.191 Sum_probs=231.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhh
Q 039534 97 KFDELGLEIWSIALPAALALAADPIASLIDTAFVGHL-GSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKS 175 (380)
Q Consensus 97 ~~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~l-g~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va 175 (380)
.+++..|+++++++|..++++...+++.+|+.++|++ |++++++++++.++.++.. ....++..+.+++++
T Consensus 6 ~~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~--------~~~~~~~~g~~~lvs 77 (453)
T PRK09575 6 MNQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIIL--------GIGLMVGMGTGSLLS 77 (453)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH--------HHHHHHhccHHHHHH
Confidence 4456779999999999999999999999999999995 9999999999999887763 234455556678999
Q ss_pred ccCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHH
Q 039534 176 QGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPI 255 (380)
Q Consensus 176 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~ 255 (380)
|++|++|+ |++++.+++++.+.+.++++++++.+.++++++.+++. |+++.+.+.+|+++.+++.|+.
T Consensus 78 q~~Ga~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~--~~~~~~~~~~yl~i~~~~~~~~ 145 (453)
T PRK09575 78 IKRGEGDL----------EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGA--EGRTLELALQYIQVLIWGCLFT 145 (453)
T ss_pred HHhcCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--ChhhHHHHHHHHHHHHHHHHHH
Confidence 99999988 99999999999999999999999999999999999985 5669999999999999999999
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhccccccC-----
Q 039534 256 VIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMS----- 330 (380)
Q Consensus 256 ~l~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~~~~----- 330 (380)
.++.....++|+.||++.+++.++++.++|+++|++|++.+++|+.|+++|+.+++++..++.+++++++++..+
T Consensus 146 ~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (453)
T PRK09575 146 LGAIALPFLLRNDESPNLATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKE 225 (453)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeecc
Confidence 999999999999999999999999999999999999999889999999999999999999988777765443322
Q ss_pred CCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHccCchhhhhh
Q 039534 331 PDIDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGPIPWLVI 377 (380)
Q Consensus 331 ~~~~~~~~~~~l~~~~p~~~~~l~~~~~~~~~~~~~~~lG~~~~~~~ 377 (380)
++++++.+++.++.|.|..++...+...+.+.+.+.+++|+....++
T Consensus 226 ~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa 272 (453)
T PRK09575 226 LRFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGA 272 (453)
T ss_pred CCcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 24567778999999999999999999999999999999997533443
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.97 E-value=1.5e-28 Score=244.75 Aligned_cols=258 Identities=19% Similarity=0.238 Sum_probs=228.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhc
Q 039534 97 KFDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQ 176 (380)
Q Consensus 97 ~~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~ 176 (380)
+.++.+|+++++++|.+++++..++.+.+|..+++++|++++++++++.++..+. .....++..+.++.++|
T Consensus 6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~--------~~~~~g~~~a~~~~vs~ 77 (456)
T PRK01766 6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV--------ILFGHGLLLALTPIVAQ 77 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 4456689999999999999999999999999999999999999999887765544 33355666777899999
Q ss_pred cCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHH
Q 039534 177 GSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIV 256 (380)
Q Consensus 177 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 256 (380)
++|++|+ +++++.+++++.+.+.++++++++++.+++++..+++. |+++.+.+..|+++.+++.|+..
T Consensus 78 ~~g~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~~~~~~yl~i~~~~~~~~~ 145 (456)
T PRK01766 78 LNGAGRR----------ERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNL--EPEVADIAVGYLHALLWGIPAYL 145 (456)
T ss_pred HhcCCCh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988 99999999999999999999999999999999999985 57789999999999999999999
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHh----hcCChhHHHHHHHHHHHHHHHHHHHHHhcccccc---
Q 039534 257 IALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFF----FHFGIGGAAIATVISEYLIAFILIWKLSDNVLLM--- 329 (380)
Q Consensus 257 l~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~----~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~~~--- 329 (380)
++.++++++|+.||++++++.++++.++|+++|++|+++ +.+|+.|+++|+.+++++..++.+++++++++..
T Consensus 146 ~~~~~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~ 225 (456)
T PRK01766 146 LYQVLRSFIDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFR 225 (456)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHH
Confidence 999999999999999999999999999999999999864 3689999999999999999998888876544311
Q ss_pred ---C-CCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHccCchhh
Q 039534 330 ---S-PDIDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGPIPW 374 (380)
Q Consensus 330 ---~-~~~~~~~~~~~l~~~~p~~~~~l~~~~~~~~~~~~~~~lG~~~~ 374 (380)
+ .+.+++.++++++.+.|...+.+.+...+.+.+.+++++|+++.
T Consensus 226 ~~~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~l 274 (456)
T PRK01766 226 LFKGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTV 274 (456)
T ss_pred hhccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHH
Confidence 1 23567789999999999999999999999999999999998773
No 7
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.92 E-value=7.2e-23 Score=195.97 Aligned_cols=244 Identities=36% Similarity=0.489 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCCCCCcccccchh
Q 039534 111 PAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDGSSQIDHGVE 190 (380)
Q Consensus 111 P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g~~~~~~~~~~~ 190 (380)
|.++++++..+...+|+.+++++|++++++++++.++.++. .....++..+..+.+++++|++|+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~--------~~~~~~i~~~~~~~~s~~~g~~~~------- 65 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL--------FSILMGLGTATTALVAQAVGAGNY------- 65 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH--------HHHHHHHHHhHHHHHHHHHCCCCh-------
Confidence 78899999999999999999999999999999998776655 334566777788999999998887
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCC
Q 039534 191 QQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMD 270 (380)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~l~g~g~ 270 (380)
+++++..++.+.+.+.++++.+++.+.+++++..+++. |++..+.+..|++++++..++..++....+++|+.||
T Consensus 66 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~ 140 (342)
T TIGR00797 66 ---QRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGA--DGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGD 140 (342)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999999999874 4568889999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-hhc-CChhHHHHHHHHHHHHHHHHHHHHHhccccc-----cCCCCChHHHHHHHH
Q 039534 271 TKTPLYAIGAGNLINAILDPILIF-FFH-FGIGGAAIATVISEYLIAFILIWKLSDNVLL-----MSPDIDGRRVVHYLK 343 (380)
Q Consensus 271 ~~~~~~~~i~~~~i~i~l~~~li~-~~~-~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~l~ 343 (380)
++.+++..+++.++++++++++++ .++ +|+.|+++++.+++++..++.+++.+|+++. .+.+++++.++++++
T Consensus 141 ~~~~~~~~i~~~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 220 (342)
T TIGR00797 141 TKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLK 220 (342)
T ss_pred chHHHHHHHHHHHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHH
Confidence 999999999999999999999987 567 8899999999999999998887777653221 124567788999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccCchhh
Q 039534 344 SGGLLIGRTIAVLLTMTLATSMAAREGPIPW 374 (380)
Q Consensus 344 ~~~p~~~~~l~~~~~~~~~~~~~~~lG~~~~ 374 (380)
.+.|.+...+..++...+.+.+++.+|+.+.
T Consensus 221 ~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v 251 (342)
T TIGR00797 221 LGLPIAFRVILESLSFALLALLVARLGSIAL 251 (342)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 9999999999999999999999999997653
No 8
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.91 E-value=1.6e-22 Score=201.65 Aligned_cols=210 Identities=18% Similarity=0.125 Sum_probs=189.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhc
Q 039534 97 KFDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQ 176 (380)
Q Consensus 97 ~~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~ 176 (380)
.+++.+|+++++++|..++++++.....+|..+++++|++++|+++++.++..+. .....+++.+.+++++|
T Consensus 230 ~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~--------~~~~~gi~~a~~~lvgq 301 (464)
T PRK00187 230 PSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA--------FMVPVGLSYAVTMRVGQ 301 (464)
T ss_pred CCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999999999999999988876 33456677777889999
Q ss_pred cCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCc---ccHHHHHHHHHHHHHhHH
Q 039534 177 GSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADS---PMRVPAENFLNLRAFGAP 253 (380)
Q Consensus 177 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~a~~~l~~~~~~~~ 253 (380)
++|++|+ +++++..++++.+++.++++++++++.+++++..++..++|+ |+.+.+..|+++.+++.+
T Consensus 302 ~~Ga~~~----------~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~ 371 (464)
T PRK00187 302 HYGAGRL----------LEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFEL 371 (464)
T ss_pred HHcCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 9999998 999999999999999999999999999999999999632233 688999999999999999
Q ss_pred HHHHHHHHHHHHhccCCchHHHHHHHHHH-HHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhc
Q 039534 254 PIVIALAAQGAFRGFMDTKTPLYAIGAGN-LINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSD 324 (380)
Q Consensus 254 ~~~l~~~~~~~l~g~g~~~~~~~~~i~~~-~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~ 324 (380)
+.+++.++.+++||.||++.++++++++. ++|+++++++++.+++|+.|+++++.+++++..++.....+.
T Consensus 372 ~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 372 FDGTQTIAMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred hhHHHHHHHHhHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 999999999998888999999999999999988777655543
No 9
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.90 E-value=1.6e-22 Score=199.71 Aligned_cols=253 Identities=21% Similarity=0.160 Sum_probs=231.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccC
Q 039534 99 DELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGS 178 (380)
Q Consensus 99 ~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~ 178 (380)
+.+.|++++++.|.++..+.++..+.+++.++||+|+.++++.+++....+... .++..++.++++++.+|++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~-------~s~~~gl~~aletlcgQa~ 96 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITG-------VSILLGLQLALDTLCGQAF 96 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccc-------hHHhhccchhhhcchHhhh
Confidence 455699999999999999999999999999999999999999999999988854 5667777888889999999
Q ss_pred CCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHH
Q 039534 179 DDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIA 258 (380)
Q Consensus 179 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~ 258 (380)
|++++ +......+++..+....++|++. +|.+.++|+..++++ |++...+..|.+++.++.+.+...
T Consensus 97 ga~~~----------~~lg~~lqrs~~~l~~~~~~~~~-l~~~~~~il~~lgq~--~~i~~~a~~y~~~~ip~~~a~~~~ 163 (473)
T KOG1347|consen 97 GAKKF----------TALGVYLQRSGIVLLVQGLPISL-LILNSEPILLLLGQD--PDISRDAGSYAFMLIPGLFSYAVS 163 (473)
T ss_pred ccccc----------chhhHHHHHHHHHHHHHHHHHHH-HHHccHHHHHHhCCC--hhHHHHHhhhHhhhcchhhhhHHH
Confidence 99999 99999999999999999999999 788999999999975 669999999999999999999999
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhccccccC---CCCCh
Q 039534 259 LAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMS---PDIDG 335 (380)
Q Consensus 259 ~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~~~~---~~~~~ 335 (380)
..+..++|+|+++.+..++..++.++|+.++|++++.+++|+.|++++..+++++.......|+........ ..++.
T Consensus 164 ~~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~~ 243 (473)
T KOG1347|consen 164 FPLAKFLQAQSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGEF 243 (473)
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHhh
Confidence 999999999999999999999999999999999999999999999999999999999999888865442111 12237
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHccCc
Q 039534 336 RRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGP 371 (380)
Q Consensus 336 ~~~~~~l~~~~p~~~~~l~~~~~~~~~~~~~~~lG~ 371 (380)
++++++++.++|...+.+.|++.++++..+.|.+|.
T Consensus 244 ~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~n 279 (473)
T KOG1347|consen 244 DSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGN 279 (473)
T ss_pred hhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCC
Confidence 789999999999999999999999999999999997
No 10
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.89 E-value=1.8e-21 Score=193.95 Aligned_cols=292 Identities=15% Similarity=0.096 Sum_probs=223.6
Q ss_pred hhhhccCCCcccccCCccccCCCCCcccccccccccccccccCCCCCCCCCCCccCCCCCCCCcccccCc---hhhhhH-
Q 039534 13 LCSMHSSSSSYYYNSKQTKSSSTPGKFRIFNRRNLTCSARLKSAPHKKKTASTSLQTSPPDPSRFSLSGS---FSLINI- 88 (380)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~- 88 (380)
+..+..+.+++..+.++++.|...+......+....+.+.....+.+. -...........+........ ..+.+.
T Consensus 143 ~~~~~~~~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~-~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~ 221 (456)
T PRK01766 143 AYLLYQVLRSFIDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPE-LGGVGCGVATAIVYWVMFLAMLIYIKRARRF 221 (456)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcc-cccccHHHHHHHHHHHHHHHHHHHHHhChhh
Confidence 345667778899999999999999888876655544332211000000 001111000000000000000 011110
Q ss_pred --HHHhhc-ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 039534 89 --IARLSD-GFKFDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTS 165 (380)
Q Consensus 89 --~~~~~~-~~~~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~ 165 (380)
.+..++ ...+++.+|+++++++|..++.+.+.+...++..+++++|++++|+++++.++.++. .....+
T Consensus 222 ~~~~~~~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~--------~~~~~g 293 (456)
T PRK01766 222 RDFRLFKGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLL--------FMLPLS 293 (456)
T ss_pred hHHHhhccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH--------HHHHHH
Confidence 000111 123456789999999999999999999999999999999999999999999987776 233556
Q ss_pred hhhhhHHHhhccCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHH
Q 039534 166 FVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFL 245 (380)
Q Consensus 166 l~~~~~~~va~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l 245 (380)
++.+.++.++|++|++|+ +++++..+.++.+++.++++++++++.+++++..+|. +|+|+.+.+..|+
T Consensus 294 l~~a~~~~v~~~~Ga~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~--~d~~v~~~~~~~l 361 (456)
T PRK01766 294 LAMALTIRVGFELGAGRT----------LDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYT--DDPEVVALASHLL 361 (456)
T ss_pred HHHHHHHHHHHHhcCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 666677899999999998 9999999999999999999999999999999999997 4688999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHhccCCchHHHHHHHHHH-HHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhc
Q 039534 246 NLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGN-LINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSD 324 (380)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~l~g~g~~~~~~~~~i~~~-~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~ 324 (380)
++.++..++.+++.+..+++||.||++.++++++++. ++++++.+++.+.+++|+.|+++|+.+++++..++.++++++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
T PRK01766 362 LFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRK 441 (456)
T ss_pred HHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988 789999999988778999999999999999999988877765
Q ss_pred c
Q 039534 325 N 325 (380)
Q Consensus 325 ~ 325 (380)
.
T Consensus 442 ~ 442 (456)
T PRK01766 442 L 442 (456)
T ss_pred H
Confidence 4
No 11
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.87 E-value=9.3e-20 Score=183.56 Aligned_cols=289 Identities=18% Similarity=0.100 Sum_probs=217.9
Q ss_pred hhhhccCCCcccccCCccccCCCCCcccccccccccccccccCCCCCCCCCCCccCCCCCCCCcccccC---chhhhhHH
Q 039534 13 LCSMHSSSSSYYYNSKQTKSSSTPGKFRIFNRRNLTCSARLKSAPHKKKTASTSLQTSPPDPSRFSLSG---SFSLINII 89 (380)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 89 (380)
+.++.+..+++..+.++.+.|+..+.................. +..... ..-+.-.+....... ...+..
T Consensus 136 ~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~---g~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~-- 208 (502)
T TIGR01695 136 LISLAAVFGGILNARKRFFIPSFSPILFNIGVILSLLFFDWNY---GQYSLA--LAIGVLIGGVAQLLIQLPFLRKAG-- 208 (502)
T ss_pred HHHHHHHHHHHHhccCeeHHHHHHHHHHHHHHHHHHHHHHccc---chHHHH--HHHHHHHHHHHHHHHHHHHHHHCC--
Confidence 4566777788899999999998888877655433221111100 000000 000000000000000 000000
Q ss_pred HHhhccc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 039534 90 ARLSDGF-KFDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVA 168 (380)
Q Consensus 90 ~~~~~~~-~~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~ 168 (380)
.+.+... .+++..|+++++++|..++++...+...+|+.+.+.+|.+++++++.+.++.++.. .....++..
T Consensus 209 ~~~~~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~-------~~~~~~i~~ 281 (502)
T TIGR01695 209 FLLKPRFNFRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPL-------GIFGISLST 281 (502)
T ss_pred CcccCcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 0111111 24567899999999999999999999999999977789889999999888877653 223556777
Q ss_pred hhHHHhhccCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCC--CcccHHHHHHHHH
Q 039534 169 EEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPA--DSPMRVPAENFLN 246 (380)
Q Consensus 169 ~~~~~va~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~a~~~l~ 246 (380)
...|.+++++|++|. +++++.+++++.....+++|++++++.+++++..++++++ |+|....+..+++
T Consensus 282 ~~~P~~s~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~ 351 (502)
T TIGR01695 282 VLLPKLSRHASEGNW----------NELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILA 351 (502)
T ss_pred HHHHHHHHHHhcCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 789999999988887 9999999999999999999999999999999999997643 5667888999999
Q ss_pred HHHHhHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhccc
Q 039534 247 LRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNV 326 (380)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~ 326 (380)
+++++.++..++..+..++++.||++.+++.++++.++|++++++++.. +|+.|+++|+.+++.+..++..++++|+.
T Consensus 352 ~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~~ 429 (502)
T TIGR01695 352 AYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRRL 429 (502)
T ss_pred HHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999764 89999999999999999998888887664
Q ss_pred c
Q 039534 327 L 327 (380)
Q Consensus 327 ~ 327 (380)
+
T Consensus 430 ~ 430 (502)
T TIGR01695 430 K 430 (502)
T ss_pred C
Confidence 3
No 12
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.87 E-value=3e-20 Score=184.88 Aligned_cols=207 Identities=14% Similarity=0.091 Sum_probs=185.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCh-hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhc
Q 039534 98 FDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGS-VELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQ 176 (380)
Q Consensus 98 ~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~-~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~ 176 (380)
+++..|+++++++|..++.....+...+...+++++|+ +++|+++++.++.++. .....+++.+.+++++|
T Consensus 229 ~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~--------~~~~~gi~~a~~~lvg~ 300 (453)
T PRK09575 229 NWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLY--------YLVAEGIAEGMQPPVSY 300 (453)
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH--------HHHHHHHHHhhHHHHHH
Confidence 45678999999999999999999999999999999996 5899999999888776 33467777778999999
Q ss_pred cCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHH
Q 039534 177 GSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIV 256 (380)
Q Consensus 177 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 256 (380)
++|++|+ |++++..++++.+++..+++.+++++.+++++..+|.. +|+|+.+.+..|+++.+++.|+..
T Consensus 301 ~~Ga~~~----------~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~-~~~~v~~~~~~~l~i~~~~~~~~~ 369 (453)
T PRK09575 301 YFGARQY----------DNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNS-GDSELIAETIVGIRLHLFAMFLDG 369 (453)
T ss_pred HhcCCCh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcC-CChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 99999999999999999999999999999999999974 357799999999999999999999
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhcc
Q 039534 257 IALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDN 325 (380)
Q Consensus 257 l~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~ 325 (380)
++.+..+++||.||++.++++++...++++++.+++... +|+.|+++|+.+++++..++.+++++++
T Consensus 370 ~~~~~~~~~~~~g~~~~~~~~~~~~~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~~ 436 (453)
T PRK09575 370 FLVLASAYFMAVNQGGKALFISIGNMLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWRD 436 (453)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHhHHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888899988877543 8999999999999999988887766554
No 13
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.87 E-value=6.1e-20 Score=183.53 Aligned_cols=210 Identities=14% Similarity=0.153 Sum_probs=190.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhcc
Q 039534 98 FDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQG 177 (380)
Q Consensus 98 ~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~ 177 (380)
+.+.+|+++++++|..++.+...+...+-+.+++++|++++||++++.++.++. .....+++.+.+++++|+
T Consensus 254 ~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~--------~~~~~gi~~A~~~lvg~~ 325 (478)
T PRK10189 254 NFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALI--------NLPGNALGSASTIITGTR 325 (478)
T ss_pred CHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 446789999999999999999999999999999999999999999999998776 334667777889999999
Q ss_pred CCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHH
Q 039534 178 SDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVI 257 (380)
Q Consensus 178 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l 257 (380)
+|++|. +++++..+.+..+++..++.++++++.+++++..+|. +|+|+.+.+..++++.++..|+.++
T Consensus 326 ~Ga~~~----------~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt--~d~~v~~~~~~~l~~~~~~~~~~~~ 393 (478)
T PRK10189 326 LGKGQI----------AQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYT--QDPDVKHVVKILIWLNALFMPIWAA 393 (478)
T ss_pred hCCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 9999999999999999999999999999999999997 4688999999999999999999999
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHH-HHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhcccc
Q 039534 258 ALAAQGAFRGFMDTKTPLYAIGAGN-LINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVL 327 (380)
Q Consensus 258 ~~~~~~~l~g~g~~~~~~~~~i~~~-~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~ 327 (380)
+.+..+++||.||++.++++++++. ++.+++.+++....++|+.|.+++..+++.+..++.++.+++.++
T Consensus 394 ~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W 464 (478)
T PRK10189 394 SWVLPAGLKGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRW 464 (478)
T ss_pred HHHHHhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 9999999999999999999999886 678888888877678999999999999999999888877766544
No 14
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.86 E-value=4.1e-20 Score=183.37 Aligned_cols=211 Identities=24% Similarity=0.266 Sum_probs=194.0
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhh
Q 039534 96 FKFDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKS 175 (380)
Q Consensus 96 ~~~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va 175 (380)
..+++..|+++++++|..++++.+.....+-+.+++++|++.+||++++.++..+. .....+++.+.+++++
T Consensus 234 ~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~--------~~~~~gi~~a~~~lvG 305 (455)
T COG0534 234 KPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFI--------FMPPFGIAQAVTILVG 305 (455)
T ss_pred CCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 45668899999999999999999999999999999999999999999999999887 4446777778899999
Q ss_pred ccCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHH
Q 039534 176 QGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPI 255 (380)
Q Consensus 176 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~ 255 (380)
|++|++|+ +++++..+.+..+++.+++..+++++++++++..+|.. |+|+.+.+..++++.++..++.
T Consensus 306 ~~~Ga~~~----------~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~--~~~v~~~~~~~l~i~~~~~~~~ 373 (455)
T COG0534 306 QNLGAGNY----------KRARRAARLALKLSLLIALLIALLLLLFREPIISLFTT--DPEVIALAVILLLIAALFQPFD 373 (455)
T ss_pred HHhCCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999999999999999999985 4889999999999999999999
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHH-HHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhcccc
Q 039534 256 VIALAAQGAFRGFMDTKTPLYAIGAGN-LINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVL 327 (380)
Q Consensus 256 ~l~~~~~~~l~g~g~~~~~~~~~i~~~-~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~ 327 (380)
+.+.+..+++||.||++.++++++++. ++.+++.+++.+.. +|..|.+++..+++.+..++..++++++++
T Consensus 374 ~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~ 445 (455)
T COG0534 374 GIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRW 445 (455)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999987 56788777777655 999999999999999999999888876544
No 15
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.82 E-value=5.9e-18 Score=169.83 Aligned_cols=211 Identities=18% Similarity=0.224 Sum_probs=175.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----ChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHh
Q 039534 99 DELGLEIWSIALPAALALAADPIASLIDTAFVGHL----GSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVK 174 (380)
Q Consensus 99 ~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~l----g~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~v 174 (380)
++.+|+++++++|..++++...+.+.+|+.+++++ |.....+.+..+...++...+..+| ..+..++..+..|..
T Consensus 221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p~~ 299 (488)
T TIGR02900 221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVPDI 299 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999983 2211222233222222333333344 455777888889999
Q ss_pred hccCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHH
Q 039534 175 SQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPP 254 (380)
Q Consensus 175 a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 254 (380)
++++|++|+ ++.++.+++...+...+++|.++++..+++++..+++.++ .+..+++++++..++
T Consensus 300 s~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~------~~~~~l~i~~~~~~~ 363 (488)
T TIGR02900 300 SEAMAKKNY----------SSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP------DAGNFIRVLAPSFPF 363 (488)
T ss_pred HHHHHcCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------chHHHHHHHHHHHHH
Confidence 999888877 8999999999999999999999999999999999997432 378899999999999
Q ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhccc
Q 039534 255 IVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNV 326 (380)
Q Consensus 255 ~~l~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~ 326 (380)
..++.....++++.||+|.+++.++++.++|++++++++..+.+|+.|+++|+.+++.+..++..++.+|..
T Consensus 364 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~~ 435 (488)
T TIGR02900 364 LYFSAPLQSILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKNI 435 (488)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988545699999999999999999999888887643
No 16
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.79 E-value=1.6e-16 Score=157.81 Aligned_cols=211 Identities=22% Similarity=0.258 Sum_probs=187.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhcc
Q 039534 98 FDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQG 177 (380)
Q Consensus 98 ~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~ 177 (380)
.++..|++++...|..+......+...+|+.+.+.+++.++++++.+.++.++...++ ..++.+...|..++.
T Consensus 193 ~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~-------~~~i~tv~~P~ls~~ 265 (451)
T PF03023_consen 193 RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIF-------AVSISTVVFPKLSRL 265 (451)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 3445899999999999999999999999999999999999999999999999876444 445555556777776
Q ss_pred CCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCC--CCCcccHHHHHHHHHHHHHhHHHH
Q 039534 178 SDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGI--PADSPMRVPAENFLNLRAFGAPPI 255 (380)
Q Consensus 178 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~a~~~l~~~~~~~~~~ 255 (380)
..++|. ++.++.+++.+...+++.+|++++++.+++++..++++ .-|.|-.+....++++++++.|+.
T Consensus 266 ~~~~d~----------~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~ 335 (451)
T PF03023_consen 266 AAEGDW----------EEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFY 335 (451)
T ss_pred HhcCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 555555 99999999999999999999999999999999999863 345566788999999999999999
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhcccc
Q 039534 256 VIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVL 327 (380)
Q Consensus 256 ~l~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~ 327 (380)
.++..+.+.+.++||+|.|+++++++.++|++++++++.. +|..|.++|+.++.++.+++.+++++|+.+
T Consensus 336 ~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 336 ALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999888775 899999999999999999999888877654
No 17
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.78 E-value=1.2e-18 Score=148.59 Aligned_cols=161 Identities=28% Similarity=0.391 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCCCCCcccccchh
Q 039534 111 PAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDGSSQIDHGVE 190 (380)
Q Consensus 111 P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g~~~~~~~~~~~ 190 (380)
|..+++++..+.+.+|+.+++++|++++++++++..+.++.. ....+++.+.++.++|++|++|+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~--------~~~~g~~~a~~~~~s~~~G~~~~------- 65 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILF--------MLIFGLATALQILISQNIGAGDY------- 65 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHH--------HHHHHHHHHHHHHHCCCCCSSST-------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh--------hhcccccccccceeecccccccc-------
Confidence 899999999999999999999999999999999999998874 34677777889999999999998
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCC
Q 039534 191 QQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMD 270 (380)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~l~g~g~ 270 (380)
+++++.+++++.+.+.++++.+++++.+.+++..+++. |+++.+.+.+|+++..+..|+..+.....+++||.||
T Consensus 66 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 140 (162)
T PF01554_consen 66 ---KRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGN--DPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGR 140 (162)
T ss_dssp ---TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSS--TTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCST
T ss_pred ---cccccccccccccchhcccchhhhhhhHHHHHHHHhhh--hHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCc
Confidence 99999999999999999999999999999999999985 4669999999999999999999999999999999999
Q ss_pred chHHHHHHHHHH-HHHHHHHHH
Q 039534 271 TKTPLYAIGAGN-LINAILDPI 291 (380)
Q Consensus 271 ~~~~~~~~i~~~-~i~i~l~~~ 291 (380)
++.+++.++++. ++|++++|+
T Consensus 141 ~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 141 TKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHhC
Confidence 999999999999 999999885
No 18
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.76 E-value=1e-15 Score=154.15 Aligned_cols=249 Identities=14% Similarity=0.073 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc-cChhhH-HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCCCCC
Q 039534 105 IWSIALPAALALAADPIASLIDTAFVGH-LGSVEL-AAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDGS 182 (380)
Q Consensus 105 il~~a~P~~~~~l~~~l~~~id~~~ig~-lg~~~l-aa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g~~~ 182 (380)
++|-+.-.++.++...+++.+|..++++ +|+++. ++++++.++.++...++. ..++..+..+...+ +++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~------~~g~~~a~i~~~~~---~~~ 72 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFA------EGAFNSAFVPVFTK---AKK 72 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHH---HHh
Confidence 4567778889999999999999999999 899999 799999988877643322 11223322333333 332
Q ss_pred cccccchhhhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHHHHH
Q 039534 183 SQIDHGVEQQGKKLLPSISTSLALAAG-IGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAA 261 (380)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~~~~ 261 (380)
. + |+.++.+..+...... .++...++.+++++++..++....|++..+.+..|+++++++.|+..+....
T Consensus 73 ~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~ 143 (502)
T TIGR01695 73 K--------E-KEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVF 143 (502)
T ss_pred h--------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1 4666666666665554 4444567788899999998842234557788999999999999999999999
Q ss_pred HHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHH--HHHHHHHHHHHHHHHHHHhcccccc--CCCCChHH
Q 039534 262 QGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAA--IATVISEYLIAFILIWKLSDNVLLM--SPDIDGRR 337 (380)
Q Consensus 262 ~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa--~a~~is~~~~~~l~~~~~~~~~~~~--~~~~~~~~ 337 (380)
++++|+.||.+.+++.+++..++++...+++ ..++|..|++ +++.+++.+..++.+++++|++... +++++++.
T Consensus 144 ~~~l~~~~~~~~~~~~~i~~~i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (502)
T TIGR01695 144 GGILNARKRFFIPSFSPILFNIGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKPRFNFRDPG 221 (502)
T ss_pred HHHHhccCeeHHHHHHHHHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCcCCCCChh
Confidence 9999999999999999999988887743333 3469999998 9999999999888877766543222 23345678
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHccCchh
Q 039534 338 VVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGPIP 373 (380)
Q Consensus 338 ~~~~l~~~~p~~~~~l~~~~~~~~~~~~~~~lG~~~ 373 (380)
+++.++.+.|..+..+.......+-..+.+.+|+.+
T Consensus 222 ~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~ 257 (502)
T TIGR01695 222 LKRFLKLFLPTTLGSSASQITLLINTALASFLEIGS 257 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 999999999999999999998888888877777755
No 19
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.76 E-value=1.6e-16 Score=157.43 Aligned_cols=200 Identities=13% Similarity=0.090 Sum_probs=167.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCC
Q 039534 100 ELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSD 179 (380)
Q Consensus 100 ~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g 179 (380)
+..|++++++.|..++++.......+-+.+++++|++++||++++.++..+. .....+++.+.+++++|++|
T Consensus 229 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~--------~~~~~gl~~a~~~lvg~~~G 300 (441)
T PRK10367 229 GNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFT--------AYALDGFAYAVEAHSGQAYG 300 (441)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH--------HHHHHhHHHHHHHHHHHHHc
Confidence 4679999999999999999999999999999999999999999999998887 34467777788999999999
Q ss_pred CCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHHH
Q 039534 180 DGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIAL 259 (380)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~~ 259 (380)
++|. +++++..++++.+++..++.++++++.+++++..+|. +|+|+.+.+..++++.++..+......
T Consensus 301 a~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt--~d~~v~~~~~~~l~i~~~~~~~~~~~~ 368 (441)
T PRK10367 301 ARDG----------SQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLT--SLPQIQQLADRYLIWQVILPLVGVWCY 368 (441)
T ss_pred CCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999999999999999999999999997 478899999999999987633332444
Q ss_pred HHHHHHhccC---CchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhcc
Q 039534 260 AAQGAFRGFM---DTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDN 325 (380)
Q Consensus 260 ~~~~~l~g~g---~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~ 325 (380)
...++++|.+ |++.++++++++..+ .++.. +.+|+.|.++|..+++.+..++..+++++.
T Consensus 369 ~~~~~~~g~lrg~dt~~~~~~~~~~~~~----~~~~~--~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~ 431 (441)
T PRK10367 369 LLDGMFIGATRAAEMRNSMAVAAAGFAL----TLLTL--PWLGNHGLWLALTVFLALRGLSLAAIWRRH 431 (441)
T ss_pred HHHHHhhCccchHHHHHHHHHHHHHHHH----HHHHH--HHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555 599999999887543 11122 258999999999999999998887766544
No 20
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.75 E-value=7.3e-16 Score=154.67 Aligned_cols=240 Identities=14% Similarity=0.156 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc-cChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCCCCCcc
Q 039534 106 WSIALPAALALAADPIASLIDTAFVGH-LGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDGSSQ 184 (380)
Q Consensus 106 l~~a~P~~~~~l~~~l~~~id~~~ig~-lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g~~~~~ 184 (380)
+|-+.|.+++++...+.+.+|..+++| +|+++.++++.+..+.++...+.. .++..+....++|..|++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~-------~Gl~~a~~~~is~~~~~~~~- 73 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTT-------GGLPVAISKFVAEASAKNDR- 73 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHh-------CCcHHHHHHHHHHHHhccch-
Confidence 366899999999999999999999999 799999999999888777654332 23444556688887777666
Q ss_pred cccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 039534 185 IDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGA 264 (380)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~ 264 (380)
+++++.+..++.+.+..+++++++++.+++++...++++++ ...+++++++..|+..+....+.+
T Consensus 74 ---------~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~ 138 (488)
T TIGR02900 74 ---------KNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDER------SLYSLLVICPAMPFIALSSVLKGY 138 (488)
T ss_pred ---------hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChh------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999899999999887764322 345788999999999999999999
Q ss_pred HhccCCchHHHHHHHHHHHHHHHHHHHHHHh-----hcCChhHHHHHHHHHHHHHHHHHHHHHhccccc-cC------CC
Q 039534 265 FRGFMDTKTPLYAIGAGNLINAILDPILIFF-----FHFGIGGAAIATVISEYLIAFILIWKLSDNVLL-MS------PD 332 (380)
Q Consensus 265 l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~-----~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~~-~~------~~ 332 (380)
+|+.+|.+..++.++++.++|+.++..++.. ..+|+.|+++++.+++++..++.+++.+|+++. .+ .+
T Consensus 139 l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (488)
T TIGR02900 139 FQGISNMKPPAYIQVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKS 218 (488)
T ss_pred HhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCc
Confidence 9999999999999999999998877666542 246788999999999999998877665443221 11 12
Q ss_pred CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Q 039534 333 IDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAR 368 (380)
Q Consensus 333 ~~~~~~~~~l~~~~p~~~~~l~~~~~~~~~~~~~~~ 368 (380)
.+++.+++.++.+.|..++.+.......+-+.+.++
T Consensus 219 ~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~ 254 (488)
T TIGR02900 219 EGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQ 254 (488)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335678999999999999999988887766655544
No 21
>PRK15099 O-antigen translocase; Provisional
Probab=99.74 E-value=1.9e-15 Score=148.83 Aligned_cols=242 Identities=15% Similarity=0.081 Sum_probs=186.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc-cChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCCCCCcc
Q 039534 106 WSIALPAALALAADPIASLIDTAFVGH-LGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDGSSQ 184 (380)
Q Consensus 106 l~~a~P~~~~~l~~~l~~~id~~~ig~-lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g~~~~~ 184 (380)
+|-+.-.....+...+.+.+-...+.+ +|+++.+.++....+..+...+..++ +..+....++|+ ++
T Consensus 4 ~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G-------~~~a~~~~ia~~--~~--- 71 (416)
T PRK15099 4 AKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAG-------IFNGVTKYVAQY--HD--- 71 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCC-------ccceeeeeHHhc--CC---
Confidence 444555566677777777777777777 89999988888887777665433332 222223345553 22
Q ss_pred cccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 039534 185 IDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGA 264 (380)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~ 264 (380)
|+++.++.+..++.+.+..++.++++++.+.+++...++.++| -..++.+..+..++..+.....++
T Consensus 72 -------~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 138 (416)
T PRK15099 72 -------QPQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD------YQGVVRAVALIQMGIAWANLLLAI 138 (416)
T ss_pred -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5588899999999999999999999999999999998874322 346677777777788889999999
Q ss_pred HhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhcccc----ccCCCCChHHHHH
Q 039534 265 FRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVL----LMSPDIDGRRVVH 340 (380)
Q Consensus 265 l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~ 340 (380)
+|+.||++.++..++++.++|+.+ +++++. ..|+.|+++|+.+++.+..+..+++++|+++ +.+++++++.+++
T Consensus 139 lr~~~~~~~~~~~~~~~~~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 216 (416)
T PRK15099 139 LKGFRDAAGNALSLIVGSLIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSWDNGLAGQ 216 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccCCHHHHHH
Confidence 999999999999999999999887 444443 2499999999999999988877766654432 1245667888999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH-ccCchhh
Q 039534 341 YLKSGGLLIGRTIAVLLTMTLATSMAA-REGPIPW 374 (380)
Q Consensus 341 ~l~~~~p~~~~~l~~~~~~~~~~~~~~-~lG~~~~ 374 (380)
.++.|.|...+++..++...+.+.+++ .+|+++.
T Consensus 217 ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~v 251 (416)
T PRK15099 217 LGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEV 251 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHh
Confidence 999999999999999999999998885 8887763
No 22
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.74 E-value=4.2e-15 Score=146.75 Aligned_cols=232 Identities=18% Similarity=0.167 Sum_probs=193.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCC
Q 039534 100 ELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSD 179 (380)
Q Consensus 100 ~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g 179 (380)
+..|++.+...|.++......+...+|+.+.+.+.+...+.+..+.+++++...++ ..++.+.+.|..++...
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGif-------gvai~tvllP~lSr~~~ 301 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIF-------GVALSTVLLPSLSRHAA 301 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHhh
Confidence 56799999999999999999999999999999999889999999999988876444 45566667888888766
Q ss_pred CCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCC--CCcccHHHHHHHHHHHHHhHHHHHH
Q 039534 180 DGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIP--ADSPMRVPAENFLNLRAFGAPPIVI 257 (380)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~a~~~l~~~~~~~~~~~l 257 (380)
++|. ++.++..++++++++++.+|+++++..+++|+...+++. -+++-.......++.++++.+++.+
T Consensus 302 ~~~~----------~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L 371 (518)
T COG0728 302 NGDW----------PEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFAL 371 (518)
T ss_pred cCCh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHH
Confidence 6655 899999999999999999999999999999999998642 2344567788899999999999999
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhccccccCCCCChHH
Q 039534 258 ALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRR 337 (380)
Q Consensus 258 ~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~~~~~~~~~~~ 337 (380)
..++...+.+.+|+|.|+++.+++.++|+.+|..++.. +|..|.++|+.++.++++.++++.++|+..... ...|..
T Consensus 372 ~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~-~~~~~~ 448 (518)
T COG0728 372 VKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKRLVYLP-GRGWGL 448 (518)
T ss_pred HHHHHHHHHHccCCCcChHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cchhhH
Confidence 99999999999999999999999999999999777664 888999999999999999999888877765443 333333
Q ss_pred HHHHHHhhHHHHHHH
Q 039534 338 VVHYLKSGGLLIGRT 352 (380)
Q Consensus 338 ~~~~l~~~~p~~~~~ 352 (380)
.. ..|..+-.+++.
T Consensus 449 ~~-~~k~~l~~~i~~ 462 (518)
T COG0728 449 FL-ILKLLLASAIMA 462 (518)
T ss_pred HH-HHHHHHHHHHHH
Confidence 33 344433333333
No 23
>PRK15099 O-antigen translocase; Provisional
Probab=99.68 E-value=1.8e-14 Score=141.97 Aligned_cols=200 Identities=14% Similarity=0.011 Sum_probs=170.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhc
Q 039534 98 FDELGLEIWSIALPAALALAADPIASLIDTAFVG-HLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQ 176 (380)
Q Consensus 98 ~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig-~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~ 176 (380)
+++.+|+++++++|..++++..++.+.+|+.+++ ++|.+++++++.+.++.+... .....++..+.+|.+++
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~-------~~~~~~~~~a~~P~~s~ 282 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYL-------QFITASFSVYLLPTLSR 282 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999999999999997 699999999999999977542 23355666677889888
Q ss_pred cCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHH
Q 039534 177 GSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIV 256 (380)
Q Consensus 177 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 256 (380)
. +|+ ++.++.+++.....+.++++++++++++++++..++..+ -+..+.+++++++++.++..
T Consensus 283 ~---~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~----~~~~~~~~~~~l~~~~~l~~ 345 (416)
T PRK15099 283 L---TEK----------RDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSN----KFTAMRDLFAWQLVGDVLKV 345 (416)
T ss_pred c---CCh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHHHHH
Confidence 3 333 778888999999999999999999999999999999853 24558889999999999988
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHh
Q 039534 257 IALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLS 323 (380)
Q Consensus 257 l~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~ 323 (380)
.+..+...+-..++++..+...+...++++++++++++. +|..|+++++.+++.+..++..+...
T Consensus 346 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 346 GAYVFGYLVIAKASLRFYILAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877777788889989999999999999999999875 89999999999999999987765543
No 24
>PRK10459 colanic acid exporter; Provisional
Probab=99.67 E-value=6.4e-14 Score=140.97 Aligned_cols=202 Identities=12% Similarity=-0.007 Sum_probs=169.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhcc
Q 039534 99 DELGLEIWSIALPAALALAADPIASLIDTAFVGH-LGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQG 177 (380)
Q Consensus 99 ~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~-lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~ 177 (380)
++..|++++++.|.+.+++...+.+.+|+.++|+ +|.++++.++.+.++.++... .....+.....|..++.
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~-------~i~~~i~~v~~P~~s~~ 275 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPM-------KINPIITRVAFPVFAKI 275 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHh
Confidence 4567999999999999999999999999999999 788899999999888766532 22333444456666662
Q ss_pred CCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHH
Q 039534 178 SDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVI 257 (380)
Q Consensus 178 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l 257 (380)
++ |+++.++.+++...+...+++|+++++..+++++..+++++ -+..+...++++++...+..+
T Consensus 276 --~~----------~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~----~~~~a~~~l~il~~~~~~~~~ 339 (492)
T PRK10459 276 --QD----------DTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGE----KWNSAIPILQLLCIVGLLRSV 339 (492)
T ss_pred --cC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCh----hHHhHHHHHHHHHHHHHHHHH
Confidence 22 45888999999999999999999999999999999988752 267789999999999999999
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhcc
Q 039534 258 ALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDN 325 (380)
Q Consensus 258 ~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~ 325 (380)
......++++.||+|.+++.+++..+++++..+++.. .+|+.|+++|+.+++.+..++..++.+|+
T Consensus 340 ~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~~ 405 (492)
T PRK10459 340 GNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIKP 405 (492)
T ss_pred HHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888886666654 48999999999999999988888877553
No 25
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.66 E-value=4.3e-14 Score=141.67 Aligned_cols=187 Identities=24% Similarity=0.239 Sum_probs=166.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhcc
Q 039534 99 DELGLEIWSIALPAALALAADPIASLIDTAFVGH-LGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQG 177 (380)
Q Consensus 99 ~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~-lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~ 177 (380)
++.+|++++.++|..+.++...+.+.+|+.++++ +|.++++.++.+..+.... ..+.+++...+.|..++.
T Consensus 209 ~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~--------~~~~~~l~~~l~P~~s~~ 280 (480)
T COG2244 209 LALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL--------LIVASALNRVLFPALSRA 280 (480)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999 7888899888776666655 455677778888999997
Q ss_pred CCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHH
Q 039534 178 SDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVI 257 (380)
Q Consensus 178 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l 257 (380)
+.+++. ++.++...+.+.+...+++|..+++..+++++..++++++. ..+...+++++++.++..+
T Consensus 281 ~~~~~~----------~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~----~~~~~~l~il~~~~~~~~~ 346 (480)
T COG2244 281 YAEGDR----------KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY----ASAAPILQLLALAGLFLSL 346 (480)
T ss_pred HHcCcH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc----cchhHHHHHHHHHHHHHHH
Confidence 766655 88889999999999999999999999999999999986432 3388999999999999999
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 039534 258 ALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVIS 310 (380)
Q Consensus 258 ~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is 310 (380)
.......+++.|+++..++.+.++.++|++++++++.. +|+.|++.++ .+
T Consensus 347 ~~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~-~~ 396 (480)
T COG2244 347 VSLTSSLLQALGKQRLLLLISLISALLNLILNLLLIPR--FGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH-HH
Confidence 99999999999999999999999999999999999875 8999999999 44
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.45 E-value=9.4e-11 Score=116.57 Aligned_cols=224 Identities=16% Similarity=0.078 Sum_probs=181.2
Q ss_pred cChh-hHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHH
Q 039534 133 LGSV-ELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIG 211 (380)
Q Consensus 133 lg~~-~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (380)
+|.. +.+|+.++.++.++...++. ..++.+...|...+.. ++ |+++.++..+..+.+...+.
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~------~gal~~~~IP~~~~~~-~~----------~~~~~~~f~~~~~~~~~~~~ 67 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLA------GGALSAAFIPVFSKAR-EK----------GEEEARRFISTLLTILLIIS 67 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHh-cc----------CHHHHHHHHHHHHHHHHHHH
Confidence 6765 57789999998888754432 1234455567777743 23 45888888888888888899
Q ss_pred HHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHH
Q 039534 212 IAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPI 291 (380)
Q Consensus 212 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~ 291 (380)
+.++++.+++++++..++....|++..+.+.+++++++|..++..+..++.+++|+.+|...+....++.++.-++ .+
T Consensus 68 ~~l~~l~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~--~~ 145 (451)
T PF03023_consen 68 LLLTLLGILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIIL--SL 145 (451)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHH--HH
Confidence 9999999999999999997666788999999999999999999999999999999999999999988888776555 33
Q ss_pred HHHhhcCC---hhHHHHHHHHHHHHHHHHHHHHHhccccccCC--CCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 039534 292 LIFFFHFG---IGGAAIATVISEYLIAFILIWKLSDNVLLMSP--DIDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMA 366 (380)
Q Consensus 292 li~~~~~G---i~Gaa~a~~is~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~p~~~~~l~~~~~~~~~~~~~ 366 (380)
++.....| +.+.++|..++..+..++.+.+.+|.....++ +++.++.+++++...|..+..........+-..++
T Consensus 146 ~~~~~~~~~~~i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~la 225 (451)
T PF03023_consen 146 LLLSNSWGQENIYALAWGVLIGAIIQFLIQLPYLRRFGFRFRPKFDWRDPNLKRFLKLAIPLLLSSSISQINILVDRALA 225 (451)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344577 89999999999999999998888876654444 44556789999999999999999998888888899
Q ss_pred HccCchhhh
Q 039534 367 AREGPIPWL 375 (380)
Q Consensus 367 ~~lG~~~~~ 375 (380)
+.+++-..+
T Consensus 226 S~l~~G~vs 234 (451)
T PF03023_consen 226 SFLGEGSVS 234 (451)
T ss_pred hCCCccHHH
Confidence 888876633
No 27
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.23 E-value=2.3e-08 Score=99.28 Aligned_cols=254 Identities=14% Similarity=0.055 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cChh-hHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCCC
Q 039534 103 LEIWSIALPAALALAADPIASLIDTAFVGH-LGSV-ELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDD 180 (380)
Q Consensus 103 k~il~~a~P~~~~~l~~~l~~~id~~~ig~-lg~~-~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g~ 180 (380)
+.++|-++-.....++.-+.+.+-..++.. +|.. ..+|+.++.++.|...-++.-| +++++..|.-.+...+
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaeg------afs~aFVPv~~~~~~~ 80 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEG------AFSSAFVPVLAEAKKK 80 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhch------hHhhhhhHHHHHHHHc
Confidence 566677777777778888888886666655 8985 5679999999999998776543 2444445666663322
Q ss_pred CCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCC-CcccHHHHHHHHHHHHHhHHHHHHHH
Q 039534 181 GSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPA-DSPMRVPAENFLNLRAFGAPPIVIAL 259 (380)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~a~~~l~~~~~~~~~~~l~~ 259 (380)
+ ++++.++.......+...+.+..+++..++.+++.+.+..+. |++....+....+++.|..++..+..
T Consensus 81 ~----------~~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~a 150 (518)
T COG0728 81 E----------GEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSA 150 (518)
T ss_pred c----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 225555555555556777777778878889999996665443 33333368888999999999999999
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhccccccCCCC--ChHH
Q 039534 260 AAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDI--DGRR 337 (380)
Q Consensus 260 ~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~~~~~~~--~~~~ 337 (380)
...++||..++...+.+.-+.-++.-|....++......-..+.+||+.++-++..++.+..++|.....++++ +.++
T Consensus 151 l~~aiLNs~~~F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~~~~ 230 (518)
T COG0728 151 LFGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFKDPG 230 (518)
T ss_pred HHHHHHhccCeechhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCchh
Confidence 99999999999999999888777766644454444322236788999999999999999999988765555444 4468
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHccCch
Q 039534 338 VVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGPI 372 (380)
Q Consensus 338 ~~~~l~~~~p~~~~~l~~~~~~~~~~~~~~~lG~~ 372 (380)
.+++++.-.|..+......+...+-+.+++.+.+-
T Consensus 231 lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~G 265 (518)
T COG0728 231 LKRFLKLMLPALLGVSISQINLLIDTAIASFLAEG 265 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999888899888443
No 28
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.21 E-value=2.3e-10 Score=109.47 Aligned_cols=212 Identities=15% Similarity=0.078 Sum_probs=146.3
Q ss_pred hhhhccCCCcccccCCccccCCCCCcccccccccccccccc-cCCCCCCCCCCCccCCCCCCCCcccccCch---hhhhH
Q 039534 13 LCSMHSSSSSYYYNSKQTKSSSTPGKFRIFNRRNLTCSARL-KSAPHKKKTASTSLQTSPPDPSRFSLSGSF---SLINI 88 (380)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 88 (380)
+.+++.|.+++..+.++.+.+...+..+........+.+.. ..+ . . .......+...+......... .++..
T Consensus 124 ~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~g-~-~--g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (342)
T TIGR00797 124 AYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFGKFG-F-L--GIVGAALATVISYWLMFLLLLYYIKKAKK 199 (342)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhHHHHhcCcc-c-c--ccHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44567777888888899999988888776655543322211 100 0 0 000000000000000000000 00000
Q ss_pred HH-H-hhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 039534 89 IA-R-LSDGFKFDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSF 166 (380)
Q Consensus 89 ~~-~-~~~~~~~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l 166 (380)
.+ + .+....+++..|+++++++|.+++++...+...+|+.+++++|++++++++++.++.++. .....++
T Consensus 200 ~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~--------~~~~~~~ 271 (342)
T TIGR00797 200 IGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLL--------FMPAFGF 271 (342)
T ss_pred cccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH--------HHHHHHH
Confidence 00 0 001123456789999999999999999999999999999999999999999998887765 2334556
Q ss_pred hhhhHHHhhccCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHH
Q 039534 167 VAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLN 246 (380)
Q Consensus 167 ~~~~~~~va~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~ 246 (380)
..+.+|..++++|++|. +++++..++++...+.++++.+++++++++++.+++.+ |+++.+.+..+++
T Consensus 272 ~~a~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~--~~~~~~~~~~~~~ 339 (342)
T TIGR00797 272 GIAVSILVGQALGAGDP----------KRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTN--DPEVLELAAIYLI 339 (342)
T ss_pred HHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Confidence 67778899999888877 99999999999999999999999999999999999984 5778899988887
Q ss_pred HH
Q 039534 247 LR 248 (380)
Q Consensus 247 ~~ 248 (380)
+.
T Consensus 340 ~~ 341 (342)
T TIGR00797 340 FV 341 (342)
T ss_pred Hh
Confidence 64
No 29
>PRK10459 colanic acid exporter; Provisional
Probab=99.06 E-value=1.3e-07 Score=95.27 Aligned_cols=235 Identities=12% Similarity=0.079 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCCCC
Q 039534 103 LEIWSIALPAALALAADPIASLIDTAFVGH-LGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDG 181 (380)
Q Consensus 103 k~il~~a~P~~~~~l~~~l~~~id~~~ig~-lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g~~ 181 (380)
++..+-+.-..+.++...+.+.+....+.+ +|+++.+.++.+..+.++...+..+|+.. +.+.+ +
T Consensus 5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~----------aii~~----~ 70 (492)
T PRK10459 5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGA----------SIIQR----Q 70 (492)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHH----------HHHhc----c
Confidence 455666677788888888889998888888 89999999999998888776554443211 12221 1
Q ss_pred CcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHHHHH
Q 039534 182 SSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAA 261 (380)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~~~~ 261 (380)
+. ++ +.......+.+..++.++++.+.+++++..+++. |+ ....+++.++..++..+....
T Consensus 71 ~~--------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~ 131 (492)
T PRK10459 71 DI--------SH----LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYHN---PE----LAPLIKTLSLAFVIIPIGQQF 131 (492)
T ss_pred cC--------CH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---hh----hHHHHHHHHHHHHHHHHhhHH
Confidence 11 11 2344556666777777777777788887766542 22 445788888888888888899
Q ss_pred HHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhccccccCCCCChHHHHHH
Q 039534 262 QGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRRVVHY 341 (380)
Q Consensus 262 ~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 341 (380)
..++|+..+.+......++..++...+...+.. .++|+.+..++..++..+..++..+..++ +...+++++++.+++.
T Consensus 132 ~~~l~r~~~f~~~a~~~~~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~k~l 209 (492)
T PRK10459 132 RALLQKELEFNKLAKIEISAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRK-IYRPALHFSLASVKPN 209 (492)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcc-cCCccceecHHHHHHH
Confidence 999999999999888888888777776655544 36899999999999998877655433333 2223334567788999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHcc-Cch
Q 039534 342 LKSGGLLIGRTIAVLLTMTLATSMAARE-GPI 372 (380)
Q Consensus 342 l~~~~p~~~~~l~~~~~~~~~~~~~~~l-G~~ 372 (380)
++.+.|.....+...+...+-..+.+++ |+.
T Consensus 210 l~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~ 241 (492)
T PRK10459 210 LSFGAWQTAERIINYLNTNIDTILIGRILGAE 241 (492)
T ss_pred HhhhHHHHHHHHHHHHHhcCchhhhhHhhchH
Confidence 9999999998888777666555554443 443
No 30
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.05 E-value=3.4e-07 Score=83.98 Aligned_cols=234 Identities=15% Similarity=0.095 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc-cChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCCCCCccc
Q 039534 107 SIALPAALALAADPIASLIDTAFVGH-LGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDGSSQI 185 (380)
Q Consensus 107 ~~a~P~~~~~l~~~l~~~id~~~ig~-lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g~~~~~~ 185 (380)
|-+.-....++...+.+.+-..++.+ +|.++.+.+++...+.++...+..+| +.....-..++ .+.
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G-------~~~~~~r~~~~----~~~-- 69 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLG-------LSQAIVRFIAE----YKD-- 69 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHH----hhh--
Confidence 44455677788888888888888888 89999999999988888775443333 22212223333 111
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039534 186 DHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAF 265 (380)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~l 265 (380)
|+++.+..........+..++.+.. ...+...++.+ + ....+........++.........++
T Consensus 70 ------~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (273)
T PF01943_consen 70 ------KKELRSAYFSSVLFLLLIFSLIFLL-----ILLIASFFGNP-S-----LSLILIILALLILILSSLSSVFSGLL 132 (273)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHcCCc-h-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1133333444343333333333222 22222244422 2 22333333333335788888999999
Q ss_pred hccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhccccccCCCCChHHHHHHHHhh
Q 039534 266 RGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRRVVHYLKSG 345 (380)
Q Consensus 266 ~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 345 (380)
++.++.+...+.+++..++.+++..+++.. ..++.+..++..+++.+..++..++.+|+.+..+...+++..++.++.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (273)
T PF01943_consen 133 QGLQRFKYIAISNIISSLLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLRPRFSFFSKKFFKEILRFG 211 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHH
Confidence 999999999999999988888766666654 3448899999999999998888888876554333344578899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCc
Q 039534 346 GLLIGRTIAVLLTMTLATSMAAREGP 371 (380)
Q Consensus 346 ~p~~~~~l~~~~~~~~~~~~~~~lG~ 371 (380)
.|.....+........-..+.+.+-+
T Consensus 212 ~~~~~~~~~~~~~~~~d~~ii~~~~g 237 (273)
T PF01943_consen 212 LPLFLSSLLSWLYSQIDRLIIGYFLG 237 (273)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhCC
Confidence 99999999888888777766666633
No 31
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.84 E-value=7.4e-08 Score=80.46 Aligned_cols=81 Identities=31% Similarity=0.406 Sum_probs=75.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhc
Q 039534 245 LNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSD 324 (380)
Q Consensus 245 l~~~~~~~~~~~l~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~ 324 (380)
+++++++.++..+......++++.||++..++.++++.++|+++++++++ ++|..|+++|+.+++.+..++..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999976 4999999999999999999999998887
Q ss_pred ccc
Q 039534 325 NVL 327 (380)
Q Consensus 325 ~~~ 327 (380)
+.+
T Consensus 80 ~~~ 82 (146)
T PF14667_consen 80 KIG 82 (146)
T ss_pred HhC
Confidence 654
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=98.78 E-value=1.2e-05 Score=73.05 Aligned_cols=215 Identities=13% Similarity=0.123 Sum_probs=139.9
Q ss_pred HHHHHHHhhhc-cChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCCCCCcccccchhhhhhhhhHHH
Q 039534 122 ASLIDTAFVGH-LGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSI 200 (380)
Q Consensus 122 ~~~id~~~ig~-lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g~~~~~~~~~~~~~~~~~~~~~ 200 (380)
.+.+-..++.| +|.++.+.++....+..+...+..+| + .....+. .++ |+++.++..
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g-------~----~~~~~~~-~~~----------~~~~~~~~~ 60 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLG-------L----RQSLVRS-AAR----------DKQDIRSLL 60 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHH-------H----HHHHHHh-hcc----------CHHHHHHHH
Confidence 45666777778 89999999998888877765443322 1 1122221 112 335566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCchHHHHHHHH
Q 039534 201 STSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGA 280 (380)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~l~g~g~~~~~~~~~i~ 280 (380)
..........++...++ ...+..+++ + .....++...++..++..+.....+++++.+|.+......++
T Consensus 61 ~~~~~~~~~~~~~~~~~----~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 129 (251)
T PF13440_consen 61 RFSLLVSLLLAVILAIL----AILIAYFFG---D----PELFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIV 129 (251)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHhC---C----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66555544444443332 222223333 2 124556777778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhccccccCCCCChHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039534 281 GNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVLLMSPDIDGRRVVHYLKSGGLLIGRTIAVLLTMT 360 (380)
Q Consensus 281 ~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~l~~~~~~~ 360 (380)
..++.+.+..++... +.+..+..++..++..+..+....+.+++. +.+.+.+. .+..+.+.|.....+..+....
T Consensus 130 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 204 (251)
T PF13440_consen 130 RSLLRLLLLVLLLYL-GLNLWSILLAFIISALLALLISFYLLRRKL---RLSFKFSW-RRLLKYGLPFSLSSLLSWLLSQ 204 (251)
T ss_pred HHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHhcccc---CCCchhhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 888875544444433 348889999999998887766655443222 22222223 3478999999999988888887
Q ss_pred HHHHHHHc-cCchhh
Q 039534 361 LATSMAAR-EGPIPW 374 (380)
Q Consensus 361 ~~~~~~~~-lG~~~~ 374 (380)
.-..+++. +|+++.
T Consensus 205 ~~~~li~~~l~~~~~ 219 (251)
T PF13440_consen 205 IDRLLIGYFLGPEAV 219 (251)
T ss_pred HHHHHHHHHcCHHHH
Confidence 77777777 766653
No 33
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=98.66 E-value=2.8e-08 Score=98.78 Aligned_cols=204 Identities=19% Similarity=0.157 Sum_probs=168.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCh--hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhc
Q 039534 99 DELGLEIWSIALPAALALAADPIASLIDTAFVGHLGS--VELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQ 176 (380)
Q Consensus 99 ~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~--~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~ 176 (380)
.+.+++++++++|..++-.+++....+-....|.++. .++++.++......... +...++..+..+.+++
T Consensus 243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~--------~~~~~~~~a~strv~n 314 (473)
T KOG1347|consen 243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHL--------MIPGAFSAAVSTRVSN 314 (473)
T ss_pred hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH--------HHhhhhhhhHHHHHHH
Confidence 4567899999999999999999999999999999986 46777777666655542 2233566666779999
Q ss_pred cCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHH
Q 039534 177 GSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIV 256 (380)
Q Consensus 177 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 256 (380)
.+|+++. ++.+.....++...+.++...+..++...+.+..+|. +|+|+.+...+...+++....+..
T Consensus 315 eLGag~p----------~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift--~~~ev~~~va~~~pll~~~~~~~~ 382 (473)
T KOG1347|consen 315 ELGAGKP----------KRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFT--NSKEVLDLVADLTPLLALSILLNA 382 (473)
T ss_pred HHcCCCh----------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999988 8888888889888899999999999999999999998 467899999999999999999999
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHH-HHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 039534 257 IALAAQGAFRGFMDTKTPLYAIGAGN-LINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKL 322 (380)
Q Consensus 257 l~~~~~~~l~g~g~~~~~~~~~i~~~-~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~ 322 (380)
...++++..+|.|.++...++++.+. ++.+++..++-+..++|..|.+++...+..+......+..
T Consensus 383 ~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~ 449 (473)
T KOG1347|consen 383 LQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVT 449 (473)
T ss_pred chhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHhe
Confidence 99999999999999999999988765 5556655655555689999999999998555555544443
No 34
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.47 E-value=0.00039 Score=64.21 Aligned_cols=244 Identities=14% Similarity=0.040 Sum_probs=142.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCh---hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhc
Q 039534 100 ELGLEIWSIALPAALALAADPIASLIDTAFVGHLGS---VELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQ 176 (380)
Q Consensus 100 ~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~---~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~ 176 (380)
..+++++++-+|+.++.+...+...+-+.-+.+-.+ +.+|+++++..+.-... +....+-.....++.+
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~--------sp~~~~~~igl~~V~s 79 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFA--------SPLSMFHHIGLVFVNS 79 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh--------ChhhhhHHHHHHHhcc
Confidence 446899999999999999999988888887776332 34889998887765542 2222222222223322
Q ss_pred cCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHH-HH----HcHHHHHHhcCCCCCcccHHHHHHHHHHHHHh
Q 039534 177 GSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALA-LS----FGSGFLMNIMGIPADSPMRVPAENFLNLRAFG 251 (380)
Q Consensus 177 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~ 251 (380)
++ + ++. .+......+...+.+ .. -++..++.-+.+ -++++.+.++..+.++.+.
T Consensus 80 -----~r----------s--rr~---~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhg-Vs~~va~~tr~a~l~L~ll 138 (345)
T PF07260_consen 80 -----KR----------S--RRK---AVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHG-VSPSVAEKTRRAFLYLTLL 138 (345)
T ss_pred -----hh----------h--hHH---HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhC-CCHHHHHHHHHHHHHHHHH
Confidence 11 1 111 111112233333222 12 233444443332 4577999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhh-------cCChhHHHHHHHHHHHHHHHHHHH-HHh
Q 039534 252 APPIVIALAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFF-------HFGIGGAAIATVISEYLIAFILIW-KLS 323 (380)
Q Consensus 252 ~~~~~l~~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~-------~~Gi~Gaa~a~~is~~~~~~l~~~-~~~ 323 (380)
..+.++.....+++-=.+++......++...+.-+++...++... -.|+.|...+..+ +.-...+.+| .++
T Consensus 139 Pfl~alr~~~qGILik~r~s~iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~v-r~t~v~LGy~~~i~ 217 (345)
T PF07260_consen 139 PFLDALRWIHQGILIKHRHSWIVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAV-RFTIVCLGYYQSIH 217 (345)
T ss_pred HHHHHHHHHHhhHhhhccceeEeehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 999999999999888555555555545444444444334444211 1233333322222 1111122222 222
Q ss_pred ccccccCC--CCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc-cCchh
Q 039534 324 DNVLLMSP--DIDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAR-EGPIP 373 (380)
Q Consensus 324 ~~~~~~~~--~~~~~~~~~~l~~~~p~~~~~l~~~~~~~~~~~~~~~-lG~~~ 373 (380)
.+...... +.+....++++++..|..........+--+++.+++| +|..+
T Consensus 218 ~~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~ 270 (345)
T PF07260_consen 218 DIIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQ 270 (345)
T ss_pred hhccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Confidence 22222211 2334468999999999999999999999999999999 55543
No 35
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=98.37 E-value=0.00017 Score=72.28 Aligned_cols=233 Identities=17% Similarity=0.130 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCCCC
Q 039534 103 LEIWSIALPAALALAADPIASLIDTAFVGH-LGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDG 181 (380)
Q Consensus 103 k~il~~a~P~~~~~l~~~l~~~id~~~ig~-lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g~~ 181 (380)
+++.|-+.-....++...+.+.+-...+.+ +|+++.+.++.+..+.++...+..+| +.....-.++++..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G-------~~~ai~r~ia~~~~~~ 78 (480)
T COG2244 6 KKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFG-------LPAAITREIAEYREKG 78 (480)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcC-------CcHHHHHHHHHhhccc
Confidence 667788888888899999999998888888 89999999999888888876544333 2222222444422111
Q ss_pred CcccccchhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHHHH
Q 039534 182 SSQIDHGVEQQGKKLLPS-ISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALA 260 (380)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~~~ 260 (380)
++ ...... ....+......+++.....+...+. + ......+++..+..++......
T Consensus 79 ~~----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------~----~~~~~~~~~~~~~~~~~~~~~~ 135 (480)
T COG2244 79 EY----------LLLILLSVLLLLLLALILLLLLLLIAYLLAPI---------D----PVLALLLRILSLALLLLPLSSV 135 (480)
T ss_pred HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------C----hhhHHHHHHHHHHHHHHHHHHH
Confidence 11 222222 2223323333222222222111111 1 1255667888999999999999
Q ss_pred HHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHh-ccccccCCCCC--hHH
Q 039534 261 AQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLS-DNVLLMSPDID--GRR 337 (380)
Q Consensus 261 ~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~-~~~~~~~~~~~--~~~ 337 (380)
..+++|+.++.+......+.. ..-+.....+.. ....++.|+..++......+..++.. ++++..+..++ ++.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (480)
T COG2244 136 LRGLFQGFGRFGPLALSIVSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRFSLAL 211 (480)
T ss_pred HHHHHHHHhhcccchhHHHHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHH
Confidence 999999999999999985444 111111122211 34566777777777776666655553 23323333344 678
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcc
Q 039534 338 VVHYLKSGGLLIGRTIAVLLTMTLATSMAARE 369 (380)
Q Consensus 338 ~~~~l~~~~p~~~~~l~~~~~~~~~~~~~~~l 369 (380)
+++.++.+.|.....+.......+=..+.+..
T Consensus 212 ~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~ 243 (480)
T COG2244 212 LKELLRFGLPLLLSSLLNFLFTNIDTLLLGLF 243 (480)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888877777655544
No 36
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.09 E-value=0.0003 Score=71.34 Aligned_cols=215 Identities=13% Similarity=0.028 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cC-hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccC
Q 039534 102 GLEIWSIALPAALALAADPIASLIDTAFVGH--LG-SVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGS 178 (380)
Q Consensus 102 ~k~il~~a~P~~~~~l~~~l~~~id~~~ig~--lg-~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~ 178 (380)
-+++++++...+.+.+.-.+.+--|++.+.. +. .++-+.|++..++-.++.=++.-|+= -..-..-++..
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiE-------Es~~~~Fsk~l 324 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIE-------ESSRLYFSKLL 324 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHH-------HHHHHHHHHHh
Confidence 4889999999999999999999999999999 44 45788899988888887655554522 12233444443
Q ss_pred CCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHH
Q 039534 179 DDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIA 258 (380)
Q Consensus 179 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~ 258 (380)
..++.- +.-.+++.++..+.+...+++...+++.+..+....++.++.+++++.= ....+...+++.+.-+|++++|
T Consensus 325 ~~~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w--~~~~~~~~l~~yc~yi~~la~N 401 (549)
T PF04506_consen 325 SRDNSK-KKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRW--SSTSAPSLLRAYCYYIPFLAIN 401 (549)
T ss_pred cccCch-hhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcc--cCCCchHHHHHHHHHHHHHHHc
Confidence 333220 0001224466777888888888899988888888888889998864311 2233688899999999999999
Q ss_pred HHHHHHHhccCCchHHHHHH---HHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhcccc
Q 039534 259 LAAQGAFRGFMDTKTPLYAI---GAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDNVL 327 (380)
Q Consensus 259 ~~~~~~l~g~g~~~~~~~~~---i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~ 327 (380)
-++-+++++..+.+.....+ ++..++.+..+++|+.. ++|..|-.+|..+...+..+...+++++..+
T Consensus 402 Gi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~~~ 472 (549)
T PF04506_consen 402 GITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRYFR 472 (549)
T ss_pred cHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998876655543 34446667778888876 7999999999999999999888888866543
No 37
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=0.00051 Score=66.20 Aligned_cols=223 Identities=13% Similarity=0.054 Sum_probs=155.9
Q ss_pred hHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---cChhhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 039534 87 NIIARLSDGFKFDELGLEIWSIALPAALALAADPIASLIDTAFVGH---LGSVELAAVGVSVSVFNLVSKLFNVPLLNIT 163 (380)
Q Consensus 87 ~~~~~~~~~~~~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~---lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~ 163 (380)
+.+++..+.......-++..++..-.+.+.++-.+.+-=|.+++.. ..-.+-|.+.+..++-.++.-++.-|
T Consensus 223 dllpk~~~n~~~~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~P----- 297 (530)
T KOG2864|consen 223 DLLPKVSENERGIFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRP----- 297 (530)
T ss_pred hhccCCCCCCccccccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhCh-----
Confidence 3344433333333445788888889999999999999999999986 23234444555544444444333333
Q ss_pred hhhhhhhHHHhhccCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHH
Q 039534 164 TSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAEN 243 (380)
Q Consensus 164 ~~l~~~~~~~va~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~ 243 (380)
+=-......+|....++. +|.++..+.+...+.+...+|+.++.+....+++++.+.++++= ....+..
T Consensus 298 --IEEss~~~FA~~ls~~~q-------e~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kw--ss~~~~~ 366 (530)
T KOG2864|consen 298 --IEESSYIYFARLLSRDNQ-------ENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKW--SSGGGSL 366 (530)
T ss_pred --hHHHHHHHHHHHhhccch-------hhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccc--cCCCchH
Confidence 222223345554433332 47788888999999999999988888888889999998876422 2234668
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhccCCchHHHHH---HHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHH
Q 039534 244 FLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYA---IGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIW 320 (380)
Q Consensus 244 ~l~~~~~~~~~~~l~~~~~~~l~g~g~~~~~~~~---~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~ 320 (380)
.+++.|.-+|+.++|.+.-++.++.++.+..... .++..++.++++|+++.. +|..|--+|.++...+..+....
T Consensus 367 lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~ 444 (530)
T KOG2864|consen 367 LLSWYCLYIPFLAINGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLR 444 (530)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999998877655543 445567778899999876 67788888888888777777766
Q ss_pred HHhcccc
Q 039534 321 KLSDNVL 327 (380)
Q Consensus 321 ~~~~~~~ 327 (380)
++++..+
T Consensus 445 fI~~~yr 451 (530)
T KOG2864|consen 445 FIRHYYR 451 (530)
T ss_pred HHHHHhc
Confidence 6665443
No 38
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=96.66 E-value=0.011 Score=53.89 Aligned_cols=72 Identities=21% Similarity=0.148 Sum_probs=60.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhc
Q 039534 98 FDELGLEIWSIALPAALALAADPIASLIDTAFVGH-LGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQ 176 (380)
Q Consensus 98 ~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~-lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~ 176 (380)
+++..|++++.+.|..++.+...+...+|+.++++ .|.++++.++++.++..... ....++.....|..++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~--------~~~~~~~~~~~P~~s~ 271 (273)
T PF01943_consen 200 SKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAIS--------FLLSSISTVLFPRLSR 271 (273)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999 78889999999999888773 3345555556677665
Q ss_pred c
Q 039534 177 G 177 (380)
Q Consensus 177 ~ 177 (380)
.
T Consensus 272 l 272 (273)
T PF01943_consen 272 L 272 (273)
T ss_pred h
Confidence 3
No 39
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=94.33 E-value=0.35 Score=43.44 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhc
Q 039534 103 LEIWSIALPAALALAADPIASLIDTAFVGH-LGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQ 176 (380)
Q Consensus 103 k~il~~a~P~~~~~l~~~l~~~id~~~ig~-lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~ 176 (380)
++.++.+.|..+..+...+.+.+|.++++. +|.++++.++++.++.+.... ...+++.....|..+|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~-------~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 183 RRLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPAS-------LLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhC
Confidence 348999999999999999999999999999 999999999999988876531 3344454444555544
No 40
>COG4267 Predicted membrane protein [Function unknown]
Probab=93.88 E-value=6.4 Score=37.83 Aligned_cols=122 Identities=16% Similarity=0.160 Sum_probs=81.0
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039534 186 DHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAF 265 (380)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~l 265 (380)
++.-|+|.+++..-+.-...++...+..++..+ +..++|. +.. |=...+.....+...-....++
T Consensus 90 D~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~v----------f~~~~~~---si~--yk~l~~~~FV~m~~~Wi~~iFl 154 (467)
T COG4267 90 DCLFEKKQRKILPSYIGVILLVTLVAGVIGLIV----------FFVNNQY---SIV--YKILACALFVGMSLVWILMIFL 154 (467)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHh----------hhhcCch---hHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777766666655555554444311 1111221 112 2222333445555556677889
Q ss_pred hccCCchHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhcc
Q 039534 266 RGFMDTKTPLYAIGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKLSDN 325 (380)
Q Consensus 266 ~g~g~~~~~~~~~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~ 325 (380)
.|..|-+...+.-.+|.++...+..++-. .++.|..++..++..+..++...++.|.
T Consensus 155 S~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~ 211 (467)
T COG4267 155 SGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRY 211 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 99999999999999999998888777654 6899999999999999998887777554
No 41
>COG4267 Predicted membrane protein [Function unknown]
Probab=87.33 E-value=29 Score=33.54 Aligned_cols=117 Identities=13% Similarity=0.098 Sum_probs=76.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCC
Q 039534 191 QQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIALAAQGAFRGFMD 270 (380)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~l~g~g~ 270 (380)
++++++...+++.+.-.+-+-..+++.....++.+..+++- .+.--+..++-..+.........+-.+.--..+
T Consensus 317 ~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~l------S~~~l~lF~vd~lg~s~~i~f~~ll~i~lyfd~ 390 (467)
T COG4267 317 NNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGL------SEYYLDLFYVDVLGVSCQIVFMSLLNIFLYFDY 390 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777888888888888878888888888999999999984 233444445555554444444444444444566
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHh-hcCChhHHHHHHHHHHHH
Q 039534 271 TKTPLYAIGAGNLINAILDPILIFF-FHFGIGGAAIATVISEYL 313 (380)
Q Consensus 271 ~~~~~~~~i~~~~i~i~l~~~li~~-~~~Gi~Gaa~a~~is~~~ 313 (380)
-+..+.....-++.|-++.+++... +++--.|..+|..+.-.+
T Consensus 391 r~i~l~~t~~fli~N~ilT~i~l~lgp~~~g~gff~a~fl~vlv 434 (467)
T COG4267 391 RRIALELTALFLISNGILTFIFLELGPGYYGVGFFLASFLYVLV 434 (467)
T ss_pred hhhhhhhhhHHHHHhHHHHHHHHHhCccceehHHHHHHHHHHHH
Confidence 6777777777778888888877642 344444555555444333
No 42
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=52.34 E-value=2.3e+02 Score=27.52 Aligned_cols=38 Identities=8% Similarity=-0.038 Sum_probs=31.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhc
Q 039534 192 QGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIM 229 (380)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 229 (380)
++++++++.+++...++.......+++....-|+...-
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~ 126 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQV 126 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999888888888877877743
No 43
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=49.96 E-value=1.9e+02 Score=25.77 Aligned_cols=45 Identities=9% Similarity=0.153 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cChhhHHHHHHH
Q 039534 100 ELGLEIWSIALPAALALAADPIASLIDTAFVGH-LGSVELAAVGVS 144 (380)
Q Consensus 100 ~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~-lg~~~laa~~~~ 144 (380)
+..+.+.+...|+...-+...+...+....+++ +|-++--..++.
T Consensus 68 ~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~ 113 (215)
T PF04172_consen 68 RQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEIILSLA 113 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 334677778889999999999999998888888 676544343433
No 44
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=34.97 E-value=2.5e+02 Score=27.35 Aligned_cols=99 Identities=17% Similarity=0.050 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc-cChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccCCCCCcccc
Q 039534 108 IALPAALALAADPIASLIDTAFVGH-LGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGSDDGSSQID 186 (380)
Q Consensus 108 ~a~P~~~~~l~~~l~~~id~~~ig~-lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~g~~~~~~~ 186 (380)
++.-++.+++.+.+...+-+.+.-+ +|..++|..+.+..+.-+++ .....+.+++-..
T Consensus 59 ig~iLIGNNLvNilasalaT~~~irl~Gd~GvaIAt~~mT~vilvF------------------aEVlPKt~Aa~~p--- 117 (423)
T COG4536 59 IGTILIGNNLVNILASALATILGIRLYGDAGVAIATGVLTFVILVF------------------AEVLPKTIAALYP--- 117 (423)
T ss_pred eeeeeecccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH------------------HHhcchHHhhhCh---
Confidence 3555677777777776665554444 78777654444333322221 0122233333333
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCC
Q 039534 187 HGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPAD 234 (380)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 234 (380)
+++.......+....-+..|+..++-.+..-++++|+...+
T Consensus 118 -------erva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~~ 158 (423)
T COG4536 118 -------ERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINLD 158 (423)
T ss_pred -------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 77777777777777888888888889999999999986443
No 45
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=34.74 E-value=3.2e+02 Score=26.03 Aligned_cols=39 Identities=23% Similarity=0.180 Sum_probs=34.1
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cC
Q 039534 96 FKFDELGLEIWSIALPAALALAADPIASLIDTAFVGH-LG 134 (380)
Q Consensus 96 ~~~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~-lg 134 (380)
.......+.++++.+|+......+.+..-+-..++.+ +|
T Consensus 228 ~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~ 267 (345)
T PF07260_consen 228 KGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLS 267 (345)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3445567999999999999999999999999999999 54
No 46
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=34.36 E-value=1.8e+02 Score=25.51 Aligned_cols=44 Identities=20% Similarity=0.150 Sum_probs=26.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHH
Q 039534 194 KKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAEN 243 (380)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~ 243 (380)
++-++..++.....+++ .+++.++++.++++|+.+-+ ..+.++.
T Consensus 34 ~~r~~ia~~a~~~a~~i----ll~f~~~G~~iL~~fgIsl~--af~IaGG 77 (203)
T PF01914_consen 34 KERRRIARRASIIAFII----LLIFAFFGQLILNFFGISLP--AFRIAGG 77 (203)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCHH--HHHHHHH
Confidence 55555555555444433 44477799999999987532 4444444
No 47
>PRK10739 putative antibiotic transporter; Provisional
Probab=33.04 E-value=2e+02 Score=25.13 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=27.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHH
Q 039534 194 KKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENF 244 (380)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~ 244 (380)
++-++..++.....+.+ .+++.++++.++++|+.+- +..+.|+..
T Consensus 34 ~~r~~ia~~a~~~a~~i----ll~f~~~G~~iL~~fGIsl--~afrIAGGi 78 (197)
T PRK10739 34 KRRRAIMIRELLIALLV----MLVFLFAGEKILAFLNLRT--ETVSISGGI 78 (197)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCH--HHHHHHHHH
Confidence 55555565555444433 3457789999999999752 345555543
No 48
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=29.38 E-value=5.3e+02 Score=27.31 Aligned_cols=20 Identities=10% Similarity=0.212 Sum_probs=12.1
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 039534 194 KKLLPSISTSLALAAGIGIA 213 (380)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~ 213 (380)
++..+.+++...+..++.++
T Consensus 286 ~~~~~aL~~g~~vs~~l~~i 305 (682)
T PF03030_consen 286 KDPMKALRRGYIVSSILSII 305 (682)
T ss_dssp GGHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 45666677777666554444
No 49
>PRK11111 hypothetical protein; Provisional
Probab=26.28 E-value=2.6e+02 Score=24.84 Aligned_cols=44 Identities=23% Similarity=0.105 Sum_probs=25.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHH
Q 039534 194 KKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAEN 243 (380)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~ 243 (380)
++-++..++.....+. ..+++.+++++++.+|+.+-+ ..+.|+.
T Consensus 40 ~~r~~ia~~a~l~a~~----ill~f~~~G~~iL~~fGIsl~--afrIaGG 83 (214)
T PRK11111 40 AERNKTNLTANLSVAI----ILLISLFLGDFILNLFGISID--SFRIAGG 83 (214)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCCHH--HHHHHHH
Confidence 4444455555444332 334467899999999997522 4444444
No 50
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=25.92 E-value=2.6e+02 Score=24.46 Aligned_cols=44 Identities=11% Similarity=-0.045 Sum_probs=26.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHH
Q 039534 194 KKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAEN 243 (380)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~ 243 (380)
++-++...+.....+. ..+++.++++.++++|+.+-+ ..+.++.
T Consensus 37 ~~r~~ia~~~~l~a~~----ill~f~~~G~~iL~~fgIsl~--afrIaGG 80 (201)
T TIGR00427 37 AERNKIAKKANISSFI----ILLIFLVFGDTILKLFGISID--AFRIAGG 80 (201)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCCHH--HHHHHHH
Confidence 4444555555444333 334577799999999987522 4444443
No 51
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.20 E-value=1.1e+02 Score=24.66 Aligned_cols=8 Identities=0% Similarity=-0.130 Sum_probs=3.3
Q ss_pred HHHHhccc
Q 039534 319 IWKLSDNV 326 (380)
Q Consensus 319 ~~~~~~~~ 326 (380)
.|.++|++
T Consensus 85 ~y~irR~~ 92 (122)
T PF01102_consen 85 SYCIRRLR 92 (122)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHh
Confidence 34444433
No 52
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=25.03 E-value=4e+02 Score=22.05 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=16.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 039534 194 KKLLPSISTSLALAAGIGIAEALALS 219 (380)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (380)
++-++..++....++.++++......
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (163)
T PF04235_consen 11 EEHRKLLRRLLLIGLAVGLPLALLSA 36 (163)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777777777777666444
No 53
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=23.03 E-value=7.4e+02 Score=24.44 Aligned_cols=28 Identities=21% Similarity=0.052 Sum_probs=18.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 039534 192 QGKKLLPSISTSLALAAGIGIAEALALS 219 (380)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (380)
+.+++++..+.+...+..+....++..+
T Consensus 224 s~~~i~~v~~~~~~~~~~iy~~~g~~GY 251 (411)
T KOG1305|consen 224 SVKKIQRVSNIAIILATLIYLLTGLFGY 251 (411)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5566777777777777666666555443
No 54
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=20.79 E-value=6.2e+02 Score=22.75 Aligned_cols=92 Identities=12% Similarity=0.104 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccC
Q 039534 100 ELGLEIWSIALPAALALAADPIASLIDTAFVGH-LGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGS 178 (380)
Q Consensus 100 ~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~-lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~ 178 (380)
+.++.+-|...|++...+.-.....+....+.+ +|.++--..++. | -++++++.. -+++..
T Consensus 81 kq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~Sl~-------------P-kSvTTpiAm----~vs~~i 142 (230)
T COG1346 81 KQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELILSLL-------------P-KSVTTPIAM----EVSESI 142 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhc-------------c-cccccHHHH----HHHHhc
Confidence 344667777889999999999999999988888 676543333322 3 666777766 455544
Q ss_pred CCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCC
Q 039534 179 DDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGI 231 (380)
Q Consensus 179 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 231 (380)
|.-.. . +. .+.+...++...+++.+++.+..
T Consensus 143 GGip~---------------l---ta----v~Vi~tGi~Gavlg~~llk~~~i 173 (230)
T COG1346 143 GGIPA---------------L---TA----VFVILTGILGAVLGPLLLKLLRI 173 (230)
T ss_pred CCchH---------------H---HH----HHHHHHHHHHHHHHHHHHHHhcc
Confidence 43332 1 11 22233344456688899999874
No 55
>PF04138 GtrA: GtrA-like protein; InterPro: IPR007267 Members of this entry belong to the GtrA family and are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane []. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyses the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b) []. This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and Listeria monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose [].; GO: 0000271 polysaccharide biosynthetic process, 0006810 transport, 0016021 integral to membrane
Probab=20.74 E-value=3.9e+02 Score=20.41 Aligned_cols=42 Identities=17% Similarity=0.009 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 039534 278 IGAGNLINAILDPILIFFFHFGIGGAAIATVISEYLIAFILIWKL 322 (380)
Q Consensus 278 ~i~~~~i~i~l~~~li~~~~~Gi~Gaa~a~~is~~~~~~l~~~~~ 322 (380)
+.++.+++..+-.++.... -....+|..++..+..+..++.-
T Consensus 6 g~~~~~v~~~~~~~l~~~~---~~~~~~A~~ia~~~~~~~~f~ln 47 (117)
T PF04138_consen 6 GVIGTLVDFGVFYLLLEFL---GLNYLLANVIAFIVAIIFNFILN 47 (117)
T ss_pred eHHHHHHHHHHHHHHHHHH---CcCHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777655555332 23466777777777766664433
No 56
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=20.65 E-value=7e+02 Score=27.67 Aligned_cols=73 Identities=12% Similarity=0.036 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhccCCchHHH
Q 039534 197 LPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGA-PPIVIALAAQGAFRGFMDTKTPL 275 (380)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~-~~~~l~~~~~~~l~g~g~~~~~~ 275 (380)
++++..++..+++....++.++......+...++.+++ -.+. -+++++. ....+..+.. ..+|.+|....-
T Consensus 931 ~k~y~ltFi~SIiwIsi~SyilV~~at~IG~vlGIse~----VmGl---TfLA~GTSIPDlisSviv-ArkG~gdMAVan 1002 (1096)
T TIGR00927 931 RKFFVITFLGSIMWIAMFSYLMVWWAHQVGETIGISEE----IMGL---TILAAGTSIPDLITSVIV-ARKGLGDMAVSS 1002 (1096)
T ss_pred cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhcCCChh----hhhh---hhhhhhcccHHHHHHHHH-HHccCCcceeee
Confidence 34555556655544444454466667778888887544 1122 2333332 3333333333 347888766544
Q ss_pred HH
Q 039534 276 YA 277 (380)
Q Consensus 276 ~~ 277 (380)
.+
T Consensus 1003 ~i 1004 (1096)
T TIGR00927 1003 SV 1004 (1096)
T ss_pred cc
Confidence 43
Done!