Query 039534
Match_columns 380
No_of_seqs 261 out of 1910
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 18:22:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039534.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039534hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 99.9 8.5E-26 2.9E-30 222.7 20.6 256 99-375 8-274 (460)
2 3mkt_A Multi antimicrobial ext 99.9 2.4E-21 8.3E-26 190.8 21.5 291 13-327 142-448 (460)
3 2k1k_A Ephrin type-A receptor 43.3 33 0.0011 20.5 3.7 23 300-322 13-35 (38)
4 2ks1_B Epidermal growth factor 33.5 80 0.0027 19.5 4.4 28 300-327 13-40 (44)
5 2l2t_A Receptor tyrosine-prote 29.6 98 0.0033 19.1 4.3 10 317-326 29-38 (44)
6 2jwa_A Receptor tyrosine-prote 22.5 1.3E+02 0.0046 18.5 3.9 8 319-326 32-39 (44)
7 1nkz_B Light-harvesting protei 14.9 1.6E+02 0.0056 17.8 3.0 34 190-223 5-38 (41)
8 1lgh_B LH II, B800/850, light 9.5 2.1E+02 0.0072 17.7 2.3 33 190-222 10-42 (45)
9 1dx7_A Light-harvesting protei 6.8 1.9E+02 0.0066 18.1 1.3 33 191-223 14-46 (48)
10 1wrg_A LH-1, light-harvesting 5.8 2.7E+02 0.0093 18.0 1.6 35 190-224 13-47 (55)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.94 E-value=8.5e-26 Score=222.75 Aligned_cols=256 Identities=17% Similarity=0.262 Sum_probs=225.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHhhccC
Q 039534 99 DELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQAVKSQGS 178 (380)
Q Consensus 99 ~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~~va~~~ 178 (380)
++..|++++.++|.+++++...+++.+|+.+++++|++++++++++.++..+. .....++..+..+.+++++
T Consensus 8 ~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~--------~~~~~g~~~~~~~~is~~~ 79 (460)
T 3mkt_A 8 KKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS--------ILFGVGLLMALVPVVAQLN 79 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH--------HHHHHHHHHHHGGGCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 35679999999999999999999999999999999999999999999986654 2334556667788999999
Q ss_pred CCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHHHHHHHHHHhHHHHHHH
Q 039534 179 DDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAENFLNLRAFGAPPIVIA 258 (380)
Q Consensus 179 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~l~ 258 (380)
|++|+ ++.++.+++++.+.++++++++++ +.+.+++..+++. |++..+.+..|+++++++.++..+.
T Consensus 80 g~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~~~~~~~~~~l~i~~~~~~~~~~~ 146 (460)
T 3mkt_A 80 GAGRQ----------HKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDV--EEAMATKTVGYMHAVIFAVPAYLLF 146 (460)
T ss_dssp SSSST----------TTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSS--TTHHHHHHHHHHTTGGGHHHHHHHH
T ss_pred cCCCh----------hHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888 899999999999999999998875 7888999988874 5678899999999999999999999
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHh-h---cCChhHHHHHHHHHHHHHHHHHHHHHhccccccC----
Q 039534 259 LAAQGAFRGFMDTKTPLYAIGAGNLINAILDPILIFF-F---HFGIGGAAIATVISEYLIAFILIWKLSDNVLLMS---- 330 (380)
Q Consensus 259 ~~~~~~l~g~g~~~~~~~~~i~~~~i~i~l~~~li~~-~---~~Gi~Gaa~a~~is~~~~~~l~~~~~~~~~~~~~---- 330 (380)
....+++|+.||++.+++.++++.++|+++++++++. + ++|+.|+++|+.+++++..++.+++++++++..+
T Consensus 147 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (460)
T 3mkt_A 147 QALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVF 226 (460)
T ss_dssp HHHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCS
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhh
Confidence 9999999999999999999999999999999999975 3 7999999999999999999998888876544221
Q ss_pred ---CCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHccCchhhh
Q 039534 331 ---PDIDGRRVVHYLKSGGLLIGRTIAVLLTMTLATSMAAREGPIPWL 375 (380)
Q Consensus 331 ---~~~~~~~~~~~l~~~~p~~~~~l~~~~~~~~~~~~~~~lG~~~~~ 375 (380)
.+.+++.++++++.+.|...+.+.+...+.+.+.+++++|+++.+
T Consensus 227 ~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va 274 (460)
T 3mkt_A 227 ETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVA 274 (460)
T ss_dssp CCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHH
T ss_pred hcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHH
Confidence 245677789999999999999999999999999999999887743
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.88 E-value=2.4e-21 Score=190.82 Aligned_cols=291 Identities=14% Similarity=0.036 Sum_probs=223.0
Q ss_pred hhhhccCCCcccccCCccccCCCCCcccccccccccccccccCCCCCCCCCCCccCCCCCCCCcccccCchhhhhHHHHh
Q 039534 13 LCSMHSSSSSYYYNSKQTKSSSTPGKFRIFNRRNLTCSARLKSAPHKKKTASTSLQTSPPDPSRFSLSGSFSLINIIARL 92 (380)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (380)
+.++..+.+++..+.++++.|...+....+.+....+.+.....+.++. ...........+ ......-..-...+.
T Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~-g~~g~a~a~~i~---~~~~~~~~~~~~~~~ 217 (460)
T 3mkt_A 142 AYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPEL-GGVGCGVATAIV---YWIMLLLLLFYIVTS 217 (460)
T ss_dssp HHHHHHHHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCC-HHHHHHHHHHHH---HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccc-chhhHHHHHHHH---HHHHHHHHHHHHHhC
Confidence 4456667788999999999999888888777666443322110000000 000000000000 000000000000000
Q ss_pred ---------hc-ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 039534 93 ---------SD-GFKFDELGLEIWSIALPAALALAADPIASLIDTAFVGHLGSVELAAVGVSVSVFNLVSKLFNVPLLNI 162 (380)
Q Consensus 93 ---------~~-~~~~~~~~k~il~~a~P~~~~~l~~~l~~~id~~~ig~lg~~~laa~~~~~~l~~~~~~~~~~~l~~~ 162 (380)
++ ...+++..|+++++++|..++.+...+...+|+.+++++|++++++++++.++.++.. ..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~--------~~ 289 (460)
T 3mkt_A 218 KRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVF--------MF 289 (460)
T ss_dssp SSCCCCCCSCCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHH--------HH
T ss_pred cchhhhhhhhcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH--------HH
Confidence 00 1234566799999999999999999999999999999999999999999999988873 34
Q ss_pred hhhhhhhhHHHhhccCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCCcccHHHHH
Q 039534 163 TTSFVAEEQAVKSQGSDDGSSQIDHGVEQQGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPADSPMRVPAE 242 (380)
Q Consensus 163 ~~~l~~~~~~~va~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~ 242 (380)
..+++.+.+|.+++++|++|. +++++..+++..+.+.++++++++++++++++..++.. |+++.+.+.
T Consensus 290 ~~~~~~a~~p~i~~~~g~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~~~~~ 357 (460)
T 3mkt_A 290 PMSIGAAVSIRVGHKLGEQDT----------KGAAIAANVGLMTGLATACITALLTVLFREQIALLYTE--NQVVVALAM 357 (460)
T ss_dssp HHHHHHHHHHHHHHHHHSSCC----------CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC--CSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHH
Confidence 667778889999999999988 99999999999999999999999999999999999874 567899999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhccCCchHHHHHHHHHH-HHHHHHHHHHHHh----hc-CChhHHHHHHHHHHHHHHH
Q 039534 243 NFLNLRAFGAPPIVIALAAQGAFRGFMDTKTPLYAIGAGN-LINAILDPILIFF----FH-FGIGGAAIATVISEYLIAF 316 (380)
Q Consensus 243 ~~l~~~~~~~~~~~l~~~~~~~l~g~g~~~~~~~~~i~~~-~i~i~l~~~li~~----~~-~Gi~Gaa~a~~is~~~~~~ 316 (380)
.++++++++.++.+++.+..+++++.||++.++++++++. ++|+++++++++. ++ +|+.|+++|+.+++.+..+
T Consensus 358 ~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~ 437 (460)
T 3mkt_A 358 QLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAAL 437 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988 9999999999886 56 9999999999999999988
Q ss_pred HHHHHHhcccc
Q 039534 317 ILIWKLSDNVL 327 (380)
Q Consensus 317 l~~~~~~~~~~ 327 (380)
+..++++|+.+
T Consensus 438 ~~~~~~~~~~~ 448 (460)
T 3mkt_A 438 MLGQRLYWLQK 448 (460)
T ss_dssp HHHSSSSSSCC
T ss_pred HHHHHHHHHHH
Confidence 87776655433
No 3
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=43.34 E-value=33 Score=20.47 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 039534 300 IGGAAIATVISEYLIAFILIWKL 322 (380)
Q Consensus 300 i~Gaa~a~~is~~~~~~l~~~~~ 322 (380)
+.|+.++.+++-.+...+.+++.
T Consensus 13 IAGiVvG~v~gv~li~~l~~~~~ 35 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVFRS 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHHHHHHHe
Confidence 45666666655555554444443
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=33.55 E-value=80 Score=19.47 Aligned_cols=28 Identities=7% Similarity=0.116 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccc
Q 039534 300 IGGAAIATVISEYLIAFILIWKLSDNVL 327 (380)
Q Consensus 300 i~Gaa~a~~is~~~~~~l~~~~~~~~~~ 327 (380)
|.+..++-++.-.+..+..++++++++.
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence 4444444444444444444555555443
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=29.58 E-value=98 Score=19.09 Aligned_cols=10 Identities=0% Similarity=-0.097 Sum_probs=4.5
Q ss_pred HHHHHHhccc
Q 039534 317 ILIWKLSDNV 326 (380)
Q Consensus 317 l~~~~~~~~~ 326 (380)
..++++++++
T Consensus 29 ~~~~~~RRRr 38 (44)
T 2l2t_A 29 TFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHhhhhh
Confidence 3344555443
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=22.46 E-value=1.3e+02 Score=18.48 Aligned_cols=8 Identities=0% Similarity=-0.288 Sum_probs=3.9
Q ss_pred HHHHhccc
Q 039534 319 IWKLSDNV 326 (380)
Q Consensus 319 ~~~~~~~~ 326 (380)
.+|++|++
T Consensus 32 ~~~~RRR~ 39 (44)
T 2jwa_A 32 GILIKRRQ 39 (44)
T ss_dssp HHHHHHHC
T ss_pred Hhheehhh
Confidence 44555543
No 7
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=14.87 E-value=1.6e+02 Score=17.78 Aligned_cols=34 Identities=9% Similarity=0.113 Sum_probs=25.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHH
Q 039534 190 EQQGKKLLPSISTSLALAAGIGIAEALALSFGSG 223 (380)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (380)
+++.++..+.+.+++.....+.+..=++.+...|
T Consensus 5 ~~EA~EfH~~~~~~~~~F~~iA~vAH~l~w~wrP 38 (41)
T 1nkz_B 5 AEQSEELHKYVIDGTRVFLGLALVAHFLAFSATP 38 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3466888889999988888877777776665544
No 8
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=9.47 E-value=2.1e+02 Score=17.67 Aligned_cols=33 Identities=6% Similarity=0.011 Sum_probs=24.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcH
Q 039534 190 EQQGKKLLPSISTSLALAAGIGIAEALALSFGS 222 (380)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (380)
+++.++..+.+.+++.....+.+..=++.+...
T Consensus 10 ~~EA~EfH~~~~~~~~~F~~iA~vAH~L~~~wr 42 (45)
T 1lgh_B 10 EEEAIAVHDQFKTTFSAFIILAAVAHVLVWVWK 42 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 446688888899988888777777666555543
No 9
>1dx7_A Light-harvesting protein B-875-beta chain; bacteriochlorophyll binding, membrane protein, photosynthesis; NMR {Rhodobacter sphaeroides} SCOP: f.3.1.1 PDB: 1jo5_A
Probab=6.79 E-value=1.9e+02 Score=18.14 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=23.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHH
Q 039534 191 QQGKKLLPSISTSLALAAGIGIAEALALSFGSG 223 (380)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (380)
++.++..+.+.+++.....+.+..=++.+...|
T Consensus 14 ~EA~EfH~~~~~~~~~F~~iA~vAH~l~w~wrP 46 (48)
T 1dx7_A 14 EQAQELHSVYMSGLWLFSAVAIVAHLAVYIWRP 46 (48)
T ss_dssp HHHHHHTHHHHHHHHHHTTHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456888888888888877777776666655443
No 10
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=5.77 E-value=2.7e+02 Score=17.98 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=24.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHH
Q 039534 190 EQQGKKLLPSISTSLALAAGIGIAEALALSFGSGF 224 (380)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (380)
+++.++..+++.+++...+.+.++.=++.+...|+
T Consensus 13 ~~EAqEfH~~f~~~~~~F~~iAvvAH~L~~~wrPW 47 (55)
T 1wrg_A 13 EGEAKEFHKIFTSSILVFFGVAAFAHLLVWIWRPW 47 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34668888888888888777777766655555443
Done!