Query 039534
Match_columns 380
No_of_seqs 261 out of 1910
Neff 8.9
Searched_HMMs 13730
Date Mon Mar 25 18:22:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039534.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039534hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 18.8 2.3E+02 0.017 23.1 20.1 26 297-322 406-431 (447)
2 d1lghb_ f.3.1.1 (B:) Light-har 10.9 84 0.0061 17.8 2.3 33 190-222 8-40 (43)
3 d1wt8a1 g.3.7.2 (A:1-31) Bmkx 9.2 43 0.0031 16.8 0.5 10 17-26 20-29 (31)
4 d1iwga8 f.35.1.1 (A:513-566,A: 8.9 3.8E+02 0.028 20.2 11.4 24 339-362 152-175 (222)
5 d1nkzb_ f.3.1.1 (B:) Light-har 7.4 1.9E+02 0.014 15.8 2.8 32 192-223 7-38 (41)
6 d2qam01 g.41.8.5 (0:1-56) Ribo 6.7 84 0.0061 18.9 1.2 13 17-29 41-53 (56)
7 d1wfla_ g.80.1.1 (A:) Zinc fin 5.1 1E+02 0.0074 19.7 0.9 22 12-33 47-72 (74)
8 d1jo5a_ f.3.1.1 (A:) Light-har 4.5 2.2E+02 0.016 16.4 2.0 34 190-223 13-46 (48)
9 d2d5ba1 a.27.1.1 (A:349-500) M 3.6 4.3E+02 0.031 18.3 3.8 43 192-234 82-124 (152)
10 d1ijdb_ f.3.1.1 (B:) Light-har 3.0 4.5E+02 0.033 14.1 3.2 28 192-219 8-35 (40)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=18.80 E-value=2.3e+02 Score=23.10 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=14.0
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHH
Q 039534 297 HFGIGGAAIATVISEYLIAFILIWKL 322 (380)
Q Consensus 297 ~~Gi~Gaa~a~~is~~~~~~l~~~~~ 322 (380)
.+|..+..+.......+..++.+...
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 46766666555555555544444443
No 2
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=10.89 E-value=84 Score=17.79 Aligned_cols=33 Identities=6% Similarity=0.011 Sum_probs=24.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcH
Q 039534 190 EQQGKKLLPSISTSLALAAGIGIAEALALSFGS 222 (380)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (380)
+++.++..+.+.+++.....+.+..=++.+...
T Consensus 8 ~~EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wr 40 (43)
T d1lghb_ 8 EEEAIAVHDQFKTTFSAFIILAAVAHVLVWVWK 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346688888999998888777777666655543
No 3
>d1wt8a1 g.3.7.2 (A:1-31) Bmkx {Chinese scorpion (Buthus martensi karsch) [TaxId: 34649]}
Probab=9.24 E-value=43 Score=16.80 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=7.6
Q ss_pred ccCCCccccc
Q 039534 17 HSSSSSYYYN 26 (380)
Q Consensus 17 ~~~~~~~~~~ 26 (380)
-||-+||+.|
T Consensus 20 isckngycqg 29 (31)
T d1wt8a1 20 ISCKNGYCQG 29 (31)
T ss_dssp CCCCSEECTT
T ss_pred eeecCccccc
Confidence 3788999865
No 4
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=8.91 E-value=3.8e+02 Score=20.23 Aligned_cols=24 Identities=8% Similarity=-0.059 Sum_probs=14.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Q 039534 339 VHYLKSGGLLIGRTIAVLLTMTLA 362 (380)
Q Consensus 339 ~~~l~~~~p~~~~~l~~~~~~~~~ 362 (380)
.-..+...|+....+....++.-+
T Consensus 152 ~a~~~~~~~i~~t~ltti~gf~pl 175 (222)
T d1iwga8 152 DAVRMRLRPILMTSLAFILGVMPL 175 (222)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHH
Confidence 344455677777777766655333
No 5
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=7.38 E-value=1.9e+02 Score=15.79 Aligned_cols=32 Identities=9% Similarity=0.102 Sum_probs=21.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHH
Q 039534 192 QGKKLLPSISTSLALAAGIGIAEALALSFGSG 223 (380)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (380)
+.+++.+.+-.+.++...+.+..=++.+...|
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tP 38 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATP 38 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCc
Confidence 45778888888888877777666555444433
No 6
>d2qam01 g.41.8.5 (0:1-56) Ribosomal protein L32p {Escherichia coli [TaxId: 562]}
Probab=6.67 E-value=84 Score=18.87 Aligned_cols=13 Identities=31% Similarity=0.600 Sum_probs=9.3
Q ss_pred ccCCCcccccCCc
Q 039534 17 HSSSSSYYYNSKQ 29 (380)
Q Consensus 17 ~~~~~~~~~~~~~ 29 (380)
|.|-||||=|.+-
T Consensus 41 ~vC~cG~Ykgr~V 53 (56)
T d2qam01 41 HITADGYYRGRKV 53 (56)
T ss_dssp SCCTTSCCSSSCC
T ss_pred EECCCCCCCCEEe
Confidence 5688898877653
No 7
>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.06 E-value=1e+02 Score=19.69 Aligned_cols=22 Identities=27% Similarity=0.708 Sum_probs=13.2
Q ss_pred hhhhhc----cCCCcccccCCccccC
Q 039534 12 LLCSMH----SSSSSYYYNSKQTKSS 33 (380)
Q Consensus 12 ~~~~~~----~~~~~~~~~~~~~~~~ 33 (380)
.||+.| ..-|.|.|...-.+++
T Consensus 47 ~FC~~HR~pe~H~CtfDyK~~g~~~~ 72 (74)
T d1wfla_ 47 LFCGLHRYSDKHNCPYDYKAEASGPS 72 (74)
T ss_dssp EECSSSCSTTTTTCCCCGGGTSSCCC
T ss_pred EehhhcCCCcCcCCCCcccccccCCC
Confidence 466666 4446677766655554
No 8
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.54 E-value=2.2e+02 Score=16.35 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=24.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHH
Q 039534 190 EQQGKKLLPSISTSLALAAGIGIAEALALSFGSG 223 (380)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (380)
+.+.++..+.+.+++.....+.+..=++.+...|
T Consensus 13 ~~EA~E~H~~~~~g~~~F~~iAvvAH~L~w~wrP 46 (48)
T d1jo5a_ 13 DEQAQELHSVYMSGLWLFSAVAIVAHLAVYIWRP 46 (48)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456788888888888877777776666665443
No 9
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}
Probab=3.64 E-value=4.3e+02 Score=18.34 Aligned_cols=43 Identities=9% Similarity=-0.010 Sum_probs=28.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCCCC
Q 039534 192 QGKKLLPSISTSLALAAGIGIAEALALSFGSGFLMNIMGIPAD 234 (380)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 234 (380)
|.++++.++..++...-.+++.+..++=-.++.|...++.+++
T Consensus 82 d~~~~~~vl~~~l~~lr~l~ilL~P~mP~~~~ki~~~Lg~~~~ 124 (152)
T d2d5ba1 82 EPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKEE 124 (152)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCCSS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCCCcc
Confidence 4566666666666666556666665555677778888876533
No 10
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=2.95 E-value=4.5e+02 Score=14.12 Aligned_cols=28 Identities=11% Similarity=0.010 Sum_probs=19.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 039534 192 QGKKLLPSISTSLALAAGIGIAEALALS 219 (380)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (380)
+.+++.+.+-.+.++...+.+..=++.+
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~ 35 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAF 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 4577888888888877766666555443
Done!