BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039535
(769 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 79/185 (42%), Gaps = 23/185 (12%)
Query: 353 ACETEKEKINFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDF 412
+ E I+ ++ + +K ++ NVR L+L N++ +S + +L L L
Sbjct: 35 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTG 94
Query: 413 NRELMMIAGGYFQFMPSLKVL----------------KISNIGYFNVL-----KLPLGM- 450
N +L + G F + +LK L K++N+ Y N+ LP G+
Sbjct: 95 N-QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF 153
Query: 451 SKLGSLELLDISHSSIEELPEEXXXXXXXXXXXXRWTDVLNKIPRQLISNLSRVRVLRMF 510
KL +L LD+S++ ++ LPE + + L +P + L+ ++ + +
Sbjct: 154 DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 213
Query: 511 ATGYD 515
+D
Sbjct: 214 DNPWD 218
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 23/141 (16%)
Query: 353 ACETEKEKINFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDF 412
+ E I+ ++ + +K ++ NVR L+L N++ +S + +L L L
Sbjct: 35 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTG 94
Query: 413 NRELMMIAGGYFQFMPSLKVL----------------KISNIGYF----NVLK-LPLGM- 450
N +L + G F + +LK L K++N+ Y N L+ LP G+
Sbjct: 95 N-QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVF 153
Query: 451 SKLGSLELLDISHSSIEELPE 471
KL +L LD+ ++ ++ LPE
Sbjct: 154 DKLTNLTRLDLDNNQLQSLPE 174
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.7 bits (73), Expect = 0.73, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 360 KINFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNR--ELM 417
KI L +G LK + G ++++ L L QI ++ + +L L+LD N+ +
Sbjct: 92 KITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS 151
Query: 418 MIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEEL 469
+AG + +L+ L I N N L +SKL +L D S I L
Sbjct: 152 PLAG-----LTNLQYLSIGN-NQVNDLTPLANLSKLTTLRADDNKISDISPL 197
>pdb|1MMO|G Chain G, Crystal Structure Of A Bacterial Non-Haem Iron Hydroxylase
That Catalyses The Biological Oxidation Of Methane
pdb|1MMO|H Chain H, Crystal Structure Of A Bacterial Non-Haem Iron Hydroxylase
That Catalyses The Biological Oxidation Of Methane
pdb|1MTY|G Chain G, Methane Monooxygenase Hydroxylase From Methylococcus
Capsulatus (Bath)
pdb|1MTY|H Chain H, Methane Monooxygenase Hydroxylase From Methylococcus
Capsulatus (Bath)
Length = 162
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 43/112 (38%), Gaps = 14/112 (12%)
Query: 663 LEEIISVGKFAEVPEM-----MGHLSPFENLQNLDLSYLLALKSIYWKPLPFTYLKEMVV 717
+ +I V + EM M H +PF N LD YL + K LK
Sbjct: 13 VNKIAHVNTLEKAAEMLKQFRMDHTTPFRNSYELDNDYLWIEAKLEEK---VAVLKARAF 69
Query: 718 NGCDQLKKLPLDSSCAEERKFVIRGEAHWWNCL--EWEDEATQIAFRSCFQP 767
N D K ++ E+ K V+ G N +WE E I FR ++P
Sbjct: 70 NEVDFRHK----TAFGEDAKSVLDGTVAKMNAAKDKWEAEKIHIGFRQAYKP 117
>pdb|1FZ4|E Chain E, Methane Monooxygenase Hydroxylase, Form Iii Soaked At Ph
8.5 (0.1 M Tris)
pdb|1FZ4|F Chain F, Methane Monooxygenase Hydroxylase, Form Iii Soaked At Ph
8.5 (0.1 M Tris)
pdb|1FZ5|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Crystallized
Anaerobically From Reduced Enzyme
pdb|1FZ5|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Crystallized
Anaerobically From Reduced Enzyme
pdb|1FZ7|E Chain E, Methane Monooxygenase Hydroxylase, Form Iii Soaked In 0.9
M Ethanol
pdb|1FZ7|F Chain F, Methane Monooxygenase Hydroxylase, Form Iii Soaked In 0.9
M Ethanol
pdb|1FYZ|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Reduced By
Soaking
pdb|1FYZ|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Reduced By
Soaking
pdb|1FZ0|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Grown Anaerobically
pdb|1FZ0|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Grown Anaerobically
pdb|1FZ1|E Chain E, Methane Monooxygenase Hydroxylase, Form Iii Oxidized
pdb|1FZ1|F Chain F, Methane Monooxygenase Hydroxylase, Form Iii Oxidized
pdb|1FZ2|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Generated By Crystal Soaking
pdb|1FZ2|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Generated By Crystal Soaking
pdb|1FZ3|E Chain E, Methane Monooxygenase Hydroxylase, Form Iii Soak At Ph 6.2
(0.1 M Pipes)
pdb|1FZ3|F Chain F, Methane Monooxygenase Hydroxylase, Form Iii Soak At Ph 6.2
(0.1 M Pipes)
pdb|1FZ6|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Soaked In 1 M
Methanol
pdb|1FZ6|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Soaked In 1 M
Methanol
pdb|1FZ8|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Dibromomethane
pdb|1FZ8|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Dibromomethane
pdb|1FZ9|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Iodoethane
pdb|1FZ9|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Iodoethane
pdb|1FZH|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Pressurized
With Xenon Gas
pdb|1FZH|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Pressurized
With Xenon Gas
pdb|1FZI|E Chain E, Methane Monooxygenase Hydroxylase, Form I Pressurized With
Xenon Gas
pdb|1FZI|F Chain F, Methane Monooxygenase Hydroxylase, Form I Pressurized With
Xenon Gas
pdb|1XU5|E Chain E, Soluble Methane Monooxygenase Hydroxylase-phenol Soaked
pdb|1XU5|F Chain F, Soluble Methane Monooxygenase Hydroxylase-phenol Soaked
pdb|1XVB|E Chain E, Soluble Methane Monooxygenase Hydroxylase: 6-Bromohexanol
Soaked Structure
pdb|1XVB|F Chain F, Soluble Methane Monooxygenase Hydroxylase: 6-Bromohexanol
Soaked Structure
pdb|1XVC|E Chain E, Soluble Methane Monooxygenase Hydroxylase: 8-Bromooctanol
Soaked Structure
pdb|1XVC|F Chain F, Soluble Methane Monooxygenase Hydroxylase: 8-Bromooctanol
Soaked Structure
pdb|1XVD|E Chain E, Soluble Methane Monooxygenase Hydroxylase: 4-Fluorophenol
Soaked Structure
pdb|1XVD|F Chain F, Soluble Methane Monooxygenase Hydroxylase: 4-Fluorophenol
Soaked Structure
pdb|1XVE|E Chain E, Soluble Methane Monooxygenase Hydroxylase: 3-bromo-3-
Butenol Soaked Structure
pdb|1XVE|F Chain F, Soluble Methane Monooxygenase Hydroxylase: 3-bromo-3-
Butenol Soaked Structure
pdb|1XVF|E Chain E, Soluble Methane Monooxygenase Hydroxylase: Chloropropanol
Soaked Structure
pdb|1XVF|F Chain F, Soluble Methane Monooxygenase Hydroxylase: Chloropropanol
Soaked Structure
pdb|1XVG|E Chain E, Soluble Methane Monooxygenase Hydroxylase: Bromoethanol
Soaked Structure
pdb|1XVG|F Chain F, Soluble Methane Monooxygenase Hydroxylase: Bromoethanol
Soaked Structure
pdb|1XU3|E Chain E, Soluble Methane Monooxygenase Hydroxylase-Soaked With
Bromophenol
pdb|1XU3|F Chain F, Soluble Methane Monooxygenase Hydroxylase-Soaked With
Bromophenol
pdb|4GAM|C Chain C, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
pdb|4GAM|H Chain H, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
pdb|4GAM|M Chain M, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
pdb|4GAM|R Chain R, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
Length = 170
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Query: 679 MGHLSPFENLQNLDLSYLLALKSIYWKPLPFTYLKEMVVNGCDQLKKLPLDSSCAEERKF 738
M H +PF N LD YL + K LK N D K ++ E+ K
Sbjct: 37 MDHTTPFRNSYELDNDYLWIEAKLEEK---VAVLKARAFNEVDFRHK----TAFGEDAKS 89
Query: 739 VIRGEAHWWNCL--EWEDEATQIAFRSCFQP 767
V+ G N +WE E I FR ++P
Sbjct: 90 VLDGTVAKMNAAKDKWEAEKIHIGFRQAYKP 120
>pdb|1XMF|E Chain E, Structure Of Mn(Ii)-Soaked Apo Methane Monooxygenase
Hydroxylase Crystals From M. Capsulatus (Bath)
pdb|1XMF|F Chain F, Structure Of Mn(Ii)-Soaked Apo Methane Monooxygenase
Hydroxylase Crystals From M. Capsulatus (Bath)
pdb|1XMG|E Chain E, Crystal Structure Of Apo Methane Monooxygenase Hydroxylase
From M. Capsulatus (Bath)
pdb|1XMG|F Chain F, Crystal Structure Of Apo Methane Monooxygenase Hydroxylase
From M. Capsulatus (Bath)
pdb|1XMH|E Chain E, Structure Of Co(Ii) Reconstituted Methane Monooxygenase
Hydroxylase From M. Capsulatus (Bath)
pdb|1XMH|F Chain F, Structure Of Co(Ii) Reconstituted Methane Monooxygenase
Hydroxylase From M. Capsulatus (Bath)
Length = 169
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Query: 679 MGHLSPFENLQNLDLSYLLALKSIYWKPLPFTYLKEMVVNGCDQLKKLPLDSSCAEERKF 738
M H +PF N LD YL + K LK N D K ++ E+ K
Sbjct: 36 MDHTTPFRNSYELDNDYLWIEAKLEEK---VAVLKARAFNEVDFRHK----TAFGEDAKS 88
Query: 739 VIRGEAHWWNCL--EWEDEATQIAFRSCFQP 767
V+ G N +WE E I FR ++P
Sbjct: 89 VLDGTVAKMNAAKDKWEAEKIHIGFRQAYKP 119
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 31/62 (50%)
Query: 353 ACETEKEKINFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDF 412
+ E I+ ++ + +K ++ N+ L+L NQI +S + P++ LFL+
Sbjct: 38 VTQNELNSIDQIIANNSDIKSVQGIQYLPNLTSLNLSNNQITDISPIQYLPNVTKLFLNG 97
Query: 413 NR 414
N+
Sbjct: 98 NK 99
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 360 KINFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNR--ELM 417
KI L +G LK + G ++++ L L QI ++ + +L L+LD N+ +
Sbjct: 86 KITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS 145
Query: 418 MIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEEL 469
+AG + +L+ L I N ++ L +SKL +L+ D S I L
Sbjct: 146 PLAG-----LTNLQYLSIGNAQVSDLTPL-ANLSKLTTLKADDNKISDISPL 191
>pdb|2PGE|A Chain A, Crystal Structure Of Menc From Desulfotalea Psychrophila
Lsv54
Length = 377
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 387 SLMQNQIKV-LSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLK 445
+ MQ QI+ L+E C L +DF++E ++AG F P +++ G F+
Sbjct: 164 AFMQEQIEAKLAEGYGCLKLKIGAIDFDKECALLAGIRESFSPQQLEIRVDANGAFSPAN 223
Query: 446 LPLGMSKLGSLELLDISH 463
P + +L L I
Sbjct: 224 APQRLKRLSQFHLHSIEQ 241
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
Query: 406 LTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLG---MSKLGSLELLDIS 462
L L ++ +L I+ F PSL L I NV KL LG + KLG+L+ LD+S
Sbjct: 303 LVLSVNHFDQLCQISAANF---PSLTHLYIRG----NVKKLHLGVGCLEKLGNLQTLDLS 355
Query: 463 HSSIE 467
H+ IE
Sbjct: 356 HNDIE 360
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 382 NVRRLSLMQNQIKVLSE-VPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISN--I 438
N+R L L N + L E + + L + L +N ++++ F+ M L+ L +S I
Sbjct: 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148
Query: 439 GYFNVLKLPLGMSKLGSLELLDISHSSIEELP 470
F V + G +KL L LLD+S + +++LP
Sbjct: 149 SRFPVELIKDG-NKLPKLMLLDLSSNKLKKLP 179
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 19/139 (13%)
Query: 112 EKALDIFRSL---REKRIVLLLDDIWERLDLTKVGVPLPGPKNTTSKVVFTTRFFDVCGS 168
E+A D R L + R +L+LDD+W+ L ++ +++ TTR V S
Sbjct: 221 EEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF--------DSQCQILLTTRDKSVTDS 272
Query: 169 MEAHRTFEV--ACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226
+ + + L ++ E+ V + D+ E A ++ K+C G PL + IG
Sbjct: 273 VMGPKYVVPVESSLGKEKGLEILSLFVNMKKA----DLPEQAHSIIKECKGSPLVVSLIG 328
Query: 227 RAMASKKTAEEWRHAIEEL 245
+ + W + +++L
Sbjct: 329 ALL--RDFPNRWEYYLKQL 345
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 404 HLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISH 463
++ ++L +N+ L + + F +PSL+ L + + NV P L +L +LD+S+
Sbjct: 431 NIFEIYLSYNKYLQL-STSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSN 489
Query: 464 SSIEELPEE 472
++I + E+
Sbjct: 490 NNIANINED 498
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 378 KGWENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISN 437
+G N+R L+L +K + + L L L NR L +I G FQ + SL+ L + +
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNR-LDLIRPGSFQGLTSLRKLWLMH 211
Query: 438 IGYFNVLKLPLGMSKLGSLELLDISHSSIEELPEE 472
+ + L SLE L++SH+++ LP +
Sbjct: 212 AQVATIERN--AFDDLKSLEELNLSHNNLMSLPHD 244
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 378 KGWENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISN 437
+G N+R L+L +K + + L L L NR L +I G FQ + SL+ L + +
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNR-LDLIRPGSFQGLTSLRKLWLMH 211
Query: 438 IGYFNVLKLPLGMSKLGSLELLDISHSSIEELPEE 472
+ + L SLE L++SH+++ LP +
Sbjct: 212 AQVATIERN--AFDDLKSLEELNLSHNNLMSLPHD 244
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 19/139 (13%)
Query: 112 EKALDIFRSL---REKRIVLLLDDIWERLDLTKVGVPLPGPKNTTSKVVFTTRFFDVCGS 168
E+A D R L + R +L+LDD+W+ L ++ +++ TTR V S
Sbjct: 227 EEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF--------DSQCQILLTTRDKSVTDS 278
Query: 169 MEAHRTFEV--ACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226
+ + + L ++ E+ V + D+ E A ++ K+C G PL + IG
Sbjct: 279 VMGPKYVVPVESSLGKEKGLEILSLFVNMKKA----DLPEQAHSIIKECKGSPLVVSLIG 334
Query: 227 RAMASKKTAEEWRHAIEEL 245
+ + W + +++L
Sbjct: 335 ALL--RDFPNRWEYYLKQL 351
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,256,565
Number of Sequences: 62578
Number of extensions: 836200
Number of successful extensions: 1838
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1822
Number of HSP's gapped (non-prelim): 30
length of query: 769
length of database: 14,973,337
effective HSP length: 106
effective length of query: 663
effective length of database: 8,340,069
effective search space: 5529465747
effective search space used: 5529465747
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)