Query 039535
Match_columns 769
No_of_seqs 281 out of 3429
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 10:41:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039535.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039535hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.4E-74 5.3E-79 650.6 39.6 722 11-761 147-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.7E-58 1E-62 548.9 45.4 643 19-728 182-911 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.9E-38 4.1E-43 326.6 17.6 281 26-309 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 1.9E-22 4.1E-27 243.1 17.5 338 378-743 137-509 (968)
5 KOG4194 Membrane glycoprotein 99.9 1.9E-23 4.1E-28 212.8 2.2 330 377-741 98-447 (873)
6 PLN00113 leucine-rich repeat r 99.9 8.9E-22 1.9E-26 237.3 14.9 334 378-744 209-582 (968)
7 PLN03210 Resistant to P. syrin 99.9 5.7E-21 1.2E-25 230.0 19.2 322 382-728 590-948 (1153)
8 KOG0444 Cytoskeletal regulator 99.8 8.1E-23 1.7E-27 209.4 -3.7 341 361-741 34-394 (1255)
9 KOG0444 Cytoskeletal regulator 99.8 1.4E-21 2.9E-26 200.5 -1.4 329 378-745 29-374 (1255)
10 KOG4194 Membrane glycoprotein 99.8 6.8E-20 1.5E-24 187.1 7.7 345 357-742 50-425 (873)
11 KOG0472 Leucine-rich repeat pr 99.7 3.6E-20 7.9E-25 180.9 -7.8 326 366-722 121-540 (565)
12 KOG0472 Leucine-rich repeat pr 99.6 1.2E-18 2.5E-23 170.5 -8.7 152 377-551 64-216 (565)
13 KOG0618 Serine/threonine phosp 99.6 3.3E-17 7.1E-22 176.9 -4.4 348 382-744 46-487 (1081)
14 PRK15387 E3 ubiquitin-protein 99.6 3.1E-14 6.6E-19 159.2 16.2 135 360-516 202-336 (788)
15 PRK00411 cdc6 cell division co 99.5 8.8E-12 1.9E-16 134.3 26.4 298 18-334 27-358 (394)
16 PRK04841 transcriptional regul 99.5 2E-12 4.3E-17 155.5 23.3 295 16-353 9-332 (903)
17 PRK15387 E3 ubiquitin-protein 99.5 1.6E-13 3.6E-18 153.5 11.9 255 382-722 202-457 (788)
18 COG2909 MalT ATP-dependent tra 99.4 3.3E-12 7.2E-17 138.4 17.9 298 14-355 12-340 (894)
19 KOG0618 Serine/threonine phosp 99.4 3.9E-15 8.5E-20 161.1 -4.5 278 379-698 197-488 (1081)
20 KOG4658 Apoptotic ATPase [Sign 99.4 7.9E-14 1.7E-18 159.6 5.8 328 362-729 526-866 (889)
21 TIGR02928 orc1/cdc6 family rep 99.4 7.5E-11 1.6E-15 125.8 28.1 299 18-334 12-350 (365)
22 PF01637 Arch_ATPase: Archaeal 99.4 4.5E-13 9.8E-18 133.6 9.3 196 23-224 1-233 (234)
23 KOG0617 Ras suppressor protein 99.4 6.8E-15 1.5E-19 127.5 -4.3 166 370-558 22-190 (264)
24 PRK15370 E3 ubiquitin-protein 99.4 1.4E-12 3.1E-17 147.0 12.9 115 384-515 181-296 (754)
25 PRK15370 E3 ubiquitin-protein 99.4 1.7E-12 3.7E-17 146.4 10.4 241 363-721 182-426 (754)
26 TIGR03015 pepcterm_ATPase puta 99.3 4.1E-10 9E-15 114.5 23.8 209 13-229 12-242 (269)
27 KOG4341 F-box protein containi 99.3 4.4E-14 9.4E-19 140.0 -6.2 308 404-740 139-456 (483)
28 COG2256 MGS1 ATPase related to 99.3 9.1E-11 2E-15 117.0 16.1 255 19-307 28-301 (436)
29 KOG4341 F-box protein containi 99.3 2.9E-13 6.3E-18 134.2 -2.5 288 428-746 138-439 (483)
30 KOG4237 Extracellular matrix p 99.3 3.1E-13 6.7E-18 132.9 -2.6 149 361-514 48-200 (498)
31 TIGR00635 ruvB Holliday juncti 99.2 1.4E-10 3.1E-15 120.1 15.1 190 21-228 4-204 (305)
32 KOG0617 Ras suppressor protein 99.2 3.1E-13 6.8E-18 117.3 -4.4 135 396-552 26-161 (264)
33 PRK00080 ruvB Holliday junctio 99.2 2.4E-10 5.2E-15 119.0 13.8 193 18-228 22-225 (328)
34 cd00116 LRR_RI Leucine-rich re 99.2 1.2E-11 2.7E-16 129.6 2.9 114 400-515 20-150 (319)
35 PF05729 NACHT: NACHT domain 99.1 2.9E-10 6.3E-15 106.5 11.0 144 43-194 1-164 (166)
36 PTZ00112 origin recognition co 99.1 1.5E-09 3.3E-14 119.0 17.5 209 18-229 752-986 (1164)
37 KOG4237 Extracellular matrix p 99.1 2.8E-12 6.1E-17 126.2 -4.0 111 403-518 67-180 (498)
38 COG3899 Predicted ATPase [Gene 99.1 4.2E-10 9E-15 129.9 11.8 310 22-353 1-386 (849)
39 COG1474 CDC6 Cdc6-related prot 99.1 2E-08 4.3E-13 104.3 21.7 203 19-225 15-238 (366)
40 PF14580 LRR_9: Leucine-rich r 99.0 2.7E-10 5.8E-15 104.5 4.8 132 374-511 12-149 (175)
41 PRK13342 recombination factor 99.0 5.9E-09 1.3E-13 112.0 15.8 194 20-244 11-218 (413)
42 PF05496 RuvB_N: Holliday junc 99.0 5.1E-09 1.1E-13 97.8 12.9 176 17-230 20-226 (233)
43 cd00116 LRR_RI Leucine-rich re 99.0 1.4E-10 3E-15 121.7 2.8 35 625-660 276-317 (319)
44 PRK06893 DNA replication initi 99.0 4.3E-09 9.4E-14 103.2 12.8 156 41-229 38-207 (229)
45 TIGR03420 DnaA_homol_Hda DnaA 99.0 7.6E-09 1.7E-13 102.2 13.0 177 20-229 14-205 (226)
46 PF14516 AAA_35: AAA-like doma 98.9 4.1E-07 8.8E-12 94.4 25.7 206 16-232 6-246 (331)
47 PF14580 LRR_9: Leucine-rich r 98.9 7.7E-10 1.7E-14 101.5 4.0 126 360-487 20-150 (175)
48 PRK08727 hypothetical protein; 98.9 1.9E-08 4.1E-13 98.8 13.4 169 21-222 19-201 (233)
49 KOG2028 ATPase related to the 98.9 2.3E-07 4.9E-12 91.1 19.2 175 21-221 138-332 (554)
50 PRK04195 replication factor C 98.8 1.3E-07 2.9E-12 103.6 19.0 244 19-308 12-271 (482)
51 PTZ00202 tuzin; Provisional 98.8 2E-07 4.4E-12 95.2 18.2 167 12-193 253-434 (550)
52 PRK14961 DNA polymerase III su 98.8 1.1E-07 2.4E-12 100.2 17.0 194 20-226 15-221 (363)
53 PRK12402 replication factor C 98.8 6.9E-08 1.5E-12 101.9 15.6 198 20-226 14-227 (337)
54 PRK14949 DNA polymerase III su 98.8 5.7E-08 1.2E-12 108.7 15.3 182 20-226 15-221 (944)
55 PRK07003 DNA polymerase III su 98.8 1.3E-07 2.7E-12 103.9 17.0 180 20-224 15-220 (830)
56 PRK14960 DNA polymerase III su 98.8 8.4E-08 1.8E-12 104.1 15.3 177 20-225 14-219 (702)
57 PRK08084 DNA replication initi 98.8 6.3E-08 1.4E-12 95.3 13.0 175 21-228 22-212 (235)
58 PRK14963 DNA polymerase III su 98.8 1.3E-07 2.8E-12 102.8 16.4 195 21-226 14-218 (504)
59 KOG3207 Beta-tubulin folding c 98.8 1.3E-09 2.8E-14 109.3 0.6 113 400-513 118-233 (505)
60 KOG3207 Beta-tubulin folding c 98.8 1.2E-09 2.5E-14 109.7 -0.3 161 378-556 118-286 (505)
61 PRK09112 DNA polymerase III su 98.8 1.2E-07 2.5E-12 98.3 14.0 198 19-226 21-241 (351)
62 COG2255 RuvB Holliday junction 98.7 7.5E-07 1.6E-11 85.1 17.9 193 20-230 25-228 (332)
63 PRK00440 rfc replication facto 98.7 2.3E-07 5E-12 97.1 16.4 179 21-226 17-204 (319)
64 PRK14956 DNA polymerase III su 98.7 1.2E-07 2.6E-12 100.1 14.0 199 20-226 17-223 (484)
65 PRK14957 DNA polymerase III su 98.7 2.4E-07 5.3E-12 100.7 15.9 182 20-225 15-221 (546)
66 KOG2120 SCF ubiquitin ligase, 98.7 7.2E-10 1.6E-14 105.4 -3.1 185 454-696 185-373 (419)
67 PLN03025 replication factor C 98.7 1.7E-07 3.6E-12 97.3 13.7 181 20-222 12-197 (319)
68 PRK14964 DNA polymerase III su 98.7 2.7E-07 5.9E-12 98.8 15.4 183 20-226 12-218 (491)
69 PRK05896 DNA polymerase III su 98.7 1.7E-07 3.7E-12 101.8 13.9 197 19-227 14-222 (605)
70 PRK05564 DNA polymerase III su 98.7 4E-07 8.6E-12 94.3 16.2 176 21-223 4-188 (313)
71 PRK12323 DNA polymerase III su 98.7 2.1E-07 4.5E-12 100.9 14.3 196 21-226 16-226 (700)
72 KOG1259 Nischarin, modulator o 98.7 7.6E-09 1.6E-13 98.5 2.9 76 610-697 335-410 (490)
73 PRK07471 DNA polymerase III su 98.7 5E-07 1.1E-11 94.2 16.6 197 20-226 18-239 (365)
74 PRK14962 DNA polymerase III su 98.7 4.6E-07 1E-11 97.7 16.4 187 19-228 12-222 (472)
75 PRK08903 DnaA regulatory inact 98.7 1.3E-07 2.9E-12 93.2 11.3 173 20-229 17-203 (227)
76 TIGR02397 dnaX_nterm DNA polym 98.7 6.1E-07 1.3E-11 95.4 17.1 186 19-228 12-221 (355)
77 KOG1259 Nischarin, modulator o 98.7 7.7E-09 1.7E-13 98.5 2.1 130 425-604 281-410 (490)
78 PRK09087 hypothetical protein; 98.7 1.9E-07 4.1E-12 90.9 11.6 166 20-227 20-197 (226)
79 PF00308 Bac_DnaA: Bacterial d 98.7 2E-07 4.3E-12 90.4 11.6 162 43-226 35-209 (219)
80 PRK06645 DNA polymerase III su 98.6 8E-07 1.7E-11 96.1 17.1 196 21-225 21-229 (507)
81 PRK08691 DNA polymerase III su 98.6 2.9E-07 6.3E-12 101.1 13.7 182 20-226 15-221 (709)
82 PRK13341 recombination factor 98.6 9.9E-07 2.1E-11 99.7 18.3 175 20-225 27-217 (725)
83 PRK05642 DNA replication initi 98.6 4E-07 8.6E-12 89.5 13.2 176 21-229 19-212 (234)
84 PRK07940 DNA polymerase III su 98.6 5.3E-07 1.1E-11 94.8 14.9 172 21-225 5-213 (394)
85 PF13401 AAA_22: AAA domain; P 98.6 5.8E-08 1.3E-12 86.6 6.7 117 41-162 3-125 (131)
86 PF13191 AAA_16: AAA ATPase do 98.6 1.1E-07 2.4E-12 90.7 9.0 47 22-68 1-50 (185)
87 KOG2120 SCF ubiquitin ligase, 98.6 2E-09 4.3E-14 102.5 -3.2 186 428-662 185-375 (419)
88 PRK07994 DNA polymerase III su 98.6 4.7E-07 1E-11 100.1 14.6 195 20-226 15-221 (647)
89 PRK14951 DNA polymerase III su 98.6 7.3E-07 1.6E-11 98.3 15.9 196 20-225 15-225 (618)
90 PRK14958 DNA polymerase III su 98.6 5.7E-07 1.2E-11 98.0 14.7 183 20-226 15-221 (509)
91 cd00009 AAA The AAA+ (ATPases 98.6 3.1E-07 6.7E-12 84.0 11.0 124 24-164 1-131 (151)
92 PRK14955 DNA polymerase III su 98.6 4.9E-07 1.1E-11 96.4 13.9 202 20-227 15-230 (397)
93 PRK14970 DNA polymerase III su 98.6 1.1E-06 2.5E-11 93.3 16.5 186 19-227 15-211 (367)
94 PRK14952 DNA polymerase III su 98.6 1E-06 2.2E-11 96.9 15.9 194 20-225 12-219 (584)
95 KOG0532 Leucine-rich repeat (L 98.6 1.6E-09 3.5E-14 112.0 -5.6 153 380-557 74-227 (722)
96 PF13173 AAA_14: AAA domain 98.6 1.1E-07 2.4E-12 84.0 6.8 120 42-185 2-127 (128)
97 PRK07133 DNA polymerase III su 98.6 1E-06 2.2E-11 97.9 15.5 189 20-226 17-220 (725)
98 KOG2227 Pre-initiation complex 98.6 5.3E-06 1.2E-10 84.9 19.0 205 19-230 148-373 (529)
99 KOG0532 Leucine-rich repeat (L 98.6 2.7E-09 5.9E-14 110.4 -4.5 148 386-557 55-205 (722)
100 KOG0989 Replication factor C, 98.6 1.1E-06 2.3E-11 85.0 13.1 181 19-220 34-225 (346)
101 TIGR00678 holB DNA polymerase 98.6 1.6E-06 3.6E-11 82.5 14.6 161 32-220 3-186 (188)
102 PRK14953 DNA polymerase III su 98.5 2E-06 4.2E-11 93.3 16.6 183 20-227 15-222 (486)
103 PRK09111 DNA polymerase III su 98.5 1.6E-06 3.4E-11 96.1 15.7 198 20-226 23-234 (598)
104 PRK14969 DNA polymerase III su 98.5 9.8E-07 2.1E-11 97.0 14.1 179 20-226 15-221 (527)
105 PRK14954 DNA polymerase III su 98.5 2.1E-06 4.5E-11 95.2 15.8 200 19-224 14-227 (620)
106 PRK07764 DNA polymerase III su 98.5 1.9E-06 4E-11 98.8 15.8 176 21-225 15-221 (824)
107 TIGR01242 26Sp45 26S proteasom 98.5 4.1E-06 8.8E-11 88.7 17.5 172 20-219 121-328 (364)
108 PRK14959 DNA polymerase III su 98.5 1.8E-06 3.9E-11 94.6 14.6 182 19-229 14-225 (624)
109 TIGR03345 VI_ClpV1 type VI sec 98.5 1.6E-06 3.6E-11 100.5 15.0 178 21-218 187-389 (852)
110 PRK06305 DNA polymerase III su 98.5 3.8E-06 8.2E-11 90.6 16.3 184 19-226 15-223 (451)
111 PRK08451 DNA polymerase III su 98.5 4.6E-06 1E-10 90.3 16.7 180 20-226 13-219 (535)
112 PRK14950 DNA polymerase III su 98.4 5.5E-06 1.2E-10 92.9 17.3 198 19-228 14-224 (585)
113 PRK14087 dnaA chromosomal repl 98.4 2.1E-06 4.6E-11 92.5 13.1 185 43-245 142-348 (450)
114 TIGR02639 ClpA ATP-dependent C 98.4 2.6E-06 5.5E-11 98.4 14.4 155 21-194 182-359 (731)
115 COG4886 Leucine-rich repeat (L 98.4 1.9E-07 4.2E-12 100.8 4.6 107 399-512 112-219 (394)
116 PRK14971 DNA polymerase III su 98.4 7.1E-06 1.5E-10 91.6 16.4 183 20-226 16-223 (614)
117 PRK14948 DNA polymerase III su 98.4 7.8E-06 1.7E-10 91.3 16.6 196 21-227 16-224 (620)
118 KOG1909 Ran GTPase-activating 98.4 1.5E-07 3.2E-12 92.3 2.6 240 380-662 29-310 (382)
119 PRK06647 DNA polymerase III su 98.4 9E-06 2E-10 89.7 16.4 197 19-227 14-222 (563)
120 PRK03992 proteasome-activating 98.4 1.3E-05 2.8E-10 85.3 17.0 171 21-219 131-337 (389)
121 TIGR02881 spore_V_K stage V sp 98.4 7.5E-06 1.6E-10 82.3 14.5 155 21-197 6-195 (261)
122 PF05621 TniB: Bacterial TniB 98.4 1.3E-05 2.8E-10 79.1 15.5 204 20-226 33-262 (302)
123 PF13855 LRR_8: Leucine rich r 98.4 4.6E-07 1E-11 68.0 4.3 60 403-466 1-61 (61)
124 TIGR00362 DnaA chromosomal rep 98.3 9.3E-06 2E-10 87.5 15.0 181 43-245 137-337 (405)
125 KOG1909 Ran GTPase-activating 98.3 1.9E-07 4.1E-12 91.6 1.7 242 399-696 26-308 (382)
126 PF13855 LRR_8: Leucine rich r 98.3 4.3E-07 9.4E-12 68.2 3.3 58 455-513 2-60 (61)
127 PF05673 DUF815: Protein of un 98.3 3.4E-05 7.5E-10 73.6 16.7 48 19-66 25-76 (249)
128 PRK05563 DNA polymerase III su 98.3 1.7E-05 3.8E-10 87.9 17.2 194 20-226 15-221 (559)
129 KOG0991 Replication factor C, 98.3 5.3E-06 1.1E-10 76.7 10.5 95 21-136 27-125 (333)
130 COG3267 ExeA Type II secretory 98.3 4.2E-05 9E-10 72.6 16.6 197 26-228 36-248 (269)
131 TIGR02903 spore_lon_C ATP-depe 98.3 2.3E-05 4.9E-10 88.1 17.4 202 19-226 152-396 (615)
132 PRK14088 dnaA chromosomal repl 98.3 6.4E-06 1.4E-10 88.8 12.6 201 21-245 105-332 (440)
133 PRK06620 hypothetical protein; 98.3 6.2E-06 1.4E-10 79.5 11.3 134 43-223 45-187 (214)
134 cd01128 rho_factor Transcripti 98.3 2.5E-06 5.3E-11 83.8 8.5 94 40-135 14-114 (249)
135 PHA02544 44 clamp loader, smal 98.3 8.1E-06 1.7E-10 85.1 12.8 144 20-191 20-171 (316)
136 PRK14965 DNA polymerase III su 98.3 1.2E-05 2.6E-10 89.7 14.6 189 20-221 15-216 (576)
137 COG4886 Leucine-rich repeat (L 98.3 6.9E-07 1.5E-11 96.5 4.6 157 375-554 110-268 (394)
138 PRK14086 dnaA chromosomal repl 98.3 2.4E-05 5.1E-10 85.5 16.1 178 43-245 315-515 (617)
139 COG1222 RPT1 ATP-dependent 26S 98.3 2.1E-05 4.7E-10 77.9 14.1 206 14-247 142-394 (406)
140 KOG2543 Origin recognition com 98.3 1.8E-05 3.8E-10 79.1 13.6 165 20-194 5-194 (438)
141 PLN03150 hypothetical protein; 98.2 2.2E-06 4.7E-11 97.1 8.0 106 404-513 419-526 (623)
142 PRK00149 dnaA chromosomal repl 98.2 8.8E-06 1.9E-10 88.7 12.3 181 43-245 149-349 (450)
143 PRK07399 DNA polymerase III su 98.2 3.8E-05 8.2E-10 78.6 16.0 198 21-226 4-222 (314)
144 PRK12422 chromosomal replicati 98.2 6.4E-05 1.4E-09 80.9 18.3 179 43-245 142-343 (445)
145 KOG1514 Origin recognition com 98.2 5.7E-05 1.2E-09 81.4 17.4 204 19-228 394-624 (767)
146 COG3903 Predicted ATPase [Gene 98.2 1E-06 2.2E-11 89.3 4.0 294 41-355 13-316 (414)
147 TIGR02880 cbbX_cfxQ probable R 98.2 3.2E-05 7E-10 78.3 15.0 156 21-196 22-211 (284)
148 CHL00095 clpC Clp protease ATP 98.2 1.2E-05 2.6E-10 94.1 13.4 155 21-193 179-354 (821)
149 CHL00181 cbbX CbbX; Provisiona 98.2 4.5E-05 9.8E-10 77.1 15.6 157 21-197 23-213 (287)
150 TIGR03689 pup_AAA proteasome A 98.2 3.8E-05 8.2E-10 82.9 15.6 159 21-195 182-380 (512)
151 PTZ00361 26 proteosome regulat 98.2 2.1E-05 4.6E-10 83.6 13.5 171 21-219 183-389 (438)
152 PF10443 RNA12: RNA12 protein; 98.2 7.4E-05 1.6E-09 77.2 16.2 198 26-235 1-288 (431)
153 PRK10865 protein disaggregatio 98.1 1.9E-05 4.1E-10 92.2 13.5 155 21-194 178-355 (857)
154 TIGR03346 chaperone_ClpB ATP-d 98.1 3.5E-05 7.6E-10 90.5 15.4 155 21-194 173-350 (852)
155 PRK11034 clpA ATP-dependent Cl 98.1 2.3E-05 5E-10 89.3 12.6 155 21-193 186-362 (758)
156 COG0466 Lon ATP-dependent Lon 98.1 2.3E-05 5E-10 84.7 11.8 157 20-194 322-509 (782)
157 PTZ00454 26S protease regulato 98.1 7.7E-05 1.7E-09 78.9 15.7 171 21-219 145-351 (398)
158 PRK09376 rho transcription ter 98.1 6E-06 1.3E-10 84.4 7.0 101 32-134 158-266 (416)
159 KOG0733 Nuclear AAA ATPase (VC 98.1 4E-05 8.6E-10 81.0 12.4 171 21-219 190-396 (802)
160 PRK05707 DNA polymerase III su 98.0 0.00012 2.5E-09 75.5 15.1 94 124-225 106-203 (328)
161 COG0593 DnaA ATPase involved i 98.0 8.2E-05 1.8E-09 77.3 13.8 186 42-250 113-318 (408)
162 TIGR01241 FtsH_fam ATP-depende 98.0 0.00017 3.6E-09 79.8 17.0 198 21-246 55-296 (495)
163 TIGR00602 rad24 checkpoint pro 98.0 2.5E-05 5.5E-10 86.6 10.3 47 20-66 83-134 (637)
164 TIGR00767 rho transcription te 98.0 3.3E-05 7.2E-10 79.6 10.0 93 40-134 166-265 (415)
165 CHL00176 ftsH cell division pr 98.0 0.00014 3E-09 81.5 15.4 171 20-217 182-386 (638)
166 PRK11331 5-methylcytosine-spec 98.0 3.6E-05 7.7E-10 80.7 9.8 106 20-135 174-283 (459)
167 KOG1859 Leucine-rich repeat pr 97.9 3.5E-07 7.7E-12 97.6 -5.5 125 404-552 165-290 (1096)
168 KOG0531 Protein phosphatase 1, 97.9 1.7E-06 3.8E-11 93.4 -0.5 125 382-515 73-199 (414)
169 PLN03150 hypothetical protein; 97.9 2.5E-05 5.5E-10 88.5 8.7 84 429-515 419-503 (623)
170 PRK08769 DNA polymerase III su 97.9 0.00032 7E-09 71.5 15.4 173 27-226 10-209 (319)
171 PRK06871 DNA polymerase III su 97.9 0.0005 1.1E-08 70.3 16.1 174 29-222 10-200 (325)
172 KOG1644 U2-associated snRNP A' 97.9 1.7E-05 3.7E-10 72.1 4.8 105 382-488 43-151 (233)
173 KOG1947 Leucine rich repeat pr 97.9 3E-06 6.4E-11 94.5 -0.3 136 424-572 184-326 (482)
174 KOG2004 Mitochondrial ATP-depe 97.8 0.0001 2.2E-09 79.5 10.9 158 19-194 409-597 (906)
175 PRK08058 DNA polymerase III su 97.8 0.00023 5E-09 73.9 13.6 146 22-192 6-181 (329)
176 PF12799 LRR_4: Leucine Rich r 97.8 2.4E-05 5.2E-10 53.6 4.2 39 455-494 2-40 (44)
177 KOG2982 Uncharacterized conser 97.8 4.7E-06 1E-10 79.9 0.8 37 624-660 246-289 (418)
178 PRK12608 transcription termina 97.8 0.0002 4.4E-09 73.4 12.3 104 29-134 119-230 (380)
179 PF00004 AAA: ATPase family as 97.8 5.9E-05 1.3E-09 67.2 7.5 22 45-66 1-22 (132)
180 KOG1947 Leucine rich repeat pr 97.8 4.8E-06 1E-10 92.9 0.5 137 400-549 185-329 (482)
181 CHL00195 ycf46 Ycf46; Provisio 97.8 0.00019 4E-09 77.8 12.3 173 21-220 228-430 (489)
182 KOG0730 AAA+-type ATPase [Post 97.8 0.00044 9.5E-09 74.4 13.8 171 22-220 435-638 (693)
183 COG2812 DnaX DNA polymerase II 97.8 0.00021 4.5E-09 76.7 11.6 190 21-227 16-222 (515)
184 PRK08116 hypothetical protein; 97.7 7E-05 1.5E-09 75.0 7.5 102 43-162 115-220 (268)
185 PF12799 LRR_4: Leucine Rich r 97.7 3.1E-05 6.8E-10 53.0 3.4 40 428-470 1-40 (44)
186 COG1223 Predicted ATPase (AAA+ 97.7 0.00086 1.9E-08 63.6 13.9 171 21-219 121-319 (368)
187 KOG2228 Origin recognition com 97.7 0.00018 3.8E-09 70.9 9.6 168 21-193 24-219 (408)
188 PF13177 DNA_pol3_delta2: DNA 97.7 0.00028 6.2E-09 64.9 10.6 42 25-66 1-43 (162)
189 KOG0733 Nuclear AAA ATPase (VC 97.7 0.00039 8.4E-09 73.8 12.5 153 42-220 545-719 (802)
190 PRK08181 transposase; Validate 97.7 7.5E-05 1.6E-09 74.3 7.0 77 35-134 101-177 (269)
191 PRK12377 putative replication 97.7 7.9E-05 1.7E-09 73.1 6.7 74 41-134 100-173 (248)
192 TIGR00763 lon ATP-dependent pr 97.7 0.00041 8.9E-09 80.8 13.4 158 21-193 320-505 (775)
193 TIGR02640 gas_vesic_GvpN gas v 97.7 0.0013 2.7E-08 66.2 15.1 55 28-90 9-63 (262)
194 PRK07993 DNA polymerase III su 97.7 0.0011 2.3E-08 68.7 14.7 175 29-222 10-201 (334)
195 PF03215 Rad17: Rad17 cell cyc 97.6 0.00038 8.2E-09 75.9 11.8 56 20-80 18-78 (519)
196 TIGR01243 CDC48 AAA family ATP 97.6 0.00042 9.1E-09 80.6 12.9 173 21-221 178-383 (733)
197 KOG0734 AAA+-type ATPase conta 97.6 0.0005 1.1E-08 71.7 11.7 46 21-66 304-361 (752)
198 KOG1859 Leucine-rich repeat pr 97.6 1.4E-06 3.1E-11 93.2 -6.8 130 375-514 158-291 (1096)
199 PF01695 IstB_IS21: IstB-like 97.6 4.6E-05 1E-09 71.1 3.7 74 40-134 45-118 (178)
200 smart00382 AAA ATPases associa 97.6 0.00018 3.9E-09 64.9 7.5 88 42-136 2-90 (148)
201 KOG0531 Protein phosphatase 1, 97.6 7.3E-06 1.6E-10 88.6 -2.3 129 377-515 91-221 (414)
202 COG0542 clpA ATP-binding subun 97.6 0.00021 4.6E-09 79.8 8.9 157 21-194 170-347 (786)
203 KOG2982 Uncharacterized conser 97.6 9.9E-06 2.1E-10 77.8 -1.3 90 425-514 68-158 (418)
204 PRK06835 DNA replication prote 97.6 0.00018 4E-09 73.8 7.7 37 42-81 183-219 (329)
205 PRK10787 DNA-binding ATP-depen 97.6 0.0004 8.7E-09 80.1 11.2 160 20-194 321-507 (784)
206 KOG0735 AAA+-type ATPase [Post 97.5 0.00093 2E-08 72.3 12.6 150 44-221 703-872 (952)
207 TIGR01243 CDC48 AAA family ATP 97.5 0.0019 4.1E-08 75.2 16.2 171 21-219 453-657 (733)
208 COG1373 Predicted ATPase (AAA+ 97.5 0.0016 3.6E-08 69.2 14.4 165 24-224 20-191 (398)
209 PRK06090 DNA polymerase III su 97.5 0.0031 6.7E-08 64.3 15.5 164 28-225 10-201 (319)
210 KOG3665 ZYG-1-like serine/thre 97.5 5.2E-05 1.1E-09 85.7 2.7 131 381-515 122-263 (699)
211 PRK10536 hypothetical protein; 97.5 0.00048 1E-08 66.8 8.7 44 21-66 55-98 (262)
212 TIGR03345 VI_ClpV1 type VI sec 97.5 0.0011 2.4E-08 77.4 13.4 46 21-66 566-620 (852)
213 PRK07952 DNA replication prote 97.4 0.00034 7.4E-09 68.5 7.4 88 29-135 84-173 (244)
214 KOG0741 AAA+-type ATPase [Post 97.4 0.0041 8.9E-08 65.1 15.2 161 41-229 537-716 (744)
215 KOG0728 26S proteasome regulat 97.4 0.003 6.4E-08 59.5 12.7 201 22-246 147-389 (404)
216 PF00448 SRP54: SRP54-type pro 97.4 0.00042 9.1E-09 65.8 7.4 89 42-133 1-92 (196)
217 KOG0652 26S proteasome regulat 97.4 0.005 1.1E-07 58.4 14.1 172 13-208 161-370 (424)
218 PRK04296 thymidine kinase; Pro 97.4 0.00017 3.7E-09 68.5 4.6 114 43-165 3-118 (190)
219 KOG3665 ZYG-1-like serine/thre 97.4 9.1E-05 2E-09 83.7 3.2 141 402-554 121-263 (699)
220 PF10236 DAP3: Mitochondrial r 97.4 0.0044 9.6E-08 63.6 15.1 49 174-222 258-306 (309)
221 KOG4579 Leucine-rich repeat (L 97.4 1.8E-05 3.9E-10 67.1 -1.9 107 384-495 30-140 (177)
222 PLN00020 ribulose bisphosphate 97.4 0.0038 8.3E-08 63.5 14.0 149 41-220 147-333 (413)
223 PF07693 KAP_NTPase: KAP famil 97.4 0.0066 1.4E-07 63.6 16.9 73 26-98 1-80 (325)
224 KOG1644 U2-associated snRNP A' 97.4 0.0002 4.4E-09 65.3 4.5 124 384-513 22-151 (233)
225 PF04665 Pox_A32: Poxvirus A32 97.4 0.00028 6.1E-09 68.1 5.8 36 43-81 14-49 (241)
226 COG1484 DnaC DNA replication p 97.4 0.00098 2.1E-08 66.1 9.7 89 26-134 88-177 (254)
227 KOG0743 AAA+-type ATPase [Post 97.4 0.0065 1.4E-07 63.0 15.5 154 43-233 236-417 (457)
228 PRK06526 transposase; Provisio 97.3 0.00017 3.7E-09 71.4 3.8 26 41-66 97-122 (254)
229 KOG2739 Leucine-rich acidic nu 97.3 0.0001 2.2E-09 70.3 2.1 44 424-467 61-104 (260)
230 PRK06964 DNA polymerase III su 97.3 0.0076 1.7E-07 62.2 15.8 91 123-225 131-225 (342)
231 COG0470 HolB ATPase involved i 97.3 0.0023 5E-08 67.1 12.4 148 22-188 2-176 (325)
232 PRK07261 topology modulation p 97.3 0.00095 2.1E-08 62.1 8.3 23 44-66 2-24 (171)
233 smart00763 AAA_PrkA PrkA AAA d 97.3 0.00046 9.9E-09 70.6 6.4 46 21-66 51-102 (361)
234 PRK09183 transposase/IS protei 97.3 0.00042 9E-09 69.2 5.9 26 41-66 101-126 (259)
235 PRK15386 type III secretion pr 97.3 0.00033 7.1E-09 72.8 5.2 135 565-742 50-186 (426)
236 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0025 5.4E-08 75.1 13.2 60 21-83 565-633 (852)
237 PRK15386 type III secretion pr 97.2 0.0007 1.5E-08 70.4 7.3 72 381-465 52-123 (426)
238 PRK06921 hypothetical protein; 97.2 0.00023 4.9E-09 71.2 3.6 39 41-81 116-154 (266)
239 PF02562 PhoH: PhoH-like prote 97.2 0.00099 2.2E-08 62.9 7.6 128 25-162 4-155 (205)
240 KOG0736 Peroxisome assembly fa 97.2 0.0077 1.7E-07 66.2 14.8 91 21-135 672-775 (953)
241 TIGR02639 ClpA ATP-dependent C 97.2 0.0032 6.9E-08 73.1 13.0 47 20-66 453-508 (731)
242 PRK08939 primosomal protein Dn 97.2 0.0015 3.3E-08 66.7 9.2 89 25-134 135-227 (306)
243 KOG0744 AAA+-type ATPase [Post 97.2 0.0014 2.9E-08 64.4 8.2 80 42-134 177-260 (423)
244 KOG0731 AAA+-type ATPase conta 97.2 0.0046 1E-07 68.9 13.3 175 21-222 311-521 (774)
245 cd00561 CobA_CobO_BtuR ATP:cor 97.2 0.0013 2.9E-08 59.3 7.6 117 43-164 3-139 (159)
246 PRK08118 topology modulation p 97.2 0.00088 1.9E-08 62.0 6.6 35 44-78 3-37 (167)
247 KOG1969 DNA replication checkp 97.2 0.00095 2.1E-08 72.5 7.5 72 41-135 325-398 (877)
248 PRK10865 protein disaggregatio 97.2 0.0032 6.9E-08 73.9 12.6 46 21-66 568-622 (857)
249 PF07728 AAA_5: AAA domain (dy 97.2 0.00027 5.9E-09 63.5 3.0 42 45-92 2-43 (139)
250 KOG4579 Leucine-rich repeat (L 97.2 5.9E-05 1.3E-09 64.1 -1.3 108 404-517 28-138 (177)
251 PRK09361 radB DNA repair and r 97.1 0.0022 4.8E-08 63.0 9.5 45 41-89 22-66 (225)
252 KOG0735 AAA+-type ATPase [Post 97.1 0.0028 6.2E-08 68.7 10.6 160 41-225 430-616 (952)
253 PRK11034 clpA ATP-dependent Cl 97.1 0.0021 4.5E-08 73.6 10.2 46 21-66 458-512 (758)
254 COG5238 RNA1 Ran GTPase-activa 97.1 0.00043 9.4E-09 66.0 3.7 162 381-555 30-228 (388)
255 KOG0739 AAA+-type ATPase [Post 97.1 0.0066 1.4E-07 58.9 11.3 172 21-219 133-335 (439)
256 PRK08699 DNA polymerase III su 97.1 0.0048 1E-07 63.6 11.2 25 42-66 21-45 (325)
257 PRK04132 replication factor C 97.0 0.0095 2.1E-07 68.5 14.2 157 47-226 569-732 (846)
258 TIGR02237 recomb_radB DNA repa 97.0 0.0026 5.6E-08 61.8 8.5 48 41-92 11-58 (209)
259 KOG0727 26S proteasome regulat 97.0 0.0096 2.1E-07 56.2 11.6 143 40-206 187-352 (408)
260 cd00544 CobU Adenosylcobinamid 97.0 0.0011 2.4E-08 61.1 5.5 35 45-85 2-36 (169)
261 PF14532 Sigma54_activ_2: Sigm 97.0 0.00052 1.1E-08 61.4 3.3 43 24-66 1-45 (138)
262 TIGR02012 tigrfam_recA protein 97.0 0.0026 5.7E-08 64.7 8.6 86 41-134 54-143 (321)
263 PRK10733 hflB ATP-dependent me 97.0 0.0059 1.3E-07 69.5 12.4 170 21-217 152-355 (644)
264 COG0464 SpoVK ATPases of the A 97.0 0.0093 2E-07 66.3 13.7 154 21-197 242-427 (494)
265 CHL00095 clpC Clp protease ATP 97.0 0.002 4.4E-08 75.7 8.6 46 21-66 509-563 (821)
266 PF13207 AAA_17: AAA domain; P 97.0 0.00065 1.4E-08 59.3 3.5 23 44-66 1-23 (121)
267 PRK06067 flagellar accessory p 97.0 0.0028 6E-08 62.7 8.4 88 41-134 24-130 (234)
268 PRK07132 DNA polymerase III su 96.9 0.026 5.7E-07 57.2 15.2 161 29-217 4-177 (299)
269 COG2607 Predicted ATPase (AAA+ 96.9 0.0041 9E-08 58.6 8.5 48 19-66 58-109 (287)
270 KOG2123 Uncharacterized conser 96.9 7.2E-05 1.6E-09 71.4 -3.0 101 402-509 18-124 (388)
271 PRK06696 uridine kinase; Valid 96.9 0.0014 3E-08 64.2 5.6 42 25-66 2-46 (223)
272 cd01123 Rad51_DMC1_radA Rad51_ 96.9 0.0064 1.4E-07 60.3 10.5 57 41-98 18-77 (235)
273 cd01394 radB RadB. The archaea 96.9 0.0058 1.3E-07 59.7 9.9 41 41-84 18-58 (218)
274 cd01131 PilT Pilus retraction 96.9 0.001 2.3E-08 63.6 4.5 110 43-165 2-111 (198)
275 PRK09354 recA recombinase A; P 96.9 0.004 8.6E-08 63.9 8.7 96 31-134 46-148 (349)
276 cd00983 recA RecA is a bacter 96.9 0.0036 7.8E-08 63.8 8.3 85 41-133 54-142 (325)
277 cd01120 RecA-like_NTPases RecA 96.8 0.0073 1.6E-07 55.8 9.8 38 44-84 1-38 (165)
278 KOG2035 Replication factor C, 96.8 0.043 9.3E-07 53.1 14.5 223 21-250 13-263 (351)
279 cd01393 recA_like RecA is a b 96.8 0.0086 1.9E-07 58.9 10.7 50 41-90 18-70 (226)
280 PTZ00494 tuzin-like protein; P 96.8 0.079 1.7E-06 55.0 17.2 170 13-193 363-544 (664)
281 KOG1970 Checkpoint RAD17-RFC c 96.8 0.012 2.5E-07 62.4 11.6 53 22-79 83-142 (634)
282 PRK13531 regulatory ATPase Rav 96.8 0.0018 3.9E-08 68.9 5.7 45 20-66 19-63 (498)
283 CHL00206 ycf2 Ycf2; Provisiona 96.8 0.0062 1.3E-07 74.0 10.4 26 41-66 1629-1654(2281)
284 COG2884 FtsE Predicted ATPase 96.8 0.01 2.2E-07 54.0 9.2 27 40-66 26-52 (223)
285 TIGR00708 cobA cob(I)alamin ad 96.8 0.0043 9.4E-08 56.7 7.1 116 42-163 5-140 (173)
286 KOG0729 26S proteasome regulat 96.8 0.0065 1.4E-07 57.8 8.3 90 21-134 177-280 (435)
287 KOG2739 Leucine-rich acidic nu 96.8 0.0007 1.5E-08 64.7 2.0 85 381-467 43-129 (260)
288 PRK00771 signal recognition pa 96.7 0.012 2.6E-07 62.9 11.4 88 42-133 95-184 (437)
289 TIGR02238 recomb_DMC1 meiotic 96.7 0.0093 2E-07 61.1 10.2 59 41-100 95-156 (313)
290 cd03115 SRP The signal recogni 96.7 0.0061 1.3E-07 57.1 8.2 88 44-134 2-92 (173)
291 PF06309 Torsin: Torsin; Inte 96.7 0.0075 1.6E-07 51.5 7.8 49 21-69 25-80 (127)
292 PLN03187 meiotic recombination 96.7 0.011 2.5E-07 60.9 10.6 60 41-101 125-187 (344)
293 PRK15455 PrkA family serine pr 96.7 0.0019 4.2E-08 69.6 5.1 46 21-66 76-127 (644)
294 PRK05986 cob(I)alamin adenolsy 96.7 0.0055 1.2E-07 56.9 7.3 119 41-163 21-158 (191)
295 PF08423 Rad51: Rad51; InterP 96.7 0.0097 2.1E-07 59.3 9.6 57 42-99 38-97 (256)
296 COG0465 HflB ATP-dependent Zn 96.7 0.017 3.6E-07 63.3 11.9 174 20-220 149-356 (596)
297 COG1419 FlhF Flagellar GTP-bin 96.7 0.013 2.8E-07 60.5 10.5 59 42-101 203-262 (407)
298 PRK05800 cobU adenosylcobinami 96.6 0.001 2.2E-08 61.5 2.2 23 44-66 3-25 (170)
299 TIGR00390 hslU ATP-dependent p 96.6 0.0045 9.7E-08 64.5 7.1 47 20-66 11-71 (441)
300 COG0542 clpA ATP-binding subun 96.6 0.0055 1.2E-07 68.9 8.2 104 21-135 491-604 (786)
301 PRK05342 clpX ATP-dependent pr 96.6 0.0053 1.1E-07 65.3 7.8 46 21-66 71-132 (412)
302 PRK14722 flhF flagellar biosyn 96.6 0.0079 1.7E-07 62.6 8.8 89 41-134 136-225 (374)
303 KOG2170 ATPase of the AAA+ sup 96.6 0.0058 1.3E-07 59.6 7.1 101 21-136 82-190 (344)
304 COG1618 Predicted nucleotide k 96.6 0.0029 6.3E-08 55.7 4.3 25 43-67 6-30 (179)
305 PHA00729 NTP-binding motif con 96.6 0.0034 7.4E-08 60.0 5.2 36 31-66 6-41 (226)
306 TIGR03877 thermo_KaiC_1 KaiC d 96.5 0.015 3.2E-07 57.5 9.7 59 32-95 9-69 (237)
307 cd01121 Sms Sms (bacterial rad 96.5 0.011 2.3E-07 62.1 9.1 84 42-134 82-168 (372)
308 KOG0737 AAA+-type ATPase [Post 96.5 0.027 5.9E-07 56.9 11.3 46 21-66 92-151 (386)
309 PRK11889 flhF flagellar biosyn 96.5 0.016 3.5E-07 60.0 10.0 87 41-133 240-329 (436)
310 PF03308 ArgK: ArgK protein; 96.5 0.0038 8.3E-08 60.2 5.2 58 29-87 14-73 (266)
311 TIGR03499 FlhF flagellar biosy 96.5 0.014 2.9E-07 59.3 9.6 87 41-132 193-280 (282)
312 KOG2123 Uncharacterized conser 96.5 0.00013 2.8E-09 69.7 -4.7 74 364-438 24-98 (388)
313 PRK14974 cell division protein 96.5 0.024 5.3E-07 58.4 11.2 89 42-134 140-232 (336)
314 PRK10867 signal recognition pa 96.4 0.012 2.6E-07 62.8 9.0 25 42-66 100-124 (433)
315 PRK05541 adenylylsulfate kinas 96.4 0.0077 1.7E-07 56.6 6.8 36 41-79 6-41 (176)
316 cd01133 F1-ATPase_beta F1 ATP 96.4 0.0073 1.6E-07 59.7 6.7 93 40-134 67-173 (274)
317 cd03238 ABC_UvrA The excision 96.4 0.011 2.4E-07 55.0 7.6 125 41-177 20-161 (176)
318 PTZ00035 Rad51 protein; Provis 96.4 0.028 6.1E-07 58.3 11.3 59 41-100 117-178 (337)
319 PF12775 AAA_7: P-loop contain 96.4 0.0044 9.6E-08 62.2 5.2 52 32-87 24-75 (272)
320 COG0563 Adk Adenylate kinase a 96.4 0.0061 1.3E-07 56.7 5.7 23 44-66 2-24 (178)
321 COG1102 Cmk Cytidylate kinase 96.4 0.006 1.3E-07 53.9 5.1 44 44-101 2-45 (179)
322 PRK08233 hypothetical protein; 96.4 0.013 2.9E-07 55.3 8.2 25 42-66 3-27 (182)
323 TIGR00064 ftsY signal recognit 96.4 0.021 4.6E-07 57.4 9.8 90 41-133 71-163 (272)
324 COG1066 Sms Predicted ATP-depe 96.4 0.02 4.4E-07 58.7 9.5 97 30-134 79-178 (456)
325 TIGR02239 recomb_RAD51 DNA rep 96.4 0.024 5.1E-07 58.4 10.3 59 41-100 95-156 (316)
326 PRK04301 radA DNA repair and r 96.3 0.03 6.5E-07 58.1 11.1 58 41-99 101-161 (317)
327 PF13245 AAA_19: Part of AAA d 96.3 0.0072 1.6E-07 47.2 5.0 39 41-79 9-48 (76)
328 PF01583 APS_kinase: Adenylyls 96.3 0.0052 1.1E-07 55.2 4.7 36 42-80 2-37 (156)
329 TIGR03878 thermo_KaiC_2 KaiC d 96.3 0.0086 1.9E-07 59.9 6.9 40 41-83 35-74 (259)
330 PRK05201 hslU ATP-dependent pr 96.3 0.012 2.6E-07 61.5 7.8 79 20-98 14-107 (443)
331 KOG3928 Mitochondrial ribosome 96.3 0.087 1.9E-06 54.0 13.5 59 171-229 402-460 (461)
332 TIGR02858 spore_III_AA stage I 96.3 0.024 5.2E-07 56.6 9.7 124 30-165 98-231 (270)
333 PRK06547 hypothetical protein; 96.3 0.0064 1.4E-07 56.4 5.2 31 36-66 9-39 (172)
334 PF07724 AAA_2: AAA domain (Cd 96.3 0.0059 1.3E-07 56.6 5.0 42 42-86 3-45 (171)
335 TIGR00959 ffh signal recogniti 96.3 0.021 4.5E-07 61.0 9.7 25 42-66 99-123 (428)
336 PF13481 AAA_25: AAA domain; P 96.3 0.014 3.1E-07 55.7 7.9 43 42-84 32-81 (193)
337 KOG0726 26S proteasome regulat 96.3 0.023 5E-07 55.0 8.9 46 21-66 185-243 (440)
338 COG5238 RNA1 Ran GTPase-activa 96.3 0.01 2.3E-07 56.9 6.6 192 399-603 26-252 (388)
339 PRK07667 uridine kinase; Provi 96.3 0.01 2.2E-07 56.6 6.6 37 30-66 3-41 (193)
340 PRK13765 ATP-dependent proteas 96.2 0.0075 1.6E-07 67.6 6.4 76 20-100 30-105 (637)
341 cd03246 ABCC_Protease_Secretio 96.2 0.014 3E-07 54.6 7.4 26 41-66 27-52 (173)
342 cd03214 ABC_Iron-Siderophores_ 96.2 0.011 2.3E-07 55.7 6.7 122 41-166 24-161 (180)
343 KOG0738 AAA+-type ATPase [Post 96.2 0.021 4.5E-07 57.8 8.7 46 21-66 212-269 (491)
344 TIGR00150 HI0065_YjeE ATPase, 96.2 0.0087 1.9E-07 52.3 5.4 39 28-66 6-46 (133)
345 PRK12727 flagellar biosynthesi 96.2 0.029 6.4E-07 60.5 10.4 89 41-134 349-438 (559)
346 PRK12678 transcription termina 96.2 0.0061 1.3E-07 65.5 5.2 101 32-134 405-513 (672)
347 COG1136 SalX ABC-type antimicr 96.2 0.025 5.4E-07 54.1 8.8 26 41-66 30-55 (226)
348 PRK12723 flagellar biosynthesi 96.2 0.038 8.3E-07 58.1 11.0 90 41-134 173-264 (388)
349 cd02019 NK Nucleoside/nucleoti 96.2 0.0043 9.2E-08 47.6 3.0 23 44-66 1-23 (69)
350 TIGR00382 clpX endopeptidase C 96.2 0.019 4.1E-07 60.8 8.7 47 20-66 76-140 (413)
351 TIGR03881 KaiC_arch_4 KaiC dom 96.2 0.036 7.9E-07 54.6 10.4 40 41-83 19-58 (229)
352 COG0714 MoxR-like ATPases [Gen 96.2 0.012 2.6E-07 61.5 7.2 62 21-90 24-85 (329)
353 PRK05703 flhF flagellar biosyn 96.2 0.035 7.5E-07 59.6 10.8 87 42-133 221-308 (424)
354 COG4133 CcmA ABC-type transpor 96.2 0.02 4.2E-07 52.2 7.4 36 41-79 27-62 (209)
355 PF00910 RNA_helicase: RNA hel 96.2 0.0036 7.8E-08 53.1 2.7 23 45-67 1-23 (107)
356 TIGR01425 SRP54_euk signal rec 96.2 0.019 4.1E-07 60.8 8.6 25 42-66 100-124 (429)
357 PRK09099 type III secretion sy 96.2 0.014 3.1E-07 62.1 7.7 91 40-134 161-263 (441)
358 PRK12726 flagellar biosynthesi 96.2 0.022 4.8E-07 58.7 8.7 88 41-134 205-295 (407)
359 PRK05973 replicative DNA helic 96.2 0.032 7E-07 54.3 9.5 49 41-94 63-111 (237)
360 COG1703 ArgK Putative periplas 96.2 0.0095 2E-07 58.4 5.7 59 31-90 38-98 (323)
361 COG4608 AppF ABC-type oligopep 96.2 0.026 5.7E-07 55.0 8.7 125 40-170 37-177 (268)
362 TIGR01650 PD_CobS cobaltochela 96.2 0.012 2.6E-07 59.7 6.7 48 17-66 41-88 (327)
363 PF13238 AAA_18: AAA domain; P 96.1 0.0043 9.4E-08 54.7 3.3 22 45-66 1-22 (129)
364 PRK04328 hypothetical protein; 96.1 0.021 4.6E-07 56.8 8.4 40 41-83 22-61 (249)
365 KOG1051 Chaperone HSP104 and r 96.1 0.034 7.3E-07 63.7 10.9 102 21-136 562-672 (898)
366 COG4618 ArpD ABC-type protease 96.1 0.022 4.7E-07 59.9 8.5 26 41-66 361-386 (580)
367 cd03230 ABC_DR_subfamily_A Thi 96.1 0.0079 1.7E-07 56.3 5.0 26 41-66 25-50 (173)
368 PRK08149 ATP synthase SpaL; Va 96.1 0.01 2.2E-07 62.9 6.2 89 40-133 149-250 (428)
369 PRK06002 fliI flagellum-specif 96.1 0.0089 1.9E-07 63.4 5.8 90 40-134 163-264 (450)
370 COG0468 RecA RecA/RadA recombi 96.1 0.039 8.4E-07 55.0 9.9 89 41-133 59-150 (279)
371 TIGR00764 lon_rel lon-related 96.1 0.019 4E-07 64.7 8.6 75 21-100 18-92 (608)
372 TIGR03498 FliI_clade3 flagella 96.1 0.0088 1.9E-07 63.4 5.6 91 40-134 138-240 (418)
373 TIGR02236 recomb_radA DNA repa 96.1 0.036 7.8E-07 57.4 10.1 58 41-99 94-154 (310)
374 PTZ00088 adenylate kinase 1; P 96.1 0.0058 1.2E-07 59.5 3.9 23 44-66 8-30 (229)
375 COG3910 Predicted ATPase [Gene 96.1 0.045 9.8E-07 49.7 9.1 26 41-66 36-61 (233)
376 cd01129 PulE-GspE PulE/GspE Th 96.0 0.011 2.3E-07 59.3 5.8 100 29-142 68-167 (264)
377 PRK08533 flagellar accessory p 96.0 0.035 7.5E-07 54.4 9.3 49 41-94 23-71 (230)
378 PF13671 AAA_33: AAA domain; P 96.0 0.0056 1.2E-07 55.2 3.4 23 44-66 1-23 (143)
379 COG2805 PilT Tfp pilus assembl 96.0 0.02 4.4E-07 56.0 7.2 120 25-162 112-232 (353)
380 PRK11823 DNA repair protein Ra 96.0 0.025 5.3E-07 61.3 8.8 51 30-83 66-118 (446)
381 PRK14527 adenylate kinase; Pro 96.0 0.0087 1.9E-07 57.0 4.8 26 41-66 5-30 (191)
382 PRK13407 bchI magnesium chelat 96.0 0.0091 2E-07 61.5 5.1 47 20-66 7-53 (334)
383 PLN03186 DNA repair protein RA 96.0 0.053 1.2E-06 56.1 10.6 59 41-100 122-183 (342)
384 COG0572 Udk Uridine kinase [Nu 96.0 0.022 4.8E-07 53.9 7.1 78 41-126 7-86 (218)
385 KOG3347 Predicted nucleotide k 96.0 0.0094 2E-07 51.7 4.2 25 42-66 7-31 (176)
386 PF13306 LRR_5: Leucine rich r 96.0 0.024 5.1E-07 50.0 7.1 102 399-510 8-111 (129)
387 PF00006 ATP-synt_ab: ATP synt 96.0 0.025 5.5E-07 54.3 7.6 96 33-133 5-114 (215)
388 PF00485 PRK: Phosphoribulokin 95.9 0.0062 1.3E-07 58.2 3.5 23 44-66 1-23 (194)
389 PTZ00301 uridine kinase; Provi 95.9 0.007 1.5E-07 58.1 3.8 25 42-66 3-27 (210)
390 COG3598 RepA RecA-family ATPas 95.9 0.03 6.5E-07 55.3 8.0 90 44-133 91-203 (402)
391 cd03228 ABCC_MRP_Like The MRP 95.9 0.024 5.2E-07 52.9 7.4 27 40-66 26-52 (171)
392 PF00158 Sigma54_activat: Sigm 95.9 0.011 2.4E-07 54.6 4.9 44 23-66 1-46 (168)
393 PF13306 LRR_5: Leucine rich r 95.9 0.026 5.6E-07 49.7 7.2 117 378-505 9-129 (129)
394 cd03247 ABCC_cytochrome_bd The 95.9 0.034 7.3E-07 52.3 8.4 26 41-66 27-52 (178)
395 cd03216 ABC_Carb_Monos_I This 95.9 0.0094 2E-07 55.1 4.5 115 41-166 25-145 (163)
396 TIGR01420 pilT_fam pilus retra 95.9 0.0097 2.1E-07 62.3 5.1 109 41-163 121-230 (343)
397 PRK10463 hydrogenase nickel in 95.9 0.035 7.6E-07 55.5 8.7 27 40-66 102-128 (290)
398 PRK05922 type III secretion sy 95.9 0.018 3.9E-07 61.0 7.0 91 40-134 155-257 (434)
399 cd01135 V_A-ATPase_B V/A-type 95.9 0.024 5.2E-07 56.0 7.4 95 40-134 67-176 (276)
400 TIGR02546 III_secr_ATP type II 95.9 0.031 6.7E-07 59.7 8.7 91 40-134 143-245 (422)
401 PRK10416 signal recognition pa 95.9 0.091 2E-06 54.0 11.8 39 41-82 113-151 (318)
402 PRK07721 fliI flagellum-specif 95.9 0.037 8E-07 59.3 9.2 90 40-133 156-257 (438)
403 PRK12597 F0F1 ATP synthase sub 95.9 0.016 3.4E-07 62.1 6.4 92 40-133 141-246 (461)
404 cd03222 ABC_RNaseL_inhibitor T 95.9 0.012 2.7E-07 54.7 4.9 27 40-66 23-49 (177)
405 PRK13539 cytochrome c biogenes 95.8 0.023 4.9E-07 55.0 7.0 26 41-66 27-52 (207)
406 PF01078 Mg_chelatase: Magnesi 95.8 0.012 2.6E-07 55.3 4.8 44 21-66 3-46 (206)
407 COG0194 Gmk Guanylate kinase [ 95.8 0.033 7.2E-07 50.9 7.4 25 42-66 4-28 (191)
408 PRK08972 fliI flagellum-specif 95.8 0.01 2.3E-07 62.6 4.8 90 40-134 160-262 (444)
409 COG1224 TIP49 DNA helicase TIP 95.8 0.035 7.6E-07 55.6 8.1 48 19-66 37-89 (450)
410 PF02456 Adeno_IVa2: Adenoviru 95.8 0.067 1.4E-06 52.6 9.8 91 44-135 89-207 (369)
411 PF10923 DUF2791: P-loop Domai 95.8 0.067 1.4E-06 56.4 10.7 95 23-121 27-131 (416)
412 TIGR00554 panK_bact pantothena 95.8 0.071 1.5E-06 53.8 10.4 27 40-66 60-86 (290)
413 cd01122 GP4d_helicase GP4d_hel 95.8 0.063 1.4E-06 54.5 10.3 53 41-97 29-81 (271)
414 PRK06762 hypothetical protein; 95.8 0.0086 1.9E-07 55.6 3.7 24 43-66 3-26 (166)
415 PRK09270 nucleoside triphospha 95.8 0.015 3.2E-07 57.2 5.5 27 40-66 31-57 (229)
416 PRK08927 fliI flagellum-specif 95.8 0.013 2.8E-07 62.1 5.3 89 40-133 156-257 (442)
417 PF00154 RecA: recA bacterial 95.8 0.029 6.3E-07 57.0 7.5 96 31-134 39-141 (322)
418 PF07726 AAA_3: ATPase family 95.8 0.0059 1.3E-07 52.3 2.2 29 44-75 1-29 (131)
419 PF06068 TIP49: TIP49 C-termin 95.8 0.022 4.7E-07 58.0 6.5 47 20-66 23-74 (398)
420 KOG0730 AAA+-type ATPase [Post 95.8 0.059 1.3E-06 58.6 10.1 171 22-219 185-386 (693)
421 TIGR03575 selen_PSTK_euk L-ser 95.8 0.033 7.3E-07 57.3 8.0 22 45-66 2-23 (340)
422 TIGR02902 spore_lonB ATP-depen 95.7 0.012 2.6E-07 65.4 5.1 46 21-66 65-110 (531)
423 cd02027 APSK Adenosine 5'-phos 95.7 0.031 6.8E-07 50.6 7.0 23 44-66 1-23 (149)
424 TIGR00416 sms DNA repair prote 95.7 0.035 7.6E-07 60.2 8.5 51 30-83 80-132 (454)
425 PRK05480 uridine/cytidine kina 95.7 0.01 2.2E-07 57.5 4.0 27 40-66 4-30 (209)
426 PRK12724 flagellar biosynthesi 95.7 0.048 1E-06 57.3 9.0 57 42-100 223-280 (432)
427 PRK09519 recA DNA recombinatio 95.7 0.05 1.1E-06 62.0 9.7 96 31-134 46-148 (790)
428 PRK07594 type III secretion sy 95.7 0.018 3.9E-07 61.1 5.9 90 40-134 153-255 (433)
429 PF08298 AAA_PrkA: PrkA AAA do 95.7 0.018 4E-07 58.5 5.6 46 21-66 61-112 (358)
430 PRK03839 putative kinase; Prov 95.7 0.0093 2E-07 56.2 3.4 23 44-66 2-24 (180)
431 cd03229 ABC_Class3 This class 95.7 0.014 2.9E-07 55.0 4.5 26 41-66 25-50 (178)
432 PRK06995 flhF flagellar biosyn 95.7 0.076 1.7E-06 57.3 10.6 88 42-134 256-344 (484)
433 PRK06217 hypothetical protein; 95.6 0.018 3.9E-07 54.4 5.3 23 44-66 3-25 (183)
434 PRK14721 flhF flagellar biosyn 95.6 0.068 1.5E-06 56.7 10.0 88 41-133 190-278 (420)
435 TIGR02655 circ_KaiC circadian 95.6 0.036 7.8E-07 61.0 8.3 65 29-99 248-314 (484)
436 COG3854 SpoIIIAA ncharacterize 95.6 0.031 6.6E-07 52.5 6.4 117 33-162 128-252 (308)
437 PRK05439 pantothenate kinase; 95.6 0.13 2.8E-06 52.3 11.5 27 40-66 84-110 (311)
438 cd03215 ABC_Carb_Monos_II This 95.6 0.018 3.9E-07 54.4 5.1 26 41-66 25-50 (182)
439 PRK07276 DNA polymerase III su 95.6 0.32 7E-06 49.0 14.2 139 26-191 7-173 (290)
440 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.6 0.021 4.5E-07 51.4 5.3 26 41-66 25-50 (144)
441 TIGR01360 aden_kin_iso1 adenyl 95.6 0.011 2.3E-07 56.3 3.6 26 41-66 2-27 (188)
442 PRK05917 DNA polymerase III su 95.6 0.22 4.8E-06 50.0 12.9 38 29-66 5-43 (290)
443 COG0529 CysC Adenylylsulfate k 95.6 0.018 4E-07 51.7 4.6 27 40-66 21-47 (197)
444 TIGR01026 fliI_yscN ATPase Fli 95.5 0.025 5.4E-07 60.6 6.4 90 40-133 161-262 (440)
445 TIGR00235 udk uridine kinase. 95.5 0.012 2.7E-07 56.8 3.8 26 41-66 5-30 (207)
446 PRK08472 fliI flagellum-specif 95.5 0.032 7E-07 59.2 7.2 27 40-66 155-181 (434)
447 KOG0742 AAA+-type ATPase [Post 95.5 0.047 1E-06 55.6 7.8 127 42-194 384-529 (630)
448 TIGR01359 UMP_CMP_kin_fam UMP- 95.5 0.0093 2E-07 56.4 2.9 23 44-66 1-23 (183)
449 PF03266 NTPase_1: NTPase; In 95.5 0.012 2.6E-07 54.3 3.5 23 45-67 2-24 (168)
450 PF00625 Guanylate_kin: Guanyl 95.5 0.018 3.9E-07 54.4 4.8 37 42-81 2-38 (183)
451 PHA02244 ATPase-like protein 95.5 0.017 3.6E-07 59.4 4.8 47 20-66 95-143 (383)
452 cd01124 KaiC KaiC is a circadi 95.5 0.015 3.3E-07 55.2 4.3 44 45-93 2-45 (187)
453 PRK14723 flhF flagellar biosyn 95.5 0.1 2.2E-06 59.3 11.2 88 42-134 185-273 (767)
454 PRK14529 adenylate kinase; Pro 95.5 0.031 6.8E-07 53.9 6.3 22 45-66 3-24 (223)
455 PRK04040 adenylate kinase; Pro 95.5 0.013 2.8E-07 55.3 3.6 24 43-66 3-26 (188)
456 COG5635 Predicted NTPase (NACH 95.5 0.014 3.1E-07 68.7 4.7 193 43-246 223-448 (824)
457 cd03281 ABC_MSH5_euk MutS5 hom 95.5 0.01 2.2E-07 57.4 2.9 24 42-65 29-52 (213)
458 PF08433 KTI12: Chromatin asso 95.4 0.022 4.8E-07 56.9 5.3 25 43-67 2-26 (270)
459 cd00267 ABC_ATPase ABC (ATP-bi 95.4 0.018 3.9E-07 52.8 4.4 119 41-168 24-145 (157)
460 PHA02774 E1; Provisional 95.4 0.03 6.4E-07 60.8 6.5 49 28-81 419-468 (613)
461 cd01132 F1_ATPase_alpha F1 ATP 95.4 0.034 7.3E-07 55.0 6.4 90 40-134 67-171 (274)
462 TIGR01039 atpD ATP synthase, F 95.4 0.037 8.1E-07 58.8 7.1 93 40-134 141-247 (461)
463 PF13086 AAA_11: AAA domain; P 95.4 0.024 5.1E-07 56.1 5.5 36 29-66 6-41 (236)
464 cd01136 ATPase_flagellum-secre 95.4 0.064 1.4E-06 54.9 8.5 89 40-133 67-168 (326)
465 PRK06793 fliI flagellum-specif 95.4 0.026 5.7E-07 59.9 5.9 91 40-134 154-256 (432)
466 TIGR02030 BchI-ChlI magnesium 95.4 0.023 5.1E-07 58.7 5.4 46 21-66 4-49 (337)
467 TIGR03497 FliI_clade2 flagella 95.4 0.026 5.7E-07 59.9 5.9 91 40-134 135-237 (413)
468 cd03223 ABCD_peroxisomal_ALDP 95.4 0.089 1.9E-06 48.7 8.8 26 41-66 26-51 (166)
469 cd01134 V_A-ATPase_A V/A-type 95.4 0.066 1.4E-06 54.6 8.3 52 40-96 155-207 (369)
470 COG1121 ZnuC ABC-type Mn/Zn tr 95.4 0.038 8.3E-07 53.8 6.4 124 41-167 29-203 (254)
471 PRK00279 adk adenylate kinase; 95.4 0.021 4.6E-07 55.5 4.8 23 44-66 2-24 (215)
472 TIGR01351 adk adenylate kinase 95.4 0.018 3.9E-07 55.8 4.3 22 45-66 2-23 (210)
473 PRK00889 adenylylsulfate kinas 95.3 0.024 5.2E-07 53.1 5.0 26 41-66 3-28 (175)
474 CHL00081 chlI Mg-protoporyphyr 95.3 0.02 4.4E-07 59.1 4.8 47 21-67 17-63 (350)
475 PRK09280 F0F1 ATP synthase sub 95.3 0.034 7.4E-07 59.4 6.5 93 40-134 142-248 (463)
476 cd01125 repA Hexameric Replica 95.3 0.083 1.8E-06 52.4 9.0 55 44-98 3-67 (239)
477 COG0467 RAD55 RecA-superfamily 95.3 0.025 5.4E-07 56.9 5.3 52 40-96 21-72 (260)
478 TIGR02524 dot_icm_DotB Dot/Icm 95.3 0.019 4.2E-07 60.0 4.6 96 41-140 133-228 (358)
479 PRK00131 aroK shikimate kinase 95.3 0.016 3.5E-07 54.3 3.7 25 42-66 4-28 (175)
480 PRK07196 fliI flagellum-specif 95.3 0.05 1.1E-06 57.8 7.6 90 40-134 153-255 (434)
481 COG1126 GlnQ ABC-type polar am 95.3 0.037 7.9E-07 51.7 5.7 37 41-81 27-63 (240)
482 PRK05688 fliI flagellum-specif 95.3 0.031 6.8E-07 59.5 6.0 90 40-134 166-268 (451)
483 cd00227 CPT Chloramphenicol (C 95.3 0.017 3.6E-07 54.2 3.6 24 43-66 3-26 (175)
484 PF13604 AAA_30: AAA domain; P 95.3 0.035 7.5E-07 53.0 5.8 35 32-66 8-42 (196)
485 TIGR02322 phosphon_PhnN phosph 95.3 0.016 3.4E-07 54.7 3.4 24 43-66 2-25 (179)
486 PRK00625 shikimate kinase; Pro 95.2 0.017 3.6E-07 53.7 3.4 23 44-66 2-24 (173)
487 PRK06936 type III secretion sy 95.2 0.038 8.3E-07 58.6 6.5 90 40-134 160-262 (439)
488 COG1157 FliI Flagellar biosynt 95.2 0.064 1.4E-06 55.3 7.7 89 40-133 161-262 (441)
489 TIGR01042 V-ATPase_V1_A V-type 95.2 0.077 1.7E-06 57.7 8.7 80 10-97 197-277 (591)
490 COG4088 Predicted nucleotide k 95.2 0.013 2.8E-07 53.9 2.5 25 43-67 2-26 (261)
491 COG0541 Ffh Signal recognition 95.2 0.96 2.1E-05 47.3 16.1 58 42-101 100-157 (451)
492 TIGR03305 alt_F1F0_F1_bet alte 95.2 0.039 8.5E-07 58.7 6.5 93 40-134 136-242 (449)
493 PF05970 PIF1: PIF1-like helic 95.2 0.046 1E-06 57.8 7.1 40 27-66 7-46 (364)
494 PTZ00185 ATPase alpha subunit; 95.1 0.096 2.1E-06 56.1 8.9 93 40-134 187-299 (574)
495 PF02367 UPF0079: Uncharacteri 95.1 0.05 1.1E-06 46.8 5.7 27 40-66 13-39 (123)
496 smart00072 GuKc Guanylate kina 95.1 0.052 1.1E-06 51.3 6.5 25 42-66 2-26 (184)
497 cd02021 GntK Gluconate kinase 95.1 0.016 3.4E-07 52.8 2.8 23 44-66 1-23 (150)
498 PRK09435 membrane ATPase/prote 95.1 0.061 1.3E-06 55.3 7.3 36 31-66 43-80 (332)
499 PRK15453 phosphoribulokinase; 95.1 0.17 3.7E-06 50.2 10.0 26 41-66 4-29 (290)
500 PF03193 DUF258: Protein of un 95.1 0.034 7.4E-07 50.3 4.8 37 27-66 23-59 (161)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-74 Score=650.62 Aligned_cols=722 Identities=43% Similarity=0.738 Sum_probs=603.9
Q ss_pred ccccccCCCCccc-cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHH
Q 039535 11 ESVADERPTERTL-VGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEK 89 (769)
Q Consensus 11 ~~~~~~~~~~~~~-vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 89 (769)
+...+..|..+.. ||.++.+++++..|.+++.++++|+||||+||||||++++++......+|+.++|+.+++.++...
T Consensus 147 ~~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~ 226 (889)
T KOG4658|consen 147 REKVETRPIQSESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRK 226 (889)
T ss_pred hhhcccCCCCccccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHh
Confidence 3344455544433 999999999999999877799999999999999999999999955899999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhhhcc-
Q 039535 90 IQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERLDLTKVGVPLPGPKNTTSKVVFTTRFFDVCGS- 168 (769)
Q Consensus 90 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~~~~~~~~l~~~~~~~~~iiittr~~~~~~~- 168 (769)
++..++..++.....+.....++....+.+.+.++|+++|+||+|+..+|+.+..++| ...+|++|++|||+..++..
T Consensus 227 iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p-~~~~g~KvvlTTRs~~V~~~~ 305 (889)
T KOG4658|consen 227 IQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFP-SRENGSKVVLTTRSEEVCGRA 305 (889)
T ss_pred HHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCC-CccCCeEEEEEeccHhhhhcc
Confidence 9999999999887777777778899999999999999999999999999999999999 66889999999999999888
Q ss_pred cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHhcCCCCHHHHHHHHHHHhcc
Q 039535 169 MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAMASKKTAEEWRHAIEELGRS 248 (769)
Q Consensus 169 ~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~~~~~l~~l~~~ 248 (769)
++....+++..++.+|||++|.+.++.......+..+++|++++++|+|+|+|+.++|+.++...+..+|.++...+...
T Consensus 306 m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~ 385 (889)
T KOG4658|consen 306 MGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSS 385 (889)
T ss_pred ccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccccc
Confidence 77788999999999999999999999886566666899999999999999999999999999988889999999988887
Q ss_pred -cCCCCCCccchhhHHHhhhcCCCccccchhhceecccCCCccccHHHHHHHHhhcCcccc-CcccccccchhhhHHHHh
Q 039535 249 -ASEFPGLGKEVYPVLKFSYDSLPNETIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEE-SNRFGAENRGYYIVGTLV 326 (769)
Q Consensus 249 -~~~~~~~~~~i~~~l~~~~~~L~~~~~~~~~~~~~~~p~~~~i~~~~l~~~w~~~g~~~~-~~~~~~~~~~~~~l~~L~ 326 (769)
..+.+.+.+.++.++..||+.|++ ++|.||+|||.||+++.|+...++.+|+||||+.+ ......++.+.+++..|+
T Consensus 386 ~~~~~~~~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV 464 (889)
T KOG4658|consen 386 LAADFSGMEESILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELV 464 (889)
T ss_pred ccCCCCchhhhhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHH
Confidence 556566678999999999999995 99999999999999999999999999999999998 557788999999999999
Q ss_pred hhcceeeec----CCeEEEehhHHHHHHHHHhhcccccceEEEEcCCccccCCCCCCCcceeEEEEeeccccccCCCCCC
Q 039535 327 HTCLLEEIE----DDKVKMHDVVRDMALWIACETEKEKINFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLSEVPTC 402 (769)
Q Consensus 327 ~~~ll~~~~----~~~~~~h~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 402 (769)
+++++.... ...+.|||++|++|.+++++.+..++.+++..+.+..+.|....+..+|++++.++.+..+..-..+
T Consensus 465 ~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~ 544 (889)
T KOG4658|consen 465 RASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSEN 544 (889)
T ss_pred HHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCC
Confidence 999998863 3789999999999999999888877888888877888888888999999999999999888877888
Q ss_pred CCceEEEeecccc-hhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCccchhhhcCCCCce
Q 039535 403 PHLLTLFLDFNRE-LMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEELPEELKLLVNLKC 481 (769)
Q Consensus 403 ~~L~~L~l~~~~~-~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~ 481 (769)
++|++|.+..|.. +..++..+|..++.|++||+++|. ....+|..++.+.+||||++++++|+.+|..+.++++|.+
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~--~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS--SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC--ccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence 8999999999974 778888889999999999999986 7789999999999999999999999999999999999999
Q ss_pred eeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCChhhHHHHHh
Q 039535 482 LNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLS 561 (769)
Q Consensus 482 L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~ 561 (769)
|++..+..+..+| .+...|++|++|.+....... +......+..+++|+.+.+.......++.+..
T Consensus 623 Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~~~~-------------~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~ 688 (889)
T KOG4658|consen 623 LNLEVTGRLESIP-GILLELQSLRVLRLPRSALSN-------------DKLLLKELENLEHLENLSITISSVLLLEDLLG 688 (889)
T ss_pred ecccccccccccc-chhhhcccccEEEeecccccc-------------chhhHHhhhcccchhhheeecchhHhHhhhhh
Confidence 9999998776665 446679999999998776221 46677788899999999887666544455544
Q ss_pred cccccccceeEEEeccCCCccccccccccccccccceeeccccCcceEeeeeeccccccCCCc-cccccceEeecCcccc
Q 039535 562 SNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGLEELKIDYTEIAQKRREPF-VFRSLRRVTMVSCHKL 640 (769)
Q Consensus 562 ~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~l~~~~~~~~~~~~~-~~~~L~~L~L~~~~~l 640 (769)
...+......+.+.++...+.. .++..+.+|+.|.+.+|...+..--.... .... .|+++.++...+|...
T Consensus 689 ~~~L~~~~~~l~~~~~~~~~~~---~~~~~l~~L~~L~i~~~~~~e~~~~~~~~-----~~~~~~f~~l~~~~~~~~~~~ 760 (889)
T KOG4658|consen 689 MTRLRSLLQSLSIEGCSKRTLI---SSLGSLGNLEELSILDCGISEIVIEWEES-----LIVLLCFPNLSKVSILNCHML 760 (889)
T ss_pred hHHHHHHhHhhhhcccccceee---cccccccCcceEEEEcCCCchhhcccccc-----cchhhhHHHHHHHHhhccccc
Confidence 4444444555555443333333 48888999999999998765421101000 0001 3779999999999999
Q ss_pred cccccccccCCccEEeecCChhhhhhhccCcc-CCcccccCCCCCCCccccc-ccccccccccccCCCCCCCCcceEeec
Q 039535 641 KDLTFLVFAPNLKSISLGDCDALEEIISVGKF-AEVPEMMGHLSPFENLQNL-DLSYLLALKSIYWKPLPFTYLKEMVVN 718 (769)
Q Consensus 641 ~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~L~~L-~l~~c~~l~~~~~~~~~~~~L~~L~i~ 718 (769)
.++.+....++|+.|.+..|..++++++...- ...... ...|.++..+ .+.+.+.+.++-.....++.|+.+.++
T Consensus 761 r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~---i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve 837 (889)
T KOG4658|consen 761 RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKEL---ILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVE 837 (889)
T ss_pred cccchhhccCcccEEEEecccccccCCCHHHHhhhcccE---EecccccccceeeecCCCCceeEecccCccchhheehh
Confidence 99999889999999999999999988553221 111111 2244556666 466666666666666677889999999
Q ss_pred CCccCCCcCCCCCc--ccc-cceEEeccccccccCccccccccccc
Q 039535 719 GCDQLKKLPLDSSC--AEE-RKFVIRGEAHWWNCLEWEDEATQIAF 761 (769)
Q Consensus 719 ~C~~L~~lp~~~~~--~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~ 761 (769)
.||+++.+|..... ..- +.+....+.+|..-++|++++++..+
T Consensus 838 ~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 838 ECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred cCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhhc
Confidence 99999999988755 332 33444466778999999999998766
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.7e-58 Score=548.94 Aligned_cols=643 Identities=21% Similarity=0.259 Sum_probs=444.3
Q ss_pred CCccccchHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEe---cCCC--------
Q 039535 19 TERTLVGLQSQLEQVWRCLIE--ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVV---SKDP-------- 85 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~---~~~~-------- 85 (769)
..+++|||++.++++.+++.- ++.++|+|+||+|+||||||++++++. ...|++.+|+.. ....
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccc
Confidence 456799999999999998852 567899999999999999999999988 677888777742 1100
Q ss_pred ----CHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccccccccccccCCCCCCCCcEEEEEcC
Q 039535 86 ----RLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERLDLTKVGVPLPGPKNTTSKVVFTTR 161 (769)
Q Consensus 86 ----~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~~~~~~~~l~~~~~~~~~iiittr 161 (769)
....+.+.++..+...... .... ...+.+++.++|+||||||+|+..+++.+..... +.++|++||||||
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~-~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~-~~~~GsrIIiTTr 332 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDI-KIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQ-WFGSGSRIIVITK 332 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCc-ccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCc-cCCCCcEEEEEeC
Confidence 0123344444443221110 1111 2456777899999999999998888888876555 6778999999999
Q ss_pred chhhhcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHhcCCCCHHHHHHH
Q 039535 162 FFDVCGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAMASKKTAEEWRHA 241 (769)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~~~~~ 241 (769)
+..++...+..+.|+++.++.++|+++|.++++... .....+.+++.+|+++|+|+|+|++++|+++++ ++.++|..+
T Consensus 333 d~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~ 410 (1153)
T PLN03210 333 DKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDM 410 (1153)
T ss_pred cHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHH
Confidence 999887766778999999999999999999998765 344567889999999999999999999999987 588999999
Q ss_pred HHHHhcccCCCCCCccchhhHHHhhhcCCCccccchhhceecccCCCccccHHHHHHHHhhcCccccCcccccccchhhh
Q 039535 242 IEELGRSASEFPGLGKEVYPVLKFSYDSLPNETIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEESNRFGAENRGYYI 321 (769)
Q Consensus 242 l~~l~~~~~~~~~~~~~i~~~l~~~~~~L~~~~~~~~~~~~~~~p~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~ 321 (769)
++++.... +.++..++.+||+.|+++..|.||+++|+|+.+..++ .+..|++.+.... ...
T Consensus 411 l~~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~ 471 (1153)
T PLN03210 411 LPRLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------NIG 471 (1153)
T ss_pred HHHHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------hhC
Confidence 99987643 3489999999999998756899999999999886654 3566766654332 223
Q ss_pred HHHHhhhcceeeecCCeEEEehhHHHHHHHHHhhc--ccccceEEEEcCCccccC-------------------------
Q 039535 322 VGTLVHTCLLEEIEDDKVKMHDVVRDMALWIACET--EKEKINFLVCAGAGLKEA------------------------- 374 (769)
Q Consensus 322 l~~L~~~~ll~~~~~~~~~~h~lv~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------------------------- 374 (769)
++.|++++|++.. .+.+.||+++|++++++++++ .+.++.++...++-....
T Consensus 472 l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~ 550 (1153)
T PLN03210 472 LKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIH 550 (1153)
T ss_pred hHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeec
Confidence 8899999999875 568999999999999998765 344556665432111111
Q ss_pred -CCCCCCcceeEEEEeecccc--------ccCCCCCC-CCceEEEeecccchhcccCcccccCCcccEEEeeccCccccc
Q 039535 375 -PDVKGWENVRRLSLMQNQIK--------VLSEVPTC-PHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVL 444 (769)
Q Consensus 375 -~~~~~~~~l~~l~l~~~~~~--------~~~~~~~~-~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~ 444 (769)
..+.++.+++.|.+..+... .+..+..+ .+|+.|.+.++. +..+|.. | .+.+|+.|++.++ .+.
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~-f-~~~~L~~L~L~~s---~l~ 624 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSN-F-RPENLVKLQMQGS---KLE 624 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCc-C-CccCCcEEECcCc---ccc
Confidence 11344555566655443211 11223333 346666666554 5555554 3 3567777777777 566
Q ss_pred cCCccccCCCCCCEEeccCC-CCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCcccccccc
Q 039535 445 KLPLGMSKLGSLELLDISHS-SIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASED 523 (769)
Q Consensus 445 ~l~~~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 523 (769)
.++..+..+++|++|++++| .++.+|. +..+++|+.|++++|..+..+|.. ++++++|+.|++++|....
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~------- 695 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLE------- 695 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcC-------
Confidence 66666667777777777766 3556653 666777777777777777777766 6777777777777765431
Q ss_pred ccccCCccchhhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccccceeecc-
Q 039535 524 SVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHD- 602 (769)
Q Consensus 524 ~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~- 602 (769)
.++..+ ++++|+.|.++++.. ++. ......+|+.|.+.++....... . -.+++|++|.+.+
T Consensus 696 --------~Lp~~i-~l~sL~~L~Lsgc~~--L~~---~p~~~~nL~~L~L~~n~i~~lP~---~-~~l~~L~~L~l~~~ 757 (1153)
T PLN03210 696 --------ILPTGI-NLKSLYRLNLSGCSR--LKS---FPDISTNISWLDLDETAIEEFPS---N-LRLENLDELILCEM 757 (1153)
T ss_pred --------ccCCcC-CCCCCCEEeCCCCCC--ccc---cccccCCcCeeecCCCccccccc---c-cccccccccccccc
Confidence 122222 567777777765532 111 11223567777777665433221 1 2456677776655
Q ss_pred -------------------ccCcceEeeeeeccc-cccCCCccccccceEeecCcccccccccccccCCccEEeecCChh
Q 039535 603 -------------------CRGLEELKIDYTEIA-QKRREPFVFRSLRRVTMVSCHKLKDLTFLVFAPNLKSISLGDCDA 662 (769)
Q Consensus 603 -------------------~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~~~~ 662 (769)
+++|+.|++++|... .++.....+++|+.|++.+|.+++.+|....+++|+.|++++|..
T Consensus 758 ~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~ 837 (1153)
T PLN03210 758 KSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSR 837 (1153)
T ss_pred chhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCc
Confidence 246777777776433 334445678999999999998888888766889999999999987
Q ss_pred hhhhhc-----------cCccCCcccccCCCCCCCcccccccccccccccccCCCCCCCCcceEeecCCccCCCcCC
Q 039535 663 LEEIIS-----------VGKFAEVPEMMGHLSPFENLQNLDLSYLLALKSIYWKPLPFTYLKEMVVNGCDQLKKLPL 728 (769)
Q Consensus 663 l~~~~~-----------~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~C~~L~~lp~ 728 (769)
+..++. .+.+..+|. .+..+++|+.|++++|++++.++.....+++|+.+++.+|++|+.++.
T Consensus 838 L~~~p~~~~nL~~L~Ls~n~i~~iP~---si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 838 LRTFPDISTNISDLNLSRTGIEEVPW---WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred cccccccccccCEeECCCCCCccChH---HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 765421 122233332 234555677777777777777666666666777777777777766554
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.9e-38 Score=326.61 Aligned_cols=281 Identities=38% Similarity=0.695 Sum_probs=228.0
Q ss_pred hHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCC
Q 039535 26 LQSQLEQVWRCLIE--ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDD 103 (769)
Q Consensus 26 R~~~~~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~ 103 (769)
|+.++++|.++|.+ ++.++|+|+|+||+||||||.+++++. ..+.+|+.++|++++...+...+++.++.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 89999999999987 678999999999999999999999996 468899999999999988889999999999988755
Q ss_pred CC-CCccHHHHHHHHHHHhccceEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhhhcccCC-CceEEeecCC
Q 039535 104 SW-KSKSVEEKALDIFRSLREKRIVLLLDDIWERLDLTKVGVPLPGPKNTTSKVVFTTRFFDVCGSMEA-HRTFEVACLS 181 (769)
Q Consensus 104 ~~-~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~~~~~~~~l~~~~~~~~~iiittr~~~~~~~~~~-~~~~~l~~l~ 181 (769)
.. ...+.++....+.+.+.++++|+||||+|+...++.+...++ ....+++||+|||+..+...... ...+++++|+
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~-~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLP-SFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------H-CHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred ccccccccccccccchhhhccccceeeeeeecccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence 43 667888899999999999999999999999888888877777 66678999999999887666543 6789999999
Q ss_pred HHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHhcCCCCHHHHHHHHHHHhcccCCCCCCccchhh
Q 039535 182 EKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAMASKKTAEEWRHAIEELGRSASEFPGLGKEVYP 261 (769)
Q Consensus 182 ~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~ 261 (769)
.+|+.++|.+.++.......+..++.+++|++.|+|+|+|+..+|++++...+..+|...++++.....+......++..
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999876542223334567899999999999999999999965446788999888887776554445678999
Q ss_pred HHHhhhcCCCccccchhhceecccCCCccccHHHHHHHHhhcCccccC
Q 039535 262 VLKFSYDSLPNETIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEES 309 (769)
Q Consensus 262 ~l~~~~~~L~~~~~~~~~~~~~~~p~~~~i~~~~l~~~w~~~g~~~~~ 309 (769)
++..||+.|++ ++|.||+++++||.++.|+.+.++++|+++|++...
T Consensus 239 ~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 239 ALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 99999999999 899999999999999999999999999999998763
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=1.9e-22 Score=243.12 Aligned_cols=338 Identities=18% Similarity=0.196 Sum_probs=165.6
Q ss_pred CCCcceeEEEEeecccc-c-cCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCC
Q 039535 378 KGWENVRRLSLMQNQIK-V-LSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGS 455 (769)
Q Consensus 378 ~~~~~l~~l~l~~~~~~-~-~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~ 455 (769)
..+++|+.|++++|.+. . +..+..+++|++|++++|.....+|. .+.++++|++|++++|.+ ...+|..++.+.+
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l--~~~~p~~l~~l~~ 213 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQL--VGQIPRELGQMKS 213 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh-hhhhCcCCCeeeccCCCC--cCcCChHHcCcCC
Confidence 34556666666666553 2 22355666666666666653334443 356666666666666631 1234556666666
Q ss_pred CCEEeccCCCCC-ccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchh
Q 039535 456 LELLDISHSSIE-ELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLI 534 (769)
Q Consensus 456 L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (769)
|++|++++|.++ .+|..++.+++|++|++++|...+.+|.. ++++++|++|++++|.+. ...+
T Consensus 214 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~---------------~~~p 277 (968)
T PLN00113 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLS---------------GPIP 277 (968)
T ss_pred ccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeee---------------ccCc
Confidence 666666666665 56666666666666666666544455554 666666666666666543 1233
Q ss_pred hhhhcCCCceEEEEEeCChhh-HHHHHhcccccccceeEEEeccCCCccccccccccccccccceeeccc----------
Q 039535 535 QELLGLKYLEVLELTLGSYHA-LQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDC---------- 603 (769)
Q Consensus 535 ~~l~~l~~L~~l~l~~~~~~~-~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~---------- 603 (769)
..+..+++|+.|+++.+.... ++..+. -..+|+.|.+.++......+ ..+..+++|+.|++++|
T Consensus 278 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~---~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~p~~l 352 (968)
T PLN00113 278 PSIFSLQKLISLDLSDNSLSGEIPELVI---QLQNLEILHLFSNNFTGKIP--VALTSLPRLQVLQLWSNKFSGEIPKNL 352 (968)
T ss_pred hhHhhccCcCEEECcCCeeccCCChhHc---CCCCCcEEECCCCccCCcCC--hhHhcCCCCCEEECcCCCCcCcCChHH
Confidence 444555555555555443321 111111 12344555554443322221 23444455555554432
Q ss_pred ---cCcceEeeeeeccccccCC-CccccccceEeecCcccccccc-cccccCCccEEeecCChhhhhhhc----------
Q 039535 604 ---RGLEELKIDYTEIAQKRRE-PFVFRSLRRVTMVSCHKLKDLT-FLVFAPNLKSISLGDCDALEEIIS---------- 668 (769)
Q Consensus 604 ---~~l~~l~l~~~~~~~~~~~-~~~~~~L~~L~L~~~~~l~~l~-~l~~l~~L~~L~l~~~~~l~~~~~---------- 668 (769)
++|+.+++++|.+.+..|. ...+++|+.|++.+|.....++ .+..+++|+.|++++|.....++.
T Consensus 353 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 432 (968)
T PLN00113 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF 432 (968)
T ss_pred hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCE
Confidence 2344455555544433222 1334445555555543222222 244455555555555432111100
Q ss_pred ----cCccCC-cccccCCCCCCCcccccccccccccccccCCCCCCCCcceEeecCCccCCCcCCCCCc-ccccceEEec
Q 039535 669 ----VGKFAE-VPEMMGHLSPFENLQNLDLSYLLALKSIYWKPLPFTYLKEMVVNGCDQLKKLPLDSSC-AEERKFVIRG 742 (769)
Q Consensus 669 ----~~~~~~-~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~-~~l~~~~i~~ 742 (769)
.|.+.+ ++. .+..+++|+.|++++|.....+|... ..++|+.|++++|.-...+|..... ++|+.+.+++
T Consensus 433 L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 508 (968)
T PLN00113 433 LDISNNNLQGRINS---RKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508 (968)
T ss_pred EECcCCcccCccCh---hhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcC
Confidence 001111 111 22345566666666664444444322 3466677777666544455543322 5566666654
Q ss_pred c
Q 039535 743 E 743 (769)
Q Consensus 743 ~ 743 (769)
|
T Consensus 509 N 509 (968)
T PLN00113 509 N 509 (968)
T ss_pred C
Confidence 4
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=1.9e-23 Score=212.78 Aligned_cols=330 Identities=17% Similarity=0.170 Sum_probs=237.4
Q ss_pred CCCCcceeEEEEeeccccccCCCCCC-CCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCC-ccccCCC
Q 039535 377 VKGWENVRRLSLMQNQIKVLSEVPTC-PHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLP-LGMSKLG 454 (769)
Q Consensus 377 ~~~~~~l~~l~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~-~~~~~l~ 454 (769)
+..+++|..+++..|.+..+|.++.. .+|+.|+|.+|. +..+..+.++.++.||.||||.| .+..+| +.+..-.
T Consensus 98 f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~l~alrslDLSrN---~is~i~~~sfp~~~ 173 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSALPALRSLDLSRN---LISEIPKPSFPAKV 173 (873)
T ss_pred HhcCCcceeeeeccchhhhcccccccccceeEEeeeccc-cccccHHHHHhHhhhhhhhhhhc---hhhcccCCCCCCCC
Confidence 35567777888888888777777554 448888888776 77777667888888888888888 666666 3455557
Q ss_pred CCCEEeccCCCCCccch-hhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccch
Q 039535 455 SLELLDISHSSIEELPE-ELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVL 533 (769)
Q Consensus 455 ~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 533 (769)
++++|+|++|.|+.+.. .+.++.+|..|.|++|. ++.+|...|+++++|+.|++..|.+..+ .
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~iriv---------------e 237 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIV---------------E 237 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeee---------------h
Confidence 88889999888886643 47777888888888887 7788887788888999998888887632 2
Q ss_pred hhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccccceeecc-----------
Q 039535 534 IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHD----------- 602 (769)
Q Consensus 534 ~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~----------- 602 (769)
-..++++++|+.|.+..+.+..+.+- ...-+.+++.|.|+......... ..+-+++.|+.|+++.
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG--~Fy~l~kme~l~L~~N~l~~vn~--g~lfgLt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDG--AFYGLEKMEHLNLETNRLQAVNE--GWLFGLTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCc--ceeeecccceeecccchhhhhhc--ccccccchhhhhccchhhhheeecchh
Confidence 34567888888888877776554432 11113467777777665554433 4677788888888875
Q ss_pred --ccCcceEeeeeeccccccCCC-ccccccceEeecCcccccccc--cccccCCccEEeecCChhhhhhhccCccCCccc
Q 039535 603 --CRGLEELKIDYTEIAQKRREP-FVFRSLRRVTMVSCHKLKDLT--FLVFAPNLKSISLGDCDALEEIISVGKFAEVPE 677 (769)
Q Consensus 603 --~~~l~~l~l~~~~~~~~~~~~-~~~~~L~~L~L~~~~~l~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 677 (769)
|+.|++|+++.|.++.+.+.. ..+.+|++|.|+.| .+..+. .+..+++|++|+|+.|..-- .|.+
T Consensus 314 sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~---------~IED 383 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSW---------CIED 383 (873)
T ss_pred hhcccceeEeccccccccCChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEE---------EEec
Confidence 678888888888888777765 45688888888888 466654 35567889999988764311 1222
Q ss_pred ccCCCCCCCcccccccccccccccccCC-CCCCCCcceEeecCCccCCCcCCCCCcccccceEEe
Q 039535 678 MMGHLSPFENLQNLDLSYLLALKSIYWK-PLPFTYLKEMVVNGCDQLKKLPLDSSCAEERKFVIR 741 (769)
Q Consensus 678 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~i~~C~~L~~lp~~~~~~~l~~~~i~ 741 (769)
...-+.++++|+.|++.+ +++++++.. ...+++|++|++.+.+-.+--|.-...-.|+++.++
T Consensus 384 aa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 384 AAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred chhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhc
Confidence 233466789999999999 699999853 446899999999777555444444444567777766
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=8.9e-22 Score=237.33 Aligned_cols=334 Identities=19% Similarity=0.191 Sum_probs=174.8
Q ss_pred CCCcceeEEEEeecccc--ccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCC
Q 039535 378 KGWENVRRLSLMQNQIK--VLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGS 455 (769)
Q Consensus 378 ~~~~~l~~l~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~ 455 (769)
..+++|+.|.+.+|.+. .+..+..+++|++|++++|.....+|. .+.++++|++|++++|.+. ..+|..+..+.+
T Consensus 209 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~ 285 (968)
T PLN00113 209 GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLS--GPIPPSIFSLQK 285 (968)
T ss_pred cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh-hHhCCCCCCEEECcCCeee--ccCchhHhhccC
Confidence 34455555555555542 122345555566666655542223332 2555556666666555211 134455555555
Q ss_pred CCEEeccCCCCC-ccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchh
Q 039535 456 LELLDISHSSIE-ELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLI 534 (769)
Q Consensus 456 L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (769)
|++|++++|.++ .+|..+..+++|+.|++++|...+.+|.. +..+++|+.|++++|.+. ...+
T Consensus 286 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~n~l~---------------~~~p 349 (968)
T PLN00113 286 LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA-LTSLPRLQVLQLWSNKFS---------------GEIP 349 (968)
T ss_pred cCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh-HhcCCCCCEEECcCCCCc---------------CcCC
Confidence 666666655555 45555555556666666555544444443 555556666666555543 2234
Q ss_pred hhhhcCCCceEEEEEeCChhh-HHHHHhc---------------------ccccccceeEEEeccCCCcccccccccccc
Q 039535 535 QELLGLKYLEVLELTLGSYHA-LQILLSS---------------------NKLKSCIRSLLLFGFRGTKYFIDATAFADL 592 (769)
Q Consensus 535 ~~l~~l~~L~~l~l~~~~~~~-~~~l~~~---------------------~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~ 592 (769)
..++.+++|+.|+++.+.+.. ....... ..-.++|+.|.+.++......+ ..+..+
T Consensus 350 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p--~~~~~l 427 (968)
T PLN00113 350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP--SEFTKL 427 (968)
T ss_pred hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC--hhHhcC
Confidence 455555666666655444321 0000000 0011234444443333222111 233444
Q ss_pred ccccceeecc-------------ccCcceEeeeeeccccccCCCccccccceEeecCcccccccc-cccccCCccEEeec
Q 039535 593 KHLNELQIHD-------------CRGLEELKIDYTEIAQKRREPFVFRSLRRVTMVSCHKLKDLT-FLVFAPNLKSISLG 658 (769)
Q Consensus 593 ~~L~~L~l~~-------------~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~l~~l~~L~~L~l~ 658 (769)
++|+.|++++ +++|+.+++++|.+.+..|.....++|+.|++++|.....++ .+..+++|+.|+|+
T Consensus 428 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls 507 (968)
T PLN00113 428 PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS 507 (968)
T ss_pred CCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECc
Confidence 4444444433 234444455555444444433334455555555553222222 24445555555555
Q ss_pred CChhhhhhhccCccCCcccccCCCCCCCcccccccccccccccccCCCCCCCCcceEeecCCccCCCcCCCCCc-ccccc
Q 039535 659 DCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALKSIYWKPLPFTYLKEMVVNGCDQLKKLPLDSSC-AEERK 737 (769)
Q Consensus 659 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~-~~l~~ 737 (769)
+|.... .+|. .+..+++|+.|+|++|.....+|.....+++|+.|++++|.-...+|..... .+|+.
T Consensus 508 ~N~l~~---------~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 575 (968)
T PLN00113 508 ENKLSG---------EIPD---ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ 575 (968)
T ss_pred CCccee---------eCCh---HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCE
Confidence 543321 2233 3446779999999997655667777778899999999999877788876654 77899
Q ss_pred eEEeccc
Q 039535 738 FVIRGEA 744 (769)
Q Consensus 738 ~~i~~~~ 744 (769)
+.+++|.
T Consensus 576 l~ls~N~ 582 (968)
T PLN00113 576 VNISHNH 582 (968)
T ss_pred EeccCCc
Confidence 9998664
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=5.7e-21 Score=229.95 Aligned_cols=322 Identities=20% Similarity=0.269 Sum_probs=163.4
Q ss_pred ceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEec
Q 039535 382 NVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDI 461 (769)
Q Consensus 382 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l 461 (769)
+++.|.+.++.+..++..-...+|+.|++.+|. +..++.+ +..+++|++|+++++. .+..+| .+..+++|++|++
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~-l~~L~~~-~~~l~~Lk~L~Ls~~~--~l~~ip-~ls~l~~Le~L~L 664 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSK-LEKLWDG-VHSLTGLRNIDLRGSK--NLKEIP-DLSMATNLETLKL 664 (1153)
T ss_pred ccEEEEecCCCCCCCCCcCCccCCcEEECcCcc-ccccccc-cccCCCCCEEECCCCC--CcCcCC-ccccCCcccEEEe
Confidence 355555555544444333334555555555444 4444433 3445555555555442 233333 2444555555555
Q ss_pred cCC-CCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCc-ccccc--ccc-cccCCc-cchhh
Q 039535 462 SHS-SIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDR-FHEAS--EDS-VLFGGG-EVLIQ 535 (769)
Q Consensus 462 ~~~-~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~-~~~~~--~~~-~~~~~~-~~~~~ 535 (769)
++| .+.++|..++.+++|+.|++++|..++.+|.. + ++++|++|++++|.... ++... ... .+.... ...+.
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~ 742 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPS 742 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccc
Confidence 554 33455555555555555555555555555542 1 45555555555543221 00000 000 000000 00111
Q ss_pred hhhcCCCceEEEEEeCChhhHHH----H-HhcccccccceeEEEeccCCCccccccccccccccccceeeccccCcceEe
Q 039535 536 ELLGLKYLEVLELTLGSYHALQI----L-LSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGLEELK 610 (769)
Q Consensus 536 ~l~~l~~L~~l~l~~~~~~~~~~----l-~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~ 610 (769)
. ..+++|..|.+.......+.. + ........+|+.|.++++......+ ..++++++|+.|+|++|..++.++
T Consensus 743 ~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP--~si~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 743 N-LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP--SSIQNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred c-ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC--hhhhCCCCCCEEECCCCCCcCeeC
Confidence 1 134445544443211110000 0 0001123467777777775544433 467778888888888776555443
Q ss_pred ------------eeeeccccccCCCccccccceEeecCcccccccc-cccccCCccEEeecCChhhhhhhccCccCCccc
Q 039535 611 ------------IDYTEIAQKRREPFVFRSLRRVTMVSCHKLKDLT-FLVFAPNLKSISLGDCDALEEIISVGKFAEVPE 677 (769)
Q Consensus 611 ------------l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 677 (769)
++++..-...| ....+|+.|+|.++ .++.+| .+..+++|+.|++++|..++.++.
T Consensus 820 ~~~~L~sL~~L~Ls~c~~L~~~p--~~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~--------- 887 (1153)
T PLN03210 820 TGINLESLESLDLSGCSRLRTFP--DISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL--------- 887 (1153)
T ss_pred CCCCccccCEEECCCCCcccccc--ccccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCc---------
Confidence 22221100011 12356677777666 355554 467788999999999988776532
Q ss_pred ccCCCCCCCcccccccccccccccccCCC-------------CCCCCcceEeecCCccCCCcCC
Q 039535 678 MMGHLSPFENLQNLDLSYLLALKSIYWKP-------------LPFTYLKEMVVNGCDQLKKLPL 728 (769)
Q Consensus 678 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-------------~~~~~L~~L~i~~C~~L~~lp~ 728 (769)
....+++|+.|++++|..|+.++... ..+|....+.+.+|.+|..-+.
T Consensus 888 ---~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~ 948 (1153)
T PLN03210 888 ---NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEAL 948 (1153)
T ss_pred ---ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhh
Confidence 34467799999999999998765422 1245556678889988876554
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=8.1e-23 Score=209.44 Aligned_cols=341 Identities=19% Similarity=0.228 Sum_probs=253.2
Q ss_pred ceEEEEcCCccccCCC-CCCCcceeEEEEeecccccc-CCCCCCCCceEEEeecccc-hhcccCcccccCCcccEEEeec
Q 039535 361 INFLVCAGAGLKEAPD-VKGWENVRRLSLMQNQIKVL-SEVPTCPHLLTLFLDFNRE-LMMIAGGYFQFMPSLKVLKISN 437 (769)
Q Consensus 361 ~~~~~~~~~~~~~~~~-~~~~~~l~~l~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~-~~~i~~~~~~~l~~L~~L~l~~ 437 (769)
..++....-++..+|. +..+.+|++|++.+|++..+ ..++.++.||.+.+..|.. -..||+.+| .+..|..|+||.
T Consensus 34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLSh 112 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSH 112 (1255)
T ss_pred eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecch
Confidence 5677777777777763 56678899999999988555 4578899999999988873 357888744 599999999999
Q ss_pred cCccccccCCccccCCCCCCEEeccCCCCCccchh-hhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCc
Q 039535 438 IGYFNVLKLPLGMSKLGSLELLDISHSSIEELPEE-LKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDR 516 (769)
Q Consensus 438 ~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~ 516 (769)
| .+..+|..+.+-+++-.|+|++|+|.+||.. +.+++-|-+|||++|. +..+|+. +..+.+|++|.+++|+...
T Consensus 113 N---qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ-~RRL~~LqtL~Ls~NPL~h 187 (1255)
T KOG0444|consen 113 N---QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ-IRRLSMLQTLKLSNNPLNH 187 (1255)
T ss_pred h---hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHH-HHHHhhhhhhhcCCChhhH
Confidence 9 8889999999999999999999999999987 5688999999999997 8999998 8999999999999998753
Q ss_pred cccccccccccCCccchhhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCcccccccccccccccc
Q 039535 517 FHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLN 596 (769)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~ 596 (769)
+ -...+..+++|+.|.++..+-+ +..+.....-..+|..++++..+.-... .-+-++++|+
T Consensus 188 f---------------QLrQLPsmtsL~vLhms~TqRT-l~N~Ptsld~l~NL~dvDlS~N~Lp~vP---ecly~l~~Lr 248 (1255)
T KOG0444|consen 188 F---------------QLRQLPSMTSLSVLHMSNTQRT-LDNIPTSLDDLHNLRDVDLSENNLPIVP---ECLYKLRNLR 248 (1255)
T ss_pred H---------------HHhcCccchhhhhhhcccccch-hhcCCCchhhhhhhhhccccccCCCcch---HHHhhhhhhh
Confidence 2 3444556666777777654421 1111111111234555555444333222 3666778888
Q ss_pred ceeeccc------------cCcceEeeeeeccccccCCCccccccceEeecCcccccc--cc-cccccCCccEEeecCCh
Q 039535 597 ELQIHDC------------RGLEELKIDYTEIAQKRREPFVFRSLRRVTMVSCHKLKD--LT-FLVFAPNLKSISLGDCD 661 (769)
Q Consensus 597 ~L~l~~~------------~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~--l~-~l~~l~~L~~L~l~~~~ 661 (769)
.|+||++ .+++.|+++.|.+..++.....+++|++|++.+|. ++. +| .++.+.+|+++..++|
T Consensus 249 rLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~Nk-L~FeGiPSGIGKL~~Levf~aanN- 326 (1255)
T KOG0444|consen 249 RLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNK-LTFEGIPSGIGKLIQLEVFHAANN- 326 (1255)
T ss_pred eeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCc-ccccCCccchhhhhhhHHHHhhcc-
Confidence 8888875 37778888888888888888888899999888884 332 44 4888888888887764
Q ss_pred hhhhhhccCccCCcccccCCCCCCCcccccccccccccccccCCCCCCCCcceEeecCCccCCCcCCCCCc-ccccceEE
Q 039535 662 ALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALKSIYWKPLPFTYLKEMVVNGCDQLKKLPLDSSC-AEERKFVI 740 (769)
Q Consensus 662 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~-~~l~~~~i 740 (769)
.+ .-+|+. +..+++|+.|.|+. +.|-.+|..+.-++-|+.|+++..|+|---|..... .+++.-.|
T Consensus 327 ~L---------ElVPEg---lcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 327 KL---------ELVPEG---LCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred cc---------ccCchh---hhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence 22 334444 44566999999976 788889998888999999999999999876655544 55555544
Q ss_pred e
Q 039535 741 R 741 (769)
Q Consensus 741 ~ 741 (769)
.
T Consensus 394 D 394 (1255)
T KOG0444|consen 394 D 394 (1255)
T ss_pred c
Confidence 3
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=1.4e-21 Score=200.53 Aligned_cols=329 Identities=19% Similarity=0.288 Sum_probs=243.3
Q ss_pred CCCcceeEEEEeeccccccC-CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCC
Q 039535 378 KGWENVRRLSLMQNQIKVLS-EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSL 456 (769)
Q Consensus 378 ~~~~~l~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L 456 (769)
..++.++.|.|....+..++ .++.|.+|+.|.+++|. +..+-.+ ++.++.||.+.+..|.. .-..+|..+..+..|
T Consensus 29 ~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGE-Ls~Lp~LRsv~~R~N~L-KnsGiP~diF~l~dL 105 (1255)
T KOG0444|consen 29 EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ-LISVHGE-LSDLPRLRSVIVRDNNL-KNSGIPTDIFRLKDL 105 (1255)
T ss_pred HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhh-hHhhhhh-hccchhhHHHhhhcccc-ccCCCCchhcccccc
Confidence 34577899999988886655 57899999999999998 5455444 88899999999999843 234689999999999
Q ss_pred CEEeccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhh
Q 039535 457 ELLDISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQE 536 (769)
Q Consensus 457 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (769)
..|+|++|++++.|..+...+++.+|+|++|+ +..+|..++-++..|-.|++++|.... +|..
T Consensus 106 t~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~----------------LPPQ 168 (1255)
T KOG0444|consen 106 TILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEM----------------LPPQ 168 (1255)
T ss_pred eeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhh----------------cCHH
Confidence 99999999999999999999999999999997 899999888899999999999998754 7788
Q ss_pred hhcCCCceEEEEEeCChhhH--HHHHhcccccccceeEEEeccCCCccccccccccccccccceeeccc-----------
Q 039535 537 LLGLKYLEVLELTLGSYHAL--QILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDC----------- 603 (769)
Q Consensus 537 l~~l~~L~~l~l~~~~~~~~--~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~----------- 603 (769)
...+.+|++|.++.+..... ..+.+ ..+|..|.+++....-. .+..++..+.||..+++|.+
T Consensus 169 ~RRL~~LqtL~Ls~NPL~hfQLrQLPs----mtsL~vLhms~TqRTl~-N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~ 243 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNPLNHFQLRQLPS----MTSLSVLHMSNTQRTLD-NIPTSLDDLHNLRDVDLSENNLPIVPECLYK 243 (1255)
T ss_pred HHHHhhhhhhhcCCChhhHHHHhcCcc----chhhhhhhcccccchhh-cCCCchhhhhhhhhccccccCCCcchHHHhh
Confidence 89999999999997764322 22211 13455555555443322 22346666777777776652
Q ss_pred -cCcceEeeeeeccccccCCCccccccceEeecCccccccccc-ccccCCccEEeecCChhhhhhhccCccCCcccccCC
Q 039535 604 -RGLEELKIDYTEIAQKRREPFVFRSLRRVTMVSCHKLKDLTF-LVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGH 681 (769)
Q Consensus 604 -~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 681 (769)
++|..|++++|.++.+......-.+|+.|+|+.| .++.+|. +..+++|+.|.+.+|.. .+.+||+.++.
T Consensus 244 l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL--------~FeGiPSGIGK 314 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKL--------TFEGIPSGIGK 314 (1255)
T ss_pred hhhhheeccCcCceeeeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcc--------cccCCccchhh
Confidence 3556666666666555444444456666666666 3455443 55566666665544321 34577776664
Q ss_pred CCCCCcccccccccccccccccCCCCCCCCcceEeecCCccCCCcCCCCCc-ccccceEEecccc
Q 039535 682 LSPFENLQNLDLSYLLALKSIYWKPLPFTYLKEMVVNGCDQLKKLPLDSSC-AEERKFVIRGEAH 745 (769)
Q Consensus 682 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~-~~l~~~~i~~~~~ 745 (769)
+..|+.+..++ ++|.-+|.+...|++|+.|.+ +|++|-.||..... +.++.+++..+++
T Consensus 315 ---L~~Levf~aan-N~LElVPEglcRC~kL~kL~L-~~NrLiTLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 315 ---LIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKL-DHNRLITLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred ---hhhhHHHHhhc-cccccCchhhhhhHHHHHhcc-cccceeechhhhhhcCCcceeeccCCcC
Confidence 45899999998 699999999999999999999 68899999988755 7788888775544
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=6.8e-20 Score=187.10 Aligned_cols=345 Identities=19% Similarity=0.240 Sum_probs=188.7
Q ss_pred ccccceEEEEcCCccccCCC----CCCCcceeEEEEeeccccccC--CCCCCCCceEEEeecccchhcccCcccccCCcc
Q 039535 357 EKEKINFLVCAGAGLKEAPD----VKGWENVRRLSLMQNQIKVLS--EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSL 430 (769)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L 430 (769)
|+-.-..+.|++..++.+.. ..-++..+.|++++|.+..+. .|.++++|+.+++.+|. +..||. +.....+|
T Consensus 50 c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~-f~~~sghl 127 (873)
T KOG4194|consen 50 CPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPR-FGHESGHL 127 (873)
T ss_pred CCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccch-hhhccc-ccccccce
Confidence 44445555555554444311 011234555666666664442 34556666666666555 555554 12333446
Q ss_pred cEEEeeccCccccccC-CccccCCCCCCEEeccCCCCCccchh-hhcCCCCceeeccCCCcccccchHHhcCCCcCcEEE
Q 039535 431 KVLKISNIGYFNVLKL-PLGMSKLGSLELLDISHSSIEELPEE-LKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLR 508 (769)
Q Consensus 431 ~~L~l~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~ 508 (769)
+.|+|.+| .+..+ ...+..++.|+.|+|+.|.|+++|.. +..-.++++|+|++|. ++.+..+.|..+.+|-.|.
T Consensus 128 ~~L~L~~N---~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 128 EKLDLRHN---LISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred eEEeeecc---ccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeee
Confidence 66666666 33333 23445556666666666666655543 3333556666666665 5555444455666666666
Q ss_pred eeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCChhhHHHH-HhcccccccceeEEEeccCCCccccccc
Q 039535 509 MFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQIL-LSSNKLKSCIRSLLLFGFRGTKYFIDAT 587 (769)
Q Consensus 509 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l-~~~~~~~~~l~~L~l~~~~~~~~~~~~~ 587 (769)
++.|.++.+ .+..+..+++|+.|++..+.+.-.+.+ +.. ..+++.|.+.....-+..+ .
T Consensus 204 LsrNrittL---------------p~r~Fk~L~~L~~LdLnrN~irive~ltFqg---L~Sl~nlklqrN~I~kL~D--G 263 (873)
T KOG4194|consen 204 LSRNRITTL---------------PQRSFKRLPKLESLDLNRNRIRIVEGLTFQG---LPSLQNLKLQRNDISKLDD--G 263 (873)
T ss_pred cccCccccc---------------CHHHhhhcchhhhhhccccceeeehhhhhcC---chhhhhhhhhhcCcccccC--c
Confidence 666666532 344455677777777665554333222 111 1233444443332222222 3
Q ss_pred cccccccccceeecc-------------ccCcceEeeeeeccccccCCC-ccccccceEeecCccccccccc--ccccCC
Q 039535 588 AFADLKHLNELQIHD-------------CRGLEELKIDYTEIAQKRREP-FVFRSLRRVTMVSCHKLKDLTF--LVFAPN 651 (769)
Q Consensus 588 ~l~~~~~L~~L~l~~-------------~~~l~~l~l~~~~~~~~~~~~-~~~~~L~~L~L~~~~~l~~l~~--l~~l~~ 651 (769)
.|-.+.++++|+|+. +..|+.|++++|.|..+.+.. ..+++|+.|+|++| .++.++. +..+..
T Consensus 264 ~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~ 342 (873)
T KOG4194|consen 264 AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQ 342 (873)
T ss_pred ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc-ccccCChhHHHHHHH
Confidence 555566666666543 345566666666666554444 23456666666666 3555543 555666
Q ss_pred ccEEeecCChhhhhhhccCccCCcccccCCCCCCCcccccccccccccccccC----CCCCCCCcceEeecCCccCCCcC
Q 039535 652 LKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALKSIYW----KPLPFTYLKEMVVNGCDQLKKLP 727 (769)
Q Consensus 652 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~----~~~~~~~L~~L~i~~C~~L~~lp 727 (769)
|+.|+|++|+ ++. +.+ +.+.++.+|++|||++ +.++..-+ ....+++|.+|.+.|. +|+.+|
T Consensus 343 Le~LnLs~Ns-i~~---------l~e--~af~~lssL~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~ 408 (873)
T KOG4194|consen 343 LEELNLSHNS-IDH---------LAE--GAFVGLSSLHKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIP 408 (873)
T ss_pred hhhhcccccc-hHH---------HHh--hHHHHhhhhhhhcCcC-CeEEEEEecchhhhccchhhhheeecCc-eeeecc
Confidence 6666666642 222 212 1355677999999998 46654332 2335899999999765 899999
Q ss_pred CCCCc--ccccceEEec
Q 039535 728 LDSSC--AEERKFVIRG 742 (769)
Q Consensus 728 ~~~~~--~~l~~~~i~~ 742 (769)
.--.. ++||.+.+.+
T Consensus 409 krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 409 KRAFSGLEALEHLDLGD 425 (873)
T ss_pred hhhhccCcccceecCCC
Confidence 76544 7777777753
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=3.6e-20 Score=180.94 Aligned_cols=326 Identities=22% Similarity=0.232 Sum_probs=236.6
Q ss_pred EcCCccccC-CCCCCCcceeEEEEeecccccc-CCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCcccc
Q 039535 366 CAGAGLKEA-PDVKGWENVRRLSLMQNQIKVL-SEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNV 443 (769)
Q Consensus 366 ~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~ 443 (769)
++...+.+. +++..+..+..+.-.+|++..+ .++..+.+|..|++.+|. +...|+.... |+.|+.|+...| .+
T Consensus 121 ~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~-m~~L~~ld~~~N---~L 195 (565)
T KOG0472|consen 121 CSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIA-MKRLKHLDCNSN---LL 195 (565)
T ss_pred ccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHH-HHHHHhcccchh---hh
Confidence 333344444 4455666777777778888544 467888999999999998 6677766444 999999999998 88
Q ss_pred ccCCccccCCCCCCEEeccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCcccccccc
Q 039535 444 LKLPLGMSKLGSLELLDISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASED 523 (769)
Q Consensus 444 ~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 523 (769)
..+|+.++.+.+|.-|++++|+|..+| .+..|..|.+|+++.|+ ++-+|.+...++.+|..|++..|+..+
T Consensus 196 ~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNklke------- 266 (565)
T KOG0472|consen 196 ETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNKLKE------- 266 (565)
T ss_pred hcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeecccccccc-------
Confidence 899999999999999999999999999 68889999999999997 888999877799999999999999765
Q ss_pred ccccCCccchhhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccc------------------
Q 039535 524 SVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFID------------------ 585 (769)
Q Consensus 524 ~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~------------------ 585 (769)
.|..+-.+.+|+.|+++.+.++.++.-++.. .+++|.+.|....+....
T Consensus 267 ---------~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl----hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~ 333 (565)
T KOG0472|consen 267 ---------VPDEICLLRSLERLDLSNNDISSLPYSLGNL----HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIK 333 (565)
T ss_pred ---------CchHHHHhhhhhhhcccCCccccCCcccccc----eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhc
Confidence 6777888999999999999888776654433 466666666432221110
Q ss_pred ---------------------cccccccccccceeeccc---------------cCcceEeeeeeccccc----------
Q 039535 586 ---------------------ATAFADLKHLNELQIHDC---------------RGLEELKIDYTEIAQK---------- 619 (769)
Q Consensus 586 ---------------------~~~l~~~~~L~~L~l~~~---------------~~l~~l~l~~~~~~~~---------- 619 (769)
........+.+.|++++- ...+.++++.|++.++
T Consensus 334 ~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkel 413 (565)
T KOG0472|consen 334 DDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKEL 413 (565)
T ss_pred cCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHH
Confidence 011122344555555441 1234445555544422
Q ss_pred --------------cCCCccccccceEeecCccccccccc-ccccCCccEEeecCCh------------hhhhhh-ccCc
Q 039535 620 --------------RREPFVFRSLRRVTMVSCHKLKDLTF-LVFAPNLKSISLGDCD------------ALEEII-SVGK 671 (769)
Q Consensus 620 --------------~~~~~~~~~L~~L~L~~~~~l~~l~~-l~~l~~L~~L~l~~~~------------~l~~~~-~~~~ 671 (769)
+...+.+++|..|+|++| .+.++|. ++.+..|+.|+++.+. .++.+. .++.
T Consensus 414 vT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nq 492 (565)
T KOG0472|consen 414 VTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQ 492 (565)
T ss_pred HHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccc
Confidence 223467899999999999 5778774 7788889999999873 122222 2355
Q ss_pred cCCcccccCCCCCCCcccccccccccccccccCCCCCCCCcceEeecCCcc
Q 039535 672 FAEVPEMMGHLSPFENLQNLDLSYLLALKSIYWKPLPFTYLKEMVVNGCDQ 722 (769)
Q Consensus 672 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~C~~ 722 (769)
++.++.. .+.++.+|++|||.+ +.+..+|...++|.+|++|.++|.|-
T Consensus 493 i~~vd~~--~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 493 IGSVDPS--GLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred ccccChH--HhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCcc
Confidence 5555544 456777889999988 68888988888899999999988754
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.64 E-value=1.2e-18 Score=170.50 Aligned_cols=152 Identities=27% Similarity=0.344 Sum_probs=95.6
Q ss_pred CCCCcceeEEEEeecccccc-CCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCC
Q 039535 377 VKGWENVRRLSLMQNQIKVL-SEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGS 455 (769)
Q Consensus 377 ~~~~~~l~~l~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~ 455 (769)
...+..+..+.+++|+...+ ++++++..+..|++++|. +..+|.. .....+|+.++.+.| ....+|+.++.+..
T Consensus 64 l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~-i~s~~~l~~l~~s~n---~~~el~~~i~~~~~ 138 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQ-IGSLISLVKLDCSSN---ELKELPDSIGRLLD 138 (565)
T ss_pred hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch-HhhccHH-Hhhhhhhhhhhcccc---ceeecCchHHHHhh
Confidence 34455666677776666333 345666667777777666 5566554 556666777777766 66666677777777
Q ss_pred CCEEeccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhh
Q 039535 456 LELLDISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQ 535 (769)
Q Consensus 456 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (769)
|..|+..+|+|+.+|..+.++.+|..+++.+|. +..+|+..+ +|+.|++|+..+|-..+ +|.
T Consensus 139 l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i-~m~~L~~ld~~~N~L~t----------------lP~ 200 (565)
T KOG0472|consen 139 LEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHI-AMKRLKHLDCNSNLLET----------------LPP 200 (565)
T ss_pred hhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHH-HHHHHHhcccchhhhhc----------------CCh
Confidence 777777777777777777777777777777665 555655533 36677777766665543 455
Q ss_pred hhhcCCCceEEEEEeC
Q 039535 536 ELLGLKYLEVLELTLG 551 (769)
Q Consensus 536 ~l~~l~~L~~l~l~~~ 551 (769)
.++.+.+|..|++..+
T Consensus 201 ~lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRN 216 (565)
T ss_pred hhcchhhhHHHHhhhc
Confidence 5555555555554433
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.59 E-value=3.3e-17 Score=176.85 Aligned_cols=348 Identities=19% Similarity=0.249 Sum_probs=195.8
Q ss_pred ceeEEEEeeccccccC-CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEe
Q 039535 382 NVRRLSLMQNQIKVLS-EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLD 460 (769)
Q Consensus 382 ~l~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~ 460 (769)
+|.+|++++|.+..++ .+..+.+|+.|.++.|. +..+|.+ ..++++|+++.|.+| ....+|.++..+.+|++|+
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~-i~~vp~s-~~~~~~l~~lnL~~n---~l~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY-IRSVPSS-CSNMRNLQYLNLKNN---RLQSLPASISELKNLQYLD 120 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhh-HhhCchh-hhhhhcchhheeccc---hhhcCchhHHhhhcccccc
Confidence 4778888888775444 46677888888888665 7777744 777888888888888 7777888888888888888
Q ss_pred ccCCCCCccchhhhcCCCCceeeccCCCccc-------------------ccchH------------------HhcCCCc
Q 039535 461 ISHSSIEELPEELKLLVNLKCLNLRWTDVLN-------------------KIPRQ------------------LISNLSR 503 (769)
Q Consensus 461 l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~-------------------~lp~~------------------~~~~l~~ 503 (769)
++.|.+..+|..+..++.++.++.++|..+. .++.+ .+..+.+
T Consensus 121 lS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~ 200 (1081)
T KOG0618|consen 121 LSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLAN 200 (1081)
T ss_pred cchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccc
Confidence 8888877777665555555555555542111 11111 0222333
Q ss_pred CcEEEeeccCCCccccccccc--cccCCccc-hhhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCC
Q 039535 504 VRVLRMFATGYDRFHEASEDS--VLFGGGEV-LIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGT 580 (769)
Q Consensus 504 L~~L~l~~~~~~~~~~~~~~~--~~~~~~~~-~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~ 580 (769)
|+.++...|+.+.+....+.. ........ ....-....+|+.++++.+....++.+..... +++.+........
T Consensus 201 l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~---nle~l~~n~N~l~ 277 (1081)
T KOG0618|consen 201 LEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACA---NLEALNANHNRLV 277 (1081)
T ss_pred hhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcc---cceEecccchhHH
Confidence 333333333333222111110 00000000 11111223466777777776666665543332 4444444333222
Q ss_pred cccc--------------------ccccccccccccceeecccc--------------CcceEeeeeeccccccCC-Ccc
Q 039535 581 KYFI--------------------DATAFADLKHLNELQIHDCR--------------GLEELKIDYTEIAQKRRE-PFV 625 (769)
Q Consensus 581 ~~~~--------------------~~~~l~~~~~L~~L~l~~~~--------------~l~~l~l~~~~~~~~~~~-~~~ 625 (769)
.... ......++++|++|+|..+. .+..+..+.|.+...+.. ...
T Consensus 278 ~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~ 357 (1081)
T KOG0618|consen 278 ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN 357 (1081)
T ss_pred hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchh
Confidence 2111 11233445555555554421 111112222222222211 134
Q ss_pred ccccceEeecCcccccc--cccccccCCccEEeecCCh-------------hhhhh-hccCccCCcccccCCCCCCCccc
Q 039535 626 FRSLRRVTMVSCHKLKD--LTFLVFAPNLKSISLGDCD-------------ALEEI-ISVGKFAEVPEMMGHLSPFENLQ 689 (769)
Q Consensus 626 ~~~L~~L~L~~~~~l~~--l~~l~~l~~L~~L~l~~~~-------------~l~~~-~~~~~~~~~~~~~~~~~~~~~L~ 689 (769)
++.|+.|++.+|. +++ +|.+..+++|++|+|++|. .++++ .+.|.++.+|..+. .+..|+
T Consensus 358 ~~~Lq~LylanN~-Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva---~~~~L~ 433 (1081)
T KOG0618|consen 358 HAALQELYLANNH-LTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVA---NLGRLH 433 (1081)
T ss_pred hHHHHHHHHhcCc-ccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHH---hhhhhH
Confidence 6778999999985 555 6778889999999999872 22222 34455555554443 334667
Q ss_pred ccccccccccccccCCCCCCCCcceEeecCCccCCCcCCCCCc--ccccceEEeccc
Q 039535 690 NLDLSYLLALKSIYWKPLPFTYLKEMVVNGCDQLKKLPLDSSC--AEERKFVIRGEA 744 (769)
Q Consensus 690 ~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~--~~l~~~~i~~~~ 744 (769)
+|...+ +.+..+| ....++.|+.+++ +|++|+.+-..... ++|+.++++|+.
T Consensus 434 tL~ahs-N~l~~fP-e~~~l~qL~~lDl-S~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 434 TLRAHS-NQLLSFP-ELAQLPQLKVLDL-SCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred HHhhcC-Cceeech-hhhhcCcceEEec-ccchhhhhhhhhhCCCcccceeeccCCc
Confidence 776666 4667777 5567888999999 57788875444433 678888888876
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=3.1e-14 Score=159.24 Aligned_cols=135 Identities=23% Similarity=0.206 Sum_probs=99.2
Q ss_pred cceEEEEcCCccccCCCCCCCcceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccC
Q 039535 360 KINFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIG 439 (769)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~ 439 (769)
....+.+++.++.++|... .++++.|.+.+|.+..++.. +++|++|++++|. +..+|.. .++|+.|++++|
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~-LtsLP~l----p~sL~~L~Ls~N- 272 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQ-LTSLPVL----PPGLLELSIFSN- 272 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCc-cCcccCc----ccccceeeccCC-
Confidence 3556677777888887633 35788999999888777643 5789999999886 7677642 468889999988
Q ss_pred ccccccCCccccCCCCCCEEeccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCc
Q 039535 440 YFNVLKLPLGMSKLGSLELLDISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDR 516 (769)
Q Consensus 440 ~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~ 516 (769)
.+..+|... .+|+.|++++|+++.+|.. +++|+.|++++|+ +..+|.. ..+|+.|.+++|.+..
T Consensus 273 --~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l----p~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 273 --PLTHLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL----PSELCKLWAYNNQLTS 336 (788)
T ss_pred --chhhhhhch---hhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC----cccccccccccCcccc
Confidence 566666432 5688889999998888753 4789999999886 6667652 3457778888887664
No 15
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.49 E-value=8.8e-12 Score=134.32 Aligned_cols=298 Identities=15% Similarity=0.075 Sum_probs=174.9
Q ss_pred CCCccccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHH
Q 039535 18 PTERTLVGLQSQLEQVWRCLIE----ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQED 93 (769)
Q Consensus 18 ~~~~~~vgR~~~~~~l~~~l~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 93 (769)
..|+.|+||+++++++...+.+ +..+.+.|+|++|+|||++++.+++++.+ ......++++++....+...++..
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~-~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE-IAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEECCcCCCHHHHHHH
Confidence 3567899999999999999853 34467899999999999999999998832 222346777888777788899999
Q ss_pred HHHHcCCCCCCCCCccHHHHHHHHHHHhc--cceEEEEEccccccc------ccccccccCCCCCCCCcEEEEEcCchhh
Q 039535 94 IGKRIGLVDDSWKSKSVEEKALDIFRSLR--EKRIVLLLDDIWERL------DLTKVGVPLPGPKNTTSKVVFTTRFFDV 165 (769)
Q Consensus 94 l~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~~------~~~~~~~~l~~~~~~~~~iiittr~~~~ 165 (769)
++.++............++....+.+.+. +++++||||+++... .+..+.............+|.++.....
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcch
Confidence 99998753222234456777777777774 457899999997642 1222222221011113335555554432
Q ss_pred hccc-------CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHH----hCCcchHHHHHHHHh--c--
Q 039535 166 CGSM-------EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKK----CGGLPLALVTIGRAM--A-- 230 (769)
Q Consensus 166 ~~~~-------~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~----~~G~Plai~~~~~~l--~-- 230 (769)
...+ .....+.+++++.++..+++..++.... ......++.++.+++. .|+.+.|+..+.... .
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~-~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGF-YPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhc-ccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 2211 1124689999999999999998874321 0011112333344444 455666666654322 1
Q ss_pred -CC--CCHHHHHHHHHHHhcccCCCCCCccchhhHHHhhhcCCCccccchhhceecccCC--CccccHHHHHH--HHhhc
Q 039535 231 -SK--KTAEEWRHAIEELGRSASEFPGLGKEVYPVLKFSYDSLPNETIRSCFLYCCLYPE--DYGILKWDLID--CWIGE 303 (769)
Q Consensus 231 -~~--~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~l~~~~~~L~~~~~~~~~~~~~~~p~--~~~i~~~~l~~--~w~~~ 303 (769)
+. -+.+++..+++... ...+...+..|+. +.+..+..++..-+ ...+....+.. ..+++
T Consensus 265 ~~~~~I~~~~v~~a~~~~~-------------~~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~ 330 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKSE-------------IVHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCE 330 (394)
T ss_pred cCCCCcCHHHHHHHHHHHH-------------HHHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 11 24566666555441 1223445677777 55544443332211 12333333332 22222
Q ss_pred CccccCcccccccchhhhHHHHhhhcceeee
Q 039535 304 GFLEESNRFGAENRGYYIVGTLVHTCLLEEI 334 (769)
Q Consensus 304 g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 334 (769)
..-. . ........+++..|.+.|++...
T Consensus 331 ~~~~-~--~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 331 ELGY-E--PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HcCC-C--cCcHHHHHHHHHHHHhcCCeEEE
Confidence 1100 0 11234557789999999999764
No 16
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.48 E-value=2e-12 Score=155.52 Aligned_cols=295 Identities=14% Similarity=0.180 Sum_probs=188.2
Q ss_pred cCCCCccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC-CCCHHHHHHHH
Q 039535 16 ERPTERTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK-DPRLEKIQEDI 94 (769)
Q Consensus 16 ~~~~~~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~l 94 (769)
+|+.++++|-|.+.++++.+. ...++++|+||+|.||||++.+++++. . .++|+++.. +.++..+...+
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred CCCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHH
Confidence 455567889999888877653 456899999999999999999988653 2 589999864 45677777777
Q ss_pred HHHcCCCCCC-----------CCCccHHHHHHHHHHHhc--cceEEEEEccccccc--cccccc-ccCCCCCCCCcEEEE
Q 039535 95 GKRIGLVDDS-----------WKSKSVEEKALDIFRSLR--EKRIVLLLDDIWERL--DLTKVG-VPLPGPKNTTSKVVF 158 (769)
Q Consensus 95 ~~~l~~~~~~-----------~~~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~~--~~~~~~-~~l~~~~~~~~~iii 158 (769)
+..+....+. .........+..+...+. +++++||+||++... ....+. ..+. ....+.++|+
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~-~~~~~~~lv~ 157 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLR-HQPENLTLVV 157 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHH-hCCCCeEEEE
Confidence 7777422111 011233344444554443 679999999996432 222222 2222 2345678888
Q ss_pred EcCchhhhc--cc-CCCceEEee----cCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHhcC
Q 039535 159 TTRFFDVCG--SM-EAHRTFEVA----CLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAMAS 231 (769)
Q Consensus 159 ttr~~~~~~--~~-~~~~~~~l~----~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~ 231 (769)
|||...-.. .+ ......+++ +|+.+|+.+++....+... . .+.+..|.+.++|+|+++..++..+..
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~---~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI---E---AAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC---C---HHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 999743211 11 112345555 9999999999988765432 1 345778999999999999988877654
Q ss_pred CCC-HHHHHHHHHHHhcccCCCCCCccchhhHHHhh-hcCCCccccchhhceecccCCCccccHHHHHHHHhhcCccccC
Q 039535 232 KKT-AEEWRHAIEELGRSASEFPGLGKEVYPVLKFS-YDSLPNETIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEES 309 (769)
Q Consensus 232 ~~~-~~~~~~~l~~l~~~~~~~~~~~~~i~~~l~~~-~~~L~~~~~~~~~~~~~~~p~~~~i~~~~l~~~w~~~g~~~~~ 309 (769)
... .... ...+... ....+...+.-. ++.||+ ..+.++..+++++ .|+....-. .
T Consensus 232 ~~~~~~~~---~~~~~~~------~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~~l~~~------l---- 288 (903)
T PRK04841 232 NNSSLHDS---ARRLAGI------NASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMNDALIVR------V---- 288 (903)
T ss_pred CCCchhhh---hHhhcCC------CchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCHHHHHH------H----
Confidence 321 1111 1111100 012355544433 789999 7999999999986 333222211 1
Q ss_pred cccccccchhhhHHHHhhhcceee-e--cCCeEEEehhHHHHHHHHH
Q 039535 310 NRFGAENRGYYIVGTLVHTCLLEE-I--EDDKVKMHDVVRDMALWIA 353 (769)
Q Consensus 310 ~~~~~~~~~~~~l~~L~~~~ll~~-~--~~~~~~~h~lv~~~~~~~~ 353 (769)
...+...+.++.|.+.+++.. . +...|.+|++++++.....
T Consensus 289 ---~~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 289 ---TGEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ---cCCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 112334677999999999653 3 2347999999999998665
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.47 E-value=1.6e-13 Score=153.46 Aligned_cols=255 Identities=17% Similarity=0.152 Sum_probs=177.8
Q ss_pred ceeEEEEeeccccccCC-CCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEe
Q 039535 382 NVRRLSLMQNQIKVLSE-VPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLD 460 (769)
Q Consensus 382 ~l~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~ 460 (769)
+-..|+++.+.+..++. +. ++|+.|++.+|. +..+|.. +++|++|++++| .+..+|.. .++|++|+
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~-Lt~LP~l----p~~Lk~LdLs~N---~LtsLP~l---p~sL~~L~ 268 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNN-LTSLPAL----PPELRTLEVSGN---QLTSLPVL---PPGLLELS 268 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCc-CCCCCCC----CCCCcEEEecCC---ccCcccCc---ccccceee
Confidence 34567888888866654 33 589999999887 7777652 589999999999 66677743 36899999
Q ss_pred ccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcC
Q 039535 461 ISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGL 540 (769)
Q Consensus 461 l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 540 (769)
+++|.++.+|.. +.+|+.|++++|. +..+|. .+++|++|++++|.+..++ . ..
T Consensus 269 Ls~N~L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~----~p~~L~~LdLS~N~L~~Lp----------------~---lp 321 (788)
T PRK15387 269 IFSNPLTHLPAL---PSGLCKLWIFGNQ-LTSLPV----LPPGLQELSVSDNQLASLP----------------A---LP 321 (788)
T ss_pred ccCCchhhhhhc---hhhcCEEECcCCc-cccccc----cccccceeECCCCccccCC----------------C---Cc
Confidence 999999988763 3678899999997 777875 3578999999999877432 1 12
Q ss_pred CCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccccceeeccccCcceEeeeeecccccc
Q 039535 541 KYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGLEELKIDYTEIAQKR 620 (769)
Q Consensus 541 ~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~l~~~~~~~~~ 620 (769)
.+|+.|++..+.+..++. +..+|+.|+++++....... ...+|+ .|+++.|.+..++
T Consensus 322 ~~L~~L~Ls~N~L~~LP~------lp~~Lq~LdLS~N~Ls~LP~------lp~~L~-----------~L~Ls~N~L~~LP 378 (788)
T PRK15387 322 SELCKLWAYNNQLTSLPT------LPSGLQELSVSDNQLASLPT------LPSELY-----------KLWAYNNRLTSLP 378 (788)
T ss_pred ccccccccccCccccccc------cccccceEecCCCccCCCCC------CCcccc-----------eehhhccccccCc
Confidence 346667777666554332 23467778877654332211 012333 4445555555433
Q ss_pred CCCccccccceEeecCcccccccccccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCcccccccccccccc
Q 039535 621 REPFVFRSLRRVTMVSCHKLKDLTFLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALK 700 (769)
Q Consensus 621 ~~~~~~~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 700 (769)
. ...+|+.|++++| .++.+|.. .++|+.|++++|. + ..+|.. +.+|+.|++++ +.++
T Consensus 379 ~---l~~~L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~N~-L---------ssIP~l------~~~L~~L~Ls~-NqLt 435 (788)
T PRK15387 379 A---LPSGLKELIVSGN-RLTSLPVL--PSELKELMVSGNR-L---------TSLPML------PSGLLSLSVYR-NQLT 435 (788)
T ss_pred c---cccccceEEecCC-cccCCCCc--ccCCCEEEccCCc-C---------CCCCcc------hhhhhhhhhcc-Cccc
Confidence 2 2467999999998 46666653 4789999999864 2 233322 23688999999 5889
Q ss_pred cccCCCCCCCCcceEeecCCcc
Q 039535 701 SIYWKPLPFTYLKEMVVNGCDQ 722 (769)
Q Consensus 701 ~~~~~~~~~~~L~~L~i~~C~~ 722 (769)
.+|.....+++|+.|++++++-
T Consensus 436 ~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 436 RLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred ccChHHhhccCCCeEECCCCCC
Confidence 9998888899999999988853
No 18
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.43 E-value=3.3e-12 Score=138.40 Aligned_cols=298 Identities=17% Similarity=0.171 Sum_probs=203.7
Q ss_pred cccCCCCccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC-CCCHHHHHH
Q 039535 14 ADERPTERTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK-DPRLEKIQE 92 (769)
Q Consensus 14 ~~~~~~~~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~ 92 (769)
...|+.+...|-|.+.++.+-.. .+.+.++|.-|+|.||||++.+++... ..-..+.|.++.. +.++..+.+
T Consensus 12 ~~~P~~~~~~v~R~rL~~~L~~~---~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~ 84 (894)
T COG2909 12 LVRPVRPDNYVVRPRLLDRLRRA---NDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLS 84 (894)
T ss_pred cCCCCCcccccccHHHHHHHhcC---CCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHH
Confidence 33444567899999988887774 468899999999999999999999854 4556799998876 568999999
Q ss_pred HHHHHcCCCCCC-----------CCCccHHHHHHHHHHHhcc--ceEEEEEcccccc------cccccccccCCCCCCCC
Q 039535 93 DIGKRIGLVDDS-----------WKSKSVEEKALDIFRSLRE--KRIVLLLDDIWER------LDLTKVGVPLPGPKNTT 153 (769)
Q Consensus 93 ~l~~~l~~~~~~-----------~~~~~~~~~~~~l~~~l~~--~~~llvlDd~~~~------~~~~~~~~~l~~~~~~~ 153 (769)
.++..++...+. .........+..+...+.. +++++||||..-. ..++-+..+.| .+
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P----~~ 160 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAP----EN 160 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCC----CC
Confidence 999999754332 1234445566666665533 5899999998532 22333444444 57
Q ss_pred cEEEEEcCchhhhc--ccC-CCceEEee----cCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 154 SKVVFTTRFFDVCG--SME-AHRTFEVA----CLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 154 ~~iiittr~~~~~~--~~~-~~~~~~l~----~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
..+|+|||+..-.. .+. ....++++ .|+.+|+.++|....+..- -+..++.+++.++|.+-|+..++
T Consensus 161 l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~a 234 (894)
T COG2909 161 LTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIA 234 (894)
T ss_pred eEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHH
Confidence 88999999764321 111 12233333 4899999999999875433 13457899999999999999998
Q ss_pred HHhcCCCCHHHHHHHHHHHhcccCCCCCCccchhhH-HHhhhcCCCccccchhhceecccCCCccccHHHHHHHHhhcCc
Q 039535 227 RAMASKKTAEEWRHAIEELGRSASEFPGLGKEVYPV-LKFSYDSLPNETIRSCFLYCCLYPEDYGILKWDLIDCWIGEGF 305 (769)
Q Consensus 227 ~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~-l~~~~~~L~~~~~~~~~~~~~~~p~~~~i~~~~l~~~w~~~g~ 305 (769)
=..+++.+.+....-+.... +-+... ..--++.||+ ..+.+++.+++++.- . +.+
T Consensus 235 La~~~~~~~~q~~~~LsG~~----------~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f---~-~eL--------- 290 (894)
T COG2909 235 LALRNNTSAEQSLRGLSGAA----------SHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRF---N-DEL--------- 290 (894)
T ss_pred HHccCCCcHHHHhhhccchH----------HHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHh---h-HHH---------
Confidence 88875445444333221111 111111 2334789999 899999999887521 1 111
Q ss_pred cccCcccccccchhhhHHHHhhhcceeee---cCCeEEEehhHHHHHHHHHhh
Q 039535 306 LEESNRFGAENRGYYIVGTLVHTCLLEEI---EDDKVKMHDVVRDMALWIACE 355 (769)
Q Consensus 306 ~~~~~~~~~~~~~~~~l~~L~~~~ll~~~---~~~~~~~h~lv~~~~~~~~~~ 355 (769)
.+....++.+...+++|..++++-.. +...|++|.++.++.+.....
T Consensus 291 ---~~~Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 291 ---CNALTGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred ---HHHHhcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 11234566677789999999997543 677999999999998866544
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.43 E-value=3.9e-15 Score=161.05 Aligned_cols=278 Identities=24% Similarity=0.304 Sum_probs=172.5
Q ss_pred CCcceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCE
Q 039535 379 GWENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLEL 458 (769)
Q Consensus 379 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~ 458 (769)
.+..+..+....|.+..+. -.-++|+.|+.++|... .+... ..-.+|++++++.+ .+..+|.+++.|.+|+.
T Consensus 197 ~~~~l~~l~c~rn~ls~l~--~~g~~l~~L~a~~n~l~-~~~~~--p~p~nl~~~dis~n---~l~~lp~wi~~~~nle~ 268 (1081)
T KOG0618|consen 197 NLANLEVLHCERNQLSELE--ISGPSLTALYADHNPLT-TLDVH--PVPLNLQYLDISHN---NLSNLPEWIGACANLEA 268 (1081)
T ss_pred hccchhhhhhhhcccceEE--ecCcchheeeeccCcce-eeccc--cccccceeeecchh---hhhcchHHHHhcccceE
Confidence 3345555555555554332 23467788888878733 32221 22467899999998 77788888889999999
Q ss_pred EeccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhh
Q 039535 459 LDISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELL 538 (769)
Q Consensus 459 L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 538 (769)
|++.+|.++.+|..+...++|+.|++..|. +..+|+. .++++.|++|++..|.+..++.. .+.
T Consensus 269 l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~-le~~~sL~tLdL~~N~L~~lp~~---------------~l~ 331 (1081)
T KOG0618|consen 269 LNANHNRLVALPLRISRITSLVSLSAAYNE-LEYIPPF-LEGLKSLRTLDLQSNNLPSLPDN---------------FLA 331 (1081)
T ss_pred ecccchhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCc-ccccceeeeeeehhccccccchH---------------HHh
Confidence 999999999999999999999999999887 7888876 77799999999999988765421 111
Q ss_pred cCC-CceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccccceeeccc-------------c
Q 039535 539 GLK-YLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDC-------------R 604 (769)
Q Consensus 539 ~l~-~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-------------~ 604 (769)
.+. .|+.+..+.+....++.. .-+....|+.|.+.+..-..... ..+.++.+|+.|+++.+ +
T Consensus 332 v~~~~l~~ln~s~n~l~~lp~~--~e~~~~~Lq~LylanN~Ltd~c~--p~l~~~~hLKVLhLsyNrL~~fpas~~~kle 407 (1081)
T KOG0618|consen 332 VLNASLNTLNVSSNKLSTLPSY--EENNHAALQELYLANNHLTDSCF--PVLVNFKHLKVLHLSYNRLNSFPASKLRKLE 407 (1081)
T ss_pred hhhHHHHHHhhhhccccccccc--cchhhHHHHHHHHhcCcccccch--hhhccccceeeeeecccccccCCHHHHhchH
Confidence 111 122222222211111100 00111233334443333322222 36777788888887764 3
Q ss_pred CcceEeeeeeccccccCCCccccccceEeecCcccccccccccccCCccEEeecCChhhhhhhccCccCCcccccCCCCC
Q 039535 605 GLEELKIDYTEIAQKRREPFVFRSLRRVTMVSCHKLKDLTFLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSP 684 (769)
Q Consensus 605 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 684 (769)
.|++|++++|.++.++.....+..|+.|...+| .+..+|.+..++.|+++|++.| .+..+. +++.. .
T Consensus 408 ~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS~N-~L~~~~-------l~~~~----p 474 (1081)
T KOG0618|consen 408 ELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN-QLLSFPELAQLPQLKVLDLSCN-NLSEVT-------LPEAL----P 474 (1081)
T ss_pred HhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC-ceeechhhhhcCcceEEecccc-hhhhhh-------hhhhC----C
Confidence 566677777777766666666777777777777 4566667777777777777643 333331 11111 1
Q ss_pred CCcccccccccccc
Q 039535 685 FENLQNLDLSYLLA 698 (769)
Q Consensus 685 ~~~L~~L~l~~c~~ 698 (769)
-|+|++|||++++.
T Consensus 475 ~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNTR 488 (1081)
T ss_pred CcccceeeccCCcc
Confidence 15777777777654
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.43 E-value=7.9e-14 Score=159.55 Aligned_cols=328 Identities=21% Similarity=0.298 Sum_probs=204.1
Q ss_pred eEEEEcCCccccCCCCCCCcceeEEEEeecc--ccccCC--CCCCCCceEEEeecccchhcccCcccccCCcccEEEeec
Q 039535 362 NFLVCAGAGLKEAPDVKGWENVRRLSLMQNQ--IKVLSE--VPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISN 437 (769)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~--~~~~~~--~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~ 437 (769)
+.++.-......++.....++++.|-+..|. +..++. |..++.|++|++++|..+..+|.. ++++-+||+|++++
T Consensus 526 rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSD 604 (889)
T ss_pred eEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccC
Confidence 3344444455556555566689999999886 555554 788999999999999988999876 89999999999999
Q ss_pred cCccccccCCccccCCCCCCEEeccCCC-CCccchhhhcCCCCceeeccCCC-cccccchHHhcCCCcCcEEEeeccCCC
Q 039535 438 IGYFNVLKLPLGMSKLGSLELLDISHSS-IEELPEELKLLVNLKCLNLRWTD-VLNKIPRQLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 438 ~~~~~~~~l~~~~~~l~~L~~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~~~-~l~~lp~~~~~~l~~L~~L~l~~~~~~ 515 (769)
+ .+..+|..+.++.+|.+|++..+. +..+|.....+.+|++|.+.... ..+..-..-+.++.+|+.+.......
T Consensus 605 t---~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~- 680 (889)
T KOG4658|consen 605 T---GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV- 680 (889)
T ss_pred C---CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-
Confidence 9 899999999999999999999985 44556666679999999997764 11111111134455555555433222
Q ss_pred ccccccccccccCCccchhhhhhcCCCceEEEEEeC-ChhhHHHHHhcccccccceeEEEeccCCCccccc-cc--ccc-
Q 039535 516 RFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLG-SYHALQILLSSNKLKSCIRSLLLFGFRGTKYFID-AT--AFA- 590 (769)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~-~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~-~~--~l~- 590 (769)
.....+.....|..+..... ...............++++.|.+.+|...+.... .. ...
T Consensus 681 ----------------~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~ 744 (889)
T KOG4658|consen 681 ----------------LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLL 744 (889)
T ss_pred ----------------HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhh
Confidence 12233333333332211111 0012222233344456788888888877543221 01 111
Q ss_pred ccccccceeeccccCcceEeeeeeccccccCCCccccccceEeecCccccccccc-ccccCCccEEeecCChhhhhhhcc
Q 039535 591 DLKHLNELQIHDCRGLEELKIDYTEIAQKRREPFVFRSLRRVTMVSCHKLKDLTF-LVFAPNLKSISLGDCDALEEIISV 669 (769)
Q Consensus 591 ~~~~L~~L~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~ 669 (769)
.++++..+.+.+|..++ ++.+.. ..++|+.|++..|..++++.+ ...+..++.+.+..+ .++.....
T Consensus 745 ~f~~l~~~~~~~~~~~r--~l~~~~---------f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~-~~~~l~~~ 812 (889)
T KOG4658|consen 745 CFPNLSKVSILNCHMLR--DLTWLL---------FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN-KLEGLRML 812 (889)
T ss_pred hHHHHHHHHhhcccccc--ccchhh---------ccCcccEEEEecccccccCCCHHHHhhhcccEEeccc-ccccceee
Confidence 24577777788887777 444433 478999999999998888644 444555554333322 11111011
Q ss_pred CccCCcccccCCCCCCCcccccccccccccccccCCCCCCCCcceEeecCC-ccCCCcCCC
Q 039535 670 GKFAEVPEMMGHLSPFENLQNLDLSYLLALKSIYWKPLPFTYLKEMVVNGC-DQLKKLPLD 729 (769)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~C-~~L~~lp~~ 729 (769)
.+.++++.....--.+++|+.+.+..|++++. +|.+..+.+.+| +++..+|.+
T Consensus 813 ~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~-------~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 813 CSLGGLPQLYWLPLSFLKLEELIVEECPKLGK-------LPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred ecCCCCceeEecccCccchhheehhcCccccc-------CccccccceeccccceeecCCc
Confidence 12223333332223344466666666655544 467778889887 899999976
No 21
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.43 E-value=7.5e-11 Score=125.77 Aligned_cols=299 Identities=14% Similarity=0.141 Sum_probs=174.5
Q ss_pred CCCccccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCC---CCEEEEEEecCCCCHHHH
Q 039535 18 PTERTLVGLQSQLEQVWRCLIE----ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTN---FDFVIWVVVSKDPRLEKI 90 (769)
Q Consensus 18 ~~~~~~vgR~~~~~~l~~~l~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~---~~~~~w~~~~~~~~~~~~ 90 (769)
..|+.++||++++++|...+.. +..+.+.|+|++|+|||++++.+++.+.+.... .-.++|+++....+...+
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 3456899999999999999864 345678999999999999999999987332211 135778888877788889
Q ss_pred HHHHHHHcC---CCCCCCCCccHHHHHHHHHHHh--ccceEEEEEccccccc-c----ccccccc--CCCCCCCCcEEEE
Q 039535 91 QEDIGKRIG---LVDDSWKSKSVEEKALDIFRSL--REKRIVLLLDDIWERL-D----LTKVGVP--LPGPKNTTSKVVF 158 (769)
Q Consensus 91 ~~~l~~~l~---~~~~~~~~~~~~~~~~~l~~~l--~~~~~llvlDd~~~~~-~----~~~~~~~--l~~~~~~~~~iii 158 (769)
+..++.++. ...+. ......+....+.+.+ .++++++|||++|... . +..+... ..........+|.
T Consensus 92 ~~~i~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~ 170 (365)
T TIGR02928 92 LVELANQLRGSGEEVPT-TGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIG 170 (365)
T ss_pred HHHHHHHHhhcCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEE
Confidence 999999883 32221 2334556666666666 3568899999997652 1 1111111 0101112334455
Q ss_pred EcCchhhhccc-------CCCceEEeecCCHHHHHHHHHHHhccc--cCCCchhHHHHHHHHHHHhCCcchHHHHHHHHh
Q 039535 159 TTRFFDVCGSM-------EAHRTFEVACLSEKDAWELFQEKVGEE--TLKSDHDIAELAQTVAKKCGGLPLALVTIGRAM 229 (769)
Q Consensus 159 ttr~~~~~~~~-------~~~~~~~l~~l~~~e~~~l~~~~~~~~--~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 229 (769)
+++.......+ -....+.+++++.+|..+++..++... ....+++..+.+..++....|.+..+..+....
T Consensus 171 i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a 250 (365)
T TIGR02928 171 ISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVA 250 (365)
T ss_pred EECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 55443321111 012468999999999999999987421 112233333445556666678775443332211
Q ss_pred -----c-C--CCCHHHHHHHHHHHhcccCCCCCCccchhhHHHhhhcCCCccccchhhceecccC--CCccccHHHHHHH
Q 039535 230 -----A-S--KKTAEEWRHAIEELGRSASEFPGLGKEVYPVLKFSYDSLPNETIRSCFLYCCLYP--EDYGILKWDLIDC 299 (769)
Q Consensus 230 -----~-~--~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~l~~~~~~L~~~~~~~~~~~~~~~p--~~~~i~~~~l~~~ 299 (769)
. + .-+.+....+.+... .....-.+..|+. +.+..+..++..- ....+...++...
T Consensus 251 ~~~a~~~~~~~it~~~v~~a~~~~~-------------~~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~ 316 (365)
T TIGR02928 251 GEIAEREGAERVTEDHVEKAQEKIE-------------KDRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEV 316 (365)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHH-------------HHHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 1 1 124555555554432 1223345667776 5554444333211 2233444444442
Q ss_pred H--hhcCccccCcccccccchhhhHHHHhhhcceeee
Q 039535 300 W--IGEGFLEESNRFGAENRGYYIVGTLVHTCLLEEI 334 (769)
Q Consensus 300 w--~~~g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 334 (769)
+ +++.+- . .........+++..|...|+++..
T Consensus 317 y~~~~~~~~-~--~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 317 YKEVCEDIG-V--DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHHHhcC-C--CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 2 222211 1 123446667789999999999875
No 22
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.42 E-value=4.5e-13 Score=133.57 Aligned_cols=196 Identities=20% Similarity=0.207 Sum_probs=104.5
Q ss_pred ccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHH--------
Q 039535 23 LVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDI-------- 94 (769)
Q Consensus 23 ~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-------- 94 (769)
||||++++++|.+++.++..+.++|+|+.|+|||+|++++.+... .....++|+...... .......+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~---~~~~~~~y~~~~~~~-~~~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELK---EKGYKVVYIDFLEES-NESSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT-----EECCCHHCCTTBS-HHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhh---hcCCcEEEEecccch-hhhHHHHHHHHHHHHH
Confidence 799999999999999877678999999999999999999999872 211133444333322 22222222
Q ss_pred --HHHcCCCCCC--------CCCccHHHHHHHHHHHhc--cceEEEEEccccccc-cc-------ccccccCCC-CCCCC
Q 039535 95 --GKRIGLVDDS--------WKSKSVEEKALDIFRSLR--EKRIVLLLDDIWERL-DL-------TKVGVPLPG-PKNTT 153 (769)
Q Consensus 95 --~~~l~~~~~~--------~~~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~~-~~-------~~~~~~l~~-~~~~~ 153 (769)
...+....+. ............+.+.+. +++++||+||++... .. ..+...+.. .....
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC
Confidence 1112111110 012233444555555552 345999999997654 11 112222210 12233
Q ss_pred cEEEEEcCchhhhc--------ccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHH
Q 039535 154 SKVVFTTRFFDVCG--------SMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVT 224 (769)
Q Consensus 154 ~~iiittr~~~~~~--------~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 224 (769)
..+|++........ ..+....+.+++++.+++.+++...+... ... +..++..+.|+..+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 44445544433322 22334569999999999999999976544 122 22356678999999999998864
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=6.8e-15 Score=127.49 Aligned_cols=166 Identities=22% Similarity=0.386 Sum_probs=135.7
Q ss_pred ccccCCCCCCCcceeEEEEeecccccc-CCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCc
Q 039535 370 GLKEAPDVKGWENVRRLSLMQNQIKVL-SEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPL 448 (769)
Q Consensus 370 ~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~ 448 (769)
.+.+++....++.+.+|.+++|++... +.+..+.+|++|++++|+ ++++|.. ++.+++|+.|++..| .+.-+|.
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~-issl~klr~lnvgmn---rl~~lpr 96 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTS-ISSLPKLRILNVGMN---RLNILPR 96 (264)
T ss_pred cHhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChh-hhhchhhhheecchh---hhhcCcc
Confidence 445566667778888899999988544 567888999999999776 8888876 788999999999988 7777888
Q ss_pred cccCCCCCCEEeccCCCCC--ccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccc
Q 039535 449 GMSKLGSLELLDISHSSIE--ELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVL 526 (769)
Q Consensus 449 ~~~~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 526 (769)
.++.++-|+.|++..|++. .+|..+..++.|+.|+++.|. ..-+|++ ++++++|+.|.+..|...+
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll~---------- 164 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLLS---------- 164 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchhh----------
Confidence 9999999999999999887 688888888899999999886 6778887 8899999999988887664
Q ss_pred cCCccchhhhhhcCCCceEEEEEeCChhhHHH
Q 039535 527 FGGGEVLIQELLGLKYLEVLELTLGSYHALQI 558 (769)
Q Consensus 527 ~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~ 558 (769)
++..++.+..|++|.+.+++...++.
T Consensus 165 ------lpkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 165 ------LPKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred ------CcHHHHHHHHHHHHhcccceeeecCh
Confidence 67788888899998888776554443
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.40 E-value=1.4e-12 Score=147.03 Aligned_cols=115 Identities=21% Similarity=0.363 Sum_probs=58.3
Q ss_pred eEEEEeeccccccCC-CCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEecc
Q 039535 384 RRLSLMQNQIKVLSE-VPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDIS 462 (769)
Q Consensus 384 ~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~ 462 (769)
..|.+.++.+..++. + .++|+.|++++|. +..+|...+ ++|++|++++| .+..+|..+. .+|+.|+++
T Consensus 181 ~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~-LtsLP~~l~---~nL~~L~Ls~N---~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 181 TELRLKILGLTTIPACI--PEQITTLILDNNE-LKSLPENLQ---GNIKTLYANSN---QLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred eEEEeCCCCcCcCCccc--ccCCcEEEecCCC-CCcCChhhc---cCCCEEECCCC---ccccCChhhh--ccccEEECc
Confidence 344444444433332 2 1345566666554 445554322 35666666665 4444554332 356666666
Q ss_pred CCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCC
Q 039535 463 HSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 463 ~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 515 (769)
+|.++.+|..+. .+|+.|++++|. +..+|.. + ..+|+.|++++|.+.
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~-l--~~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNK-ISCLPEN-L--PEELRYLSVYDNSIR 296 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCc-cCccccc-c--CCCCcEEECCCCccc
Confidence 666666555443 356666666554 4455543 2 235666666665544
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.36 E-value=1.7e-12 Score=146.39 Aligned_cols=241 Identities=19% Similarity=0.233 Sum_probs=139.7
Q ss_pred EEEEcCCccccCCCCCCCcceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccc
Q 039535 363 FLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFN 442 (769)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~ 442 (769)
.+...+.++.++|... .+.++.|.+++|.+..++.. ...+|++|++++|. +..+|... ..+|+.|++++| .
T Consensus 182 ~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~-LtsLP~~l---~~~L~~L~Ls~N---~ 252 (754)
T PRK15370 182 ELRLKILGLTTIPACI-PEQITTLILDNNELKSLPEN-LQGNIKTLYANSNQ-LTSIPATL---PDTIQEMELSIN---R 252 (754)
T ss_pred EEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChh-hccCCCEEECCCCc-cccCChhh---hccccEEECcCC---c
Confidence 3444445555555421 24667777777766555431 12467777777665 55565432 235677777777 5
Q ss_pred cccCCccccCCCCCCEEeccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccc
Q 039535 443 VLKLPLGMSKLGSLELLDISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASE 522 (769)
Q Consensus 443 ~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 522 (769)
+..+|..+. .+|++|++++|+++.+|..+. .+|+.|++++|. +..+|.. + ..+|++|++++|.+..++
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-l--p~sL~~L~Ls~N~Lt~LP---- 320 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-L--PSGITHLNVQSNSLTALP---- 320 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-c--hhhHHHHHhcCCccccCC----
Confidence 556665543 467777777777776665443 467777777765 5555543 1 134555555555433110
Q ss_pred cccccCCccchhhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccccceeecc
Q 039535 523 DSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHD 602 (769)
Q Consensus 523 ~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 602 (769)
..+ .++|+.|++++
T Consensus 321 ----------------------------------------------------------------~~l--~~sL~~L~Ls~ 334 (754)
T PRK15370 321 ----------------------------------------------------------------ETL--PPGLKTLEAGE 334 (754)
T ss_pred ----------------------------------------------------------------ccc--cccceeccccC
Confidence 001 13455555544
Q ss_pred ccCcceEeeeeeccccccCCCccccccceEeecCcccccccccccccCCccEEeecCChhhhhhhccCccCCcccccCCC
Q 039535 603 CRGLEELKIDYTEIAQKRREPFVFRSLRRVTMVSCHKLKDLTFLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHL 682 (769)
Q Consensus 603 ~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~ 682 (769)
| .++.++.. -+++|+.|++++| +++.+|. ...++|+.|+|++|. ++ .+|..+.
T Consensus 335 N-----------~Lt~LP~~--l~~sL~~L~Ls~N-~L~~LP~-~lp~~L~~LdLs~N~-Lt---------~LP~~l~-- 387 (754)
T PRK15370 335 N-----------ALTSLPAS--LPPELQVLDVSKN-QITVLPE-TLPPTITTLDVSRNA-LT---------NLPENLP-- 387 (754)
T ss_pred C-----------ccccCChh--hcCcccEEECCCC-CCCcCCh-hhcCCcCEEECCCCc-CC---------CCCHhHH--
Confidence 3 22222221 1368999999999 4666653 224789999999874 22 3333321
Q ss_pred CCCCcccccccccccccccccCCC----CCCCCcceEeecCCc
Q 039535 683 SPFENLQNLDLSYLLALKSIYWKP----LPFTYLKEMVVNGCD 721 (769)
Q Consensus 683 ~~~~~L~~L~l~~c~~l~~~~~~~----~~~~~L~~L~i~~C~ 721 (769)
++|+.|++++| .+..+|... ..++++..|++.+.+
T Consensus 388 ---~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 388 ---AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred ---HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 36899999994 777777533 235788899998775
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.32 E-value=4.1e-10 Score=114.55 Aligned_cols=209 Identities=12% Similarity=0.115 Sum_probs=125.1
Q ss_pred ccccCCCCccccchHH---HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHH
Q 039535 13 VADERPTERTLVGLQS---QLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEK 89 (769)
Q Consensus 13 ~~~~~~~~~~~vgR~~---~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 89 (769)
|....|.+..|+.-.. .+..+...+. .+.+.++|+|++|+||||+++.+++.+. ..-..++|+ +....+..+
T Consensus 12 pF~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~l~G~~G~GKTtl~~~l~~~l~---~~~~~~~~~-~~~~~~~~~ 86 (269)
T TIGR03015 12 PFQLLPDPDFFYPSKGHKRAMAYLEYGLS-QREGFILITGEVGAGKTTLIRNLLKRLD---QERVVAAKL-VNTRVDAED 86 (269)
T ss_pred CCCCCCCHHHhCCCHHHHHHHHHHHHHHh-cCCCEEEEEcCCCCCHHHHHHHHHHhcC---CCCeEEeee-eCCCCCHHH
Confidence 3344455555555333 3333333332 4456899999999999999999999872 111122333 333456778
Q ss_pred HHHHHHHHcCCCCCCCCCccHHHHHHHHHHH----h-ccceEEEEEccccccc--cccccccc--CCCCCCCCcEEEEEc
Q 039535 90 IQEDIGKRIGLVDDSWKSKSVEEKALDIFRS----L-REKRIVLLLDDIWERL--DLTKVGVP--LPGPKNTTSKVVFTT 160 (769)
Q Consensus 90 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~----l-~~~~~llvlDd~~~~~--~~~~~~~~--l~~~~~~~~~iiitt 160 (769)
++..++..++.... ..........+.+. . .+++.++|+||++... .++.+... ..........|++|.
T Consensus 87 ~l~~i~~~lG~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g 163 (269)
T TIGR03015 87 LLRMVAADFGLETE---GRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVG 163 (269)
T ss_pred HHHHHHHHcCCCCC---CCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcC
Confidence 89999988876542 22223333333322 2 6678999999997642 23332211 111122233455655
Q ss_pred Cchhh--hcc-----c--CCCceEEeecCCHHHHHHHHHHHhccccCC-CchhHHHHHHHHHHHhCCcchHHHHHHHHh
Q 039535 161 RFFDV--CGS-----M--EAHRTFEVACLSEKDAWELFQEKVGEETLK-SDHDIAELAQTVAKKCGGLPLALVTIGRAM 229 (769)
Q Consensus 161 r~~~~--~~~-----~--~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 229 (769)
...-. ... + .....+.+++++.+|..+++...+...... ......+..+.|++.++|.|..|..++..+
T Consensus 164 ~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 164 QPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 54211 110 0 113467899999999999998887543211 112345788999999999999999988766
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.30 E-value=4.4e-14 Score=139.98 Aligned_cols=308 Identities=15% Similarity=0.119 Sum_probs=174.3
Q ss_pred CceEEEeecccchhccc-CcccccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCC-CCC--ccchhhhcCCCC
Q 039535 404 HLLTLFLDFNRELMMIA-GGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHS-SIE--ELPEELKLLVNL 479 (769)
Q Consensus 404 ~L~~L~l~~~~~~~~i~-~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~-~i~--~lp~~~~~l~~L 479 (769)
.|+.|.+.++.....-+ ..+-..|+++..|.+.+|.......+-+.-..|.+|++|++..| .|+ .+......+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 34555555554332222 11234455555555555531111111122234555666666554 444 121123455666
Q ss_pred ceeeccCCCcccc--cchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCChhhHH
Q 039535 480 KCLNLRWTDVLNK--IPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQ 557 (769)
Q Consensus 480 ~~L~l~~~~~l~~--lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~ 557 (769)
.++++++|..+.. +-. +..++..++.+...||.-... ..+...-..+..+..+++..+..-+.+
T Consensus 219 ~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~~~kGC~e~~l-------------e~l~~~~~~~~~i~~lnl~~c~~lTD~ 284 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQA-LQRGCKELEKLSLKGCLELEL-------------EALLKAAAYCLEILKLNLQHCNQLTDE 284 (483)
T ss_pred HHhhhccCchhhcCcchH-HhccchhhhhhhhcccccccH-------------HHHHHHhccChHhhccchhhhccccch
Confidence 6666666654432 111 144555555555555543321 111111123333444443333322333
Q ss_pred HHHhcccccccceeEEEeccCCCccccccccccccccccceeeccccCcceEeeeeeccccccCCCccccccceEeecCc
Q 039535 558 ILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGLEELKIDYTEIAQKRREPFVFRSLRRVTMVSC 637 (769)
Q Consensus 558 ~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~ 637 (769)
.+......+..++.|+.++|........-..-.++.+|++|.+++|..++....... ..+.+.|+.+++..|
T Consensus 285 ~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l--------~rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 285 DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML--------GRNCPHLERLDLEEC 356 (483)
T ss_pred HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh--------hcCChhhhhhccccc
Confidence 344444455677888888888877776656667789999999999988763332222 246789999999999
Q ss_pred ccccccc---cccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCcccccccccccccccccCC-CCCCCCcc
Q 039535 638 HKLKDLT---FLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALKSIYWK-PLPFTYLK 713 (769)
Q Consensus 638 ~~l~~l~---~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~ 713 (769)
....+-+ .-..++.|++|.|++|..+++. ++-..-..-.+...|+.+.|++|+.+.+-... ...+++|+
T Consensus 357 ~~~~d~tL~sls~~C~~lr~lslshce~itD~-------gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Le 429 (483)
T KOG4341|consen 357 GLITDGTLASLSRNCPRLRVLSLSHCELITDE-------GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLE 429 (483)
T ss_pred ceehhhhHhhhccCCchhccCChhhhhhhhhh-------hhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccc
Confidence 7666642 2336899999999999888874 11111122334557899999999888765433 33588999
Q ss_pred eEeecCCccCCCcCCCCCcccccceEE
Q 039535 714 EMVVNGCDQLKKLPLDSSCAEERKFVI 740 (769)
Q Consensus 714 ~L~i~~C~~L~~lp~~~~~~~l~~~~i 740 (769)
++++.+|...++-+.....+++-.++|
T Consensus 430 ri~l~~~q~vtk~~i~~~~~~lp~i~v 456 (483)
T KOG4341|consen 430 RIELIDCQDVTKEAISRFATHLPNIKV 456 (483)
T ss_pred eeeeechhhhhhhhhHHHHhhCcccee
Confidence 999999988887776554444333333
No 28
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.28 E-value=9.1e-11 Score=116.96 Aligned_cols=255 Identities=17% Similarity=0.110 Sum_probs=143.3
Q ss_pred CCccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHc
Q 039535 19 TERTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRI 98 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l 98 (769)
-.++++|....+.++++ .+....+.+|||||+||||||+.++... ...| ..++...+-.
T Consensus 28 GQ~HLlg~~~~lrr~v~---~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f-----~~~sAv~~gv---------- 86 (436)
T COG2256 28 GQEHLLGEGKPLRRAVE---AGHLHSMILWGPPGTGKTTLARLIAGTT---NAAF-----EALSAVTSGV---------- 86 (436)
T ss_pred ChHhhhCCCchHHHHHh---cCCCceeEEECCCCCCHHHHHHHHHHhh---CCce-----EEeccccccH----------
Confidence 34555556666666655 3778888999999999999999999987 3332 2222221111
Q ss_pred CCCCCCCCCccHHHHHHHH-HHHhccceEEEEEccccc--ccccccccccCCCCCCCCcEEEE--EcCchhh---hcccC
Q 039535 99 GLVDDSWKSKSVEEKALDI-FRSLREKRIVLLLDDIWE--RLDLTKVGVPLPGPKNTTSKVVF--TTRFFDV---CGSME 170 (769)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l-~~~l~~~~~llvlDd~~~--~~~~~~~~~~l~~~~~~~~~iii--ttr~~~~---~~~~~ 170 (769)
.++.+.++.- .....+++.++++|++.. ..+-+.+..++. .|..++| ||.++.+ .+...
T Consensus 87 ---------kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE----~G~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 87 ---------KDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE----NGTIILIGATTENPSFELNPALLS 153 (436)
T ss_pred ---------HHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc----CCeEEEEeccCCCCCeeecHHHhh
Confidence 1222222222 222357899999999953 344455544443 4555554 6666654 22234
Q ss_pred CCceEEeecCCHHHHHHHHHHHhcccc--CC--CchhHHHHHHHHHHHhCCcchHHHHHHHHhcC---CC---CHHHHHH
Q 039535 171 AHRTFEVACLSEKDAWELFQEKVGEET--LK--SDHDIAELAQTVAKKCGGLPLALVTIGRAMAS---KK---TAEEWRH 240 (769)
Q Consensus 171 ~~~~~~l~~l~~~e~~~l~~~~~~~~~--~~--~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~---~~---~~~~~~~ 240 (769)
...++.+.+|+.++..+++.+.+.... .. .....++....++..++|--.++-....+... .. +.+..+.
T Consensus 154 R~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~ 233 (436)
T COG2256 154 RARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEE 233 (436)
T ss_pred hhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHH
Confidence 567899999999999999999442211 11 11112456778888898866544333333221 11 3455555
Q ss_pred HHHHHhcccCCCCCCccchhhHHHhhhcCCCccccchhhceecccCCCccccHHHHHH-HHhhcCccc
Q 039535 241 AIEELGRSASEFPGLGKEVYPVLKFSYDSLPNETIRSCFLYCCLYPEDYGILKWDLID-CWIGEGFLE 307 (769)
Q Consensus 241 ~l~~l~~~~~~~~~~~~~i~~~l~~~~~~L~~~~~~~~~~~~~~~p~~~~i~~~~l~~-~w~~~g~~~ 307 (769)
.+++-.....+....+-++.+++..|+..-+++.+-..+..+---.++..+-.+++++ -|-+-|..+
T Consensus 234 ~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGlAd 301 (436)
T COG2256 234 ILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGLAD 301 (436)
T ss_pred HHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCC
Confidence 5554333333333333478888999998888754333333222223333443333333 333334433
No 29
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.27 E-value=2.9e-13 Score=134.22 Aligned_cols=288 Identities=16% Similarity=0.122 Sum_probs=211.1
Q ss_pred CcccEEEeeccCccccccCCccccCCCCCCEEeccCC-CCC--ccchhhhcCCCCceeeccCCCcccccchH-HhcCCCc
Q 039535 428 PSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHS-SIE--ELPEELKLLVNLKCLNLRWTDVLNKIPRQ-LISNLSR 503 (769)
Q Consensus 428 ~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~-~i~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~~l~~ 503 (769)
..|+.|.+.+|...+...+-....+++++++|.+.+| +|+ .+-..-..+++|+++++..|..++..... +...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 5688999999975555555556678999999999999 666 23333467899999999999877765443 4568999
Q ss_pred CcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccc
Q 039535 504 VRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYF 583 (769)
Q Consensus 504 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~ 583 (769)
|++++++.|...+ +.-+-....++..++.+...++.-..++.+........-+.++++..|...++.
T Consensus 218 L~~lNlSwc~qi~-------------~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~ 284 (483)
T KOG4341|consen 218 LKYLNLSWCPQIS-------------GNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE 284 (483)
T ss_pred HHHhhhccCchhh-------------cCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch
Confidence 9999999998653 222334446677777777676666666666666565566777777788888877
Q ss_pred cccccccccccccceeeccccCcceEeeeeeccccccCCCccccccceEeecCcccccccc--ccc-ccCCccEEeecCC
Q 039535 584 IDATAFADLKHLNELQIHDCRGLEELKIDYTEIAQKRREPFVFRSLRRVTMVSCHKLKDLT--FLV-FAPNLKSISLGDC 660 (769)
Q Consensus 584 ~~~~~l~~~~~L~~L~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~--~l~-~l~~L~~L~l~~~ 660 (769)
.....-..+..|++|..++|..+....+... ....++|+.|-+..|..+++.- .++ +++.|+.+++..|
T Consensus 285 ~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL--------g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 285 DLWLIACGCHALQVLCYSSCTDITDEVLWAL--------GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC 356 (483)
T ss_pred HHHHHhhhhhHhhhhcccCCCCCchHHHHHH--------hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence 6555666788999999999887664332222 2457999999999999888743 343 5799999999999
Q ss_pred hhhhhhhccCccCCcccccCCCCCCCcccccccccccccccc-----cCCCCCCCCcceEeecCCccCCCcCCCC--Ccc
Q 039535 661 DALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALKSI-----YWKPLPFTYLKEMVVNGCDQLKKLPLDS--SCA 733 (769)
Q Consensus 661 ~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-----~~~~~~~~~L~~L~i~~C~~L~~lp~~~--~~~ 733 (769)
..+.+. ...+--.++|.|+.|.+++|..+++. ......+..|+.+.+.+||.+++--... .++
T Consensus 357 ~~~~d~----------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~ 426 (483)
T KOG4341|consen 357 GLITDG----------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR 426 (483)
T ss_pred ceehhh----------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence 877653 11112346789999999999888766 2333457889999999999999855444 448
Q ss_pred cccceEEeccccc
Q 039535 734 EERKFVIRGEAHW 746 (769)
Q Consensus 734 ~l~~~~i~~~~~~ 746 (769)
+|+.+++.+|+..
T Consensus 427 ~Leri~l~~~q~v 439 (483)
T KOG4341|consen 427 NLERIELIDCQDV 439 (483)
T ss_pred ccceeeeechhhh
Confidence 8998888887765
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.26 E-value=3.1e-13 Score=132.87 Aligned_cols=149 Identities=25% Similarity=0.310 Sum_probs=115.1
Q ss_pred ceEEEEcCCccccCCCCCCCcceeEEEEeeccccccC--CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeecc
Q 039535 361 INFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLS--EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNI 438 (769)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~ 438 (769)
...+.|.+.++.++|. .-++....+.|..|.|..++ +|+.+++||+|+|++|. |+.|.+.+|+.++.|-.|-+.++
T Consensus 48 g~~VdCr~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 48 GGIVDCRGKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred CceEEccCCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcC
Confidence 3567888889999986 33357778888888887775 47888889999998887 88888888888888877777663
Q ss_pred CccccccCCc-cccCCCCCCEEeccCCCCCccc-hhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCC
Q 039535 439 GYFNVLKLPL-GMSKLGSLELLDISHSSIEELP-EELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGY 514 (769)
Q Consensus 439 ~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~ 514 (769)
+ .++.+|. .++++..|+-|.+.-|++..++ ..+..+++|..|.+..|. +..++...+..+..++++++..|..
T Consensus 126 N--kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 126 N--KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred C--chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCcc
Confidence 2 7778875 4578888888888888888554 447788888888888885 6677775677888888888877663
No 31
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.23 E-value=1.4e-10 Score=120.11 Aligned_cols=190 Identities=18% Similarity=0.173 Sum_probs=108.3
Q ss_pred ccccchHHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHH
Q 039535 21 RTLVGLQSQLEQVWRCLIE-----ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIG 95 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 95 (769)
.+||||+.+++++..++.. +....++|+||+|+|||+||+.++++. ...+ ..+.......... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCE---EEeccchhcCchh-HHHHH
Confidence 5699999999999988863 334578899999999999999999987 2211 1121111111111 22222
Q ss_pred HHcCCCC----CCCCCccHHHHHHHHHHHhccceEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhhhccc--
Q 039535 96 KRIGLVD----DSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERLDLTKVGVPLPGPKNTTSKVVFTTRFFDVCGSM-- 169 (769)
Q Consensus 96 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~~~~~~~~l~~~~~~~~~iiittr~~~~~~~~-- 169 (769)
..++... ++..... ......+...+.+.+..+|+|+..+...+. ..++ +.+.|..|++...+...+
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~---~~~~----~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVR---LDLP----PFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCcccccee---ecCC----CeEEEEecCCccccCHHHHh
Confidence 2222111 0000000 111223344444444555555543322222 1122 245556666654332211
Q ss_pred CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHH
Q 039535 170 EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRA 228 (769)
Q Consensus 170 ~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 228 (769)
.....+.+++++.++..+++.+.+.......+ .+.+..|++.++|.|..+..++..
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~~ 204 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLRR 204 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHHH
Confidence 11346899999999999999998875443333 456778999999999876655543
No 32
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.22 E-value=3.1e-13 Score=117.31 Aligned_cols=135 Identities=21% Similarity=0.392 Sum_probs=114.8
Q ss_pred cCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCccchhhhc
Q 039535 396 LSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEELPEELKL 475 (769)
Q Consensus 396 ~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~ 475 (769)
++.+-.+.+++.|.+|+|. +..+|+. +..+.+|++|++++| .+..+|..++.+++|+.|++.-|++..+|..+++
T Consensus 26 ~~gLf~~s~ITrLtLSHNK-l~~vppn-ia~l~nlevln~~nn---qie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNK-LTVVPPN-IAELKNLEVLNLSNN---QIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred cccccchhhhhhhhcccCc-eeecCCc-HHHhhhhhhhhcccc---hhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 4445667888999999998 8888887 888999999999999 8999999999999999999999999999999999
Q ss_pred CCCCceeeccCCCcccc-cchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCC
Q 039535 476 LVNLKCLNLRWTDVLNK-IPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGS 552 (769)
Q Consensus 476 l~~L~~L~l~~~~~l~~-lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~ 552 (769)
++-|++||+.+|..... +|.. |-.+..|+-|.++.|.+. .++..++++++|+.|.+-.++
T Consensus 101 ~p~levldltynnl~e~~lpgn-ff~m~tlralyl~dndfe----------------~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDNDFE----------------ILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred CchhhhhhccccccccccCCcc-hhHHHHHHHHHhcCCCcc----------------cCChhhhhhcceeEEeeccCc
Confidence 99999999999985554 5554 667889999999888754 467888999988888766443
No 33
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.18 E-value=2.4e-10 Score=119.02 Aligned_cols=193 Identities=17% Similarity=0.123 Sum_probs=108.7
Q ss_pred CCCccccchHHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHH
Q 039535 18 PTERTLVGLQSQLEQVWRCLIE-----ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQE 92 (769)
Q Consensus 18 ~~~~~~vgR~~~~~~l~~~l~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 92 (769)
..-.+||||+..++.+..++.. ...+.+.|+||+|+|||++|+.+++.. ... ..++.... ......+.
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~---~~~~~~~~-~~~~~~l~ 94 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM---GVN---IRITSGPA-LEKPGDLA 94 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh---CCC---eEEEeccc-ccChHHHH
Confidence 3447899999999999887752 234678999999999999999999998 221 11222111 11112223
Q ss_pred HHHHHcCCCC----CCCCCccHHHHHHHHHHHhccceEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhhhcc
Q 039535 93 DIGKRIGLVD----DSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERLDLTKVGVPLPGPKNTTSKVVFTTRFFDVCGS 168 (769)
Q Consensus 93 ~l~~~l~~~~----~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~~~~~~~~l~~~~~~~~~iiittr~~~~~~~ 168 (769)
.++..+.... ++..... ....+.+...+.+.+..+++|+..+.... ...++ +.+.|..|++...+...
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~---~~~l~----~~~li~at~~~~~l~~~ 166 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSI---RLDLP----PFTLIGATTRAGLLTSP 166 (328)
T ss_pred HHHHhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCccccce---eecCC----CceEEeecCCcccCCHH
Confidence 3333322110 0000000 01111223333344444444443222111 11122 23455566664333221
Q ss_pred c--CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHH
Q 039535 169 M--EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRA 228 (769)
Q Consensus 169 ~--~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 228 (769)
+ .-...+++++++.++..+++.+.+.......+ .+.+..|++.|+|.|..+..+...
T Consensus 167 L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~ 225 (328)
T PRK00080 167 LRDRFGIVQRLEFYTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRR 225 (328)
T ss_pred HHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHH
Confidence 1 11346899999999999999998876553333 356889999999999766666544
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.16 E-value=1.2e-11 Score=129.62 Aligned_cols=114 Identities=23% Similarity=0.190 Sum_probs=54.1
Q ss_pred CCCCCceEEEeecccch----hcccCcccccCCcccEEEeeccCccc----cccCCccccCCCCCCEEeccCCCCC-ccc
Q 039535 400 PTCPHLLTLFLDFNREL----MMIAGGYFQFMPSLKVLKISNIGYFN----VLKLPLGMSKLGSLELLDISHSSIE-ELP 470 (769)
Q Consensus 400 ~~~~~L~~L~l~~~~~~----~~i~~~~~~~l~~L~~L~l~~~~~~~----~~~l~~~~~~l~~L~~L~l~~~~i~-~lp 470 (769)
..+..|+.|.+++|... ..++. .+...++|+.++++++.... +..++..+..+++|++|++++|.+. ..+
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~-~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALAS-ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHH-HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 34455666666665521 11222 24455666666666652110 0112233445566666666666554 233
Q ss_pred hhhhcCCC---CceeeccCCCccc----ccchHHhcCC-CcCcEEEeeccCCC
Q 039535 471 EELKLLVN---LKCLNLRWTDVLN----KIPRQLISNL-SRVRVLRMFATGYD 515 (769)
Q Consensus 471 ~~~~~l~~---L~~L~l~~~~~l~----~lp~~~~~~l-~~L~~L~l~~~~~~ 515 (769)
..+..+.+ |++|++++|.... .+... +..+ ++|++|++++|.+.
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCCCcCC
Confidence 33333333 6666666665221 11111 3344 56666666666554
No 35
>PF05729 NACHT: NACHT domain
Probab=99.14 E-value=2.9e-10 Score=106.46 Aligned_cols=144 Identities=18% Similarity=0.252 Sum_probs=91.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhccCC---CCEEEEEEecCCCCH---HHHHHHHHHHcCCCCCCCCCccHHHHHHH
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKFLESRTN---FDFVIWVVVSKDPRL---EKIQEDIGKRIGLVDDSWKSKSVEEKALD 116 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~---~~~~~w~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 116 (769)
|+++|+|++|+||||++++++.++.+.... +..++|+........ ..+...+..+..... ..... .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~---~ 72 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE---L 72 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---H
Confidence 578999999999999999999998443322 345667666553322 234444444432211 11111 1
Q ss_pred HHHH-hccceEEEEEccccccccc---------cc-ccccCCCCCCCCcEEEEEcCchhh---hcccCCCceEEeecCCH
Q 039535 117 IFRS-LREKRIVLLLDDIWERLDL---------TK-VGVPLPGPKNTTSKVVFTTRFFDV---CGSMEAHRTFEVACLSE 182 (769)
Q Consensus 117 l~~~-l~~~~~llvlDd~~~~~~~---------~~-~~~~l~~~~~~~~~iiittr~~~~---~~~~~~~~~~~l~~l~~ 182 (769)
+... ...+++++|+|++|+.... .. +...++.....+.++++|+|+... .........+++.+|++
T Consensus 73 ~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 73 LQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE 152 (166)
T ss_pred HHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence 1112 2567999999999865431 11 222333223468899999998655 33344556899999999
Q ss_pred HHHHHHHHHHhc
Q 039535 183 KDAWELFQEKVG 194 (769)
Q Consensus 183 ~e~~~l~~~~~~ 194 (769)
++..+++.+.+.
T Consensus 153 ~~~~~~~~~~f~ 164 (166)
T PF05729_consen 153 EDIKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHHHhh
Confidence 999999988763
No 36
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.13 E-value=1.5e-09 Score=118.96 Aligned_cols=209 Identities=15% Similarity=0.100 Sum_probs=128.7
Q ss_pred CCCccccchHHHHHHHHHHhhc----CC-ceEEEEEcCCCCcHHHHHHHHHhhhhhcc--CC-C-CEEEEEEecCCCCHH
Q 039535 18 PTERTLVGLQSQLEQVWRCLIE----ES-AGIIGLYGMGGVGKTTLLIHINNKFLESR--TN-F-DFVIWVVVSKDPRLE 88 (769)
Q Consensus 18 ~~~~~~vgR~~~~~~l~~~l~~----~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~-~-~~~~w~~~~~~~~~~ 88 (769)
..|+.++||++++++|...|.. .+ ..++.|+|++|+|||++++.+++++++.. .. . -.++++++....+..
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 3457899999999999998864 22 34678999999999999999998884322 11 1 357788888888899
Q ss_pred HHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc---cceEEEEEcccccccc-----cccccccCCCCCCCCcEEEEEc
Q 039535 89 KIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLR---EKRIVLLLDDIWERLD-----LTKVGVPLPGPKNTTSKVVFTT 160 (769)
Q Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~~~~llvlDd~~~~~~-----~~~~~~~l~~~~~~~~~iiitt 160 (769)
.+++.+..++....+. ......+.+..++..+. ....+||||+++.... +-.+... +...+....||.++
T Consensus 832 sIYqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-PTKINSKLVLIAIS 909 (1164)
T ss_pred HHHHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-hhccCCeEEEEEec
Confidence 9999999988544432 33344556666666652 2345999999974321 1111111 11111222233344
Q ss_pred Cchh--------hhcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchh-HHHHHHHHHHHhCCcchHHHHHHHHh
Q 039535 161 RFFD--------VCGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHD-IAELAQTVAKKCGGLPLALVTIGRAM 229 (769)
Q Consensus 161 r~~~--------~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~-~~~~~~~i~~~~~G~Plai~~~~~~l 229 (769)
.... +.+.+. ...+.+.+++.+|..+++..++.......++. .+-+|+.++...|..-.|+..+-...
T Consensus 910 NdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 910 NTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred Cchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 3322 122222 23477899999999999999986432122232 23334444444556666666554443
No 37
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.11 E-value=2.8e-12 Score=126.22 Aligned_cols=111 Identities=24% Similarity=0.358 Sum_probs=96.5
Q ss_pred CCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccC-CccccCCCCCCEEeccC-CCCCccchh-hhcCCCC
Q 039535 403 PHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKL-PLGMSKLGSLELLDISH-SSIEELPEE-LKLLVNL 479 (769)
Q Consensus 403 ~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l-~~~~~~l~~L~~L~l~~-~~i~~lp~~-~~~l~~L 479 (769)
+.-..+.|..|. |..+|+++|+.+++||.|+|+.| ++..+ |..+.++.+|..|-+.+ |+|+.+|.. +..+..|
T Consensus 67 ~~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N---~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 67 PETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKN---NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred CcceEEEeccCC-cccCChhhccchhhhceeccccc---chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 345678899887 99999999999999999999999 77766 67788899988888877 799999976 7899999
Q ss_pred ceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccc
Q 039535 480 KCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFH 518 (769)
Q Consensus 480 ~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~ 518 (769)
+.|.+..|+ +.-++.++++.+++|..|.+..|.+..+.
T Consensus 143 qrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~ 180 (498)
T KOG4237|consen 143 QRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQSIC 180 (498)
T ss_pred HHHhcChhh-hcchhHHHHHHhhhcchhcccchhhhhhc
Confidence 999999887 77788888999999999999998877554
No 38
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.09 E-value=4.2e-10 Score=129.90 Aligned_cols=310 Identities=17% Similarity=0.192 Sum_probs=179.1
Q ss_pred cccchHHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHH---HHHH
Q 039535 22 TLVGLQSQLEQVWRCLIE---ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQ---EDIG 95 (769)
Q Consensus 22 ~~vgR~~~~~~l~~~l~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~---~~l~ 95 (769)
.++||+.+++.|.+.+.+ +...++.|.|.+|||||+++..+.+...+.+..|-...+-+.........+. +.+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 379999999999999975 5667999999999999999999999984443333333333333333333333 3333
Q ss_pred HHc-------------------CCCC--------------------CCCCCccHHHHHH-----HHHHHh-ccceEEEEE
Q 039535 96 KRI-------------------GLVD--------------------DSWKSKSVEEKAL-----DIFRSL-REKRIVLLL 130 (769)
Q Consensus 96 ~~l-------------------~~~~--------------------~~~~~~~~~~~~~-----~l~~~l-~~~~~llvl 130 (769)
.++ +..+ .+..+...+.... .+.... +.++.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 322 1111 0011112222222 122222 556999999
Q ss_pred cccc-ccc-cccc---ccccCC--CCCCCCcEEEEEcCch--hhhcccCCCceEEeecCCHHHHHHHHHHHhccccCCCc
Q 039535 131 DDIW-ERL-DLTK---VGVPLP--GPKNTTSKVVFTTRFF--DVCGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSD 201 (769)
Q Consensus 131 Dd~~-~~~-~~~~---~~~~l~--~~~~~~~~iiittr~~--~~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~ 201 (769)
||++ -+. .+.- +....+ .........+.+.+.. .+.........+.+.||+..+...++....+......
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~~- 239 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLLP- 239 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccccc-
Confidence 9994 222 2221 111111 0111122233333332 2222234457899999999999999999998743122
Q ss_pred hhHHHHHHHHHHHhCCcchHHHHHHHHhcCC------CCHHHHHHHHHHHhcccCCCCCCccchhhHHHhhhcCCCcccc
Q 039535 202 HDIAELAQTVAKKCGGLPLALVTIGRAMASK------KTAEEWRHAIEELGRSASEFPGLGKEVYPVLKFSYDSLPNETI 275 (769)
Q Consensus 202 ~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~------~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~l~~~~~~L~~~~~ 275 (769)
.+....|++++.|+|+.+..+.+.+... .+...|......+.. ....+ .+...+...++.||. ..
T Consensus 240 ---~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~----~~~~~-~vv~~l~~rl~kL~~-~t 310 (849)
T COG3899 240 ---APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI----LATTD-AVVEFLAARLQKLPG-TT 310 (849)
T ss_pred ---chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC----chhhH-HHHHHHHHHHhcCCH-HH
Confidence 3567889999999999999999888763 344555554333222 22222 355568888999998 78
Q ss_pred chhhceecccCCCccccHHHHHHHHhhcCccccCcccccccchhhhHHHHhhhcceeee-------cCCeE---EEehhH
Q 039535 276 RSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEESNRFGAENRGYYIVGTLVHTCLLEEI-------EDDKV---KMHDVV 345 (769)
Q Consensus 276 ~~~~~~~~~~p~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~-------~~~~~---~~h~lv 345 (769)
+..+...+++... |+.+.+...|-. .....+....+.|.+..++... ..... ..|+.+
T Consensus 311 ~~Vl~~AA~iG~~--F~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~v 378 (849)
T COG3899 311 REVLKAAACIGNR--FDLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRV 378 (849)
T ss_pred HHHHHHHHHhCcc--CCHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHH
Confidence 8888888888644 444444433311 2223334445555555544321 11122 568888
Q ss_pred HHHHHHHH
Q 039535 346 RDMALWIA 353 (769)
Q Consensus 346 ~~~~~~~~ 353 (769)
++.+....
T Consensus 379 qqaaY~~i 386 (849)
T COG3899 379 QQAAYNLI 386 (849)
T ss_pred HHHHhccC
Confidence 88876443
No 39
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2e-08 Score=104.32 Aligned_cols=203 Identities=18% Similarity=0.241 Sum_probs=134.0
Q ss_pred CCccccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHH
Q 039535 19 TERTLVGLQSQLEQVWRCLIE----ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDI 94 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 94 (769)
.|+.+.+|+.+++++...|.. +....+.|+|++|+|||+.++.+++++........ ++++++....+...++..+
T Consensus 15 iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 15 IPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKI 93 (366)
T ss_pred CcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHH
Confidence 445699999999999998864 34445999999999999999999999943333322 8999999999999999999
Q ss_pred HHHcCCCCCCCCCccHHHHHHHHHHHhc--cceEEEEEccccccccc--ccccccCCCCCCCCcE--EEEEcCchh----
Q 039535 95 GKRIGLVDDSWKSKSVEEKALDIFRSLR--EKRIVLLLDDIWERLDL--TKVGVPLPGPKNTTSK--VVFTTRFFD---- 164 (769)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~~~~--~~~~~~l~~~~~~~~~--iiittr~~~---- 164 (769)
+..++... .......+..+.+.+.+. ++.+++|||+++....- +.+...+.......++ +|..+.+..
T Consensus 94 ~~~~~~~p--~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 94 LNKLGKVP--LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred HHHcCCCC--CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHH
Confidence 99997322 255667777778887774 47899999999754322 1221111101111233 333444332
Q ss_pred ----hhcccCCCceEEeecCCHHHHHHHHHHHhcccc--CCCchhHHHHHHHHHHHhC-CcchHHHHH
Q 039535 165 ----VCGSMEAHRTFEVACLSEKDAWELFQEKVGEET--LKSDHDIAELAQTVAKKCG-GLPLALVTI 225 (769)
Q Consensus 165 ----~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~~~-G~Plai~~~ 225 (769)
+.+.++..+ +.+++++.+|..+++..++.... ...+...-+++..++...+ ..-.|+..+
T Consensus 172 ld~rv~s~l~~~~-I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 172 LDPRVKSSLGPSE-IVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhhhccCcce-eeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 233334444 89999999999999999875321 1233333444444444444 444444444
No 40
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=2.7e-10 Score=104.53 Aligned_cols=132 Identities=27% Similarity=0.337 Sum_probs=43.3
Q ss_pred CCCCCCCcceeEEEEeeccccccCCCC-CCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccc-c
Q 039535 374 APDVKGWENVRRLSLMQNQIKVLSEVP-TCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGM-S 451 (769)
Q Consensus 374 ~~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~-~ 451 (769)
++......+++.|+|.++.|..+..+. .+.+|++|++++|. +..++. +..+++|+.|++++| .+..++..+ .
T Consensus 12 ~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~-I~~l~~--l~~L~~L~~L~L~~N---~I~~i~~~l~~ 85 (175)
T PF14580_consen 12 IAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQ-ITKLEG--LPGLPRLKTLDLSNN---RISSISEGLDK 85 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS---S--TT------TT--EEE--SS------S-CHHHHH
T ss_pred ccccccccccccccccccccccccchhhhhcCCCEEECCCCC-CccccC--ccChhhhhhcccCCC---CCCccccchHH
Confidence 344444456777777777777776665 46777777777776 666654 666777777777777 555554444 3
Q ss_pred CCCCCCEEeccCCCCCccc--hhhhcCCCCceeeccCCCccc--ccchHHhcCCCcCcEEEeec
Q 039535 452 KLGSLELLDISHSSIEELP--EELKLLVNLKCLNLRWTDVLN--KIPRQLISNLSRVRVLRMFA 511 (769)
Q Consensus 452 ~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~l~--~lp~~~~~~l~~L~~L~l~~ 511 (769)
.+++|+.|++++|+|..+. ..+..+++|+.|++.+|+... .....++..+++|+.||-..
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 5677777777777776432 345667777777777776332 12234455677777776543
No 41
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.01 E-value=5.9e-09 Score=111.95 Aligned_cols=194 Identities=18% Similarity=0.147 Sum_probs=113.4
Q ss_pred CccccchHHHHHH---HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHH
Q 039535 20 ERTLVGLQSQLEQ---VWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGK 96 (769)
Q Consensus 20 ~~~~vgR~~~~~~---l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 96 (769)
-++|||++..+.. +..++.++....+.|+|++|+||||+|+.+++.. ... |+.++.........+.+
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~-----~~~l~a~~~~~~~ir~i-- 80 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAP-----FEALSAVTSGVKDLREV-- 80 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----EEEEecccccHHHHHHH--
Confidence 3678999988777 7777776777788999999999999999999886 222 22222211111111111
Q ss_pred HcCCCCCCCCCccHHHHHHHHHHH-hccceEEEEEccccccc--ccccccccCCCCCCCCcEEEE--EcCchhh---hcc
Q 039535 97 RIGLVDDSWKSKSVEEKALDIFRS-LREKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVF--TTRFFDV---CGS 168 (769)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iii--ttr~~~~---~~~ 168 (769)
++..... ..+++.++++|+++... ..+.+...+. .+..+++ ||.+... .+.
T Consensus 81 -----------------i~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le----~~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 81 -----------------IEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE----DGTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred -----------------HHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh----cCcEEEEEeCCCChhhhccHHH
Confidence 1111111 14577899999997532 2333333332 1333333 3343321 111
Q ss_pred cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHhc---CCCCHHHHHHHHHH
Q 039535 169 MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAMA---SKKTAEEWRHAIEE 244 (769)
Q Consensus 169 ~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~---~~~~~~~~~~~l~~ 244 (769)
......+.+.+++.++..+++.+.+...........++..+.+++.++|.+..+..+..... ..-+.+.....++.
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~ 218 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALGVDSITLELLEEALQK 218 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCHHHHHHHHhh
Confidence 22346799999999999999988764321000022346677899999999976655544331 11245555555544
No 42
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.00 E-value=5.1e-09 Score=97.85 Aligned_cols=176 Identities=17% Similarity=0.211 Sum_probs=99.5
Q ss_pred CCCCccccchHHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHH
Q 039535 17 RPTERTLVGLQSQLEQVWRCLIE-----ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQ 91 (769)
Q Consensus 17 ~~~~~~~vgR~~~~~~l~~~l~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 91 (769)
|..-++|||.+..++.+.-.+.. +....+.+|||||+||||||.-++++. ...| .+.+...-....++
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~---~~~sg~~i~k~~dl- 92 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNF---KITSGPAIEKAGDL- 92 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--E---EEEECCC--SCHHH-
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCe---EeccchhhhhHHHH-
Confidence 33458899999999997666542 345689999999999999999999998 3322 22222111112222
Q ss_pred HHHHHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEccccccc---------ccc---------------cccccCC
Q 039535 92 EDIGKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERL---------DLT---------------KVGVPLP 147 (769)
Q Consensus 92 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~---------~~~---------------~~~~~l~ 147 (769)
..++..+ + ++-++++|++.... ..+ .+...+|
T Consensus 93 ~~il~~l-----------------------~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 93 AAILTNL-----------------------K-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp HHHHHT--------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred HHHHHhc-----------------------C-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 2222222 1 33467778874210 011 1111122
Q ss_pred CCCCCCcEEEEEcCchhhhcccCC-C-ceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHH
Q 039535 148 GPKNTTSKVVFTTRFFDVCGSMEA-H-RTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTI 225 (769)
Q Consensus 148 ~~~~~~~~iiittr~~~~~~~~~~-~-~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 225 (769)
+.+.|-.|||..-+.+.+.. . ...+++.++.+|..+++.+.+..-+... .++.+..|++.+.|.|.-...+
T Consensus 149 ----~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i---~~~~~~~Ia~rsrGtPRiAnrl 221 (233)
T PF05496_consen 149 ----PFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEI---DEDAAEEIARRSRGTPRIANRL 221 (233)
T ss_dssp ------EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHHHH
T ss_pred ----CceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHhcCCChHHHHHH
Confidence 34567778887655444332 2 3358999999999999998876544322 2567889999999999887777
Q ss_pred HHHhc
Q 039535 226 GRAMA 230 (769)
Q Consensus 226 ~~~l~ 230 (769)
.+.++
T Consensus 222 l~rvr 226 (233)
T PF05496_consen 222 LRRVR 226 (233)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 76664
No 43
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.00 E-value=1.4e-10 Score=121.65 Aligned_cols=35 Identities=17% Similarity=0.110 Sum_probs=21.6
Q ss_pred cccccceEeecCccccccc-----c-ccccc-CCccEEeecCC
Q 039535 625 VFRSLRRVTMVSCHKLKDL-----T-FLVFA-PNLKSISLGDC 660 (769)
Q Consensus 625 ~~~~L~~L~L~~~~~l~~l-----~-~l~~l-~~L~~L~l~~~ 660 (769)
.+++|+++++++|. +++- . .+... +.|+.|++.++
T Consensus 276 ~~~~L~~l~l~~N~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 276 EKESLLELDLRGNK-FGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred cCCCccEEECCCCC-CcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 45788888888884 4432 1 22233 67888877664
No 44
>PRK06893 DNA replication initiation factor; Validated
Probab=98.99 E-value=4.3e-09 Score=103.17 Aligned_cols=156 Identities=15% Similarity=0.206 Sum_probs=93.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRS 120 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 120 (769)
..+.+.|+|++|+|||+|+++++++.. .....+.|++.... ..... .+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~---~~~~~-----------------------~~~~~ 88 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKS---QYFSP-----------------------AVLEN 88 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHh---hhhhH-----------------------HHHhh
Confidence 345789999999999999999999972 22334567665311 00001 11112
Q ss_pred hccceEEEEEcccccc---cccc-cccccCCCCCCCCcEE-EEEcCc---------hhhhcccCCCceEEeecCCHHHHH
Q 039535 121 LREKRIVLLLDDIWER---LDLT-KVGVPLPGPKNTTSKV-VFTTRF---------FDVCGSMEAHRTFEVACLSEKDAW 186 (769)
Q Consensus 121 l~~~~~llvlDd~~~~---~~~~-~~~~~l~~~~~~~~~i-iittr~---------~~~~~~~~~~~~~~l~~l~~~e~~ 186 (769)
+. +.-++|+||++.. .+|+ .+...+......+..+ ++|++. +++.+.+.....+++++++.++.+
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 22 2248999999753 2222 1222222111234444 455543 234444455678999999999999
Q ss_pred HHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHh
Q 039535 187 ELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAM 229 (769)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 229 (769)
+++.+.+.......+ ++..+.|++.+.|....+..+...+
T Consensus 168 ~iL~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 168 IVLQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999998875543333 4567788888887766555544433
No 45
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.95 E-value=7.6e-09 Score=102.19 Aligned_cols=177 Identities=13% Similarity=0.121 Sum_probs=106.4
Q ss_pred Cccccc--hHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 039535 20 ERTLVG--LQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKR 97 (769)
Q Consensus 20 ~~~~vg--R~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 97 (769)
-++|++ .+..++.+.+++.....+.+.|+|++|+|||++|+.++++.. ......+++++..-... .
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~~~------~--- 81 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELAQA------D--- 81 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHHHh------H---
Confidence 356663 555777777776555667899999999999999999999872 22334566654332110 0
Q ss_pred cCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccccc----cccccccCCCCCCCCcEEEEEcCchh---------
Q 039535 98 IGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERLD----LTKVGVPLPGPKNTTSKVVFTTRFFD--------- 164 (769)
Q Consensus 98 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~----~~~~~~~l~~~~~~~~~iiittr~~~--------- 164 (769)
..+.+.+.+ .-++|+||++.... ...+...+......+..+|+|++...
T Consensus 82 -----------------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~ 143 (226)
T TIGR03420 82 -----------------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPD 143 (226)
T ss_pred -----------------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHH
Confidence 011112222 23899999965321 22222222211122346888877432
Q ss_pred hhcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHh
Q 039535 165 VCGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAM 229 (769)
Q Consensus 165 ~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 229 (769)
+.+.+.....+++++++.++...++...........+ .+..+.+++.++|+|..+..+...+
T Consensus 144 L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 144 LRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLP---DEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred HHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 1112222457999999999999999876543332222 4566788888999998776665443
No 46
>PF14516 AAA_35: AAA-like domain
Probab=98.94 E-value=4.1e-07 Score=94.39 Aligned_cols=206 Identities=14% Similarity=0.109 Sum_probs=122.6
Q ss_pred cCCCCccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC-----CCHHHH
Q 039535 16 ERPTERTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD-----PRLEKI 90 (769)
Q Consensus 16 ~~~~~~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~-----~~~~~~ 90 (769)
.++..+.+|.|...-+++.+.+.+. ...+.|.||-.+|||+|+.++.+.++ .....++++++..- .+...+
T Consensus 6 ~~~~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~---~~~~~~v~id~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 6 LPLDSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQ---QQGYRCVYIDLQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCCCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHH---HCCCEEEEEEeecCCCcccCCHHHH
Confidence 3344456689998888888888643 35889999999999999999999983 22345667776652 345555
Q ss_pred HHHHHHHc----CCCCCC---C--CCccHHHHHHHHHHHh---ccceEEEEEcccccccc----cccccccCCCC-----
Q 039535 91 QEDIGKRI----GLVDDS---W--KSKSVEEKALDIFRSL---REKRIVLLLDDIWERLD----LTKVGVPLPGP----- 149 (769)
Q Consensus 91 ~~~l~~~l----~~~~~~---~--~~~~~~~~~~~l~~~l---~~~~~llvlDd~~~~~~----~~~~~~~l~~~----- 149 (769)
++.++..+ +....- + ...........+.+.+ .++++++++|++|..-+ ..++...+..+
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 55555444 432200 0 0001112222222222 36899999999974321 11121111100
Q ss_pred C--CCCc--EEEEEcCchhh-----hcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcch
Q 039535 150 K--NTTS--KVVFTTRFFDV-----CGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPL 220 (769)
Q Consensus 150 ~--~~~~--~iiittr~~~~-----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 220 (769)
. .-.. .+++.+..... .+.+.....+++++|+.+|+.+++.++...-. ....++|...+||+|.
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPY 234 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHH
Confidence 0 0111 22222222111 11123346799999999999999988743311 2338899999999999
Q ss_pred HHHHHHHHhcCC
Q 039535 221 ALVTIGRAMASK 232 (769)
Q Consensus 221 ai~~~~~~l~~~ 232 (769)
.+..++..+...
T Consensus 235 Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 235 LVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHc
Confidence 999999988663
No 47
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.92 E-value=7.7e-10 Score=101.49 Aligned_cols=126 Identities=27% Similarity=0.305 Sum_probs=59.3
Q ss_pred cceEEEEcCCccccCCCCC-CCcceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeecc
Q 039535 360 KINFLVCAGAGLKEAPDVK-GWENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNI 438 (769)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~ 438 (769)
+...+...+..+..+.... .+.+++.|++++|.+..++.++.+++|++|++++|. +.+++..+...+++|++|++++|
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCC-CCccccchHHhCCcCCEEECcCC
Confidence 4556777777777777665 578999999999999999999999999999999998 77776543457999999999999
Q ss_pred CccccccCCccccCCCCCCEEeccCCCCCccchh----hhcCCCCceeeccCC
Q 039535 439 GYFNVLKLPLGMSKLGSLELLDISHSSIEELPEE----LKLLVNLKCLNLRWT 487 (769)
Q Consensus 439 ~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~----~~~l~~L~~L~l~~~ 487 (769)
.+..+..+ ..+..+++|++|++.+|.++..+.. +..+++|+.||-...
T Consensus 99 ~I~~l~~l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 99 KISDLNEL-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp ---SCCCC-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred cCCChHHh-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 55454444 4567899999999999999866553 678999999997544
No 48
>PRK08727 hypothetical protein; Validated
Probab=98.90 E-value=1.9e-08 Score=98.85 Aligned_cols=169 Identities=13% Similarity=0.110 Sum_probs=98.6
Q ss_pred ccccchH-HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcC
Q 039535 21 RTLVGLQ-SQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIG 99 (769)
Q Consensus 21 ~~~vgR~-~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~ 99 (769)
++||+.. ..+..+.....+.....++|+|++|+|||+|++++++... .....+.|++... ....+.
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~------~~~~~~---- 85 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA------AAGRLR---- 85 (233)
T ss_pred hhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH------hhhhHH----
Confidence 4565544 4444444333223345699999999999999999999872 2234566665322 111111
Q ss_pred CCCCCCCCccHHHHHHHHHHHhccceEEEEEccccccc---ccc-cccccCCCCCCCCcEEEEEcCchh---------hh
Q 039535 100 LVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERL---DLT-KVGVPLPGPKNTTSKVVFTTRFFD---------VC 166 (769)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~---~~~-~~~~~l~~~~~~~~~iiittr~~~---------~~ 166 (769)
...+.+. +.-++|+||++... .+. .+...+......+..+|+|++... +.
T Consensus 86 ----------------~~~~~l~-~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~ 148 (233)
T PRK08727 86 ----------------DALEALE-GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLR 148 (233)
T ss_pred ----------------HHHHHHh-cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHH
Confidence 1112221 22489999996432 111 122222211123556888887432 23
Q ss_pred cccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHH
Q 039535 167 GSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLAL 222 (769)
Q Consensus 167 ~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 222 (769)
+.+.....+++++++.++..+++.+++.......+ ++....|++.++|-...+
T Consensus 149 SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 149 SRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 33344568999999999999999987755443333 456678888887655544
No 49
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.87 E-value=2.3e-07 Score=91.11 Aligned_cols=175 Identities=17% Similarity=0.152 Sum_probs=106.8
Q ss_pred ccccchHHHHHH---HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 039535 21 RTLVGLQSQLEQ---VWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKR 97 (769)
Q Consensus 21 ~~~vgR~~~~~~---l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 97 (769)
.++||.+..+.+ |.+++.+++.+.+++|||+|+||||||+.++..- +.+. +.||..+....--.-.+.++++
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k~~S--yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---KKHS--YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc---CCCc--eEEEEEeccccchHHHHHHHHH
Confidence 455665554432 2333445778889999999999999999999886 2222 6677766543333333333322
Q ss_pred cCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccc--cccccccccccCCCCCCCCcEEEE--EcCchhh---hcccC
Q 039535 98 IGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIW--ERLDLTKVGVPLPGPKNTTSKVVF--TTRFFDV---CGSME 170 (769)
Q Consensus 98 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~--~~~~~~~~~~~l~~~~~~~~~iii--ttr~~~~---~~~~~ 170 (769)
-. -...+.++|.++++|++. +..+-+.|.... ..|..++| ||.++.+ .+.+.
T Consensus 213 aq-----------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~V----E~G~I~lIGATTENPSFqln~aLlS 271 (554)
T KOG2028|consen 213 AQ-----------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV----ENGDITLIGATTENPSFQLNAALLS 271 (554)
T ss_pred HH-----------------HHHhhhcceeEEEeHHhhhhhhhhhhccccee----ccCceEEEecccCCCccchhHHHHh
Confidence 11 122346789999999994 334444443332 34444444 6776654 33345
Q ss_pred CCceEEeecCCHHHHHHHHHHHhc------cccCCCch----hHHHHHHHHHHHhCCcchH
Q 039535 171 AHRTFEVACLSEKDAWELFQEKVG------EETLKSDH----DIAELAQTVAKKCGGLPLA 221 (769)
Q Consensus 171 ~~~~~~l~~l~~~e~~~l~~~~~~------~~~~~~~~----~~~~~~~~i~~~~~G~Pla 221 (769)
...++.++.|..++...++.+... +..+...+ .-..+.+.++..++|-..+
T Consensus 272 RC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 272 RCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred ccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 567899999999999999988442 11111111 1245677888888886643
No 50
>PRK04195 replication factor C large subunit; Provisional
Probab=98.84 E-value=1.3e-07 Score=103.63 Aligned_cols=244 Identities=18% Similarity=0.206 Sum_probs=136.5
Q ss_pred CCccccchHHHHHHHHHHhhc---C-CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHH
Q 039535 19 TERTLVGLQSQLEQVWRCLIE---E-SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDI 94 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~---~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 94 (769)
.-++++|++..++.+.+|+.. + ..+.+.|+||+|+||||+|+.+++++ .+. ++-++.+...... ....+
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~-~ielnasd~r~~~-~i~~~ 84 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWE-VIELNASDQRTAD-VIERV 84 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCC-EEEEcccccccHH-HHHHH
Confidence 346789999999999999864 2 25789999999999999999999997 122 2333333322222 22222
Q ss_pred HHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccccc------cccccccCCCCCCCCcEEEEEcCchh-hh-
Q 039535 95 GKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERLD------LTKVGVPLPGPKNTTSKVVFTTRFFD-VC- 166 (769)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~------~~~~~~~l~~~~~~~~~iiittr~~~-~~- 166 (769)
+....... .....++-+||+|+++.... ...+...+. .....||+++.+.. ..
T Consensus 85 i~~~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~---~~~~~iIli~n~~~~~~~ 145 (482)
T PRK04195 85 AGEAATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK---KAKQPIILTANDPYDPSL 145 (482)
T ss_pred HHHhhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH---cCCCCEEEeccCccccch
Confidence 22211100 00113577999999975422 333333332 12234555554322 11
Q ss_pred -cccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHhcCCC---CHHHHHHHH
Q 039535 167 -GSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAMASKK---TAEEWRHAI 242 (769)
Q Consensus 167 -~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~---~~~~~~~~l 242 (769)
..-.....+.+.+++.++...++.+.+...+...+ .+....|++.++|....+......+.... +.+......
T Consensus 146 k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~ 222 (482)
T PRK04195 146 RELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLG 222 (482)
T ss_pred hhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhh
Confidence 11133567999999999999999988866553333 35677899999887665544433333321 223222211
Q ss_pred HHHhcccCCCCCCccchhhHHHhhhcCCCccccchhhceecccCCCccccHHHHHHHHhhcCcccc
Q 039535 243 EELGRSASEFPGLGKEVYPVLKFSYDSLPNETIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEE 308 (769)
Q Consensus 243 ~~l~~~~~~~~~~~~~i~~~l~~~~~~L~~~~~~~~~~~~~~~p~~~~i~~~~l~~~w~~~g~~~~ 308 (769)
. ......++.++..-+..=..+.+...+.. ..++. ..+..|+.+.++..
T Consensus 223 ----~-----~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 223 ----R-----RDREESIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred ----c-----CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhccccc
Confidence 1 11123566666655542222122222221 11222 35678999888765
No 51
>PTZ00202 tuzin; Provisional
Probab=98.83 E-value=2e-07 Score=95.15 Aligned_cols=167 Identities=18% Similarity=0.173 Sum_probs=105.5
Q ss_pred cccccCCCCccccchHHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHH
Q 039535 12 SVADERPTERTLVGLQSQLEQVWRCLIE---ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLE 88 (769)
Q Consensus 12 ~~~~~~~~~~~~vgR~~~~~~l~~~l~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 88 (769)
.....|+...+|+||+++++.+...+.+ +..++++|+|++|+|||||++.++... . + ...+++.. +..
T Consensus 253 ~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l---~--~-~qL~vNpr---g~e 323 (550)
T PTZ00202 253 TLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE---G--M-PAVFVDVR---GTE 323 (550)
T ss_pred cccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC---C--c-eEEEECCC---CHH
Confidence 3556777889999999999999999964 234688999999999999999999776 1 1 13333322 679
Q ss_pred HHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-----c-cceEEEEEccccccccccccc---ccCCCCCCCCcEEEEE
Q 039535 89 KIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-----R-EKRIVLLLDDIWERLDLTKVG---VPLPGPKNTTSKVVFT 159 (769)
Q Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~-~~~~llvlDd~~~~~~~~~~~---~~l~~~~~~~~~iiit 159 (769)
++++.++.+++.... ....++.+.+.+.+ . +++.+||+-=- +..++..+. ..+. ....-|.|++-
T Consensus 324 ElLr~LL~ALGV~p~----~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lr-eg~~l~rvyne~v~la-~drr~ch~v~e 397 (550)
T PTZ00202 324 DTLRSVVKALGVPNV----EACGDLLDFISEACRRAKKMNGETPLLVLKLR-EGSSLQRVYNEVVALA-CDRRLCHVVIE 397 (550)
T ss_pred HHHHHHHHHcCCCCc----ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEec-CCCcHHHHHHHHHHHH-ccchhheeeee
Confidence 999999999997332 22233444443333 2 55666655322 222211110 0111 22234566654
Q ss_pred cCchhhh---cccCCCceEEeecCCHHHHHHHHHHHh
Q 039535 160 TRFFDVC---GSMEAHRTFEVACLSEKDAWELFQEKV 193 (769)
Q Consensus 160 tr~~~~~---~~~~~~~~~~l~~l~~~e~~~l~~~~~ 193 (769)
---+++. ..+.....|.+++|+.++|.++.+...
T Consensus 398 vpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 398 VPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred ehHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 4333321 112334679999999999999988765
No 52
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=1.1e-07 Score=100.22 Aligned_cols=194 Identities=18% Similarity=0.194 Sum_probs=109.3
Q ss_pred CccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHc
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESA-GIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRI 98 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l 98 (769)
-+++||.+..++.+...+..++. ..+.++||+|+||||+|+.+++.+. ....... .+-..-..-+.+....
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~-c~~~~~~-------~pc~~c~~c~~~~~~~ 86 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN-CQNGITS-------NPCRKCIICKEIEKGL 86 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc-CCCCCCC-------CCCCCCHHHHHHhcCC
Confidence 36789999999999999876654 4578999999999999999999872 1000000 0000000000000000
Q ss_pred CCCC---CCCCCccHHHHHHHHHHHh-----ccceEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCchh-hhc
Q 039535 99 GLVD---DSWKSKSVEEKALDIFRSL-----REKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVFTTRFFD-VCG 167 (769)
Q Consensus 99 ~~~~---~~~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iiittr~~~-~~~ 167 (769)
.... +.......++ ++.+.+.. .+++-++|+|+++... .+..+...+. .......+|++|.+.. +..
T Consensus 87 ~~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lE-e~~~~~~fIl~t~~~~~l~~ 164 (363)
T PRK14961 87 CLDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLE-EPPQHIKFILATTDVEKIPK 164 (363)
T ss_pred CCceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHh-cCCCCeEEEEEcCChHhhhH
Confidence 0000 0000011111 22222222 2345699999997543 2333433333 2334556666665432 322
Q ss_pred c-cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 168 S-MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 168 ~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
. .+....+++.+++.++..+++...+...+...+ ++.+..|++.++|.|..+....
T Consensus 165 tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~---~~al~~ia~~s~G~~R~al~~l 221 (363)
T PRK14961 165 TILSRCLQFKLKIISEEKIFNFLKYILIKESIDTD---EYALKLIAYHAHGSMRDALNLL 221 (363)
T ss_pred HHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 2 233468999999999999999887765442222 3567789999999886544443
No 53
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.83 E-value=6.9e-08 Score=101.86 Aligned_cols=198 Identities=11% Similarity=0.069 Sum_probs=111.0
Q ss_pred CccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHH----
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIG---- 95 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~---- 95 (769)
-++++|++..++.+..++..+..+.+.++||+|+|||++|+.+++.+.. .........+++.... ......+.
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~-~~~~~~~~~i~~~~~~--~~~~~~~~~~~~ 90 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVADFF--DQGKKYLVEDPR 90 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC-cccccceEEechhhhh--hcchhhhhcCcc
Confidence 3678999999999999997766667899999999999999999998721 1101123444432210 00000000
Q ss_pred --HHcCCCCCCCCCccHHHHHHHHHHH----h--ccceEEEEEcccccccc--cccccccCCCCCCCCcEEEEEcCc-hh
Q 039535 96 --KRIGLVDDSWKSKSVEEKALDIFRS----L--REKRIVLLLDDIWERLD--LTKVGVPLPGPKNTTSKVVFTTRF-FD 164 (769)
Q Consensus 96 --~~l~~~~~~~~~~~~~~~~~~l~~~----l--~~~~~llvlDd~~~~~~--~~~~~~~l~~~~~~~~~iiittr~-~~ 164 (769)
..++.. ........+.++.+.+. . .+.+-++|+||++.... ...+...+. .....+++|+|+.. ..
T Consensus 91 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le-~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 91 FAHFLGTD--KRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIME-QYSRTCRFIIATRQPSK 167 (337)
T ss_pred hhhhhhhh--hhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHH-hccCCCeEEEEeCChhh
Confidence 000000 00001111222222211 1 23345899999964421 222222222 22234566666643 22
Q ss_pred hhccc-CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 165 VCGSM-EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 165 ~~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
....+ .....+.+.+++.++..+++.+.+...+...+ .+.++.+++.++|.+..+....
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~al~~l~~~~~gdlr~l~~~l 227 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD---DDGLELIAYYAGGDLRKAILTL 227 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 22221 23467899999999999999988765543323 4567788888888776554433
No 54
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.82 E-value=5.7e-08 Score=108.72 Aligned_cols=182 Identities=18% Similarity=0.152 Sum_probs=111.0
Q ss_pred CccccchHHHHHHHHHHhhcCCceE-EEEEcCCCCcHHHHHHHHHhhhhhccCC-------------------CCEEEEE
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESAGI-IGLYGMGGVGKTTLLIHINNKFLESRTN-------------------FDFVIWV 79 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~~~-v~I~G~~GiGKTtLa~~~~~~~~~~~~~-------------------~~~~~w~ 79 (769)
-.++||.+..++.|..++..++... +.++|++|+||||+|+.+++.+-- ... +..++++
T Consensus 15 FddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc-e~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC-EQGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC-ccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 3678999999999999998776555 589999999999999999999821 111 0111111
Q ss_pred EecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHH-hccceEEEEEcccccc--cccccccccCCCCCCCCcEE
Q 039535 80 VVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRS-LREKRIVLLLDDIWER--LDLTKVGVPLPGPKNTTSKV 156 (769)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~llvlDd~~~~--~~~~~~~~~l~~~~~~~~~i 156 (769)
+..... ....+.+++..+... ..+++-++|||+++.. .....+...+. ......++
T Consensus 94 dAas~~--------------------kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLE-EPP~~vrF 152 (944)
T PRK14949 94 DAASRT--------------------KVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLE-EPPEHVKF 152 (944)
T ss_pred cccccc--------------------CHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHh-ccCCCeEE
Confidence 110000 001112222222111 2456779999999653 23333333333 22334556
Q ss_pred EEEcCc-hhhhcc-cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 157 VFTTRF-FDVCGS-MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 157 iittr~-~~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
|++|.+ ..+... ......+++.+++.++..+++.+.+.......+ .+.+..|++.++|.|..+..+.
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~e---deAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFE---AEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 665554 333222 234578999999999999999987765432222 4567789999999887555444
No 55
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.81 E-value=1.3e-07 Score=103.91 Aligned_cols=180 Identities=15% Similarity=0.131 Sum_probs=110.6
Q ss_pred CccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhhhccC-------------------CCCEEEEE
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESA-GIIGLYGMGGVGKTTLLIHINNKFLESRT-------------------NFDFVIWV 79 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------~~~~~~w~ 79 (769)
-+++||.+..++.|..++..++. ..+.++|+.|+||||+|+.+++.+- -.. .+..++++
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn-Ce~~~~~~PCG~C~sCr~I~~G~h~DviEI 93 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN-CETGVTSQPCGVCRACREIDEGRFVDYVEM 93 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CccCCCCCCCcccHHHHHHhcCCCceEEEe
Confidence 36789999999999999987654 4568999999999999999999872 110 11112222
Q ss_pred EecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHH-hccceEEEEEcccccccc--cccccccCCCCCCCCcEE
Q 039535 80 VVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRS-LREKRIVLLLDDIWERLD--LTKVGVPLPGPKNTTSKV 156 (769)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~llvlDd~~~~~~--~~~~~~~l~~~~~~~~~i 156 (769)
+........ ++.++++..... ..++.-++|||+++.... +..+...+. ......++
T Consensus 94 DAas~rgVD--------------------dIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLE-EPP~~v~F 152 (830)
T PRK07003 94 DAASNRGVD--------------------EMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLE-EPPPHVKF 152 (830)
T ss_pred cccccccHH--------------------HHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHH-hcCCCeEE
Confidence 221111111 111112111111 134556899999975432 333333333 23346777
Q ss_pred EEEcCchhh-h-cccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcch-HHHH
Q 039535 157 VFTTRFFDV-C-GSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPL-ALVT 224 (769)
Q Consensus 157 iittr~~~~-~-~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~ 224 (769)
|++|++... . +-......+++..++.++..+.+.+.+..++...+ .+....|++.++|... ++..
T Consensus 153 ILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id---~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 153 ILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE---PQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred EEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 777776432 2 22234578999999999999999998876553333 4567788999988654 4444
No 56
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=8.4e-08 Score=104.12 Aligned_cols=177 Identities=16% Similarity=0.168 Sum_probs=111.0
Q ss_pred CccccchHHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhhhhccC-------------------CCCEEEEE
Q 039535 20 ERTLVGLQSQLEQVWRCLIEES-AGIIGLYGMGGVGKTTLLIHINNKFLESRT-------------------NFDFVIWV 79 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------~~~~~~w~ 79 (769)
-+++||.+...+.|..++..++ ...+.++|++|+||||+|+.+++.+ .-.. .+..++.+
T Consensus 14 FddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L-nC~~~~~~~pCg~C~sC~~I~~g~hpDviEI 92 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL-NCETGVTSTPCEVCATCKAVNEGRFIDLIEI 92 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-CCCcCCCCCCCccCHHHHHHhcCCCCceEEe
Confidence 3678999999999999998765 4567999999999999999999987 1100 01111111
Q ss_pred EecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHH-----hccceEEEEEcccccc--cccccccccCCCCCCC
Q 039535 80 VVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRS-----LREKRIVLLLDDIWER--LDLTKVGVPLPGPKNT 152 (769)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~-----l~~~~~llvlDd~~~~--~~~~~~~~~l~~~~~~ 152 (769)
+... ...+++. +.+.+. ..+++-++|+|+++.. .....+...+. ....
T Consensus 93 DAAs-----------------------~~~VddI-Reli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLE-EPP~ 147 (702)
T PRK14960 93 DAAS-----------------------RTKVEDT-RELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLE-EPPE 147 (702)
T ss_pred cccc-----------------------cCCHHHH-HHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHh-cCCC
Confidence 1111 1112221 112211 1355678999999753 23333433333 2234
Q ss_pred CcEEEEEcCchh-hh-cccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHH
Q 039535 153 TSKVVFTTRFFD-VC-GSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTI 225 (769)
Q Consensus 153 ~~~iiittr~~~-~~-~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 225 (769)
+..+|++|.+.. +. +.......+++.+++.++..+.+.+.+...+...+ .+....|++.++|.+..+..+
T Consensus 148 ~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id---~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 148 HVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD---QDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred CcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 556777666532 21 22244578999999999999999998876553333 356778999999977655443
No 57
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.79 E-value=6.3e-08 Score=95.32 Aligned_cols=175 Identities=14% Similarity=0.125 Sum_probs=101.3
Q ss_pred cccc-chHH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHc
Q 039535 21 RTLV-GLQS-QLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRI 98 (769)
Q Consensus 21 ~~~v-gR~~-~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l 98 (769)
++|+ |... .+..+.++......+.++|+|++|+|||+|++.+++... .....+.++++..... .
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~---~-------- 87 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW---F-------- 87 (235)
T ss_pred cccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh---h--------
Confidence 4454 6333 444444444334456889999999999999999999872 2334566766532100 0
Q ss_pred CCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccc---ccccc-ccccCCCCC-CCCcEEEEEcCchh---------
Q 039535 99 GLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWER---LDLTK-VGVPLPGPK-NTTSKVVFTTRFFD--------- 164 (769)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~---~~~~~-~~~~l~~~~-~~~~~iiittr~~~--------- 164 (769)
..+. .+.+.. .-++++||++.. .+|+. +...+.... .+...+|+|++.+.
T Consensus 88 -----------~~~~----~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~ 151 (235)
T PRK08084 88 -----------VPEV----LEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPD 151 (235)
T ss_pred -----------hHHH----HHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHH
Confidence 0111 111111 137889999643 22221 111111011 12246888887542
Q ss_pred hhcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHH
Q 039535 165 VCGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRA 228 (769)
Q Consensus 165 ~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 228 (769)
+.+++.....+++.+++.++..+++.+.+...+...+ ++....|++.+.|....+..+...
T Consensus 152 L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 152 LASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELP---EDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred HHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhhcCCHHHHHHHHHH
Confidence 2344455678999999999999999886755443333 466778888887766555444433
No 58
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=1.3e-07 Score=102.77 Aligned_cols=195 Identities=18% Similarity=0.107 Sum_probs=111.8
Q ss_pred ccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcC
Q 039535 21 RTLVGLQSQLEQVWRCLIEESAG-IIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIG 99 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~ 99 (769)
+++||.+..++.|..++..++.. .+.++|++|+||||+|+.+++.+. ..+.....+|.+.+.. .+....+.-+..+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~-c~~~~~~~cg~C~sc~-~i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN-CSGEDPKPCGECESCL-AVRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh-ccCCCCCCCCcChhhH-HHhcCCCCceEEec
Confidence 67899999999999998876654 459999999999999999999882 1111111222221110 00000000000000
Q ss_pred CCCCCCCCccHHHHHHHHHHH-----hccceEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCc-hhhhcc-cC
Q 039535 100 LVDDSWKSKSVEEKALDIFRS-----LREKRIVLLLDDIWER--LDLTKVGVPLPGPKNTTSKVVFTTRF-FDVCGS-ME 170 (769)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~-----l~~~~~llvlDd~~~~--~~~~~~~~~l~~~~~~~~~iiittr~-~~~~~~-~~ 170 (769)
.. .....+. ++.+.+. ..+++-++|+|+++.. ..+..+...+. .....+.+|+++.. ..+... ..
T Consensus 92 ~~----~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LE-ep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 92 AA----SNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLE-EPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred cc----ccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHH-hCCCCEEEEEEcCChhhCChHHhc
Confidence 00 0111111 1112221 2345668999999743 23444544444 22334455555543 333222 23
Q ss_pred CCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 171 AHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 171 ~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
....+++.+++.++..+++.+.+...+...+ ++.+..|++.++|.+.-+....
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi~i~---~~Al~~ia~~s~GdlR~aln~L 218 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGREAE---PEALQLVARLADGAMRDAESLL 218 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 4568999999999999999998865543333 4567889999999886554333
No 59
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.3e-09 Score=109.32 Aligned_cols=113 Identities=22% Similarity=0.208 Sum_probs=65.1
Q ss_pred CCCCCceEEEeecccchhcccC-cccccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCccchh--hhcC
Q 039535 400 PTCPHLLTLFLDFNRELMMIAG-GYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEELPEE--LKLL 476 (769)
Q Consensus 400 ~~~~~L~~L~l~~~~~~~~i~~-~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~--~~~l 476 (769)
+++.+|+.+.|.++. +...+. +..+.|++++.|+|+.|-+.+...+......+++|+.|+++.|++.....+ ...+
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 456677777777544 443331 345667777777777775545554555556677777777777765532211 2345
Q ss_pred CCCceeeccCCCcccccchHHhcCCCcCcEEEeeccC
Q 039535 477 VNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATG 513 (769)
Q Consensus 477 ~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~ 513 (769)
++|+.|.++.|...+.--..+...+++|..|.+..|.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc
Confidence 5666666666654443333334455666666666553
No 60
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.2e-09 Score=109.69 Aligned_cols=161 Identities=16% Similarity=0.111 Sum_probs=114.4
Q ss_pred CCCcceeEEEEeeccccccC---CCCCCCCceEEEeecccchh-cccCcccccCCcccEEEeeccCccccccCCcc--cc
Q 039535 378 KGWENVRRLSLMQNQIKVLS---EVPTCPHLLTLFLDFNRELM-MIAGGYFQFMPSLKVLKISNIGYFNVLKLPLG--MS 451 (769)
Q Consensus 378 ~~~~~l~~l~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~-~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~--~~ 451 (769)
..+++|+...|.+..+..+. -...|++++.|+||+|-... ..-..+...+++|+.|+|+.|. +...-++ -.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr---l~~~~~s~~~~ 194 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR---LSNFISSNTTL 194 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc---ccCCccccchh
Confidence 34567888888888876554 35779999999999987322 2224556889999999999994 3322111 23
Q ss_pred CCCCCCEEeccCCCCC--ccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCC
Q 039535 452 KLGSLELLDISHSSIE--ELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGG 529 (769)
Q Consensus 452 ~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 529 (769)
.+.+|+.|.+++|+++ .+-..+-.+++|+.|++.+|..+..-... ..-++.|++|++++|.+..+
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~------------ 261 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDF------------ 261 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccccc------------
Confidence 6789999999999998 34444567899999999999422221111 45678899999999998753
Q ss_pred ccchhhhhhcCCCceEEEEEeCChhhH
Q 039535 530 GEVLIQELLGLKYLEVLELTLGSYHAL 556 (769)
Q Consensus 530 ~~~~~~~l~~l~~L~~l~l~~~~~~~~ 556 (769)
.....++.++.|+.|.++.+.++.+
T Consensus 262 --~~~~~~~~l~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 262 --DQGYKVGTLPGLNQLNLSSTGIASI 286 (505)
T ss_pred --ccccccccccchhhhhccccCcchh
Confidence 2345567888888888776655443
No 61
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=1.2e-07 Score=98.34 Aligned_cols=198 Identities=12% Similarity=0.098 Sum_probs=111.3
Q ss_pred CCccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhhhccCC-CCEEEEEEecCCCCHHHHHHHHHH
Q 039535 19 TERTLVGLQSQLEQVWRCLIEESA-GIIGLYGMGGVGKTTLLIHINNKFLESRTN-FDFVIWVVVSKDPRLEKIQEDIGK 96 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~~~~~l~~ 96 (769)
....++|.+...+.+...+.+++. ..+.|+|+.|+||||+|+.+++.+-..... +... ............+.+..
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~ 97 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQ 97 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHc
Confidence 336789999999999999987664 468899999999999999999988221000 1000 00001011112223222
Q ss_pred H-------cCCCCCC-----CCCccHHHHHHHHHHHh-----ccceEEEEEccccccc--ccccccccCCCCCCCCcE-E
Q 039535 97 R-------IGLVDDS-----WKSKSVEEKALDIFRSL-----REKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSK-V 156 (769)
Q Consensus 97 ~-------l~~~~~~-----~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~-i 156 (769)
. +....+. .....+++ ++.+.+.+ .+++-++|+|+++... ....+...+. ....... |
T Consensus 98 ~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LE-Epp~~~~fi 175 (351)
T PRK09112 98 GAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLE-EPPARALFI 175 (351)
T ss_pred CCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHh-cCCCCceEE
Confidence 1 1000000 01122333 33444444 3456799999997532 2222322222 1122344 4
Q ss_pred EEEcCchhhhccc-CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 157 VFTTRFFDVCGSM-EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 157 iittr~~~~~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
++|++...+...+ .....+++.+++.++..+++.+...... ..++.+..+++.++|.|.....+.
T Consensus 176 Lit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 176 LISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4454443332222 2356899999999999999988532211 113456788999999998665444
No 62
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.75 E-value=7.5e-07 Score=85.07 Aligned_cols=193 Identities=17% Similarity=0.143 Sum_probs=111.6
Q ss_pred CccccchHHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHH
Q 039535 20 ERTLVGLQSQLEQVWRCLIE-----ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDI 94 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 94 (769)
-.+|||.++..++|.-.+.. +..-.|.++||||.||||||.-+++++ ..+ +-+.-++.-.-..-+..+
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em---gvn----~k~tsGp~leK~gDlaai 97 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL---GVN----LKITSGPALEKPGDLAAI 97 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh---cCC----eEecccccccChhhHHHH
Confidence 36799999999998777653 345689999999999999999999999 222 222222222222233344
Q ss_pred HHHcCCCCCCCCCccHHHHHHHHHHHh----ccceEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhhhcccC
Q 039535 95 GKRIGLVDDSWKSKSVEEKALDIFRSL----REKRIVLLLDDIWERLDLTKVGVPLPGPKNTTSKVVFTTRFFDVCGSME 170 (769)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~l~~~l----~~~~~llvlDd~~~~~~~~~~~~~l~~~~~~~~~iiittr~~~~~~~~~ 170 (769)
+..+...+ -..-++.+.+...+.+.+ .+-++=+++..= ..-+.+...+| +.+.|=.|||...+...+.
T Consensus 98 Lt~Le~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~g---p~Arsv~ldLp----pFTLIGATTr~G~lt~PLr 169 (332)
T COG2255 98 LTNLEEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKG---PAARSIRLDLP----PFTLIGATTRAGMLTNPLR 169 (332)
T ss_pred HhcCCcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccC---CccceEeccCC----CeeEeeeccccccccchhH
Confidence 44433221 001111111111111111 222222222221 12223333333 3566778898654433322
Q ss_pred --CCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHhc
Q 039535 171 --AHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAMA 230 (769)
Q Consensus 171 --~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~ 230 (769)
-..+.+++-++.+|..+++.+.+..-+...+ ++.+.+|++.+.|.|.-...+.+.++
T Consensus 170 dRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 170 DRFGIIQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred HhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 2346789999999999999998865443333 45688999999999987766666553
No 63
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.75 E-value=2.3e-07 Score=97.09 Aligned_cols=179 Identities=11% Similarity=0.150 Sum_probs=107.1
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEe--cCCCCHHHHHHHHHHHc
Q 039535 21 RTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVV--SKDPRLEKIQEDIGKRI 98 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~--~~~~~~~~~~~~l~~~l 98 (769)
++++|++..++.+.+++..+..+.+.|+|++|+|||++|+.+++.... ..+. ..++.+ +....... .+..+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~--~~~~-~~~i~~~~~~~~~~~~-~~~~i~-- 90 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG--EDWR-ENFLELNASDERGIDV-IRNKIK-- 90 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC--Cccc-cceEEeccccccchHH-HHHHHH--
Confidence 678999999999999997766667899999999999999999998721 1111 112222 11111111 111111
Q ss_pred CCCCCCCCCccHHHHHHHHHHHh---ccceEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCch-hhhcc-cCC
Q 039535 99 GLVDDSWKSKSVEEKALDIFRSL---REKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVFTTRFF-DVCGS-MEA 171 (769)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~l---~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iiittr~~-~~~~~-~~~ 171 (769)
.+.... ...+-++++|+++... ....+...+. .....+.+|+++... .+... ...
T Consensus 91 -----------------~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le-~~~~~~~lIl~~~~~~~l~~~l~sr 152 (319)
T PRK00440 91 -----------------EFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTME-MYSQNTRFILSCNYSSKIIDPIQSR 152 (319)
T ss_pred -----------------HHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHh-cCCCCCeEEEEeCCccccchhHHHH
Confidence 111111 1235689999986432 1223333333 223345666665432 22111 123
Q ss_pred CceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 172 HRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 172 ~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
...+++.+++.++...++...+...+...+ .+.++.+++.++|.+..+....
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~---~~al~~l~~~~~gd~r~~~~~l 204 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGIEIT---DDALEAIYYVSEGDMRKAINAL 204 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 456899999999999999988865543333 4567788999999887644433
No 64
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=1.2e-07 Score=100.14 Aligned_cols=199 Identities=14% Similarity=0.099 Sum_probs=112.5
Q ss_pred CccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHc
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESAG-IIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRI 98 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l 98 (769)
-+++||.+..++.|..++..++.+ .+.++|++|+||||+|+.+++.+- . ..... ...+..-..-..+.......+
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln-c-e~~~~--~~pCg~C~sC~~i~~g~~~dv 92 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN-C-ENPIG--NEPCNECTSCLEITKGISSDV 92 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC-c-ccccC--ccccCCCcHHHHHHccCCccc
Confidence 367899999999999999877654 579999999999999999999872 1 11100 001111111111111000000
Q ss_pred CCCC--CCCCCccHHHHHHHHHHH-hccceEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCc-hhhhcc-cCC
Q 039535 99 GLVD--DSWKSKSVEEKALDIFRS-LREKRIVLLLDDIWER--LDLTKVGVPLPGPKNTTSKVVFTTRF-FDVCGS-MEA 171 (769)
Q Consensus 99 ~~~~--~~~~~~~~~~~~~~l~~~-l~~~~~llvlDd~~~~--~~~~~~~~~l~~~~~~~~~iiittr~-~~~~~~-~~~ 171 (769)
.... ......+..+..+.+... ..++.-++|+|+++.. ..+..+...+. .......+|++|.. ..+... ...
T Consensus 93 iEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLE-EPp~~viFILaTte~~kI~~TI~SR 171 (484)
T PRK14956 93 LEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLE-EPPAHIVFILATTEFHKIPETILSR 171 (484)
T ss_pred eeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhh-cCCCceEEEeecCChhhccHHHHhh
Confidence 0000 000111122222222211 2456679999999743 23444433333 22335555555544 333222 234
Q ss_pred CceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 172 HRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 172 ~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
.+.+.+.+++.++..+++.+.+...+...+ ++....|++.++|.+.-.-.+.
T Consensus 172 Cq~~~f~~ls~~~i~~~L~~i~~~Egi~~e---~eAL~~Ia~~S~Gd~RdAL~lL 223 (484)
T PRK14956 172 CQDFIFKKVPLSVLQDYSEKLCKIENVQYD---QEGLFWIAKKGDGSVRDMLSFM 223 (484)
T ss_pred hheeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCChHHHHHHHH
Confidence 567999999999999999988765543333 4567899999999886554444
No 65
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=2.4e-07 Score=100.68 Aligned_cols=182 Identities=17% Similarity=0.143 Sum_probs=108.9
Q ss_pred CccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhhhccC------------------CCCEEEEEE
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESA-GIIGLYGMGGVGKTTLLIHINNKFLESRT------------------NFDFVIWVV 80 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~------------------~~~~~~w~~ 80 (769)
-+++||.+..++.+..++..++. ..+.++|++|+||||+|+.+++.+.-... .+..+++++
T Consensus 15 f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieid 94 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEID 94 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEee
Confidence 36789999999999999976654 45789999999999999999987721000 111222222
Q ss_pred ecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHH-hccceEEEEEcccccc--cccccccccCCCCCCCCcEEE
Q 039535 81 VSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRS-LREKRIVLLLDDIWER--LDLTKVGVPLPGPKNTTSKVV 157 (769)
Q Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~llvlDd~~~~--~~~~~~~~~l~~~~~~~~~ii 157 (769)
....... .+..+.++.+... ..+++-++|+|+++.. .....+...+. .....+.+|
T Consensus 95 aas~~gv--------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LE-epp~~v~fI 153 (546)
T PRK14957 95 AASRTGV--------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLE-EPPEYVKFI 153 (546)
T ss_pred cccccCH--------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHh-cCCCCceEE
Confidence 1111111 1112222222211 2456679999999643 23334444443 233345555
Q ss_pred EEcCc-hhhhcc-cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcch-HHHHH
Q 039535 158 FTTRF-FDVCGS-MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPL-ALVTI 225 (769)
Q Consensus 158 ittr~-~~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~ 225 (769)
++|.+ ..+... ......+++.+++.++..+.+.+.+...+...+ ++....|++.++|.+. ++..+
T Consensus 154 L~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e---~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 154 LATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSD---EQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred EEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 44443 333322 234578999999999999999887755442222 3556788999999665 44333
No 66
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=7.2e-10 Score=105.41 Aligned_cols=185 Identities=20% Similarity=0.191 Sum_probs=104.3
Q ss_pred CCCCEEeccCCCCC--ccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCcc
Q 039535 454 GSLELLDISHSSIE--ELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGE 531 (769)
Q Consensus 454 ~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 531 (769)
..|++|+|+...|+ .+..-+..|.+|+.|.+.++..-..+... +.+=.+|+.|++++|...+ ..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t-------------~n 250 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFT-------------EN 250 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccc-------------hh
Confidence 45888888888777 45445677778888888877644445444 5566778888888776553 12
Q ss_pred chhhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccccceeeccccCcceEee
Q 039535 532 VLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGLEELKI 611 (769)
Q Consensus 532 ~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~l 611 (769)
.....+.+|+.|..|.++++.......-....... ++|..|+|+||.. ++
T Consensus 251 ~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his--------------------------e~l~~LNlsG~rr----nl 300 (419)
T KOG2120|consen 251 ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS--------------------------ETLTQLNLSGYRR----NL 300 (419)
T ss_pred HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc--------------------------hhhhhhhhhhhHh----hh
Confidence 23344566777777777766543322211122222 4455555555532 11
Q ss_pred eeeccccccCCCccccccceEeecCcccccc--cccccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCccc
Q 039535 612 DYTEIAQKRREPFVFRSLRRVTMVSCHKLKD--LTFLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQ 689 (769)
Q Consensus 612 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~--l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 689 (769)
..+.+..+ ...+++|.+|+|++|..+++ +..+..++.|++|+++.|..+. |+.+-.+...|+|+
T Consensus 301 ~~sh~~tL---~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~-----------p~~~~~l~s~psl~ 366 (419)
T KOG2120|consen 301 QKSHLSTL---VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII-----------PETLLELNSKPSLV 366 (419)
T ss_pred hhhHHHHH---HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC-----------hHHeeeeccCcceE
Confidence 11111111 13466677777777666655 2235566777777777775431 23333455566777
Q ss_pred ccccccc
Q 039535 690 NLDLSYL 696 (769)
Q Consensus 690 ~L~l~~c 696 (769)
+|++.+|
T Consensus 367 yLdv~g~ 373 (419)
T KOG2120|consen 367 YLDVFGC 373 (419)
T ss_pred EEEeccc
Confidence 7777766
No 67
>PLN03025 replication factor C subunit; Provisional
Probab=98.71 E-value=1.7e-07 Score=97.29 Aligned_cols=181 Identities=13% Similarity=0.124 Sum_probs=105.9
Q ss_pred CccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCC-EEEEEEecCCCCHHHHHHHHHHHc
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFD-FVIWVVVSKDPRLEKIQEDIGKRI 98 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~l~~~l 98 (769)
-.+++|.+..++.+.+++..+..+.+.++||+|+||||+|+.+++.+. ...+. .++-++.+...+.. ..+......
T Consensus 12 l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~-~vr~~i~~~ 88 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGID-VVRNKIKMF 88 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHH-HHHHHHHHH
Confidence 367899999999999888776667788999999999999999999872 11111 12212222111111 111111111
Q ss_pred CCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccccc--cccccccCCCCCCCCcEEEEEcCch-hhhcc-cCCCce
Q 039535 99 GLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERLD--LTKVGVPLPGPKNTTSKVVFTTRFF-DVCGS-MEAHRT 174 (769)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~--~~~~~~~l~~~~~~~~~iiittr~~-~~~~~-~~~~~~ 174 (769)
..... ....++.-++|+|+++.... ...+...+. .....+++++++... .+... ......
T Consensus 89 ~~~~~---------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE-~~~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 89 AQKKV---------------TLPPGRHKIVILDEADSMTSGAQQALRRTME-IYSNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred Hhccc---------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHh-cccCCceEEEEeCCccccchhHHHhhhc
Confidence 00000 00023467999999975421 122222222 223345666666432 22111 123457
Q ss_pred EEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHH
Q 039535 175 FEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLAL 222 (769)
Q Consensus 175 ~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 222 (769)
+++.+++.++..+.+.+.+...+...+ .+..+.|++.++|....+
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 999999999999999998866553333 355778888888866443
No 68
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=2.7e-07 Score=98.81 Aligned_cols=183 Identities=16% Similarity=0.149 Sum_probs=112.0
Q ss_pred CccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhhhhcc-------------------CCCCEEEEE
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESAG-IIGLYGMGGVGKTTLLIHINNKFLESR-------------------TNFDFVIWV 79 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~~~~~~~w~ 79 (769)
-.++||.+..++.+..++..++.. .+.++|+.|+||||+|+.+++.+ .-. .....++.+
T Consensus 12 f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~L-nC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCL-NCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHH-cCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 367899999999999988776654 78999999999999999998865 100 111123333
Q ss_pred EecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccc--cccccccccCCCCCCCCcEEE
Q 039535 80 VVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWER--LDLTKVGVPLPGPKNTTSKVV 157 (769)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~~~~~l~~~~~~~~~ii 157 (769)
+.....+..+ .+++...... .-..+++-++|+|+++.. .....+...+. .....+.+|
T Consensus 91 daas~~~vdd-IR~Iie~~~~------------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LE-ePp~~v~fI 150 (491)
T PRK14964 91 DAASNTSVDD-IKVILENSCY------------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLE-EPAPHVKFI 150 (491)
T ss_pred ecccCCCHHH-HHHHHHHHHh------------------ccccCCceEEEEeChHhCCHHHHHHHHHHHh-CCCCCeEEE
Confidence 3322222211 1112111110 001345668999999643 22334444444 333456666
Q ss_pred EEcCc-hhhhc-ccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 158 FTTRF-FDVCG-SMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 158 ittr~-~~~~~-~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
++|.. ..+.. -......+++.+++.++..+.+.+.+...+...+ ++.++.|++.++|.+..+....
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~---~eAL~lIa~~s~GslR~alslL 218 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD---EESLKLIAENSSGSMRNALFLL 218 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 65543 33322 2234577999999999999999998876653333 3567789999999886544443
No 69
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.70 E-value=1.7e-07 Score=101.84 Aligned_cols=197 Identities=14% Similarity=0.115 Sum_probs=107.5
Q ss_pred CCccccchHHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 039535 19 TERTLVGLQSQLEQVWRCLIEES-AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKR 97 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 97 (769)
.-++++|++..++.+..++..++ .+.+.++||+|+||||+|+.+++.+. -........ + +.-...+.+...
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~-C~~~~~~~~---C----g~C~sCr~i~~~ 85 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN-CLNPKDGDC---C----NSCSVCESINTN 85 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CCCCCCCCC---C----cccHHHHHHHcC
Confidence 34678999999999999997654 44688999999999999999999872 111000000 0 000011111100
Q ss_pred cCCC---CCCCCCccHHH---HHHHHHHH-hccceEEEEEcccccc--cccccccccCCCCCCCCcEEEEEc-Cchhhhc
Q 039535 98 IGLV---DDSWKSKSVEE---KALDIFRS-LREKRIVLLLDDIWER--LDLTKVGVPLPGPKNTTSKVVFTT-RFFDVCG 167 (769)
Q Consensus 98 l~~~---~~~~~~~~~~~---~~~~l~~~-l~~~~~llvlDd~~~~--~~~~~~~~~l~~~~~~~~~iiitt-r~~~~~~ 167 (769)
.... .........++ ....+... ..+++-++|+|+++.. .....+...+. .....+.+|++| ....+..
T Consensus 86 ~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLE-EPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 86 QSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLE-EPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHH-hCCCcEEEEEECCChHhhhH
Confidence 0000 00000111121 11111110 1223446999999653 22334443333 222345555544 4333322
Q ss_pred c-cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHH
Q 039535 168 S-MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGR 227 (769)
Q Consensus 168 ~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 227 (769)
. ......+++.+++.++....+.+.+...+...+ .+.+..+++.++|.+..+.....
T Consensus 165 TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 165 TIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 2 234568999999999999999988765442233 34577889999997754444433
No 70
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=4e-07 Score=94.29 Aligned_cols=176 Identities=13% Similarity=0.180 Sum_probs=110.5
Q ss_pred ccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhhh---ccCCCCEEEEEEecC-CCCHHHHHHHHH
Q 039535 21 RTLVGLQSQLEQVWRCLIEESA-GIIGLYGMGGVGKTTLLIHINNKFLE---SRTNFDFVIWVVVSK-DPRLEKIQEDIG 95 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~---~~~~~~~~~w~~~~~-~~~~~~~~~~l~ 95 (769)
.+++|.+..++.+..++.+++. ++..++|+.|+|||++|+.+++.+-- ...+++...|..... .....+ .+++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 4679999999999999987654 46689999999999999999987621 123445444433111 111222 22222
Q ss_pred HHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEccccc--ccccccccccCCCCCCCCcEEEEEcCchhh-hcc-cCC
Q 039535 96 KRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWE--RLDLTKVGVPLPGPKNTTSKVVFTTRFFDV-CGS-MEA 171 (769)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~--~~~~~~~~~~l~~~~~~~~~iiittr~~~~-~~~-~~~ 171 (769)
+.+... ...+++-++|+|+++. ...+..+...+. ....++.+|++|.+.+. ... ...
T Consensus 83 ~~~~~~------------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LE-epp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 83 EEVNKK------------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIE-EPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHHhcC------------------cccCCceEEEEechhhcCHHHHHHHHHHhc-CCCCCeEEEEEeCChHhCcHHHHhh
Confidence 222111 1134555777777753 334555555555 44567788877765542 221 234
Q ss_pred CceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHH
Q 039535 172 HRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALV 223 (769)
Q Consensus 172 ~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 223 (769)
.+.+++.++++++...++.+..... . .+.+..++..++|.|..+.
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~~~----~---~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYNDI----K---EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhcCC----C---HHHHHHHHHHcCCCHHHHH
Confidence 5789999999999999998765311 1 2346678889999887543
No 71
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=2.1e-07 Score=100.90 Aligned_cols=196 Identities=14% Similarity=0.125 Sum_probs=110.0
Q ss_pred ccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhhhhccCC-CCEEEEEEecCCCCHHHHHHHHHH--
Q 039535 21 RTLVGLQSQLEQVWRCLIEESAG-IIGLYGMGGVGKTTLLIHINNKFLESRTN-FDFVIWVVVSKDPRLEKIQEDIGK-- 96 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~~~~~l~~-- 96 (769)
+++||.+..++.|..++..++.. .+.++|+.|+||||+|+.+++.+--.... ......-.++ .-..-+.+..
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG----~C~sC~~I~aG~ 91 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG----QCRACTEIDAGR 91 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc----ccHHHHHHHcCC
Confidence 56899999999999999877654 56899999999999999999988210000 0000000000 0000011100
Q ss_pred ---HcCCCCCCCCCccHHHH---HHHHHHH-hccceEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCc-hhhh
Q 039535 97 ---RIGLVDDSWKSKSVEEK---ALDIFRS-LREKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVFTTRF-FDVC 166 (769)
Q Consensus 97 ---~l~~~~~~~~~~~~~~~---~~~l~~~-l~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iiittr~-~~~~ 166 (769)
.+.... .....+++. ++.+... ..++.-++|+|+++... ....+...+. ....++.+|++|.+ ..+.
T Consensus 92 hpDviEIdA--as~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLE-EPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 92 FVDYIEMDA--ASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE-EPPEHVKFILATTDPQKIP 168 (700)
T ss_pred CCcceEecc--cccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhc-cCCCCceEEEEeCChHhhh
Confidence 000000 011122222 2211111 14556799999997542 2333333333 22345566665554 3332
Q ss_pred cc-cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 167 GS-MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 167 ~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
.. ......+.+..++.++..+.+.+.+...+...+ .+..+.|++.++|.|.....+.
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d---~eAL~~IA~~A~Gs~RdALsLL 226 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE---VNALRLLAQAAQGSMRDALSLT 226 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 22 233567999999999999999988765443332 3456788999999997555443
No 72
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.70 E-value=7.6e-09 Score=98.54 Aligned_cols=76 Identities=16% Similarity=0.202 Sum_probs=55.7
Q ss_pred eeeeeccccccCCCccccccceEeecCcccccccccccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCccc
Q 039535 610 KIDYTEIAQKRREPFVFRSLRRVTMVSCHKLKDLTFLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQ 689 (769)
Q Consensus 610 ~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 689 (769)
|+++|.++....+.-.+.|++.|.|.+| .+++++.+..+-+|+.|++++| +++.+ +...+++++|+|+
T Consensus 335 DLS~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~N-~Ie~l----------deV~~IG~LPCLE 402 (490)
T KOG1259|consen 335 DLSGNLLAECVGWHLKLGNIKTLKLAQN-KIETLSGLRKLYSLVNLDLSSN-QIEEL----------DEVNHIGNLPCLE 402 (490)
T ss_pred ecccchhHhhhhhHhhhcCEeeeehhhh-hHhhhhhhHhhhhheecccccc-chhhH----------HHhcccccccHHH
Confidence 3333433333333346889999999999 6899999999999999999986 34443 3445788999999
Q ss_pred cccccccc
Q 039535 690 NLDLSYLL 697 (769)
Q Consensus 690 ~L~l~~c~ 697 (769)
+|.|.+++
T Consensus 403 ~l~L~~NP 410 (490)
T KOG1259|consen 403 TLRLTGNP 410 (490)
T ss_pred HHhhcCCC
Confidence 99999854
No 73
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=5e-07 Score=94.22 Aligned_cols=197 Identities=11% Similarity=0.039 Sum_probs=110.8
Q ss_pred CccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEE---EEecCCCCHHHHHHHHH
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESAG-IIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIW---VVVSKDPRLEKIQEDIG 95 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w---~~~~~~~~~~~~~~~l~ 95 (769)
..++||.+...+.+.+.+..++.+ .+.++|+.|+||+++|..+++.+--.........- .+... .+.-..-+.+.
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~-~~~c~~c~~i~ 96 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI-DPDHPVARRIA 96 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC-CCCChHHHHHH
Confidence 367899999999999999877654 58899999999999999999887211100000000 00000 00000111111
Q ss_pred HHc-------CCCCCC-----CCCccHHHHHHHHHHHh-----ccceEEEEEccccccc--ccccccccCCCCCCCCcEE
Q 039535 96 KRI-------GLVDDS-----WKSKSVEEKALDIFRSL-----REKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKV 156 (769)
Q Consensus 96 ~~l-------~~~~~~-----~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~i 156 (769)
..- .....+ .....+++ ++.+.+.+ .+.+.++|+|+++... ....+...+. ....++.+
T Consensus 97 ~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LE-epp~~~~~ 174 (365)
T PRK07471 97 AGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLE-EPPARSLF 174 (365)
T ss_pred ccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHh-cCCCCeEE
Confidence 000 000000 01122333 44445544 3466799999996432 2223332232 22335566
Q ss_pred EEEcCchh-hhcc-cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 157 VFTTRFFD-VCGS-MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 157 iittr~~~-~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
|++|.+.. +... ......+.+.+++.+++.+++.+...... .+....++..++|.|.....+.
T Consensus 175 IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 175 LLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHHh
Confidence 66666543 3222 23467899999999999999988653211 1223678899999998665543
No 74
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=4.6e-07 Score=97.65 Aligned_cols=187 Identities=20% Similarity=0.203 Sum_probs=108.1
Q ss_pred CCccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhhhccCC------------------CCEEEEE
Q 039535 19 TERTLVGLQSQLEQVWRCLIEESA-GIIGLYGMGGVGKTTLLIHINNKFLESRTN------------------FDFVIWV 79 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~------------------~~~~~w~ 79 (769)
.-+++||.+...+.+...+..++. ..+.++||+|+||||+|+.+++.+...... ...+..+
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el 91 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIEL 91 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEE
Confidence 346789999998988888876665 457899999999999999999887211000 0012222
Q ss_pred EecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccc--cccccccccCCCCCCCCcEEE
Q 039535 80 VVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWER--LDLTKVGVPLPGPKNTTSKVV 157 (769)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~~~~~l~~~~~~~~~ii 157 (769)
+.....+... .+.+...... ....+++-++|+|+++.. .....+...+. .......+|
T Consensus 92 ~aa~~~gid~-iR~i~~~~~~------------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE-~p~~~vv~I 151 (472)
T PRK14962 92 DAASNRGIDE-IRKIRDAVGY------------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLE-EPPSHVVFV 151 (472)
T ss_pred eCcccCCHHH-HHHHHHHHhh------------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHH-hCCCcEEEE
Confidence 2211111111 1111111100 012345679999999643 23344444443 222344444
Q ss_pred EEcCc-hhhhcc-cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCC-cchHHHHHHHH
Q 039535 158 FTTRF-FDVCGS-MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGG-LPLALVTIGRA 228 (769)
Q Consensus 158 ittr~-~~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~~~~~ 228 (769)
++|.+ ..+... ......+++.+++.++....+.+.+...+...+ ++....|++.++| .+.++..+-..
T Consensus 152 lattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~---~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 152 LATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID---REALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred EEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 44433 323221 234568999999999999999988765443333 3556778887755 56666666543
No 75
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.68 E-value=1.3e-07 Score=93.16 Aligned_cols=173 Identities=12% Similarity=0.060 Sum_probs=100.2
Q ss_pred Ccccc-chHHHH-HHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHH
Q 039535 20 ERTLV-GLQSQL-EQVWRCLIE-ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGK 96 (769)
Q Consensus 20 ~~~~v-gR~~~~-~~l~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 96 (769)
-++|+ |+.+.. ..+.++... ...+.++|+|++|+|||+||+.+++... .....+.+++..... ..+
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~---~~~~~~~~i~~~~~~------~~~-- 85 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS---YGGRNARYLDAASPL------LAF-- 85 (227)
T ss_pred hcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEEehHHhH------HHH--
Confidence 45666 554444 444444332 3456789999999999999999999872 222345555543311 000
Q ss_pred HcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEccccccc--ccccccccCCCCCCCCc-EEEEEcCchhhhc------
Q 039535 97 RIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTS-KVVFTTRFFDVCG------ 167 (769)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~-~iiittr~~~~~~------ 167 (769)
... ...-++|+||++... ....+...+......+. .+++|++......
T Consensus 86 ----------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L 142 (227)
T PRK08903 86 ----------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDL 142 (227)
T ss_pred ----------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHH
Confidence 011 123478899996432 11222222221111233 4666666433211
Q ss_pred --ccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHh
Q 039535 168 --SMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAM 229 (769)
Q Consensus 168 --~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 229 (769)
.+.....++++++++++...++.+.........+ ++..+.+++...|++..+..+...+
T Consensus 143 ~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 143 RTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2223468999999999888888776544332333 4667788888999998877776655
No 76
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.68 E-value=6.1e-07 Score=95.39 Aligned_cols=186 Identities=13% Similarity=0.152 Sum_probs=111.3
Q ss_pred CCccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhhhccC-------------------CCCEEEE
Q 039535 19 TERTLVGLQSQLEQVWRCLIEESA-GIIGLYGMGGVGKTTLLIHINNKFLESRT-------------------NFDFVIW 78 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------~~~~~~w 78 (769)
.-.++||.+..++.+.+++..++. +.+.++|++|+|||++|+.+++.+..... +++ +.+
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~~ 90 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VIE 90 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEE
Confidence 346789999999999999976654 46789999999999999999988721100 111 222
Q ss_pred EEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccc--cccccccccCCCCCCCCcEE
Q 039535 79 VVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWER--LDLTKVGVPLPGPKNTTSKV 156 (769)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~~~~~l~~~~~~~~~i 156 (769)
++........ ..+.+...+... ...+++-++|+|+++.. .....+...+. .....+.+
T Consensus 91 ~~~~~~~~~~-~~~~l~~~~~~~------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le-~~~~~~~l 150 (355)
T TIGR02397 91 IDAASNNGVD-DIREILDNVKYA------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLE-EPPEHVVF 150 (355)
T ss_pred eeccccCCHH-HHHHHHHHHhcC------------------cccCCceEEEEeChhhcCHHHHHHHHHHHh-CCccceeE
Confidence 2221111111 111122111100 01234558899998643 22333433443 23345566
Q ss_pred EEEcCchh-hhcc-cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHH
Q 039535 157 VFTTRFFD-VCGS-MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRA 228 (769)
Q Consensus 157 iittr~~~-~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 228 (769)
|++|.+.. +... ......+++.+++.++..+++...+...+...+ ++.+..+++.++|.|..+......
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~lek 221 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSLLDQ 221 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHHHHH
Confidence 66665443 2221 223467899999999999999987765442233 356778899999998766555433
No 77
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.67 E-value=7.7e-09 Score=98.50 Aligned_cols=130 Identities=18% Similarity=0.187 Sum_probs=99.3
Q ss_pred ccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcC
Q 039535 425 QFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRV 504 (769)
Q Consensus 425 ~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L 504 (769)
...+.|..+++|+| .+..+..++.-.++++.|++++|+|+++.+ +..+++|+.||+++|. +..+.-. -.++.+.
T Consensus 281 dTWq~LtelDLS~N---~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gw-h~KLGNI 354 (490)
T KOG1259|consen 281 DTWQELTELDLSGN---LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGW-HLKLGNI 354 (490)
T ss_pred chHhhhhhcccccc---chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhh-HhhhcCE
Confidence 34677888999998 777787888888899999999999887754 7888999999999986 5555432 4478889
Q ss_pred cEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCcccc
Q 039535 505 RVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFI 584 (769)
Q Consensus 505 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~ 584 (769)
+.|.+..|.+. ....++++=+|..|++..+++..+....
T Consensus 355 KtL~La~N~iE-----------------~LSGL~KLYSLvnLDl~~N~Ie~ldeV~------------------------ 393 (490)
T KOG1259|consen 355 KTLKLAQNKIE-----------------TLSGLRKLYSLVNLDLSSNQIEELDEVN------------------------ 393 (490)
T ss_pred eeeehhhhhHh-----------------hhhhhHhhhhheeccccccchhhHHHhc------------------------
Confidence 99999988766 4556777788888888888777665542
Q ss_pred ccccccccccccceeecccc
Q 039535 585 DATAFADLKHLNELQIHDCR 604 (769)
Q Consensus 585 ~~~~l~~~~~L~~L~l~~~~ 604 (769)
.+++++.|+.+.+.+++
T Consensus 394 ---~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 394 ---HIGNLPCLETLRLTGNP 410 (490)
T ss_pred ---ccccccHHHHHhhcCCC
Confidence 56677777777766653
No 78
>PRK09087 hypothetical protein; Validated
Probab=98.66 E-value=1.9e-07 Score=90.91 Aligned_cols=166 Identities=16% Similarity=0.113 Sum_probs=96.7
Q ss_pred Ccccc--chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 039535 20 ERTLV--GLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKR 97 (769)
Q Consensus 20 ~~~~v--gR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 97 (769)
.++|| +.....-.+.+.+.....+.++|+|++|+|||+|++.++... ...+++.. .+..++...
T Consensus 20 ~~~Fi~~~~N~~a~~~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~~~~--------~~~~i~~~------~~~~~~~~~ 85 (226)
T PRK09087 20 RDDLLVTESNRAAVSLVDHWPNWPSPVVVLAGPVGSGKTHLASIWREKS--------DALLIHPN------EIGSDAANA 85 (226)
T ss_pred hhceeecCchHHHHHHHHhcccCCCCeEEEECCCCCCHHHHHHHHHHhc--------CCEEecHH------HcchHHHHh
Confidence 35565 334433333333222234568999999999999999888765 11243321 111111111
Q ss_pred cCCCCCCCCCccHHHHHHHHHHHhccceEEEEEccccccc-ccccccccCCCCCCCCcEEEEEcCc---------hhhhc
Q 039535 98 IGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERL-DLTKVGVPLPGPKNTTSKVVFTTRF---------FDVCG 167 (769)
Q Consensus 98 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~-~~~~~~~~l~~~~~~~~~iiittr~---------~~~~~ 167 (769)
+ .+ -++++||++... .-+.+...+......|..+|+|++. +++.+
T Consensus 86 ~-----------------------~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S 140 (226)
T PRK09087 86 A-----------------------AE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS 140 (226)
T ss_pred h-----------------------hc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH
Confidence 1 11 278889995421 1122222222122335678887763 22344
Q ss_pred ccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHH
Q 039535 168 SMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGR 227 (769)
Q Consensus 168 ~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 227 (769)
.+.....+++.+++.++..+++.+.+.......+ ++..+.|++.+.|....+..+..
T Consensus 141 Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 141 RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVD---PHVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHHHHH
Confidence 4456678999999999999999999876543333 46677888888877766654433
No 79
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.66 E-value=2e-07 Score=90.45 Aligned_cols=162 Identities=17% Similarity=0.158 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLR 122 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 122 (769)
..+.|+|++|+|||.|+++++++..+ ......+++++ ..++...+...+... . ...+.+.++
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~-~~~~~~v~y~~------~~~f~~~~~~~~~~~-------~----~~~~~~~~~ 96 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQK-QHPGKRVVYLS------AEEFIREFADALRDG-------E----IEEFKDRLR 96 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH-HCTTS-EEEEE------HHHHHHHHHHHHHTT-------S----HHHHHHHHC
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh-ccccccceeec------HHHHHHHHHHHHHcc-------c----chhhhhhhh
Confidence 46899999999999999999999833 22334577774 455555555554321 1 223334443
Q ss_pred cceEEEEEcccccccc---cc-cccccCCCCCCCCcEEEEEcCchh---------hhcccCCCceEEeecCCHHHHHHHH
Q 039535 123 EKRIVLLLDDIWERLD---LT-KVGVPLPGPKNTTSKVVFTTRFFD---------VCGSMEAHRTFEVACLSEKDAWELF 189 (769)
Q Consensus 123 ~~~~llvlDd~~~~~~---~~-~~~~~l~~~~~~~~~iiittr~~~---------~~~~~~~~~~~~l~~l~~~e~~~l~ 189 (769)
+- =++++||++.... +. .+...+......|..+|+|++..+ +.+.+...-.+++.+.+.++..+++
T Consensus 97 ~~-DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il 175 (219)
T PF00308_consen 97 SA-DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRIL 175 (219)
T ss_dssp TS-SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHH
T ss_pred cC-CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHH
Confidence 32 3788999965321 11 111111111134567888885432 2333445678999999999999999
Q ss_pred HHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 190 QEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
.+.+...+...+ ++.++.|++.+.+....+..+.
T Consensus 176 ~~~a~~~~~~l~---~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 176 QKKAKERGIELP---EEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp HHHHHHTT--S----HHHHHHHHHHTTSSHHHHHHHH
T ss_pred HHHHHHhCCCCc---HHHHHHHHHhhcCCHHHHHHHH
Confidence 999877664433 4666677777766555544443
No 80
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.65 E-value=8e-07 Score=96.13 Aligned_cols=196 Identities=18% Similarity=0.175 Sum_probs=109.8
Q ss_pred ccccchHHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCC-EEEEEEecCCCCHHHHHHHHHHHc
Q 039535 21 RTLVGLQSQLEQVWRCLIEES-AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFD-FVIWVVVSKDPRLEKIQEDIGKRI 98 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~l~~~l 98 (769)
.++||.+..++.+...+..++ .+.+.++|++|+||||+|+.+++.+- ...... ..-+..+... ..-..+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln-c~~~~~~~~~~~~C~~C----~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN-CSALITENTTIKTCEQC----TNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CccccccCcCcCCCCCC----hHHHHHhcCC
Confidence 567999999999998887655 35788999999999999999999872 111000 0000000000 0000000000
Q ss_pred CCC---CCCCCCccHHHHHHHHHH----HhccceEEEEEcccccc--cccccccccCCCCCCCCcEEEEEc-Cchhhhcc
Q 039535 99 GLV---DDSWKSKSVEEKALDIFR----SLREKRIVLLLDDIWER--LDLTKVGVPLPGPKNTTSKVVFTT-RFFDVCGS 168 (769)
Q Consensus 99 ~~~---~~~~~~~~~~~~~~~l~~----~l~~~~~llvlDd~~~~--~~~~~~~~~l~~~~~~~~~iiitt-r~~~~~~~ 168 (769)
... -+......+++....+.. -..+++-++|+|+++.. ..+..+...+. .....+.+|++| +...+...
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LE-epp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLE-EPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHh-hcCCCEEEEEEeCChHHhhHH
Confidence 000 000011122222111111 12456678999999753 33444544444 333455555544 43333322
Q ss_pred -cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHH
Q 039535 169 -MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTI 225 (769)
Q Consensus 169 -~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 225 (769)
......+++.+++.++..+++.+.+...+...+ .+....|++.++|.+..+...
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie---~eAL~~Ia~~s~GslR~al~~ 229 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD---IEALRIIAYKSEGSARDAVSI 229 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 234467999999999999999998876553333 355678899999977654443
No 81
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.65 E-value=2.9e-07 Score=101.05 Aligned_cols=182 Identities=14% Similarity=0.139 Sum_probs=109.1
Q ss_pred CccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhhhccCC-------------------CCEEEEE
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESA-GIIGLYGMGGVGKTTLLIHINNKFLESRTN-------------------FDFVIWV 79 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~-------------------~~~~~w~ 79 (769)
-.++||.+..++.|..++..++. ..+.++|+.|+||||+|+.+++.+ .-... +..++.+
T Consensus 15 FddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~L-nC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSL-NCENAQHGEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh-cccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence 36789999999999999987664 467999999999999999999986 11110 0011111
Q ss_pred EecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHH-HhccceEEEEEcccccccc--cccccccCCCCCCCCcEE
Q 039535 80 VVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFR-SLREKRIVLLLDDIWERLD--LTKVGVPLPGPKNTTSKV 156 (769)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~llvlDd~~~~~~--~~~~~~~l~~~~~~~~~i 156 (769)
+......+ ..+.+++..... -..+++-++|+|+++.... ...+...+. .....+.+
T Consensus 94 daAs~~gV--------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLE-EPp~~v~f 152 (709)
T PRK08691 94 DAASNTGI--------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLE-EPPEHVKF 152 (709)
T ss_pred eccccCCH--------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHH-hCCCCcEE
Confidence 11111010 111112211111 1134567899999965332 223333332 22235566
Q ss_pred EEEcCchh-hh-cccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 157 VFTTRFFD-VC-GSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 157 iittr~~~-~~-~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
|++|.+.. +. ...+....+.+.+++.++..+.+.+.+...+...+ .+.+..|++.++|.+.-+..+.
T Consensus 153 ILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id---~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 153 ILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE---PPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred EEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHhCCCHHHHHHHH
Confidence 66665432 21 11233456889999999999999998876553333 3567789999999886555544
No 82
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.64 E-value=9.9e-07 Score=99.69 Aligned_cols=175 Identities=21% Similarity=0.249 Sum_probs=100.1
Q ss_pred CccccchHHHHH---HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHH
Q 039535 20 ERTLVGLQSQLE---QVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGK 96 (769)
Q Consensus 20 ~~~~vgR~~~~~---~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 96 (769)
-++|||++..+. .+...+..+....+.|+|++|+||||+|+.+++.. ...|. .++... ...
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~---~lna~~-~~i--------- 90 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFS---SLNAVL-AGV--------- 90 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCcce---eehhhh-hhh---------
Confidence 367899999885 46666666677788999999999999999999886 22221 111100 000
Q ss_pred HcCCCCCCCCCccHHHHHHHHHHHh--ccceEEEEEcccccc--cccccccccCCCCCCCCcEEEE--EcCchh--hh-c
Q 039535 97 RIGLVDDSWKSKSVEEKALDIFRSL--REKRIVLLLDDIWER--LDLTKVGVPLPGPKNTTSKVVF--TTRFFD--VC-G 167 (769)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~~~~llvlDd~~~~--~~~~~~~~~l~~~~~~~~~iii--ttr~~~--~~-~ 167 (769)
.+..+.+....+.+ .+++.++|+||++.. ...+.+...+. .+..+++ ||.++. +. .
T Consensus 91 -----------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE----~g~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 91 -----------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE----NGTITLIGATTENPYFEVNKA 155 (725)
T ss_pred -----------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc----CceEEEEEecCCChHhhhhhH
Confidence 01112222222222 245679999999643 22333333222 2344444 333321 11 1
Q ss_pred ccCCCceEEeecCCHHHHHHHHHHHhcccc----CCCchhHHHHHHHHHHHhCCcchHHHHH
Q 039535 168 SMEAHRTFEVACLSEKDAWELFQEKVGEET----LKSDHDIAELAQTVAKKCGGLPLALVTI 225 (769)
Q Consensus 168 ~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~----~~~~~~~~~~~~~i~~~~~G~Plai~~~ 225 (769)
.......+.+++++.++...++.+.+.... .......++..+.|++.+.|....+..+
T Consensus 156 L~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~ 217 (725)
T PRK13341 156 LVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNA 217 (725)
T ss_pred hhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 112345799999999999999988765100 0011222456678888888875543333
No 83
>PRK05642 DNA replication initiation factor; Validated
Probab=98.64 E-value=4e-07 Score=89.52 Aligned_cols=176 Identities=15% Similarity=0.201 Sum_probs=99.5
Q ss_pred cccc-chHHHHHHHHHHhhcC----CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHH
Q 039535 21 RTLV-GLQSQLEQVWRCLIEE----SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIG 95 (769)
Q Consensus 21 ~~~v-gR~~~~~~l~~~l~~~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 95 (769)
++|+ |......+..+.+..+ ....++|+|++|+|||+|++++++... .....++|++... +...
T Consensus 19 dnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~---~~~~~v~y~~~~~------~~~~-- 87 (234)
T PRK05642 19 ANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFE---QRGEPAVYLPLAE------LLDR-- 87 (234)
T ss_pred cccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEeeHHH------HHhh--
Confidence 4454 6555444444333111 135788999999999999999998872 2234567776422 1110
Q ss_pred HHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccc---ccccc-ccccCCCCCCCCcEEEEEcCchh-h-----
Q 039535 96 KRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWER---LDLTK-VGVPLPGPKNTTSKVVFTTRFFD-V----- 165 (769)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~---~~~~~-~~~~l~~~~~~~~~iiittr~~~-~----- 165 (769)
...+.+.+.+-. ++|+||++.. ..+.. +...+......+..+|+|++... .
T Consensus 88 ------------------~~~~~~~~~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~ 148 (234)
T PRK05642 88 ------------------GPELLDNLEQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKL 148 (234)
T ss_pred ------------------hHHHHHhhhhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccC
Confidence 012222332222 6788999632 12221 22222211233566888776432 1
Q ss_pred ---hcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHh
Q 039535 166 ---CGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAM 229 (769)
Q Consensus 166 ---~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 229 (769)
.+++.....+++.+++.++..+++.+.+.......+ ++..+.|++.+.|....+..+...+
T Consensus 149 ~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 149 PDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred ccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 222334467899999999999999966644332222 4667778887776665554444333
No 84
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=5.3e-07 Score=94.80 Aligned_cols=172 Identities=15% Similarity=0.096 Sum_probs=103.0
Q ss_pred ccccchHHHHHHHHHHhhcCC----------ceEEEEEcCCCCcHHHHHHHHHhhhhhcc------------------CC
Q 039535 21 RTLVGLQSQLEQVWRCLIEES----------AGIIGLYGMGGVGKTTLLIHINNKFLESR------------------TN 72 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~----------~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------------------~~ 72 (769)
++++|.+..++.+..++..+. .+.+.++||+|+|||++|+.+++.+--.. .+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 468999999999999997643 45688999999999999999988761100 01
Q ss_pred CCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-----ccceEEEEEccccccc--cccccccc
Q 039535 73 FDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-----REKRIVLLLDDIWERL--DLTKVGVP 145 (769)
Q Consensus 73 ~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~~--~~~~~~~~ 145 (769)
++ +.++.... ....+++ ++.+.+.. .+++-++|+|+++... ....+...
T Consensus 85 pD-~~~i~~~~----------------------~~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~ 140 (394)
T PRK07940 85 PD-VRVVAPEG----------------------LSIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKA 140 (394)
T ss_pred CC-EEEecccc----------------------ccCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHH
Confidence 11 11111100 1112222 22222322 3455588889997532 22223323
Q ss_pred CCCCCCCCcEEEEEcCch-hhhcc-cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHH
Q 039535 146 LPGPKNTTSKVVFTTRFF-DVCGS-MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALV 223 (769)
Q Consensus 146 l~~~~~~~~~iiittr~~-~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 223 (769)
+. ....++.+|++|.+. .+... ......+.+.+++.++..+++.+..+. . .+.+..++..++|.|....
T Consensus 141 LE-ep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~-----~---~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 141 VE-EPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV-----D---PETARRAARASQGHIGRAR 211 (394)
T ss_pred hh-cCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC-----C---HHHHHHHHHHcCCCHHHHH
Confidence 33 223355555555543 33322 234578999999999999998754321 1 2456788999999997554
Q ss_pred HH
Q 039535 224 TI 225 (769)
Q Consensus 224 ~~ 225 (769)
.+
T Consensus 212 ~l 213 (394)
T PRK07940 212 RL 213 (394)
T ss_pred HH
Confidence 33
No 85
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.64 E-value=5.8e-08 Score=86.63 Aligned_cols=117 Identities=23% Similarity=0.267 Sum_probs=80.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhcc--CCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESR--TNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIF 118 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 118 (769)
+.+.++|+|++|+|||+++.++++...... .....++|+.+....+...+.+.++..++..... ..+..+..+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 356899999999999999999999873211 1145678999888889999999999999876542 456777778888
Q ss_pred HHhccce-EEEEEcccccc-c--ccccccccCCCCCCCCcEEEEEcCc
Q 039535 119 RSLREKR-IVLLLDDIWER-L--DLTKVGVPLPGPKNTTSKVVFTTRF 162 (769)
Q Consensus 119 ~~l~~~~-~llvlDd~~~~-~--~~~~~~~~l~~~~~~~~~iiittr~ 162 (769)
+.+...+ .+||+||++.. . .++.+..... ..+..||++.++
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~---~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN---ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC---SCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh---CCCCeEEEEECh
Confidence 8886654 59999999764 2 1222222221 456677777664
No 86
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.63 E-value=1.1e-07 Score=90.68 Aligned_cols=47 Identities=30% Similarity=0.403 Sum_probs=33.7
Q ss_pred cccchHHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHhhhhh
Q 039535 22 TLVGLQSQLEQVWRCLIE---ESAGIIGLYGMGGVGKTTLLIHINNKFLE 68 (769)
Q Consensus 22 ~~vgR~~~~~~l~~~l~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 68 (769)
.||||+++++++...+.. +..+.++|+|++|+|||+|+++++..+.+
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 489999999999999932 45678999999999999999999999843
No 87
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2e-09 Score=102.46 Aligned_cols=186 Identities=20% Similarity=0.192 Sum_probs=128.6
Q ss_pred CcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCC-ccchhhhcCCCCceeeccCCCcccccc-hHHhcCCCcCc
Q 039535 428 PSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIE-ELPEELKLLVNLKCLNLRWTDVLNKIP-RQLISNLSRVR 505 (769)
Q Consensus 428 ~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~lp-~~~~~~l~~L~ 505 (769)
..||++||++..+ ....+...+..|.+|+.|.+.++.+. .+...+..-.+|+.|+++.|..++... ..++.+|+.|.
T Consensus 185 sRlq~lDLS~s~i-t~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVI-TVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhhe-eHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 5699999999732 22345566788999999999999988 566678888999999999998776543 33478999999
Q ss_pred EEEeeccCCCccccccccccccCCccchhhhhhc-CCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCcccc
Q 039535 506 VLRMFATGYDRFHEASEDSVLFGGGEVLIQELLG-LKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFI 584 (769)
Q Consensus 506 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~ 584 (769)
.|+++.|.... +..--.+.+ -++|..|.++++.-.-.. + .+.
T Consensus 264 ~LNlsWc~l~~--------------~~Vtv~V~hise~l~~LNlsG~rrnl~~-----s----h~~-------------- 306 (419)
T KOG2120|consen 264 ELNLSWCFLFT--------------EKVTVAVAHISETLTQLNLSGYRRNLQK-----S----HLS-------------- 306 (419)
T ss_pred hcCchHhhccc--------------hhhhHHHhhhchhhhhhhhhhhHhhhhh-----h----HHH--------------
Confidence 99999998874 222222222 245666666644311100 0 000
Q ss_pred ccccccccccccceeeccccCcceEeeeeeccccccCCCccccccceEeecCcccccc--cccccccCCccEEeecCChh
Q 039535 585 DATAFADLKHLNELQIHDCRGLEELKIDYTEIAQKRREPFVFRSLRRVTMVSCHKLKD--LTFLVFAPNLKSISLGDCDA 662 (769)
Q Consensus 585 ~~~~l~~~~~L~~L~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~--l~~l~~l~~L~~L~l~~~~~ 662 (769)
....+|++|..|++++|..++. + -.. ....|+.|++|.++.|..+-. +-.+...|+|.+|++-+|-.
T Consensus 307 --tL~~rcp~l~~LDLSD~v~l~~-~-~~~-------~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 307 --TLVRRCPNLVHLDLSDSVMLKN-D-CFQ-------EFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred --HHHHhCCceeeeccccccccCc-h-HHH-------HHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 1346788899999998877763 1 111 124689999999999975443 22366789999999998843
No 88
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.62 E-value=4.7e-07 Score=100.05 Aligned_cols=195 Identities=15% Similarity=0.101 Sum_probs=109.8
Q ss_pred CccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHc
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESAG-IIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRI 98 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l 98 (769)
-.++||.+..++.|...+..++.. .+.++|+.|+||||+|+.+++.+- -...... ..+. .-...+.+...-
T Consensus 15 f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~-c~~~~~~---~pCg----~C~~C~~i~~g~ 86 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLN-CETGITA---TPCG----ECDNCREIEQGR 86 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhh-hccCCCC---CCCC----CCHHHHHHHcCC
Confidence 467899999999999999876654 468999999999999999998872 1110000 0000 001111111000
Q ss_pred CCC---CCCCCCccHHH---HHHHHHHH-hccceEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCc-hhhhcc
Q 039535 99 GLV---DDSWKSKSVEE---KALDIFRS-LREKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVFTTRF-FDVCGS 168 (769)
Q Consensus 99 ~~~---~~~~~~~~~~~---~~~~l~~~-l~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iiittr~-~~~~~~ 168 (769)
... -+......+++ ++..+... ..+++-++|+|+++... ....+...+. .....+++|++|.+ ..+...
T Consensus 87 ~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLE-EPp~~v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 87 FVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE-EPPEHVKFLLATTDPQKLPVT 165 (647)
T ss_pred CCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHH-cCCCCeEEEEecCCccccchH
Confidence 000 00000112222 22221111 24566799999997432 2333322232 22335556555554 333222
Q ss_pred -cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 169 -MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 169 -~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
......+++.+++.++..+.+.+.+.......+ ++....|++.++|.+..+..+.
T Consensus 166 I~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e---~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 166 ILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE---PRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred HHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 234578999999999999999987754432222 3556789999999887554444
No 89
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=7.3e-07 Score=98.34 Aligned_cols=196 Identities=14% Similarity=0.142 Sum_probs=109.3
Q ss_pred CccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhhhccCCC--CEEEEEEecCCCCHHHHHHHHHH
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESA-GIIGLYGMGGVGKTTLLIHINNKFLESRTNF--DFVIWVVVSKDPRLEKIQEDIGK 96 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~--~~~~w~~~~~~~~~~~~~~~l~~ 96 (769)
-+++||.+..++.|..++..++. ..+.++|+.|+||||+|+.+++.+ .-.... ...-.-.+ +.-..-+.+..
T Consensus 15 f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~L-nC~~~~~~~~~~~~pC----g~C~~C~~i~~ 89 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSL-NCQGPDGQGGITATPC----GVCQACRDIDS 89 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-cCCCcccccCCCCCCC----CccHHHHHHHc
Confidence 36789999999999999987665 456899999999999999998887 110000 00000000 00001111100
Q ss_pred HcCC---CCCCCCCccHHHHHHHHHHHh-----ccceEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCc-hhh
Q 039535 97 RIGL---VDDSWKSKSVEEKALDIFRSL-----REKRIVLLLDDIWER--LDLTKVGVPLPGPKNTTSKVVFTTRF-FDV 165 (769)
Q Consensus 97 ~l~~---~~~~~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~--~~~~~~~~~l~~~~~~~~~iiittr~-~~~ 165 (769)
.-.. ..+......+++. +.+.+.. .++.-++|+|+++.. .....+...+. .....+.+|++|.+ ..+
T Consensus 90 g~h~D~~eldaas~~~Vd~i-Reli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLE-EPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 90 GRFVDYTELDAASNRGVDEV-QQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLE-EPPEYLKFVLATTDPQKV 167 (618)
T ss_pred CCCCceeecCcccccCHHHH-HHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcc-cCCCCeEEEEEECCchhh
Confidence 0000 0000011122222 1222221 334558999999753 22333433333 22345566655543 222
Q ss_pred h-cccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHH
Q 039535 166 C-GSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTI 225 (769)
Q Consensus 166 ~-~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 225 (769)
. +.......+++.+++.++..+.+.+.+...+...+ .+....|++.++|.+..+..+
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie---~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE---PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 2 22334578999999999999999988766553333 355678889999877655444
No 90
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=5.7e-07 Score=98.04 Aligned_cols=183 Identities=15% Similarity=0.153 Sum_probs=109.6
Q ss_pred CccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhhhhccC-------------------CCCEEEEE
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESAG-IIGLYGMGGVGKTTLLIHINNKFLESRT-------------------NFDFVIWV 79 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------~~~~~~w~ 79 (769)
-+++||.+..++.|..++..++.+ .+.++|++|+||||+|+.+++.+ .-.. .+..++.+
T Consensus 15 f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l-~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL-NCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh-cCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 367899999999999999876655 46899999999999999999987 1111 11112223
Q ss_pred EecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccc--cccccccccCCCCCCCCcEEE
Q 039535 80 VVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWER--LDLTKVGVPLPGPKNTTSKVV 157 (769)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~~~~~l~~~~~~~~~ii 157 (769)
+......+.. .+++...+.. ....++.-++|+|+++.. .....+...+. .....+.+|
T Consensus 94 daas~~~v~~-iR~l~~~~~~------------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LE-epp~~~~fI 153 (509)
T PRK14958 94 DAASRTKVED-TRELLDNIPY------------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLE-EPPSHVKFI 153 (509)
T ss_pred cccccCCHHH-HHHHHHHHhh------------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHh-ccCCCeEEE
Confidence 2221111111 1122221110 011345568999999753 22333333333 223456666
Q ss_pred EEcCch-hhhcc-cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 158 FTTRFF-DVCGS-MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 158 ittr~~-~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
++|.+. .+... ......+++.+++.++..+.+...+...+...+ .+....|++.++|.+..+..+.
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~---~~al~~ia~~s~GslR~al~lL 221 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE---NAALDLLARAANGSVRDALSLL 221 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 655443 22211 233467899999999999988888765543333 3456788899999886554444
No 91
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.61 E-value=3.1e-07 Score=83.96 Aligned_cols=124 Identities=23% Similarity=0.142 Sum_probs=73.1
Q ss_pred cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCC
Q 039535 24 VGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDD 103 (769)
Q Consensus 24 vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~ 103 (769)
+||+..+..+...+.....+.+.|+|++|+|||++++.+++... .....++++..................
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 58899999999998765567899999999999999999999983 223456666654432221111111000
Q ss_pred CCCCccHHHHHHHHHHHhccceEEEEEcccccc-----cccccccccCCCC--CCCCcEEEEEcCchh
Q 039535 104 SWKSKSVEEKALDIFRSLREKRIVLLLDDIWER-----LDLTKVGVPLPGP--KNTTSKVVFTTRFFD 164 (769)
Q Consensus 104 ~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-----~~~~~~~~~l~~~--~~~~~~iiittr~~~ 164 (769)
............++.++|+||++.. ..+.......... ...+..+|+|+....
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112222446789999999742 2222222222201 135677888877543
No 92
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=4.9e-07 Score=96.43 Aligned_cols=202 Identities=14% Similarity=0.126 Sum_probs=111.1
Q ss_pred CccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEe-cCCCCHHHHHHHHHHH
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESAG-IIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVV-SKDPRLEKIQEDIGKR 97 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~l~~~ 97 (769)
-.+++|.+..++.|..++.+++.+ .+.++||+|+||||+|+.+++.+. -........|... ...-+.-..-+.+...
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~-c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc-CCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 367899999999999999876654 488999999999999999999882 1110000000000 0000000000111100
Q ss_pred cCCCC---CCCCCccHHHHHHHHHHHh-----ccceEEEEEccccccc--ccccccccCCCCCCCCcEEEEEc-Cchhhh
Q 039535 98 IGLVD---DSWKSKSVEEKALDIFRSL-----REKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVFTT-RFFDVC 166 (769)
Q Consensus 98 l~~~~---~~~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iiitt-r~~~~~ 166 (769)
....- ........++.. .+.+.+ .+.+-++|+|+++... .+..+...+. .....+.+|++| +...+.
T Consensus 94 ~~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LE-ep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 94 TSLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLE-EPPPHAIFIFATTELHKIP 171 (397)
T ss_pred CCCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHh-cCCCCeEEEEEeCChHHhH
Confidence 00000 000111122222 222222 3455688999996542 3444544444 333455555544 433333
Q ss_pred ccc-CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHH
Q 039535 167 GSM-EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGR 227 (769)
Q Consensus 167 ~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 227 (769)
..+ .....+++.+++.++..+++...+.......+ ++.++.+++.++|.+..+.....
T Consensus 172 ~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~---~~al~~l~~~s~g~lr~a~~~L~ 230 (397)
T PRK14955 172 ATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD---ADALQLIGRKAQGSMRDAQSILD 230 (397)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 221 22357899999999999999888754432222 46678999999998865544433
No 93
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=1.1e-06 Score=93.33 Aligned_cols=186 Identities=15% Similarity=0.191 Sum_probs=107.4
Q ss_pred CCccccchHHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhhhhc-----cCCCCE-EEEEEecCCCCHHHHH
Q 039535 19 TERTLVGLQSQLEQVWRCLIEES-AGIIGLYGMGGVGKTTLLIHINNKFLES-----RTNFDF-VIWVVVSKDPRLEKIQ 91 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----~~~~~~-~~w~~~~~~~~~~~~~ 91 (769)
.-++++|.+..++.+.+++..+. .+.+.++|++|+|||++|+.+++..... ...+.. ++-++....... +..
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~i 93 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV-DDI 93 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-HHH
Confidence 34678999999999999997655 4578899999999999999998887210 011111 111111111111 111
Q ss_pred HHHHHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEccccccc--ccccccccCCCCCCCCcEEEEEc-Cchhhhcc
Q 039535 92 EDIGKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVFTT-RFFDVCGS 168 (769)
Q Consensus 92 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iiitt-r~~~~~~~ 168 (769)
+.+....... ...+++-++|+|+++... .+..+...+. .....+.+|+++ +...+...
T Consensus 94 ~~l~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le-~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 94 RNLIDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLE-EPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HHHHHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHh-CCCCceEEEEEeCCcccCCHH
Confidence 1122111100 112345589999996432 2444433333 222344555544 33322221
Q ss_pred -cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHH
Q 039535 169 -MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGR 227 (769)
Q Consensus 169 -~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 227 (769)
......+++.+++.++...++...+...+...+ .+.++.+++.++|.+..+.....
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~~~~~le 211 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALRDALSIFD 211 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHHHHHHH
Confidence 223457999999999999999987765443333 35677888889987664444333
No 94
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=1e-06 Score=96.93 Aligned_cols=194 Identities=12% Similarity=0.067 Sum_probs=107.6
Q ss_pred CccccchHHHHHHHHHHhhcCCceE-EEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHc
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESAGI-IGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRI 98 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~~~-v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l 98 (769)
-+++||.+..++.|..++..++... +.++|+.|+||||+|+.+++.+- -..... +..++. -..-+.+...-
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~---~~pCg~----C~~C~~i~~~~ 83 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN-CAQGPT---ATPCGV----CESCVALAPNG 83 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-cccCCC---CCcccc----cHHHHHhhccc
Confidence 3678999999999999998766554 68999999999999999998872 100000 000000 00000000000
Q ss_pred CCC-----CCCCCCccHHH---HHHHHHHH-hccceEEEEEcccccc--cccccccccCCCCCCCCcEEEEEc-Cchhhh
Q 039535 99 GLV-----DDSWKSKSVEE---KALDIFRS-LREKRIVLLLDDIWER--LDLTKVGVPLPGPKNTTSKVVFTT-RFFDVC 166 (769)
Q Consensus 99 ~~~-----~~~~~~~~~~~---~~~~l~~~-l~~~~~llvlDd~~~~--~~~~~~~~~l~~~~~~~~~iiitt-r~~~~~ 166 (769)
... .+......+++ +...+... ..+++-++|+|+++.. .....+...+. .....+.+|++| ....+.
T Consensus 84 ~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LE-Epp~~~~fIL~tte~~kll 162 (584)
T PRK14952 84 PGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVE-EPPEHLIFIFATTEPEKVL 162 (584)
T ss_pred CCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHh-cCCCCeEEEEEeCChHhhH
Confidence 000 00001111222 11111111 1345568899999643 23333433343 223355555555 433333
Q ss_pred cc-cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHH
Q 039535 167 GS-MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTI 225 (769)
Q Consensus 167 ~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 225 (769)
.. ......+++.+++.++..+++.+.+...+...+ .+.+..|++.++|.+..+..+
T Consensus 163 ~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR~aln~ 219 (584)
T PRK14952 163 PTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPRDTLSV 219 (584)
T ss_pred HHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 22 234578999999999999999888765543233 345678889999977543333
No 95
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.58 E-value=1.6e-09 Score=112.01 Aligned_cols=153 Identities=25% Similarity=0.347 Sum_probs=99.7
Q ss_pred CcceeEEEEeeccccccC-CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCE
Q 039535 380 WENVRRLSLMQNQIKVLS-EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLEL 458 (769)
Q Consensus 380 ~~~l~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~ 458 (769)
+......+++.|++..++ .+..|..|+.+.++.|. +..+|.. +.++..|.+|+++.| .+..+|..++.|+ |+.
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~-i~~L~~lt~l~ls~N---qlS~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEA-ICNLEALTFLDLSSN---QLSHLPDGLCDLP-LKV 147 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchh-hhhhhHHHHhhhccc---hhhcCChhhhcCc-cee
Confidence 344555667777765544 45666777777777776 5555543 677777777777777 6667776666655 777
Q ss_pred EeccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhh
Q 039535 459 LDISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELL 538 (769)
Q Consensus 459 L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 538 (769)
|-+++|+++.+|..++-+..|..||.+.|. +..+|.. ++.+.+|+.|++..|.+.. ++..+.
T Consensus 148 li~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~~----------------lp~El~ 209 (722)
T KOG0532|consen 148 LIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLED----------------LPEELC 209 (722)
T ss_pred EEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhhh----------------CCHHHh
Confidence 777777777777777766777777777775 6666666 6777777777777766553 344444
Q ss_pred cCCCceEEEEEeCChhhHH
Q 039535 539 GLKYLEVLELTLGSYHALQ 557 (769)
Q Consensus 539 ~l~~L~~l~l~~~~~~~~~ 557 (769)
.| .|..|+++++.+..++
T Consensus 210 ~L-pLi~lDfScNkis~iP 227 (722)
T KOG0532|consen 210 SL-PLIRLDFSCNKISYLP 227 (722)
T ss_pred CC-ceeeeecccCceeecc
Confidence 33 2556666655554443
No 96
>PF13173 AAA_14: AAA domain
Probab=98.58 E-value=1.1e-07 Score=83.98 Aligned_cols=120 Identities=18% Similarity=0.169 Sum_probs=78.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL 121 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l 121 (769)
.++++|+|+.|+||||++++++++.. ....++++++.......... .+ ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~------------------~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLAD------------------PD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhh------------------hh-hHHHHHHhh
Confidence 46899999999999999999999972 34466777655432211000 00 223333333
Q ss_pred ccceEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhhhcc------cCCCceEEeecCCHHHH
Q 039535 122 REKRIVLLLDDIWERLDLTKVGVPLPGPKNTTSKVVFTTRFFDVCGS------MEAHRTFEVACLSEKDA 185 (769)
Q Consensus 122 ~~~~~llvlDd~~~~~~~~~~~~~l~~~~~~~~~iiittr~~~~~~~------~~~~~~~~l~~l~~~e~ 185 (769)
.+++.+++||+++...+|......+. ......+|++|+.+...... .+....+++.|++-.|.
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~-d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLV-DNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHH-HhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 34778999999988877777766655 33356789999887654321 12345689999997763
No 97
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.57 E-value=1e-06 Score=97.92 Aligned_cols=189 Identities=13% Similarity=0.146 Sum_probs=107.4
Q ss_pred CccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHc
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESA-GIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRI 98 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l 98 (769)
-.++||.+..++.+..++..++. +.+.++||+|+|||++|+.+++.+-- ..... .+..+ ...... .
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC-~~~~~--~~~pC-------~~C~~~---~ 83 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNC-SHKTD--LLEPC-------QECIEN---V 83 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc-cccCC--CCCch-------hHHHHh---h
Confidence 36789999999999999987654 45689999999999999999988711 01000 00000 000000 0
Q ss_pred CCCC-----CCCCCccHHHHHHHHHHHh-----ccceEEEEEcccccc--cccccccccCCCCCCCCcEEEE-EcCchhh
Q 039535 99 GLVD-----DSWKSKSVEEKALDIFRSL-----REKRIVLLLDDIWER--LDLTKVGVPLPGPKNTTSKVVF-TTRFFDV 165 (769)
Q Consensus 99 ~~~~-----~~~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~--~~~~~~~~~l~~~~~~~~~iii-ttr~~~~ 165 (769)
+... ........++ ++.+.+.. .+++-++|+|+++.. ..+..+...+. .....+.+|+ |++...+
T Consensus 84 ~~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLE-EPP~~tifILaTte~~KL 161 (725)
T PRK07133 84 NNSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLE-EPPKHVIFILATTEVHKI 161 (725)
T ss_pred cCCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhh-cCCCceEEEEEcCChhhh
Confidence 0000 0000011121 22222222 355668999999643 23334443333 2223444444 4444433
Q ss_pred hcc-cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 166 CGS-MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 166 ~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
... ....+.+++.+++.++..+.+...+...+...+ .+.+..+++.++|.+..+..+.
T Consensus 162 l~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 162 PLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred hHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 322 234578999999999999999887655442222 3457789999998775444443
No 98
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.56 E-value=5.3e-06 Score=84.92 Aligned_cols=205 Identities=14% Similarity=0.158 Sum_probs=125.0
Q ss_pred CCccccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHH
Q 039535 19 TERTLVGLQSQLEQVWRCLIE----ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDI 94 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 94 (769)
.+...+||+.+++.+.+++.. ...+.+.|.|.+|.|||.+...+..+. .....-..++++++-.-....+++..+
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~-~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSL-SKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhh-hhhcccceeEEEeeccccchHHHHHHH
Confidence 356789999999999999864 567889999999999999999999887 222223356778777666777777777
Q ss_pred HHHcCCCCCCCCCccHHHHHHHHHHHhcc--ceEEEEEccccccc--ccccc--cccCCCCCCCCcEEEEE--cCchh--
Q 039535 95 GKRIGLVDDSWKSKSVEEKALDIFRSLRE--KRIVLLLDDIWERL--DLTKV--GVPLPGPKNTTSKVVFT--TRFFD-- 164 (769)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~--~~~llvlDd~~~~~--~~~~~--~~~l~~~~~~~~~iiit--tr~~~-- 164 (769)
...+..... .+....+....+.+...+ ..+++|+|+.|... ....+ ...++ .-+++++|+. ...-+
T Consensus 227 ~~~~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp--~lp~sr~iLiGiANslDlT 302 (529)
T KOG2227|consen 227 FSSLLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWP--KLPNSRIILIGIANSLDLT 302 (529)
T ss_pred HHHHHHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcc--cCCcceeeeeeehhhhhHH
Confidence 777621110 111114445555555533 46899999997421 11111 12222 1223444332 22111
Q ss_pred --hhcccC-----CCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHhc
Q 039535 165 --VCGSME-----AHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAMA 230 (769)
Q Consensus 165 --~~~~~~-----~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~ 230 (769)
++..+. .-..+.+.+++.++..+++.++...... .......++.+++++.|.---+..+..+.+
T Consensus 303 dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t--~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 303 DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST--SIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc--cccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 122211 2357899999999999999998865441 122223455555665555555555554444
No 99
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.56 E-value=2.7e-09 Score=110.41 Aligned_cols=148 Identities=22% Similarity=0.237 Sum_probs=116.3
Q ss_pred EEEeeccccccC--CC-CCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEecc
Q 039535 386 LSLMQNQIKVLS--EV-PTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDIS 462 (769)
Q Consensus 386 l~l~~~~~~~~~--~~-~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~ 462 (769)
|.|++.++..++ .. ..+..-...+++.|. +..+|.. +..|..|..+.+..| .+..+|..+.++..|.+|+++
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR-~~elp~~-~~~f~~Le~liLy~n---~~r~ip~~i~~L~~lt~l~ls 129 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNR-FSELPEE-ACAFVSLESLILYHN---CIRTIPEAICNLEALTFLDLS 129 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccc-cccCchH-HHHHHHHHHHHHHhc---cceecchhhhhhhHHHHhhhc
Confidence 344444444333 11 345555667888888 7777765 788899999999998 788899999999999999999
Q ss_pred CCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCC
Q 039535 463 HSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKY 542 (769)
Q Consensus 463 ~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 542 (769)
.|.++.+|..++.|+ |+.|.+++|+ ++.+|+. ++.+.+|.+|+.+.|.+.+ .+..++.+.+
T Consensus 130 ~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~-ig~~~tl~~ld~s~nei~s----------------lpsql~~l~s 190 (722)
T KOG0532|consen 130 SNQLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEE-IGLLPTLAHLDVSKNEIQS----------------LPSQLGYLTS 190 (722)
T ss_pred cchhhcCChhhhcCc-ceeEEEecCc-cccCCcc-cccchhHHHhhhhhhhhhh----------------chHHhhhHHH
Confidence 999999999887654 8999999887 8899998 7899999999999998775 6777888888
Q ss_pred ceEEEEEeCChhhHH
Q 039535 543 LEVLELTLGSYHALQ 557 (769)
Q Consensus 543 L~~l~l~~~~~~~~~ 557 (769)
|+.|.+..++...+.
T Consensus 191 lr~l~vrRn~l~~lp 205 (722)
T KOG0532|consen 191 LRDLNVRRNHLEDLP 205 (722)
T ss_pred HHHHHHhhhhhhhCC
Confidence 888876666554443
No 100
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.56 E-value=1.1e-06 Score=85.04 Aligned_cols=181 Identities=15% Similarity=0.186 Sum_probs=111.3
Q ss_pred CCccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCC-EEEEEEecCCCCHH---HHHHHH
Q 039535 19 TERTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFD-FVIWVVVSKDPRLE---KIQEDI 94 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~---~~~~~l 94 (769)
.-.+++|.+..+.-+...+.....++..+|||+|.|||+.|+.++..+ .-.+-|. +++=.+.+...+.. .-....
T Consensus 34 t~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~Kik~f 112 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVREKIKNF 112 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhhhhcCH
Confidence 346789999999999999987667889999999999999999999998 2222333 33322333222111 000000
Q ss_pred HHHcCCCCCCCCCccHHHHHHHHHHHh--ccce-EEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCchhh-hcc
Q 039535 95 GKRIGLVDDSWKSKSVEEKALDIFRSL--REKR-IVLLLDDIWER--LDLTKVGVPLPGPKNTTSKVVFTTRFFDV-CGS 168 (769)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~l~~~l--~~~~-~llvlDd~~~~--~~~~~~~~~l~~~~~~~~~iiittr~~~~-~~~ 168 (769)
...... .-... ...+ -++|||+++.. +.|..+..-+. .....+++|+.+..... ...
T Consensus 113 akl~~~----------------~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE-~~s~~trFiLIcnylsrii~p 175 (346)
T KOG0989|consen 113 AKLTVL----------------LKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTME-DFSRTTRFILICNYLSRIIRP 175 (346)
T ss_pred HHHhhc----------------cccccCCCCCcceEEEEechhhhhHHHHHHHHHHHh-ccccceEEEEEcCChhhCChH
Confidence 000000 00000 1123 48999999754 34555554444 34456666666654322 111
Q ss_pred -cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcch
Q 039535 169 -MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPL 220 (769)
Q Consensus 169 -~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 220 (769)
......+++.++.+++..+-++.++..++.+.+. +..+.|++.++|--.
T Consensus 176 i~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~---~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 176 LVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDD---DALKLIAKISDGDLR 225 (346)
T ss_pred HHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCcHH
Confidence 1234568999999999999999998777655553 566788888887443
No 101
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.55 E-value=1.6e-06 Score=82.52 Aligned_cols=161 Identities=16% Similarity=0.123 Sum_probs=91.5
Q ss_pred HHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhhhccC------------------CCCEEEEEEecCCCCHHHHHH
Q 039535 32 QVWRCLIEESA-GIIGLYGMGGVGKTTLLIHINNKFLESRT------------------NFDFVIWVVVSKDPRLEKIQE 92 (769)
Q Consensus 32 ~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~------------------~~~~~~w~~~~~~~~~~~~~~ 92 (769)
.+.+.+.+++. ..+.++|++|+|||++|+.+++.+..... .+....++.........+..+
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~ 82 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVR 82 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHH
Confidence 34555555554 57889999999999999999988721100 111112221111100011111
Q ss_pred HHHHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCch-hhhcc-
Q 039535 93 DIGKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVFTTRFF-DVCGS- 168 (769)
Q Consensus 93 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iiittr~~-~~~~~- 168 (769)
++...+... ...+.+-++|+||++... ....+...+. .....+.+|++|++. .+...
T Consensus 83 ~i~~~~~~~------------------~~~~~~kviiide~~~l~~~~~~~Ll~~le-~~~~~~~~il~~~~~~~l~~~i 143 (188)
T TIGR00678 83 ELVEFLSRT------------------PQESGRRVVIIEDAERMNEAAANALLKTLE-EPPPNTLFILITPSPEKLLPTI 143 (188)
T ss_pred HHHHHHccC------------------cccCCeEEEEEechhhhCHHHHHHHHHHhc-CCCCCeEEEEEECChHhChHHH
Confidence 111111110 013456789999996532 2344444444 333455666666543 22221
Q ss_pred cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcch
Q 039535 169 MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPL 220 (769)
Q Consensus 169 ~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 220 (769)
......+.+.+++.++..+++.+. + .+ .+.+..+++.++|.|.
T Consensus 144 ~sr~~~~~~~~~~~~~~~~~l~~~-g-----i~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 144 RSRCQVLPFPPLSEEALLQWLIRQ-G-----IS---EEAAELLLALAGGSPG 186 (188)
T ss_pred HhhcEEeeCCCCCHHHHHHHHHHc-C-----CC---HHHHHHHHHHcCCCcc
Confidence 123468999999999999999887 1 11 3568899999999885
No 102
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=2e-06 Score=93.34 Aligned_cols=183 Identities=11% Similarity=0.105 Sum_probs=107.8
Q ss_pred CccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhhhhc--cC----------------CCCEEEEEE
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESAG-IIGLYGMGGVGKTTLLIHINNKFLES--RT----------------NFDFVIWVV 80 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~--~~----------------~~~~~~w~~ 80 (769)
-.+++|.+..++.+..++..+... ++.++|++|+||||+|+.++..+--. .. .+..+.+++
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eid 94 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEID 94 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEe
Confidence 366899999999999999876544 56789999999999999999887210 00 001111111
Q ss_pred ecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh--ccceEEEEEcccccc--cccccccccCCCCCCCCcEE
Q 039535 81 VSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL--REKRIVLLLDDIWER--LDLTKVGVPLPGPKNTTSKV 156 (769)
Q Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l--~~~~~llvlDd~~~~--~~~~~~~~~l~~~~~~~~~i 156 (769)
....... ......... .... .+++-++|+|+++.. .....+...+. .......+
T Consensus 95 aas~~gv--------------------d~ir~I~~~-~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LE-epp~~~v~ 152 (486)
T PRK14953 95 AASNRGI--------------------DDIRALRDA-VSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLE-EPPPRTIF 152 (486)
T ss_pred CccCCCH--------------------HHHHHHHHH-HHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHh-cCCCCeEE
Confidence 1111000 011111111 1111 356679999999643 22333433343 22234445
Q ss_pred EEEc-Cchhhhcc-cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHH
Q 039535 157 VFTT-RFFDVCGS-MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGR 227 (769)
Q Consensus 157 iitt-r~~~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 227 (769)
|++| +...+... ......+.+.+++.++...++.+++...+...+ .+.+..+++.++|.+..+.....
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id---~~al~~La~~s~G~lr~al~~Ld 222 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE---EKALDLLAQASEGGMRDAASLLD 222 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 5444 43333221 223467999999999999999988765543333 35567888999998765555543
No 103
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=1.6e-06 Score=96.05 Aligned_cols=198 Identities=14% Similarity=0.125 Sum_probs=111.7
Q ss_pred CccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhhhccCCCC-EEEEEEecCCCCHHHHHHHHHHH
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESA-GIIGLYGMGGVGKTTLLIHINNKFLESRTNFD-FVIWVVVSKDPRLEKIQEDIGKR 97 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~l~~~ 97 (769)
-.++||.+..++.|..++..++. ..+.++|+.|+||||+|+.+++.+--...... ...+..+. .-..-+.+...
T Consensus 23 f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg----~c~~C~~i~~g 98 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG----VGEHCQAIMEG 98 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc----ccHHHHHHhcC
Confidence 36789999999999999987664 46889999999999999999998721000000 00000000 00001111110
Q ss_pred cCCC---CCCCCCccHHHHHHHHHHHh-----ccceEEEEEccccccc--ccccccccCCCCCCCCcEEEEEc-Cchhhh
Q 039535 98 IGLV---DDSWKSKSVEEKALDIFRSL-----REKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVFTT-RFFDVC 166 (769)
Q Consensus 98 l~~~---~~~~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iiitt-r~~~~~ 166 (769)
.-.. .+......+++. +.+.+.. .+++-++|+|+++... ....+...+. .....+.+|++| ....+.
T Consensus 99 ~h~Dv~e~~a~s~~gvd~I-ReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLE-ePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDI-REIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLE-EPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred CCCceEEecccccCCHHHH-HHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHH-hCCCCeEEEEEeCChhhhh
Confidence 0000 000011122221 1222222 3345678999996542 2344444443 233455565555 333332
Q ss_pred cc-cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 167 GS-MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 167 ~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
.. ......+++..++.++...++.+.+.......+ .+.+..|++.++|.+..+....
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 22 234568999999999999999998765543333 3567789999999887665554
No 104
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=9.8e-07 Score=96.95 Aligned_cols=179 Identities=17% Similarity=0.151 Sum_probs=107.4
Q ss_pred CccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhhhhccC------------------CCCEEEEEE
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESAG-IIGLYGMGGVGKTTLLIHINNKFLESRT------------------NFDFVIWVV 80 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~------------------~~~~~~w~~ 80 (769)
-+++||.+..++.+..++..++.. .+.++|++|+||||+|+.+++.+--... .+..+++++
T Consensus 15 f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~ 94 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVD 94 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEee
Confidence 367899999999999999876654 5689999999999999999988710000 011112222
Q ss_pred ecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-----ccceEEEEEccccccc--ccccccccCCCCCCCC
Q 039535 81 VSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-----REKRIVLLLDDIWERL--DLTKVGVPLPGPKNTT 153 (769)
Q Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~ 153 (769)
... ...+++. +.+.+.. .+++-++|+|+++... ....+...+. .....
T Consensus 95 ~~~-----------------------~~~vd~i-r~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LE-epp~~ 149 (527)
T PRK14969 95 AAS-----------------------NTQVDAM-RELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLE-EPPEH 149 (527)
T ss_pred ccc-----------------------cCCHHHH-HHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHh-CCCCC
Confidence 111 1111111 1121211 3556799999997542 2333333333 22334
Q ss_pred cEEEEEcCch-hhhcc-cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 154 SKVVFTTRFF-DVCGS-MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 154 ~~iiittr~~-~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
+.+|++|.++ .+... ......+++.+++.++..+.+.+.+...+...+ ++.+..|++.++|.+..+....
T Consensus 150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~---~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD---ATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 5565555443 22211 123467899999999999999888755442222 3556788999999876443333
No 105
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=2.1e-06 Score=95.22 Aligned_cols=200 Identities=15% Similarity=0.126 Sum_probs=108.9
Q ss_pred CCccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEe-cCCCCHHHHHHHHHH
Q 039535 19 TERTLVGLQSQLEQVWRCLIEESAG-IIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVV-SKDPRLEKIQEDIGK 96 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~l~~ 96 (769)
.-.++||.+..++.+..++..++.. .+.++|++|+||||+|+.+++.+. -........|... ...=+.-..-+.+..
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~-c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~ 92 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDPVYLQEVTEPCGECESCRDFDA 92 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC-CCCcCCccccccccCCCCccCHHHHHHhc
Confidence 3467899999999999999776654 588999999999999999998882 1111000011100 000000000011100
Q ss_pred HcCCC---CCCCCCccHHHHHHHHHHHh-----ccceEEEEEccccccc--ccccccccCCCCCCCCcEEE-EEcCchhh
Q 039535 97 RIGLV---DDSWKSKSVEEKALDIFRSL-----REKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVV-FTTRFFDV 165 (769)
Q Consensus 97 ~l~~~---~~~~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~ii-ittr~~~~ 165 (769)
.-... -+.......++... +.+.+ .+.+-++|+|+++... ....+...+. .....+.+| +|++...+
T Consensus 93 g~~~n~~~~d~~s~~~vd~Ir~-l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LE-ePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 93 GTSLNISEFDAASNNSVDDIRQ-LRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLE-EPPPHAIFIFATTELHKI 170 (620)
T ss_pred cCCCCeEEecccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHh-CCCCCeEEEEEeCChhhh
Confidence 00000 00001111222222 22222 3445578999996542 2444544444 222344444 44443333
Q ss_pred hcc-cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHH
Q 039535 166 CGS-MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVT 224 (769)
Q Consensus 166 ~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 224 (769)
... ......+++.+++.++....+.+.+...+...+ .+.++.+++.++|....+..
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~---~eal~~La~~s~Gdlr~al~ 227 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID---ADALQLIARKAQGSMRDAQS 227 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHH
Confidence 322 344678999999999999999887754432233 35677899999996654433
No 106
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.51 E-value=1.9e-06 Score=98.76 Aligned_cols=176 Identities=11% Similarity=0.100 Sum_probs=108.1
Q ss_pred ccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhhhhccCCC---------------------CEEEE
Q 039535 21 RTLVGLQSQLEQVWRCLIEESAG-IIGLYGMGGVGKTTLLIHINNKFLESRTNF---------------------DFVIW 78 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~---------------------~~~~w 78 (769)
.++||.+..++.|..++..++.. .+.++|+.|+||||+|+.+++.+- -.... ..+++
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~-C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~e 93 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN-CVEGPTSTPCGECDSCVALAPGGPGSLDVTE 93 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC-cccCCCCCCCcccHHHHHHHcCCCCCCcEEE
Confidence 56899999999999999876654 478999999999999999998882 10000 01112
Q ss_pred EEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHH-----HhccceEEEEEccccccc--ccccccccCCCCCC
Q 039535 79 VVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFR-----SLREKRIVLLLDDIWERL--DLTKVGVPLPGPKN 151 (769)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~-----~l~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~ 151 (769)
++... ...+++... +.+ -..++.-++|||+++... ....+...+. ...
T Consensus 94 idaas-----------------------~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LE-EpP 148 (824)
T PRK07764 94 IDAAS-----------------------HGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVE-EPP 148 (824)
T ss_pred ecccc-----------------------cCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHh-CCC
Confidence 21111 111222211 111 124555689999997542 2333444443 333
Q ss_pred CCcEEEEEcCc-hhhhcc-cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHH
Q 039535 152 TTSKVVFTTRF-FDVCGS-MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTI 225 (769)
Q Consensus 152 ~~~~iiittr~-~~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 225 (769)
..+.+|++|.+ ..+... ....+.|++..++.++..+++.+.+...+...+ .+....|++.++|.+..+...
T Consensus 149 ~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id---~eal~lLa~~sgGdlR~Al~e 221 (824)
T PRK07764 149 EHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE---PGVLPLVIRAGGGSVRDSLSV 221 (824)
T ss_pred CCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 45556655543 333332 234578999999999999999888755443323 345668888999977544433
No 107
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.50 E-value=4.1e-06 Score=88.75 Aligned_cols=172 Identities=21% Similarity=0.245 Sum_probs=99.8
Q ss_pred CccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCC
Q 039535 20 ERTLVGLQSQLEQVWRCLIE-------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPR 86 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~ 86 (769)
..++.|++++++++.+.+.. ...+.+.|+|++|+|||++|++++++. ...| +.+.
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~---- 188 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVV---- 188 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecc----
Confidence 35789999999999887631 124568899999999999999999987 2222 1111
Q ss_pred HHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEccccccc----------------ccccccccCCC-
Q 039535 87 LEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERL----------------DLTKVGVPLPG- 148 (769)
Q Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~----------------~~~~~~~~l~~- 148 (769)
...+..... + ........+.+.. ...+.+|++||++... .+..+...+..
T Consensus 189 ~~~l~~~~~---g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~ 256 (364)
T TIGR01242 189 GSELVRKYI---G---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF 256 (364)
T ss_pred hHHHHHHhh---h---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC
Confidence 111111110 0 0112223333333 3457899999996421 01112111210
Q ss_pred CCCCCcEEEEEcCchhh-----hcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcc
Q 039535 149 PKNTTSKVVFTTRFFDV-----CGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLP 219 (769)
Q Consensus 149 ~~~~~~~iiittr~~~~-----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 219 (769)
....+..||.||..... .....-...+.++..+.++..+++..+........+-. ...+++.+.|..
T Consensus 257 ~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 257 DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 11245677777775432 22112345799999999999999998875544222222 345667776654
No 108
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=1.8e-06 Score=94.58 Aligned_cols=182 Identities=16% Similarity=0.175 Sum_probs=110.2
Q ss_pred CCccccchHHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCC-------------------CEEEE
Q 039535 19 TERTLVGLQSQLEQVWRCLIEES-AGIIGLYGMGGVGKTTLLIHINNKFLESRTNF-------------------DFVIW 78 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~-------------------~~~~w 78 (769)
.-+++||.+..++.|..++.+++ ...+.++|++|+||||+|+.+++.+- -.... ..+++
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~-C~~~~~~~pCg~C~sC~~i~~g~hpDv~e 92 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN-CETAPTGEPCNTCEQCRKVTQGMHVDVVE 92 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc-ccCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 33678999999999999887665 46788999999999999999998882 11000 01222
Q ss_pred EEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHH-----hccceEEEEEcccccc--cccccccccCCCCCC
Q 039535 79 VVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRS-----LREKRIVLLLDDIWER--LDLTKVGVPLPGPKN 151 (769)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~-----l~~~~~llvlDd~~~~--~~~~~~~~~l~~~~~ 151 (769)
++.... ..+++. +.+.+. ..+++-++|+|+++.. .....+...+. ...
T Consensus 93 Id~a~~-----------------------~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LE-EP~ 147 (624)
T PRK14959 93 IDGASN-----------------------RGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLE-EPP 147 (624)
T ss_pred Eecccc-----------------------cCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhh-ccC
Confidence 211111 111111 111111 2455679999999654 22334444443 222
Q ss_pred CCcEEEEEcCc-hhhhcc-cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcc-hHHHHHHHH
Q 039535 152 TTSKVVFTTRF-FDVCGS-MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLP-LALVTIGRA 228 (769)
Q Consensus 152 ~~~~iiittr~-~~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-lai~~~~~~ 228 (769)
....+|++|.. ..+... ......+++.+++.++..+++...+.......+ .+.+..|++.++|.. .++..+...
T Consensus 148 ~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id---~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 148 ARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD---PAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred CCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34555555544 333322 233467899999999999999887765442233 356778899999865 566655443
Q ss_pred h
Q 039535 229 M 229 (769)
Q Consensus 229 l 229 (769)
+
T Consensus 225 l 225 (624)
T PRK14959 225 L 225 (624)
T ss_pred H
Confidence 3
No 109
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.49 E-value=1.6e-06 Score=100.54 Aligned_cols=178 Identities=11% Similarity=0.113 Sum_probs=103.4
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCC-----CEEEEEEecCCCCHHHHHHHHH
Q 039535 21 RTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNF-----DFVIWVVVSKDPRLEKIQEDIG 95 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~-----~~~~w~~~~~~~~~~~~~~~l~ 95 (769)
.++|||+.++.++++.+.......++++|++|+|||++|+.++++.... ... ..++.++.+. + .
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~-~v~~~l~~~~i~~l~l~~------l----~ 255 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAG-DVPPALRNVRLLSLDLGL------L----Q 255 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhC-CCCccccCCeEEEeehhh------h----h
Confidence 6789999999999999977666678899999999999999999998321 111 1222222211 0 0
Q ss_pred HHcCCCCCCCCCccHHHHHHHHHHHhc--cceEEEEEccccccc-------ccc---cccccCCCCCCCCcEEEEEcCch
Q 039535 96 KRIGLVDDSWKSKSVEEKALDIFRSLR--EKRIVLLLDDIWERL-------DLT---KVGVPLPGPKNTTSKVVFTTRFF 163 (769)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~~-------~~~---~~~~~l~~~~~~~~~iiittr~~ 163 (769)
.........++.++.+.+... +.++++++|+++... ..+ .+...+ ..+..++|-+|...
T Consensus 256 ------ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l---~~G~l~~IgaTT~~ 326 (852)
T TIGR03345 256 ------AGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL---ARGELRTIAATTWA 326 (852)
T ss_pred ------cccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh---hCCCeEEEEecCHH
Confidence 000022233444444444442 468999999996431 111 122222 22345566666543
Q ss_pred hhh-------cccCCCceEEeecCCHHHHHHHHHHHhccccC-CCchhHHHHHHHHHHHhCCc
Q 039535 164 DVC-------GSMEAHRTFEVACLSEKDAWELFQEKVGEETL-KSDHDIAELAQTVAKKCGGL 218 (769)
Q Consensus 164 ~~~-------~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~-~~~~~~~~~~~~i~~~~~G~ 218 (769)
... +.....+.+.+++++.+++.+++......... ..-....+....+++.+.+.
T Consensus 327 e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 327 EYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 221 11124468999999999999997554432110 11122345556666666553
No 110
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.47 E-value=3.8e-06 Score=90.58 Aligned_cols=184 Identities=12% Similarity=0.137 Sum_probs=107.5
Q ss_pred CCccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhhhccC---CCC----------------EEEE
Q 039535 19 TERTLVGLQSQLEQVWRCLIEESA-GIIGLYGMGGVGKTTLLIHINNKFLESRT---NFD----------------FVIW 78 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~---~~~----------------~~~w 78 (769)
.-.++||.+..++.+..++..++. ..+.++|++|+|||++|+.+++.+--... ... .+++
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~ 94 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLE 94 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEE
Confidence 346789999999999999987664 56789999999999999999988721100 000 0111
Q ss_pred EEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHH-HHhccceEEEEEccccccc--ccccccccCCCCCCCCcE
Q 039535 79 VVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIF-RSLREKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSK 155 (769)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~ 155 (769)
+........ ....+....+. ....+.+-++|+|+++... ....+...+. .....+.
T Consensus 95 i~g~~~~gi--------------------d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lE-ep~~~~~ 153 (451)
T PRK06305 95 IDGASHRGI--------------------EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLE-EPPQHVK 153 (451)
T ss_pred eeccccCCH--------------------HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhh-cCCCCce
Confidence 111000000 11111111111 0113556788999996432 2333444443 2233555
Q ss_pred EEEEcC-chhhhcc-cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 156 VVFTTR-FFDVCGS-MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 156 iiittr-~~~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
+|++|. ...+... ......+++.++++++..+.+.+.+...+...+ ++.+..+++.++|.+..+....
T Consensus 154 ~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~---~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 154 FFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS---REALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 555553 3333222 234567999999999999999887755432233 3567789999999765443333
No 111
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.47 E-value=4.6e-06 Score=90.33 Aligned_cols=180 Identities=12% Similarity=0.099 Sum_probs=110.0
Q ss_pred CccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhhhhccCC------------------CCEEEEEE
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESAG-IIGLYGMGGVGKTTLLIHINNKFLESRTN------------------FDFVIWVV 80 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~~------------------~~~~~w~~ 80 (769)
-.++||.+...+.+..++..++.. +..++|++|+|||++|+.+++.+--.... ...++.++
T Consensus 13 fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eld 92 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMD 92 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEec
Confidence 367899999999999999877655 55899999999999999999887210000 01122221
Q ss_pred ecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHH--H--hccceEEEEEccccccc--ccccccccCCCCCCCCc
Q 039535 81 VSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFR--S--LREKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTS 154 (769)
Q Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~--~--l~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~ 154 (769)
..... ..++....+.. . ..+++-++|+|+++... ....+...+. .....+
T Consensus 93 aas~~-----------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LE-Epp~~t 148 (535)
T PRK08451 93 AASNR-----------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLE-EPPSYV 148 (535)
T ss_pred ccccc-----------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHh-hcCCce
Confidence 11111 12222221111 0 12456688999996532 2333333333 223456
Q ss_pred EEEEEcCch-hhhc-ccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 155 KVVFTTRFF-DVCG-SMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 155 ~iiittr~~-~~~~-~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
.+|++|.++ .+.. -......+++.+++.++..+.+.+.+...+...+ .+.+..|++.++|.+..+....
T Consensus 149 ~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~---~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 149 KFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE---PEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred EEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 666666553 2211 1223568999999999999999988766553333 4567789999999886655554
No 112
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=5.5e-06 Score=92.87 Aligned_cols=198 Identities=15% Similarity=0.124 Sum_probs=112.5
Q ss_pred CCccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 039535 19 TERTLVGLQSQLEQVWRCLIEESA-GIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKR 97 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 97 (769)
.-+++||.+..++.|..++..++. ..+.++|++|+||||+|+.+++.+- ...... -+..+ +.....+.+...
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-c~~~~~--~~~~c----~~c~~c~~i~~~ 86 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN-CTTNDP--KGRPC----GTCEMCRAIAEG 86 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC--CCCCC----ccCHHHHHHhcC
Confidence 346789999999999999876654 4568999999999999999998871 100000 00000 011122222211
Q ss_pred cCCCC---CCCCCccHHHHHHHHHHHh-----ccceEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCc-hhhh
Q 039535 98 IGLVD---DSWKSKSVEEKALDIFRSL-----REKRIVLLLDDIWER--LDLTKVGVPLPGPKNTTSKVVFTTRF-FDVC 166 (769)
Q Consensus 98 l~~~~---~~~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~--~~~~~~~~~l~~~~~~~~~iiittr~-~~~~ 166 (769)
..... ........++. +.+.+.+ .+++-++|+|+++.. .....+...+. .....+.+|+++.+ ..+.
T Consensus 87 ~~~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LE-epp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 87 SAVDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLE-EPPPHAIFILATTEVHKVP 164 (585)
T ss_pred CCCeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHh-cCCCCeEEEEEeCChhhhh
Confidence 11000 00011112221 2222222 245678999999643 23444444443 22334556655543 2332
Q ss_pred cc-cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHH
Q 039535 167 GS-MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRA 228 (769)
Q Consensus 167 ~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 228 (769)
.. ......+.+..++.++....+...+...+...+ .+.+..+++.++|.+..+......
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~~Lek 224 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAENLLQQ 224 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 21 223467899999999999999888766543333 356778999999988765555443
No 113
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.43 E-value=2.1e-06 Score=92.49 Aligned_cols=185 Identities=12% Similarity=0.086 Sum_probs=112.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLR 122 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 122 (769)
..++|+|++|+|||+|++++++.+.+ ......+++++ ..++...+...++.. ......+.+..+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~-~~~~~~v~yv~------~~~f~~~~~~~l~~~---------~~~~~~~~~~~~ 205 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIES-NFSDLKVSYMS------GDEFARKAVDILQKT---------HKEIEQFKNEIC 205 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEE------HHHHHHHHHHHHHHh---------hhHHHHHHHHhc
Confidence 45889999999999999999998732 23334556664 345666666555321 012233444444
Q ss_pred cceEEEEEccccccc----ccccccccCCCCCCCCcEEEEEcCc-hh--------hhcccCCCceEEeecCCHHHHHHHH
Q 039535 123 EKRIVLLLDDIWERL----DLTKVGVPLPGPKNTTSKVVFTTRF-FD--------VCGSMEAHRTFEVACLSEKDAWELF 189 (769)
Q Consensus 123 ~~~~llvlDd~~~~~----~~~~~~~~l~~~~~~~~~iiittr~-~~--------~~~~~~~~~~~~l~~l~~~e~~~l~ 189 (769)
. .-++|+||++... ..+.+...+......+..||+|+.. +. +.+++...-.+.+.+++.++..+++
T Consensus 206 ~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 206 Q-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred c-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHH
Confidence 3 3478899996432 1122222222112234467777653 22 2334445567899999999999999
Q ss_pred HHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHh------c---CCCCHHHHHHHHHHH
Q 039535 190 QEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAM------A---SKKTAEEWRHAIEEL 245 (769)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l------~---~~~~~~~~~~~l~~l 245 (769)
.+.+...+.. ....++.+..|++.++|.|..+.-+...+ . ..-+.+.....++.+
T Consensus 285 ~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 285 KKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 9988654321 12335778899999999998776665433 1 113556666666554
No 114
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.42 E-value=2.6e-06 Score=98.38 Aligned_cols=155 Identities=15% Similarity=0.212 Sum_probs=94.0
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCC--C-CEEEE-EEecCCCCHHHHHHHHHH
Q 039535 21 RTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTN--F-DFVIW-VVVSKDPRLEKIQEDIGK 96 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~--~-~~~~w-~~~~~~~~~~~~~~~l~~ 96 (769)
+++|||+.+++++.+.|.......++++|++|+|||++|+.++++....... . ...+| ++ ...+ ..
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~------~~~l----~a 251 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD------MGSL----LA 251 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec------HHHH----hh
Confidence 5799999999999999976666678899999999999999999998332111 1 22233 22 1111 11
Q ss_pred HcCCCCCCCCCccHHHHHHHHHHHhc-cceEEEEEccccccc--------c---cccccccCCCCCCCCcEEEEEcCchh
Q 039535 97 RIGLVDDSWKSKSVEEKALDIFRSLR-EKRIVLLLDDIWERL--------D---LTKVGVPLPGPKNTTSKVVFTTRFFD 164 (769)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~llvlDd~~~~~--------~---~~~~~~~l~~~~~~~~~iiittr~~~ 164 (769)
... ...+.++.++.+.+.+. ..+.++++|+++... + ...+...+. .....+|-+|....
T Consensus 252 ~~~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaTt~~e 322 (731)
T TIGR02639 252 GTK------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGSTTYEE 322 (731)
T ss_pred hcc------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEecCHHH
Confidence 000 12344555666666553 357899999996321 0 111222222 22334555554322
Q ss_pred hh-------cccCCCceEEeecCCHHHHHHHHHHHhc
Q 039535 165 VC-------GSMEAHRTFEVACLSEKDAWELFQEKVG 194 (769)
Q Consensus 165 ~~-------~~~~~~~~~~l~~l~~~e~~~l~~~~~~ 194 (769)
.. +.....+.+.+.+++.++..+++.....
T Consensus 323 ~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 323 YKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKE 359 (731)
T ss_pred HHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHH
Confidence 11 1112346799999999999999987653
No 115
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.41 E-value=1.9e-07 Score=100.77 Aligned_cols=107 Identities=28% Similarity=0.382 Sum_probs=57.1
Q ss_pred CCCCCCceEEEeecccchhcccCcccccCC-cccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCccchhhhcCC
Q 039535 399 VPTCPHLLTLFLDFNRELMMIAGGYFQFMP-SLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEELPEELKLLV 477 (769)
Q Consensus 399 ~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~-~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~ 477 (769)
+.....+..|.+.+|. +.++++. ....+ +|+.|++++| .+..+|..+..+++|+.|+++.|+++.+|...+..+
T Consensus 112 ~~~~~~l~~L~l~~n~-i~~i~~~-~~~~~~nL~~L~l~~N---~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~ 186 (394)
T COG4886 112 LLELTNLTSLDLDNNN-ITDIPPL-IGLLKSNLKELDLSDN---KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLS 186 (394)
T ss_pred hhcccceeEEecCCcc-cccCccc-cccchhhccccccccc---chhhhhhhhhccccccccccCCchhhhhhhhhhhhh
Confidence 3334555555555444 4555542 23332 5666666665 555554455555666666666666665555544555
Q ss_pred CCceeeccCCCcccccchHHhcCCCcCcEEEeecc
Q 039535 478 NLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFAT 512 (769)
Q Consensus 478 ~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~ 512 (769)
+|+.|++++|. +..+|.. ...+..|++|.+++|
T Consensus 187 ~L~~L~ls~N~-i~~l~~~-~~~~~~L~~l~~~~N 219 (394)
T COG4886 187 NLNNLDLSGNK-ISDLPPE-IELLSALEELDLSNN 219 (394)
T ss_pred hhhheeccCCc-cccCchh-hhhhhhhhhhhhcCC
Confidence 66666666554 5555553 234444555555555
No 116
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=7.1e-06 Score=91.65 Aligned_cols=183 Identities=13% Similarity=0.158 Sum_probs=109.4
Q ss_pred CccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhhhhc--------------------cCCCCEEEE
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESAG-IIGLYGMGGVGKTTLLIHINNKFLES--------------------RTNFDFVIW 78 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~--------------------~~~~~~~~w 78 (769)
-+++||.+..++.+..++..++.. .+.++|+.|+||||+|+.++..+--. ..+++ +..
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~~~ 94 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-IHE 94 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-eEE
Confidence 367899999999999999876654 57899999999999999998876200 01121 122
Q ss_pred EEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccc--cccccccccCCCCCCCCcEE
Q 039535 79 VVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWER--LDLTKVGVPLPGPKNTTSKV 156 (769)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~~~~~l~~~~~~~~~i 156 (769)
++......... .+.+..++... -..+++-++|+|+++.. .....+...+. .....+.+
T Consensus 95 ld~~~~~~vd~-Ir~li~~~~~~------------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LE-epp~~tif 154 (614)
T PRK14971 95 LDAASNNSVDD-IRNLIEQVRIP------------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLE-EPPSYAIF 154 (614)
T ss_pred ecccccCCHHH-HHHHHHHHhhC------------------cccCCcEEEEEECcccCCHHHHHHHHHHHh-CCCCCeEE
Confidence 22111111111 11111111110 01234558899999653 23444544444 22334555
Q ss_pred EE-EcCchhhhcc-cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 157 VF-TTRFFDVCGS-MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 157 ii-ttr~~~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
|+ |++...+... ......+++.+++.++....+.+.+...+...+ .+.++.|++.+||...-+....
T Consensus 155 IL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr~al~~L 223 (614)
T PRK14971 155 ILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMRDALSIF 223 (614)
T ss_pred EEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 54 4444444332 234578999999999999999987766553333 3457789999999776444433
No 117
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=7.8e-06 Score=91.30 Aligned_cols=196 Identities=15% Similarity=0.103 Sum_probs=109.3
Q ss_pred ccccchHHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcC
Q 039535 21 RTLVGLQSQLEQVWRCLIEES-AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIG 99 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~ 99 (769)
.+++|.+..++.|..++..++ .+.+.++|+.|+||||+|+.+++.+- +..........+ +.-...+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~--c~~~~~~~~~~C----g~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN--CLNSDKPTPEPC----GKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc--CCCcCCCCCCCC----cccHHHHHHhcCCC
Confidence 668999999999999997655 35788999999999999999999972 111000000000 01111122211111
Q ss_pred CCC---CCCCCccHHHHHHHHHHHh-----ccceEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCc-hhhhcc
Q 039535 100 LVD---DSWKSKSVEEKALDIFRSL-----REKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVFTTRF-FDVCGS 168 (769)
Q Consensus 100 ~~~---~~~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iiittr~-~~~~~~ 168 (769)
... .......+++ ++.+.+.. .+++-++|+|+++... ....+...+. .....+.+|++|.+ ..+...
T Consensus 90 ~D~~ei~~~~~~~vd~-IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LE-ePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 90 LDVIEIDAASNTGVDN-IRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLE-EPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred ccEEEEeccccCCHHH-HHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHh-cCCcCeEEEEEeCChhhhhHH
Confidence 000 0001111111 12222222 2455688999997542 2334444443 22234445544443 333222
Q ss_pred -cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHH
Q 039535 169 -MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGR 227 (769)
Q Consensus 169 -~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 227 (769)
......+++..++.++....+.+.+...+...+ .+.+..|++.++|.+..+.....
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 234567889999999999988887765442333 34577899999998865554443
No 118
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.38 E-value=1.5e-07 Score=92.30 Aligned_cols=240 Identities=16% Similarity=0.133 Sum_probs=133.0
Q ss_pred CcceeEEEEeeccccc-----c-CCCCCCCCceEEEeeccc---chhcccC------cccccCCcccEEEeeccCccccc
Q 039535 380 WENVRRLSLMQNQIKV-----L-SEVPTCPHLLTLFLDFNR---ELMMIAG------GYFQFMPSLKVLKISNIGYFNVL 444 (769)
Q Consensus 380 ~~~l~~l~l~~~~~~~-----~-~~~~~~~~L~~L~l~~~~---~~~~i~~------~~~~~l~~L~~L~l~~~~~~~~~ 444 (769)
...+..+.+++|.+.. + +.+.+.+.|+..+++.-. ....+|. .++..++.|++|+||+|-+ +..
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~-G~~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF-GPK 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc-Ccc
Confidence 4567778888877721 1 123455577777766421 1112221 1245567788888887732 222
Q ss_pred cCC---ccccCCCCCCEEeccCCCCCccch--------------hhhcCCCCceeeccCCCcccccchH----HhcCCCc
Q 039535 445 KLP---LGMSKLGSLELLDISHSSIEELPE--------------ELKLLVNLKCLNLRWTDVLNKIPRQ----LISNLSR 503 (769)
Q Consensus 445 ~l~---~~~~~l~~L~~L~l~~~~i~~lp~--------------~~~~l~~L~~L~l~~~~~l~~lp~~----~~~~l~~ 503 (769)
.++ .-+..+..|++|.|.+|++..... .+.+-++|+++...+|. +.+-+.. ++...+.
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHPT 186 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhccc
Confidence 222 234567777888887777652211 13345677777777775 4444332 2455677
Q ss_pred CcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccc
Q 039535 504 VRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYF 583 (769)
Q Consensus 504 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~ 583 (769)
|+++.+..|.+.+.. .......+..+++|+.|++..+.++.-...
T Consensus 187 leevr~~qN~I~~eG-----------~~al~eal~~~~~LevLdl~DNtft~egs~------------------------ 231 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEG-----------VTALAEALEHCPHLEVLDLRDNTFTLEGSV------------------------ 231 (382)
T ss_pred cceEEEecccccCch-----------hHHHHHHHHhCCcceeeecccchhhhHHHH------------------------
Confidence 777777777765421 123455666777777777776655433322
Q ss_pred cccccccccccccceeeccccCcceEeeeeeccccccC-CCccccccceEeecCcccccc-----cccccccCCccEEee
Q 039535 584 IDATAFADLKHLNELQIHDCRGLEELKIDYTEIAQKRR-EPFVFRSLRRVTMVSCHKLKD-----LTFLVFAPNLKSISL 657 (769)
Q Consensus 584 ~~~~~l~~~~~L~~L~l~~~~~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~l~~-----l~~l~~l~~L~~L~l 657 (769)
.....+..+++|++|+++.|- ++...-..+.. ...+.++|+.|.+.+|.--.+ ...+...+.|+.|+|
T Consensus 232 ~LakaL~s~~~L~El~l~dcl------l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnL 305 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCL------LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNL 305 (382)
T ss_pred HHHHHhcccchheeecccccc------cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcC
Confidence 011255666778888887762 11111111110 113467888888888742222 112445788888888
Q ss_pred cCChh
Q 039535 658 GDCDA 662 (769)
Q Consensus 658 ~~~~~ 662 (769)
++|..
T Consensus 306 ngN~l 310 (382)
T KOG1909|consen 306 NGNRL 310 (382)
T ss_pred Ccccc
Confidence 88865
No 119
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=9e-06 Score=89.70 Aligned_cols=197 Identities=15% Similarity=0.097 Sum_probs=111.0
Q ss_pred CCccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 039535 19 TERTLVGLQSQLEQVWRCLIEESA-GIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKR 97 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 97 (769)
.-.++||.+..++.+..++.+++. +.+.++|++|+||||+|+.+++.+- -...... ..+.. -..-+.+...
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~-c~~~~~~---~pC~~----C~~C~~i~~~ 85 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN-CVNGPTP---MPCGE----CSSCKSIDND 85 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc-cccCCCC---CCCcc----chHHHHHHcC
Confidence 336789999999999999987654 4588999999999999999999872 1100000 00000 0000011000
Q ss_pred cCCC---CCCCCCccHHHHHHH---HHH-HhccceEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCc-hhhhc
Q 039535 98 IGLV---DDSWKSKSVEEKALD---IFR-SLREKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVFTTRF-FDVCG 167 (769)
Q Consensus 98 l~~~---~~~~~~~~~~~~~~~---l~~-~l~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iiittr~-~~~~~ 167 (769)
-... -........++.... +.. -..+++-++|+|+++... ....+...+. .....+.+|++|.. ..+..
T Consensus 86 ~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LE-epp~~~vfI~~tte~~kL~~ 164 (563)
T PRK06647 86 NSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIE-EPPPYIVFIFATTEVHKLPA 164 (563)
T ss_pred CCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhc-cCCCCEEEEEecCChHHhHH
Confidence 0000 000011122222111 111 123556689999996432 3444444444 33345566665543 23322
Q ss_pred c-cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHH
Q 039535 168 S-MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGR 227 (769)
Q Consensus 168 ~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 227 (769)
. ......+++.+++.++..+++.+.+...+...+ .+.+..|++.++|.+..+.....
T Consensus 165 tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id---~eAl~lLa~~s~GdlR~alslLd 222 (563)
T PRK06647 165 TIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE---DEALKWIAYKSTGSVRDAYTLFD 222 (563)
T ss_pred HHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 2 233567999999999999999888755443333 45677899999998865554443
No 120
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.36 E-value=1.3e-05 Score=85.26 Aligned_cols=171 Identities=19% Similarity=0.268 Sum_probs=98.3
Q ss_pred ccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 21 RTLVGLQSQLEQVWRCLIE-------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
+++.|++++++++.+.+.. ...+.|.++|++|+|||++|++++++. ... |+.+..
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----
Confidence 5678999999999887631 234568899999999999999999987 222 222211
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEccccccc------------c----cccccccCCC-C
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERL------------D----LTKVGVPLPG-P 149 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~------------~----~~~~~~~l~~-~ 149 (769)
..+. .... . ........+++.. ...+.+|++||++... + +..+...+.+ .
T Consensus 199 ~~l~----~~~~-------g-~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 SELV----QKFI-------G-EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred HHHh----Hhhc-------c-chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 1111 1110 0 1112233333333 3457899999997421 0 1111111211 1
Q ss_pred CCCCcEEEEEcCchhhhc-----ccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcc
Q 039535 150 KNTTSKVVFTTRFFDVCG-----SMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLP 219 (769)
Q Consensus 150 ~~~~~~iiittr~~~~~~-----~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 219 (769)
...+..||.||....... .-.-+..+.+++.+.++..+++..+........+-. ...+++.+.|.-
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 123556777776543211 112345799999999999999998876544332222 345666666643
No 121
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.36 E-value=7.5e-06 Score=82.34 Aligned_cols=155 Identities=13% Similarity=0.147 Sum_probs=83.2
Q ss_pred ccccchHHHHHHHHHHhh---------c------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCC
Q 039535 21 RTLVGLQSQLEQVWRCLI---------E------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDP 85 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~---------~------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~ 85 (769)
.++||.+...+++.+... . +....+.++|++|+||||+|+.+++.+.+.. ......++.+...
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~-~~~~~~~v~~~~~- 83 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMN-VLSKGHLIEVERA- 83 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcC-cccCCceEEecHH-
Confidence 457898887777754321 0 1345688999999999999999998862211 1111112222221
Q ss_pred CHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEccccccc----------ccccccccCCCCCCCCcE
Q 039535 86 RLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERL----------DLTKVGVPLPGPKNTTSK 155 (769)
Q Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~----------~~~~~~~~l~~~~~~~~~ 155 (769)
++. ... .... ......+.+... .-+|++|+++... ....+...+. .......
T Consensus 84 ---~l~----~~~-------~g~~-~~~~~~~~~~a~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e-~~~~~~~ 145 (261)
T TIGR02881 84 ---DLV----GEY-------IGHT-AQKTREVIKKAL--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGME-DNRNEFV 145 (261)
T ss_pred ---Hhh----hhh-------ccch-HHHHHHHHHhcc--CCEEEEechhhhccCCccchHHHHHHHHHHHHh-ccCCCEE
Confidence 111 111 0011 111222222222 2488999996421 2223333333 2223345
Q ss_pred EEEEcCchhh----------hcccCCCceEEeecCCHHHHHHHHHHHhcccc
Q 039535 156 VVFTTRFFDV----------CGSMEAHRTFEVACLSEKDAWELFQEKVGEET 197 (769)
Q Consensus 156 iiittr~~~~----------~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~ 197 (769)
+|+++..... .+.+ ...+.+++++.+|..+++.+.+....
T Consensus 146 vila~~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el~~Il~~~~~~~~ 195 (261)
T TIGR02881 146 LILAGYSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEELMEIAERMVKERE 195 (261)
T ss_pred EEecCCcchhHHHHhcChHHHhcc--ceEEEECCCCHHHHHHHHHHHHHHcC
Confidence 5555543221 1221 34689999999999999998886544
No 122
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.36 E-value=1.3e-05 Score=79.11 Aligned_cols=204 Identities=16% Similarity=0.121 Sum_probs=118.9
Q ss_pred CccccchHH---HHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCC---CCEEEEEEecCCCCHHHH
Q 039535 20 ERTLVGLQS---QLEQVWRCLIE---ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTN---FDFVIWVVVSKDPRLEKI 90 (769)
Q Consensus 20 ~~~~vgR~~---~~~~l~~~l~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~---~~~~~w~~~~~~~~~~~~ 90 (769)
.+.+||-.. .+++|.+.+.. .+.+-+.|+|++|+|||++++++.+.+....+. .-.|+.+.....++...+
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHH
Confidence 356777543 34444444543 345678999999999999999999888432211 114777888889999999
Q ss_pred HHHHHHHcCCCCCCCCCccHHHHHHHHHHHhcc-ceEEEEEcccccc-----cccccc---cccCCCCCCCCcEEEEEcC
Q 039535 91 QEDIGKRIGLVDDSWKSKSVEEKALDIFRSLRE-KRIVLLLDDIWER-----LDLTKV---GVPLPGPKNTTSKVVFTTR 161 (769)
Q Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~llvlDd~~~~-----~~~~~~---~~~l~~~~~~~~~iiittr 161 (769)
+..|+.+++.+.... ...........+.++. +.-++|+|++.+. .+-+.+ ...+. ..-.-+.|.+.|+
T Consensus 113 Y~~IL~~lgaP~~~~--~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~-NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 113 YSAILEALGAPYRPR--DRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLG-NELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHhCcccCCC--CCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHh-hccCCCeEEeccH
Confidence 999999999876432 3333333333344433 3348999999652 111111 11221 2223456677776
Q ss_pred chhhhcc-----cCCCceEEeecCCHH-HHHHHHHHHhccccC--CCchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 162 FFDVCGS-----MEAHRTFEVACLSEK-DAWELFQEKVGEETL--KSDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 162 ~~~~~~~-----~~~~~~~~l~~l~~~-e~~~l~~~~~~~~~~--~~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
....+-. .+....+.++....+ +...++......-.. ...-...+++..|...++|+.--+..+.
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll 262 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLL 262 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHH
Confidence 5432111 122355677776644 444444433221111 1111235788999999999886555443
No 123
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.36 E-value=4.6e-07 Score=68.04 Aligned_cols=60 Identities=35% Similarity=0.531 Sum_probs=40.3
Q ss_pred CCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCC-ccccCCCCCCEEeccCCCC
Q 039535 403 PHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLP-LGMSKLGSLELLDISHSSI 466 (769)
Q Consensus 403 ~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i 466 (769)
++|++|++++|. +..++...|.++++|++|++++| .+..++ ..+..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N---~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNN---NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSS---SESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCC---ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 456777777664 66777666777777777777777 555554 3456777777777777654
No 124
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.32 E-value=9.3e-06 Score=87.47 Aligned_cols=181 Identities=22% Similarity=0.197 Sum_probs=103.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLR 122 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 122 (769)
..++|+|++|+|||+|++++++++.+ ......+++++. ..+...+...+... .. ..+.+.++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~-~~~~~~v~yi~~------~~~~~~~~~~~~~~-------~~----~~~~~~~~ 198 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILE-NNPNAKVVYVSS------EKFTNDFVNALRNN-------KM----EEFKEKYR 198 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHH-hCCCCcEEEEEH------HHHHHHHHHHHHcC-------CH----HHHHHHHH
Confidence 46889999999999999999999832 222345666643 33444444444311 11 22233333
Q ss_pred cceEEEEEccccccccc----ccccccCCCCCCCCcEEEEEcCc-hh--------hhcccCCCceEEeecCCHHHHHHHH
Q 039535 123 EKRIVLLLDDIWERLDL----TKVGVPLPGPKNTTSKVVFTTRF-FD--------VCGSMEAHRTFEVACLSEKDAWELF 189 (769)
Q Consensus 123 ~~~~llvlDd~~~~~~~----~~~~~~l~~~~~~~~~iiittr~-~~--------~~~~~~~~~~~~l~~l~~~e~~~l~ 189 (769)
+ .-+|++||++..... +.+...+......+..+|+|+.. +. +.+.+.....+.+.+.+.++..+++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 237889999643211 11211111011223456676653 22 2233334457999999999999999
Q ss_pred HHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHhc-------CCCCHHHHHHHHHHH
Q 039535 190 QEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAMA-------SKKTAEEWRHAIEEL 245 (769)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~-------~~~~~~~~~~~l~~l 245 (769)
.+.+.......+ ++....|++.+.|....+.-+...+. ..-+.+.....+...
T Consensus 278 ~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 278 QKKAEEEGLELP---DEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 999876543333 46677888888887764443322221 112555566655543
No 125
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.32 E-value=1.9e-07 Score=91.61 Aligned_cols=242 Identities=17% Similarity=0.142 Sum_probs=140.3
Q ss_pred CCCCCCceEEEeecccchh---cccCcccccCCcccEEEeeccCc-cccccCCc-------cccCCCCCCEEeccCCCCC
Q 039535 399 VPTCPHLLTLFLDFNRELM---MIAGGYFQFMPSLKVLKISNIGY-FNVLKLPL-------GMSKLGSLELLDISHSSIE 467 (769)
Q Consensus 399 ~~~~~~L~~L~l~~~~~~~---~i~~~~~~~l~~L~~L~l~~~~~-~~~~~l~~-------~~~~l~~L~~L~l~~~~i~ 467 (769)
...+..++.|++|+|..-. ......+.+.+.|+..++++-.- .....+|+ .+-.+++|++|+||.|-+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 4567889999999987211 11123466778999999987410 01122333 3456679999999999665
Q ss_pred -----ccchhhhcCCCCceeeccCCCcccccchHH-------------hcCCCcCcEEEeeccCCCccccccccccccCC
Q 039535 468 -----ELPEELKLLVNLKCLNLRWTDVLNKIPRQL-------------ISNLSRVRVLRMFATGYDRFHEASEDSVLFGG 529 (769)
Q Consensus 468 -----~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~-------------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 529 (769)
.+...+.+++.|++|.|.||. ++...... ...-++|+.+....|.....+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~g----------- 173 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGG----------- 173 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccccc-----------
Confidence 233447789999999999997 44332221 122356777777776655321
Q ss_pred ccchhhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccccceeeccccCcceE
Q 039535 530 GEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGLEEL 609 (769)
Q Consensus 530 ~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l 609 (769)
-..+-..++..+.|+.+.++.+.+..-.. ......+..|++|++|+|..
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~eG~------------------------~al~eal~~~~~LevLdl~D------- 222 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRPEGV------------------------TALAEALEHCPHLEVLDLRD------- 222 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccCchh------------------------HHHHHHHHhCCcceeeeccc-------
Confidence 12344555666777777766554321111 00012445556665555544
Q ss_pred eeeeecccc-----ccCCCccccccceEeecCccccccccc-------ccccCCccEEeecCChhhhhhhccCccCCccc
Q 039535 610 KIDYTEIAQ-----KRREPFVFRSLRRVTMVSCHKLKDLTF-------LVFAPNLKSISLGDCDALEEIISVGKFAEVPE 677 (769)
Q Consensus 610 ~l~~~~~~~-----~~~~~~~~~~L~~L~L~~~~~l~~l~~-------l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 677 (769)
|.++. +....+.+++|++|++..| .+++=-. -...|+|++|.+.+|..-.+-.. .
T Consensus 223 ----Ntft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~--------~ 289 (382)
T KOG1909|consen 223 ----NTFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL--------A 289 (382)
T ss_pred ----chhhhHHHHHHHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH--------H
Confidence 43331 1222356788999999999 4555211 22368899999988754332100 0
Q ss_pred ccCCCCCCCcccccccccc
Q 039535 678 MMGHLSPFENLQNLDLSYL 696 (769)
Q Consensus 678 ~~~~~~~~~~L~~L~l~~c 696 (769)
........|.|+.|+|++|
T Consensus 290 la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 290 LAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHHhcchhhHHhcCCcc
Confidence 0112334678888888886
No 126
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.32 E-value=4.3e-07 Score=68.19 Aligned_cols=58 Identities=34% Similarity=0.541 Sum_probs=34.9
Q ss_pred CCCEEeccCCCCCccch-hhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccC
Q 039535 455 SLELLDISHSSIEELPE-ELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATG 513 (769)
Q Consensus 455 ~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~ 513 (769)
+|++|++++|+|+.+|. .+..+++|++|++++|. +..+++..+.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666665553 34556666666666555 555555556666666666666654
No 127
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.32 E-value=3.4e-05 Score=73.63 Aligned_cols=48 Identities=25% Similarity=0.407 Sum_probs=40.1
Q ss_pred CCccccchHHHHHHHHHHhhc---C-CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 19 TERTLVGLQSQLEQVWRCLIE---E-SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~---~-~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..++++|-+.+.+.+.+-... + ....|.++|..|+|||++++++.+++
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 447799999999999876543 3 44578899999999999999999998
No 128
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=1.7e-05 Score=87.92 Aligned_cols=194 Identities=14% Similarity=0.103 Sum_probs=106.4
Q ss_pred CccccchHHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHc
Q 039535 20 ERTLVGLQSQLEQVWRCLIEES-AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRI 98 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l 98 (769)
-+++||++..++.+..++..++ .+.+.++|+.|+|||++|+.+++.+- -....... .+. .-..-+.+....
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~-c~~~~~~~---pC~----~C~~C~~i~~g~ 86 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN-CLNPPDGE---PCN----ECEICKAITNGS 86 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCCC---CCC----ccHHHHHHhcCC
Confidence 3678999999999999998765 44577899999999999999988872 11100000 000 000011111000
Q ss_pred CCCC---CCCCCccHHHHHHHHHHH-----hccceEEEEEccccccc--ccccccccCCCCCCCCcEEEEEc-Cchhhhc
Q 039535 99 GLVD---DSWKSKSVEEKALDIFRS-----LREKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVFTT-RFFDVCG 167 (769)
Q Consensus 99 ~~~~---~~~~~~~~~~~~~~l~~~-----l~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iiitt-r~~~~~~ 167 (769)
.... +.......+ .++.+.+. ..++.-++|+|+++... ....+...+. .....+.+|++| ....+..
T Consensus 87 ~~dv~eidaas~~~vd-~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLE-epp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 87 LMDVIEIDAASNNGVD-EIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLE-EPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred CCCeEEeeccccCCHH-HHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhc-CCCCCeEEEEEeCChhhCcH
Confidence 0000 000111111 11122222 13456688999996442 2333333333 222344555444 4333322
Q ss_pred c-cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 168 S-MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 168 ~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
. ......+.+.+++.++..+.+...+...+...+ .+.+..|++.++|.+..+....
T Consensus 165 tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~al~~L 221 (559)
T PRK05563 165 TILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDALSIL 221 (559)
T ss_pred HHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 2 234567899999999999999888765443333 3556788888888776544433
No 129
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.30 E-value=5.3e-06 Score=76.65 Aligned_cols=95 Identities=18% Similarity=0.225 Sum_probs=65.0
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCC
Q 039535 21 RTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGL 100 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~ 100 (769)
.++||-++.++++.-...++..+.++|.||||+||||-+..+++++- ....-+.+.=.+.+...+.
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LL-G~~~ke~vLELNASdeRGI------------- 92 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELL-GDSYKEAVLELNASDERGI------------- 92 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHh-ChhhhhHhhhccCcccccc-------------
Confidence 67899999999999988888899999999999999999999999981 1112223333333333222
Q ss_pred CCCCCCCccHHHHHHHHHHHh----ccceEEEEEcccccc
Q 039535 101 VDDSWKSKSVEEKALDIFRSL----REKRIVLLLDDIWER 136 (769)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~~l----~~~~~llvlDd~~~~ 136 (769)
+.+...++.+.+.- +++.-++|||++|+.
T Consensus 93 -------DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 93 -------DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred -------HHHHHHHHHHHHhhccCCCCceeEEEeeccchh
Confidence 22222333333222 467789999999864
No 130
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.30 E-value=4.2e-05 Score=72.63 Aligned_cols=197 Identities=14% Similarity=0.140 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCC
Q 039535 26 LQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSW 105 (769)
Q Consensus 26 R~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~ 105 (769)
+.+.+..+...+. ++.+++.++|+-|+|||.+.+.....+ .+.-..++ +--.+......+...+...+.......
T Consensus 36 h~e~l~~l~~~i~-d~qg~~~vtGevGsGKTv~~Ral~~s~---~~d~~~~v-~i~~~~~s~~~~~~ai~~~l~~~p~~~ 110 (269)
T COG3267 36 HNEALLMLHAAIA-DGQGILAVTGEVGSGKTVLRRALLASL---NEDQVAVV-VIDKPTLSDATLLEAIVADLESQPKVN 110 (269)
T ss_pred hhHHHHHHHHHHh-cCCceEEEEecCCCchhHHHHHHHHhc---CCCceEEE-EecCcchhHHHHHHHHHHHhccCccch
Confidence 4444444444443 556799999999999999999666665 22111222 223345677888888888887632211
Q ss_pred CCccHHHHHHHHHHHh-ccce-EEEEEcccccc--cccc---cccccCCCCCCCCcEEEEEcCchh-------hhccc-C
Q 039535 106 KSKSVEEKALDIFRSL-REKR-IVLLLDDIWER--LDLT---KVGVPLPGPKNTTSKVVFTTRFFD-------VCGSM-E 170 (769)
Q Consensus 106 ~~~~~~~~~~~l~~~l-~~~~-~llvlDd~~~~--~~~~---~~~~~l~~~~~~~~~iiittr~~~-------~~~~~-~ 170 (769)
.....+..-+.+.+.. +++| +++++||+.+. ..++ -+...-. .....-.|+....++- ..+.. .
T Consensus 111 ~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~-~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~ 189 (269)
T COG3267 111 VNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEE-DSSKLLSIVLIGQPKLRPRLRLPVLRELEQ 189 (269)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcc-cccCceeeeecCCcccchhhchHHHHhhhh
Confidence 2222333333344433 4555 99999999532 2222 2222211 1222223444443321 11111 1
Q ss_pred CCce-EEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHH
Q 039535 171 AHRT-FEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRA 228 (769)
Q Consensus 171 ~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 228 (769)
.... |++.|++.++...++..++.......+-..++....|.....|.|.+|+.++..
T Consensus 190 R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 190 RIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred eEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 1223 899999999999999999876653333334567788999999999999988743
No 131
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.29 E-value=2.3e-05 Score=88.08 Aligned_cols=202 Identities=14% Similarity=0.049 Sum_probs=104.3
Q ss_pred CCccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCC---CEEEEEEecCC---CCHHHHHH
Q 039535 19 TERTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNF---DFVIWVVVSKD---PRLEKIQE 92 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~---~~~~w~~~~~~---~~~~~~~~ 92 (769)
.-++++|++..+..+.+.+.......+.|+|++|+||||+|+.+.+.... ...+ ...-|+.+... .+...+..
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~-~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKK-LKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhh-ccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 34678999999999988876556668999999999999999998876521 1111 11233333221 11222211
Q ss_pred HH---------------HHHcCCCC----------------CCCCCccHHHHHHHHHHHhccceEEEEEcccccc--ccc
Q 039535 93 DI---------------GKRIGLVD----------------DSWKSKSVEEKALDIFRSLREKRIVLLLDDIWER--LDL 139 (769)
Q Consensus 93 ~l---------------~~~l~~~~----------------~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~ 139 (769)
.+ +...+... ++... -.......+.+.+.++++.++-|+.|.. ..|
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~-Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGE-LDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEecccc-CCHHHHHHHHHHHhhCeEEeecceeccCCcccc
Confidence 11 11111110 00000 1112334455555555666555544322 123
Q ss_pred ccccccCCCCCCCCcEEEE--EcCchhh-hccc-CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHh
Q 039535 140 TKVGVPLPGPKNTTSKVVF--TTRFFDV-CGSM-EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKC 215 (769)
Q Consensus 140 ~~~~~~l~~~~~~~~~iii--ttr~~~~-~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~ 215 (769)
+.+...+. .......+++ ||++... ...+ .....+.+.+++.++..+++.+.+........ +++.+.|.+.+
T Consensus 310 ~~ik~~~~-~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls---~eal~~L~~ys 385 (615)
T TIGR02903 310 KYIKKLFE-EGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA---AGVEELIARYT 385 (615)
T ss_pred hhhhhhcc-cCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHCC
Confidence 33333333 2233333444 4554321 1111 12346789999999999999998764331222 34445555555
Q ss_pred CCcchHHHHHH
Q 039535 216 GGLPLALVTIG 226 (769)
Q Consensus 216 ~G~Plai~~~~ 226 (769)
..-+.++..++
T Consensus 386 ~~gRraln~L~ 396 (615)
T TIGR02903 386 IEGRKAVNILA 396 (615)
T ss_pred CcHHHHHHHHH
Confidence 44455555444
No 132
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.29 E-value=6.4e-06 Score=88.76 Aligned_cols=201 Identities=16% Similarity=0.143 Sum_probs=115.6
Q ss_pred ccc-cchHHHHH--HHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHH
Q 039535 21 RTL-VGLQSQLE--QVWRCLIE-ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGK 96 (769)
Q Consensus 21 ~~~-vgR~~~~~--~l~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 96 (769)
++| +|-..... ...+...+ +....++|+|++|+|||+|++++++.+. .......++|++. .++...+..
T Consensus 105 dnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~-~~~~~~~v~yi~~------~~f~~~~~~ 177 (440)
T PRK14088 105 ENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVV-QNEPDLRVMYITS------EKFLNDLVD 177 (440)
T ss_pred cccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHH-HhCCCCeEEEEEH------HHHHHHHHH
Confidence 345 47544433 33333322 2234589999999999999999999983 2222346777754 445556655
Q ss_pred HcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEccccccc-------ccccccccCCCCCCCCcEEEEEcC-chh----
Q 039535 97 RIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERL-------DLTKVGVPLPGPKNTTSKVVFTTR-FFD---- 164 (769)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~-------~~~~~~~~l~~~~~~~~~iiittr-~~~---- 164 (769)
.+... ..+ .+.+..+...-++++||++... ++-.+...+. ..+..+|+|+. .+.
T Consensus 178 ~~~~~-------~~~----~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~---~~~k~iIitsd~~p~~l~~ 243 (440)
T PRK14088 178 SMKEG-------KLN----EFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELH---DSGKQIVICSDREPQKLSE 243 (440)
T ss_pred HHhcc-------cHH----HHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHH---HcCCeEEEECCCCHHHHHH
Confidence 54311 112 2233333345589999996421 1212222221 22446777774 332
Q ss_pred ----hhcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHh------cC-CC
Q 039535 165 ----VCGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAM------AS-KK 233 (769)
Q Consensus 165 ----~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l------~~-~~ 233 (769)
+.+.+.....+.+.+.+.+...+++.+.+.......+ ++.+..|++.+.|.-..+.-+...+ .+ ..
T Consensus 244 l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~---~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~i 320 (440)
T PRK14088 244 FQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEV 320 (440)
T ss_pred HHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCC
Confidence 2233444568899999999999999998865443333 4667788888887655444433222 11 13
Q ss_pred CHHHHHHHHHHH
Q 039535 234 TAEEWRHAIEEL 245 (769)
Q Consensus 234 ~~~~~~~~l~~l 245 (769)
+.+.....++.+
T Consensus 321 t~~~a~~~L~~~ 332 (440)
T PRK14088 321 DLKEAILLLKDF 332 (440)
T ss_pred CHHHHHHHHHHH
Confidence 566666666654
No 133
>PRK06620 hypothetical protein; Validated
Probab=98.29 E-value=6.2e-06 Score=79.55 Aligned_cols=134 Identities=10% Similarity=0.021 Sum_probs=79.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLR 122 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 122 (769)
+.+.|+|++|+|||+|++.+++.. .. .++.... . . + +..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~~~~--~----~-------------------~-------~~~~ 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIKDIF--F----N-------------------E-------EILE 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcchhh--h----c-------------------h-------hHHh
Confidence 568999999999999999887775 11 2211000 0 0 0 0011
Q ss_pred cceEEEEEcccccccc--cccccccCCCCCCCCcEEEEEcCchh-------hhcccCCCceEEeecCCHHHHHHHHHHHh
Q 039535 123 EKRIVLLLDDIWERLD--LTKVGVPLPGPKNTTSKVVFTTRFFD-------VCGSMEAHRTFEVACLSEKDAWELFQEKV 193 (769)
Q Consensus 123 ~~~~llvlDd~~~~~~--~~~~~~~l~~~~~~~~~iiittr~~~-------~~~~~~~~~~~~l~~l~~~e~~~l~~~~~ 193 (769)
..-++++||++..++ +-.+...+. ..|..+++|++.+. +.+++.....+++.+++.++..+++.+.+
T Consensus 85 -~~d~lliDdi~~~~~~~lf~l~N~~~---e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 85 -KYNAFIIEDIENWQEPALLHIFNIIN---EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred -cCCEEEEeccccchHHHHHHHHHHHH---hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHH
Confidence 224688899964322 222222222 34567888876432 23334445689999999999999998887
Q ss_pred ccccCCCchhHHHHHHHHHHHhCCcchHHH
Q 039535 194 GEETLKSDHDIAELAQTVAKKCGGLPLALV 223 (769)
Q Consensus 194 ~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 223 (769)
...+...+ ++.++.|++.+.|.-..+.
T Consensus 161 ~~~~l~l~---~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 161 SISSVTIS---RQIIDFLLVNLPREYSKII 187 (214)
T ss_pred HHcCCCCC---HHHHHHHHHHccCCHHHHH
Confidence 64432333 4566677777766554443
No 134
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.28 E-value=2.5e-06 Score=83.80 Aligned_cols=94 Identities=18% Similarity=0.114 Sum_probs=61.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC--CCHHHHHHHHHHHcCCCCCCCCCccHH----HH
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD--PRLEKIQEDIGKRIGLVDDSWKSKSVE----EK 113 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~----~~ 113 (769)
+....++|+|++|+|||||++.+++... . .+|+.++|+.+... .++.++++.+...+-.......+.... ..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~-~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAIT-K-NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccc-c-ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 4556889999999999999999999983 2 37889999886665 789999999833332211110111101 11
Q ss_pred HHHHHH-HhccceEEEEEccccc
Q 039535 114 ALDIFR-SLREKRIVLLLDDIWE 135 (769)
Q Consensus 114 ~~~l~~-~l~~~~~llvlDd~~~ 135 (769)
...... .-.++++++++|++..
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHH
Confidence 111111 1257899999999953
No 135
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.27 E-value=8.1e-06 Score=85.10 Aligned_cols=144 Identities=11% Similarity=0.079 Sum_probs=84.3
Q ss_pred CccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHc
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESA-GIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRI 98 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l 98 (769)
-.+++|.+...+.+.+++.++.. .++.++|++|+|||++|+.+++.. .. .+..++... ..... .+..+
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~---~~~~i~~~~-~~~~~-i~~~l--- 88 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GA---EVLFVNGSD-CRIDF-VRNRL--- 88 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Cc---cceEeccCc-ccHHH-HHHHH---
Confidence 36789999999999999976654 466669999999999999999876 11 223344333 11111 11111
Q ss_pred CCCCCCCCCccHHHHHHHHHHHh--ccceEEEEEcccccc--c-ccccccccCCCCCCCCcEEEEEcCchhh-hcc-cCC
Q 039535 99 GLVDDSWKSKSVEEKALDIFRSL--REKRIVLLLDDIWER--L-DLTKVGVPLPGPKNTTSKVVFTTRFFDV-CGS-MEA 171 (769)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~l--~~~~~llvlDd~~~~--~-~~~~~~~~l~~~~~~~~~iiittr~~~~-~~~-~~~ 171 (769)
..+.... .+.+-++|+||++.. . ....+...+. ....++.+|+|+..... ... ...
T Consensus 89 ----------------~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le-~~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 89 ----------------TRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFME-AYSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred ----------------HHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHH-hcCCCceEEEEcCChhhchHHHHhh
Confidence 1111111 234568899999644 1 1122222222 23356678888865321 111 122
Q ss_pred CceEEeecCCHHHHHHHHHH
Q 039535 172 HRTFEVACLSEKDAWELFQE 191 (769)
Q Consensus 172 ~~~~~l~~l~~~e~~~l~~~ 191 (769)
...+.++..+.++..+++..
T Consensus 152 ~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred ceEEEeCCCCHHHHHHHHHH
Confidence 35678888888888777654
No 136
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.2e-05 Score=89.68 Aligned_cols=189 Identities=13% Similarity=0.108 Sum_probs=104.4
Q ss_pred CccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHc
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESA-GIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRI 98 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l 98 (769)
-+++||.+..++.|..++..++. ..+.++|+.|+||||+|+.+++.+-- ....... .+.. ...-+.+...-
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c-~~~~~~~---~c~~----c~~c~~i~~g~ 86 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC-EQGLTAE---PCNV----CPPCVEITEGR 86 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC-CCCCCCC---CCCc----cHHHHHHhcCC
Confidence 36789999999999999987665 45689999999999999999988721 1100000 0000 00000000000
Q ss_pred CCC---CCCCCCccHHHHHHHHHHHh-----ccceEEEEEccccccc--ccccccccCCCCCCCCcEEEEEc-Cchhhhc
Q 039535 99 GLV---DDSWKSKSVEEKALDIFRSL-----REKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVFTT-RFFDVCG 167 (769)
Q Consensus 99 ~~~---~~~~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iiitt-r~~~~~~ 167 (769)
... .+......+++ ++.+.+.. .+++-++|+|+++... ....+...+. .....+.+|++| ....+..
T Consensus 87 ~~d~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LE-epp~~~~fIl~t~~~~kl~~ 164 (576)
T PRK14965 87 SVDVFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLE-EPPPHVKFIFATTEPHKVPI 164 (576)
T ss_pred CCCeeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHH-cCCCCeEEEEEeCChhhhhH
Confidence 000 00000111111 11222221 3445588999996532 2333433333 222345555544 4443432
Q ss_pred c-cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchH
Q 039535 168 S-MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLA 221 (769)
Q Consensus 168 ~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 221 (769)
. ......+++.+++.++....+...+...+...+ .+.+..|++.++|....
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~lr~ 216 (576)
T PRK14965 165 TILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSMRD 216 (576)
T ss_pred HHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHH
Confidence 2 234567899999999999999887765543333 35677888999886643
No 137
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.26 E-value=6.9e-07 Score=96.49 Aligned_cols=157 Identities=26% Similarity=0.358 Sum_probs=122.2
Q ss_pred CCCCCCcceeEEEEeeccccccCCCCCCC--CceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccC
Q 039535 375 PDVKGWENVRRLSLMQNQIKVLSEVPTCP--HLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSK 452 (769)
Q Consensus 375 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~ 452 (769)
......+.+..+.+..+.+..++...... +|+.|++++|. +..++.. ...+++|+.|++++| .+..+|...+.
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~-~~~l~~L~~L~l~~N---~l~~l~~~~~~ 184 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSP-LRNLPNLKNLDLSFN---DLSDLPKLLSN 184 (394)
T ss_pred hhhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhh-hhccccccccccCCc---hhhhhhhhhhh
Confidence 33444567899999999998887765554 89999999887 7777532 788999999999999 88888877778
Q ss_pred CCCCCEEeccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccc
Q 039535 453 LGSLELLDISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEV 532 (769)
Q Consensus 453 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 532 (769)
+++|+.|++++|+++.+|..+.....|+++.+++|.....+.. +.++.++..+.+.++....
T Consensus 185 ~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~--~~~~~~l~~l~l~~n~~~~---------------- 246 (394)
T COG4886 185 LSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSS--LSNLKNLSGLELSNNKLED---------------- 246 (394)
T ss_pred hhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchh--hhhcccccccccCCceeee----------------
Confidence 8999999999999999998777778899999999963433333 7788888888877776542
Q ss_pred hhhhhhcCCCceEEEEEeCChh
Q 039535 533 LIQELLGLKYLEVLELTLGSYH 554 (769)
Q Consensus 533 ~~~~l~~l~~L~~l~l~~~~~~ 554 (769)
.+..++.+++++.|+++.+.+.
T Consensus 247 ~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 247 LPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred ccchhccccccceecccccccc
Confidence 2455677777888877755443
No 138
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.26 E-value=2.4e-05 Score=85.52 Aligned_cols=178 Identities=19% Similarity=0.121 Sum_probs=104.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLR 122 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 122 (769)
..++|+|++|+|||.|++++++...+ ......+++++. .++...+...+.. .. ...+.+.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~-~~~g~~V~Yita------eef~~el~~al~~-------~~----~~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARR-LYPGTRVRYVSS------EEFTNEFINSIRD-------GK----GDSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeH------HHHHHHHHHHHHh-------cc----HHHHHHHhh
Confidence 35899999999999999999999832 222345667643 4444444443321 11 122233333
Q ss_pred cceEEEEEccccccc-------ccccccccCCCCCCCCcEEEEEcCch---------hhhcccCCCceEEeecCCHHHHH
Q 039535 123 EKRIVLLLDDIWERL-------DLTKVGVPLPGPKNTTSKVVFTTRFF---------DVCGSMEAHRTFEVACLSEKDAW 186 (769)
Q Consensus 123 ~~~~llvlDd~~~~~-------~~~~~~~~l~~~~~~~~~iiittr~~---------~~~~~~~~~~~~~l~~l~~~e~~ 186 (769)
+ .=+|||||++... ++-.+...+. ..+..||+|++.. .+.+.+...-.+.+.+.+.+.-.
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~---e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~ 452 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLH---NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRI 452 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHH---hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHH
Confidence 2 2378889996321 1222223222 2345677777642 23445556678999999999999
Q ss_pred HHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHh------cC-CCCHHHHHHHHHHH
Q 039535 187 ELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAM------AS-KKTAEEWRHAIEEL 245 (769)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l------~~-~~~~~~~~~~l~~l 245 (769)
+++.+.+........ ++.++.|++.+.+....+.-+...+ .+ .-+.+..+..++.+
T Consensus 453 aIL~kka~~r~l~l~---~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~vL~~~ 515 (617)
T PRK14086 453 AILRKKAVQEQLNAP---PEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDL 515 (617)
T ss_pred HHHHHHHHhcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 999999876654444 4666778777776554443333222 11 12455555555554
No 139
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=2.1e-05 Score=77.93 Aligned_cols=206 Identities=20% Similarity=0.284 Sum_probs=119.7
Q ss_pred cccCCCC--ccccchHHHHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEE
Q 039535 14 ADERPTE--RTLVGLQSQLEQVWRCLI----E---------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIW 78 (769)
Q Consensus 14 ~~~~~~~--~~~vgR~~~~~~l~~~l~----~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w 78 (769)
++..|.. ++.=|-+.+++++.+.+. . +.++=|.+|||||.|||-||++++++- ... |
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~At-----F 213 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DAT-----F 213 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---Cce-----E
Confidence 3444443 345678888888888753 1 345568899999999999999999997 222 2
Q ss_pred EEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhcc-ceEEEEEccccccc------------c----ccc
Q 039535 79 VVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLRE-KRIVLLLDDIWERL------------D----LTK 141 (769)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~llvlDd~~~~~------------~----~~~ 141 (769)
+.+.. .++.+..+ ..+ ..+.+.+++.-+. .+.+|++|++|... + .-+
T Consensus 214 Irvvg----SElVqKYi----GEG--------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmle 277 (406)
T COG1222 214 IRVVG----SELVQKYI----GEG--------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLE 277 (406)
T ss_pred EEecc----HHHHHHHh----ccc--------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHH
Confidence 32222 12222222 111 2344555555544 48999999996320 0 112
Q ss_pred ccccCCC-CCCCCcEEEEEcCchhhh-----cccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHh
Q 039535 142 VGVPLPG-PKNTTSKVVFTTRFFDVC-----GSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKC 215 (769)
Q Consensus 142 ~~~~l~~-~~~~~~~iiittr~~~~~-----~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~ 215 (769)
+...+.+ ......+||.+|...+.+ ..=.-+..++++.-+.+.-.++|.-+........+-+++. +++.+
T Consensus 278 LL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~----la~~~ 353 (406)
T COG1222 278 LLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLEL----LARLT 353 (406)
T ss_pred HHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHH----HHHhc
Confidence 2222220 123467888888655442 2223467899998888888899988887766555544444 55666
Q ss_pred CCcch----HHHHHHHHh--cCCC---CHHHHHHHHHHHhc
Q 039535 216 GGLPL----ALVTIGRAM--ASKK---TAEEWRHAIEELGR 247 (769)
Q Consensus 216 ~G~Pl----ai~~~~~~l--~~~~---~~~~~~~~l~~l~~ 247 (769)
.|.-- |+.+=|++. +..+ +.+++..+.++...
T Consensus 354 ~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 354 EGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred CCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHh
Confidence 66553 333333333 2222 45666665555443
No 140
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.25 E-value=1.8e-05 Score=79.11 Aligned_cols=165 Identities=16% Similarity=0.174 Sum_probs=108.5
Q ss_pred CccccchHHHHHHHHHHhhcCC---ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHH
Q 039535 20 ERTLVGLQSQLEQVWRCLIEES---AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGK 96 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 96 (769)
.+.|.+|+.++..+...+.+.. ...|.|+|.+|.|||.+++++.+.. . ...+|+++-.-.+...++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n---~~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---N---LENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---C---CcceeeehHHhccHHHHHHHHHH
Confidence 4678999999999999997632 3456899999999999999999887 1 24689999999999999999999
Q ss_pred HcCCCCCCCCC-----ccHHHHHHHHHHH--h--ccceEEEEEcccccccccccc--------cccCCCCCCCCcEEEEE
Q 039535 97 RIGLVDDSWKS-----KSVEEKALDIFRS--L--REKRIVLLLDDIWERLDLTKV--------GVPLPGPKNTTSKVVFT 159 (769)
Q Consensus 97 ~l~~~~~~~~~-----~~~~~~~~~l~~~--l--~~~~~llvlDd~~~~~~~~~~--------~~~l~~~~~~~~~iiit 159 (769)
.....+..... ......+..+.++ . +++.+++|+|+++...+.+.. ...++ ....+|++
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~----~~~i~iil 154 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN----EPTIVIIL 154 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC----CCceEEEE
Confidence 98632211111 1112223333331 1 346899999999866554432 22222 12333333
Q ss_pred cCc---hhhhcccC--CCceEEeecCCHHHHHHHHHHHhc
Q 039535 160 TRF---FDVCGSME--AHRTFEVACLSEKDAWELFQEKVG 194 (769)
Q Consensus 160 tr~---~~~~~~~~--~~~~~~l~~l~~~e~~~l~~~~~~ 194 (769)
+-. .......+ ....+.++.++.+|..+++.+--.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p 194 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNP 194 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCc
Confidence 332 22222222 234678999999999999976543
No 141
>PLN03150 hypothetical protein; Provisional
Probab=98.24 E-value=2.2e-06 Score=97.05 Aligned_cols=106 Identities=24% Similarity=0.327 Sum_probs=71.3
Q ss_pred CceEEEeecccchhcccCcccccCCcccEEEeeccCccccc-cCCccccCCCCCCEEeccCCCCC-ccchhhhcCCCCce
Q 039535 404 HLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVL-KLPLGMSKLGSLELLDISHSSIE-ELPEELKLLVNLKC 481 (769)
Q Consensus 404 ~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~-~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~ 481 (769)
.++.|+|++|.....+|.. +.++++|+.|+|++| .+. .+|..++.+++|++|+|++|.++ .+|..++.+++|+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N---~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGN---SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEEECCCCCccccCCHH-HhCCCCCCEEECCCC---cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 3667777766633444443 677777777777777 333 56667777777777777777777 67777777777777
Q ss_pred eeccCCCcccccchHHhcCCCcCcEEEeeccC
Q 039535 482 LNLRWTDVLNKIPRQLISNLSRVRVLRMFATG 513 (769)
Q Consensus 482 L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~ 513 (769)
|++++|...+.+|..+...+.++..+++.+|.
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEecCCc
Confidence 77777776667776632223456666666654
No 142
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.23 E-value=8.8e-06 Score=88.75 Aligned_cols=181 Identities=21% Similarity=0.192 Sum_probs=105.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLR 122 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 122 (769)
..++|+|++|+|||+|+++++++.. .......+++++. ..+...+...+... .. ..+.+.++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~-~~~~~~~v~yi~~------~~~~~~~~~~~~~~-------~~----~~~~~~~~ 210 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYIL-EKNPNAKVVYVTS------EKFTNDFVNALRNN-------TM----EEFKEKYR 210 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEEH------HHHHHHHHHHHHcC-------cH----HHHHHHHh
Confidence 4688999999999999999999983 2222345667653 33344444443211 11 22333333
Q ss_pred cceEEEEEcccccccc----cccccccCCCCCCCCcEEEEEcCchh---------hhcccCCCceEEeecCCHHHHHHHH
Q 039535 123 EKRIVLLLDDIWERLD----LTKVGVPLPGPKNTTSKVVFTTRFFD---------VCGSMEAHRTFEVACLSEKDAWELF 189 (769)
Q Consensus 123 ~~~~llvlDd~~~~~~----~~~~~~~l~~~~~~~~~iiittr~~~---------~~~~~~~~~~~~l~~l~~~e~~~l~ 189 (769)
..-+||+||++.... .+.+...+......+..+++|+.... +.+.+.....+++.+.+.++..+++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 234889999964211 11221111101112344666665321 2334445568999999999999999
Q ss_pred HHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHhc-------CCCCHHHHHHHHHHH
Q 039535 190 QEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAMA-------SKKTAEEWRHAIEEL 245 (769)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~-------~~~~~~~~~~~l~~l 245 (769)
.+.+.......+ ++.++.|++.++|....+.-+...+. ..-+.+.....++.+
T Consensus 290 ~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 290 KKKAEEEGIDLP---DEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHcCCCCC---HHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 998865442333 46778899998887764443322221 113566666766655
No 143
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=3.8e-05 Score=78.63 Aligned_cols=198 Identities=16% Similarity=0.141 Sum_probs=110.2
Q ss_pred ccccchHHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhhhhcc------------CCCCEEEEEEecCCCCH
Q 039535 21 RTLVGLQSQLEQVWRCLIEES-AGIIGLYGMGGVGKTTLLIHINNKFLESR------------TNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------------~~~~~~~w~~~~~~~~~ 87 (769)
++++|.+...+.+...+.+++ .+...++|+.|+||+++|..+++.+--.. ...+...|+.-......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 468999999999999998776 46889999999999999999988862111 11222344421100000
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-----ccceEEEEEccccccc--ccccccccCCCCCCCCcEEEEEc
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-----REKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVFTT 160 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iiitt 160 (769)
...-...+...+..........+++ ++.+.+.+ .+.+-++|+|+++... ....+...+. .......|++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LE-EPp~~~fILi~~ 161 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLE-EPGNGTLILIAP 161 (314)
T ss_pred cccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHh-CCCCCeEEEEEC
Confidence 0000011111111111001122222 33444444 3456789999996542 2222322222 112333444444
Q ss_pred Cchhhhccc-CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 161 RFFDVCGSM-EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 161 r~~~~~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
+...+...+ ...+.+.+.+++.++..+++.+....... . .....++..++|.|..+..+.
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~--~----~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL--N----INFPELLALAQGSPGAAIANI 222 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc--h----hHHHHHHHHcCCCHHHHHHHH
Confidence 444443332 44678999999999999999987532220 1 113477889999997665444
No 144
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.22 E-value=6.4e-05 Score=80.85 Aligned_cols=179 Identities=12% Similarity=0.100 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLR 122 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 122 (769)
..+.|+|++|+|||+|++++++.+.+ ....+++++ ...+...+...+... . ...+.+..+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~---~~~~v~yi~------~~~f~~~~~~~l~~~-------~----~~~f~~~~~ 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRE---SGGKILYVR------SELFTEHLVSAIRSG-------E----MQRFRQFYR 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHH---cCCCEEEee------HHHHHHHHHHHHhcc-------h----HHHHHHHcc
Confidence 46889999999999999999999832 234456664 334444555444311 1 122333333
Q ss_pred cceEEEEEcccccccc----cccccccCCCCCCCCcEEEEEcCc-h--------hhhcccCCCceEEeecCCHHHHHHHH
Q 039535 123 EKRIVLLLDDIWERLD----LTKVGVPLPGPKNTTSKVVFTTRF-F--------DVCGSMEAHRTFEVACLSEKDAWELF 189 (769)
Q Consensus 123 ~~~~llvlDd~~~~~~----~~~~~~~l~~~~~~~~~iiittr~-~--------~~~~~~~~~~~~~l~~l~~~e~~~l~ 189 (769)
..-++++||++.... .+.+...+......+..||+|+.. + .+.+++.....+.+.+++.++..+++
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 334788899954321 111211111001124467777743 2 22334445578999999999999999
Q ss_pred HHHhccccCCCchhHHHHHHHHHHHhCCcc-hHHHHHHHH--------hcC-CCCHHHHHHHHHHH
Q 039535 190 QEKVGEETLKSDHDIAELAQTVAKKCGGLP-LALVTIGRA--------MAS-KKTAEEWRHAIEEL 245 (769)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-lai~~~~~~--------l~~-~~~~~~~~~~l~~l 245 (769)
.+.+.......+ ++....|+..+.|.- -....+.+. +.+ .-+.+..+..++..
T Consensus 281 ~~k~~~~~~~l~---~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 281 ERKAEALSIRIE---ETALDFLIEALSSNVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDV 343 (445)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 998866543333 355666776666543 322222222 112 13566666666654
No 145
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.21 E-value=5.7e-05 Score=81.43 Aligned_cols=204 Identities=14% Similarity=0.109 Sum_probs=131.0
Q ss_pred CCccccchHHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHhhhhhcc--CCCC--EEEEEEecCCCCHHH
Q 039535 19 TERTLVGLQSQLEQVWRCLIE-----ESAGIIGLYGMGGVGKTTLLIHINNKFLESR--TNFD--FVIWVVVSKDPRLEK 89 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~~~--~~~w~~~~~~~~~~~ 89 (769)
.+..+-+|+.+..+|.+.+.. +..+.+.|.|-+|+|||+.+..+.+.+++.. ...+ .++.++.-.-..+.+
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPRE 473 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHH
Confidence 356678999999999988763 3345899999999999999999999885321 1112 345566556677999
Q ss_pred HHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-----ccceEEEEEcccccccc--cccccccCCCCCCCCcEEEEEc-C
Q 039535 90 IQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-----REKRIVLLLDDIWERLD--LTKVGVPLPGPKNTTSKVVFTT-R 161 (769)
Q Consensus 90 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~~~--~~~~~~~l~~~~~~~~~iiitt-r 161 (769)
++..|...+.. ....+......+..++ ..+.+++++|++|..-. -+-+...+.+...++++++|.+ -
T Consensus 474 ~Y~~I~~~lsg-----~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 474 IYEKIWEALSG-----ERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIA 548 (767)
T ss_pred HHHHHHHhccc-----CcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEec
Confidence 99999999876 4455555566666555 23568999999975321 2222222332234455544432 2
Q ss_pred ch-----hh-----hcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHH
Q 039535 162 FF-----DV-----CGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRA 228 (769)
Q Consensus 162 ~~-----~~-----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 228 (769)
+. .. .+.+ ....+.+.+++..+..+++..++...........+=++.+|+...|..-.|+....+.
T Consensus 549 NTmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred ccccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 21 11 1222 2356899999999999999998866542222233344566777677666666555443
No 146
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.21 E-value=1e-06 Score=89.31 Aligned_cols=294 Identities=19% Similarity=0.179 Sum_probs=183.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRS 120 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 120 (769)
..+.|.++|++|+||||++-+++. .. ....+.+.++.+.+..+...+...+...++.... .-+.....+...
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-----~g~~~~~~~~~~ 84 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-----PGDSAVDTLVRR 84 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhcccccc-----cchHHHHHHHHH
Confidence 457899999999999999999988 41 3444577788888888888888888887776431 223344456666
Q ss_pred hccceEEEEEcccccccc-cccccccCCCCCCCCcEEEEEcCchhhhcccCCCceEEeecCCHH-HHHHHHHHHhcccc-
Q 039535 121 LREKRIVLLLDDIWERLD-LTKVGVPLPGPKNTTSKVVFTTRFFDVCGSMEAHRTFEVACLSEK-DAWELFQEKVGEET- 197 (769)
Q Consensus 121 l~~~~~llvlDd~~~~~~-~~~~~~~l~~~~~~~~~iiittr~~~~~~~~~~~~~~~l~~l~~~-e~~~l~~~~~~~~~- 197 (769)
..++|.++|+||..+..+ -......+. .......++.|+|..... .+.....+++++.. ++.++|...+....
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all-~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALL-GACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHH-ccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhcc
Confidence 778899999999854321 111111222 233355688888865442 23456677777754 68888766553221
Q ss_pred -CCCchhHHHHHHHHHHHhCCcchHHHHHHHHhcCCCC---HHHHHHHHHHHhcccCCCCCCccchhhHHHhhhcCCCcc
Q 039535 198 -LKSDHDIAELAQTVAKKCGGLPLALVTIGRAMASKKT---AEEWRHAIEELGRSASEFPGLGKEVYPVLKFSYDSLPNE 273 (769)
Q Consensus 198 -~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~---~~~~~~~l~~l~~~~~~~~~~~~~i~~~l~~~~~~L~~~ 273 (769)
..........+..|.+..+|.|++|..+++..+.... .+-+.+.+..+..........+......+.+||.-|..
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg- 239 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG- 239 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh-
Confidence 1111222456778999999999999999999877422 23344455555555333333345677888999988877
Q ss_pred ccchhhceecccCCCccccHHHHHHHHhhcCccccCcccccccchhhhHHHHhhhcceeee---cCCeEEEehhHHHHHH
Q 039535 274 TIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEESNRFGAENRGYYIVGTLVHTCLLEEI---EDDKVKMHDVVRDMAL 350 (769)
Q Consensus 274 ~~~~~~~~~~~~p~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~---~~~~~~~h~lv~~~~~ 350 (769)
..+..+..++.|...+... ...|.+-|-... ...-.....+-.+++.+++... ....|+.-+..+.|+.
T Consensus 240 we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yal 311 (414)
T COG3903 240 WERALFGRLAVFVGGFDLG----LALAVAAGADVD----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYAL 311 (414)
T ss_pred HHHHHhcchhhhhhhhccc----HHHHHhcCCccc----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 6677777788876654433 234444333221 1112233456677777777554 3345666666666665
Q ss_pred HHHhh
Q 039535 351 WIACE 355 (769)
Q Consensus 351 ~~~~~ 355 (769)
....+
T Consensus 312 aeL~r 316 (414)
T COG3903 312 AELHR 316 (414)
T ss_pred HHHHh
Confidence 54433
No 147
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.21 E-value=3.2e-05 Score=78.33 Aligned_cols=156 Identities=13% Similarity=0.103 Sum_probs=84.3
Q ss_pred ccccchHHHHHHHHHHhh--------c--C-----CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCC
Q 039535 21 RTLVGLQSQLEQVWRCLI--------E--E-----SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDP 85 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~--------~--~-----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~ 85 (769)
..++|-++..+++.++.. . + ....+.++|++|+|||++|+.+++.+.+. ......-++.+..
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~-g~~~~~~~v~v~~-- 98 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRL-GYVRKGHLVSVTR-- 98 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHc-CCcccceEEEecH--
Confidence 468998887777755421 0 1 12368899999999999999988887321 1111112333321
Q ss_pred CHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccc-----------cccccccccCCCCCCCCc
Q 039535 86 RLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWER-----------LDLTKVGVPLPGPKNTTS 154 (769)
Q Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-----------~~~~~~~~~l~~~~~~~~ 154 (769)
.++ ...+... . .. ....+.+... .-++++|+++.. .....+...+. ....+.
T Consensus 99 --~~l----~~~~~g~----~---~~-~~~~~~~~a~--~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le-~~~~~~ 161 (284)
T TIGR02880 99 --DDL----VGQYIGH----T---AP-KTKEILKRAM--GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME-NQRDDL 161 (284)
T ss_pred --HHH----hHhhccc----c---hH-HHHHHHHHcc--CcEEEEechhhhccCCCccchHHHHHHHHHHHHh-cCCCCE
Confidence 122 2222111 1 11 1222333332 258899999632 11222333333 333455
Q ss_pred EEEEEcCchhhhcc--c------CCCceEEeecCCHHHHHHHHHHHhccc
Q 039535 155 KVVFTTRFFDVCGS--M------EAHRTFEVACLSEKDAWELFQEKVGEE 196 (769)
Q Consensus 155 ~iiittr~~~~~~~--~------~~~~~~~l~~l~~~e~~~l~~~~~~~~ 196 (769)
+||+++........ . .-...+++++++.+|..+++...+...
T Consensus 162 ~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 162 VVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ 211 (284)
T ss_pred EEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence 66666653322110 0 113569999999999999998887553
No 148
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.20 E-value=1.2e-05 Score=94.06 Aligned_cols=155 Identities=15% Similarity=0.193 Sum_probs=93.2
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCC---CCEEEEEEecCCCCHHHHHHHHHHH
Q 039535 21 RTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTN---FDFVIWVVVSKDPRLEKIQEDIGKR 97 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~---~~~~~w~~~~~~~~~~~~~~~l~~~ 97 (769)
.+++||+++++++.+.|.......++++|++|+|||++|+.++++..+.... -...+|. + +...+ ..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l----~a- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL----LA- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH----hc-
Confidence 5689999999999999976555677899999999999999999998321111 1123332 1 11111 11
Q ss_pred cCCCCCCCCCccHHHHHHHHHHHhc-cceEEEEEcccccccc---------cccc-cccCCCCCCCCcEEEEEcCchhhh
Q 039535 98 IGLVDDSWKSKSVEEKALDIFRSLR-EKRIVLLLDDIWERLD---------LTKV-GVPLPGPKNTTSKVVFTTRFFDVC 166 (769)
Q Consensus 98 l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~llvlDd~~~~~~---------~~~~-~~~l~~~~~~~~~iiittr~~~~~ 166 (769)
... ...+.++.++.+.+... .++.++++|+++.... ...+ ...+. ....++|.+|......
T Consensus 249 --g~~---~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~---rg~l~~IgaTt~~ey~ 320 (821)
T CHL00095 249 --GTK---YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA---RGELQCIGATTLDEYR 320 (821)
T ss_pred --cCC---CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh---CCCcEEEEeCCHHHHH
Confidence 110 22345556666665553 4679999999953211 1111 12221 2234556555554331
Q ss_pred c-------ccCCCceEEeecCCHHHHHHHHHHHh
Q 039535 167 G-------SMEAHRTFEVACLSEKDAWELFQEKV 193 (769)
Q Consensus 167 ~-------~~~~~~~~~l~~l~~~e~~~l~~~~~ 193 (769)
. .....+.+.+...+.++...++....
T Consensus 321 ~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 321 KHIEKDPALERRFQPVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred HHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHH
Confidence 1 11234678889999999988887543
No 149
>CHL00181 cbbX CbbX; Provisional
Probab=98.19 E-value=4.5e-05 Score=77.14 Aligned_cols=157 Identities=12% Similarity=0.142 Sum_probs=84.5
Q ss_pred ccccchHHHHHHHHHHhh--------c-------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCC
Q 039535 21 RTLVGLQSQLEQVWRCLI--------E-------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDP 85 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~--------~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~ 85 (769)
++++|-+...+++.++.. . .....+.++|++|+|||++|+.+++.+.. ...-...-|+.++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~-~g~~~~~~~~~v~--- 98 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYK-LGYIKKGHLLTVT--- 98 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHH-cCCCCCCceEEec---
Confidence 357887777776654421 1 12235889999999999999999988622 1111111133333
Q ss_pred CHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccc-----------cccccccccCCCCCCCCc
Q 039535 86 RLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWER-----------LDLTKVGVPLPGPKNTTS 154 (769)
Q Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-----------~~~~~~~~~l~~~~~~~~ 154 (769)
...+...+. + . . .. ....+.+...+ -++++|+++.. +....+...+. ......
T Consensus 99 -~~~l~~~~~---g-~----~---~~-~~~~~l~~a~g--gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me-~~~~~~ 162 (287)
T CHL00181 99 -RDDLVGQYI---G-H----T---AP-KTKEVLKKAMG--GVLFIDEAYYLYKPDNERDYGSEAIEILLQVME-NQRDDL 162 (287)
T ss_pred -HHHHHHHHh---c-c----c---hH-HHHHHHHHccC--CEEEEEccchhccCCCccchHHHHHHHHHHHHh-cCCCCE
Confidence 112222111 1 0 0 01 11222332222 48999999642 11122223333 333456
Q ss_pred EEEEEcCchhhhcc------c--CCCceEEeecCCHHHHHHHHHHHhcccc
Q 039535 155 KVVFTTRFFDVCGS------M--EAHRTFEVACLSEKDAWELFQEKVGEET 197 (769)
Q Consensus 155 ~iiittr~~~~~~~------~--~~~~~~~l~~l~~~e~~~l~~~~~~~~~ 197 (769)
.||+++........ + .-...+.+++++.+|..+++...+....
T Consensus 163 ~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~ 213 (287)
T CHL00181 163 VVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQ 213 (287)
T ss_pred EEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhc
Confidence 67777654322110 0 1235799999999999999998876544
No 150
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.18 E-value=3.8e-05 Score=82.93 Aligned_cols=159 Identities=16% Similarity=0.208 Sum_probs=90.3
Q ss_pred ccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhcc--CCCCEEEEEEecCCC
Q 039535 21 RTLVGLQSQLEQVWRCLIE-------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESR--TNFDFVIWVVVSKDP 85 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~~~~~~w~~~~~~~ 85 (769)
.++.|.+.+++++.+.+.- ...+-+.++||+|+|||++|+++++.+.... .......++++....
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 5678899999999887531 1345688999999999999999999982110 011233444433211
Q ss_pred CHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-----ccceEEEEEccccccc---------c-----cccccccC
Q 039535 86 RLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-----REKRIVLLLDDIWERL---------D-----LTKVGVPL 146 (769)
Q Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~~---------~-----~~~~~~~l 146 (769)
+ +... ....+..+..+++.. .+++++++||+++... + +..+...+
T Consensus 262 ----L----l~ky--------vGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 262 ----L----LNKY--------VGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred ----h----cccc--------cchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 1 1000 001112222222222 3468999999997421 1 11222222
Q ss_pred CCCC-CCCcEEEEEcCchhhh-----cccCCCceEEeecCCHHHHHHHHHHHhcc
Q 039535 147 PGPK-NTTSKVVFTTRFFDVC-----GSMEAHRTFEVACLSEKDAWELFQEKVGE 195 (769)
Q Consensus 147 ~~~~-~~~~~iiittr~~~~~-----~~~~~~~~~~l~~l~~~e~~~l~~~~~~~ 195 (769)
.+.. ..+..||.||...... ..-.-+..++++..+.++..++|..++..
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 2111 2344556566544331 11123456999999999999999998754
No 151
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.18 E-value=2.1e-05 Score=83.62 Aligned_cols=171 Identities=19% Similarity=0.264 Sum_probs=96.1
Q ss_pred ccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 21 RTLVGLQSQLEQVWRCLIE-------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
.++.|.+.+++++.+++.- ...+.+.|+|++|+|||++|++++++. ...| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f-----i~V~~s--- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF-----LRVVGS--- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE-----EEEecc---
Confidence 4578999999998887631 134568899999999999999999987 2222 111111
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEcccccccc----------------cccccccCCC-C
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERLD----------------LTKVGVPLPG-P 149 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~~----------------~~~~~~~l~~-~ 149 (769)
.+.. .. .... ...+..+++.. ...+.+++||+++.... +..+...+.+ .
T Consensus 252 -eL~~----k~-------~Ge~-~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 252 -ELIQ----KY-------LGDG-PKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred -hhhh----hh-------cchH-HHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 1111 10 0001 11222233222 45678999999863210 0111111110 1
Q ss_pred CCCCcEEEEEcCchhhhcc-----cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcc
Q 039535 150 KNTTSKVVFTTRFFDVCGS-----MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLP 219 (769)
Q Consensus 150 ~~~~~~iiittr~~~~~~~-----~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 219 (769)
...+..||.||........ -.....++++..+.++..++|..+........+... ..++..+.|.-
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl----~~la~~t~g~s 389 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL----EEFIMAKDELS 389 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH----HHHHHhcCCCC
Confidence 1235677777775443221 123467999999999999999988755443333222 34444554433
No 152
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.15 E-value=7.4e-05 Score=77.16 Aligned_cols=198 Identities=19% Similarity=0.236 Sum_probs=127.1
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHH-HHHHhhhhhccCCCCEEEEEEecC---CCCHHHHHHHHHHHcCCC
Q 039535 26 LQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLL-IHINNKFLESRTNFDFVIWVVVSK---DPRLEKIQEDIGKRIGLV 101 (769)
Q Consensus 26 R~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa-~~~~~~~~~~~~~~~~~~w~~~~~---~~~~~~~~~~l~~~l~~~ 101 (769)
|.+.+++|..||.......|+|.||-|+||+.|+ .++.++. ..+..++|.+ ..+-..+.+.++.++|--
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 6778999999998777778999999999999999 6666554 1277777654 245566677777776532
Q ss_pred C----------------------CCCCCccHHHHHHHHH------------------------------HHhccceEEEE
Q 039535 102 D----------------------DSWKSKSVEEKALDIF------------------------------RSLREKRIVLL 129 (769)
Q Consensus 102 ~----------------------~~~~~~~~~~~~~~l~------------------------------~~l~~~~~llv 129 (769)
+ ....+.+.+..++.+. +.-...+-+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 1 1112233333322222 11123467999
Q ss_pred Ecccccc-----------cccccccccCCCCCCCCcEEEEEcCchhhhc----cc--CCCceEEeecCCHHHHHHHHHHH
Q 039535 130 LDDIWER-----------LDLTKVGVPLPGPKNTTSKVVFTTRFFDVCG----SM--EAHRTFEVACLSEKDAWELFQEK 192 (769)
Q Consensus 130 lDd~~~~-----------~~~~~~~~~l~~~~~~~~~iiittr~~~~~~----~~--~~~~~~~l~~l~~~e~~~l~~~~ 192 (769)
+|++... .+|... +- ..+-.+||+.|.+..... .+ .....+.+.-.+.+.|.+++..+
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~---Lv--~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAAS---LV--QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHH---HH--hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 9999432 123322 21 223456888777654322 22 34578899999999999999998
Q ss_pred hccccCC------------Cc-----hhHHHHHHHHHHHhCCcchHHHHHHHHhcCCCCH
Q 039535 193 VGEETLK------------SD-----HDIAELAQTVAKKCGGLPLALVTIGRAMASKKTA 235 (769)
Q Consensus 193 ~~~~~~~------------~~-----~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~ 235 (769)
+...... .+ ....+-....++..||--.-+..+++.++...++
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 8654100 00 1223345677788999999999999999876554
No 153
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.15 E-value=1.9e-05 Score=92.23 Aligned_cols=155 Identities=15% Similarity=0.182 Sum_probs=92.0
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccC----CCCEEEEEEecCCCCHHHHHHHHHH
Q 039535 21 RTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRT----NFDFVIWVVVSKDPRLEKIQEDIGK 96 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----~~~~~~w~~~~~~~~~~~~~~~l~~ 96 (769)
.++|||+.++.++++.|.......++++|++|+|||++|+.++++..+... ....+++++.+. +..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~a---- 247 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LVA---- 247 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hhh----
Confidence 569999999999999997666667889999999999999999999732110 112333332221 110
Q ss_pred HcCCCCCCCCCccHHHHHHHHHHHh--ccceEEEEEcccccccc---------ccc-ccccCCCCCCCCcEEEEEcCchh
Q 039535 97 RIGLVDDSWKSKSVEEKALDIFRSL--REKRIVLLLDDIWERLD---------LTK-VGVPLPGPKNTTSKVVFTTRFFD 164 (769)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~~~~llvlDd~~~~~~---------~~~-~~~~l~~~~~~~~~iiittr~~~ 164 (769)
.. ......++.++.+.+.+ .+.++++++|+++.... ... +...+ ..+..++|-+|...+
T Consensus 248 g~------~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l---~~g~l~~IgaTt~~e 318 (857)
T PRK10865 248 GA------KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL---ARGELHCVGATTLDE 318 (857)
T ss_pred cc------chhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh---hcCCCeEEEcCCCHH
Confidence 00 01223344444444443 34689999999964321 111 22222 223445555555433
Q ss_pred hh-------cccCCCceEEeecCCHHHHHHHHHHHhc
Q 039535 165 VC-------GSMEAHRTFEVACLSEKDAWELFQEKVG 194 (769)
Q Consensus 165 ~~-------~~~~~~~~~~l~~l~~~e~~~l~~~~~~ 194 (769)
.. +.....+.+.+...+.++...+++....
T Consensus 319 ~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 319 YRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKE 355 (857)
T ss_pred HHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhh
Confidence 21 1112345678888899999998876553
No 154
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.13 E-value=3.5e-05 Score=90.48 Aligned_cols=155 Identities=12% Similarity=0.163 Sum_probs=92.3
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccC----CCCEEEEEEecCCCCHHHHHHHHHH
Q 039535 21 RTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRT----NFDFVIWVVVSKDPRLEKIQEDIGK 96 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----~~~~~~w~~~~~~~~~~~~~~~l~~ 96 (769)
.++|||+.++.++++.|.......++++|++|+|||++|+.++++...... ....++.++. ..+. .
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~------~~l~----a 242 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM------GALI----A 242 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH------HHHh----h
Confidence 568999999999999997666667789999999999999999998732110 1112232221 1111 0
Q ss_pred HcCCCCCCCCCccHHHHHHHHHHHhc--cceEEEEEcccccccc---------ccc-ccccCCCCCCCCcEEEEEcCchh
Q 039535 97 RIGLVDDSWKSKSVEEKALDIFRSLR--EKRIVLLLDDIWERLD---------LTK-VGVPLPGPKNTTSKVVFTTRFFD 164 (769)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~~~---------~~~-~~~~l~~~~~~~~~iiittr~~~ 164 (769)
.. ......+..++.+.+.+. +++.++++|+++.... ... +...+ ......+|-+|....
T Consensus 243 ~~------~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l---~~g~i~~IgaTt~~e 313 (852)
T TIGR03346 243 GA------KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL---ARGELHCIGATTLDE 313 (852)
T ss_pred cc------hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh---hcCceEEEEeCcHHH
Confidence 00 011234445555555552 4689999999964311 111 12222 122344555554433
Q ss_pred hh-------cccCCCceEEeecCCHHHHHHHHHHHhc
Q 039535 165 VC-------GSMEAHRTFEVACLSEKDAWELFQEKVG 194 (769)
Q Consensus 165 ~~-------~~~~~~~~~~l~~l~~~e~~~l~~~~~~ 194 (769)
.- +.....+.+.++..+.++...++.....
T Consensus 314 ~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~ 350 (852)
T TIGR03346 314 YRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKE 350 (852)
T ss_pred HHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHH
Confidence 21 1112346789999999999999877643
No 155
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.10 E-value=2.3e-05 Score=89.30 Aligned_cols=155 Identities=15% Similarity=0.234 Sum_probs=92.5
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCC---CEEEEEEecCCCCHHHHHHHHHHH
Q 039535 21 RTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNF---DFVIWVVVSKDPRLEKIQEDIGKR 97 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~---~~~~w~~~~~~~~~~~~~~~l~~~ 97 (769)
.+++||++++.++.+.|.......+.++|++|+|||++|+.++++.......+ ...+|.. +...+ ..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la- 255 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA- 255 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc-
Confidence 46899999999999999765556678999999999999999998863221111 2233321 11111 10
Q ss_pred cCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEccccccc--------c--ccc-ccccCCCCCCCCcEEEEEcCchhh
Q 039535 98 IGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERL--------D--LTK-VGVPLPGPKNTTSKVVFTTRFFDV 165 (769)
Q Consensus 98 l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~--------~--~~~-~~~~l~~~~~~~~~iiittr~~~~ 165 (769)
.. ....+.+..++.+.+.+ ...+.++++|+++... + ... +...+. .....+|-+|...+.
T Consensus 256 --G~---~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~---~g~i~vIgATt~~E~ 327 (758)
T PRK11034 256 --GT---KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS---SGKIRVIGSTTYQEF 327 (758)
T ss_pred --cc---chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh---CCCeEEEecCChHHH
Confidence 00 02224444555555544 3456799999996421 1 111 122222 223445555554332
Q ss_pred h-------cccCCCceEEeecCCHHHHHHHHHHHh
Q 039535 166 C-------GSMEAHRTFEVACLSEKDAWELFQEKV 193 (769)
Q Consensus 166 ~-------~~~~~~~~~~l~~l~~~e~~~l~~~~~ 193 (769)
. +..+..+.+.+++.+.+++.+++....
T Consensus 328 ~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1 111234679999999999999998765
No 156
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=2.3e-05 Score=84.75 Aligned_cols=157 Identities=18% Similarity=0.226 Sum_probs=96.1
Q ss_pred CccccchHHHHHHHHHHhh-----c-CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHH
Q 039535 20 ERTLVGLQSQLEQVWRCLI-----E-ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQED 93 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~-----~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 93 (769)
+.+.+|-++..+++++.|- + -+.++++++||||+|||+|++.+++.+ ...|- -+.++.-.+-.++--
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkfv---R~sLGGvrDEAEIRG- 394 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKFV---RISLGGVRDEAEIRG- 394 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCEE---EEecCccccHHHhcc-
Confidence 5678999999999999874 1 245789999999999999999999998 33332 233333333332211
Q ss_pred HHHHcCCCCCCCCCccHHHHHHHHHHHh---ccceEEEEEcccccc------------------cccccccccC-CCCCC
Q 039535 94 IGKRIGLVDDSWKSKSVEEKALDIFRSL---REKRIVLLLDDIWER------------------LDLTKVGVPL-PGPKN 151 (769)
Q Consensus 94 l~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~~~~llvlDd~~~~------------------~~~~~~~~~l-~~~~~ 151 (769)
+.+..+..+..++.+.+ +.+.-+++||++|.. ++-..|..++ .-..+
T Consensus 395 -----------HRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yD 463 (782)
T COG0466 395 -----------HRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYD 463 (782)
T ss_pred -----------ccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccc
Confidence 12233333344444444 345679999999632 2222332222 11111
Q ss_pred -CCcEEEEEcCchh-h-hcccCCCceEEeecCCHHHHHHHHHHHhc
Q 039535 152 -TTSKVVFTTRFFD-V-CGSMEAHRTFEVACLSEKDAWELFQEKVG 194 (769)
Q Consensus 152 -~~~~iiittr~~~-~-~~~~~~~~~~~l~~l~~~e~~~l~~~~~~ 194 (769)
+...+|.|+.+-+ + ...+...+++++.+++++|-.++..+++.
T Consensus 464 LS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 464 LSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred hhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 2334444444432 2 23334567999999999999999988773
No 157
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.10 E-value=7.7e-05 Score=78.88 Aligned_cols=171 Identities=19% Similarity=0.259 Sum_probs=96.9
Q ss_pred ccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 21 RTLVGLQSQLEQVWRCLIE-------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
.++.|-+..++++.+.+.- ...+-+.++|++|+|||++|+++++.. ...| +.+. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f---i~i~--~---- 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF---IRVV--G---- 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEe--h----
Confidence 5688999998888876531 234678899999999999999999987 2222 1111 1
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEccccccc------------c----cccccccCCC-C
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERL------------D----LTKVGVPLPG-P 149 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~------------~----~~~~~~~l~~-~ 149 (769)
..+ ..... ... ...+..+++.. ...+.+|++|+++... + +..+...+.+ .
T Consensus 213 s~l----~~k~~-------ge~-~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 213 SEF----VQKYL-------GEG-PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred HHH----HHHhc-------chh-HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 111 11110 001 11223333333 4568999999986321 0 1111122211 1
Q ss_pred CCCCcEEEEEcCchhhh-----cccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcc
Q 039535 150 KNTTSKVVFTTRFFDVC-----GSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLP 219 (769)
Q Consensus 150 ~~~~~~iiittr~~~~~-----~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 219 (769)
...+..||.||...... ..-.-+..+.++..+.++..+++..+........+.+ ...++..+.|..
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 22356677777654332 1112346789999999999999987775544333322 334555565543
No 158
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.10 E-value=6e-06 Score=84.40 Aligned_cols=101 Identities=17% Similarity=0.191 Sum_probs=64.4
Q ss_pred HHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCC--CHHHHHHHHHHHcCCCCCCCCCc
Q 039535 32 QVWRCLIE-ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDP--RLEKIQEDIGKRIGLVDDSWKSK 108 (769)
Q Consensus 32 ~l~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~ 108 (769)
++++.+.. ++.....|+|++|+||||||+++++... .. +|+.++|+.+.... ++.++++.+...+-.......+.
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~-~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~ 235 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSIT-TN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAE 235 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHH-hh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHH
Confidence 45555543 4556788999999999999999999983 22 89999999887765 77778877763221111100110
Q ss_pred -cHH--HHHHHHHHH--hccceEEEEEcccc
Q 039535 109 -SVE--EKALDIFRS--LREKRIVLLLDDIW 134 (769)
Q Consensus 109 -~~~--~~~~~l~~~--l~~~~~llvlDd~~ 134 (769)
... ...-...++ ..+++++|++|++.
T Consensus 236 ~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 236 RHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 000 011111222 26789999999994
No 159
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=4e-05 Score=80.98 Aligned_cols=171 Identities=21% Similarity=0.226 Sum_probs=100.5
Q ss_pred ccccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHH
Q 039535 21 RTLVGLQSQLEQVWRCLIE------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLE 88 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 88 (769)
+++=|-+..++++.+.+.. ...+-|.+|||+|+|||.||++++.++ . +=++.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~-----vPf~~isAp---- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---G-----VPFLSISAP---- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc---C-----CceEeecch----
Confidence 5677889999888887642 134567899999999999999999998 2 223333222
Q ss_pred HHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEccccccc----------------ccccccccCCCC--
Q 039535 89 KIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERL----------------DLTKVGVPLPGP-- 149 (769)
Q Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~----------------~~~~~~~~l~~~-- 149 (769)
++...+.. +-++.++.+++.- +.-++++++|++|... ++-..+..+...
T Consensus 258 ----eivSGvSG--------ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~ 325 (802)
T KOG0733|consen 258 ----EIVSGVSG--------ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKT 325 (802)
T ss_pred ----hhhcccCc--------ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccccc
Confidence 23333222 2244455555544 4569999999997321 111112222211
Q ss_pred CCCCcEEEEEc-Cchhhhccc---C-CCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcc
Q 039535 150 KNTTSKVVFTT-RFFDVCGSM---E-AHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLP 219 (769)
Q Consensus 150 ~~~~~~iiitt-r~~~~~~~~---~-~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 219 (769)
.+.+..||-+| |+..+-..+ + -++.|.++--++.+-.+++...+..-....+-++ .+|++.+-|.-
T Consensus 326 ~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~----~qlA~lTPGfV 396 (802)
T KOG0733|consen 326 KGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDF----KQLAKLTPGFV 396 (802)
T ss_pred CCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCH----HHHHhcCCCcc
Confidence 13344444444 544332222 2 2467899999999988998887764443333333 35666665543
No 160
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=0.00012 Score=75.54 Aligned_cols=94 Identities=12% Similarity=0.120 Sum_probs=57.2
Q ss_pred ceEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCch-hhhcc-cCCCceEEeecCCHHHHHHHHHHHhccccCC
Q 039535 124 KRIVLLLDDIWER--LDLTKVGVPLPGPKNTTSKVVFTTRFF-DVCGS-MEAHRTFEVACLSEKDAWELFQEKVGEETLK 199 (769)
Q Consensus 124 ~~~llvlDd~~~~--~~~~~~~~~l~~~~~~~~~iiittr~~-~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~ 199 (769)
++-++|+|+++.. .....+...+. ....++.+|++|.+. .+... ....+.+.+.+++.+++.+++.+......
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LE-EPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~~-- 182 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLE-EPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPESD-- 182 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHh-CCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccCC--
Confidence 3445577999753 22223322232 223456666766654 33333 23467899999999999999987642111
Q ss_pred CchhHHHHHHHHHHHhCCcchHHHHH
Q 039535 200 SDHDIAELAQTVAKKCGGLPLALVTI 225 (769)
Q Consensus 200 ~~~~~~~~~~~i~~~~~G~Plai~~~ 225 (769)
.+.+..++..++|.|.....+
T Consensus 183 -----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 -----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -----hHHHHHHHHHcCCCHHHHHHH
Confidence 233557788999999765444
No 161
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.03 E-value=8.2e-05 Score=77.28 Aligned_cols=186 Identities=18% Similarity=0.160 Sum_probs=107.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL 121 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l 121 (769)
...++|+|+.|.|||.|++++++.. .....-..+++++ ...+...++..+.. .....+.+..
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~-~~~~~~a~v~y~~------se~f~~~~v~a~~~-----------~~~~~Fk~~y 174 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEA-LANGPNARVVYLT------SEDFTNDFVKALRD-----------NEMEKFKEKY 174 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH-HhhCCCceEEecc------HHHHHHHHHHHHHh-----------hhHHHHHHhh
Confidence 5689999999999999999999998 2223333555553 34444444444321 1122222222
Q ss_pred ccceEEEEEcccccccc----cccccccCCCCCCCCcEEEEEcCch---------hhhcccCCCceEEeecCCHHHHHHH
Q 039535 122 REKRIVLLLDDIWERLD----LTKVGVPLPGPKNTTSKVVFTTRFF---------DVCGSMEAHRTFEVACLSEKDAWEL 188 (769)
Q Consensus 122 ~~~~~llvlDd~~~~~~----~~~~~~~l~~~~~~~~~iiittr~~---------~~~~~~~~~~~~~l~~l~~~e~~~l 188 (769)
.-=++++||++-... -+.+...+......|..|++|++.. ++.+++...-.+.+.+.+.+...++
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 223889999963211 1222222221223344888888643 2344455667899999999999999
Q ss_pred HHHHhccccCCCchhHHHHHHHHHHHhCC----cchHHHHHHHHhcC---CCCHHHHHHHHHHHhcccC
Q 039535 189 FQEKVGEETLKSDHDIAELAQTVAKKCGG----LPLALVTIGRAMAS---KKTAEEWRHAIEELGRSAS 250 (769)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~G----~Plai~~~~~~l~~---~~~~~~~~~~l~~l~~~~~ 250 (769)
+.+.+.......++ +++..|++.... +.-|+..+..+-.- .-+.+.....++.+.....
T Consensus 253 L~kka~~~~~~i~~---ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 253 LRKKAEDRGIEIPD---EVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRAGE 318 (408)
T ss_pred HHHHHHhcCCCCCH---HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhcccc
Confidence 99988766655444 334444444333 33444444332221 1356666666666655544
No 162
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.01 E-value=0.00017 Score=79.83 Aligned_cols=198 Identities=19% Similarity=0.202 Sum_probs=105.3
Q ss_pred ccccchHHHHHHHHHHhh---c---------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHH
Q 039535 21 RTLVGLQSQLEQVWRCLI---E---------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLE 88 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~---~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 88 (769)
++++|-+...+++.+.+. . ...+-+.++||+|+|||++|+.++.+. ... ++.++. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~-----~~~i~~----~ 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVP-----FFSISG----S 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCC-----eeeccH----H
Confidence 578898887776665443 1 123458899999999999999999886 221 122211 1
Q ss_pred HHHHHHHHHcCCCCCCCCCccHHHHHHHHHHH-hccceEEEEEcccccccc----------------cccccccCCC-CC
Q 039535 89 KIQEDIGKRIGLVDDSWKSKSVEEKALDIFRS-LREKRIVLLLDDIWERLD----------------LTKVGVPLPG-PK 150 (769)
Q Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~llvlDd~~~~~~----------------~~~~~~~l~~-~~ 150 (769)
.+..... ..... .+..+++. ....+.+|++||++.... +..+...+.+ ..
T Consensus 123 ~~~~~~~-----------g~~~~-~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 123 DFVEMFV-----------GVGAS-RVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred HHHHHHh-----------cccHH-HHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 1111110 01111 22222322 345678999999964210 0011111110 12
Q ss_pred CCCcEEEEEcCchhh-----hcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCc-chHHHH
Q 039535 151 NTTSKVVFTTRFFDV-----CGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGL-PLALVT 224 (769)
Q Consensus 151 ~~~~~iiittr~~~~-----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~ 224 (769)
..+..||.||..+.. ...-.-+..+.++..+.++-.+++..+........+ .....+++.+.|. +..+..
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~----~~l~~la~~t~G~sgadl~~ 266 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD----VDLKAVARRTPGFSGADLAN 266 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc----hhHHHHHHhCCCCCHHHHHH
Confidence 234556666655432 221123467899999999999999888765432212 2244677777764 344444
Q ss_pred HHHH-----hcCC---CCHHHHHHHHHHHh
Q 039535 225 IGRA-----MASK---KTAEEWRHAIEELG 246 (769)
Q Consensus 225 ~~~~-----l~~~---~~~~~~~~~l~~l~ 246 (769)
+... .+.. -+.+++..+++...
T Consensus 267 l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 267 LLNEAALLAARKNKTEITMNDIEEAIDRVI 296 (495)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 3321 1111 25566666665543
No 163
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.01 E-value=2.5e-05 Score=86.56 Aligned_cols=47 Identities=21% Similarity=0.316 Sum_probs=40.3
Q ss_pred CccccchHHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 20 ERTLVGLQSQLEQVWRCLIE-----ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.++++|.+..++++..++.. ...++++|+|++|+||||+++.++..+
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999864 233569999999999999999999876
No 164
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.99 E-value=3.3e-05 Score=79.56 Aligned_cols=93 Identities=16% Similarity=0.160 Sum_probs=61.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC--CCHHHHHHHHHHHcCCCCCCCCCccHHHH---H
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD--PRLEKIQEDIGKRIGLVDDSWKSKSVEEK---A 114 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~ 114 (769)
+....++|+|++|+|||||++.+++.+. ..+|+..+|+.+... .++.++++.+...+-.......+...... +
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT--RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc--ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 4556889999999999999999999983 236888889988755 68999999885433222111111111111 1
Q ss_pred HHHHHH--hccceEEEEEcccc
Q 039535 115 LDIFRS--LREKRIVLLLDDIW 134 (769)
Q Consensus 115 ~~l~~~--l~~~~~llvlDd~~ 134 (769)
....+. ..+++++|++|++.
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChh
Confidence 111222 26789999999995
No 165
>CHL00176 ftsH cell division protein; Validated
Probab=97.97 E-value=0.00014 Score=81.46 Aligned_cols=171 Identities=15% Similarity=0.172 Sum_probs=95.7
Q ss_pred CccccchHHHHHHHHHHh---hc---------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 20 ERTLVGLQSQLEQVWRCL---IE---------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l---~~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
-++++|.++..+++.+.+ .. ...+-|.++||+|+|||++|++++.+. ... ++.++..
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~s--- 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISGS--- 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccHH---
Confidence 366889887777766654 21 123468899999999999999999886 211 2222111
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEccccccc------------c----cccccccCCC-CC
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERL------------D----LTKVGVPLPG-PK 150 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~------------~----~~~~~~~l~~-~~ 150 (769)
.+..... ..........+.+.....+.+|++||++... + +..+...+.+ ..
T Consensus 251 -~f~~~~~-----------g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 251 -EFVEMFV-----------GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred -HHHHHhh-----------hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 1111100 0111112222333335678999999996321 1 1122222211 12
Q ss_pred CCCcEEEEEcCchhhhc-----ccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCC
Q 039535 151 NTTSKVVFTTRFFDVCG-----SMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGG 217 (769)
Q Consensus 151 ~~~~~iiittr~~~~~~-----~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G 217 (769)
..+..||.||....... .-.-+..+.++..+.++-.+++..++....... ......+++.+.|
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~----d~~l~~lA~~t~G 386 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP----DVSLELIARRTPG 386 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch----hHHHHHHHhcCCC
Confidence 34556666666543211 112346789999999999999998886533111 2334567777776
No 166
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.96 E-value=3.6e-05 Score=80.75 Aligned_cols=106 Identities=18% Similarity=0.133 Sum_probs=70.3
Q ss_pred CccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcC
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIG 99 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~ 99 (769)
.++.++.+..++.+...+.. .+.+.++|++|+|||++|+++++.+ .....+..+.|+.+++..+..++.....
T Consensus 174 l~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~r---- 246 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYR---- 246 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccC----
Confidence 35678899999999999863 4578899999999999999999987 3334667888999888766555543221
Q ss_pred CCCCCCCCccH-HHHHHHHHHH---hccceEEEEEccccc
Q 039535 100 LVDDSWKSKSV-EEKALDIFRS---LREKRIVLLLDDIWE 135 (769)
Q Consensus 100 ~~~~~~~~~~~-~~~~~~l~~~---l~~~~~llvlDd~~~ 135 (769)
... ..... .....++.+. -.++++++|+|+++.
T Consensus 247 P~~---vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 247 PNG---VGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred CCC---CCeEecCchHHHHHHHHHhcccCCcEEEEehhhc
Confidence 100 11111 1111111111 234689999999964
No 167
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.93 E-value=3.5e-07 Score=97.64 Aligned_cols=125 Identities=26% Similarity=0.340 Sum_probs=76.5
Q ss_pred CceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCccchh-hhcCCCCcee
Q 039535 404 HLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEELPEE-LKLLVNLKCL 482 (769)
Q Consensus 404 ~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L 482 (769)
.|.+.+.++|. +..+.. .++-++.|+.|+|+.| .+..+ ..+..|++|++|+|+.|.++.+|.- ...+. |+.|
T Consensus 165 ~L~~a~fsyN~-L~~mD~-SLqll~ale~LnLshN---k~~~v-~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L 237 (1096)
T KOG1859|consen 165 KLATASFSYNR-LVLMDE-SLQLLPALESLNLSHN---KFTKV-DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLL 237 (1096)
T ss_pred hHhhhhcchhh-HHhHHH-HHHHHHHhhhhccchh---hhhhh-HHHHhcccccccccccchhccccccchhhhh-heee
Confidence 45555555555 433333 2666777777777777 33333 2666777777778777777766643 22223 7777
Q ss_pred eccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCC
Q 039535 483 NLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGS 552 (769)
Q Consensus 483 ~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~ 552 (769)
.++||. ++.+.. +.++.+|+.|+++.|-+... .....+..|..|+.|.+.++.
T Consensus 238 ~lrnN~-l~tL~g--ie~LksL~~LDlsyNll~~h--------------seL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 238 NLRNNA-LTTLRG--IENLKSLYGLDLSYNLLSEH--------------SELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eecccH-HHhhhh--HHhhhhhhccchhHhhhhcc--------------hhhhHHHHHHHHHHHhhcCCc
Confidence 777775 555554 66777777777777766532 234445555666666665443
No 168
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.93 E-value=1.7e-06 Score=93.43 Aligned_cols=125 Identities=27% Similarity=0.336 Sum_probs=63.3
Q ss_pred ceeEEEEeeccccc-cCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEe
Q 039535 382 NVRRLSLMQNQIKV-LSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLD 460 (769)
Q Consensus 382 ~l~~l~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~ 460 (769)
.+..+++..|.+.. ...+..+.+|..|++..|. +..+... +..|++|++|++++| .+..+ ..+..+..|+.|+
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~-l~~~~~L~~L~ls~N---~I~~i-~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNK-IEKIENL-LSSLVNLQVLDLSFN---KITKL-EGLSTLTLLKELN 146 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccc-hhhcccc-hhhhhcchheecccc---ccccc-cchhhccchhhhe
Confidence 33344444554443 2234555566666666554 4444332 445666666666666 33333 2334444566666
Q ss_pred ccCCCCCccchhhhcCCCCceeeccCCCcccccch-HHhcCCCcCcEEEeeccCCC
Q 039535 461 ISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPR-QLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 461 l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~~~~~l~~L~~L~l~~~~~~ 515 (769)
+++|.|+.+.. +..+++|+.+++++|. +..+.. . ...+.+|+.+.+.+|.+.
T Consensus 147 l~~N~i~~~~~-~~~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 147 LSGNLISDISG-LESLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred eccCcchhccC-CccchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCchh
Confidence 66666554432 3335666666666665 333333 1 245566666666665554
No 169
>PLN03150 hypothetical protein; Provisional
Probab=97.92 E-value=2.5e-05 Score=88.48 Aligned_cols=84 Identities=25% Similarity=0.434 Sum_probs=68.5
Q ss_pred cccEEEeeccCccccccCCccccCCCCCCEEeccCCCCC-ccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEE
Q 039535 429 SLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIE-ELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVL 507 (769)
Q Consensus 429 ~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L 507 (769)
.++.|+|++|.+. ..+|..++.+.+|++|+|++|.++ .+|..++.+++|+.|++++|...+.+|.. ++++++|++|
T Consensus 419 ~v~~L~L~~n~L~--g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGLR--GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCcc--ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEE
Confidence 3778888888422 256778888899999999999887 78888888999999999998866778876 8889999999
Q ss_pred EeeccCCC
Q 039535 508 RMFATGYD 515 (769)
Q Consensus 508 ~l~~~~~~ 515 (769)
++++|.+.
T Consensus 496 ~Ls~N~l~ 503 (623)
T PLN03150 496 NLNGNSLS 503 (623)
T ss_pred ECcCCccc
Confidence 99888765
No 170
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.90 E-value=0.00032 Score=71.51 Aligned_cols=173 Identities=15% Similarity=0.108 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhhhhcc----------------CCCCEEEEEEecCCCCHHH
Q 039535 27 QSQLEQVWRCLIEESAG-IIGLYGMGGVGKTTLLIHINNKFLESR----------------TNFDFVIWVVVSKDPRLEK 89 (769)
Q Consensus 27 ~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~----------------~~~~~~~w~~~~~~~~~~~ 89 (769)
+...+.+.+.+.+++.+ .+.++|+.|+||+++|..+++.+--.. .|.| +.|+......
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~---- 84 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNR---- 84 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCc----
Confidence 34556667777666644 588999999999999999988772100 0111 1222100000
Q ss_pred HHHHHHHHcCCCCCC-CCCccHHHHHHHHHHHh-----ccceEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcC
Q 039535 90 IQEDIGKRIGLVDDS-WKSKSVEEKALDIFRSL-----REKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVFTTR 161 (769)
Q Consensus 90 ~~~~l~~~l~~~~~~-~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iiittr 161 (769)
.+.+ .....+ +.++.+.+.+ .+++-++|+|+++... ..-.+..-+. ....++.+|++|.
T Consensus 85 -----------~~~k~~~~I~i-dqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~~~fiL~~~ 151 (319)
T PRK08769 85 -----------TGDKLRTEIVI-EQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLE-EPSPGRYLWLISA 151 (319)
T ss_pred -----------ccccccccccH-HHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhh-CCCCCCeEEEEEC
Confidence 0000 001112 2233334333 3455689999997532 1112222222 2234566666665
Q ss_pred c-hhhhccc-CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 162 F-FDVCGSM-EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 162 ~-~~~~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
+ ..+...+ ...+.+.+.+.+.+++.+.+.... . + ++.+..++..++|.|.....+.
T Consensus 152 ~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~-~-----~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 152 QPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG-V-----S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-C-----C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 4 4444332 346789999999999999997641 1 1 1235577899999998664443
No 171
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.87 E-value=0.0005 Score=70.26 Aligned_cols=174 Identities=11% Similarity=0.091 Sum_probs=93.1
Q ss_pred HHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhhhcc---CCCCEEE----EEEecCCCCHHHHHHHHHHHcCC
Q 039535 29 QLEQVWRCLIEESA-GIIGLYGMGGVGKTTLLIHINNKFLESR---TNFDFVI----WVVVSKDPRLEKIQEDIGKRIGL 100 (769)
Q Consensus 29 ~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~~~~~~~----w~~~~~~~~~~~~~~~l~~~l~~ 100 (769)
.-+.+...+.+++. ....++|+.|+||+++|+.+++.+-=.. ....+.+ ++..+..+++..+ ..
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p 81 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL--------EP 81 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE--------cc
Confidence 44556666665553 5677999999999999999988872100 0000000 0000111111000 00
Q ss_pred CCCCCCCccHHHHHHHHHHHh-----ccceEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCch-hhhcc-cCC
Q 039535 101 VDDSWKSKSVEEKALDIFRSL-----REKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVFTTRFF-DVCGS-MEA 171 (769)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iiittr~~-~~~~~-~~~ 171 (769)
. +.....+++. +.+.+.+ .+++-++|+|+++... ..-.+..-+. ....++.+|++|.++ .+... ...
T Consensus 82 ~--~~~~I~id~i-R~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLE-EPp~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 82 I--DNKDIGVDQV-REINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLE-EPRPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred c--cCCCCCHHHH-HHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhc-CCCCCeEEEEEECChHhCchHHHhh
Confidence 0 0011122222 2233333 3456688899997532 2222222222 233456666666554 44433 244
Q ss_pred CceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHH
Q 039535 172 HRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLAL 222 (769)
Q Consensus 172 ~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 222 (769)
.+.+.+.+++.+++.+.+.+...... ..+...+..++|.|..+
T Consensus 158 C~~~~~~~~~~~~~~~~L~~~~~~~~--------~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 158 CQTWLIHPPEEQQALDWLQAQSSAEI--------SEILTALRINYGRPLLA 200 (325)
T ss_pred ceEEeCCCCCHHHHHHHHHHHhccCh--------HHHHHHHHHcCCCHHHH
Confidence 67899999999999999987643211 12456678899999643
No 172
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.87 E-value=1.7e-05 Score=72.05 Aligned_cols=105 Identities=26% Similarity=0.369 Sum_probs=76.2
Q ss_pred ceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEec
Q 039535 382 NVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDI 461 (769)
Q Consensus 382 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l 461 (769)
....++|++|.+..+..++.++.|.+|.+.+|. +..|.+..-..+++|+.|.+++|.++.+..+ ..+..|++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcchhhhhhc-chhccCCccceeee
Confidence 456677888888778888888888888888776 7777776566678888888888844444444 34566788888888
Q ss_pred cCCCCCccchh----hhcCCCCceeeccCCC
Q 039535 462 SHSSIEELPEE----LKLLVNLKCLNLRWTD 488 (769)
Q Consensus 462 ~~~~i~~lp~~----~~~l~~L~~L~l~~~~ 488 (769)
-+|.++.-... +..+++|+.||..+-.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 88877754433 5677788888776543
No 173
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.86 E-value=3e-06 Score=94.54 Aligned_cols=136 Identities=22% Similarity=0.106 Sum_probs=84.0
Q ss_pred cccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCC--CCCccc----hhhhcCCCCceeeccCCCcccccchHH
Q 039535 424 FQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHS--SIEELP----EELKLLVNLKCLNLRWTDVLNKIPRQL 497 (769)
Q Consensus 424 ~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~--~i~~lp----~~~~~l~~L~~L~l~~~~~l~~lp~~~ 497 (769)
...+++|+.+.+.++.......+-.....+++|+.|+++++ .++..+ .....+++|+.|++++|..+++..-..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 44588999999998862222223345567889999999873 222222 234556889999999887555443322
Q ss_pred hc-CCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeE
Q 039535 498 IS-NLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSL 572 (769)
Q Consensus 498 ~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L 572 (769)
+. .+++|++|.+.+|...+ +..+......+++|+.|+++.+.......+......+++++.|
T Consensus 264 l~~~c~~L~~L~l~~c~~lt-------------~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l 326 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLT-------------DEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLREL 326 (482)
T ss_pred HHhhCCCcceEccCCCCccc-------------hhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhh
Confidence 33 48889999888777421 3445556677888888888866654333333222223444443
No 174
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.0001 Score=79.54 Aligned_cols=158 Identities=15% Similarity=0.189 Sum_probs=95.6
Q ss_pred CCccccchHHHHHHHHHHhh-----c-CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHH
Q 039535 19 TERTLVGLQSQLEQVWRCLI-----E-ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQE 92 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~-----~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 92 (769)
.+++.+|-++..+++++.+- . -+.++++++||+|+|||++|+.++..+ ...| +.+.++.-.+..++--
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkF---fRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKF---FRFSVGGMTDVAEIKG 482 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCce---EEEeccccccHHhhcc
Confidence 35788999999999999873 1 245789999999999999999999998 3322 2233444444444321
Q ss_pred HHHHHcCCCCCCCCCccHHHHHHHHHHHh---ccceEEEEEcccccc------------------cccccccccCCCCCC
Q 039535 93 DIGKRIGLVDDSWKSKSVEEKALDIFRSL---REKRIVLLLDDIWER------------------LDLTKVGVPLPGPKN 151 (769)
Q Consensus 93 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~~~~llvlDd~~~~------------------~~~~~~~~~l~~~~~ 151 (769)
+ .+..+..+..++.+.| +-..-|+.+|++|.. ++-..|..++....-
T Consensus 483 H------------RRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~ 550 (906)
T KOG2004|consen 483 H------------RRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPV 550 (906)
T ss_pred c------------ceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhcccccc
Confidence 1 2333444445555555 334568899999631 222223222211111
Q ss_pred CCcE--EEEEcCchhh--hcccCCCceEEeecCCHHHHHHHHHHHhc
Q 039535 152 TTSK--VVFTTRFFDV--CGSMEAHRTFEVACLSEKDAWELFQEKVG 194 (769)
Q Consensus 152 ~~~~--iiittr~~~~--~~~~~~~~~~~l~~l~~~e~~~l~~~~~~ 194 (769)
.=++ +|.|....+- .......+.|++.++..+|-..+..+++.
T Consensus 551 DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 551 DLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred chhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhh
Confidence 1233 3334332211 12223457899999999999999888763
No 175
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.85 E-value=0.00023 Score=73.91 Aligned_cols=146 Identities=10% Similarity=0.090 Sum_probs=86.0
Q ss_pred cccc-hHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhhhhcc-------------------CCCCEEEEEE
Q 039535 22 TLVG-LQSQLEQVWRCLIEESAG-IIGLYGMGGVGKTTLLIHINNKFLESR-------------------TNFDFVIWVV 80 (769)
Q Consensus 22 ~~vg-R~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~~~~~~~w~~ 80 (769)
.++| .+..++.+...+..++.. ...++|+.|+|||++|+.+++.+--.. .+.+. .++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~-~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV-HLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE-EEec
Confidence 4677 788888888888776644 568999999999999999988862110 01111 1111
Q ss_pred ecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-----ccceEEEEEccccccc--ccccccccCCCCCCCC
Q 039535 81 VSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-----REKRIVLLLDDIWERL--DLTKVGVPLPGPKNTT 153 (769)
Q Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~ 153 (769)
.. .....+++.. .+.+.+ .+.+-++|+|+++... ....+...+. ....+
T Consensus 85 ~~----------------------~~~i~id~ir-~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LE-EPp~~ 140 (329)
T PRK08058 85 PD----------------------GQSIKKDQIR-YLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLE-EPSGG 140 (329)
T ss_pred cc----------------------cccCCHHHHH-HHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhc-CCCCC
Confidence 00 0112222222 222222 3455679999996432 2233333333 33345
Q ss_pred cEEEEEcCch-hhhcc-cCCCceEEeecCCHHHHHHHHHHH
Q 039535 154 SKVVFTTRFF-DVCGS-MEAHRTFEVACLSEKDAWELFQEK 192 (769)
Q Consensus 154 ~~iiittr~~-~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~ 192 (769)
+.+|++|.+. .+... ......+++.+++.++..+.+...
T Consensus 141 ~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 141 TTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred ceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 6666666543 33332 234678999999999998888754
No 176
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.84 E-value=2.4e-05 Score=53.56 Aligned_cols=39 Identities=44% Similarity=0.609 Sum_probs=21.4
Q ss_pred CCCEEeccCCCCCccchhhhcCCCCceeeccCCCcccccc
Q 039535 455 SLELLDISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIP 494 (769)
Q Consensus 455 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp 494 (769)
+|++|++++|+|+.+|..+++|++|++|++++|+ +.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 4566666666666665555666666666666664 44443
No 177
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=4.7e-06 Score=79.93 Aligned_cols=37 Identities=8% Similarity=0.032 Sum_probs=26.6
Q ss_pred ccccccceEeecCcccccccc-------cccccCCccEEeecCC
Q 039535 624 FVFRSLRRVTMVSCHKLKDLT-------FLVFAPNLKSISLGDC 660 (769)
Q Consensus 624 ~~~~~L~~L~L~~~~~l~~l~-------~l~~l~~L~~L~l~~~ 660 (769)
..|++|..|.+.+++.+..+. .++.++++++|+=+.-
T Consensus 246 n~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskI 289 (418)
T KOG2982|consen 246 NGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKI 289 (418)
T ss_pred cCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCccc
Confidence 468888888888887666553 2667888888875533
No 178
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.82 E-value=0.0002 Score=73.44 Aligned_cols=104 Identities=15% Similarity=0.163 Sum_probs=66.6
Q ss_pred HHHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCE-EEEEEecC-CCCHHHHHHHHHHHcCCCCCCC
Q 039535 29 QLEQVWRCLIE-ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDF-VIWVVVSK-DPRLEKIQEDIGKRIGLVDDSW 105 (769)
Q Consensus 29 ~~~~l~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~-~~w~~~~~-~~~~~~~~~~l~~~l~~~~~~~ 105 (769)
...++++.+.. ++...+.|+|++|+|||||++.+++.... .+.+. ++|+-+.+ ..++.++.+.+...+.......
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~--~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA--NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh--cCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 44557777654 44457789999999999999999998732 22233 45655554 5688899998888766433111
Q ss_pred CCc---cHHHHHHHHHHHh--ccceEEEEEcccc
Q 039535 106 KSK---SVEEKALDIFRSL--REKRIVLLLDDIW 134 (769)
Q Consensus 106 ~~~---~~~~~~~~l~~~l--~~~~~llvlDd~~ 134 (769)
... ........+.+++ .+++++||+|++.
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 111 1111222333333 6789999999994
No 179
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.81 E-value=5.9e-05 Score=67.17 Aligned_cols=22 Identities=41% Similarity=0.427 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 039535 45 IGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 45 v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
|.|+|++|+|||++|+.+++.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999998
No 180
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.81 E-value=4.8e-06 Score=92.88 Aligned_cols=137 Identities=20% Similarity=0.142 Sum_probs=88.3
Q ss_pred CCCCCceEEEeecccchhccc-CcccccCCcccEEEeecc-Ccccccc--CCccccCCCCCCEEeccCCC-CCcc--chh
Q 039535 400 PTCPHLLTLFLDFNRELMMIA-GGYFQFMPSLKVLKISNI-GYFNVLK--LPLGMSKLGSLELLDISHSS-IEEL--PEE 472 (769)
Q Consensus 400 ~~~~~L~~L~l~~~~~~~~i~-~~~~~~l~~L~~L~l~~~-~~~~~~~--l~~~~~~l~~L~~L~l~~~~-i~~l--p~~ 472 (769)
..++.|+.|.+..+..+.... ......++.|+.|+++++ ....... .......+.+|+.|+++.+. ++.. ...
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 347889999888887665422 223677999999999873 2111111 12234567889999999986 6632 222
Q ss_pred hhcCCCCceeeccCCCccccc-chHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEE
Q 039535 473 LKLLVNLKCLNLRWTDVLNKI-PRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELT 549 (769)
Q Consensus 473 ~~~l~~L~~L~l~~~~~l~~l-p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~ 549 (769)
...+++|+.|.+.+|..++.. -..+...+++|++|++++|.... +........++++|+.+.+.
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~-------------d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT-------------DSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch-------------HHHHHHHHHhCcchhhhhhh
Confidence 334789999998888753322 22335578889999999887663 23344445667777776544
No 181
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.80 E-value=0.00019 Score=77.80 Aligned_cols=173 Identities=18% Similarity=0.140 Sum_probs=93.6
Q ss_pred ccccchHHHHHHHHHHh---hc-------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHH
Q 039535 21 RTLVGLQSQLEQVWRCL---IE-------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKI 90 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l---~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 90 (769)
+++.|.+...+.+.+.. .. ...+-|.++||+|+|||.+|++++.++ ...+ +-++.+ .
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~------~- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVG------K- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhH------H-
Confidence 55677776665555421 11 234568899999999999999999997 2221 112211 1
Q ss_pred HHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEcccccccc--------------cccccccCCCCCCCCcE
Q 039535 91 QEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERLD--------------LTKVGVPLPGPKNTTSK 155 (769)
Q Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~~--------------~~~~~~~l~~~~~~~~~ 155 (769)
+.... .... +..+..+++.. ...++++++|++|..-. +..+...+. ....+..
T Consensus 295 ---l~~~~-------vGes-e~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~-~~~~~V~ 362 (489)
T CHL00195 295 ---LFGGI-------VGES-ESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLS-EKKSPVF 362 (489)
T ss_pred ---hcccc-------cChH-HHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHh-cCCCceE
Confidence 11000 1111 12223333322 34689999999974210 011112222 2234455
Q ss_pred EEEEcCchhh-----hcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcch
Q 039535 156 VVFTTRFFDV-----CGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPL 220 (769)
Q Consensus 156 iiittr~~~~-----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 220 (769)
||.||..... ...-.-+..+.++..+.++-.++|..+.......... ......+++.+.|.--
T Consensus 363 vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfSG 430 (489)
T CHL00195 363 VVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFSG 430 (489)
T ss_pred EEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCCCH
Confidence 6667765432 1211335678899999999999999887654311100 1224567777766553
No 182
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00044 Score=74.40 Aligned_cols=171 Identities=19% Similarity=0.210 Sum_probs=96.6
Q ss_pred cccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHH
Q 039535 22 TLVGLQSQLEQVWRCLIE-------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLE 88 (769)
Q Consensus 22 ~~vgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 88 (769)
++=|-++...+|.+.+.- +..+-|.+|||||+|||++|++++++. .-+|-.+ .. .
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nFlsv-----kg----p 502 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNFLSV-----KG----P 502 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCeeec-----cC----H
Confidence 344466666666655431 356678899999999999999999997 3333322 11 1
Q ss_pred HHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhcc-ceEEEEEcccccccc-------------cccccccCCCCCCC-C
Q 039535 89 KIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLRE-KRIVLLLDDIWERLD-------------LTKVGVPLPGPKNT-T 153 (769)
Q Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~llvlDd~~~~~~-------------~~~~~~~l~~~~~~-~ 153 (769)
+++ ..... +-+..+.++++.-++ -+.+++||++|.... +.++...+.+.... +
T Consensus 503 EL~----sk~vG--------eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~ 570 (693)
T KOG0730|consen 503 ELF----SKYVG--------ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKN 570 (693)
T ss_pred HHH----HHhcC--------chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCc
Confidence 111 11111 113334444444433 569999999974211 11222333322222 3
Q ss_pred cEEEEEc-Cchhhh-ccc---CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcch
Q 039535 154 SKVVFTT-RFFDVC-GSM---EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPL 220 (769)
Q Consensus 154 ~~iiitt-r~~~~~-~~~---~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 220 (769)
..||-.| |+..+- +.+ +.+..+.++.-+.+.-.++|...+.......+-++ .+|++.+.|.--
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl----~~La~~T~g~SG 638 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDL----EELAQATEGYSG 638 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccH----HHHHHHhccCCh
Confidence 3444444 433321 122 24678899999999999999999876664444333 345666666553
No 183
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.75 E-value=0.00021 Score=76.67 Aligned_cols=190 Identities=13% Similarity=0.165 Sum_probs=114.3
Q ss_pred ccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhhhccC----CCCEEEEEEecCCCCHHHHHHHHH
Q 039535 21 RTLVGLQSQLEQVWRCLIEESA-GIIGLYGMGGVGKTTLLIHINNKFLESRT----NFDFVIWVVVSKDPRLEKIQEDIG 95 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----~~~~~~w~~~~~~~~~~~~~~~l~ 95 (769)
+++||.+-....|..++..++. ......|+-|+||||+|+-+++.+ .-.. .+.+.+-. -+++.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~Akal-NC~~~~~~ePC~~C~~-----------Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKAL-NCENGPTAEPCGKCIS-----------CKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHh-cCCCCCCCCcchhhhh-----------hHhhh
Confidence 6679999999999999987653 456799999999999999999887 2111 01111111 01111
Q ss_pred HH--cCCCC-CCCCCccHHHHHHHHHHHh-----ccceEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCchhh
Q 039535 96 KR--IGLVD-DSWKSKSVEEKALDIFRSL-----REKRIVLLLDDIWER--LDLTKVGVPLPGPKNTTSKVVFTTRFFDV 165 (769)
Q Consensus 96 ~~--l~~~~-~~~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~--~~~~~~~~~l~~~~~~~~~iiittr~~~~ 165 (769)
.. +.... +......+++ ++.+.+.. .++--++|+|+|+-. ..+-.+..-+. .......+|++|++..-
T Consensus 84 ~g~~~DviEiDaASn~gVdd-iR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLE-EPP~hV~FIlATTe~~K 161 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDD-IREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLE-EPPSHVKFILATTEPQK 161 (515)
T ss_pred cCCcccchhhhhhhccChHH-HHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccc-cCccCeEEEEecCCcCc
Confidence 11 00000 0001111221 22233333 445559999999532 33333433333 33446777777776432
Q ss_pred --hcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHH
Q 039535 166 --CGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGR 227 (769)
Q Consensus 166 --~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 227 (769)
.+-+...+.+.+..++.++....+...+..++...+ ++....|++..+|...-...+..
T Consensus 162 ip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~Gs~RDalslLD 222 (515)
T COG2812 162 IPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEGSLRDALSLLD 222 (515)
T ss_pred CchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCCChhhHHHHHH
Confidence 233355678999999999999999999987775544 35566788888886654444433
No 184
>PRK08116 hypothetical protein; Validated
Probab=97.75 E-value=7e-05 Score=75.02 Aligned_cols=102 Identities=25% Similarity=0.263 Sum_probs=56.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLR 122 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 122 (769)
..+.|+|++|+|||+||.++++.+.+ ....+++++ ..+++..+....... .... ...+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~---~~~~v~~~~------~~~ll~~i~~~~~~~----~~~~----~~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIE---KGVPVIFVN------FPQLLNRIKSTYKSS----GKED----ENEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEE------HHHHHHHHHHHHhcc----cccc----HHHHHHHhc
Confidence 35889999999999999999999832 234456664 344555555443221 1111 223344444
Q ss_pred cceEEEEEccccc--ccccc--cccccCCCCCCCCcEEEEEcCc
Q 039535 123 EKRIVLLLDDIWE--RLDLT--KVGVPLPGPKNTTSKVVFTTRF 162 (769)
Q Consensus 123 ~~~~llvlDd~~~--~~~~~--~~~~~l~~~~~~~~~iiittr~ 162 (769)
+-. ||||||+.. ..+|. .+...+......+..+|+||..
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 444 899999942 22222 1222222111234557888763
No 185
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.74 E-value=3.1e-05 Score=53.01 Aligned_cols=40 Identities=33% Similarity=0.541 Sum_probs=27.6
Q ss_pred CcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCccc
Q 039535 428 PSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEELP 470 (769)
Q Consensus 428 ~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp 470 (769)
++|++|++++| .+..+|+.+++|++|++|++++|+|+.++
T Consensus 1 ~~L~~L~l~~N---~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN---QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS---S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC---CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 46777777777 66667666777777777777777777654
No 186
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.74 E-value=0.00086 Score=63.55 Aligned_cols=171 Identities=14% Similarity=0.229 Sum_probs=96.8
Q ss_pred ccccchHHHHHH---HHHHhhcC------CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHH
Q 039535 21 RTLVGLQSQLEQ---VWRCLIEE------SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQ 91 (769)
Q Consensus 21 ~~~vgR~~~~~~---l~~~l~~~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 91 (769)
++.||.+....+ |++.|.+. ..+.|..+||+|.|||.+|++++++. +..+ +.+..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~---l~vka---------- 184 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPL---LLVKA---------- 184 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCce---EEech----------
Confidence 567898877654 45555431 46789999999999999999999997 2221 11111
Q ss_pred HHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEccccccc----------cc----ccccccCCC-CCCCCcE
Q 039535 92 EDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERL----------DL----TKVGVPLPG-PKNTTSK 155 (769)
Q Consensus 92 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~----------~~----~~~~~~l~~-~~~~~~~ 155 (769)
.+++... ..+-...+..+.++- +.-++++++|++|... +. -.+...+.+ ..+.|..
T Consensus 185 t~liGeh--------VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 185 TELIGEH--------VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred HHHHHHH--------hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 1111111 011112233333333 3358999999996321 11 111111211 2344555
Q ss_pred EEEEcCchhhhcc-c--CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcc
Q 039535 156 VVFTTRFFDVCGS-M--EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLP 219 (769)
Q Consensus 156 iiittr~~~~~~~-~--~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 219 (769)
.|.+|.++.++.. + .-.+.|+...-+++|-.+++...+..-....+.. .+.++.+++|+-
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~S 319 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGMS 319 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCCC
Confidence 5666655554332 1 2235688888999999999988876544333332 445666777754
No 187
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.73 E-value=0.00018 Score=70.89 Aligned_cols=168 Identities=18% Similarity=0.212 Sum_probs=98.4
Q ss_pred ccccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC--C---CHHHHH
Q 039535 21 RTLVGLQSQLEQVWRCLIE----ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD--P---RLEKIQ 91 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~--~---~~~~~~ 91 (769)
..++|-.++..++-.++++ +....|.|+||.|+|||+|......+.++...+|- -+...+. . -+.++.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l---~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFL---LVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEE---EEEECccchhhHHHHHHHH
Confidence 4589999999999999875 55667889999999999998877777533334333 2222221 1 233444
Q ss_pred HHHHHHcCCCCCCCCCccHHHHHHHHHHHh------ccceEEEEEcccccccc------cccccccCCCCCCCCcEEEEE
Q 039535 92 EDIGKRIGLVDDSWKSKSVEEKALDIFRSL------REKRIVLLLDDIWERLD------LTKVGVPLPGPKNTTSKVVFT 159 (769)
Q Consensus 92 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l------~~~~~llvlDd~~~~~~------~~~~~~~l~~~~~~~~~iiit 159 (769)
+++..++..... ...+..+....+.+.+ .+.++++|+|++|--.. +-.+...-.....+-+.|-+|
T Consensus 101 rql~~e~~~~~k--~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 101 RQLALELNRIVK--SFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHhhhhe--eecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 444444432211 2223334445555555 33468999999963211 111111111133456778889
Q ss_pred cCch-------hhhcccCCCceEEeecCCHHHHHHHHHHHh
Q 039535 160 TRFF-------DVCGSMEAHRTFEVACLSEKDAWELFQEKV 193 (769)
Q Consensus 160 tr~~-------~~~~~~~~~~~~~l~~l~~~e~~~l~~~~~ 193 (769)
||-. .+.+.+....++-++.+.-++-.++++...
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9853 334444444456667777788888887765
No 188
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.72 E-value=0.00028 Score=64.87 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=34.4
Q ss_pred chHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 25 GLQSQLEQVWRCLIEESAG-IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 25 gR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
|.++..+.+...+..++.+ .+.++|+.|+||+++|..+++.+
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 6678888888888776654 57999999999999999999887
No 189
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00039 Score=73.76 Aligned_cols=153 Identities=20% Similarity=0.259 Sum_probs=89.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL 121 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l 121 (769)
..-|.++||+|+|||-||++++++. .-+| +.+..+ +++.... -+-+..++.++++-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlNkYV------------GESErAVR~vFqRA 600 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLNKYV------------GESERAVRQVFQRA 600 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHHHHh------------hhHHHHHHHHHHHh
Confidence 3457899999999999999999997 3443 222221 2222221 11234455555555
Q ss_pred -ccceEEEEEccccccc-------------ccccccccCCCC-CCCCcEEEEEcCchhh-----hcccCCCceEEeecCC
Q 039535 122 -REKRIVLLLDDIWERL-------------DLTKVGVPLPGP-KNTTSKVVFTTRFFDV-----CGSMEAHRTFEVACLS 181 (769)
Q Consensus 122 -~~~~~llvlDd~~~~~-------------~~~~~~~~l~~~-~~~~~~iiittr~~~~-----~~~~~~~~~~~l~~l~ 181 (769)
..-+++|+||++|... -.-++...+.+. ...|..||-+|..+++ +..=.-+..+.++.-+
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn 680 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPN 680 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCC
Confidence 4469999999997421 111222223322 3356666666654443 2211235678888889
Q ss_pred HHHHHHHHHHHhc--cccCCCchhHHHHHHHHHHHhCCcch
Q 039535 182 EKDAWELFQEKVG--EETLKSDHDIAELAQTVAKKCGGLPL 220 (769)
Q Consensus 182 ~~e~~~l~~~~~~--~~~~~~~~~~~~~~~~i~~~~~G~Pl 220 (769)
.+|-.+++..... +.....+-.+++++.. .+|.|..-
T Consensus 681 ~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gftG 719 (802)
T KOG0733|consen 681 AEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFTG 719 (802)
T ss_pred HHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCch
Confidence 9999999998887 4444555555554432 34556553
No 190
>PRK08181 transposase; Validated
Probab=97.71 E-value=7.5e-05 Score=74.27 Aligned_cols=77 Identities=22% Similarity=0.210 Sum_probs=46.5
Q ss_pred HHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHH
Q 039535 35 RCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKA 114 (769)
Q Consensus 35 ~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 114 (769)
+|+. ....++|+|++|+|||.||.++++.. ......+.|++ ..+++..+..... .......
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a---~~~g~~v~f~~------~~~L~~~l~~a~~-------~~~~~~~- 161 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLAL---IENGWRVLFTR------TTDLVQKLQVARR-------ELQLESA- 161 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHH---HHcCCceeeee------HHHHHHHHHHHHh-------CCcHHHH-
Confidence 4543 34568999999999999999999987 22334556654 3445555543321 1122222
Q ss_pred HHHHHHhccceEEEEEcccc
Q 039535 115 LDIFRSLREKRIVLLLDDIW 134 (769)
Q Consensus 115 ~~l~~~l~~~~~llvlDd~~ 134 (769)
.+.+. +.=|+|+||+.
T Consensus 162 ---l~~l~-~~dLLIIDDlg 177 (269)
T PRK08181 162 ---IAKLD-KFDLLILDDLA 177 (269)
T ss_pred ---HHHHh-cCCEEEEeccc
Confidence 22232 23489999995
No 191
>PRK12377 putative replication protein; Provisional
Probab=97.69 E-value=7.9e-05 Score=73.15 Aligned_cols=74 Identities=26% Similarity=0.268 Sum_probs=45.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRS 120 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 120 (769)
+...+.|+|++|+|||+||.++++.+. .....++++++ .+++..+...... .... ..+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~------~~l~~~l~~~~~~------~~~~----~~~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTV------PDVMSRLHESYDN------GQSG----EKFLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEH------HHHHHHHHHHHhc------cchH----HHHHHH
Confidence 346789999999999999999999983 23334566643 3444444443321 1111 123333
Q ss_pred hccceEEEEEcccc
Q 039535 121 LREKRIVLLLDDIW 134 (769)
Q Consensus 121 l~~~~~llvlDd~~ 134 (769)
+ .+.-|||+||+.
T Consensus 161 l-~~~dLLiIDDlg 173 (248)
T PRK12377 161 L-CKVDLLVLDEIG 173 (248)
T ss_pred h-cCCCEEEEcCCC
Confidence 3 244589999994
No 192
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.67 E-value=0.00041 Score=80.82 Aligned_cols=158 Identities=18% Similarity=0.188 Sum_probs=84.4
Q ss_pred ccccchHHHHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHH
Q 039535 21 RTLVGLQSQLEQVWRCLIE------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDI 94 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 94 (769)
.+++|.+...+++.+++.. .+.+++.++||+|+|||++|+.+++.+ ...|.. +..+...+..++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l---~~~~~~---i~~~~~~~~~~i~g-- 391 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL---NRKFVR---FSLGGVRDEAEIRG-- 391 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh---cCCeEE---EeCCCcccHHHHcC--
Confidence 5688999999999886531 234578999999999999999999998 332221 22222222222211
Q ss_pred HHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccccc---------ccc---------ccccC-CCC-CCCCc
Q 039535 95 GKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERLD---------LTK---------VGVPL-PGP-KNTTS 154 (769)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~---------~~~---------~~~~l-~~~-~~~~~ 154 (769)
................+... ....-+++||+++.... +.. +...+ ... .....
T Consensus 392 ------~~~~~~g~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 392 ------HRRTYVGAMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred ------CCCceeCCCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 00000111111222222222 22334789999964321 101 11111 000 01234
Q ss_pred EEEEEcCchhh--hcccCCCceEEeecCCHHHHHHHHHHHh
Q 039535 155 KVVFTTRFFDV--CGSMEAHRTFEVACLSEKDAWELFQEKV 193 (769)
Q Consensus 155 ~iiittr~~~~--~~~~~~~~~~~l~~l~~~e~~~l~~~~~ 193 (769)
.+|.||..... .+.......+.+.+++.++..+++.+..
T Consensus 465 ~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 55556554321 1112334679999999999999887754
No 193
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.66 E-value=0.0013 Score=66.15 Aligned_cols=55 Identities=24% Similarity=0.266 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHH
Q 039535 28 SQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKI 90 (769)
Q Consensus 28 ~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 90 (769)
+.++++..++.. .+.+.|+|++|+|||++|+.+++.. . ...+.+++....+..++
T Consensus 9 ~l~~~~l~~l~~--g~~vLL~G~~GtGKT~lA~~la~~l---g---~~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 9 RVTSRALRYLKS--GYPVHLRGPAGTGKTTLAMHVARKR---D---RPVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHHhc--CCeEEEEcCCCCCHHHHHHHHHHHh---C---CCEEEEeCCccCCHHHH
Confidence 344555555532 3467799999999999999999865 1 12445555554444443
No 194
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.0011 Score=68.71 Aligned_cols=175 Identities=13% Similarity=0.057 Sum_probs=93.2
Q ss_pred HHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhhhhcc--C-CCCEE----EEEEecCCCCHHHHHHHHHHHcCC
Q 039535 29 QLEQVWRCLIEES-AGIIGLYGMGGVGKTTLLIHINNKFLESR--T-NFDFV----IWVVVSKDPRLEKIQEDIGKRIGL 100 (769)
Q Consensus 29 ~~~~l~~~l~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~-~~~~~----~w~~~~~~~~~~~~~~~l~~~l~~ 100 (769)
.-+++...+.+++ .....++|+.|+||+++|.+++..+-=.. . ...+. .++..+..+++..+ ..
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p 81 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL--------TP 81 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------ec
Confidence 3456666666555 45678999999999999999988772100 0 00000 00000111111000 00
Q ss_pred CCCCCCCccHHHHHHHHHHHh-----ccceEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCc-hhhhcc-cCC
Q 039535 101 VDDSWKSKSVEEKALDIFRSL-----REKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVFTTRF-FDVCGS-MEA 171 (769)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iiittr~-~~~~~~-~~~ 171 (769)
... .....+++ ++.+.+.+ .+++-++|+|+++... ..-.+..-+. ....++.+|.+|.+ ..+... ...
T Consensus 82 ~~~-~~~I~idq-iR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 82 EKG-KSSLGVDA-VREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLE-EPPENTWFFLACREPARLLATLRSR 158 (334)
T ss_pred ccc-cccCCHHH-HHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhc-CCCCCeEEEEEECChhhChHHHHhc
Confidence 000 01122222 22333333 3556689999996532 2222222222 23345666666655 444433 234
Q ss_pred CceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHH
Q 039535 172 HRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLAL 222 (769)
Q Consensus 172 ~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 222 (769)
.+.+.+.+++.+++.+.+.+..+ .+ .+.+..++..++|.|...
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~~-----~~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 159 CRLHYLAPPPEQYALTWLSREVT-----MS---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred cccccCCCCCHHHHHHHHHHccC-----CC---HHHHHHHHHHcCCCHHHH
Confidence 56789999999999998876432 11 233667889999999644
No 195
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.64 E-value=0.00038 Score=75.93 Aligned_cols=56 Identities=27% Similarity=0.389 Sum_probs=45.7
Q ss_pred CccccchHHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEE
Q 039535 20 ERTLVGLQSQLEQVWRCLIE-----ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVV 80 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~ 80 (769)
..+++...+.++++.+||.. ...++++++||+|+||||.++.+++++ .+...-|.+
T Consensus 18 ~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred HHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 35677788899999999974 235688999999999999999999997 566777764
No 196
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.64 E-value=0.00042 Score=80.58 Aligned_cols=173 Identities=19% Similarity=0.215 Sum_probs=94.4
Q ss_pred ccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 21 RTLVGLQSQLEQVWRCLIE-------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
+++.|.+..++++.+.+.- ...+.+.|+|++|+|||++|+.+++.. ... .+.++..
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~---~i~i~~~----- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAY---FISINGP----- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCe---EEEEecH-----
Confidence 5688999999998877631 223568899999999999999999987 221 2222211
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHH-hccceEEEEEcccccccc-------------cccccccCCCCCCCC
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRS-LREKRIVLLLDDIWERLD-------------LTKVGVPLPGPKNTT 153 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~llvlDd~~~~~~-------------~~~~~~~l~~~~~~~ 153 (769)
.+. ... .. .....+..+++. ....+.++++||++.... ...+...+.+....+
T Consensus 247 -~i~----~~~-------~g-~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~ 313 (733)
T TIGR01243 247 -EIM----SKY-------YG-ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRG 313 (733)
T ss_pred -HHh----ccc-------cc-HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCC
Confidence 111 000 11 112223333332 345678999999864210 111222222111223
Q ss_pred cEEEE-EcCchhh-hccc----CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchH
Q 039535 154 SKVVF-TTRFFDV-CGSM----EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLA 221 (769)
Q Consensus 154 ~~iii-ttr~~~~-~~~~----~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 221 (769)
..+++ ||..... ...+ .-...+.+...+.++..+++...........+ .....+++.+.|..-+
T Consensus 314 ~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d----~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 314 RVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED----VDLDKLAEVTHGFVGA 383 (733)
T ss_pred CEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc----cCHHHHHHhCCCCCHH
Confidence 33444 5544322 1111 12356888888999999999866543332111 2245677778776543
No 197
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0005 Score=71.75 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=34.7
Q ss_pred ccccchH---HHHHHHHHHhhc--------CC-ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQ---SQLEQVWRCLIE--------ES-AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~---~~~~~l~~~l~~--------~~-~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
++.-|-+ +|++++++.|++ ++ ++-|.++||||.|||-||++++-+.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 4556655 456667777764 23 3458899999999999999999997
No 198
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.63 E-value=1.4e-06 Score=93.21 Aligned_cols=130 Identities=21% Similarity=0.328 Sum_probs=89.2
Q ss_pred CCCCCCcceeEEEEeeccccccC-CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCcc-ccC
Q 039535 375 PDVKGWENVRRLSLMQNQIKVLS-EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLG-MSK 452 (769)
Q Consensus 375 ~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~-~~~ 452 (769)
.+...|..|...+.+.|.+..+. ++.-++.|+.|+|++|+ +.++. ++..|+.|+.|||+.| .+..+|.. ...
T Consensus 158 ~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v~--~Lr~l~~LkhLDlsyN---~L~~vp~l~~~g 231 (1096)
T KOG1859|consen 158 SNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNK-FTKVD--NLRRLPKLKHLDLSYN---CLRHVPQLSMVG 231 (1096)
T ss_pred ccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-hhhhH--HHHhcccccccccccc---hhccccccchhh
Confidence 33345667777777777775553 45667888888888887 55554 4778888888888888 55555532 223
Q ss_pred CCCCCEEeccCCCCCccchhhhcCCCCceeeccCCCccc--ccchHHhcCCCcCcEEEeeccCC
Q 039535 453 LGSLELLDISHSSIEELPEELKLLVNLKCLNLRWTDVLN--KIPRQLISNLSRVRVLRMFATGY 514 (769)
Q Consensus 453 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~--~lp~~~~~~l~~L~~L~l~~~~~ 514 (769)
| +|+.|.+++|-++++ ..+.++.+|+.||+++|-... ++-+ ++.+..|+.|.+.||++
T Consensus 232 c-~L~~L~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~p--LwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 232 C-KLQLLNLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEP--LWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred h-hheeeeecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhH--HHHHHHHHHHhhcCCcc
Confidence 3 388888888887776 457778888888888875333 2333 66777888888877764
No 199
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.61 E-value=4.6e-05 Score=71.14 Aligned_cols=74 Identities=27% Similarity=0.423 Sum_probs=43.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHH
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFR 119 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 119 (769)
+....++|+|++|+|||.||.++++++. .....+.|++ ..+++..+.... ....... +.+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~---~~g~~v~f~~------~~~L~~~l~~~~-------~~~~~~~----~~~ 104 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAI---RKGYSVLFIT------ASDLLDELKQSR-------SDGSYEE----LLK 104 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHH---HTT--EEEEE------HHHHHHHHHCCH-------CCTTHCH----HHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhc---cCCcceeEee------cCceeccccccc-------cccchhh----hcC
Confidence 3446789999999999999999999883 2334567765 344555554321 1112222 233
Q ss_pred HhccceEEEEEcccc
Q 039535 120 SLREKRIVLLLDDIW 134 (769)
Q Consensus 120 ~l~~~~~llvlDd~~ 134 (769)
.+.. .=|+||||+.
T Consensus 105 ~l~~-~dlLilDDlG 118 (178)
T PF01695_consen 105 RLKR-VDLLILDDLG 118 (178)
T ss_dssp HHHT-SSCEEEETCT
T ss_pred cccc-ccEecccccc
Confidence 3332 2377899994
No 200
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.60 E-value=0.00018 Score=64.92 Aligned_cols=88 Identities=24% Similarity=0.044 Sum_probs=49.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL 121 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l 121 (769)
.+.+.|+|++|+||||+++.++..+. .....++++.............. ....... ..............+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG---PPGGGVIYIDGEDILEEVLDQLL---LIIVGGK-KASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC---CCCCCEEEECCEEccccCHHHHH---hhhhhcc-CCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999982 22234555554443222222111 0000011 12223333344445555
Q ss_pred ccc-eEEEEEcccccc
Q 039535 122 REK-RIVLLLDDIWER 136 (769)
Q Consensus 122 ~~~-~~llvlDd~~~~ 136 (769)
... ..++++|+++..
T Consensus 75 ~~~~~~viiiDei~~~ 90 (148)
T smart00382 75 RKLKPDVLILDEITSL 90 (148)
T ss_pred HhcCCCEEEEECCccc
Confidence 443 489999999654
No 201
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.59 E-value=7.3e-06 Score=88.60 Aligned_cols=129 Identities=24% Similarity=0.415 Sum_probs=92.8
Q ss_pred CCCCcceeEEEEeeccccccCC-CCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCC
Q 039535 377 VKGWENVRRLSLMQNQIKVLSE-VPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGS 455 (769)
Q Consensus 377 ~~~~~~l~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~ 455 (769)
+..+.++..+.+..|.+..+.. +..+++|++|++++|. +.++.. +..++.|+.|++++| .+..+. .+..+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~--l~~l~~L~~L~l~~N---~i~~~~-~~~~l~~ 163 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG--LSTLTLLKELNLSGN---LISDIS-GLESLKS 163 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc--hhhccchhhheeccC---cchhcc-CCccchh
Confidence 4556788888999998888887 7889999999999887 777665 677888999999998 554442 3444788
Q ss_pred CCEEeccCCCCCccchh-hhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCC
Q 039535 456 LELLDISHSSIEELPEE-LKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 456 L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 515 (769)
|+.+++++|.++.+... ...+.+++.+++.+|. +..+.. +..+..+..+++..|.+.
T Consensus 164 L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~--~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 164 LKLLDLSYNRIVDIENDELSELISLEELDLGGNS-IREIEG--LDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred hhcccCCcchhhhhhhhhhhhccchHHHhccCCc-hhcccc--hHHHHHHHHhhcccccce
Confidence 99999999988877654 5778888888888886 333332 333444444455555544
No 202
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00021 Score=79.83 Aligned_cols=157 Identities=14% Similarity=0.160 Sum_probs=95.4
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCC-----CEEEEEEecCCCCHHHHHHHHH
Q 039535 21 RTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNF-----DFVIWVVVSKDPRLEKIQEDIG 95 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~-----~~~~w~~~~~~~~~~~~~~~l~ 95 (769)
.+.+||+.|+.++++.|.....-.-+++|.+|+|||++|.-++.+..+ .+-+ ..++-.+ +..+.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~-g~VP~~L~~~~i~sLD------~g~Lv---- 238 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVN-GDVPESLKDKRIYSLD------LGSLV---- 238 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhc-CCCCHHHcCCEEEEec------HHHHh----
Confidence 568999999999999997543344568999999999999999999832 2111 1222111 11111
Q ss_pred HHcCCCCCCCCCccHHHHHHHHHHHhc-cceEEEEEccccccc--------ccccccccCCCCCCCCcE-EEEEcCchhh
Q 039535 96 KRIGLVDDSWKSKSVEEKALDIFRSLR-EKRIVLLLDDIWERL--------DLTKVGVPLPGPKNTTSK-VVFTTRFFDV 165 (769)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~llvlDd~~~~~--------~~~~~~~~l~~~~~~~~~-iiittr~~~~ 165 (769)
. .....-+.++.++.+.+.+. ..++++++|++.... ..+..-..-|.-....-+ |-.||-++..
T Consensus 239 ---A---GakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYR 312 (786)
T COG0542 239 ---A---GAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYR 312 (786)
T ss_pred ---c---cccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHH
Confidence 1 11144566677777777774 348999999996421 122221112211122233 4445544322
Q ss_pred ------hcccCCCceEEeecCCHHHHHHHHHHHhc
Q 039535 166 ------CGSMEAHRTFEVACLSEKDAWELFQEKVG 194 (769)
Q Consensus 166 ------~~~~~~~~~~~l~~l~~~e~~~l~~~~~~ 194 (769)
++.....+.+.+...+.+++..++.....
T Consensus 313 k~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~ 347 (786)
T COG0542 313 KYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKE 347 (786)
T ss_pred HHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHH
Confidence 22224568899999999999999987653
No 203
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=9.9e-06 Score=77.80 Aligned_cols=90 Identities=20% Similarity=0.177 Sum_probs=43.8
Q ss_pred ccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCccchhh-hcCCCCceeeccCCCcccccchHHhcCCCc
Q 039535 425 QFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEELPEEL-KLLVNLKCLNLRWTDVLNKIPRQLISNLSR 503 (769)
Q Consensus 425 ~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~ 503 (769)
..++.++.++|.+|.+.....+...+.+++.|++|+++.|.+..--.++ -...+|+.|.+.++...+.-..+.+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 3455666666666644444444444456666666666666544110111 233455556555554333322222445555
Q ss_pred CcEEEeeccCC
Q 039535 504 VRVLRMFATGY 514 (769)
Q Consensus 504 L~~L~l~~~~~ 514 (769)
+++|+++.|.+
T Consensus 148 vtelHmS~N~~ 158 (418)
T KOG2982|consen 148 VTELHMSDNSL 158 (418)
T ss_pred hhhhhhccchh
Confidence 55555555543
No 204
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.57 E-value=0.00018 Score=73.83 Aligned_cols=37 Identities=30% Similarity=0.328 Sum_probs=29.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEe
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVV 81 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~ 81 (769)
...+.++|++|+|||+||.++++.+. .....|++++.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~---~~g~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL---DRGKSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEEH
Confidence 36799999999999999999999983 23346677653
No 205
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.56 E-value=0.0004 Score=80.06 Aligned_cols=160 Identities=16% Similarity=0.152 Sum_probs=88.5
Q ss_pred CccccchHHHHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHH
Q 039535 20 ERTLVGLQSQLEQVWRCLIE------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQED 93 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 93 (769)
+.+++|.++..+++.+++.. .....+.++||+|+||||+|+.++..+ ...|. -+..+...+...+..+
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l---~~~~~---~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT---GRKYV---RMALGGVRDEAEIRGH 394 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEE---EEEcCCCCCHHHhccc
Confidence 46789999999999988752 234578999999999999999999887 22222 2333333333222211
Q ss_pred HHHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccccc------cccccccCC-------------C-CCCCC
Q 039535 94 IGKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERLD------LTKVGVPLP-------------G-PKNTT 153 (769)
Q Consensus 94 l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~------~~~~~~~l~-------------~-~~~~~ 153 (769)
-....+ .........+.. .....-+++||+++.... ...+...+. - ..-..
T Consensus 395 ~~~~~g--------~~~G~~~~~l~~-~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 395 RRTYIG--------SMPGKLIQKMAK-VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred hhccCC--------CCCcHHHHHHHh-cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCc
Confidence 111111 111112222222 222334788999964311 111111111 0 11134
Q ss_pred cEEEEEcCchhhhc-ccCCCceEEeecCCHHHHHHHHHHHhc
Q 039535 154 SKVVFTTRFFDVCG-SMEAHRTFEVACLSEKDAWELFQEKVG 194 (769)
Q Consensus 154 ~~iiittr~~~~~~-~~~~~~~~~l~~l~~~e~~~l~~~~~~ 194 (769)
..+|.|+.+..+.. .......+.+.+++.+|-.++..++..
T Consensus 466 v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 466 VMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred eEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhhh
Confidence 45555665433211 123346799999999999999888763
No 206
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00093 Score=72.25 Aligned_cols=150 Identities=19% Similarity=0.169 Sum_probs=86.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-c
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-R 122 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~ 122 (769)
-|.++|++|+|||.||-+++... ..-++++-.+ +++.... +.+. +..+.++.+- .
T Consensus 703 giLLyGppGcGKT~la~a~a~~~--------~~~fisvKGP----ElL~KyI-----------GaSE-q~vR~lF~rA~~ 758 (952)
T KOG0735|consen 703 GILLYGPPGCGKTLLASAIASNS--------NLRFISVKGP----ELLSKYI-----------GASE-QNVRDLFERAQS 758 (952)
T ss_pred ceEEECCCCCcHHHHHHHHHhhC--------CeeEEEecCH----HHHHHHh-----------cccH-HHHHHHHHHhhc
Confidence 47899999999999999999887 2445555443 2222222 2222 3333444443 6
Q ss_pred cceEEEEEccccccc-------------ccccccccCCCCC-CCCcEEEEEcCchhh-----hcccCCCceEEeecCCHH
Q 039535 123 EKRIVLLLDDIWERL-------------DLTKVGVPLPGPK-NTTSKVVFTTRFFDV-----CGSMEAHRTFEVACLSEK 183 (769)
Q Consensus 123 ~~~~llvlDd~~~~~-------------~~~~~~~~l~~~~-~~~~~iiittr~~~~-----~~~~~~~~~~~l~~l~~~ 183 (769)
-++++++||++|... ..-++...+.+.. -.|..|+.+|..+++ +..-+-++.+.=+.-++.
T Consensus 759 a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~ 838 (952)
T KOG0735|consen 759 AKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEP 838 (952)
T ss_pred cCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcH
Confidence 689999999997531 1222223333222 245555554433333 222122445555666778
Q ss_pred HHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchH
Q 039535 184 DAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLA 221 (769)
Q Consensus 184 e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 221 (769)
|-.++++..........+ ...+.++.+++|..-|
T Consensus 839 eRl~il~~ls~s~~~~~~----vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 839 ERLEILQVLSNSLLKDTD----VDLECLAQKTDGFTGA 872 (952)
T ss_pred HHHHHHHHHhhccCCccc----cchHHHhhhcCCCchh
Confidence 888888877654432222 2355788888888765
No 207
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.52 E-value=0.0019 Score=75.23 Aligned_cols=171 Identities=19% Similarity=0.248 Sum_probs=96.3
Q ss_pred ccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 21 RTLVGLQSQLEQVWRCLIE-------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
.++.|.+...+.+.+.+.- ...+-+.++||+|+|||++|++++.+. ...| +.+..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~---- 520 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRG---- 520 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----
Confidence 4578888887777766531 123458899999999999999999987 2222 22211
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEcccccccc--------------cccccccCCC-CCC
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERLD--------------LTKVGVPLPG-PKN 151 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~~--------------~~~~~~~l~~-~~~ 151 (769)
.+ +.... ... .+..+..+++.. ...+.++++|+++.... ...+...+.+ ...
T Consensus 521 ~~----l~~~~-------vGe-se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 521 PE----ILSKW-------VGE-SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred HH----Hhhcc-------cCc-HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 11 11111 111 122344444444 44679999999964210 1112222221 122
Q ss_pred CCcEEEEEcCchhhhc-c-c---CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcc
Q 039535 152 TTSKVVFTTRFFDVCG-S-M---EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLP 219 (769)
Q Consensus 152 ~~~~iiittr~~~~~~-~-~---~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 219 (769)
.+..||.||..+.... . . .-+..+.++..+.++-.+++..+........+-+ ...+++.+.|.-
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 3455666665544321 1 1 2356789999999999999987765443222222 345677777755
No 208
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.52 E-value=0.0016 Score=69.23 Aligned_cols=165 Identities=18% Similarity=0.167 Sum_probs=95.8
Q ss_pred cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC-CCHHHHHHHHHHHcCCCC
Q 039535 24 VGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD-PRLEKIQEDIGKRIGLVD 102 (769)
Q Consensus 24 vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~l~~~l~~~~ 102 (769)
.-|..-+.++.+.+..... +++|+||-++||||+++.+..... .. .++++.... .+...+
T Consensus 20 ~~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~---~~---~iy~~~~d~~~~~~~l------------ 80 (398)
T COG1373 20 IERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLL---EE---IIYINFDDLRLDRIEL------------ 80 (398)
T ss_pred hhHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCC---cc---eEEEEecchhcchhhH------------
Confidence 3344555555555532232 999999999999999977777762 21 455443221 111111
Q ss_pred CCCCCccHHHHHHHHHHHhccceEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhhhc------ccCCCceEE
Q 039535 103 DSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERLDLTKVGVPLPGPKNTTSKVVFTTRFFDVCG------SMEAHRTFE 176 (769)
Q Consensus 103 ~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~~~~~~~~l~~~~~~~~~iiittr~~~~~~------~~~~~~~~~ 176 (769)
.+....+.+.-..++..++||+|+...+|......+. ..+.. .|++|+-+..... ..+....++
T Consensus 81 --------~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~-d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~ 150 (398)
T COG1373 81 --------LDLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLY-DRGNL-DVLITGSSSSLLSKEISESLAGRGKDLE 150 (398)
T ss_pred --------HHHHHHHHHhhccCCceEEEecccCchhHHHHHHHHH-ccccc-eEEEECCchhhhccchhhhcCCCceeEE
Confidence 1111112222222778999999999999888877776 33333 7888887654422 123467899
Q ss_pred eecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHH
Q 039535 177 VACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVT 224 (769)
Q Consensus 177 l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 224 (769)
+.||+..|-..+....+ ... ..+. .-.-+-.+||.|.++..
T Consensus 151 l~PlSF~Efl~~~~~~~-----~~~-~~~~-~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 151 LYPLSFREFLKLKGEEI-----EPS-KLEL-LFEKYLETGGFPESVKA 191 (398)
T ss_pred ECCCCHHHHHhhccccc-----chh-HHHH-HHHHHHHhCCCcHHHhC
Confidence 99999998877643000 000 1111 22233457999987644
No 209
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.0031 Score=64.35 Aligned_cols=164 Identities=14% Similarity=0.058 Sum_probs=92.6
Q ss_pred HHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhhhhcc------------------CCCCEEEEEEecCCCCHH
Q 039535 28 SQLEQVWRCLIEES-AGIIGLYGMGGVGKTTLLIHINNKFLESR------------------TNFDFVIWVVVSKDPRLE 88 (769)
Q Consensus 28 ~~~~~l~~~l~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------------------~~~~~~~w~~~~~~~~~~ 88 (769)
..-+++.+.+..++ ...+.++|+.|+||+++|+.+++.+-=.. .|.+ ..|+.-..
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~----- 83 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEK----- 83 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCc-----
Confidence 34455666665555 45688999999999999999988762100 1111 11221100
Q ss_pred HHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-----ccceEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcC
Q 039535 89 KIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-----REKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVFTTR 161 (769)
Q Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iiittr 161 (769)
......+++. +.+.+.+ .+.+-++|+|+++... ..-.+..-+. ....++.+|++|.
T Consensus 84 ---------------~~~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~ 146 (319)
T PRK06090 84 ---------------EGKSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLE-EPAPNCLFLLVTH 146 (319)
T ss_pred ---------------CCCcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhc-CCCCCeEEEEEEC
Confidence 0011222322 2333333 3345688999996532 2222222222 2234566666555
Q ss_pred c-hhhhccc-CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHH
Q 039535 162 F-FDVCGSM-EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTI 225 (769)
Q Consensus 162 ~-~~~~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 225 (769)
+ ..+...+ ...+.+.+.+++.+++.+.+..... + .+..++..++|.|.....+
T Consensus 147 ~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~------~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 147 NQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGI------T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCC------c-----hHHHHHHHcCCCHHHHHHH
Confidence 4 4444333 4567899999999999999976421 1 1245678899999866544
No 210
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.49 E-value=5.2e-05 Score=85.66 Aligned_cols=131 Identities=21% Similarity=0.248 Sum_probs=81.7
Q ss_pred cceeEEEEeeccccc---cCCC-CCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCC
Q 039535 381 ENVRRLSLMQNQIKV---LSEV-PTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSL 456 (769)
Q Consensus 381 ~~l~~l~l~~~~~~~---~~~~-~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L 456 (769)
.+|++|++.+...-. +..+ ..+|.|++|.+.+-....+--...+.++++|+.||+|++ ++..+ .+++++++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T---nI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT---NISNL-SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC---CccCc-HHHhccccH
Confidence 367777777654421 1112 457888888887533211111123567888888888888 55555 677888888
Q ss_pred CEEeccCCCCCccc--hhhhcCCCCceeeccCCCccccc--chHH---hcCCCcCcEEEeeccCCC
Q 039535 457 ELLDISHSSIEELP--EELKLLVNLKCLNLRWTDVLNKI--PRQL---ISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 457 ~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~l~~l--p~~~---~~~l~~L~~L~l~~~~~~ 515 (769)
+.|.+++-.+..-. ..+..+++|++||+|........ ...+ ...|++|+.|+.+++...
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 88888877666322 34778888888888876533321 2111 224677888888776654
No 211
>PRK10536 hypothetical protein; Provisional
Probab=97.47 E-value=0.00048 Score=66.84 Aligned_cols=44 Identities=14% Similarity=0.136 Sum_probs=37.8
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..+.+|......+..++.+ ...|+++|++|+|||+||.+++.+.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--~~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--KQLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999864 3499999999999999999988864
No 212
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.47 E-value=0.0011 Score=77.37 Aligned_cols=46 Identities=24% Similarity=0.395 Sum_probs=38.8
Q ss_pred ccccchHHHHHHHHHHhhc--------C-CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQSQLEQVWRCLIE--------E-SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~--------~-~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..++|.+..++.+.+.+.. + ..+++.++||+|+|||.+|+.+++.+
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999852 1 23468899999999999999999888
No 213
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.44 E-value=0.00034 Score=68.51 Aligned_cols=88 Identities=19% Similarity=0.238 Sum_probs=51.2
Q ss_pred HHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCC
Q 039535 29 QLEQVWRCLIE--ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWK 106 (769)
Q Consensus 29 ~~~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 106 (769)
.+..+.+...+ .+...++++|++|+|||+||.++++.+. .....+++++ ..+++..+...... .
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it------~~~l~~~l~~~~~~-----~ 149 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIIT------VADIMSAMKDTFSN-----S 149 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEE------HHHHHHHHHHHHhh-----c
Confidence 44444444432 2235788999999999999999999983 2234556663 34455544443310 1
Q ss_pred CccHHHHHHHHHHHhccceEEEEEccccc
Q 039535 107 SKSVEEKALDIFRSLREKRIVLLLDDIWE 135 (769)
Q Consensus 107 ~~~~~~~~~~l~~~l~~~~~llvlDd~~~ 135 (769)
... ...+.+.+.. .=+||+||+..
T Consensus 150 ~~~----~~~~l~~l~~-~dlLvIDDig~ 173 (244)
T PRK07952 150 ETS----EEQLLNDLSN-VDLLVIDEIGV 173 (244)
T ss_pred ccc----HHHHHHHhcc-CCEEEEeCCCC
Confidence 111 2233344443 33788899953
No 214
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0041 Score=65.11 Aligned_cols=161 Identities=22% Similarity=0.202 Sum_probs=86.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRS 120 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 120 (769)
+...|.+.|++|+|||+||+.++..- .|+.+--+..... ++.. .........+.+.+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S-----~FPFvKiiSpe~m-------------iG~s----EsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS-----DFPFVKIISPEDM-------------IGLS----ESAKCAHIKKIFEDA 594 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc-----CCCeEEEeChHHc-------------cCcc----HHHHHHHHHHHHHHh
Confidence 34567899999999999999998774 5665443321111 0110 111222233333444
Q ss_pred hccceEEEEEccccccccccc------------ccccCCCCCCCCcE--EEEEcCchhhhcccCC----CceEEeecCCH
Q 039535 121 LREKRIVLLLDDIWERLDLTK------------VGVPLPGPKNTTSK--VVFTTRFFDVCGSMEA----HRTFEVACLSE 182 (769)
Q Consensus 121 l~~~~~llvlDd~~~~~~~~~------------~~~~l~~~~~~~~~--iiittr~~~~~~~~~~----~~~~~l~~l~~ 182 (769)
-+..=-+||+||+...-+|.. +...+.+...+|.+ |+-||....++..++- ...|.++.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 455667999999964433332 22223322233333 3445555566655532 35688998887
Q ss_pred -HHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHh
Q 039535 183 -KDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAM 229 (769)
Q Consensus 183 -~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 229 (769)
++..+++.+.-.- .+.+.+..+++...++ +-..|+.+...+
T Consensus 675 ~~~~~~vl~~~n~f----sd~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 675 GEQLLEVLEELNIF----SDDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred hHHHHHHHHHccCC----CcchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 7777777765321 1233344455555544 333444444433
No 215
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.003 Score=59.49 Aligned_cols=201 Identities=16% Similarity=0.240 Sum_probs=105.2
Q ss_pred cccc-hHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 22 TLVG-LQSQLEQVWRCLIE-------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 22 ~~vg-R~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
+.|| -+.+++++.+.+.= ...+-|.++||+|.|||-||+++++.- ...|+.++..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgs--- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS--- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH---
Confidence 3455 46677777766531 245568899999999999999999885 2344445442
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc-cceEEEEEccccccc------------c----cccccccCCC-C
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLR-EKRIVLLLDDIWERL------------D----LTKVGVPLPG-P 149 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~llvlDd~~~~~------------~----~~~~~~~l~~-~ 149 (769)
++.+..... + ..+.+.++-.-+ .-+-+|+.|++|+.. + .-.+...+.+ .
T Consensus 216 -elvqk~ige----g--------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfe 282 (404)
T KOG0728|consen 216 -ELVQKYIGE----G--------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFE 282 (404)
T ss_pred -HHHHHHhhh----h--------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccc
Confidence 222222211 0 111222222222 236688888886421 0 0111222221 2
Q ss_pred CCCCcEEEEEcCchhhh-----cccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHH
Q 039535 150 KNTTSKVVFTTRFFDVC-----GSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVT 224 (769)
Q Consensus 150 ~~~~~~iiittr~~~~~-----~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 224 (769)
..+..+||.+|..-+++ ..-..+..+++++-+++.-.+++.-+....+....-.++.+++++....|.--.++-+
T Consensus 283 atknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vct 362 (404)
T KOG0728|consen 283 ATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCT 362 (404)
T ss_pred cccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhh
Confidence 34566788877654442 2223456789999999998999887765544333333344443333222222223333
Q ss_pred HHHH--hcCC---CCHHHHHHHHHHHh
Q 039535 225 IGRA--MASK---KTAEEWRHAIEELG 246 (769)
Q Consensus 225 ~~~~--l~~~---~~~~~~~~~l~~l~ 246 (769)
-|++ +++. -+.++++-+.....
T Consensus 363 eagm~alrerrvhvtqedfemav~kvm 389 (404)
T KOG0728|consen 363 EAGMYALRERRVHVTQEDFEMAVAKVM 389 (404)
T ss_pred hhhHHHHHHhhccccHHHHHHHHHHHH
Confidence 2322 2221 25667766554443
No 216
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.41 E-value=0.00042 Score=65.76 Aligned_cols=89 Identities=19% Similarity=0.203 Sum_probs=57.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC-CCHHHHHHHHHHHcCCCCCC-CCCccHHHHHHHHHH
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD-PRLEKIQEDIGKRIGLVDDS-WKSKSVEEKALDIFR 119 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~l~~ 119 (769)
+++++++||.|+||||.+.+++.++.. + ...+..++.... ....+-++.+++.++.+.-. ....+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~-~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKL-K--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHH-T--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhh-c--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 368999999999999999999999832 2 556777777654 45677788888888865321 122344455554445
Q ss_pred Hhccce-EEEEEccc
Q 039535 120 SLREKR-IVLLLDDI 133 (769)
Q Consensus 120 ~l~~~~-~llvlDd~ 133 (769)
....++ =++++|-.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 444433 26666766
No 217
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.005 Score=58.35 Aligned_cols=172 Identities=20% Similarity=0.266 Sum_probs=96.5
Q ss_pred ccccCCCC--ccccchHHHHHHHHHHhh-c------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEE
Q 039535 13 VADERPTE--RTLVGLQSQLEQVWRCLI-E------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVI 77 (769)
Q Consensus 13 ~~~~~~~~--~~~vgR~~~~~~l~~~l~-~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 77 (769)
.+++.|.+ +++=|-+..++++++++- . ...+-|..|||+|.|||-+|++.+.+- ...|-
T Consensus 161 evDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT---~aTFL--- 234 (424)
T KOG0652|consen 161 EVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT---NATFL--- 234 (424)
T ss_pred eeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc---cchHH---
Confidence 34555554 567889999999998863 1 234568899999999999999987764 22111
Q ss_pred EEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEcccccc------------cc----cc
Q 039535 78 WVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWER------------LD----LT 140 (769)
Q Consensus 78 w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~------------~~----~~ 140 (769)
.+...-+-++... .. ..+.+.-+..- ...+.+|++|+++.. .+ .-
T Consensus 235 -----------KLAgPQLVQMfIG------dG-AkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTML 296 (424)
T KOG0652|consen 235 -----------KLAGPQLVQMFIG------DG-AKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTML 296 (424)
T ss_pred -----------HhcchHHHhhhhc------ch-HHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHH
Confidence 1111111111111 11 11122222222 345889999998531 00 11
Q ss_pred cccccCCC-CCCCCcEEEEEcCchhh-----hcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHH
Q 039535 141 KVGVPLPG-PKNTTSKVVFTTRFFDV-----CGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELA 208 (769)
Q Consensus 141 ~~~~~l~~-~~~~~~~iiittr~~~~-----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~ 208 (769)
.+...+.+ ......+||.+|...++ +..-.-+..++++.-+++.-..+++-+........+-.+++++
T Consensus 297 ELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELa 370 (424)
T KOG0652|consen 297 ELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELA 370 (424)
T ss_pred HHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHh
Confidence 12222221 22345678877765443 3333345678888777777777777777665555555666644
No 218
>PRK04296 thymidine kinase; Provisional
Probab=97.40 E-value=0.00017 Score=68.46 Aligned_cols=114 Identities=18% Similarity=0.045 Sum_probs=63.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLR 122 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 122 (769)
.+++|+|++|.||||+|..++.+.. .....++.+.- ..+.......++++++...........++....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~---~~g~~v~i~k~--~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE---ERGMKVLVFKP--AIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HcCCeEEEEec--cccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 4678999999999999999999882 22334444421 111112233455555533221112334455555544 33
Q ss_pred cceEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCchhh
Q 039535 123 EKRIVLLLDDIWER--LDLTKVGVPLPGPKNTTSKVVFTTRFFDV 165 (769)
Q Consensus 123 ~~~~llvlDd~~~~--~~~~~~~~~l~~~~~~~~~iiittr~~~~ 165 (769)
++.-+||+|+++-. ++...+...+ ...+..||+|.+....
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l---~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL---DDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH---HHcCCeEEEEecCccc
Confidence 34458999999532 2233332221 2457789999887544
No 219
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=9.1e-05 Score=83.72 Aligned_cols=141 Identities=21% Similarity=0.166 Sum_probs=95.7
Q ss_pred CCCceEEEeecccchh-cccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCccchhhhcCCCCc
Q 039535 402 CPHLLTLFLDFNRELM-MIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEELPEELKLLVNLK 480 (769)
Q Consensus 402 ~~~L~~L~l~~~~~~~-~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 480 (769)
-.+|+.|++++...+. .-+......+|.|+.|.+++-.+... .+..-..++++|.+||+++++++.+ ..++.+++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch-hHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 4678999998876442 22233345689999999998632221 2223446789999999999999988 6799999999
Q ss_pred eeeccCCCccccc-chHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCChh
Q 039535 481 CLNLRWTDVLNKI-PRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYH 554 (769)
Q Consensus 481 ~L~l~~~~~l~~l-p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~ 554 (769)
.|.+.+-...... -.. +-+|++|+.||++.........- -....+.-..||+|+-|++++..+.
T Consensus 199 ~L~mrnLe~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~i---------i~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLID-LFNLKKLRVLDISRDKNNDDTKI---------IEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHhccCCCCCchhhHHH-HhcccCCCeeeccccccccchHH---------HHHHHHhcccCccccEEecCCcchh
Confidence 9999875532211 112 56899999999997765531100 0112333346899999999876653
No 220
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.39 E-value=0.0044 Score=63.55 Aligned_cols=49 Identities=24% Similarity=0.251 Sum_probs=35.8
Q ss_pred eEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHH
Q 039535 174 TFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLAL 222 (769)
Q Consensus 174 ~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 222 (769)
.+++++++.+|+..++.-.............+...+++....+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999888766554332333445567777779999644
No 221
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.39 E-value=1.8e-05 Score=67.13 Aligned_cols=107 Identities=16% Similarity=0.221 Sum_probs=70.8
Q ss_pred eEEEEeeccccccC----CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEE
Q 039535 384 RRLSLMQNQIKVLS----EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELL 459 (769)
Q Consensus 384 ~~l~l~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L 459 (769)
..+.|+++.+..+. .+.+..+|...+|++|. +.+.|..+-.+++.+..|++++| .+..+|..+..++.|+.|
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~n---eisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANN---EISDVPEELAAMPALRSL 105 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchh---hhhhchHHHhhhHHhhhc
Confidence 34445555443222 23556677777777776 66777666666777777777777 677777777777777777
Q ss_pred eccCCCCCccchhhhcCCCCceeeccCCCcccccch
Q 039535 460 DISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPR 495 (769)
Q Consensus 460 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~ 495 (769)
+++.|.+...|.-+..+.+|.+|+..+|. ...+|-
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~ 140 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDV 140 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcCCCCc-cccCcH
Confidence 77777777777766667777777777665 444543
No 222
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.38 E-value=0.0038 Score=63.51 Aligned_cols=149 Identities=13% Similarity=0.103 Sum_probs=80.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC-----CCCHHHHHHHHHHHcCCCCCCCCCccHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK-----DPRLEKIQEDIGKRIGLVDDSWKSKSVEEKAL 115 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~-----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 115 (769)
....+.||||+|+|||.+|+.++.++ .-. .+-++.+. -.+.+..++++. .
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el---g~~---~i~vsa~eL~sk~vGEsEk~IR~~F-------------------~ 201 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM---GIE---PIVMSAGELESENAGEPGKLIRQRY-------------------R 201 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc---CCC---eEEEEHHHhhcCcCCcHHHHHHHHH-------------------H
Confidence 45678999999999999999999998 222 12222111 011222222222 1
Q ss_pred HHHHH--hccceEEEEEccccccc------c--c------cccccc--------CC-----CCCCCCcEEEEEcCchhhh
Q 039535 116 DIFRS--LREKRIVLLLDDIWERL------D--L------TKVGVP--------LP-----GPKNTTSKVVFTTRFFDVC 166 (769)
Q Consensus 116 ~l~~~--l~~~~~llvlDd~~~~~------~--~------~~~~~~--------l~-----~~~~~~~~iiittr~~~~~ 166 (769)
...+. -++++++|++||+|... + . ..+... ++ .....+..||.||..++..
T Consensus 202 ~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~L 281 (413)
T PLN00020 202 EAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTL 281 (413)
T ss_pred HHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccC
Confidence 11111 14678999999996321 0 0 111111 11 0234566778888665431
Q ss_pred --cccC--CCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcch
Q 039535 167 --GSME--AHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPL 220 (769)
Q Consensus 167 --~~~~--~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 220 (769)
+... .... .+..-+.++-.+++..+....... .....+|++.+-|-|+
T Consensus 282 DpALlRpGRfDk-~i~lPd~e~R~eIL~~~~r~~~l~-----~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 282 YAPLIRDGRMEK-FYWAPTREDRIGVVHGIFRDDGVS-----REDVVKLVDTFPGQPL 333 (413)
T ss_pred CHhHcCCCCCCc-eeCCCCHHHHHHHHHHHhccCCCC-----HHHHHHHHHcCCCCCc
Confidence 1112 1111 234567788888888777654421 2345567777766664
No 223
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.38 E-value=0.0066 Score=63.57 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCC----HHHHHHHHHHHc
Q 039535 26 LQSQLEQVWRCLIE---ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPR----LEKIQEDIGKRI 98 (769)
Q Consensus 26 R~~~~~~l~~~l~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~----~~~~~~~l~~~l 98 (769)
|+.-.+.+.+.+.. +...+|+|.|+=|+|||++...+.+.+.........+++++.+...+ ...++.++..++
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l 80 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL 80 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence 34556667777764 35678999999999999999999999933212234556666555443 344455555544
No 224
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.38 E-value=0.0002 Score=65.28 Aligned_cols=124 Identities=22% Similarity=0.269 Sum_probs=74.1
Q ss_pred eEEEEeeccccccCCCCC-CCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCcccc-CCCCCCEEec
Q 039535 384 RRLSLMQNQIKVLSEVPT-CPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMS-KLGSLELLDI 461 (769)
Q Consensus 384 ~~l~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~-~l~~L~~L~l 461 (769)
+.+.+.+.++..+..++. ......++|+.|. +..++. |..+++|..|.+++| .+..+.+.+. .+++|..|.+
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNd-l~~l~~--lp~l~rL~tLll~nN---rIt~I~p~L~~~~p~l~~L~L 95 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDND-LRKLDN--LPHLPRLHTLLLNNN---RITRIDPDLDTFLPNLKTLIL 95 (233)
T ss_pred cccccccccccchhhccccccccceecccccc-hhhccc--CCCccccceEEecCC---cceeeccchhhhccccceEEe
Confidence 344455555544433322 3345667777666 555543 677788888888887 6666655543 4566788888
Q ss_pred cCCCCCccch--hhhcCCCCceeeccCCCccc--ccchHHhcCCCcCcEEEeeccC
Q 039535 462 SHSSIEELPE--ELKLLVNLKCLNLRWTDVLN--KIPRQLISNLSRVRVLRMFATG 513 (769)
Q Consensus 462 ~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~--~lp~~~~~~l~~L~~L~l~~~~ 513 (769)
.+|+|.++.+ -+..|+.|++|.+-+|..-. ..-..++..+++|+.|++.+..
T Consensus 96 tnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 96 TNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 8877775532 25566777777777775322 2223335567777777766544
No 225
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.38 E-value=0.00028 Score=68.14 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEe
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVV 81 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~ 81 (769)
-.++|.|++|+|||+++..+.... ...|..++++.-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 367799999999999999999887 667777666643
No 226
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.37 E-value=0.00098 Score=66.13 Aligned_cols=89 Identities=25% Similarity=0.270 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCC
Q 039535 26 LQSQLEQVWRCLIE-ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDS 104 (769)
Q Consensus 26 R~~~~~~l~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~ 104 (769)
+.+.+..+.+.... ++..-++++|++|+|||.||.++++++ ......+.+++ ..+++..+......
T Consensus 88 ~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l---~~~g~sv~f~~------~~el~~~Lk~~~~~---- 154 (254)
T COG1484 88 DKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNEL---LKAGISVLFIT------APDLLSKLKAAFDE---- 154 (254)
T ss_pred hHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHH---HHcCCeEEEEE------HHHHHHHHHHHHhc----
Confidence 44444444433221 355678899999999999999999999 23344566664 44555555555432
Q ss_pred CCCccHHHHHHHHHHHhccceEEEEEcccc
Q 039535 105 WKSKSVEEKALDIFRSLREKRIVLLLDDIW 134 (769)
Q Consensus 105 ~~~~~~~~~~~~l~~~l~~~~~llvlDd~~ 134 (769)
......+...+. +-=|+||||+.
T Consensus 155 ------~~~~~~l~~~l~-~~dlLIiDDlG 177 (254)
T COG1484 155 ------GRLEEKLLRELK-KVDLLIIDDIG 177 (254)
T ss_pred ------CchHHHHHHHhh-cCCEEEEeccc
Confidence 111122222221 12388999994
No 227
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0065 Score=63.02 Aligned_cols=154 Identities=15% Similarity=0.151 Sum_probs=85.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLR 122 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 122 (769)
|--.++||||.|||++++++|+.+ .|+.+. .......+-.+ +++++...
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L-----~ydIyd-LeLt~v~~n~d-Lr~LL~~t------------------------ 284 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL-----NYDIYD-LELTEVKLDSD-LRHLLLAT------------------------ 284 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc-----CCceEE-eeeccccCcHH-HHHHHHhC------------------------
Confidence 346799999999999999999998 344322 22222211122 44444332
Q ss_pred cceEEEEEccccccc-----------ccc---------cccccCC---CCCCCCcEEEEEcCchhh-----hcccCCCce
Q 039535 123 EKRIVLLLDDIWERL-----------DLT---------KVGVPLP---GPKNTTSKVVFTTRFFDV-----CGSMEAHRT 174 (769)
Q Consensus 123 ~~~~llvlDd~~~~~-----------~~~---------~~~~~l~---~~~~~~~~iiittr~~~~-----~~~~~~~~~ 174 (769)
..+-+||++|+|-.- ... .+...+. ..++.-..||+||...+. ...=+-+-.
T Consensus 285 ~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmh 364 (457)
T KOG0743|consen 285 PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMH 364 (457)
T ss_pred CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeE
Confidence 245688888886320 011 1111111 022223355667765433 221123456
Q ss_pred EEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHhcCCC
Q 039535 175 FEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAMASKK 233 (769)
Q Consensus 175 ~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~ 233 (769)
+.++-=+.++...++.+.++... .+ .+..+|.+...|.-+.=+.+++.+..++
T Consensus 365 I~mgyCtf~~fK~La~nYL~~~~--~h----~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 365 IYMGYCTFEAFKTLASNYLGIEE--DH----RLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred EEcCCCCHHHHHHHHHHhcCCCC--Cc----chhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 88888899999999998887643 22 3444555555665555556666554433
No 228
>PRK06526 transposase; Provisional
Probab=97.33 E-value=0.00017 Score=71.43 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+...++|+|++|+|||+||.+++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 44578999999999999999999887
No 229
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.33 E-value=0.0001 Score=70.26 Aligned_cols=44 Identities=27% Similarity=0.275 Sum_probs=18.9
Q ss_pred cccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCC
Q 039535 424 FQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIE 467 (769)
Q Consensus 424 ~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~ 467 (769)
|..+++|+.|.++.|.......++.....+++|++|++++|+|.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 33444555555555422222233333333455555555555443
No 230
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.0076 Score=62.21 Aligned_cols=91 Identities=13% Similarity=0.118 Sum_probs=54.1
Q ss_pred cceEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCc-hhhhcc-cCCCceEEeecCCHHHHHHHHHHHhccccC
Q 039535 123 EKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVFTTRF-FDVCGS-MEAHRTFEVACLSEKDAWELFQEKVGEETL 198 (769)
Q Consensus 123 ~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iiittr~-~~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~ 198 (769)
+++-++|+|+++... ..-.+..-+. ....++.+|++|.+ ..+... ....+.+.+.+++.++..+.+.+.. .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLE-EPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhc-CCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C-
Confidence 445588899997532 2222322232 23345555555544 444433 2345789999999999999998752 1
Q ss_pred CCchhHHHHHHHHHHHhCCcchHHHHH
Q 039535 199 KSDHDIAELAQTVAKKCGGLPLALVTI 225 (769)
Q Consensus 199 ~~~~~~~~~~~~i~~~~~G~Plai~~~ 225 (769)
.+ ...++..++|.|.....+
T Consensus 206 --~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 --AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred --Ch-----HHHHHHHcCCCHHHHHHH
Confidence 11 123567789999755444
No 231
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.31 E-value=0.0023 Score=67.08 Aligned_cols=148 Identities=14% Similarity=0.128 Sum_probs=82.9
Q ss_pred cccchHHHHHHHHHHhhc-CCceE-EEEEcCCCCcHHHHHHHHHhhhhhccC------------------CCCEEEEEEe
Q 039535 22 TLVGLQSQLEQVWRCLIE-ESAGI-IGLYGMGGVGKTTLLIHINNKFLESRT------------------NFDFVIWVVV 81 (769)
Q Consensus 22 ~~vgR~~~~~~l~~~l~~-~~~~~-v~I~G~~GiGKTtLa~~~~~~~~~~~~------------------~~~~~~w~~~ 81 (769)
.++|-+....++..+... ++.+. +.++||+|+||||+|.++++.+.-... ..+.+..++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 467888889999998874 44444 999999999999999999999821110 1123444443
Q ss_pred cCCCC---HHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccccc--cccccccCCCCCCCCcEE
Q 039535 82 SKDPR---LEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERLD--LTKVGVPLPGPKNTTSKV 156 (769)
Q Consensus 82 ~~~~~---~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~--~~~~~~~l~~~~~~~~~i 156 (769)
+.... ..+..+++.+....... .++.-++++|+++.... ...+...+. .....+.+
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~~------------------~~~~kviiidead~mt~~A~nallk~lE-ep~~~~~~ 142 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESPL------------------EGGYKVVIIDEADKLTEDAANALLKTLE-EPPKNTRF 142 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCCC------------------CCCceEEEeCcHHHHhHHHHHHHHHHhc-cCCCCeEE
Confidence 33322 23333333333322110 35677999999975422 112221122 23345667
Q ss_pred EEEcCc-hhhhccc-CCCceEEeecCCHHHHHHH
Q 039535 157 VFTTRF-FDVCGSM-EAHRTFEVACLSEKDAWEL 188 (769)
Q Consensus 157 iittr~-~~~~~~~-~~~~~~~l~~l~~~e~~~l 188 (769)
|++|.. ..+...+ .....+++.+.+..+....
T Consensus 143 il~~n~~~~il~tI~SRc~~i~f~~~~~~~~i~~ 176 (325)
T COG0470 143 ILITNDPSKILPTIRSRCQRIRFKPPSRLEAIAW 176 (325)
T ss_pred EEEcCChhhccchhhhcceeeecCCchHHHHHHH
Confidence 776663 3333322 3345677777444333333
No 232
>PRK07261 topology modulation protein; Provisional
Probab=97.30 E-value=0.00095 Score=62.11 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.|+|+|++|+||||||+.++...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998776
No 233
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.28 E-value=0.00046 Score=70.59 Aligned_cols=46 Identities=22% Similarity=0.374 Sum_probs=41.0
Q ss_pred ccccchHHHHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQSQLEQVWRCLIE------ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~------~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+++|-++.++++++++.. ...++++|+||+|+||||||+.+++.+
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999864 235788999999999999999999998
No 234
>PRK09183 transposase/IS protein; Provisional
Probab=97.27 E-value=0.00042 Score=69.16 Aligned_cols=26 Identities=38% Similarity=0.436 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....+.|+|++|+|||+||..++...
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 34578899999999999999998876
No 235
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.27 E-value=0.00033 Score=72.82 Aligned_cols=135 Identities=16% Similarity=0.259 Sum_probs=70.2
Q ss_pred ccccceeEEEeccCCCccccccccccccccccceeeccccCcceEeeeeeccccccCCCccccccceEeecCcccccccc
Q 039535 565 LKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGLEELKIDYTEIAQKRREPFVFRSLRRVTMVSCHKLKDLT 644 (769)
Q Consensus 565 ~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~ 644 (769)
.+.+++.|.+++|. ++..+ .-..+|++|.+++|..|+.+.-. -.++|++|++.+|.++..+|
T Consensus 50 ~~~~l~~L~Is~c~-L~sLP-----~LP~sLtsL~Lsnc~nLtsLP~~------------LP~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 50 EARASGRLYIKDCD-IESLP-----VLPNELTEITIENCNNLTTLPGS------------IPEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HhcCCCEEEeCCCC-CcccC-----CCCCCCcEEEccCCCCcccCCch------------hhhhhhheEccCcccccccc
Confidence 34566777777662 22221 11235777777776666543210 12467777777775554332
Q ss_pred cccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCC-CcccccccccccccccccCCCCCC-CCcceEeecCCcc
Q 039535 645 FLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPF-ENLQNLDLSYLLALKSIYWKPLPF-TYLKEMVVNGCDQ 722 (769)
Q Consensus 645 ~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~-~~L~~L~i~~C~~ 722 (769)
++|+.|++.++ ... .+..+ ++|+.|.+.++......... ..+ ++|+.|.|.+|..
T Consensus 112 -----~sLe~L~L~~n-~~~----------------~L~~LPssLk~L~I~~~n~~~~~~lp-~~LPsSLk~L~Is~c~~ 168 (426)
T PRK15386 112 -----ESVRSLEIKGS-ATD----------------SIKNVPNGLTSLSINSYNPENQARID-NLISPSLKTLSLTGCSN 168 (426)
T ss_pred -----cccceEEeCCC-CCc----------------ccccCcchHhheeccccccccccccc-cccCCcccEEEecCCCc
Confidence 45666665432 111 11222 25777777543211111100 112 6899999999987
Q ss_pred CCCcCCCCCcccccceEEec
Q 039535 723 LKKLPLDSSCAEERKFVIRG 742 (769)
Q Consensus 723 L~~lp~~~~~~~l~~~~i~~ 742 (769)
+. +|.. ...+|+.+.+..
T Consensus 169 i~-LP~~-LP~SLk~L~ls~ 186 (426)
T PRK15386 169 II-LPEK-LPESLQSITLHI 186 (426)
T ss_pred cc-Cccc-ccccCcEEEecc
Confidence 64 5532 225677777764
No 236
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.26 E-value=0.0025 Score=75.12 Aligned_cols=60 Identities=23% Similarity=0.301 Sum_probs=45.1
Q ss_pred ccccchHHHHHHHHHHhhcC---------CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC
Q 039535 21 RTLVGLQSQLEQVWRCLIEE---------SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK 83 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~ 83 (769)
..++|.+..++.+...+... ...++.++||+|+|||++|+.+++.+ .......+.++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l---~~~~~~~i~~d~s~ 633 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL---FDDEDAMVRIDMSE 633 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---cCCCCcEEEEechh
Confidence 56899999999999998641 13468899999999999999999987 33333444455443
No 237
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.25 E-value=0.0007 Score=70.41 Aligned_cols=72 Identities=22% Similarity=0.345 Sum_probs=40.0
Q ss_pred cceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEe
Q 039535 381 ENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLD 460 (769)
Q Consensus 381 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~ 460 (769)
..++.|.++++.+..++.++ .+|++|.+++|..+..+|.. + .++|++|++++|. .+..+| .+|+.|+
T Consensus 52 ~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs--~L~sLP------~sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCP--EISGLP------ESVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCch-h--hhhhhheEccCcc--cccccc------cccceEE
Confidence 35566666666555554321 34777777766655555543 2 2467777777664 333444 3455566
Q ss_pred ccCCC
Q 039535 461 ISHSS 465 (769)
Q Consensus 461 l~~~~ 465 (769)
+.++.
T Consensus 119 L~~n~ 123 (426)
T PRK15386 119 IKGSA 123 (426)
T ss_pred eCCCC
Confidence 65543
No 238
>PRK06921 hypothetical protein; Provisional
Probab=97.24 E-value=0.00023 Score=71.22 Aligned_cols=39 Identities=28% Similarity=0.356 Sum_probs=29.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEe
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVV 81 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~ 81 (769)
....++++|++|+|||+||.++++.+.+ .....+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~--~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMR--KKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhh--hcCceEEEEEH
Confidence 3567899999999999999999999832 11345667653
No 239
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.23 E-value=0.00099 Score=62.92 Aligned_cols=128 Identities=16% Similarity=0.209 Sum_probs=63.0
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEec----CC-----CC----HHHHH
Q 039535 25 GLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVS----KD-----PR----LEKIQ 91 (769)
Q Consensus 25 gR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~----~~-----~~----~~~~~ 91 (769)
++..+....++++. ...+|++.|++|+|||.||.+.+.+... .+.+..++++.-. .. .+ ....+
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~-~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVK-EGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHH-TTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHH-hCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 45556666777775 4459999999999999999998877633 3677776665311 10 01 11112
Q ss_pred HHHHHHcCCCCCCCCCccHHHHHHH------HHHHhccc---eEEEEEcccccc--cccccccccCCCCCCCCcEEEEEc
Q 039535 92 EDIGKRIGLVDDSWKSKSVEEKALD------IFRSLREK---RIVLLLDDIWER--LDLTKVGVPLPGPKNTTSKVVFTT 160 (769)
Q Consensus 92 ~~l~~~l~~~~~~~~~~~~~~~~~~------l~~~l~~~---~~llvlDd~~~~--~~~~~~~~~l~~~~~~~~~iiitt 160 (769)
..+...+...- .....+..... -...++++ ..+||+|++++. .++..+...+ +.++++|++-
T Consensus 81 ~p~~d~l~~~~---~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~----g~~skii~~G 153 (205)
T PF02562_consen 81 RPIYDALEELF---GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI----GEGSKIIITG 153 (205)
T ss_dssp HHHHHHHTTTS----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-----TT-EEEEEE
T ss_pred HHHHHHHHHHh---ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc----CCCcEEEEec
Confidence 22222222111 11122222211 01223443 469999999764 4566665443 4689999887
Q ss_pred Cc
Q 039535 161 RF 162 (769)
Q Consensus 161 r~ 162 (769)
-.
T Consensus 154 D~ 155 (205)
T PF02562_consen 154 DP 155 (205)
T ss_dssp --
T ss_pred Cc
Confidence 64
No 240
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0077 Score=66.16 Aligned_cols=91 Identities=20% Similarity=0.267 Sum_probs=58.2
Q ss_pred ccccchHHHHHHHHHHhhc---------C---CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHH
Q 039535 21 RTLVGLQSQLEQVWRCLIE---------E---SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLE 88 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~---------~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 88 (769)
++.=|-++...+|.+-+.- . ++.=|.+|||+|.|||-+|++++-++ ..-|+.+..+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc--------sL~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC--------SLNFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc--------eeeEEeecCH----
Confidence 4456677778888777642 1 23457899999999999999999998 2344444332
Q ss_pred HHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEccccc
Q 039535 89 KIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWE 135 (769)
Q Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~ 135 (769)
+++.... ..+ ++-.+.++++- ...+++|+||++|.
T Consensus 740 ELLNMYV-----------GqS-E~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ELLNMYV-----------GQS-EENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHHHHh-----------cch-HHHHHHHHHHhhccCCeEEEeccccc
Confidence 2222111 122 23344444444 55899999999975
No 241
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.20 E-value=0.0032 Score=73.08 Aligned_cols=47 Identities=19% Similarity=0.359 Sum_probs=38.7
Q ss_pred CccccchHHHHHHHHHHhhc--------C-CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 20 ERTLVGLQSQLEQVWRCLIE--------E-SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~--------~-~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...++|.+..++.+...+.. + ...++.++||+|+|||++|+.+++.+
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 35689999999999888763 1 12467899999999999999999987
No 242
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.20 E-value=0.0015 Score=66.65 Aligned_cols=89 Identities=27% Similarity=0.259 Sum_probs=54.8
Q ss_pred chHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCC
Q 039535 25 GLQSQLEQVWRCLIE----ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGL 100 (769)
Q Consensus 25 gR~~~~~~l~~~l~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~ 100 (769)
+|....+...+++.+ ...+-+.|+|+.|+|||.||.++++.+. .....+.++.+ ..++..+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~---~~g~~v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA---KKGVSSTLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEEEH------HHHHHHHHHHHhc
Confidence 566666666666643 1345788999999999999999999983 22334555543 3455555554421
Q ss_pred CCCCCCCccHHHHHHHHHHHhccceEEEEEcccc
Q 039535 101 VDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIW 134 (769)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~ 134 (769)
....+ ..+.+. +-=||||||+.
T Consensus 206 -------~~~~~----~l~~l~-~~dlLiIDDiG 227 (306)
T PRK08939 206 -------GSVKE----KIDAVK-EAPVLMLDDIG 227 (306)
T ss_pred -------CcHHH----HHHHhc-CCCEEEEecCC
Confidence 11222 223332 33489999994
No 243
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0014 Score=64.35 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=53.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhcc--CCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHH
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESR--TNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFR 119 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 119 (769)
.+++.++||||.|||+|.+++++++ .++ +.+....-+.++. ..++..+... .+..+..+..++.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEins----hsLFSKWFsE--------SgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEINS----HSLFSKWFSE--------SGKLVAKMFQKIQE 243 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEeh----hHHHHHHHhh--------hhhHHHHHHHHHHH
Confidence 4788999999999999999999999 443 2333333333322 3444444433 44566777778888
Q ss_pred Hhccce--EEEEEcccc
Q 039535 120 SLREKR--IVLLLDDIW 134 (769)
Q Consensus 120 ~l~~~~--~llvlDd~~ 134 (769)
...++. +.+.+|+|.
T Consensus 244 Lv~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVE 260 (423)
T ss_pred HHhCCCcEEEEEeHHHH
Confidence 886654 456689985
No 244
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0046 Score=68.92 Aligned_cols=175 Identities=18% Similarity=0.201 Sum_probs=104.6
Q ss_pred ccccchHHHHHHHHHH---hhc-------C--CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHH
Q 039535 21 RTLVGLQSQLEQVWRC---LIE-------E--SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLE 88 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~---l~~-------~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 88 (769)
.++.|-++..++|.+. |++ + -++=|.|+||+|+|||-||++++-+. .+=|+.++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA--------gVPF~svSGS---- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSVSGS---- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc--------CCceeeechH----
Confidence 5678877766666555 443 1 23457899999999999999999997 2333344332
Q ss_pred HHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEcccccccc-----------------cccccccCCCCC
Q 039535 89 KIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERLD-----------------LTKVGVPLPGPK 150 (769)
Q Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~~-----------------~~~~~~~l~~~~ 150 (769)
++.+...... ...++.++..- ...+.++.+|++|...- +.++...+.+-.
T Consensus 379 ----EFvE~~~g~~--------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 379 ----EFVEMFVGVG--------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred ----HHHHHhcccc--------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 2222222111 22344444444 34588999999864211 222222222111
Q ss_pred -CCCcEEEEEcCchhhhcc--c---CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHH
Q 039535 151 -NTTSKVVFTTRFFDVCGS--M---EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLAL 222 (769)
Q Consensus 151 -~~~~~iiittr~~~~~~~--~---~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 222 (769)
..+..++-+|+..++... + +-+..+.++.-+..+-.++|.-++...... .+..++.+ |+..+-|++-|.
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHH
Confidence 234455556655544221 1 235678899999999999999998776633 33345565 999999988653
No 245
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.19 E-value=0.0013 Score=59.27 Aligned_cols=117 Identities=24% Similarity=0.160 Sum_probs=62.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC---CCHHHHHHHHHHHc---CCC-CCCCCCccHHH---
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD---PRLEKIQEDIGKRI---GLV-DDSWKSKSVEE--- 112 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~---~~~~~~~~~l~~~l---~~~-~~~~~~~~~~~--- 112 (769)
+.|-|++..|.||||.|...+.+. ..+...+.++.+-.. .+-...++.+ ..+ ... .......+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra---~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA---LGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHH
Confidence 578899999999999999998887 344455666554333 2233333332 000 000 00000111111
Q ss_pred ----HHHHHHHHhccce-EEEEEcccccc-----cccccccccCCCCCCCCcEEEEEcCchh
Q 039535 113 ----KALDIFRSLREKR-IVLLLDDIWER-----LDLTKVGVPLPGPKNTTSKVVFTTRFFD 164 (769)
Q Consensus 113 ----~~~~l~~~l~~~~-~llvlDd~~~~-----~~~~~~~~~l~~~~~~~~~iiittr~~~ 164 (769)
......+.+.... =++|||++-.. -+.+.+...+. ....+.-+|+|.|+.+
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~-~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLK-AKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHH-cCCCCCEEEEECCCCC
Confidence 2223334444433 49999999422 22333333333 3345678999999753
No 246
>PRK08118 topology modulation protein; Reviewed
Probab=97.18 E-value=0.00088 Score=61.98 Aligned_cols=35 Identities=34% Similarity=0.551 Sum_probs=27.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEE
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIW 78 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w 78 (769)
.|.|+|++|+||||+|+.+++.+.-..-+++..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 57899999999999999999998222244566665
No 247
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.17 E-value=0.00095 Score=72.54 Aligned_cols=72 Identities=25% Similarity=0.270 Sum_probs=53.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRS 120 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 120 (769)
..+++.++|++|+||||||+.++++. ...|+=|+.+...+...+-..|...+.... .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa------GYsVvEINASDeRt~~~v~~kI~~avq~~s-----------------~ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA------GYSVVEINASDERTAPMVKEKIENAVQNHS-----------------V 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc------CceEEEecccccccHHHHHHHHHHHHhhcc-----------------c
Confidence 44688999999999999999999986 234666788877777777766666654332 1
Q ss_pred h--ccceEEEEEccccc
Q 039535 121 L--REKRIVLLLDDIWE 135 (769)
Q Consensus 121 l--~~~~~llvlDd~~~ 135 (769)
+ .+++..+|+|++|-
T Consensus 382 l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDG 398 (877)
T ss_pred cccCCCcceEEEecccC
Confidence 2 26889999999963
No 248
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.16 E-value=0.0032 Score=73.92 Aligned_cols=46 Identities=26% Similarity=0.369 Sum_probs=38.2
Q ss_pred ccccchHHHHHHHHHHhhc--------CC-ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQSQLEQVWRCLIE--------ES-AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~--------~~-~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..++|.+..++.+...+.. ++ ..++.++|++|+|||++|+.+++.+
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999888863 11 1468899999999999999999887
No 249
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.16 E-value=0.00027 Score=63.52 Aligned_cols=42 Identities=31% Similarity=0.273 Sum_probs=31.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHH
Q 039535 45 IGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQE 92 (769)
Q Consensus 45 v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 92 (769)
|.|+|++|+|||+||+.+++.+ -....-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~------~~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL------GRPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH------TCEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh------hcceEEEEecccccccccee
Confidence 6799999999999999999997 22344567777767666653
No 250
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.15 E-value=5.9e-05 Score=64.10 Aligned_cols=108 Identities=28% Similarity=0.370 Sum_probs=77.7
Q ss_pred CceEEEeecccchhcccC--cccccCCcccEEEeeccCccccccCCcccc-CCCCCCEEeccCCCCCccchhhhcCCCCc
Q 039535 404 HLLTLFLDFNRELMMIAG--GYFQFMPSLKVLKISNIGYFNVLKLPLGMS-KLGSLELLDISHSSIEELPEELKLLVNLK 480 (769)
Q Consensus 404 ~L~~L~l~~~~~~~~i~~--~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~-~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 480 (769)
.+..++|+.|. +..+++ +.+.....|...+|++| .++.+|+.+. ..+.++.|++.+|.|+++|..+..++.|+
T Consensus 28 E~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N---~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr 103 (177)
T KOG4579|consen 28 ELHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDN---GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALR 103 (177)
T ss_pred Hhhhcccccch-hhHHHHHHHHHhCCceEEEEecccc---hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhh
Confidence 35567777775 444432 12455566777888888 7777887765 44578888888888888888888888888
Q ss_pred eeeccCCCcccccchHHhcCCCcCcEEEeeccCCCcc
Q 039535 481 CLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRF 517 (769)
Q Consensus 481 ~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~ 517 (769)
.|+++.|. +...|.- +-.+.+|-.|+..+|....+
T Consensus 104 ~lNl~~N~-l~~~p~v-i~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 104 SLNLRFNP-LNAEPRV-IAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred hcccccCc-cccchHH-HHHHHhHHHhcCCCCccccC
Confidence 89988887 5556654 44588888888887776644
No 251
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.14 E-value=0.0022 Score=63.02 Aligned_cols=45 Identities=24% Similarity=0.341 Sum_probs=34.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEK 89 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 89 (769)
...++.|+|++|+|||++|.+++.... .....++|++.. ......
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPER 66 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHH
Confidence 356899999999999999999998873 234678899877 444433
No 252
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0028 Score=68.68 Aligned_cols=160 Identities=19% Similarity=0.115 Sum_probs=89.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCC--CHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDP--RLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIF 118 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 118 (769)
..+.|.|.|+.|+|||.||+++++.+. ++....+.+++++.-. .++.+++-+- ..+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~-------------------~vfs 488 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLN-------------------NVFS 488 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHH-------------------HHHH
Confidence 346789999999999999999999983 4555566777766531 2222222111 2233
Q ss_pred HHhccceEEEEEcccccc--------cccc-----------cccccCCCCCCCCcEEEEEcCchhh-----hcccCCCce
Q 039535 119 RSLREKRIVLLLDDIWER--------LDLT-----------KVGVPLPGPKNTTSKVVFTTRFFDV-----CGSMEAHRT 174 (769)
Q Consensus 119 ~~l~~~~~llvlDd~~~~--------~~~~-----------~~~~~l~~~~~~~~~iiittr~~~~-----~~~~~~~~~ 174 (769)
+.+.-.+-+|||||++-. .++. ++...+. ..+....+|.|..+..- .+...-...
T Consensus 489 e~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~-~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~ 567 (952)
T KOG0735|consen 489 EALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYL-KRNRKIAVIATGQELQTLNPLLVSPLLFQIV 567 (952)
T ss_pred HHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHH-ccCcEEEEEEechhhhhcChhhcCccceEEE
Confidence 444557789999999621 1111 1111111 12222345555543221 111122346
Q ss_pred EEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCc-chHHHHH
Q 039535 175 FEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGL-PLALVTI 225 (769)
Q Consensus 175 ~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~ 225 (769)
..+.++...+-.+++...+...... ......+-++.+|+|. +.-+..+
T Consensus 568 ~~L~ap~~~~R~~IL~~~~s~~~~~---~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 568 IALPAPAVTRRKEILTTIFSKNLSD---ITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred EecCCcchhHHHHHHHHHHHhhhhh---hhhHHHHHHHHhcCCccchhHHHH
Confidence 7899999988888888777544411 1223344577888774 4444333
No 253
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.12 E-value=0.0021 Score=73.63 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=38.7
Q ss_pred ccccchHHHHHHHHHHhhc--------CC-ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQSQLEQVWRCLIE--------ES-AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~--------~~-~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..+||.+..++.+.+.+.. ++ ...+.++||+|+|||++|+.++..+
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999862 11 3468899999999999999999987
No 254
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.10 E-value=0.00043 Score=65.96 Aligned_cols=162 Identities=12% Similarity=0.100 Sum_probs=79.2
Q ss_pred cceeEEEEeeccccc--cC----CCCCCCCceEEEeecccchhc----cc------CcccccCCcccEEEeeccCccccc
Q 039535 381 ENVRRLSLMQNQIKV--LS----EVPTCPHLLTLFLDFNRELMM----IA------GGYFQFMPSLKVLKISNIGYFNVL 444 (769)
Q Consensus 381 ~~l~~l~l~~~~~~~--~~----~~~~~~~L~~L~l~~~~~~~~----i~------~~~~~~l~~L~~L~l~~~~~~~~~ 444 (769)
..+..+.|++|.+.. .. .+.+-.+|++.+++.-. .+. ++ ..++-+|++|+.++||+|-+ +..
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf-g~~ 107 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF-GSE 107 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeecccccc-Ccc
Confidence 456667777776621 11 12344556665555321 111 11 11244567777777777632 211
Q ss_pred cCC---ccccCCCCCCEEeccCCCCCccch--------------hhhcCCCCceeeccCCCcccccchHH----hcCCCc
Q 039535 445 KLP---LGMSKLGSLELLDISHSSIEELPE--------------ELKLLVNLKCLNLRWTDVLNKIPRQL----ISNLSR 503 (769)
Q Consensus 445 ~l~---~~~~~l~~L~~L~l~~~~i~~lp~--------------~~~~l~~L~~L~l~~~~~l~~lp~~~----~~~l~~ 503 (769)
..+ ..++....|.+|.+++|++..+.. ...+-+.|+.++...|. +...|... +..-.+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHHhhcC
Confidence 111 234555667777777775542211 12234566666666664 44444321 222246
Q ss_pred CcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCChhh
Q 039535 504 VRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHA 555 (769)
Q Consensus 504 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~ 555 (769)
|+++.+..|.+.+... .......+.-+.+|+.|++..+.++.
T Consensus 187 lk~vki~qNgIrpegv----------~~L~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 187 LKEVKIQQNGIRPEGV----------TMLAFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred ceeEEeeecCcCcchh----------HHHHHHHHHHhCcceeeeccccchhh
Confidence 6666666666653211 11223344556666666666555443
No 255
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0066 Score=58.87 Aligned_cols=172 Identities=19% Similarity=0.200 Sum_probs=94.4
Q ss_pred ccccchHHHHHHHHHHhh---------cCC---ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHH
Q 039535 21 RTLVGLQSQLEQVWRCLI---------EES---AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLE 88 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~---------~~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 88 (769)
++.-|-+...+.|.++.. .++ -+-+.++||+|.|||.||++++-+. . .-|+.++..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---n-----STFFSvSSS---- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---N-----STFFSVSSS---- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---C-----CceEEeehH----
Confidence 567888888888887742 122 3568899999999999999999987 2 223344332
Q ss_pred HHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEcccccc---------cccc----cccccCCC--CCCC
Q 039535 89 KIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWER---------LDLT----KVGVPLPG--PKNT 152 (769)
Q Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~---------~~~~----~~~~~l~~--~~~~ 152 (769)
++...+. + +-+.+.+.+++.- ..++-+|++|++|.. +..+ .+.....+ ....
T Consensus 201 DLvSKWm---G---------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~ 268 (439)
T KOG0739|consen 201 DLVSKWM---G---------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDND 268 (439)
T ss_pred HHHHHHh---c---------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCC
Confidence 2222211 1 1133445555555 346889999999632 1111 12222221 3345
Q ss_pred CcEEEEEcCchhhhccc---CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcc
Q 039535 153 TSKVVFTTRFFDVCGSM---EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLP 219 (769)
Q Consensus 153 ~~~iiittr~~~~~~~~---~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 219 (769)
|..|+-+|.-+..+... +-...|.++.-....-..+|.-+.+.-.. .-.++..+.++++++|.-
T Consensus 269 gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~---~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 269 GVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPH---VLTEQDFKELARKTEGYS 335 (439)
T ss_pred ceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCcc---ccchhhHHHHHhhcCCCC
Confidence 66666666655443221 11233445444444445566666665432 122344556667776654
No 256
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.05 E-value=0.0048 Score=63.60 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+.++|+.|+|||++|+.+++.+
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHH
Confidence 4468899999999999999998886
No 257
>PRK04132 replication factor C small subunit; Provisional
Probab=97.03 E-value=0.0095 Score=68.48 Aligned_cols=157 Identities=11% Similarity=0.078 Sum_probs=92.8
Q ss_pred EEc--CCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-cc
Q 039535 47 LYG--MGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-RE 123 (769)
Q Consensus 47 I~G--~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~ 123 (769)
+.| |.++||||+|..+++++-. ......++-++.+...+...+ +.++.......+ + ..
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g-~~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~-----------------~~~~ 629 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFG-ENWRHNFLELNASDERGINVI-REKVKEFARTKP-----------------IGGA 629 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhc-ccccCeEEEEeCCCcccHHHH-HHHHHHHHhcCC-----------------cCCC
Confidence 457 9999999999999999711 111124666666654444433 233222110000 1 12
Q ss_pred ceEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCch-hhhcc-cCCCceEEeecCCHHHHHHHHHHHhccccCC
Q 039535 124 KRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVFTTRFF-DVCGS-MEAHRTFEVACLSEKDAWELFQEKVGEETLK 199 (769)
Q Consensus 124 ~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iiittr~~-~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~ 199 (769)
+.-++|+|+++... ....+...+. .....+.+|+++.+. .+... ......+++.+++.++..+.+...+...+..
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lE-ep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~ 708 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTME-MFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE 708 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhh-CCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC
Confidence 45799999997643 2333333333 223456666666553 33222 2346789999999999999988877544322
Q ss_pred CchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 200 SDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 200 ~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
.+ ++....|+..++|.+..+-.+.
T Consensus 709 i~---~e~L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 709 LT---EEGLQAILYIAEGDMRRAINIL 732 (846)
T ss_pred CC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 22 3567789999999885443333
No 258
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.02 E-value=0.0026 Score=61.76 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=36.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQE 92 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 92 (769)
...++.|+|++|+|||+++.+++.... .....++|++... .....+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~---~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAA---RQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCC-CCHHHHHH
Confidence 356899999999999999999988872 3356789998865 44544443
No 259
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0096 Score=56.24 Aligned_cols=143 Identities=19% Similarity=0.249 Sum_probs=75.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHH
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFR 119 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 119 (769)
+..+-|.++||+|+|||.||+++++.- ...|-.+. . .++.+..+ ..++ .+.+.+++
T Consensus 187 dpprgvllygppg~gktml~kava~~t---~a~firvv-----g----sefvqkyl----gegp--------rmvrdvfr 242 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVV-----G----SEFVQKYL----GEGP--------RMVRDVFR 242 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhcc---chheeeec-----c----HHHHHHHh----ccCc--------HHHHHHHH
Confidence 456778899999999999999999986 22222221 1 12222222 2221 23333343
Q ss_pred Hh-ccceEEEEEccccccc------------ccc----cccccCCC-CCCCCcEEEEEcCchh-----hhcccCCCceEE
Q 039535 120 SL-REKRIVLLLDDIWERL------------DLT----KVGVPLPG-PKNTTSKVVFTTRFFD-----VCGSMEAHRTFE 176 (769)
Q Consensus 120 ~l-~~~~~llvlDd~~~~~------------~~~----~~~~~l~~-~~~~~~~iiittr~~~-----~~~~~~~~~~~~ 176 (769)
.- .+-+-++++|+++... +.. .+.....+ ....+.+||.+|...+ ++..-.-+..++
T Consensus 243 lakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkie 322 (408)
T KOG0727|consen 243 LAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIE 322 (408)
T ss_pred HHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCcccccccc
Confidence 33 3457889999986321 111 11122220 2234567777765432 222223356678
Q ss_pred eecCCHHHHHHHHHHHhccccCCCchhHHH
Q 039535 177 VACLSEKDAWELFQEKVGEETLKSDHDIAE 206 (769)
Q Consensus 177 l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~ 206 (769)
++.-+..+-.-+|...........+-+.+.
T Consensus 323 fplpdrrqkrlvf~titskm~ls~~vdle~ 352 (408)
T KOG0727|consen 323 FPLPDRRQKRLVFSTITSKMNLSDEVDLED 352 (408)
T ss_pred CCCCchhhhhhhHHhhhhcccCCcccCHHH
Confidence 876666666666666555444444433333
No 260
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.01 E-value=0.0011 Score=61.09 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=25.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCC
Q 039535 45 IGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDP 85 (769)
Q Consensus 45 v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~ 85 (769)
+.|.|++|+|||++|.+++... ...++++......
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~ 36 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAF 36 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcC
Confidence 6799999999999999998662 1245555444443
No 261
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.00 E-value=0.00052 Score=61.45 Aligned_cols=43 Identities=23% Similarity=0.294 Sum_probs=33.3
Q ss_pred cchHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 24 VGLQSQLEQVWRCLIE--ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 24 vgR~~~~~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
||+...++++.+.+.. .....|.|+|++|+||+++|+.+....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 5777888888888764 455678899999999999999887775
No 262
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.00 E-value=0.0026 Score=64.71 Aligned_cols=86 Identities=17% Similarity=0.183 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCC---CCCccHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDS---WKSKSVEEKALDI 117 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~l 117 (769)
..+++.|+|++|+||||||.+++...++ ....++|++.....+.. .+++++...+. ..+...++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~---~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 4568999999999999999999888732 34567788776654442 34555442211 1233445555555
Q ss_pred HHHhc-cceEEEEEcccc
Q 039535 118 FRSLR-EKRIVLLLDDIW 134 (769)
Q Consensus 118 ~~~l~-~~~~llvlDd~~ 134 (769)
....+ +..-++|+|.+.
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 44443 346689999983
No 263
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.00 E-value=0.0059 Score=69.46 Aligned_cols=170 Identities=19% Similarity=0.175 Sum_probs=90.3
Q ss_pred ccccchHHHHHHHHHHhh---c---------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHH
Q 039535 21 RTLVGLQSQLEQVWRCLI---E---------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLE 88 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~---~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 88 (769)
.++.|.+...+++.+.+. . .-.+-+.|+|++|+|||++|+.++.+. ...| +.++.+
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~------ 219 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGS------ 219 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehH------
Confidence 456787777666655442 1 112348899999999999999999887 2221 222211
Q ss_pred HHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccccc----------------cccccccCCC-CCC
Q 039535 89 KIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERLD----------------LTKVGVPLPG-PKN 151 (769)
Q Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~----------------~~~~~~~l~~-~~~ 151 (769)
.+.. .. ...........+.......+.++++|++|.... +..+...+.+ ...
T Consensus 220 ~~~~----~~-------~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~ 288 (644)
T PRK10733 220 DFVE----MF-------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 288 (644)
T ss_pred HhHH----hh-------hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC
Confidence 1111 00 011111122222222344678999999964310 1111111211 123
Q ss_pred CCcEEEEEcCchhhhc-cc----CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCC
Q 039535 152 TTSKVVFTTRFFDVCG-SM----EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGG 217 (769)
Q Consensus 152 ~~~~iiittr~~~~~~-~~----~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G 217 (769)
.+..+|.||..++... .+ .-+..+.++..+.++-.+++..+........+-. ...+++.+.|
T Consensus 289 ~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d----~~~la~~t~G 355 (644)
T PRK10733 289 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPG 355 (644)
T ss_pred CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCC----HHHHHhhCCC
Confidence 3555666776554321 11 2346788999999999999988876544222222 2345655555
No 264
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0093 Score=66.29 Aligned_cols=154 Identities=18% Similarity=0.152 Sum_probs=86.5
Q ss_pred ccccchHHHHHHHHHHhh---c----------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 21 RTLVGLQSQLEQVWRCLI---E----------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~---~----------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
.+..|-+...+.+.+.+. . ...+.+.++||+|.|||.||++++... ..+|-.+.+-
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~-------- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKGS-------- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeCH--------
Confidence 445566666666555542 1 234478899999999999999999976 3343333221
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccccc-------------cccccccCCC-CCCCC
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERLD-------------LTKVGVPLPG-PKNTT 153 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~-------------~~~~~~~l~~-~~~~~ 153 (769)
+++... ...........+.......+.+|++|+++.... ...+...+.+ ....+
T Consensus 311 -~l~sk~-----------vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~ 378 (494)
T COG0464 311 -ELLSKW-----------VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEG 378 (494)
T ss_pred -HHhccc-----------cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCc
Confidence 111000 111222222222233356789999999964211 1122222221 22334
Q ss_pred cEEEEEcCchhhhcc-----cCCCceEEeecCCHHHHHHHHHHHhcccc
Q 039535 154 SKVVFTTRFFDVCGS-----MEAHRTFEVACLSEKDAWELFQEKVGEET 197 (769)
Q Consensus 154 ~~iiittr~~~~~~~-----~~~~~~~~l~~l~~~e~~~l~~~~~~~~~ 197 (769)
..||-+|..+..... -.-...+.++..+.++..++|..+.....
T Consensus 379 v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~ 427 (494)
T COG0464 379 VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKK 427 (494)
T ss_pred eEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccC
Confidence 445555554433221 12356789999999999999999987544
No 265
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.98 E-value=0.002 Score=75.68 Aligned_cols=46 Identities=22% Similarity=0.340 Sum_probs=38.4
Q ss_pred ccccchHHHHHHHHHHhhc--------CC-ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQSQLEQVWRCLIE--------ES-AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~--------~~-~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..++|.+..++.+...+.. ++ ..++.++||+|+|||+||+.+++.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 5689999999999988852 11 2356799999999999999999987
No 266
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.97 E-value=0.00065 Score=59.34 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999987
No 267
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.97 E-value=0.0028 Score=62.71 Aligned_cols=88 Identities=15% Similarity=0.181 Sum_probs=56.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCC----------------
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDS---------------- 104 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~---------------- 104 (769)
...++.|+|++|+|||+++.+++.... .....++|+.... ...++.+.+. +++....+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~---~~g~~~~y~~~e~--~~~~~~~~~~-~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL---KQGKKVYVITTEN--TSKSYLKQME-SVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH---hCCCEEEEEEcCC--CHHHHHHHHH-HCCCChhHHHhCCCceEEeccccc
Confidence 456899999999999999999987752 2456788888754 3455555542 33321100
Q ss_pred --CCCccHHHHHHHHHHHhcc-ceEEEEEcccc
Q 039535 105 --WKSKSVEEKALDIFRSLRE-KRIVLLLDDIW 134 (769)
Q Consensus 105 --~~~~~~~~~~~~l~~~l~~-~~~llvlDd~~ 134 (769)
......+.....+.+.... +.-++|+|.+.
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0122335566666666643 55589999984
No 268
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.95 E-value=0.026 Score=57.23 Aligned_cols=161 Identities=11% Similarity=0.061 Sum_probs=87.6
Q ss_pred HHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhhh-------hccCCCCEEEEEEecC-CCCHHHHHHHHHHHcC
Q 039535 29 QLEQVWRCLIEES-AGIIGLYGMGGVGKTTLLIHINNKFL-------ESRTNFDFVIWVVVSK-DPRLEKIQEDIGKRIG 99 (769)
Q Consensus 29 ~~~~l~~~l~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~-------~~~~~~~~~~w~~~~~-~~~~~~~~~~l~~~l~ 99 (769)
.++.+...+.+++ .++..++|+.|.||+++|..+++.+- ....+.+.+.+++... .....++ +++.+.+.
T Consensus 4 ~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~I-r~l~~~~~ 82 (299)
T PRK07132 4 WIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEF-LSAINKLY 82 (299)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHH-HHHHHHhc
Confidence 3455556665555 45667999999999999999988861 1112222333332111 1111111 12222221
Q ss_pred CCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccccc--cccccccCCCCCCCCcEEEEEc-Cchhhhcc-cCCCceE
Q 039535 100 LVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERLD--LTKVGVPLPGPKNTTSKVVFTT-RFFDVCGS-MEAHRTF 175 (769)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~--~~~~~~~l~~~~~~~~~iiitt-r~~~~~~~-~~~~~~~ 175 (769)
..+ .-.+.+-++|+|+++.... ...+...+. .....+.+|++| ....+... ....+.+
T Consensus 83 ~~~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LE-EPp~~t~~il~~~~~~kll~TI~SRc~~~ 144 (299)
T PRK07132 83 FSS-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIE-EPPKDTYFLLTTKNINKVLPTIVSRCQVF 144 (299)
T ss_pred cCC-----------------cccCCceEEEEecccccCHHHHHHHHHHhh-CCCCCeEEEEEeCChHhChHHHHhCeEEE
Confidence 110 0014667888898864422 223333343 333456666555 44444433 3456789
Q ss_pred EeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCC
Q 039535 176 EVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGG 217 (769)
Q Consensus 176 ~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G 217 (769)
++.++++++..+.+... +. + ++.+..++..++|
T Consensus 145 ~f~~l~~~~l~~~l~~~-~~-----~---~~~a~~~a~~~~~ 177 (299)
T PRK07132 145 NVKEPDQQKILAKLLSK-NK-----E---KEYNWFYAYIFSN 177 (299)
T ss_pred ECCCCCHHHHHHHHHHc-CC-----C---hhHHHHHHHHcCC
Confidence 99999999999888765 11 1 1335566666776
No 269
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.95 E-value=0.0041 Score=58.56 Aligned_cols=48 Identities=29% Similarity=0.421 Sum_probs=38.6
Q ss_pred CCccccchHHHHHHHHHHhhc---C-CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 19 TERTLVGLQSQLEQVWRCLIE---E-SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~---~-~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+-..++|-+...+.+++--.. + ..-.|.+||.-|+|||+|++++..++
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 346789988888888776432 2 34468999999999999999999998
No 270
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=7.2e-05 Score=71.35 Aligned_cols=101 Identities=24% Similarity=0.195 Sum_probs=66.0
Q ss_pred CCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCccc--hhhhcCCCC
Q 039535 402 CPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEELP--EELKLLVNL 479 (769)
Q Consensus 402 ~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L 479 (769)
+.+.+.|++.+|. +.+|. +..+|+.|++|.|+-| .+..+ ..+..|++|+.|+|+.|.|..+- ..+.++++|
T Consensus 18 l~~vkKLNcwg~~-L~DIs--ic~kMp~lEVLsLSvN---kIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDIS--ICEKMPLLEVLSLSVN---KISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCC-ccHHH--HHHhcccceeEEeecc---ccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 4556667777665 55554 2566777777777777 44444 34566777888888877776553 246677788
Q ss_pred ceeeccCCCcccccch----HHhcCCCcCcEEEe
Q 039535 480 KCLNLRWTDVLNKIPR----QLISNLSRVRVLRM 509 (769)
Q Consensus 480 ~~L~l~~~~~l~~lp~----~~~~~l~~L~~L~l 509 (769)
+.|-|..|...+.-+. .++..|++|+.|+-
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 8887877776554443 23556777777764
No 271
>PRK06696 uridine kinase; Validated
Probab=96.92 E-value=0.0014 Score=64.24 Aligned_cols=42 Identities=12% Similarity=0.231 Sum_probs=36.4
Q ss_pred chHHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 25 GLQSQLEQVWRCLIE---ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 25 gR~~~~~~l~~~l~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.|.+.+++|.+.+.+ ++..+|+|.|++|+||||+|+.+++.+
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 477888888888853 456789999999999999999999998
No 272
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.91 E-value=0.0064 Score=60.26 Aligned_cols=57 Identities=19% Similarity=0.234 Sum_probs=38.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhcc---CCCCEEEEEEecCCCCHHHHHHHHHHHc
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESR---TNFDFVIWVVVSKDPRLEKIQEDIGKRI 98 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~~~~~~~w~~~~~~~~~~~~~~~l~~~l 98 (769)
...++.|+|++|+|||++|.+++....... +....++|++........++. ++++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~ 77 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERF 77 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHh
Confidence 456889999999999999999986642111 113578999887765554443 333433
No 273
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.90 E-value=0.0058 Score=59.72 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=31.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD 84 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~ 84 (769)
...++.|+|++|+|||++|.+++.... .....++|++....
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~---~~g~~v~yi~~e~~ 58 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETA---GQGKKVAYIDTEGL 58 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCCC
Confidence 456889999999999999999998872 23446778875443
No 274
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.89 E-value=0.001 Score=63.57 Aligned_cols=110 Identities=15% Similarity=0.100 Sum_probs=56.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLR 122 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 122 (769)
+.+.|.|++|+||||++..++... .......++.-..+......-...+..+.. ...+.....+.+...++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~------vg~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTIEDPIEFVHESKRSLINQRE------VGLDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEEcCCccccccCccceeeecc------cCCCccCHHHHHHHHhc
Confidence 578999999999999999988887 222233333221111000000001111100 11111223444555566
Q ss_pred cceEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhh
Q 039535 123 EKRIVLLLDDIWERLDLTKVGVPLPGPKNTTSKVVFTTRFFDV 165 (769)
Q Consensus 123 ~~~~llvlDd~~~~~~~~~~~~~l~~~~~~~~~iiittr~~~~ 165 (769)
..+=++++|++.+.+........ ...|..++.|+...+.
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~----a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTA----AETGHLVMSTLHTNSA 111 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHH----HHcCCEEEEEecCCcH
Confidence 66779999999655443332221 1234557777765443
No 275
>PRK09354 recA recombinase A; Provisional
Probab=96.88 E-value=0.004 Score=63.93 Aligned_cols=96 Identities=17% Similarity=0.114 Sum_probs=59.7
Q ss_pred HHHHHHhh-c--CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCC---
Q 039535 31 EQVWRCLI-E--ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDS--- 104 (769)
Q Consensus 31 ~~l~~~l~-~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~--- 104 (769)
..|-.+|. . ...+++-|+|++|+||||||.+++...+ .....++|++.....+. ..++.++...+.
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~---~~G~~~~yId~E~s~~~-----~~a~~lGvdld~lli 117 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDP-----VYAKKLGVDIDNLLV 117 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchHH-----HHHHHcCCCHHHeEE
Confidence 33444454 2 2456889999999999999999988873 33467889987776554 234455432211
Q ss_pred CCCccHHHHHHHHHHHhc-cceEEEEEcccc
Q 039535 105 WKSKSVEEKALDIFRSLR-EKRIVLLLDDIW 134 (769)
Q Consensus 105 ~~~~~~~~~~~~l~~~l~-~~~~llvlDd~~ 134 (769)
..+...++....+....+ +..-+||+|.+-
T Consensus 118 ~qp~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 118 SQPDTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred ecCCCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 122344555554444443 345689999983
No 276
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.88 E-value=0.0036 Score=63.76 Aligned_cols=85 Identities=20% Similarity=0.196 Sum_probs=53.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCC---CCCccHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDS---WKSKSVEEKALDI 117 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~l 117 (769)
..+++-|+|++|+||||||.+++...++ ....++|++.....+.. .+++++...+. ..+.+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~---~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQK---LGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 4568899999999999999999888732 34567888876655542 34444432211 1223445555544
Q ss_pred HHHhc-cceEEEEEccc
Q 039535 118 FRSLR-EKRIVLLLDDI 133 (769)
Q Consensus 118 ~~~l~-~~~~llvlDd~ 133 (769)
....+ +..-++|+|.+
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 44443 34568999997
No 277
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.85 E-value=0.0073 Score=55.84 Aligned_cols=38 Identities=29% Similarity=0.465 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD 84 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~ 84 (769)
++.|+|++|+|||+++..++.... .....++|+.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~e~~ 38 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA---TKGGKVVYVDIEEE 38 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH---hcCCEEEEEECCcc
Confidence 367999999999999999999882 24456778776554
No 278
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.84 E-value=0.043 Score=53.05 Aligned_cols=223 Identities=13% Similarity=0.162 Sum_probs=117.6
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhc---cCCCCEEEEEEecCCC-CHHHHHHHHHH
Q 039535 21 RTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLES---RTNFDFVIWVVVSKDP-RLEKIQEDIGK 96 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---~~~~~~~~w~~~~~~~-~~~~~~~~l~~ 96 (769)
....++++....+......++.+...++||+|.||-|.+..+.+++.-. +-.....-|.+.+... .+..+-..---
T Consensus 13 ~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred hhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 3467888888888887765677899999999999999999888887210 1112223333222110 00000000000
Q ss_pred HcCCCC-CCCCCccHHHHHHHHHHH-----hccceE-EEEEcccccc-----cccccccccCCCCCCCCcEEEEEcCchh
Q 039535 97 RIGLVD-DSWKSKSVEEKALDIFRS-----LREKRI-VLLLDDIWER-----LDLTKVGVPLPGPKNTTSKVVFTTRFFD 164 (769)
Q Consensus 97 ~l~~~~-~~~~~~~~~~~~~~l~~~-----l~~~~~-llvlDd~~~~-----~~~~~~~~~l~~~~~~~~~iiittr~~~ 164 (769)
.+...+ ...+..-++++++...+. ..++++ ++|+-++++. +.++.-... ..+.+++|+...+.+
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk----Ys~~~RlIl~cns~S 168 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEK----YSSNCRLILVCNSTS 168 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHH----HhcCceEEEEecCcc
Confidence 000000 000111122222222211 123344 5566666532 222222222 234567776554422
Q ss_pred --hhcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHhcCC----------
Q 039535 165 --VCGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAMASK---------- 232 (769)
Q Consensus 165 --~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~---------- 232 (769)
+.+--...-.++++..+++|....+......+....+ .+++.+|+++++|+-.-.-.+....+-+
T Consensus 169 riIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~ 245 (351)
T KOG2035|consen 169 RIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQV 245 (351)
T ss_pred cchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCC
Confidence 1111122346899999999999999999887775554 5788899999998654333333322211
Q ss_pred CCHHHHHHHHHHHhcccC
Q 039535 233 KTAEEWRHAIEELGRSAS 250 (769)
Q Consensus 233 ~~~~~~~~~l~~l~~~~~ 250 (769)
-..-+|+-++++..+...
T Consensus 246 i~~~dWe~~i~e~a~~i~ 263 (351)
T KOG2035|consen 246 IPKPDWEIYIQEIARVIL 263 (351)
T ss_pred CCCccHHHHHHHHHHHHH
Confidence 124578877777665533
No 279
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.84 E-value=0.0086 Score=58.93 Aligned_cols=50 Identities=20% Similarity=0.239 Sum_probs=35.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhcc---CCCCEEEEEEecCCCCHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESR---TNFDFVIWVVVSKDPRLEKI 90 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~~~~~~~w~~~~~~~~~~~~ 90 (769)
...++.|+|++|+|||++|.+++....... ..-..++|++.....+...+
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl 70 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERL 70 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHH
Confidence 356899999999999999999987762111 01257889887765555444
No 280
>PTZ00494 tuzin-like protein; Provisional
Probab=96.83 E-value=0.079 Score=55.01 Aligned_cols=170 Identities=14% Similarity=0.077 Sum_probs=100.7
Q ss_pred ccccCCCCccccchHHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHH
Q 039535 13 VADERPTERTLVGLQSQLEQVWRCLIE---ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEK 89 (769)
Q Consensus 13 ~~~~~~~~~~~vgR~~~~~~l~~~l~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 89 (769)
....++.++.+|.|+++-..+-+.|.+ ..+++++++|.-|+|||+|.+..+.+. + -..+++++... ++
T Consensus 363 ~~~a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE-----~-~paV~VDVRg~---ED 433 (664)
T PTZ00494 363 GMLAAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE-----G-VALVHVDVGGT---ED 433 (664)
T ss_pred ccccccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc-----C-CCeEEEEecCC---cc
Confidence 334455678899999998888887765 467899999999999999999888875 1 23566776654 44
Q ss_pred HHHHHHHHcCCCCCCCCCccHHHHHH---HHHHHhccceEEEEEccccccccccccc---ccCCCCCCCCcEEEEEcCch
Q 039535 90 IQEDIGKRIGLVDDSWKSKSVEEKAL---DIFRSLREKRIVLLLDDIWERLDLTKVG---VPLPGPKNTTSKVVFTTRFF 163 (769)
Q Consensus 90 ~~~~l~~~l~~~~~~~~~~~~~~~~~---~l~~~l~~~~~llvlDd~~~~~~~~~~~---~~l~~~~~~~~~iiittr~~ 163 (769)
-++.+.+.++.+..+.=.+-.+-..+ .-.....++.-++|+-=- +..++..+. ..+. ....-|.|++----+
T Consensus 434 tLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLR-EGssL~RVYnE~vaLa-cDrRlCHvv~EVplE 511 (664)
T PTZ00494 434 TLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLR-EGSDLGRVYGEVVSLV-SDCQACHIVLAVPMK 511 (664)
T ss_pred hHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEec-cCCcHHHHHHHHHHHH-ccchhheeeeechHh
Confidence 56777888877543322222222222 222223455445554221 111111110 0111 222345666543333
Q ss_pred hhh---cccCCCceEEeecCCHHHHHHHHHHHh
Q 039535 164 DVC---GSMEAHRTFEVACLSEKDAWELFQEKV 193 (769)
Q Consensus 164 ~~~---~~~~~~~~~~l~~l~~~e~~~l~~~~~ 193 (769)
.+. ..+.....|.+++|+.++|.++.+...
T Consensus 512 SLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 512 ALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 221 112334679999999999999998765
No 281
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.83 E-value=0.012 Score=62.38 Aligned_cols=53 Identities=21% Similarity=0.406 Sum_probs=42.0
Q ss_pred cccchHHHHHHHHHHhh-----cC--CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEE
Q 039535 22 TLVGLQSQLEQVWRCLI-----EE--SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWV 79 (769)
Q Consensus 22 ~~vgR~~~~~~l~~~l~-----~~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~ 79 (769)
++--....++++.+||. .. +.+++.|+||+|+||||.++.++..+ .+..+-|.
T Consensus 83 eLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel-----g~~~~Ew~ 142 (634)
T KOG1970|consen 83 ELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL-----GYQLIEWS 142 (634)
T ss_pred HHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh-----Cceeeeec
Confidence 34446677888999987 22 45699999999999999999999887 55666776
No 282
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.81 E-value=0.0018 Score=68.91 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=39.8
Q ss_pred CccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...++||++.++.+...+..++ .|.|.|++|+|||++|+.++...
T Consensus 19 ~~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHh
Confidence 3579999999999999986444 78899999999999999999986
No 283
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.78 E-value=0.0062 Score=73.99 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..+-|.++||+|+|||.||+++|.+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 35568899999999999999999997
No 284
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.77 E-value=0.01 Score=54.04 Aligned_cols=27 Identities=33% Similarity=0.368 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+...++|+|++|.||||+.+.++...
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 345689999999999999999999887
No 285
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.76 E-value=0.0043 Score=56.68 Aligned_cols=116 Identities=19% Similarity=0.151 Sum_probs=62.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEE---EEEecCCCCHHHHHHHHHHHcCC----CCCCC---CCc---
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVI---WVVVSKDPRLEKIQEDIGKRIGL----VDDSW---KSK--- 108 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~---w~~~~~~~~~~~~~~~l~~~l~~----~~~~~---~~~--- 108 (769)
.+.|-|++..|.||||.|...+.+. ..+...++ |+......+-...++.+ .+.. ....+ ...
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra---~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~ 79 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRA---LGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADT 79 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHH---HHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHH
Confidence 4688899999999999999999887 33333443 44433222333333332 1100 00000 111
Q ss_pred -cHHHHHHHHHHHhccceE-EEEEccccc-----ccccccccccCCCCCCCCcEEEEEcCch
Q 039535 109 -SVEEKALDIFRSLREKRI-VLLLDDIWE-----RLDLTKVGVPLPGPKNTTSKVVFTTRFF 163 (769)
Q Consensus 109 -~~~~~~~~l~~~l~~~~~-llvlDd~~~-----~~~~~~~~~~l~~~~~~~~~iiittr~~ 163 (769)
...+......+.+...++ ++|||++-. .-+.+.+...+. ......-||+|-|..
T Consensus 80 ~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~-~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 80 AIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQ-ERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHH-hCCCCCEEEEECCCC
Confidence 122233334444444444 999999942 122333333333 344567899999975
No 286
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0065 Score=57.81 Aligned_cols=90 Identities=19% Similarity=0.270 Sum_probs=56.5
Q ss_pred ccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 21 RTLVGLQSQLEQVWRCLIE-------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
++.=|-.++++++-+...- +..+-|.++||+|.|||-+|++++++- .. +|+.+-.
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt---da-----cfirvig---- 244 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT---DA-----CFIRVIG---- 244 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc---Cc-----eEEeehh----
Confidence 4556788888888776531 345668899999999999999999986 22 2332211
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccc-eEEEEEcccc
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLREK-RIVLLLDDIW 134 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~llvlDd~~ 134 (769)
.++.+..-..+ ..+.+.+++.-+.+ -++++||+++
T Consensus 245 ----selvqkyvgeg--------armvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 245 ----SELVQKYVGEG--------ARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred ----HHHHHHHhhhh--------HHHHHHHHHHhcccceEEEEeeccc
Confidence 12222221111 23455566666554 5788899985
No 287
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.75 E-value=0.0007 Score=64.70 Aligned_cols=85 Identities=26% Similarity=0.285 Sum_probs=58.8
Q ss_pred cceeEEEEeeccccccCCCCCCCCceEEEeecc--cchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCE
Q 039535 381 ENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFN--RELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLEL 458 (769)
Q Consensus 381 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~ 458 (769)
..+..+++.+..+..+..++.+++|+.|.+|.| .....++.- ...+++|++|++++|++..+..++ .+..+.+|..
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccc-hhhhhcchhh
Confidence 456777777777788888999999999999998 433344332 466799999999999543333332 3345566666
Q ss_pred EeccCCCCC
Q 039535 459 LDISHSSIE 467 (769)
Q Consensus 459 L~l~~~~i~ 467 (769)
|++..|..+
T Consensus 121 Ldl~n~~~~ 129 (260)
T KOG2739|consen 121 LDLFNCSVT 129 (260)
T ss_pred hhcccCCcc
Confidence 666666544
No 288
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.74 E-value=0.012 Score=62.90 Aligned_cols=88 Identities=22% Similarity=0.221 Sum_probs=51.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC-CCHHHHHHHHHHHcCCCCCCC-CCccHHHHHHHHHH
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD-PRLEKIQEDIGKRIGLVDDSW-KSKSVEEKALDIFR 119 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~l~~ 119 (769)
..++.++|++|+||||++..++..+. ..+ ..+.-+++... ....+.++.++.+++.+.... ...+.........+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~-~~g--~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFK-KKG--LKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH-HcC--CeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 56889999999999999999999883 222 24444544432 234555666677766532211 12233333344444
Q ss_pred HhccceEEEEEccc
Q 039535 120 SLREKRIVLLLDDI 133 (769)
Q Consensus 120 ~l~~~~~llvlDd~ 133 (769)
...+. -++|+|..
T Consensus 172 ~~~~~-DvVIIDTA 184 (437)
T PRK00771 172 KFKKA-DVIIVDTA 184 (437)
T ss_pred HhhcC-CEEEEECC
Confidence 44433 45677766
No 289
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.74 E-value=0.0093 Score=61.10 Aligned_cols=59 Identities=22% Similarity=0.236 Sum_probs=42.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhc---cCCCCEEEEEEecCCCCHHHHHHHHHHHcCC
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLES---RTNFDFVIWVVVSKDPRLEKIQEDIGKRIGL 100 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~ 100 (769)
...++-|+|++|+|||+|+.+++-..+-. ......++|++....+.+.++.+ ++++++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 34678899999999999999887554211 12235799999888777777654 5566654
No 290
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.73 E-value=0.0061 Score=57.08 Aligned_cols=88 Identities=22% Similarity=0.182 Sum_probs=46.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCC-CHHHHHHHHHHHcCCCC-CCCCCccHHHHHHH-HHHH
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDP-RLEKIQEDIGKRIGLVD-DSWKSKSVEEKALD-IFRS 120 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~-l~~~ 120 (769)
++.++|++|+||||+++.++..+. .....++.++..... ...+.+.......+..- ......+..+.... +...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~---~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK---KKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHA 78 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---HCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999883 222345555544322 33333444444443221 11122344444333 3333
Q ss_pred hccceEEEEEcccc
Q 039535 121 LREKRIVLLLDDIW 134 (769)
Q Consensus 121 l~~~~~llvlDd~~ 134 (769)
..+..-++|+|...
T Consensus 79 ~~~~~d~viiDt~g 92 (173)
T cd03115 79 REENFDVVIVDTAG 92 (173)
T ss_pred HhCCCCEEEEECcc
Confidence 33333356677763
No 291
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.73 E-value=0.0075 Score=51.47 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=39.2
Q ss_pred ccccchHHHHHHHHHHhhc-------CCceEEEEEcCCCCcHHHHHHHHHhhhhhc
Q 039535 21 RTLVGLQSQLEQVWRCLIE-------ESAGIIGLYGMGGVGKTTLLIHINNKFLES 69 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 69 (769)
..++|.+-..+.+.+++.+ .+.-|+.++|++|+|||.+++.+++.+-+.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~ 80 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKS 80 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhc
Confidence 5688988888888777753 345577899999999999999999996443
No 292
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.71 E-value=0.011 Score=60.91 Aligned_cols=60 Identities=20% Similarity=0.159 Sum_probs=42.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhh---ccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCC
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLE---SRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLV 101 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~---~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~ 101 (769)
...++-|+|++|+|||+|+.+++-..+. .......++|++....+.+.++.+ ++++++..
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 3457789999999999999988755421 112235899999988888777655 55666543
No 293
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.71 E-value=0.0019 Score=69.55 Aligned_cols=46 Identities=26% Similarity=0.401 Sum_probs=40.9
Q ss_pred ccccchHHHHHHHHHHhh------cCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQSQLEQVWRCLI------EESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+++|-++.++++++.|. +.+.+++.++||+|+|||+||+.+++.+
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 468999999999999983 2456799999999999999999999988
No 294
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.69 E-value=0.0055 Score=56.88 Aligned_cols=119 Identities=19% Similarity=0.121 Sum_probs=63.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCC---CHHHHHHHH--HHHcCCCC-CCCCCcc-----
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDP---RLEKIQEDI--GKRIGLVD-DSWKSKS----- 109 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~---~~~~~~~~l--~~~l~~~~-~~~~~~~----- 109 (769)
..+.|.|+|..|-||||.|...+.+. ..+...+..+.+-... +-...++.+ +....... ..+...+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra---~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~ 97 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRA---VGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDI 97 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHH---HHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHH
Confidence 34689999999999999999998887 3444445555443322 333333321 00000000 0011111
Q ss_pred --HHHHHHHHHHHhccceE-EEEEccccc-----ccccccccccCCCCCCCCcEEEEEcCch
Q 039535 110 --VEEKALDIFRSLREKRI-VLLLDDIWE-----RLDLTKVGVPLPGPKNTTSKVVFTTRFF 163 (769)
Q Consensus 110 --~~~~~~~l~~~l~~~~~-llvlDd~~~-----~~~~~~~~~~l~~~~~~~~~iiittr~~ 163 (769)
..+......+.+.+.+| ++|||++-. .-+.+.+...+. .......||+|-|..
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~-~rp~~~evVlTGR~~ 158 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALN-ARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHH-cCCCCCEEEEECCCC
Confidence 11223334444544444 999999942 222333333343 344567899999975
No 295
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.67 E-value=0.0097 Score=59.26 Aligned_cols=57 Identities=23% Similarity=0.309 Sum_probs=41.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhc---cCCCCEEEEEEecCCCCHHHHHHHHHHHcC
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLES---RTNFDFVIWVVVSKDPRLEKIQEDIGKRIG 99 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~---~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~ 99 (769)
..++=|+|++|+|||+|+.+++-..+-. .+....++|++....+...++. +|+++.+
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 4577899999999999998887654211 2234589999988888877775 4566554
No 296
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.017 Score=63.28 Aligned_cols=174 Identities=16% Similarity=0.136 Sum_probs=95.0
Q ss_pred CccccchHHHHHHHHHHh---hc-------C-C-ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 20 ERTLVGLQSQLEQVWRCL---IE-------E-S-AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l---~~-------~-~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
-.+.-|.++..+++.+.+ ++ + . ++-|.++||+|.|||.||++++-+. .-.| ...+.. ++
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA---~VPF-----f~iSGS-~F 219 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSISGS-DF 219 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc---CCCc-----eeccch-hh
Confidence 356788888777776664 32 1 1 2357899999999999999999997 2221 111111 11
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccc------------c----ccccccccCCCCCC
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWER------------L----DLTKVGVPLPGPKN 151 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~------------~----~~~~~~~~l~~~~~ 151 (769)
. +.+ .............+..+.-++++++|++|.. + .+-++.....+-..
T Consensus 220 V-------emf-------VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~ 285 (596)
T COG0465 220 V-------EMF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG 285 (596)
T ss_pred h-------hhh-------cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC
Confidence 1 111 1112222333334444566899999999642 1 12223333331111
Q ss_pred -CCcEEEEEcCchhh-----hcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcch
Q 039535 152 -TTSKVVFTTRFFDV-----CGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPL 220 (769)
Q Consensus 152 -~~~~iiittr~~~~-----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 220 (769)
.+..|+..|..+++ +..-+-+..+.++..+-..-.+++.-++.......+-... .|++.+-|.-.
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~----~iAr~tpGfsG 356 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLK----KIARGTPGFSG 356 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHH----HHhhhCCCccc
Confidence 33344444433333 2222345678888888888888888777655543332222 26666666543
No 297
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.66 E-value=0.013 Score=60.48 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=41.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC-CCHHHHHHHHHHHcCCC
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD-PRLEKIQEDIGKRIGLV 101 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~l~~~l~~~ 101 (769)
.+++.++||.|+||||..+.++.++. ....-..+..++...- -+..+-++..++-++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~-~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp 262 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV-MLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVP 262 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH-hhccCcceEEEEeccchhhHHHHHHHHHHHhCCc
Confidence 68999999999999988888888772 2234456777776653 34555566666666654
No 298
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.64 E-value=0.001 Score=61.55 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+.|.|++|+|||++|..++.+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 58899999999999999998875
No 299
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.64 E-value=0.0045 Score=64.51 Aligned_cols=47 Identities=21% Similarity=0.283 Sum_probs=39.4
Q ss_pred CccccchHHHHHHHHHHhhcC--------------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 20 ERTLVGLQSQLEQVWRCLIEE--------------SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..++||.++..+.+..++... ..+.+.++||+|+|||++|+.++...
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999998776531 23678999999999999999999997
No 300
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.0055 Score=68.88 Aligned_cols=104 Identities=21% Similarity=0.273 Sum_probs=66.7
Q ss_pred ccccchHHHHHHHHHHhhc-------C--CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHH
Q 039535 21 RTLVGLQSQLEQVWRCLIE-------E--SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQ 91 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~-------~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 91 (769)
...+|.+..++.+.+++.. . ..++..+.||+|+|||.||++++..+ .+.-...+-++.|.- ..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy-----~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEY-----ME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHH-----HH
Confidence 5689999999999999863 1 23467789999999999999999998 444455555443321 12
Q ss_pred HHHHHHcCCCCCCCCCccHHHHHHHHHHHhccceE-EEEEccccc
Q 039535 92 EDIGKRIGLVDDSWKSKSVEEKALDIFRSLREKRI-VLLLDDIWE 135 (769)
Q Consensus 92 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-llvlDd~~~ 135 (769)
++-.+++-..+|.-...+ + -..+-+..+.+|| +|.||++..
T Consensus 563 kHsVSrLIGaPPGYVGye--e-GG~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYE--E-GGQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred HHHHHHHhCCCCCCceec--c-ccchhHhhhcCCCeEEEechhhh
Confidence 223333322222111111 1 3345566677777 888999964
No 301
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.63 E-value=0.0053 Score=65.31 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=36.9
Q ss_pred ccccchHHHHHHHHHHhhc-------C---------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQSQLEQVWRCLIE-------E---------SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~-------~---------~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+.+||.+..++.+..++.. . ..+.+.++||+|+|||++|+.++..+
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 5689999999988666521 0 12568999999999999999999876
No 302
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.63 E-value=0.0079 Score=62.59 Aligned_cols=89 Identities=24% Similarity=0.262 Sum_probs=53.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC-CCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD-PRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFR 119 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 119 (769)
..++++++|++|+||||++.+++.++.. +.....+..++.... ....+-++.+.+.++..... .....+. .....
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~-~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~--~~~~~~l-~~~l~ 211 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVM-RFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA--VKDGGDL-QLALA 211 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe--cCCcccH-HHHHH
Confidence 3568999999999999999999988621 212235666665442 34566667777777654321 1111122 23334
Q ss_pred HhccceEEEEEcccc
Q 039535 120 SLREKRIVLLLDDIW 134 (769)
Q Consensus 120 ~l~~~~~llvlDd~~ 134 (769)
.+.+.+ ++++|...
T Consensus 212 ~l~~~D-lVLIDTaG 225 (374)
T PRK14722 212 ELRNKH-MVLIDTIG 225 (374)
T ss_pred HhcCCC-EEEEcCCC
Confidence 455554 45588883
No 303
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.61 E-value=0.0058 Score=59.64 Aligned_cols=101 Identities=16% Similarity=0.172 Sum_probs=61.5
Q ss_pred ccccchHHHHHHHHHHhhc-------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHH
Q 039535 21 RTLVGLQSQLEQVWRCLIE-------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQED 93 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 93 (769)
..++|..-..+.++..+++ .+.-++.++|++|+||..+++.+++...+...+.+. .+.
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~---------------V~~ 146 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPF---------------VHH 146 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchh---------------HHH
Confidence 4568888888888887764 345578999999999999999999998332222221 222
Q ss_pred HHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEcccccc
Q 039535 94 IGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWER 136 (769)
Q Consensus 94 l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~ 136 (769)
+.....-+.+.......+++..++++.. .-+|-++|||++|..
T Consensus 147 fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 147 FVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred hhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 2222222211111122233333444444 347899999999754
No 304
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.56 E-value=0.0029 Score=55.75 Aligned_cols=25 Identities=44% Similarity=0.521 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKFL 67 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~~ 67 (769)
-.++|+|++|+||||++..+++.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHH
Confidence 3588999999999999999999983
No 305
>PHA00729 NTP-binding motif containing protein
Probab=96.56 E-value=0.0034 Score=60.04 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=29.0
Q ss_pred HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 31 EQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 31 ~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.++.+.+..++...++|+|++|+|||+||..+++++
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345555555566689999999999999999999986
No 306
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.52 E-value=0.015 Score=57.54 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=39.3
Q ss_pred HHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHH
Q 039535 32 QVWRCLIE--ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIG 95 (769)
Q Consensus 32 ~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 95 (769)
.|-+.+.. ....++.|.|++|+|||++|.+++.+.. .....++|+.... +...+.+.+.
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~---~~ge~~lyvs~ee--~~~~i~~~~~ 69 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGIYVALEE--HPVQVRRNMA 69 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEEEeeC--CHHHHHHHHH
Confidence 34444433 2456899999999999999999887751 2345677877654 4555555433
No 307
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.52 E-value=0.011 Score=62.11 Aligned_cols=84 Identities=23% Similarity=0.348 Sum_probs=48.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCC---CCccHHHHHHHHH
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSW---KSKSVEEKALDIF 118 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~l~ 118 (769)
..++.|.|++|+|||||+.+++.... .....++|++.... ...+ ..-+.+++...+.. ...+.++....+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 46899999999999999999998872 22346778765432 3332 22234454332211 1123333333332
Q ss_pred HHhccceEEEEEcccc
Q 039535 119 RSLREKRIVLLLDDIW 134 (769)
Q Consensus 119 ~~l~~~~~llvlDd~~ 134 (769)
..++-++|+|.+.
T Consensus 156 ---~~~~~lVVIDSIq 168 (372)
T cd01121 156 ---ELKPDLVIIDSIQ 168 (372)
T ss_pred ---hcCCcEEEEcchH
Confidence 2345678888873
No 308
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.027 Score=56.87 Aligned_cols=46 Identities=28% Similarity=0.327 Sum_probs=34.5
Q ss_pred ccccchHHHHHHHHHHhh-c-------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQSQLEQVWRCLI-E-------------ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~-~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.++=|-+..++.+.+... . ...+-|.++||+|.|||-+|.+++.+.
T Consensus 92 ~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea 151 (386)
T KOG0737|consen 92 DDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA 151 (386)
T ss_pred hhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc
Confidence 445566777777766642 0 234567899999999999999999997
No 309
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.52 E-value=0.016 Score=59.95 Aligned_cols=87 Identities=22% Similarity=0.236 Sum_probs=49.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCC-CHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDP-RLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFR 119 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 119 (769)
+.++++|+|++|+||||++..++..+. .....+..++..... ...+-++..+..++...- ...+...+.+.+ +
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~---~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL-~ 313 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH---GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRAL-T 313 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH---HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHH-H
Confidence 347899999999999999999998872 223345566655432 233334444445543321 122334444333 3
Q ss_pred Hhcc--ceEEEEEccc
Q 039535 120 SLRE--KRIVLLLDDI 133 (769)
Q Consensus 120 ~l~~--~~~llvlDd~ 133 (769)
.++. +.=++++|-.
T Consensus 314 ~lk~~~~~DvVLIDTa 329 (436)
T PRK11889 314 YFKEEARVDYILIDTA 329 (436)
T ss_pred HHHhccCCCEEEEeCc
Confidence 3322 2236677776
No 310
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.51 E-value=0.0038 Score=60.25 Aligned_cols=58 Identities=24% Similarity=0.240 Sum_probs=37.8
Q ss_pred HHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 29 QLEQVWRCLIE--ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 29 ~~~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
...++++.+.. ++..+|+|+|+||.|||||+..+...+ ..+++--.++-++-+.+.+.
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPSSp~tG 73 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPSSPFTG 73 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GGGGCC-
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCCCCCCC
Confidence 44455555543 567899999999999999999999999 43444456666665555443
No 311
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.51 E-value=0.014 Score=59.26 Aligned_cols=87 Identities=24% Similarity=0.336 Sum_probs=49.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCC-CHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDP-RLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFR 119 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 119 (769)
+.++++|+|++|+||||++..++..+.. ......+..++..... ....-+......++.... ...+..++ ....+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~-~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l-~~~l~ 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL-EHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKEL-RKALD 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-HcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHH-HHHHH
Confidence 3468999999999999999999988722 2122456666655432 234444455555554321 12233333 33334
Q ss_pred HhccceEEEEEcc
Q 039535 120 SLREKRIVLLLDD 132 (769)
Q Consensus 120 ~l~~~~~llvlDd 132 (769)
.+.+. =+|++|.
T Consensus 269 ~~~~~-d~vliDt 280 (282)
T TIGR03499 269 RLRDK-DLILIDT 280 (282)
T ss_pred HccCC-CEEEEeC
Confidence 44433 3666665
No 312
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.00013 Score=69.67 Aligned_cols=74 Identities=28% Similarity=0.429 Sum_probs=44.5
Q ss_pred EEEcCCccccCCCCCCCcceeEEEEeeccccccCCCCCCCCceEEEeecccchhccc-CcccccCCcccEEEeecc
Q 039535 364 LVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIA-GGYFQFMPSLKVLKISNI 438 (769)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~-~~~~~~l~~L~~L~l~~~ 438 (769)
+.+.++++.++.-...++.|+.|.|+-|+|..+..+..|++|+.|+|..|. |.++. -..++++++||.|.|..|
T Consensus 24 LNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 24 LNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred hcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccC
Confidence 455555666665555566666666666666666666666666666666665 43333 123566666666666665
No 313
>PRK14974 cell division protein FtsY; Provisional
Probab=96.48 E-value=0.024 Score=58.38 Aligned_cols=89 Identities=20% Similarity=0.147 Sum_probs=50.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC-CCHHHHHHHHHHHcCCCCCC-CCCccHHHHHHHHHH
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD-PRLEKIQEDIGKRIGLVDDS-WKSKSVEEKALDIFR 119 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~l~~ 119 (769)
..+++++|++|+||||+++.++..+. .....++.+..... .....-++..+..++..... ....+.........+
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~---~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLK---KNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH---HcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 56899999999999999999998872 22224444544332 23344456667777653211 122233332222222
Q ss_pred Hh--ccceEEEEEcccc
Q 039535 120 SL--REKRIVLLLDDIW 134 (769)
Q Consensus 120 ~l--~~~~~llvlDd~~ 134 (769)
.. .+.. ++++|...
T Consensus 217 ~~~~~~~D-vVLIDTaG 232 (336)
T PRK14974 217 HAKARGID-VVLIDTAG 232 (336)
T ss_pred HHHhCCCC-EEEEECCC
Confidence 22 2233 88888884
No 314
>PRK10867 signal recognition particle protein; Provisional
Probab=96.45 E-value=0.012 Score=62.80 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..++.++|++|+||||++..++..+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH
Confidence 5688999999999999999999887
No 315
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.44 E-value=0.0077 Score=56.56 Aligned_cols=36 Identities=25% Similarity=0.514 Sum_probs=28.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEE
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWV 79 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~ 79 (769)
...+|++.|++|+||||+|+.++..+ ...+..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 34589999999999999999999998 3344445555
No 316
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.43 E-value=0.0073 Score=59.75 Aligned_cols=93 Identities=19% Similarity=0.368 Sum_probs=55.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC-CCCHHHHHHHHHHHcCCCC-----CCCCCccHH--
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK-DPRLEKIQEDIGKRIGLVD-----DSWKSKSVE-- 111 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~l~~~l~~~~-----~~~~~~~~~-- 111 (769)
++.+.+.|.|.+|.|||+|+.++++.... .+.+.++++-++. ..++.++.+.+...-.... .........
T Consensus 67 g~GQr~~If~~~G~GKTtLa~~i~~~i~~--~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 67 AKGGKIGLFGGAGVGKTVLIMELINNIAK--AHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred ccCCEEEEecCCCCChhHHHHHHHHHHHh--cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 34567889999999999999999999732 2233455555554 4566667666654321110 000111111
Q ss_pred ---HHHHHHHHHh---ccceEEEEEcccc
Q 039535 112 ---EKALDIFRSL---REKRIVLLLDDIW 134 (769)
Q Consensus 112 ---~~~~~l~~~l---~~~~~llvlDd~~ 134 (769)
...-.+.+++ .++++|+++||+-
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 1122234444 3789999999983
No 317
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.42 E-value=0.011 Score=54.98 Aligned_cols=125 Identities=18% Similarity=0.170 Sum_probs=61.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhc--cCC---C--CEEEEEEecCCCCHHHHHHHHHHHcCCCCC----CCCCcc
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLES--RTN---F--DFVIWVVVSKDPRLEKIQEDIGKRIGLVDD----SWKSKS 109 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--~~~---~--~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~ 109 (769)
...+++|.|+.|+|||||.+.+....-+. ... + ..+.|+. + .+++..++.... .....+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~--q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID--Q--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh--H--------HHHHHHcCCCccccCCCcCcCC
Confidence 44689999999999999999885321000 000 0 0122221 1 456666665321 111122
Q ss_pred HHHH-HHHHHHHhccc--eEEEEEcccccc---cccccccccCCCCCCCCcEEEEEcCchhhhcccCCCceEEe
Q 039535 110 VEEK-ALDIFRSLREK--RIVLLLDDIWER---LDLTKVGVPLPGPKNTTSKVVFTTRFFDVCGSMEAHRTFEV 177 (769)
Q Consensus 110 ~~~~-~~~l~~~l~~~--~~llvlDd~~~~---~~~~~~~~~l~~~~~~~~~iiittr~~~~~~~~~~~~~~~l 177 (769)
-.+. .-.+...+-.+ +-++++|+.-.. ...+.+...+......+..||++|.+...... .+..+.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 2222 22344444455 678888998322 22222222222111235678888887665432 3344444
No 318
>PTZ00035 Rad51 protein; Provisional
Probab=96.41 E-value=0.028 Score=58.35 Aligned_cols=59 Identities=24% Similarity=0.247 Sum_probs=40.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhh---ccCCCCEEEEEEecCCCCHHHHHHHHHHHcCC
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLE---SRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGL 100 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~---~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~ 100 (769)
...++.|+|++|+|||+|+..++-..+. .......++|++....+...+ +.+++++.+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~ 178 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGL 178 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCC
Confidence 3568899999999999999988766521 111334678998777666655 3444555543
No 319
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.40 E-value=0.0044 Score=62.21 Aligned_cols=52 Identities=21% Similarity=0.263 Sum_probs=32.0
Q ss_pred HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 32 QVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 32 ~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
.+++.+... .+-|.++|++|+|||++++.+..++ ...-..+.-++.+...+.
T Consensus 24 ~ll~~l~~~-~~pvLl~G~~GtGKT~li~~~l~~l---~~~~~~~~~~~~s~~Tts 75 (272)
T PF12775_consen 24 YLLDLLLSN-GRPVLLVGPSGTGKTSLIQNFLSSL---DSDKYLVITINFSAQTTS 75 (272)
T ss_dssp HHHHHHHHC-TEEEEEESSTTSSHHHHHHHHHHCS---TTCCEEEEEEES-TTHHH
T ss_pred HHHHHHHHc-CCcEEEECCCCCchhHHHHhhhccC---CccccceeEeeccCCCCH
Confidence 334444334 4567899999999999999988776 222123444555554333
No 320
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.38 E-value=0.0061 Score=56.72 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.|.|.|++|+||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47799999999999999999996
No 321
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.38 E-value=0.006 Score=53.85 Aligned_cols=44 Identities=23% Similarity=0.443 Sum_probs=34.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCC
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLV 101 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~ 101 (769)
+|.|.|++|+||||+|+.+++++ . .. ++ +...+++++++.+++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---g--l~---~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---G--LK---LV------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---C--Cc---ee------eccHHHHHHHHHcCCC
Confidence 57899999999999999999998 1 11 11 2356789999998874
No 322
>PRK08233 hypothetical protein; Provisional
Probab=96.37 E-value=0.013 Score=55.26 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..+|+|.|++|+||||+|..++..+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999999987
No 323
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.37 E-value=0.021 Score=57.37 Aligned_cols=90 Identities=21% Similarity=0.183 Sum_probs=51.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCC-CHHHHHHHHHHHcCCCCC-CCCCccHHHH-HHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDP-RLEKIQEDIGKRIGLVDD-SWKSKSVEEK-ALDI 117 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~l~~~l~~~~~-~~~~~~~~~~-~~~l 117 (769)
+.+++.++|++|+||||++..++..+. .....+..++..... ...+-++.+.+..+.... .....+.... .+.+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~---~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK---KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 357889999999999999999998872 333467777665432 234445556666653311 0111222222 2333
Q ss_pred HHHhccceEEEEEccc
Q 039535 118 FRSLREKRIVLLLDDI 133 (769)
Q Consensus 118 ~~~l~~~~~llvlDd~ 133 (769)
.....+..=++++|-.
T Consensus 148 ~~~~~~~~D~ViIDT~ 163 (272)
T TIGR00064 148 QKAKARNIDVVLIDTA 163 (272)
T ss_pred HHHHHCCCCEEEEeCC
Confidence 3333333346777776
No 324
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.02 Score=58.67 Aligned_cols=97 Identities=25% Similarity=0.315 Sum_probs=56.8
Q ss_pred HHHHHHHhhcC--CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCC
Q 039535 30 LEQVWRCLIEE--SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKS 107 (769)
Q Consensus 30 ~~~l~~~l~~~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 107 (769)
+.++-..|..+ ...++.|-|.||||||||..+++.++. ... .+.+++..... .-.+--+++++...+. .-
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA---~~~-~vLYVsGEES~---~QiklRA~RL~~~~~~-l~ 150 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA---KRG-KVLYVSGEESL---QQIKLRADRLGLPTNN-LY 150 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH---hcC-cEEEEeCCcCH---HHHHHHHHHhCCCccc-eE
Confidence 34444444332 235889999999999999999999983 222 68888654432 2223334555543322 11
Q ss_pred ccHHHHHHHHHHHh-ccceEEEEEcccc
Q 039535 108 KSVEEKALDIFRSL-REKRIVLLLDDIW 134 (769)
Q Consensus 108 ~~~~~~~~~l~~~l-~~~~~llvlDd~~ 134 (769)
.-.+...+.+.+.+ ..++-++|+|-++
T Consensus 151 l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 151 LLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred EehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 12222233344444 3467799999984
No 325
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.35 E-value=0.024 Score=58.36 Aligned_cols=59 Identities=20% Similarity=0.211 Sum_probs=39.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhh---ccCCCCEEEEEEecCCCCHHHHHHHHHHHcCC
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLE---SRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGL 100 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~---~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~ 100 (769)
...++.|+|++|+|||+|+..++...+. .......++|++....+...+ +.++++..+.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 3568899999999999999998864311 111224679998877666665 3445555543
No 326
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.34 E-value=0.03 Score=58.08 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=41.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhcc---CCCCEEEEEEecCCCCHHHHHHHHHHHcC
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESR---TNFDFVIWVVVSKDPRLEKIQEDIGKRIG 99 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~~~~~~~w~~~~~~~~~~~~~~~l~~~l~ 99 (769)
...++-|+|++|+|||+++.+++...+... ..-..++|++....+...++.+. ++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~-~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM-AEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH-HHHcC
Confidence 356888999999999999999987752211 11247999998887777666543 44443
No 327
>PF13245 AAA_19: Part of AAA domain
Probab=96.34 E-value=0.0072 Score=47.19 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=25.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhc-cCCCCEEEEE
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLES-RTNFDFVIWV 79 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~w~ 79 (769)
+.++++|.|++|.|||+++.+.+.++... ......+..+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~ 48 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVL 48 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 45678899999999997766666555321 2223445544
No 328
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.34 E-value=0.0052 Score=55.24 Aligned_cols=36 Identities=28% Similarity=0.236 Sum_probs=28.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEE
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVV 80 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~ 80 (769)
..+|.|+|.+|+||||||+++.+++ ......+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L---~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL---FARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH---HHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEec
Confidence 3589999999999999999999999 33345566665
No 329
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.34 E-value=0.0086 Score=59.92 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=31.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK 83 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~ 83 (769)
...++.|+|++|+|||++|.+++.+.. .....+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence 446889999999999999999887752 2345677887764
No 330
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.32 E-value=0.012 Score=61.50 Aligned_cols=79 Identities=18% Similarity=0.162 Sum_probs=51.6
Q ss_pred CccccchHHHHHHHHHHhhc---------C-----CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEE-ecCC
Q 039535 20 ERTLVGLQSQLEQVWRCLIE---------E-----SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVV-VSKD 84 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~---------~-----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~-~~~~ 84 (769)
..+++|.+..++.+..++.. + ..+.+.++|++|+|||++|+.++..+....-..+...|.. .+..
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG 93 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCccc
Confidence 46789999999999888743 0 1367899999999999999999998721111222222222 2223
Q ss_pred CCHHHHHHHHHHHc
Q 039535 85 PRLEKIQEDIGKRI 98 (769)
Q Consensus 85 ~~~~~~~~~l~~~l 98 (769)
.+.....+.+....
T Consensus 94 ~d~e~~ir~L~~~A 107 (443)
T PRK05201 94 RDVESIIRDLVEIA 107 (443)
T ss_pred CCHHHHHHHHHHHH
Confidence 45556666665544
No 331
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.31 E-value=0.087 Score=54.02 Aligned_cols=59 Identities=12% Similarity=0.002 Sum_probs=39.3
Q ss_pred CCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHh
Q 039535 171 AHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAM 229 (769)
Q Consensus 171 ~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 229 (769)
....++++.++.+|+.+++.-............-++..+++.-..+|+|--+..++..+
T Consensus 402 pf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 402 PFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred CcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHHHHHHhc
Confidence 34678999999999999886655433222111114556678888899997776666554
No 332
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.30 E-value=0.024 Score=56.65 Aligned_cols=124 Identities=16% Similarity=0.081 Sum_probs=64.2
Q ss_pred HHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEE---ecCCCCHHHHHHHHHHHcCC-CCCC
Q 039535 30 LEQVWRCLIE-ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVV---VSKDPRLEKIQEDIGKRIGL-VDDS 104 (769)
Q Consensus 30 ~~~l~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~---~~~~~~~~~~~~~l~~~l~~-~~~~ 104 (769)
.+.++..+.+ ++...++|.|++|+|||||++.++.... ...+.+++. +....+. .++...... ....
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~v~~~d~~----~ei~~~~~~~~q~~ 169 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKKVGIVDER----SEIAGCVNGVPQHD 169 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEEeecchhH----HHHHHHhccccccc
Confidence 3344444433 3446889999999999999999998872 223334432 1111112 223222211 1100
Q ss_pred C-CCccH-H--HHHHHHHHHh-ccceEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhh
Q 039535 105 W-KSKSV-E--EKALDIFRSL-REKRIVLLLDDIWERLDLTKVGVPLPGPKNTTSKVVFTTRFFDV 165 (769)
Q Consensus 105 ~-~~~~~-~--~~~~~l~~~l-~~~~~llvlDd~~~~~~~~~~~~~l~~~~~~~~~iiittr~~~~ 165 (769)
. ...++ + .....+...+ ...+-++++|++.....+..+...+. .|..+|+||.....
T Consensus 170 ~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~----~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 170 VGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH----AGVSIIATAHGRDV 231 (270)
T ss_pred ccccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh----CCCEEEEEechhHH
Confidence 0 00000 0 0111222222 24678999999865554554544332 36779999986544
No 333
>PRK06547 hypothetical protein; Provisional
Probab=96.29 E-value=0.0064 Score=56.40 Aligned_cols=31 Identities=26% Similarity=0.199 Sum_probs=26.2
Q ss_pred HhhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 36 CLIEESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 36 ~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+......+|+|.|++|+||||+|+.+++..
T Consensus 9 ~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 9 RLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444667789999999999999999999876
No 334
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.29 E-value=0.0059 Score=56.56 Aligned_cols=42 Identities=24% Similarity=0.173 Sum_probs=32.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhcc-CCCCEEEEEEecCCCC
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESR-TNFDFVIWVVVSKDPR 86 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~w~~~~~~~~ 86 (769)
..++.+.||+|+|||.+|+.+++.+ . ......+-++.+.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l---~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELL---FVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHH---T-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHh---ccCCccchHHHhhhcccc
Confidence 3578899999999999999999998 4 4455666666655433
No 335
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.29 E-value=0.021 Score=60.96 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..++.++|++|+||||+|..++..+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4688999999999999999999886
No 336
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.28 E-value=0.014 Score=55.74 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=29.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccC-------CCCEEEEEEecCC
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRT-------NFDFVIWVVVSKD 84 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-------~~~~~~w~~~~~~ 84 (769)
..++.|+|++|+|||+++.+++........ ....++|++....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 358899999999999999999888843211 2347888876665
No 337
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.023 Score=55.04 Aligned_cols=46 Identities=28% Similarity=0.377 Sum_probs=36.9
Q ss_pred ccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQSQLEQVWRCLIE-------------ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+.=|-+..+++|.+...= ...+-|.+||++|.|||-||+++++.-
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT 243 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT 243 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc
Confidence 3456789999999888641 134567899999999999999999986
No 338
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.28 E-value=0.01 Score=56.86 Aligned_cols=192 Identities=19% Similarity=0.161 Sum_probs=128.1
Q ss_pred CCCCCCceEEEeecccchhccc----CcccccCCcccEEEeeccCccc--------cccCCccccCCCCCCEEeccCCCC
Q 039535 399 VPTCPHLLTLFLDFNRELMMIA----GGYFQFMPSLKVLKISNIGYFN--------VLKLPLGMSKLGSLELLDISHSSI 466 (769)
Q Consensus 399 ~~~~~~L~~L~l~~~~~~~~i~----~~~~~~l~~L~~L~l~~~~~~~--------~~~l~~~~~~l~~L~~L~l~~~~i 466 (769)
+..+..+..++||+|. ++.-. ...+.+-++|+..++++-..-. +.-+.+.+-.|++|+..+||.|-+
T Consensus 26 l~~~d~~~evdLSGNt-igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNT-IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCc-ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 3457889999999998 32211 2234567889999988752101 111223456799999999999977
Q ss_pred C-ccch----hhhcCCCCceeeccCCCcccccchHHhc-------------CCCcCcEEEeeccCCCccccccccccccC
Q 039535 467 E-ELPE----ELKLLVNLKCLNLRWTDVLNKIPRQLIS-------------NLSRVRVLRMFATGYDRFHEASEDSVLFG 528 (769)
Q Consensus 467 ~-~lp~----~~~~l~~L~~L~l~~~~~l~~lp~~~~~-------------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 528 (769)
. +.|. .+++-+.|++|.+++|. ++.+.-.-++ .-+.|+......|...+.+
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs---------- 173 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS---------- 173 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc----------
Confidence 6 4443 36788999999999997 5444321122 3467899988888876532
Q ss_pred CccchhhhhhcCCCceEEEEEeCChhh--HHHH-HhcccccccceeEEEeccCCCc--cccccccccccccccceeeccc
Q 039535 529 GGEVLIQELLGLKYLEVLELTLGSYHA--LQIL-LSSNKLKSCIRSLLLFGFRGTK--YFIDATAFADLKHLNELQIHDC 603 (769)
Q Consensus 529 ~~~~~~~~l~~l~~L~~l~l~~~~~~~--~~~l-~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~l~~~~~L~~L~l~~~ 603 (769)
-...-..+....+|+.+.+..+.+.. ...+ .-...++.+|+.|++.++.... .......+..++.|+.|.+..|
T Consensus 174 -~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 174 -KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred -HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 12234455666789999998776532 2333 3455667899999998765433 2333457778889999999987
No 339
>PRK07667 uridine kinase; Provisional
Probab=96.27 E-value=0.01 Score=56.57 Aligned_cols=37 Identities=22% Similarity=0.435 Sum_probs=29.4
Q ss_pred HHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 30 LEQVWRCLIE--ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 30 ~~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
++.+.+.+.. +...+|+|.|++|+||||+|+.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455555543 445789999999999999999999988
No 340
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.25 E-value=0.0075 Score=67.57 Aligned_cols=76 Identities=11% Similarity=0.136 Sum_probs=58.9
Q ss_pred CccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcC
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIG 99 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~ 99 (769)
-+.++|++..++.+...+.++ +.+.++|++|+||||+|+.+++.+. ...++..+|..- ...+...+++.+..+.+
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPN-PEDPNNPKIRTVPAGKG 104 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeC-CCcchHHHHHHHHHhcC
Confidence 367899999999988887644 4788999999999999999998872 223466777544 55678888888887665
Q ss_pred C
Q 039535 100 L 100 (769)
Q Consensus 100 ~ 100 (769)
.
T Consensus 105 ~ 105 (637)
T PRK13765 105 K 105 (637)
T ss_pred H
Confidence 4
No 341
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.25 E-value=0.014 Score=54.56 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|.|+.|+|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 44689999999999999999998876
No 342
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.24 E-value=0.011 Score=55.74 Aligned_cols=122 Identities=19% Similarity=0.205 Sum_probs=62.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC--CCCHHH------HHHHHHHHcCCCCC---CCCCcc
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK--DPRLEK------IQEDIGKRIGLVDD---SWKSKS 109 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~--~~~~~~------~~~~l~~~l~~~~~---~~~~~~ 109 (769)
...+++|.|+.|+|||||++.++... .. ..+.++++... ...... ...++++.++.... .....+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~---~~-~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL---KP-SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CC-CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 44689999999999999999998876 22 22333332111 111111 11224555554321 011122
Q ss_pred HHHH-HHHHHHHhccceEEEEEcccccc---cccccccccCCCCCCC-CcEEEEEcCchhhh
Q 039535 110 VEEK-ALDIFRSLREKRIVLLLDDIWER---LDLTKVGVPLPGPKNT-TSKVVFTTRFFDVC 166 (769)
Q Consensus 110 ~~~~-~~~l~~~l~~~~~llvlDd~~~~---~~~~~~~~~l~~~~~~-~~~iiittr~~~~~ 166 (769)
-.+. .-.+...+-..+-++++|+.-.. ...+.+...+...... +..||++|.+....
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2222 22345555667788999998422 2222222222211122 45778888776543
No 343
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.021 Score=57.84 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=35.4
Q ss_pred ccccchHHHHHHHHHHhh---------cC---CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQSQLEQVWRCLI---------EE---SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~---------~~---~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+++.|-++..+-|.++.- ++ .=+-|.++||+|.|||-||++++-+.
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 567787777777777642 11 12458899999999999999999998
No 344
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.23 E-value=0.0087 Score=52.26 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 28 SQLEQVWRCLIE--ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 28 ~~~~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
++..++-+.+.+ ....++++.|+.|+||||+++.+++.+
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344455454433 344589999999999999999999997
No 345
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.22 E-value=0.029 Score=60.48 Aligned_cols=89 Identities=25% Similarity=0.399 Sum_probs=47.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCC-CHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDP-RLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFR 119 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 119 (769)
..++++|+|++|+||||++.+++..+. .......+..++..... .....++.....++.... ...+...+ ....+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la-~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L-~~aL~ 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFA-AQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESL-LDLLE 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHH-HHHHH
Confidence 457899999999999999999988762 22223345555543322 222233333333333211 11222222 33334
Q ss_pred HhccceEEEEEcccc
Q 039535 120 SLREKRIVLLLDDIW 134 (769)
Q Consensus 120 ~l~~~~~llvlDd~~ 134 (769)
.+.+ .=+|++|...
T Consensus 425 ~l~~-~DLVLIDTaG 438 (559)
T PRK12727 425 RLRD-YKLVLIDTAG 438 (559)
T ss_pred Hhcc-CCEEEecCCC
Confidence 4443 3477888873
No 346
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.22 E-value=0.0061 Score=65.54 Aligned_cols=101 Identities=23% Similarity=0.240 Sum_probs=53.2
Q ss_pred HHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEE-EEEecC-CCCHHHHHHHHHHHcCCCC-CCC--
Q 039535 32 QVWRCLIE-ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVI-WVVVSK-DPRLEKIQEDIGKRIGLVD-DSW-- 105 (769)
Q Consensus 32 ~l~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~-w~~~~~-~~~~~~~~~~l~~~l~~~~-~~~-- 105 (769)
++++.+.. ++.....|+|++|+|||+|++.+++.... .+..+.+ .+-+.. ...+.++.+.+-..+-... +..
T Consensus 405 RvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~--n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~ 482 (672)
T PRK12678 405 RVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITT--NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 482 (672)
T ss_pred eeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhh--cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHH
Confidence 44455443 45567889999999999999999987632 2333333 333443 3344444333311111010 100
Q ss_pred CCccHHHHHHHHHHHh--ccceEEEEEcccc
Q 039535 106 KSKSVEEKALDIFRSL--REKRIVLLLDDIW 134 (769)
Q Consensus 106 ~~~~~~~~~~~l~~~l--~~~~~llvlDd~~ 134 (769)
.........-.+.+++ .++.+||++|++-
T Consensus 483 ~~~~~a~~ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 483 DHTTVAELAIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCch
Confidence 0011112222233444 6789999999993
No 347
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.21 E-value=0.025 Score=54.14 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....|+|.||+|+|||||...+.--.
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44589999999999999998775443
No 348
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.20 E-value=0.038 Score=58.14 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=53.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhcc-CCCCEEEEEEecCCC-CHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESR-TNFDFVIWVVVSKDP-RLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIF 118 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~w~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 118 (769)
..++++++|+.|+||||.+..++..+.... .....+..++..... ....-++.+++.++.+.. .....++....+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHH
Confidence 356899999999999999999998873221 233456666665532 233336666666665321 2223333333333
Q ss_pred HHhccceEEEEEcccc
Q 039535 119 RSLREKRIVLLLDDIW 134 (769)
Q Consensus 119 ~~l~~~~~llvlDd~~ 134 (769)
.+ ...-++++|.+.
T Consensus 251 -~~-~~~DlVLIDTaG 264 (388)
T PRK12723 251 -QS-KDFDLVLVDTIG 264 (388)
T ss_pred -Hh-CCCCEEEEcCCC
Confidence 33 334588889884
No 349
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.19 E-value=0.0043 Score=47.64 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+++|.|++|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 350
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.19 E-value=0.019 Score=60.82 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=37.6
Q ss_pred CccccchHHHHHHHHHHhhc-----------C-------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 20 ERTLVGLQSQLEQVWRCLIE-----------E-------SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~-----------~-------~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....||.++.++.+..++.. . ....+.++||+|+|||++|+.++..+
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 45679999999999776621 0 12478999999999999999999876
No 351
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.18 E-value=0.036 Score=54.56 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=30.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK 83 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~ 83 (769)
....+.|.|++|+|||+++.+++.+.. .....++|++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccC
Confidence 456899999999999999999877652 2345678887643
No 352
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.18 E-value=0.012 Score=61.49 Aligned_cols=62 Identities=21% Similarity=0.227 Sum_probs=46.8
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHH
Q 039535 21 RTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKI 90 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 90 (769)
..++|+++.+..+..++..++ .+.+.|++|+|||+||+++++.+ . ....++.+.......++
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l---~---~~~~~i~~t~~l~p~d~ 85 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARAL---G---LPFVRIQCTPDLLPSDL 85 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHh---C---CCeEEEecCCCCCHHHh
Confidence 348999999999988886444 78899999999999999999998 2 23445555555444444
No 353
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.18 E-value=0.035 Score=59.63 Aligned_cols=87 Identities=23% Similarity=0.268 Sum_probs=49.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCC-HHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHH
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPR-LEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRS 120 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 120 (769)
.++++++|++|+||||++..++..+. .......+..++...... ..+-++...+.++.... ......+....+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~-~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~-~ 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA-LLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALE-Q 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHH-H
Confidence 45889999999999999999988872 112334667776654321 22334444555554321 1222333333333 3
Q ss_pred hccceEEEEEccc
Q 039535 121 LREKRIVLLLDDI 133 (769)
Q Consensus 121 l~~~~~llvlDd~ 133 (769)
+.+ .=+|++|..
T Consensus 297 ~~~-~DlVlIDt~ 308 (424)
T PRK05703 297 LRD-CDVILIDTA 308 (424)
T ss_pred hCC-CCEEEEeCC
Confidence 333 356778866
No 354
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.02 Score=52.18 Aligned_cols=36 Identities=31% Similarity=0.476 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEE
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWV 79 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~ 79 (769)
....+.|+|+-|+|||||.+.++--+ +.....+.|-
T Consensus 27 ~Ge~~~i~G~NG~GKTtLLRilaGLl---~p~~G~v~~~ 62 (209)
T COG4133 27 AGEALQITGPNGAGKTTLLRILAGLL---RPDAGEVYWQ 62 (209)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHccc---CCCCCeEEec
Confidence 34588899999999999999998887 3333456664
No 355
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.17 E-value=0.0036 Score=53.06 Aligned_cols=23 Identities=39% Similarity=0.690 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhh
Q 039535 45 IGLYGMGGVGKTTLLIHINNKFL 67 (769)
Q Consensus 45 v~I~G~~GiGKTtLa~~~~~~~~ 67 (769)
|.|+|++|+|||++|..++..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998884
No 356
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.17 E-value=0.019 Score=60.84 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..+|.++|++|+||||++..++..+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999887
No 357
>PRK09099 type III secretion system ATPase; Provisional
Probab=96.17 E-value=0.014 Score=62.11 Aligned_cols=91 Identities=22% Similarity=0.256 Sum_probs=53.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCC-----CCCCCccHHH--
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVD-----DSWKSKSVEE-- 112 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~-----~~~~~~~~~~-- 112 (769)
.+...++|.|+.|+|||||++.++.... ....+++....+..+..++.+.+...-+... ..........
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~~----~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGTQ----CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 4556889999999999999999987651 1224555555555667666666654432211 0001111111
Q ss_pred ---HHHHHHHHh--ccceEEEEEcccc
Q 039535 113 ---KALDIFRSL--REKRIVLLLDDIW 134 (769)
Q Consensus 113 ---~~~~l~~~l--~~~~~llvlDd~~ 134 (769)
..-.+.+++ .++++|+++|++-
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~DslT 263 (441)
T PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSLT 263 (441)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 111233333 5789999999993
No 358
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.16 E-value=0.022 Score=58.72 Aligned_cols=88 Identities=19% Similarity=0.189 Sum_probs=53.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCC-CHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDP-RLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFR 119 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 119 (769)
+.++++|+|+.|+||||++..++..+. .....+.+++..+.. ...+-++..+..++.... ...+..+....+ +
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~---~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al-~ 278 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL---KQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAV-Q 278 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHH-H
Confidence 457899999999999999999998762 223467777776543 344555666666654321 123344443333 3
Q ss_pred Hhc--cceEEEEEcccc
Q 039535 120 SLR--EKRIVLLLDDIW 134 (769)
Q Consensus 120 ~l~--~~~~llvlDd~~ 134 (769)
.++ +..=+|++|-..
T Consensus 279 ~l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 279 YMTYVNCVDHILIDTVG 295 (407)
T ss_pred HHHhcCCCCEEEEECCC
Confidence 332 234567778773
No 359
>PRK05973 replicative DNA helicase; Provisional
Probab=96.16 E-value=0.032 Score=54.27 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=34.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDI 94 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 94 (769)
....++|.|++|+|||+++.+++.... .....+++++.... ..++.+.+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a---~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM---KSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEEeCC--HHHHHHHH
Confidence 345889999999999999999988762 22345677665543 44444444
No 360
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.16 E-value=0.0095 Score=58.40 Aligned_cols=59 Identities=27% Similarity=0.334 Sum_probs=42.1
Q ss_pred HHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHH
Q 039535 31 EQVWRCLIE--ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKI 90 (769)
Q Consensus 31 ~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 90 (769)
.+++..+.. ++..+|+|+|.||+|||||.-.+..++ ..+++--.++-|+-+.+.+...+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsi 98 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSI 98 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCccc
Confidence 455555543 567799999999999999999999999 44455456666666665544333
No 361
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.15 E-value=0.026 Score=54.97 Aligned_cols=125 Identities=16% Similarity=0.159 Sum_probs=71.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC-----CCCHHHHHHHHHHHcCCCCCC-----CCCcc
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK-----DPRLEKIQEDIGKRIGLVDDS-----WKSKS 109 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~-----~~~~~~~~~~l~~~l~~~~~~-----~~~~~ 109 (769)
.+..+++|+|.+|+||||+++.+..-. ....+.+++.... .....+...++++..+....- ..-..
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~----~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLE----EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCc----CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 345689999999999999999998886 2233344443221 223445566777777643211 01111
Q ss_pred HHHHHHHHHHHhccceEEEEEccccccc------ccccccccCCCCCCCCcEEEEEcCchhhhcccC
Q 039535 110 VEEKALDIFRSLREKRIVLLLDDIWERL------DLTKVGVPLPGPKNTTSKVVFTTRFFDVCGSME 170 (769)
Q Consensus 110 ~~~~~~~l~~~l~~~~~llvlDd~~~~~------~~~~~~~~l~~~~~~~~~iiittr~~~~~~~~~ 170 (769)
=+...-.+.+.+.-++-++|.|+.-+.- +...+...+. ...+...++.|.+-.+...+.
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq--~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ--EELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH--HHhCCeEEEEEEEHHhhhhhc
Confidence 1122223556667788899999984321 1112222221 223556778888777665543
No 362
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.15 E-value=0.012 Score=59.71 Aligned_cols=48 Identities=13% Similarity=0.155 Sum_probs=38.5
Q ss_pred CCCCccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 17 RPTERTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 17 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
|..++.|+=+.+....+..++.. .+.|.|.|++|+|||++|++++..+
T Consensus 41 p~~d~~y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla~~lA~~l 88 (327)
T TIGR01650 41 PDIDPAYLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHIEQIAARL 88 (327)
T ss_pred CCCCCCccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHH
Confidence 33455677777777788888853 3478899999999999999999998
No 363
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.15 E-value=0.0043 Score=54.72 Aligned_cols=22 Identities=36% Similarity=0.718 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 039535 45 IGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 45 v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
|+|.|++|+||||+|+.+.++.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999984
No 364
>PRK04328 hypothetical protein; Provisional
Probab=96.14 E-value=0.021 Score=56.80 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=30.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK 83 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~ 83 (769)
...++.|.|++|+|||+|+.+++.+. ......++|++...
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee 61 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEE 61 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeC
Confidence 45688999999999999999988775 22345677777655
No 365
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.034 Score=63.72 Aligned_cols=102 Identities=16% Similarity=0.179 Sum_probs=69.1
Q ss_pred ccccchHHHHHHHHHHhhc------C--CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHH
Q 039535 21 RTLVGLQSQLEQVWRCLIE------E--SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQE 92 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~------~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 92 (769)
...+|.++.+..+.+++.. + ......+.||.|+|||.||++++..+ .+..+..+-++.+.- ..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse~------~e 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSEF------QE 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhhh------hh
Confidence 4578999999999999864 1 23467899999999999999999998 666666676655442 22
Q ss_pred HHHHHcCCCCCCCCCccHHHHHHHHHHHhccceE-EEEEcccccc
Q 039535 93 DIGKRIGLVDDSWKSKSVEEKALDIFRSLREKRI-VLLLDDIWER 136 (769)
Q Consensus 93 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-llvlDd~~~~ 136 (769)
..++.... ...--.+...++.+.++.++| +|+|||++..
T Consensus 633 --vskligsp---~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 --VSKLIGSP---PGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred --hhhccCCC---cccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 22322221 112222344467777877765 7779999654
No 366
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.13 E-value=0.022 Score=59.92 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....++|+||+|+||||||+.++--+
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHccc
Confidence 44589999999999999999998776
No 367
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.12 E-value=0.0079 Score=56.25 Aligned_cols=26 Identities=42% Similarity=0.560 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....++|.|+.|+|||||++.++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998876
No 368
>PRK08149 ATP synthase SpaL; Validated
Probab=96.11 E-value=0.01 Score=62.89 Aligned_cols=89 Identities=18% Similarity=0.282 Sum_probs=51.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEec-CCCCHHHHHHHHHHHcCCCC-----CCCCCccH---
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVS-KDPRLEKIQEDIGKRIGLVD-----DSWKSKSV--- 110 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~l~~~l~~~~-----~~~~~~~~--- 110 (769)
.+...++|.|++|+|||||+..++... ..+.++...+. ...+..++............ ........
T Consensus 149 ~~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~ 223 (428)
T PRK08149 149 GVGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRC 223 (428)
T ss_pred ecCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHH
Confidence 345688999999999999999888764 22333333333 34566666666665432210 00011111
Q ss_pred --HHHHHHHHHHh--ccceEEEEEccc
Q 039535 111 --EEKALDIFRSL--REKRIVLLLDDI 133 (769)
Q Consensus 111 --~~~~~~l~~~l--~~~~~llvlDd~ 133 (769)
......+.+++ .++++|+++|++
T Consensus 224 ~a~~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 224 NAALVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEccch
Confidence 11122233333 578999999999
No 369
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.11 E-value=0.0089 Score=63.43 Aligned_cols=90 Identities=23% Similarity=0.261 Sum_probs=50.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcC-----CCCCCCCCccHH---
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIG-----LVDDSWKSKSVE--- 111 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~-----~~~~~~~~~~~~--- 111 (769)
.....++|+|++|+|||||++.++... .....+++.......++.++......... ..... ......
T Consensus 163 ~~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qs-d~~~~~r~~ 237 (450)
T PRK06002 163 CAGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATS-DESPMMRRL 237 (450)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcC-CCCHHHHHH
Confidence 344588999999999999998887664 22234555544445555555444433321 10000 111111
Q ss_pred --HHHHHHHHHh--ccceEEEEEcccc
Q 039535 112 --EKALDIFRSL--REKRIVLLLDDIW 134 (769)
Q Consensus 112 --~~~~~l~~~l--~~~~~llvlDd~~ 134 (769)
...-.+.+++ .++++|+++|++-
T Consensus 238 ~~~~a~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 238 APLTATAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchH
Confidence 1111233333 5789999999993
No 370
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.11 E-value=0.039 Score=54.96 Aligned_cols=89 Identities=19% Similarity=0.133 Sum_probs=54.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHH---HHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEE---KALDI 117 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~l 117 (769)
..+++=|+|+.|+|||++|.+++-..+ .....++|++..+..++..+..-....+....- ..+.+.++ .+..+
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq---~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v-~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQ---KPGGKAAFIDTEHALDPERAKQLGVDLLDNLLV-SQPDTGEQQLEIAEKL 134 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhh---cCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeE-ecCCCHHHHHHHHHHH
Confidence 446778999999999999999888873 333488999988888777665444432221110 12222222 23333
Q ss_pred HHHhccceEEEEEccc
Q 039535 118 FRSLREKRIVLLLDDI 133 (769)
Q Consensus 118 ~~~l~~~~~llvlDd~ 133 (769)
......+--|+|+|.+
T Consensus 135 ~~~~~~~i~LvVVDSv 150 (279)
T COG0468 135 ARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHhccCCCCEEEEecC
Confidence 3333333457788876
No 371
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.09 E-value=0.019 Score=64.72 Aligned_cols=75 Identities=13% Similarity=0.157 Sum_probs=52.7
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCC
Q 039535 21 RTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGL 100 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~ 100 (769)
++++|++..++.+...+..+ +.+.++|++|+|||++|+.+++.+. ...|..++++ .....+...+++.++..++.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~-~n~~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVY-PNPEDPNMPRIVEVPAGEGR 92 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEE-eCCCCCchHHHHHHHHhhch
Confidence 56899999999888887644 3677999999999999999999882 1122333333 22334566667777776653
No 372
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.08 E-value=0.0088 Score=63.35 Aligned_cols=91 Identities=23% Similarity=0.272 Sum_probs=52.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCC-----CCCCCccHHH--
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVD-----DSWKSKSVEE-- 112 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~-----~~~~~~~~~~-- 112 (769)
.+...++|.|++|+|||||++.++... .....++.....+..++.++.+..+..-+... ..........
T Consensus 138 ~~Gq~i~I~G~sG~GKTtLl~~I~~~~----~~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 138 CRGQRLGIFAGSGVGKSTLLSMLARNT----DADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCC----CCCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 344688999999999999998888775 12233444444455566666665544332111 0001111111
Q ss_pred ---HHHHHHHHh--ccceEEEEEcccc
Q 039535 113 ---KALDIFRSL--REKRIVLLLDDIW 134 (769)
Q Consensus 113 ---~~~~l~~~l--~~~~~llvlDd~~ 134 (769)
..-.+.+++ .++++|+++|++-
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~DslT 240 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 112234444 5789999999993
No 373
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.08 E-value=0.036 Score=57.41 Aligned_cols=58 Identities=17% Similarity=0.218 Sum_probs=40.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhc---cCCCCEEEEEEecCCCCHHHHHHHHHHHcC
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLES---RTNFDFVIWVVVSKDPRLEKIQEDIGKRIG 99 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~ 99 (769)
...++-|+|++|+|||+++.+++...+.. ...-..++|++....+...++. ++++..+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 35678899999999999999998876221 1112379999988877776654 3444444
No 374
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.07 E-value=0.0058 Score=59.51 Aligned_cols=23 Identities=39% Similarity=0.478 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.++|.|++|+||||+|+.+++++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999999987
No 375
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.07 E-value=0.045 Score=49.74 Aligned_cols=26 Identities=38% Similarity=0.418 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+.++.+|+|..|+|||||...++-.+
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~~~ 61 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAAGM 61 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHhhc
Confidence 56899999999999999999887665
No 376
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.05 E-value=0.011 Score=59.32 Aligned_cols=100 Identities=21% Similarity=0.185 Sum_probs=53.1
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCc
Q 039535 29 QLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSK 108 (769)
Q Consensus 29 ~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 108 (769)
.++.+..++ ....+.++|.|+.|+||||++..+..... .....++.+ ..+.+.. +.. ..++... +....
T Consensus 68 ~~~~l~~~~-~~~~GlilisG~tGSGKTT~l~all~~i~---~~~~~iiti--Edp~E~~--~~~-~~q~~v~--~~~~~ 136 (264)
T cd01129 68 NLEIFRKLL-EKPHGIILVTGPTGSGKTTTLYSALSELN---TPEKNIITV--EDPVEYQ--IPG-INQVQVN--EKAGL 136 (264)
T ss_pred HHHHHHHHH-hcCCCEEEEECCCCCcHHHHHHHHHhhhC---CCCCeEEEE--CCCceec--CCC-ceEEEeC--CcCCc
Confidence 334444444 34456899999999999999999888762 222233333 2211110 000 0111110 01112
Q ss_pred cHHHHHHHHHHHhccceEEEEEcccccccccccc
Q 039535 109 SVEEKALDIFRSLREKRIVLLLDDIWERLDLTKV 142 (769)
Q Consensus 109 ~~~~~~~~l~~~l~~~~~llvlDd~~~~~~~~~~ 142 (769)
+ ....+...++..+=.++++++.+.+....+
T Consensus 137 ~---~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~ 167 (264)
T cd01129 137 T---FARGLRAILRQDPDIIMVGEIRDAETAEIA 167 (264)
T ss_pred C---HHHHHHHHhccCCCEEEeccCCCHHHHHHH
Confidence 2 334445556677779999999766554433
No 377
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.04 E-value=0.035 Score=54.44 Aligned_cols=49 Identities=20% Similarity=0.227 Sum_probs=33.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDI 94 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 94 (769)
....+.|.|++|+||||+|.+++.... .....+++++ ...+..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~---~~g~~~~yi~--~e~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL---QNGYSVSYVS--TQLTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEEe--CCCCHHHHHHHH
Confidence 345899999999999999988877662 1224556665 333556666665
No 378
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.02 E-value=0.0056 Score=55.23 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+|.+.|++|+||||+|+.++...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 57899999999999999999887
No 379
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.00 E-value=0.02 Score=56.03 Aligned_cols=120 Identities=18% Similarity=0.212 Sum_probs=69.5
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC-CCHHHHHHHHHHHcCCCCC
Q 039535 25 GLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD-PRLEKIQEDIGKRIGLVDD 103 (769)
Q Consensus 25 gR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~l~~~l~~~~~ 103 (769)
|-.+.+.++.+ ...+.|.|+||.|+||||..+++.+.. ..+....+- ++..+ .-+..-.+.+..|-.
T Consensus 112 glP~i~~~~~~----~~~GLILVTGpTGSGKSTTlAamId~i---N~~~~~HIl-TIEDPIE~vh~skkslI~QRE---- 179 (353)
T COG2805 112 GLPPIVRELAE----SPRGLILVTGPTGSGKSTTLAAMIDYI---NKHKAKHIL-TIEDPIEYVHESKKSLINQRE---- 179 (353)
T ss_pred CCCHHHHHHHh----CCCceEEEeCCCCCcHHHHHHHHHHHH---hccCCcceE-EecCchHhhhcchHhhhhHHH----
Confidence 34444444333 567899999999999998888887777 444443222 22221 122223334443322
Q ss_pred CCCCccHHHHHHHHHHHhccceEEEEEcccccccccccccccCCCCCCCCcEEEEEcCc
Q 039535 104 SWKSKSVEEKALDIFRSLREKRIVLLLDDIWERLDLTKVGVPLPGPKNTTSKVVFTTRF 162 (769)
Q Consensus 104 ~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~~~~~~~~l~~~~~~~~~iiittr~ 162 (769)
...+...-...+...|++-+=+|++-++.+ .+.+...+. ....|..|+-|-..
T Consensus 180 --vG~dT~sF~~aLraALReDPDVIlvGEmRD---~ETi~~ALt-AAETGHLV~~TLHT 232 (353)
T COG2805 180 --VGRDTLSFANALRAALREDPDVILVGEMRD---LETIRLALT-AAETGHLVFGTLHT 232 (353)
T ss_pred --hcccHHHHHHHHHHHhhcCCCEEEEecccc---HHHHHHHHH-HHhcCCEEEEeccc
Confidence 334555666778888888777888887743 444444444 33446566655443
No 380
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.00 E-value=0.025 Score=61.32 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=35.4
Q ss_pred HHHHHHHhhcC--CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC
Q 039535 30 LEQVWRCLIEE--SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK 83 (769)
Q Consensus 30 ~~~l~~~l~~~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~ 83 (769)
+..+-+.+..+ ...++.|+|++|+|||||+.+++.... .....++|++...
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ee 118 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEE 118 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEccc
Confidence 33444444322 346889999999999999999998873 2234678887543
No 381
>PRK14527 adenylate kinase; Provisional
Probab=96.00 E-value=0.0087 Score=57.02 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|.|++|+||||+|+.+++++
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999887
No 382
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.98 E-value=0.0091 Score=61.50 Aligned_cols=47 Identities=19% Similarity=0.279 Sum_probs=38.6
Q ss_pred CccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
-+.++|.+..++.+.-.+...+.+.+.+.|++|+|||++|+.++.-+
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 46789999999988865543344578899999999999999998877
No 383
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.97 E-value=0.053 Score=56.14 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=41.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhh--cc-CCCCEEEEEEecCCCCHHHHHHHHHHHcCC
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLE--SR-TNFDFVIWVVVSKDPRLEKIQEDIGKRIGL 100 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~~-~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~ 100 (769)
...++-|+|++|+|||+++..++...+. .. .....++|++....+.+.++. +++++++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 3467889999999999999988765421 11 122379999998887777664 55666554
No 384
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.97 E-value=0.022 Score=53.85 Aligned_cols=78 Identities=21% Similarity=0.146 Sum_probs=44.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHH--HHHHHcCCCCCCCCCccHHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQE--DIGKRIGLVDDSWKSKSVEEKALDIF 118 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~l~ 118 (769)
+..+|+|.|.+|+||||+|+.++..+ ......++--+ +.....+ .........-+.....+.+...+.+.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~---~~~~~~~I~~D-----~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~ 78 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL---GVEKVVVISLD-----DYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLK 78 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh---CcCcceEeecc-----ccccchhhcCHhhcCCcCccChhhhcHHHHHHHHH
Confidence 34689999999999999999999998 32222222111 1111111 11111122222234556677777777
Q ss_pred HHhccceE
Q 039535 119 RSLREKRI 126 (769)
Q Consensus 119 ~~l~~~~~ 126 (769)
..+.++++
T Consensus 79 ~L~~g~~v 86 (218)
T COG0572 79 DLKQGKPV 86 (218)
T ss_pred HHHcCCcc
Confidence 77777763
No 385
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.96 E-value=0.0094 Score=51.69 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+.+.|+|-||+||||++.+++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 4568899999999999999999765
No 386
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.96 E-value=0.024 Score=49.97 Aligned_cols=102 Identities=18% Similarity=0.269 Sum_probs=39.3
Q ss_pred CCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCC-ccccCCCCCCEEeccCCCCCccchh-hhcC
Q 039535 399 VPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLP-LGMSKLGSLELLDISHSSIEELPEE-LKLL 476 (769)
Q Consensus 399 ~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l 476 (769)
|.++.+|+.+.+.. .+..++...|.++++|+.+.+.++ +..++ ..+..+.+|+.+.+.. .+..++.. +..+
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~----~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN----LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST----TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred HhCCCCCCEEEECC--CeeEeChhhccccccccccccccc----ccccceeeeecccccccccccc-ccccccccccccc
Confidence 44555555555542 244555555555555555555442 22222 2334444555555544 33333322 3345
Q ss_pred CCCceeeccCCCcccccchHHhcCCCcCcEEEee
Q 039535 477 VNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMF 510 (769)
Q Consensus 477 ~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~ 510 (769)
++|+.+++..+ +..++...+.++ +|+.+.+.
T Consensus 81 ~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 81 TNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred ccccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 55555555432 344444445554 55555554
No 387
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.95 E-value=0.025 Score=54.27 Aligned_cols=96 Identities=25% Similarity=0.405 Sum_probs=56.6
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC-CCHHHHHHHHHHHcCCCC------CC
Q 039535 33 VWRCLIE-ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD-PRLEKIQEDIGKRIGLVD------DS 104 (769)
Q Consensus 33 l~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~l~~~l~~~~------~~ 104 (769)
.++.+.. .+...+.|.|++|+|||+|+..+++.. .-+.++++-++.. .+..++.+++...-.... ..
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~ 79 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATS 79 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEET
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccc
Confidence 3455543 344678899999999999999999987 2344477766644 567777776654311100 00
Q ss_pred CCCccHHHH----HHHHHHHh--ccceEEEEEccc
Q 039535 105 WKSKSVEEK----ALDIFRSL--REKRIVLLLDDI 133 (769)
Q Consensus 105 ~~~~~~~~~----~~~l~~~l--~~~~~llvlDd~ 133 (769)
..+...... .-.+.+++ .++++++++||+
T Consensus 80 ~~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 80 DEPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETH
T ss_pred hhhHHHHhhhhccchhhhHHHhhcCCceeehhhhh
Confidence 011111111 11122222 789999999998
No 388
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.95 E-value=0.0062 Score=58.19 Aligned_cols=23 Identities=43% Similarity=0.647 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+|+|.|++|+||||+|+.++..+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L 23 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999998
No 389
>PTZ00301 uridine kinase; Provisional
Probab=95.94 E-value=0.007 Score=58.05 Aligned_cols=25 Identities=32% Similarity=0.628 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..+|+|.|++|+||||||+.+++++
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 3689999999999999999998887
No 390
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=95.94 E-value=0.03 Score=55.27 Aligned_cols=90 Identities=21% Similarity=0.293 Sum_probs=56.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhccC-------CCCEEEEEEecCC-CCHHHHHHHHHHHcCCCCCCCCCccH-----
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKFLESRT-------NFDFVIWVVVSKD-PRLEKIQEDIGKRIGLVDDSWKSKSV----- 110 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~-------~~~~~~w~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~----- 110 (769)
++.|+|++|+||||++...+-.+..-+. ....++++++.-. .++.+-++.+..+++..+......+.
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd~~G 170 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTDVSG 170 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhheecccccc
Confidence 5668899999999998776655533222 2346788877653 56788888899999876432111111
Q ss_pred ---------HHHHHHHHHHhcc-ceEEEEEccc
Q 039535 111 ---------EEKALDIFRSLRE-KRIVLLLDDI 133 (769)
Q Consensus 111 ---------~~~~~~l~~~l~~-~~~llvlDd~ 133 (769)
..+..+....+.+ ++-++|+|-+
T Consensus 171 aa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~ 203 (402)
T COG3598 171 AADESDVLSPKLYRRFEKILEQKRPDFVVIDPF 203 (402)
T ss_pred CCCccccccHHHHHHHHHHHHHhCCCeEEEcch
Confidence 1223334444444 4558888987
No 391
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.94 E-value=0.024 Score=52.85 Aligned_cols=27 Identities=26% Similarity=0.440 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.....++|.|+.|.|||||++.++...
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 345689999999999999999998886
No 392
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.93 E-value=0.011 Score=54.56 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=34.3
Q ss_pred ccchHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 23 LVGLQSQLEQVWRCLIE--ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 23 ~vgR~~~~~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+||....+.++.+.+.. .....|.|+|++|+||+.+|+.+.+.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 47888999999888864 344677899999999999999998864
No 393
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.92 E-value=0.026 Score=49.71 Aligned_cols=117 Identities=21% Similarity=0.320 Sum_probs=56.5
Q ss_pred CCCcceeEEEEeeccccccC--CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCC-ccccCCC
Q 039535 378 KGWENVRRLSLMQNQIKVLS--EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLP-LGMSKLG 454 (769)
Q Consensus 378 ~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~-~~~~~l~ 454 (769)
.+.++++.+.+.. .+..+. .|..+++|+.+.+..+ +..++...|.++++|+.+.+.++ ...++ ..+..+.
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~~----~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPNN----LKSIGDNAFSNCT 81 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETST----T-EE-TTTTTT-T
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccccc----ccccccccccccc
Confidence 3445677777663 344442 4677778888888653 67777777888888888888642 22333 3455678
Q ss_pred CCCEEeccCCCCCccchh-hhcCCCCceeeccCCCcccccchHHhcCCCcCc
Q 039535 455 SLELLDISHSSIEELPEE-LKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVR 505 (769)
Q Consensus 455 ~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~ 505 (769)
+|+.+.+..+ ++.++.. +..+ +|+.+.+..+ +..++...+.++++|+
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKLK 129 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG------
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccCC
Confidence 8888888665 5555443 4555 7887777653 5666666677776664
No 394
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.92 E-value=0.034 Score=52.26 Aligned_cols=26 Identities=35% Similarity=0.532 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....++|.|+.|+|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44689999999999999999998876
No 395
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.92 E-value=0.0094 Score=55.05 Aligned_cols=115 Identities=20% Similarity=0.235 Sum_probs=58.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCC--CHHHHHHHHHHHcCCCCCCCCCccHHH-HHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDP--RLEKIQEDIGKRIGLVDDSWKSKSVEE-KALDI 117 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~l 117 (769)
....++|.|+.|+|||||++.++... ....+.+++....-. +..... ...++... ..+-.+ ..-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~----qLS~G~~qrl~l 93 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDAR---RAGIAMVY----QLSVGERQMVEI 93 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHHH---hcCeEEEE----ecCHHHHHHHHH
Confidence 44689999999999999999998876 223344444321111 111111 11111110 022222 22234
Q ss_pred HHHhccceEEEEEcccccc---cccccccccCCCCCCCCcEEEEEcCchhhh
Q 039535 118 FRSLREKRIVLLLDDIWER---LDLTKVGVPLPGPKNTTSKVVFTTRFFDVC 166 (769)
Q Consensus 118 ~~~l~~~~~llvlDd~~~~---~~~~~~~~~l~~~~~~~~~iiittr~~~~~ 166 (769)
.+.+-..+-++++|+.... ...+.+...+......+..||++|.+....
T Consensus 94 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 94 ARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 4455566778889998432 222222222221112356788888776543
No 396
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.92 E-value=0.0097 Score=62.28 Aligned_cols=109 Identities=17% Similarity=0.100 Sum_probs=57.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHH-HHHHHHHHHcCCCCCCCCCccHHHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLE-KIQEDIGKRIGLVDDSWKSKSVEEKALDIFR 119 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 119 (769)
..+.+.|.|++|+||||+++.++... .......++. +..+.... .-...+..+.. ...........+..
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp~E~~~~~~~~~i~q~e------vg~~~~~~~~~l~~ 190 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDPIEYVHRNKRSLINQRE------VGLDTLSFANALRA 190 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCChhhhccCccceEEccc------cCCCCcCHHHHHHH
Confidence 45789999999999999999998876 2222333333 22211110 00000000000 11111223444556
Q ss_pred HhccceEEEEEcccccccccccccccCCCCCCCCcEEEEEcCch
Q 039535 120 SLREKRIVLLLDDIWERLDLTKVGVPLPGPKNTTSKVVFTTRFF 163 (769)
Q Consensus 120 ~l~~~~~llvlDd~~~~~~~~~~~~~l~~~~~~~~~iiittr~~ 163 (769)
.++..+=+|++|++.+.......... ...|..++.|....
T Consensus 191 ~lr~~pd~i~vgEird~~~~~~~l~a----a~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 191 ALREDPDVILIGEMRDLETVELALTA----AETGHLVFGTLHTN 230 (343)
T ss_pred hhccCCCEEEEeCCCCHHHHHHHHHH----HHcCCcEEEEEcCC
Confidence 67778889999999655444432221 22355566666643
No 397
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.92 E-value=0.035 Score=55.46 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+..++.|.|.+|+|||||+..+...+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999999997
No 398
>PRK05922 type III secretion system ATPase; Validated
Probab=95.91 E-value=0.018 Score=61.00 Aligned_cols=91 Identities=16% Similarity=0.244 Sum_probs=50.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCC-----CCCCccHHH--
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDD-----SWKSKSVEE-- 112 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~~~~~-- 112 (769)
.+...++|.|+.|+|||||++.++... .....++-.......+..+.+.+.......... .........
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 445678999999999999999998775 122222222223344555666555544322110 001111111
Q ss_pred ---HHHHHHHHh--ccceEEEEEcccc
Q 039535 113 ---KALDIFRSL--REKRIVLLLDDIW 134 (769)
Q Consensus 113 ---~~~~l~~~l--~~~~~llvlDd~~ 134 (769)
..-.+.+++ .++++|+++|++-
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslT 257 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 122233444 5789999999993
No 399
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.91 E-value=0.024 Score=55.98 Aligned_cols=95 Identities=15% Similarity=0.167 Sum_probs=57.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhh-ccCCCCEEEEEEecC-CCCHHHHHHHHHHHcCCCC-----CCCCCccHHH
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLE-SRTNFDFVIWVVVSK-DPRLEKIQEDIGKRIGLVD-----DSWKSKSVEE 112 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~~~~~~~~~w~~~~~-~~~~~~~~~~l~~~l~~~~-----~~~~~~~~~~ 112 (769)
++.+.+.|.|.+|+|||+|+..+++...- .+...+.++++-+++ ..+..++.+.+...-.... ..........
T Consensus 67 g~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 67 VRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 34567899999999999999998887620 112346677777665 4567777777765422110 0001111111
Q ss_pred -----HHHHHHHHh---ccceEEEEEcccc
Q 039535 113 -----KALDIFRSL---REKRIVLLLDDIW 134 (769)
Q Consensus 113 -----~~~~l~~~l---~~~~~llvlDd~~ 134 (769)
..-.+.+++ .++++|+++||+-
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 112234444 3689999999993
No 400
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=95.87 E-value=0.031 Score=59.75 Aligned_cols=91 Identities=23% Similarity=0.223 Sum_probs=50.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCC----CCCCCccHH----
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVD----DSWKSKSVE---- 111 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~---- 111 (769)
.....++|.|++|+|||||++.++... .....++........++.++..+....-.... .........
T Consensus 143 ~~Gq~~~I~G~sG~GKStLl~~I~~~~----~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~ 218 (422)
T TIGR02546 143 GEGQRIGIFAGAGVGKSTLLGMIARGA----SADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLK 218 (422)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhCCC----CCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHH
Confidence 445688999999999999999988875 12223333333334555555554443321110 000111111
Q ss_pred --HHHHHHHHHh--ccceEEEEEcccc
Q 039535 112 --EKALDIFRSL--REKRIVLLLDDIW 134 (769)
Q Consensus 112 --~~~~~l~~~l--~~~~~llvlDd~~ 134 (769)
.....+.+++ .++++++++|++-
T Consensus 219 ~~~~a~~~AE~f~~~g~~Vl~~~Dslt 245 (422)
T TIGR02546 219 AAYTATAIAEYFRDQGKRVLLMMDSLT 245 (422)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCch
Confidence 1222233444 5679999999993
No 401
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.87 E-value=0.091 Score=54.03 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=29.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEec
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVS 82 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~ 82 (769)
+..++.++|++|+||||++..++..+. .....+..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~---~~g~~V~Li~~D 151 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK---AQGKKVLLAAGD 151 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCeEEEEecC
Confidence 356899999999999999999999883 222345555543
No 402
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.87 E-value=0.037 Score=59.30 Aligned_cols=90 Identities=19% Similarity=0.172 Sum_probs=50.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHc------CCCCCCCCCcc----
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRI------GLVDDSWKSKS---- 109 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l------~~~~~~~~~~~---- 109 (769)
.....++|.|++|+|||||++.++... .....+++.......+..++.......- ........+..
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~----~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~ 231 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNT----SADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIK 231 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccc----CCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHH
Confidence 455689999999999999999888765 2223455554445555555544322211 10000001111
Q ss_pred HHHHHHHHHHHh--ccceEEEEEccc
Q 039535 110 VEEKALDIFRSL--REKRIVLLLDDI 133 (769)
Q Consensus 110 ~~~~~~~l~~~l--~~~~~llvlDd~ 133 (769)
.....-.+.+++ .++++|+++|++
T Consensus 232 ~~~~a~~iAEyfr~~g~~Vll~~Dsl 257 (438)
T PRK07721 232 GAYTATAIAEYFRDQGLNVMLMMDSV 257 (438)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCh
Confidence 111122233333 578999999998
No 403
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.86 E-value=0.016 Score=62.06 Aligned_cols=92 Identities=20% Similarity=0.307 Sum_probs=57.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC-CCCHHHHHHHHHHHcCCCC-----CCCCCccHH--
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK-DPRLEKIQEDIGKRIGLVD-----DSWKSKSVE-- 111 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~l~~~l~~~~-----~~~~~~~~~-- 111 (769)
++...++|.|++|+|||+|+.++++...+ .+.+.++++-++. ..+..++.+.+...-.... .........
T Consensus 141 gkGQR~gIfa~~G~GKt~Ll~~~~~~~~~--~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 141 AKGGKTGLFGGAGVGKTVLMMELIFNISK--QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHh--hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 45568899999999999999999988732 2556777766554 4567777777765422110 000111111
Q ss_pred ---HHHHHHHHHh---ccceEEEEEccc
Q 039535 112 ---EKALDIFRSL---REKRIVLLLDDI 133 (769)
Q Consensus 112 ---~~~~~l~~~l---~~~~~llvlDd~ 133 (769)
...-.+.+++ .++++|+++|++
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccc
Confidence 1122344444 378999999999
No 404
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.86 E-value=0.012 Score=54.75 Aligned_cols=27 Identities=30% Similarity=0.559 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....+++|.|+.|+|||||++.++.-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 344689999999999999999988776
No 405
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.85 E-value=0.023 Score=54.97 Aligned_cols=26 Identities=38% Similarity=0.441 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|.|+.|+|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998875
No 406
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.85 E-value=0.012 Score=55.32 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=33.8
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
++++|.+.....+.-+.- +.+.+.++|++|+|||++|+.+..-+
T Consensus 3 ~dI~GQe~aKrAL~iAAa--G~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAA--GGHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CCSSSTHHHHHHHHHHHH--CC--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhcCcHHHHHHHHHHHc--CCCCeEEECCCCCCHHHHHHHHHHhC
Confidence 567999988888776664 34688999999999999999987666
No 407
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.84 E-value=0.033 Score=50.86 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...++|.||+|+|||||++++..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578999999999999999998885
No 408
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.84 E-value=0.01 Score=62.58 Aligned_cols=90 Identities=20% Similarity=0.286 Sum_probs=52.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC-CCCHHHHHHHHHHHcCCCC-----CCCCCccHHH-
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK-DPRLEKIQEDIGKRIGLVD-----DSWKSKSVEE- 112 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~l~~~l~~~~-----~~~~~~~~~~- 112 (769)
.....++|.|+.|+|||||+..++... ..+.++..-++. ..++.++.+.++..-+... ..........
T Consensus 160 ~~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (444)
T PRK08972 160 GKGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRL 234 (444)
T ss_pred cCCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHH
Confidence 345688999999999999999988654 224555555544 4556667666654422211 0001111111
Q ss_pred ----HHHHHHHHh--ccceEEEEEcccc
Q 039535 113 ----KALDIFRSL--REKRIVLLLDDIW 134 (769)
Q Consensus 113 ----~~~~l~~~l--~~~~~llvlDd~~ 134 (769)
..-.+.+++ .++++|+++|++-
T Consensus 235 ~a~~~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 235 KGCETATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcChH
Confidence 111233333 5789999999993
No 409
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.83 E-value=0.035 Score=55.64 Aligned_cols=48 Identities=25% Similarity=0.328 Sum_probs=37.7
Q ss_pred CCccccchHHHHHH---HHHHhhcC--CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 19 TERTLVGLQSQLEQ---VWRCLIEE--SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 19 ~~~~~vgR~~~~~~---l~~~l~~~--~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....|||..+..+. +++++.++ ..+.|.+.||+|.|||+||..+++++
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL 89 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL 89 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHh
Confidence 44679997765544 46666554 34688999999999999999999999
No 410
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=95.83 E-value=0.067 Score=52.61 Aligned_cols=91 Identities=15% Similarity=0.155 Sum_probs=53.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCC----HHHHHHHHHHHcCCCCCC---------------
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPR----LEKIQEDIGKRIGLVDDS--------------- 104 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~----~~~~~~~l~~~l~~~~~~--------------- 104 (769)
+.+|+||.|+|||.|.+.+...- ........|+||.-...-- ......++.+.-....++
T Consensus 89 I~~VYGPTG~GKSqLlRNLis~~-lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t~~P~Fv 167 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLRNLISCQ-LIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGTFRPKFV 167 (369)
T ss_pred EEEEECCCCCCHHHHHHHhhhcC-cccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeccccccccccce
Confidence 56799999999999999887664 4456667788886433222 222223333322111110
Q ss_pred ---------CCCccHHHHHHHHHHHhccceEEEEEccccc
Q 039535 105 ---------WKSKSVEEKALDIFRSLREKRIVLLLDDIWE 135 (769)
Q Consensus 105 ---------~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~ 135 (769)
....+++.--..+.+.-+..++-||+|+..+
T Consensus 168 ~msy~e~t~~~NldI~~p~NiF~~Aa~~GPiaIImDECMe 207 (369)
T PF02456_consen 168 EMSYDEATSPENLDITNPNNIFAQAAKKGPIAIIMDECME 207 (369)
T ss_pred eecHhhhCCccccCCCCchHHHHHHHhcCCEEEEhHHHHH
Confidence 0111222223345556677899999999854
No 411
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=95.82 E-value=0.067 Score=56.40 Aligned_cols=95 Identities=19% Similarity=0.152 Sum_probs=68.8
Q ss_pred ccchHHHHHHHHHHhh---cCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC-------CCHHHHHH
Q 039535 23 LVGLQSQLEQVWRCLI---EESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD-------PRLEKIQE 92 (769)
Q Consensus 23 ~vgR~~~~~~l~~~l~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~-------~~~~~~~~ 92 (769)
-|||+.+++.+.+.|. .++...-+|.|.-|.|||.+++.+.+.. ....-.+..++++.. .....+++
T Consensus 27 ~VGr~~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~~i~~~A---~~~~fvvs~v~ls~e~~lh~~~g~~~~~Yr 103 (416)
T PF10923_consen 27 AVGREREIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFLRLIRERA---LEKGFVVSEVDLSPERPLHGTGGQLEALYR 103 (416)
T ss_pred eechHHHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHHHHHHHHH---HHcCCEEEEEecCCCcccccccccHHHHHH
Confidence 3999999999998886 3666778999999999999999988887 344446777776663 25677999
Q ss_pred HHHHHcCCCCCCCCCccHHHHHHHHHHHh
Q 039535 93 DIGKRIGLVDDSWKSKSVEEKALDIFRSL 121 (769)
Q Consensus 93 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~l 121 (769)
++.+.+...... ........++++...+
T Consensus 104 ~l~~nL~t~~~p-~G~al~~ild~wi~~~ 131 (416)
T PF10923_consen 104 ELMRNLSTKTKP-EGGALRSILDRWIYNL 131 (416)
T ss_pred HHHHhcCCCCCC-CchHHHHHHHHHHHHH
Confidence 999999765422 2223555555544444
No 412
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.80 E-value=0.071 Score=53.76 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....+|+|.|+.|+||||+|+.+...+
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345789999999999999998887666
No 413
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.79 E-value=0.063 Score=54.47 Aligned_cols=53 Identities=19% Similarity=0.130 Sum_probs=37.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKR 97 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 97 (769)
...+++|.|++|+|||+++.+++.... ......++|++... ...++.+.+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 345889999999999999999988862 22245788887655 345555555444
No 414
>PRK06762 hypothetical protein; Provisional
Probab=95.79 E-value=0.0086 Score=55.60 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+|+|+|++|+||||+|+.+++.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999887
No 415
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.79 E-value=0.015 Score=57.21 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
++..+++|.|++|+|||||++.++..+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999988
No 416
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.78 E-value=0.013 Score=62.13 Aligned_cols=89 Identities=18% Similarity=0.297 Sum_probs=51.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEec-CCCCHHHHHHHHHHHcCCCC-----CCCCCccHHH-
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVS-KDPRLEKIQEDIGKRIGLVD-----DSWKSKSVEE- 112 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~l~~~l~~~~-----~~~~~~~~~~- 112 (769)
.+...++|.|++|+|||||+++++... ..+.+++.-++ +..++.++....+..-+... ..........
T Consensus 156 ~~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~ 230 (442)
T PRK08927 156 CRGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRR 230 (442)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHH
Confidence 355688999999999999999988775 12344444444 34556666655544322110 0001111111
Q ss_pred ----HHHHHHHHh--ccceEEEEEccc
Q 039535 113 ----KALDIFRSL--REKRIVLLLDDI 133 (769)
Q Consensus 113 ----~~~~l~~~l--~~~~~llvlDd~ 133 (769)
..-.+.+++ .++++|+++|++
T Consensus 231 ~a~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 231 QAAYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 111233333 578999999999
No 417
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.77 E-value=0.029 Score=57.04 Aligned_cols=96 Identities=16% Similarity=0.160 Sum_probs=56.3
Q ss_pred HHHHHHhhcC---CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCC--
Q 039535 31 EQVWRCLIEE---SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSW-- 105 (769)
Q Consensus 31 ~~l~~~l~~~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~-- 105 (769)
..|-.+|..+ ..+++-|+|++|+||||||.+++.+.++ ....++|++.....+. ..++.++...++.
T Consensus 39 ~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~---~g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv 110 (322)
T PF00154_consen 39 PALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK---QGGICAFIDAEHALDP-----EYAESLGVDLDRLLV 110 (322)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH---TT-EEEEEESSS---H-----HHHHHTT--GGGEEE
T ss_pred cccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhc---ccceeEEecCcccchh-----hHHHhcCccccceEE
Confidence 3444455422 3468899999999999999999888732 3467899987665443 4455555543221
Q ss_pred -CCccHHHHHHHHHHHhcc-ceEEEEEcccc
Q 039535 106 -KSKSVEEKALDIFRSLRE-KRIVLLLDDIW 134 (769)
Q Consensus 106 -~~~~~~~~~~~l~~~l~~-~~~llvlDd~~ 134 (769)
.+...++.+....+.++. ..-++|+|.|.
T Consensus 111 ~~P~~~E~al~~~e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 111 VQPDTGEQALWIAEQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp EE-SSHHHHHHHHHHHHHTTSESEEEEE-CT
T ss_pred ecCCcHHHHHHHHHHHhhcccccEEEEecCc
Confidence 233445555555555543 34488889884
No 418
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.77 E-value=0.0059 Score=52.27 Aligned_cols=29 Identities=34% Similarity=0.425 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhccCCCCE
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKFLESRTNFDF 75 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~ 75 (769)
.|.|+|.+|+|||++|+.++... ...|..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~---~~~f~R 29 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL---GLSFKR 29 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT---T--EEE
T ss_pred CEeeECCCccHHHHHHHHHHHHc---CCceeE
Confidence 37899999999999999999998 444443
No 419
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.76 E-value=0.022 Score=58.03 Aligned_cols=47 Identities=28% Similarity=0.355 Sum_probs=34.6
Q ss_pred CccccchHHHHHH---HHHHhhcCC--ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 20 ERTLVGLQSQLEQ---VWRCLIEES--AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 20 ~~~~vgR~~~~~~---l~~~l~~~~--~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+||.....+. +++++.+++ .+.+.+.||+|.|||+||..+++++
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eL 74 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKEL 74 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHC
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHh
Confidence 4679998766554 355555543 5789999999999999999999998
No 420
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.059 Score=58.63 Aligned_cols=171 Identities=18% Similarity=0.209 Sum_probs=94.3
Q ss_pred cccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHH
Q 039535 22 TLVGLQSQLEQVWRCLIE-------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLE 88 (769)
Q Consensus 22 ~~vgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 88 (769)
.+-|-...+..+.....- ...+-+.++||+|+|||-++++++++. . ...+.++. .
T Consensus 185 ~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~---~---a~~~~i~~------p 252 (693)
T KOG0730|consen 185 DIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEY---G---AFLFLING------P 252 (693)
T ss_pred ccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHh---C---ceeEeccc------H
Confidence 445555555555554320 234568899999999999999999997 1 11111111 1
Q ss_pred HHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccc-eEEEEEccccccc-------c-----cccccccCCCCC-CCCc
Q 039535 89 KIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLREK-RIVLLLDDIWERL-------D-----LTKVGVPLPGPK-NTTS 154 (769)
Q Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~llvlDd~~~~~-------~-----~~~~~~~l~~~~-~~~~ 154 (769)
+ +...+ .......+.+.+.+..+.+ +.++.+|+++... . ..++...+.+.. ....
T Consensus 253 e----li~k~-------~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~v 321 (693)
T KOG0730|consen 253 E----LISKF-------PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKV 321 (693)
T ss_pred H----HHHhc-------ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcE
Confidence 1 12221 1222334444455555666 8999999996431 1 111222222111 2333
Q ss_pred EEEEEcCchhh----hcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcc
Q 039535 155 KVVFTTRFFDV----CGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLP 219 (769)
Q Consensus 155 ~iiittr~~~~----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 219 (769)
.||-+|+.+.. ...-..++.+.++-.+..+-.++++..........+ .....++..+.|.-
T Consensus 322 ivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~----~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 322 IVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSD----VDLEDIAVSTHGYV 386 (693)
T ss_pred EEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcch----hhHHHHHHHccchh
Confidence 44455555432 121123567888888988888988888766553322 33456777777765
No 421
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.76 E-value=0.033 Score=57.28 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 039535 45 IGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 45 v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+++.|++|+||||+++.++..+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999888
No 422
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.74 E-value=0.012 Score=65.39 Aligned_cols=46 Identities=20% Similarity=0.298 Sum_probs=39.6
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
++++|++..++.+...+.......|.|+|++|+|||++|+.+.+..
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999988765556678899999999999999998764
No 423
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.74 E-value=0.031 Score=50.62 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
++.|.|.+|+||||+|+.+...+
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999987
No 424
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.72 E-value=0.035 Score=60.17 Aligned_cols=51 Identities=25% Similarity=0.336 Sum_probs=35.2
Q ss_pred HHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC
Q 039535 30 LEQVWRCLIE--ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK 83 (769)
Q Consensus 30 ~~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~ 83 (769)
+..+-+.|.. ....++.|.|++|+|||||+.+++....+ ....++|++...
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~---~g~kvlYvs~EE 132 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAK---NQMKVLYVSGEE 132 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEECcC
Confidence 4444444432 23568899999999999999999888732 223577876543
No 425
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.71 E-value=0.01 Score=57.51 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+..+|+|.|++|+|||||++.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999887
No 426
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.69 E-value=0.048 Score=57.30 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=35.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCC-CHHHHHHHHHHHcCC
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDP-RLEKIQEDIGKRIGL 100 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~l~~~l~~ 100 (769)
..+++++|++|+||||++.+++..+.. . ....+..++..... .....++..+..++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~-~-~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgv 280 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFL-H-MGKSVSLYTTDNYRIAAIEQLKRYADTMGM 280 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-h-cCCeEEEecccchhhhHHHHHHHHHHhcCC
Confidence 357889999999999999999976511 1 22345555544422 233444455555554
No 427
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.68 E-value=0.05 Score=61.96 Aligned_cols=96 Identities=18% Similarity=0.164 Sum_probs=60.7
Q ss_pred HHHHHHhh-c--CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCC---
Q 039535 31 EQVWRCLI-E--ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDS--- 104 (769)
Q Consensus 31 ~~l~~~l~-~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~--- 104 (769)
..|-.+|. . ...+++-|+|++|+|||+|+.+++...+ .....++|++.....+. ..+++++....+
T Consensus 46 ~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~---~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv 117 (790)
T PRK09519 46 IALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ---AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLV 117 (790)
T ss_pred HHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchhH-----HHHHHcCCChhHeEE
Confidence 44444554 2 2456888999999999999998877763 23356789887666553 356666654321
Q ss_pred CCCccHHHHHHHHHHHhc-cceEEEEEcccc
Q 039535 105 WKSKSVEEKALDIFRSLR-EKRIVLLLDDIW 134 (769)
Q Consensus 105 ~~~~~~~~~~~~l~~~l~-~~~~llvlDd~~ 134 (769)
..+...+.....+....+ +..-++|+|.+.
T Consensus 118 ~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 118 SQPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred ecCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 122334444444445443 356689999984
No 428
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.68 E-value=0.018 Score=61.11 Aligned_cols=90 Identities=22% Similarity=0.276 Sum_probs=50.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEec-CCCCHHHHHHHHHHHcCCCC-----CCCCCccHHHH
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVS-KDPRLEKIQEDIGKRIGLVD-----DSWKSKSVEEK 113 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~l~~~l~~~~-----~~~~~~~~~~~ 113 (769)
.....++|.|++|+|||||++.++... ..+..++.-++ +...+.+++.+....-.... ...........
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~ 227 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV 227 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHH
Confidence 455688999999999999999888765 22333443333 34556566665533111000 00011111111
Q ss_pred -----HHHHHHHh--ccceEEEEEcccc
Q 039535 114 -----ALDIFRSL--REKRIVLLLDDIW 134 (769)
Q Consensus 114 -----~~~l~~~l--~~~~~llvlDd~~ 134 (769)
.-.+.+++ .++++|+++||+-
T Consensus 228 ~a~~~a~tiAEyfrd~G~~VLl~~Dslt 255 (433)
T PRK07594 228 RALFVATTIAEFFRDNGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCHH
Confidence 11233333 5789999999993
No 429
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.67 E-value=0.018 Score=58.47 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=41.4
Q ss_pred ccccchHHHHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQSQLEQVWRCLIE------ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~------~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+|+|-++.++++++.|.. .+.+++.+.||.|.||||||+.+.+-+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4799999999999999874 356789999999999999999999988
No 430
>PRK03839 putative kinase; Provisional
Probab=95.67 E-value=0.0093 Score=56.24 Aligned_cols=23 Identities=43% Similarity=0.622 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.|+|.|++|+||||+++.+++++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999997
No 431
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.67 E-value=0.014 Score=54.96 Aligned_cols=26 Identities=38% Similarity=0.498 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|.|+.|+|||||++.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998765
No 432
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.66 E-value=0.076 Score=57.33 Aligned_cols=88 Identities=25% Similarity=0.314 Sum_probs=50.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC-CCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHH
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD-PRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRS 120 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 120 (769)
.++++++|+.|+||||++.+++..+.. ......+..+..... ....+-++.+.+.++..... .....+.... ...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~-~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~--~~~~~Dl~~a-L~~ 331 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVM-RHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA--VKDAADLRLA-LSE 331 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHH-hcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec--cCCchhHHHH-HHh
Confidence 468999999999999999999987722 222224555554442 34455566666666643211 1111222222 233
Q ss_pred hccceEEEEEcccc
Q 039535 121 LREKRIVLLLDDIW 134 (769)
Q Consensus 121 l~~~~~llvlDd~~ 134 (769)
+++. -.+++|...
T Consensus 332 L~d~-d~VLIDTaG 344 (484)
T PRK06995 332 LRNK-HIVLIDTIG 344 (484)
T ss_pred ccCC-CeEEeCCCC
Confidence 4444 366777763
No 433
>PRK06217 hypothetical protein; Validated
Probab=95.65 E-value=0.018 Score=54.40 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.|+|.|.+|+||||+|+++++.+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999987
No 434
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.65 E-value=0.068 Score=56.73 Aligned_cols=88 Identities=24% Similarity=0.315 Sum_probs=48.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC-CCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD-PRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFR 119 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 119 (769)
...+++++|+.|+||||++..++.+... ......+..+..... ....+-+..+.+.++.... ...+..+.. ....
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~-~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~--~v~~~~dl~-~al~ 265 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVI-RHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR--SIKDIADLQ-LMLH 265 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee--cCCCHHHHH-HHHH
Confidence 3468999999999999999998876521 222233444443332 2344445566666665432 222333332 2233
Q ss_pred HhccceEEEEEccc
Q 039535 120 SLREKRIVLLLDDI 133 (769)
Q Consensus 120 ~l~~~~~llvlDd~ 133 (769)
.+.+.. ++++|-.
T Consensus 266 ~l~~~d-~VLIDTa 278 (420)
T PRK14721 266 ELRGKH-MVLIDTV 278 (420)
T ss_pred HhcCCC-EEEecCC
Confidence 344443 4566665
No 435
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.63 E-value=0.036 Score=61.05 Aligned_cols=65 Identities=17% Similarity=0.097 Sum_probs=42.1
Q ss_pred HHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcC
Q 039535 29 QLEQVWRCLIE--ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIG 99 (769)
Q Consensus 29 ~~~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~ 99 (769)
.+..+-+.|.. ....++.|.|++|+|||+|+.+++.... .+...++++.... +..++.+.+ +.++
T Consensus 248 Gi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eE--s~~~i~~~~-~~lg 314 (484)
T TIGR02655 248 GVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEE--SRAQLLRNA-YSWG 314 (484)
T ss_pred ChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeC--CHHHHHHHH-HHcC
Confidence 34455555543 2456899999999999999999999872 3334566665443 445555543 3444
No 436
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.62 E-value=0.031 Score=52.48 Aligned_cols=117 Identities=21% Similarity=0.159 Sum_probs=60.7
Q ss_pred HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCC--EEEEEEecCCCCHHH-----HHHHHHHHcCCCCCCC
Q 039535 33 VWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFD--FVIWVVVSKDPRLEK-----IQEDIGKRIGLVDDSW 105 (769)
Q Consensus 33 l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~--~~~w~~~~~~~~~~~-----~~~~l~~~l~~~~~~~ 105 (769)
|...+.+.+.....|.||||+||||+.+.+++-.......|. .+.-++-+. .... =+..+..++....
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers--EIag~~~gvpq~~~g~R~dVld--- 202 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS--EIAGCLNGVPQHGRGRRMDVLD--- 202 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc--hhhccccCCchhhhhhhhhhcc---
Confidence 444444455556789999999999999999988743222332 333333221 1100 0111111111111
Q ss_pred CCccHH-HHHHHHHHHhccceEEEEEcccccccccccccccCCCCCCCCcEEEEEcCc
Q 039535 106 KSKSVE-EKALDIFRSLREKRIVLLLDDIWERLDLTKVGVPLPGPKNTTSKVVFTTRF 162 (769)
Q Consensus 106 ~~~~~~-~~~~~l~~~l~~~~~llvlDd~~~~~~~~~~~~~l~~~~~~~~~iiittr~ 162 (769)
+.... -+...+. .--+=++|.|++....+..++...+. .|.+++.|..-
T Consensus 203 -~cpk~~gmmmaIr---sm~PEViIvDEIGt~~d~~A~~ta~~----~GVkli~TaHG 252 (308)
T COG3854 203 -PCPKAEGMMMAIR---SMSPEVIIVDEIGTEEDALAILTALH----AGVKLITTAHG 252 (308)
T ss_pred -cchHHHHHHHHHH---hcCCcEEEEeccccHHHHHHHHHHHh----cCcEEEEeecc
Confidence 11111 1111222 22355899999976666555554443 57888887764
No 437
>PRK05439 pantothenate kinase; Provisional
Probab=95.62 E-value=0.13 Score=52.30 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+..-+|+|.|++|+||||+|+.+...+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999998877
No 438
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.61 E-value=0.018 Score=54.36 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....++|.|+.|+|||||++.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999998876
No 439
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.60 E-value=0.32 Score=48.98 Aligned_cols=139 Identities=9% Similarity=0.092 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhhhcc------------------CCCCEEEEEEecCCCC
Q 039535 26 LQSQLEQVWRCLIEESA-GIIGLYGMGGVGKTTLLIHINNKFLESR------------------TNFDFVIWVVVSKDPR 86 (769)
Q Consensus 26 R~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~------------------~~~~~~~w~~~~~~~~ 86 (769)
....++.+...+.+++. ....++| |.||+++|..++..+--.. +..+.+.|+.-.
T Consensus 7 q~~~~~~L~~~~~~~rl~hAyLf~G--~~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~---- 80 (290)
T PRK07276 7 QPKVFQRFQTILEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQ---- 80 (290)
T ss_pred HHHHHHHHHHHHHcCCcceeeeeeC--CccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCC----
Confidence 34556666777766654 4667888 4899999999988762100 011112222110
Q ss_pred HHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-----ccceEEEEEccccccc--ccccccccCCCCCCCCcEEEEE
Q 039535 87 LEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-----REKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVFT 159 (769)
Q Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iiit 159 (769)
.....+++. +.+.+.+ .+++-++|+|+++... ..-.+...+. ....++.+|++
T Consensus 81 ------------------~~~I~idqI-R~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLE-EPp~~t~~iL~ 140 (290)
T PRK07276 81 ------------------GQVIKTDTI-RELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIE-EPQSEIYIFLL 140 (290)
T ss_pred ------------------CCcCCHHHH-HHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhc-CCCCCeEEEEE
Confidence 011122222 2222222 3456689999997542 2222322233 22344566666
Q ss_pred cCch-hhhccc-CCCceEEeecCCHHHHHHHHHH
Q 039535 160 TRFF-DVCGSM-EAHRTFEVACLSEKDAWELFQE 191 (769)
Q Consensus 160 tr~~-~~~~~~-~~~~~~~l~~l~~~e~~~l~~~ 191 (769)
|.+. .+...+ ...+.+.+.+ +.++..+++.+
T Consensus 141 t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 141 TNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred ECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 6543 444433 3456788866 67777777754
No 440
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.60 E-value=0.021 Score=51.42 Aligned_cols=26 Identities=42% Similarity=0.631 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|.|+.|.|||||++.++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 44689999999999999999998876
No 441
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.60 E-value=0.011 Score=56.26 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+.++++|.|++|+||||+|+.+++++
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999876
No 442
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.59 E-value=0.22 Score=49.98 Aligned_cols=38 Identities=11% Similarity=0.057 Sum_probs=29.9
Q ss_pred HHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 29 QLEQVWRCLIEES-AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 29 ~~~~l~~~l~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.-+++...+.+++ .....++|+.|+||+++|..+++.+
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~l 43 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLI 43 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHH
Confidence 3456666666655 4567799999999999999998887
No 443
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.58 E-value=0.018 Score=51.72 Aligned_cols=27 Identities=26% Similarity=0.532 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+..++.++|.+|+||||+|.++.+.+
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999999
No 444
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=95.54 E-value=0.025 Score=60.60 Aligned_cols=90 Identities=23% Similarity=0.256 Sum_probs=48.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCC-----CCCCCccHHH--
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVD-----DSWKSKSVEE-- 112 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~-----~~~~~~~~~~-- 112 (769)
.+...++|.|++|+|||||++.++... .....++.....+..+..++.......-+... ..........
T Consensus 161 ~~Gq~~~I~G~sG~GKStLl~~I~~~~----~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~ 236 (440)
T TIGR01026 161 GKGQRIGIFAGSGVGKSTLLGMIARNT----EADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLK 236 (440)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHH
Confidence 345678999999999999999888775 12222222222334455555554443211100 0001111111
Q ss_pred ---HHHHHHHHh--ccceEEEEEccc
Q 039535 113 ---KALDIFRSL--REKRIVLLLDDI 133 (769)
Q Consensus 113 ---~~~~l~~~l--~~~~~llvlDd~ 133 (769)
..-.+.+++ .++++|+++|++
T Consensus 237 ~~~~a~t~AE~frd~G~~Vll~~Dsl 262 (440)
T TIGR01026 237 GAYVATAIAEYFRDQGKDVLLLMDSV 262 (440)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeCh
Confidence 111233333 578999999999
No 445
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.54 E-value=0.012 Score=56.79 Aligned_cols=26 Identities=38% Similarity=0.503 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+|+|.|++|+|||||++.++..+
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999887
No 446
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=95.54 E-value=0.032 Score=59.22 Aligned_cols=27 Identities=30% Similarity=0.456 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+...++|.|++|+|||||+..++...
T Consensus 155 ~~Gq~~~i~G~sG~GKStLl~~i~~~~ 181 (434)
T PRK08472 155 GKGQKLGIFAGSGVGKSTLMGMIVKGC 181 (434)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 445688999999999999999998765
No 447
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.047 Score=55.60 Aligned_cols=127 Identities=17% Similarity=0.194 Sum_probs=68.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL 121 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l 121 (769)
.+.|..|||||.|||-.|+.++.+- ..+..+ ++.+ ++.. -...--..+-.++++-
T Consensus 384 fRNilfyGPPGTGKTm~ArelAr~S-----GlDYA~-mTGG---DVAP----------------lG~qaVTkiH~lFDWa 438 (630)
T KOG0742|consen 384 FRNILFYGPPGTGKTMFARELARHS-----GLDYAI-MTGG---DVAP----------------LGAQAVTKIHKLFDWA 438 (630)
T ss_pred hhheeeeCCCCCCchHHHHHHHhhc-----CCceeh-hcCC---Cccc----------------cchHHHHHHHHHHHHH
Confidence 4678999999999999999998874 222211 1111 1100 1111112234455555
Q ss_pred --ccceEEEEEcccccc----------cc----cccccccCCCCCCCC-cEEEEEcCchhhhccc--CCCceEEeecCCH
Q 039535 122 --REKRIVLLLDDIWER----------LD----LTKVGVPLPGPKNTT-SKVVFTTRFFDVCGSM--EAHRTFEVACLSE 182 (769)
Q Consensus 122 --~~~~~llvlDd~~~~----------~~----~~~~~~~l~~~~~~~-~~iiittr~~~~~~~~--~~~~~~~l~~l~~ 182 (769)
+.+-.|+++|+.|.- ++ +-.+...-. ..... ..++.|.|+.++-... ..++.++++.-..
T Consensus 439 kkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTG-dqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGe 517 (630)
T KOG0742|consen 439 KKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-DQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGE 517 (630)
T ss_pred hhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhc-ccccceEEEeccCCccchhHHHHhhhhheeecCCCCh
Confidence 345688999998621 11 112211111 22222 2334455655543322 3456788888888
Q ss_pred HHHHHHHHHHhc
Q 039535 183 KDAWELFQEKVG 194 (769)
Q Consensus 183 ~e~~~l~~~~~~ 194 (769)
+|-..++...+.
T Consensus 518 EERfkll~lYln 529 (630)
T KOG0742|consen 518 EERFKLLNLYLN 529 (630)
T ss_pred HHHHHHHHHHHH
Confidence 888888776653
No 448
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.53 E-value=0.0093 Score=56.44 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+|+|+|++|+||||+|+.+++++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999987
No 449
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.52 E-value=0.012 Score=54.29 Aligned_cols=23 Identities=43% Similarity=0.521 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhh
Q 039535 45 IGLYGMGGVGKTTLLIHINNKFL 67 (769)
Q Consensus 45 v~I~G~~GiGKTtLa~~~~~~~~ 67 (769)
++|+|++|+||||+++.+++.++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 78999999999999999999983
No 450
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.52 E-value=0.018 Score=54.38 Aligned_cols=37 Identities=30% Similarity=0.349 Sum_probs=30.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEe
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVV 81 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~ 81 (769)
.+.++|+||+|+|||||+.+++.+. ...|..+++.+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeecc
Confidence 4689999999999999999999987 566665555543
No 451
>PHA02244 ATPase-like protein
Probab=95.52 E-value=0.017 Score=59.44 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=33.2
Q ss_pred CccccchHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 20 ERTLVGLQSQLEQVWRCLIE--ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+..|+|+...+......+.. .....|.|+|++|+|||++|+++++..
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 45577866666544433322 233457799999999999999999986
No 452
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.51 E-value=0.015 Score=55.22 Aligned_cols=44 Identities=25% Similarity=0.256 Sum_probs=31.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHH
Q 039535 45 IGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQED 93 (769)
Q Consensus 45 v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 93 (769)
+.|.|++|+|||+++.+++.... .....++|++... +...+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCC--CHHHHHHH
Confidence 67999999999999999988872 2335577876543 34444443
No 453
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.48 E-value=0.1 Score=59.32 Aligned_cols=88 Identities=20% Similarity=0.284 Sum_probs=53.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC-CCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHH
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD-PRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRS 120 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 120 (769)
.+++.++|+.|+||||++..++..+. .......+..+..... ....+-++...+.++.... ...+.+++. ...+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~-~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~--~~~~~~~l~-~al~~ 260 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV-AREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH--AVKDAADLR-FALAA 260 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH-HHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc--ccCCHHHHH-HHHHH
Confidence 46899999999999999999998772 1222235566655443 2345566667777765432 223444443 33344
Q ss_pred hccceEEEEEcccc
Q 039535 121 LREKRIVLLLDDIW 134 (769)
Q Consensus 121 l~~~~~llvlDd~~ 134 (769)
+++.. +|++|-..
T Consensus 261 ~~~~D-~VLIDTAG 273 (767)
T PRK14723 261 LGDKH-LVLIDTVG 273 (767)
T ss_pred hcCCC-EEEEeCCC
Confidence 55444 66777763
No 454
>PRK14529 adenylate kinase; Provisional
Probab=95.48 E-value=0.031 Score=53.92 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 039535 45 IGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 45 v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
++|.|++|+||||+++.+++++
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~ 24 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKY 24 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7789999999999999999988
No 455
>PRK04040 adenylate kinase; Provisional
Probab=95.48 E-value=0.013 Score=55.33 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+|+|+|++|+||||+++.+++++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999998
No 456
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.47 E-value=0.014 Score=68.68 Aligned_cols=193 Identities=16% Similarity=0.134 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhcc-CCCCEEEEEEecC-----CCCHH-HHHHHHHHHcCCCCCCCCCccHHHHHH
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKFLESR-TNFDFVIWVVVSK-----DPRLE-KIQEDIGKRIGLVDDSWKSKSVEEKAL 115 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~w~~~~~-----~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~ 115 (769)
..+.|+|.+|+||||+..+++-...... ..-+..+++-+.. ..... .+..-+...+.... .......
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~------~~~~~~~ 296 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQG------IAKQLIE 296 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccC------CcchhhH
Confidence 3788999999999999999988873322 1223444443331 11111 33333333333221 1222233
Q ss_pred HHHHHhccceEEEEEccccccc---------ccccccccCCCCCCCCcEEEEEcCchhhhcccCCCceEEeecCCHHHHH
Q 039535 116 DIFRSLREKRIVLLLDDIWERL---------DLTKVGVPLPGPKNTTSKVVFTTRFFDVCGSMEAHRTFEVACLSEKDAW 186 (769)
Q Consensus 116 ~l~~~l~~~~~llvlDd~~~~~---------~~~~~~~~l~~~~~~~~~iiittr~~~~~~~~~~~~~~~l~~l~~~e~~ 186 (769)
...+.+...++++++|++|+.. .+..+...++ .+.+|+|+|..............++..+.++...
T Consensus 297 ~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~-----~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~ 371 (824)
T COG5635 297 AHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEYP-----DAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQIN 371 (824)
T ss_pred HHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhcc-----CCeEEEEeccchhhhhhhhhhhccchhhhHHHHH
Confidence 3367778899999999997531 2333333333 6789999997655444444556777777777776
Q ss_pred HHHHHHhc-----cc-cCCCch---hHHHH---HHHHHHHhCCcchHHHHHHHHhcCC-----CCHHHHHHHHHHHh
Q 039535 187 ELFQEKVG-----EE-TLKSDH---DIAEL---AQTVAKKCGGLPLALVTIGRAMASK-----KTAEEWRHAIEELG 246 (769)
Q Consensus 187 ~l~~~~~~-----~~-~~~~~~---~~~~~---~~~i~~~~~G~Plai~~~~~~l~~~-----~~~~~~~~~l~~l~ 246 (769)
+++..... .. ...... ....+ ...-.+..+..|+.+.+.+...... ...+.++...+.+-
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~ 448 (824)
T COG5635 372 QFILYQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALL 448 (824)
T ss_pred HHHHHHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHH
Confidence 66552221 00 000111 11111 1122233478899888887555421 23455555554443
No 457
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.46 E-value=0.01 Score=57.43 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNK 65 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~ 65 (769)
.+.++|+|+-|.||||+.+.++..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 378999999999999999998743
No 458
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.44 E-value=0.022 Score=56.93 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKFL 67 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~~ 67 (769)
+.|+|.|.||+||||+|+.+...+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 4789999999999999999999983
No 459
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.44 E-value=0.018 Score=52.84 Aligned_cols=119 Identities=23% Similarity=0.226 Sum_probs=58.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRS 120 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 120 (769)
...+++|+|+.|.|||||++.++... ....+.++++....... ........+..... -+.. +...-.+...
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~q--lS~G-~~~r~~l~~~ 94 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKL--PLEELRRRIGYVPQ--LSGG-QRQRVALARA 94 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccC--CHHHHHhceEEEee--CCHH-HHHHHHHHHH
Confidence 34689999999999999999998876 22344444432211110 00111111211100 1111 1222234455
Q ss_pred hccceEEEEEcccccc---cccccccccCCCCCCCCcEEEEEcCchhhhcc
Q 039535 121 LREKRIVLLLDDIWER---LDLTKVGVPLPGPKNTTSKVVFTTRFFDVCGS 168 (769)
Q Consensus 121 l~~~~~llvlDd~~~~---~~~~~~~~~l~~~~~~~~~iiittr~~~~~~~ 168 (769)
+...+-++++|+.... .....+...+......+..++++|........
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 5556778999998432 11222222121011124567778776655443
No 460
>PHA02774 E1; Provisional
Probab=95.43 E-value=0.03 Score=60.80 Aligned_cols=49 Identities=16% Similarity=0.187 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEe
Q 039535 28 SQLEQVWRCLIE-ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVV 81 (769)
Q Consensus 28 ~~~~~l~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~ 81 (769)
.-+..+..++.. .+...++|+||+|+|||.+|..+++-+ ....+.|++.
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L-----~G~vi~fvN~ 468 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFL-----KGKVISFVNS 468 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEEEC
Confidence 344555555543 234579999999999999999999997 2445677764
No 461
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.42 E-value=0.034 Score=54.98 Aligned_cols=90 Identities=12% Similarity=0.130 Sum_probs=49.6
Q ss_pred CCceEEEEEcCCCCcHHHHH-HHHHhhhhhccCCCCEE-EEEEecC-CCCHHHHHHHHHHHcCCCC-----CCCCCccHH
Q 039535 40 ESAGIIGLYGMGGVGKTTLL-IHINNKFLESRTNFDFV-IWVVVSK-DPRLEKIQEDIGKRIGLVD-----DSWKSKSVE 111 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa-~~~~~~~~~~~~~~~~~-~w~~~~~-~~~~~~~~~~l~~~l~~~~-----~~~~~~~~~ 111 (769)
.+.+.+.|.|++|+|||+|| ..+++.. ..+.+ +++-+.. ..+..++.+.+...-.... .........
T Consensus 67 grGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~ 141 (274)
T cd01132 67 GRGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPL 141 (274)
T ss_pred ccCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhH
Confidence 34567889999999999996 5555442 22333 5555544 4566777777664322110 000111111
Q ss_pred H-----HHHHHHHHh--ccceEEEEEcccc
Q 039535 112 E-----KALDIFRSL--REKRIVLLLDDIW 134 (769)
Q Consensus 112 ~-----~~~~l~~~l--~~~~~llvlDd~~ 134 (769)
. ..-.+.+++ .++.+|+++||+-
T Consensus 142 r~~a~~~a~aiAE~fr~~G~~Vlvl~DslT 171 (274)
T cd01132 142 QYLAPYTGCAMGEYFMDNGKHALIIYDDLS 171 (274)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEcChH
Confidence 1 111222222 5789999999994
No 462
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.41 E-value=0.037 Score=58.83 Aligned_cols=93 Identities=18% Similarity=0.360 Sum_probs=57.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC-CCCHHHHHHHHHHHcCCCC-----CCCCCccHHH-
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK-DPRLEKIQEDIGKRIGLVD-----DSWKSKSVEE- 112 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~l~~~l~~~~-----~~~~~~~~~~- 112 (769)
++...++|.|++|+|||+|+.+++.... .++...++++-++. ..++.++++.+...-.... ..........
T Consensus 141 g~GQr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~ 218 (461)
T TIGR01039 141 AKGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARM 218 (461)
T ss_pred ccCCEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 4556889999999999999999988762 22334666666654 4667777777754322110 0001111111
Q ss_pred ----HHHHHHHHh---ccceEEEEEcccc
Q 039535 113 ----KALDIFRSL---REKRIVLLLDDIW 134 (769)
Q Consensus 113 ----~~~~l~~~l---~~~~~llvlDd~~ 134 (769)
..-.+.+++ +++++|+++|++-
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLll~DslT 247 (461)
T TIGR01039 219 RVALTGLTMAEYFRDEQGQDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCeeEEEecchh
Confidence 122344555 4679999999993
No 463
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.41 E-value=0.024 Score=56.07 Aligned_cols=36 Identities=39% Similarity=0.422 Sum_probs=23.8
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 29 QLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 29 ~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..+.+..++. ...+.+|+||+|.|||+++..++..+
T Consensus 6 Q~~Ai~~~~~--~~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALS--SNGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCT--SSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCCEEEECCCCCChHHHHHHHHHHh
Confidence 3444444442 22368999999999998887777776
No 464
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.40 E-value=0.064 Score=54.88 Aligned_cols=89 Identities=21% Similarity=0.287 Sum_probs=50.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEe-cCCCCHHHHHHHHHHHcCCCC-----CCCCCccHH--
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVV-SKDPRLEKIQEDIGKRIGLVD-----DSWKSKSVE-- 111 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~l~~~l~~~~-----~~~~~~~~~-- 111 (769)
.....++|.|++|+|||||++.++... . .+..+..-+ ....+..++..+....-+... .........
T Consensus 67 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~---~--~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~ 141 (326)
T cd01136 67 GKGQRLGIFAGSGVGKSTLLGMIARGT---T--ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRV 141 (326)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCC---C--CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHH
Confidence 344678999999999999999888775 1 222233333 344566666666655432210 000111111
Q ss_pred ---HHHHHHHHHh--ccceEEEEEccc
Q 039535 112 ---EKALDIFRSL--REKRIVLLLDDI 133 (769)
Q Consensus 112 ---~~~~~l~~~l--~~~~~llvlDd~ 133 (769)
...-.+.+++ .++.+|+++|++
T Consensus 142 ~~~~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 142 KAAYTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEeccc
Confidence 1111223333 578999999998
No 465
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.39 E-value=0.026 Score=59.88 Aligned_cols=91 Identities=22% Similarity=0.233 Sum_probs=52.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCC------CCCCCcc----
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVD------DSWKSKS---- 109 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~------~~~~~~~---- 109 (769)
+....++|.|++|+|||+|+..++... . ....++........+..++.+..+..-+... ....+..
T Consensus 154 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~---~-~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~r 229 (432)
T PRK06793 154 GIGQKIGIFAGSGVGKSTLLGMIAKNA---K-ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLR 229 (432)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC---C-CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHH
Confidence 345688999999999999999998876 1 1223444333344667777666555433211 0001111
Q ss_pred HHHHHHHHHHHh--ccceEEEEEcccc
Q 039535 110 VEEKALDIFRSL--REKRIVLLLDDIW 134 (769)
Q Consensus 110 ~~~~~~~l~~~l--~~~~~llvlDd~~ 134 (769)
.......+.+++ .++++|+++|++-
T Consensus 230 a~~~a~~iAEyfr~~G~~VLlilDslT 256 (432)
T PRK06793 230 AAKLATSIAEYFRDQGNNVLLMMDSVT 256 (432)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEecchH
Confidence 111122233333 5789999999993
No 466
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.39 E-value=0.023 Score=58.67 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=38.6
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..+||.+..+..+.-.+.+.+.+.|.|.|++|+||||+++.++.-+
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 4579999999888766665556678899999999999999998776
No 467
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.38 E-value=0.026 Score=59.91 Aligned_cols=91 Identities=21% Similarity=0.235 Sum_probs=50.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCC-----CCCCCccHH---
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVD-----DSWKSKSVE--- 111 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~-----~~~~~~~~~--- 111 (769)
.....++|.|++|+|||||+..++... .. -..++.....+..+..++....+..-+... .........
T Consensus 135 ~~Gqri~I~G~sG~GKTtLl~~i~~~~---~~-~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~ 210 (413)
T TIGR03497 135 GKGQRVGIFAGSGVGKSTLLGMIARNA---KA-DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLK 210 (413)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CC-CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHH
Confidence 455688999999999999999888765 11 123333333334455556555444322110 000111111
Q ss_pred --HHHHHHHHHh--ccceEEEEEcccc
Q 039535 112 --EKALDIFRSL--REKRIVLLLDDIW 134 (769)
Q Consensus 112 --~~~~~l~~~l--~~~~~llvlDd~~ 134 (769)
...-.+.+++ .++++|+++|++-
T Consensus 211 ~~~~a~tiAEyfr~~G~~Vll~~Dslt 237 (413)
T TIGR03497 211 AAFTATAIAEYFRDQGKDVLLMMDSVT 237 (413)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcCcH
Confidence 1112233333 5789999999993
No 468
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.37 E-value=0.089 Score=48.72 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....++|.|+.|+|||||++.++...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999998876
No 469
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.37 E-value=0.066 Score=54.61 Aligned_cols=52 Identities=23% Similarity=0.338 Sum_probs=38.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC-CCCHHHHHHHHHH
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK-DPRLEKIQEDIGK 96 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~l~~ 96 (769)
.+.+.++|.|+.|+|||+|++++++.. +.+.++++-++. ..++.++++++-+
T Consensus 155 ~kGqr~~I~G~~G~GKT~L~~~Iak~~-----~~dvvVyv~iGERg~Ev~e~l~ef~~ 207 (369)
T cd01134 155 VKGGTAAIPGPFGCGKTVIQQSLSKYS-----NSDIVIYVGCGERGNEMTEVLEEFPE 207 (369)
T ss_pred cCCCEEEEECCCCCChHHHHHHHHhCC-----CCCEEEEEEeCCChHHHHHHHHHHHh
Confidence 445688999999999999999988874 234677777655 4566777776654
No 470
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.36 E-value=0.038 Score=53.81 Aligned_cols=124 Identities=21% Similarity=0.209 Sum_probs=68.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccC-------------CCCEEEEEEec----C--CCCH--------------
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRT-------------NFDFVIWVVVS----K--DPRL-------------- 87 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-------------~~~~~~w~~~~----~--~~~~-------------- 87 (769)
....++|+||-|.|||||++.+.--++...+ ....+.|++=. . +.++
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 3468999999999999999999875521111 01245555310 0 1111
Q ss_pred --------HHHHHHHHHHcCCCCCC---CCCccHHHH-HHHHHHHhccceEEEEEcccccc------cccccccccCCCC
Q 039535 88 --------EKIQEDIGKRIGLVDDS---WKSKSVEEK-ALDIFRSLREKRIVLLLDDIWER------LDLTKVGVPLPGP 149 (769)
Q Consensus 88 --------~~~~~~l~~~l~~~~~~---~~~~~~~~~-~~~l~~~l~~~~~llvlDd~~~~------~~~~~~~~~l~~~ 149 (769)
.+...+.++++++..-. ....+=.+. .-.+.+.+.+++=+++||+--.. ...-.+...+.
T Consensus 109 ~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~-- 186 (254)
T COG1121 109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR-- 186 (254)
T ss_pred cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--
Confidence 24444455555443211 111111222 22455667888889999997321 22333344443
Q ss_pred CCCCcEEEEEcCchhhhc
Q 039535 150 KNTTSKVVFTTRFFDVCG 167 (769)
Q Consensus 150 ~~~~~~iiittr~~~~~~ 167 (769)
..|+.|+++|.+-....
T Consensus 187 -~eg~tIl~vtHDL~~v~ 203 (254)
T COG1121 187 -QEGKTVLMVTHDLGLVM 203 (254)
T ss_pred -HCCCEEEEEeCCcHHhH
Confidence 33888999999865533
No 471
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.36 E-value=0.021 Score=55.54 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.|+|+|++|+||||+|+.++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999887
No 472
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.35 E-value=0.018 Score=55.75 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 039535 45 IGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 45 v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
|+|.|++|+||||+|+.+++++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999999886
No 473
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.34 E-value=0.024 Score=53.11 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|+|++|+||||+|+.++..+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999998
No 474
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.34 E-value=0.02 Score=59.10 Aligned_cols=47 Identities=19% Similarity=0.262 Sum_probs=40.5
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhh
Q 039535 21 RTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFL 67 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 67 (769)
+.+||.++....|...+-+.+.+-|.|.|+.|+||||+|+.+++-+.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 56899999999888887766667788999999999999999977763
No 475
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.33 E-value=0.034 Score=59.35 Aligned_cols=93 Identities=19% Similarity=0.343 Sum_probs=56.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC-CCCHHHHHHHHHHHcCCCC-----CCCCCccHH--
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK-DPRLEKIQEDIGKRIGLVD-----DSWKSKSVE-- 111 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~l~~~l~~~~-----~~~~~~~~~-- 111 (769)
++...++|.|.+|+|||+|+.+++..... ++...++++-++. ..++.++.+.+...-.... .........
T Consensus 142 gkGQR~gIfa~~GvGKt~Ll~~i~~~~~~--~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 142 AKGGKIGLFGGAGVGKTVLIQELINNIAK--EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHh--cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 45568899999999999999998887621 2234566666644 4567777777775422210 000111111
Q ss_pred ---HHHHHHHHHh---ccceEEEEEcccc
Q 039535 112 ---EKALDIFRSL---REKRIVLLLDDIW 134 (769)
Q Consensus 112 ---~~~~~l~~~l---~~~~~llvlDd~~ 134 (769)
...-.+.+++ .++++|+++|++-
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecchH
Confidence 1122344444 6689999999993
No 476
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.31 E-value=0.083 Score=52.36 Aligned_cols=55 Identities=20% Similarity=0.332 Sum_probs=34.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhcc---------CCCCEEEEEEecCCC-CHHHHHHHHHHHc
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKFLESR---------TNFDFVIWVVVSKDP-RLEKIQEDIGKRI 98 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~~~~~---------~~~~~~~w~~~~~~~-~~~~~~~~l~~~l 98 (769)
+..|+|++|+|||+||.+++.....-. .....+++++...+. .+.+-+..+...+
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~ 67 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHL 67 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhc
Confidence 567999999999999999988763211 122346666655432 3444455555544
No 477
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.31 E-value=0.025 Score=56.89 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=39.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHH
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGK 96 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 96 (769)
...+++.|+|++|+|||+++.+++.+. ......++|+..... ...+.+.+.+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~~~ 72 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENARS 72 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHHHH
Confidence 356799999999999999999999997 344677899876553 4445444443
No 478
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.31 E-value=0.019 Score=59.96 Aligned_cols=96 Identities=20% Similarity=0.258 Sum_probs=49.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRS 120 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 120 (769)
..+.|+|+|+.|+||||+++.++..+......-..++.+ ..+... ....+............+.........+...
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~--EdpiE~--~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~a 208 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTY--EAPIEF--VYDEIETISASVCQSEIPRHLNNFAAGVRNA 208 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEe--CCCceE--eccccccccceeeeeeccccccCHHHHHHHH
Confidence 457999999999999999999988762111111123332 221111 0111100000000000111112334445567
Q ss_pred hccceEEEEEcccccccccc
Q 039535 121 LREKRIVLLLDDIWERLDLT 140 (769)
Q Consensus 121 l~~~~~llvlDd~~~~~~~~ 140 (769)
++..+-.+++.++.+.+...
T Consensus 209 LR~~Pd~i~vGEiRd~et~~ 228 (358)
T TIGR02524 209 LRRKPHAILVGEARDAETIS 228 (358)
T ss_pred hccCCCEEeeeeeCCHHHHH
Confidence 77788899999886655444
No 479
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.29 E-value=0.016 Score=54.26 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...|+|+|++|+||||+|+.+++++
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999997
No 480
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=95.28 E-value=0.05 Score=57.84 Aligned_cols=90 Identities=20% Similarity=0.247 Sum_probs=48.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEec-CCCCHHHHHHHHHHHcCCCC------CCC----CCc
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVS-KDPRLEKIQEDIGKRIGLVD------DSW----KSK 108 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~l~~~l~~~~------~~~----~~~ 108 (769)
.+...++|.|+.|+|||||+..++... ..+..+...+. +..+..++.......-+... +.. ...
T Consensus 153 ~~GQ~igI~G~sGaGKSTLl~~I~g~~-----~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl 227 (434)
T PRK07196 153 GKGQRVGLMAGSGVGKSVLLGMITRYT-----QADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRI 227 (434)
T ss_pred ecceEEEEECCCCCCccHHHHHHhccc-----CCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhH
Confidence 455689999999999999999887765 11222222222 23344444444333332210 000 111
Q ss_pred cHHHHHHHHHHHh--ccceEEEEEcccc
Q 039535 109 SVEEKALDIFRSL--REKRIVLLLDDIW 134 (769)
Q Consensus 109 ~~~~~~~~l~~~l--~~~~~llvlDd~~ 134 (769)
...+....+.+.+ .++++|+++|++-
T Consensus 228 ~a~e~a~~iAEyfr~~g~~Vll~~Dslt 255 (434)
T PRK07196 228 KATELCHAIATYYRDKGHDVLLLVDSLT 255 (434)
T ss_pred HHHHHHHHHHHHhhhccCCEEEeecchh
Confidence 2222233333333 5789999999993
No 481
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.28 E-value=0.037 Score=51.75 Aligned_cols=37 Identities=27% Similarity=0.188 Sum_probs=27.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEe
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVV 81 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~ 81 (769)
+..+|+|.||+|+|||||.+.+..-. ..-.+.+|++.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE----~~~~G~I~i~g 63 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE----EPDSGSITVDG 63 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc----CCCCceEEECC
Confidence 45699999999999999998765442 34446777753
No 482
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.27 E-value=0.031 Score=59.50 Aligned_cols=90 Identities=20% Similarity=0.289 Sum_probs=50.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC-CCCHHHHHHHHHHHcCCCC-----CCCCCccHHH-
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK-DPRLEKIQEDIGKRIGLVD-----DSWKSKSVEE- 112 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~l~~~l~~~~-----~~~~~~~~~~- 112 (769)
.....++|.|+.|+|||||+..++... ..+.++...+.. ..+..++...+...-.... ..........
T Consensus 166 ~~GqrigI~G~sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~ 240 (451)
T PRK05688 166 GRGQRLGLFAGTGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRL 240 (451)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHH
Confidence 445678999999999999999887754 123333333333 3455666555554432211 0001111111
Q ss_pred ----HHHHHHHHh--ccceEEEEEcccc
Q 039535 113 ----KALDIFRSL--REKRIVLLLDDIW 134 (769)
Q Consensus 113 ----~~~~l~~~l--~~~~~llvlDd~~ 134 (769)
....+.+++ .++++|+++|++-
T Consensus 241 ~a~~~a~aiAEyfrd~G~~VLl~~DslT 268 (451)
T PRK05688 241 RAAMYCTRIAEYFRDKGKNVLLLMDSLT 268 (451)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEecchh
Confidence 112233333 5789999999993
No 483
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.27 E-value=0.017 Score=54.18 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+++++.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998886
No 484
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.26 E-value=0.035 Score=52.98 Aligned_cols=35 Identities=29% Similarity=0.436 Sum_probs=27.3
Q ss_pred HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 32 QVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 32 ~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+.+..+..++.++++|.|++|+|||++++.+...+
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 33344433556789999999999999999988887
No 485
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.25 E-value=0.016 Score=54.65 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+++|+|++|+||||+++.++..+
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998886
No 486
>PRK00625 shikimate kinase; Provisional
Probab=95.24 E-value=0.017 Score=53.66 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.|+|+|++|+||||+++.+++++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 487
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.23 E-value=0.038 Score=58.60 Aligned_cols=90 Identities=22% Similarity=0.339 Sum_probs=52.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC-CCCHHHHHHHHHHHcCCCC-----CCCCCccHHH-
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK-DPRLEKIQEDIGKRIGLVD-----DSWKSKSVEE- 112 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~l~~~l~~~~-----~~~~~~~~~~- 112 (769)
.+...++|.|++|+|||||+..++... ..+.+++.-++. ..+..++.+..+..-+... ..........
T Consensus 160 ~~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (439)
T PRK06936 160 GEGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERA 234 (439)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHH
Confidence 455688999999999999999998876 224566665554 4556666655443322110 0001111111
Q ss_pred ----HHHHHHHHh--ccceEEEEEcccc
Q 039535 113 ----KALDIFRSL--REKRIVLLLDDIW 134 (769)
Q Consensus 113 ----~~~~l~~~l--~~~~~llvlDd~~ 134 (769)
..-.+.+++ .++++|+++|++-
T Consensus 235 ~a~~~a~tiAEyfrd~G~~Vll~~DslT 262 (439)
T PRK06936 235 KAGFVATSIAEYFRDQGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 111233333 5789999999993
No 488
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.22 E-value=0.064 Score=55.30 Aligned_cols=89 Identities=22% Similarity=0.302 Sum_probs=59.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEE-EEEecCCCCHHHHHHHHHHHcCCCCC-----CCCCccHH--
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVI-WVVVSKDPRLEKIQEDIGKRIGLVDD-----SWKSKSVE-- 111 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~-w~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~~~~-- 111 (769)
+....++|...+|+|||||.-++++.- .++.++ -.-..+..++.++.++.+..-+.... ..+.....
T Consensus 161 G~GQRiGIFAgsGVGKStLLgMiar~t-----~aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~ 235 (441)
T COG1157 161 GKGQRIGIFAGSGVGKSTLLGMIARNT-----EADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRL 235 (441)
T ss_pred ccCceeEEEecCCCcHHHHHHHHhccc-----cCCEEEEEEeeccchhHHHHHHHhcchhhccceEEEEECCCCCHHHHH
Confidence 555689999999999999999999875 445333 33344567888888887766654321 11112222
Q ss_pred ---HHHHHHHHHh--ccceEEEEEccc
Q 039535 112 ---EKALDIFRSL--REKRIVLLLDDI 133 (769)
Q Consensus 112 ---~~~~~l~~~l--~~~~~llvlDd~ 133 (769)
.....+.+++ +++++|+++|-+
T Consensus 236 ~aa~~At~IAEyFRDqG~~VLL~mDSl 262 (441)
T COG1157 236 KAAFTATTIAEYFRDQGKRVLLIMDSL 262 (441)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeecH
Confidence 2234466666 567999999998
No 489
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=95.22 E-value=0.077 Score=57.69 Aligned_cols=80 Identities=21% Similarity=0.397 Sum_probs=52.0
Q ss_pred CccccccCCCCccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC-CCCHH
Q 039535 10 PESVADERPTERTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK-DPRLE 88 (769)
Q Consensus 10 ~~~~~~~~~~~~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~ 88 (769)
|+++....+....++--.+.++.+.-. .+.+.++|.|+.|+|||+|+.++++. ...+.++++-++. ..++.
T Consensus 197 p~p~~~R~~~~~PL~TG~RvID~lfPi---~kGqr~~I~gg~G~GKT~l~~~lak~-----s~aDviVyvg~GERG~Em~ 268 (591)
T TIGR01042 197 PRPVTEKLPANTPLLTGQRVLDALFPC---VQGGTTAIPGAFGCGKTVISQSLSKY-----SNSDAIVYVGCGERGNEMA 268 (591)
T ss_pred CCChhhccCCCCccccchhhhhhccch---hcCCeEEEEcCCCcCHHHHHHHHHhc-----cCcCEEEEEEEeechHHHH
Confidence 344444444444555444444444333 45568899999999999999998654 3456778877665 46677
Q ss_pred HHHHHHHHH
Q 039535 89 KIQEDIGKR 97 (769)
Q Consensus 89 ~~~~~l~~~ 97 (769)
+++.++-+.
T Consensus 269 evle~fp~l 277 (591)
T TIGR01042 269 EVLMDFPEL 277 (591)
T ss_pred HHHHHhHhh
Confidence 777776543
No 490
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.20 E-value=0.013 Score=53.88 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKFL 67 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~~ 67 (769)
+.+.++|.||+||||+|+++++.++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHH
Confidence 4688999999999999999999993
No 491
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.20 E-value=0.96 Score=47.34 Aligned_cols=58 Identities=16% Similarity=0.240 Sum_probs=38.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCC
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLV 101 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~ 101 (769)
+.+|..+|..|+||||.+..+++.+++ +..-...+-.++. .+...+-++.+..+.+..
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~-RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTY-RPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccC-ChHHHHHHHHHHHHcCCc
Confidence 467889999999999999999999943 3222223322222 234555666777777654
No 492
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.19 E-value=0.039 Score=58.72 Aligned_cols=93 Identities=23% Similarity=0.373 Sum_probs=57.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC-CCCHHHHHHHHHHHcCCCC-----CCCCCccHH--
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK-DPRLEKIQEDIGKRIGLVD-----DSWKSKSVE-- 111 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~l~~~l~~~~-----~~~~~~~~~-- 111 (769)
.+...++|.|.+|+|||+|+.+++.... +.+.+.++++-++. ..+..++.+.+...-.... .........
T Consensus 136 gkGQr~~Ifg~~G~GKt~l~~~~~~~~~--~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~ 213 (449)
T TIGR03305 136 ERGGKAGLFGGAGVGKTVLLTEMIHNMV--GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARF 213 (449)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHH
Confidence 4456789999999999999999988862 22346777777655 4566777777665322110 000111111
Q ss_pred ---HHHHHHHHHh---ccceEEEEEcccc
Q 039535 112 ---EKALDIFRSL---REKRIVLLLDDIW 134 (769)
Q Consensus 112 ---~~~~~l~~~l---~~~~~llvlDd~~ 134 (769)
...-.+.+++ .++++|+++|++-
T Consensus 214 ~~~~~a~tiAEyfrd~~G~~VLl~~DslT 242 (449)
T TIGR03305 214 RVGHTALTMAEYFRDDEKQDVLLLIDNIF 242 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecChH
Confidence 1122344554 4589999999993
No 493
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.19 E-value=0.046 Score=57.83 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 27 QSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 27 ~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+..++.+++.+.......++|.|+||+|||++.+++.+.+
T Consensus 7 ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 7 RRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 3445556666655666789999999999999999999988
No 494
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.11 E-value=0.096 Score=56.05 Aligned_cols=93 Identities=14% Similarity=0.166 Sum_probs=51.4
Q ss_pred CCceEEEEEcCCCCcHHHHH-HHHHhhhhhc-----cCCCCEEEEEEecCCC-CHHHHHHHHHHHcCCCCC-------CC
Q 039535 40 ESAGIIGLYGMGGVGKTTLL-IHINNKFLES-----RTNFDFVIWVVVSKDP-RLEKIQEDIGKRIGLVDD-------SW 105 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa-~~~~~~~~~~-----~~~~~~~~w~~~~~~~-~~~~~~~~l~~~l~~~~~-------~~ 105 (769)
++...+.|.|..|+|||+|| ..+++.. .. ......++++-+++.. ++.+ +...++.-+.... ..
T Consensus 187 GRGQR~lIfGd~GtGKTtLAld~IinQ~-~~~~~~~~~~~~v~VyvaIGeR~rEV~e-i~~~L~e~GaL~~TvVV~AtAd 264 (574)
T PTZ00185 187 GRGQRELIVGDRQTGKTSIAVSTIINQV-RINQQILSKNAVISIYVSIGQRCSNVAR-IHRLLRSYGALRYTTVMAATAA 264 (574)
T ss_pred cCCCEEEeecCCCCChHHHHHHHHHhhh-hhccccccCCCCEEEEEEeccchHHHHH-HHHHHHhcCCccceEEEEECCC
Confidence 45567889999999999997 5566664 11 1233567777777654 4444 4444444331110 00
Q ss_pred CCccHHH----HHHHHHHHh--ccceEEEEEcccc
Q 039535 106 KSKSVEE----KALDIFRSL--REKRIVLLLDDIW 134 (769)
Q Consensus 106 ~~~~~~~----~~~~l~~~l--~~~~~llvlDd~~ 134 (769)
.+....- ..-.+.+++ .++++|+|+||+-
T Consensus 265 ep~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 265 EPAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 1111111 111122333 5789999999994
No 495
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.10 E-value=0.05 Score=46.76 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....+|.+.|+=|+||||+++.+++.+
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 344799999999999999999999988
No 496
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.09 E-value=0.052 Score=51.26 Aligned_cols=25 Identities=40% Similarity=0.466 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+.++|.||+|+||+|++..++.+.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3678999999999999999998886
No 497
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.09 E-value=0.016 Score=52.76 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+++|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36899999999999999998875
No 498
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.08 E-value=0.061 Score=55.34 Aligned_cols=36 Identities=28% Similarity=0.496 Sum_probs=28.6
Q ss_pred HHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 31 EQVWRCLIE--ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 31 ~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..+.+.+.. ++..+|+|.|++|+|||||+..+...+
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 445554432 456789999999999999999999988
No 499
>PRK15453 phosphoribulokinase; Provisional
Probab=95.07 E-value=0.17 Score=50.19 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+..+|+|.|.+|+||||+|+.+++.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999877
No 500
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.07 E-value=0.034 Score=50.31 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 27 QSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 27 ~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...++++.+++. + +++++.|++|+|||||+..+....
T Consensus 23 ~~g~~~l~~~l~--~-k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 23 GEGIEELKELLK--G-KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTTHHHHHHHHT--T-SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CcCHHHHHHHhc--C-CEEEEECCCCCCHHHHHHHHHhhc
Confidence 456777888774 3 799999999999999999998875
Done!