Query 039535
Match_columns 769
No_of_seqs 281 out of 3429
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 18:24:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039535.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039535hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 9.7E-38 3.3E-42 348.2 23.0 311 24-357 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 8E-32 2.7E-36 334.3 26.3 316 15-356 118-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 9.7E-33 3.3E-37 309.7 16.0 286 21-349 128-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.9E-30 6.5E-35 294.5 27.0 311 15-353 118-449 (591)
5 3v47_A TOLL-like receptor 5B a 99.9 5.2E-25 1.8E-29 242.0 19.1 350 360-746 11-408 (455)
6 4fmz_A Internalin; leucine ric 99.9 3.6E-25 1.2E-29 233.8 16.8 306 376-744 39-344 (347)
7 2z81_A CD282 antigen, TOLL-lik 99.9 4E-24 1.4E-28 240.9 24.5 172 364-555 10-186 (549)
8 1o6v_A Internalin A; bacterial 99.9 2.1E-24 7E-29 237.3 20.8 260 362-660 49-319 (466)
9 3vq2_A TLR4, TOLL-like recepto 99.9 7.8E-24 2.7E-28 241.5 23.7 151 362-518 14-169 (606)
10 1o6v_A Internalin A; bacterial 99.9 5E-24 1.7E-28 234.3 20.5 317 380-743 45-385 (466)
11 2z63_A TOLL-like receptor 4, v 99.9 9.9E-24 3.4E-28 239.0 23.0 151 361-517 9-164 (570)
12 3j0a_A TOLL-like receptor 5; m 99.9 2.2E-23 7.4E-28 245.9 25.8 152 361-517 6-163 (844)
13 4eco_A Uncharacterized protein 99.9 2.3E-24 7.8E-29 245.6 14.5 328 377-744 202-598 (636)
14 4ecn_A Leucine-rich repeat pro 99.9 5.8E-24 2E-28 246.1 17.7 329 377-744 444-838 (876)
15 4ecn_A Leucine-rich repeat pro 99.9 9.5E-24 3.2E-28 244.3 18.9 293 419-743 440-816 (876)
16 4fmz_A Internalin; leucine ric 99.9 6.8E-24 2.3E-28 224.0 15.1 282 398-744 39-322 (347)
17 3o6n_A APL1; leucine-rich repe 99.9 2E-23 7E-28 224.0 18.6 303 378-744 42-350 (390)
18 2id5_A Lingo-1, leucine rich r 99.9 4.1E-23 1.4E-27 228.0 21.0 172 361-553 13-188 (477)
19 4eco_A Uncharacterized protein 99.9 1.6E-23 5.3E-28 238.7 17.4 60 684-744 511-577 (636)
20 3t6q_A CD180 antigen; protein- 99.9 9.9E-23 3.4E-27 232.4 21.8 357 361-744 14-460 (606)
21 2z7x_B TOLL-like receptor 1, v 99.9 1.9E-22 6.6E-27 225.4 22.9 366 362-745 3-480 (520)
22 3rgz_A Protein brassinosteroid 99.9 2.6E-23 8.8E-28 242.7 15.1 169 364-552 183-354 (768)
23 3vq2_A TLR4, TOLL-like recepto 99.9 1.3E-22 4.5E-27 231.3 20.4 370 361-744 34-556 (606)
24 3t6q_A CD180 antigen; protein- 99.9 1.3E-22 4.6E-27 231.3 18.3 267 450-747 274-561 (606)
25 3rgz_A Protein brassinosteroid 99.9 3.3E-23 1.1E-27 241.7 13.3 131 379-514 267-406 (768)
26 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.9E-21 6.6E-26 219.1 27.2 361 362-744 34-508 (562)
27 3oja_B Anopheles plasmodium-re 99.9 2E-22 6.7E-27 228.4 19.1 302 379-744 49-356 (597)
28 2z81_A CD282 antigen, TOLL-lik 99.9 1.2E-22 4.2E-27 228.7 16.6 352 364-745 31-509 (549)
29 3o6n_A APL1; leucine-rich repe 99.9 2.2E-22 7.5E-27 215.9 16.4 284 401-744 43-329 (390)
30 1ziw_A TOLL-like receptor 3; i 99.9 5.5E-22 1.9E-26 229.4 20.3 151 361-517 6-160 (680)
31 3bz5_A Internalin-J, INLJ; leu 99.9 5.7E-22 1.9E-26 215.9 18.3 301 361-727 44-355 (457)
32 2z7x_B TOLL-like receptor 1, v 99.9 1.4E-21 4.7E-26 218.4 20.4 341 361-723 23-481 (520)
33 3j0a_A TOLL-like receptor 5; m 99.9 2.6E-21 8.9E-26 228.2 23.2 302 385-727 8-378 (844)
34 2z63_A TOLL-like receptor 4, v 99.9 1.5E-21 5.1E-26 221.1 18.5 365 362-744 31-529 (570)
35 3oja_B Anopheles plasmodium-re 99.9 7.4E-22 2.5E-26 223.7 15.9 284 401-744 49-335 (597)
36 3v47_A TOLL-like receptor 5B a 99.9 6.1E-21 2.1E-25 209.4 21.9 342 361-728 32-413 (455)
37 1ziw_A TOLL-like receptor 3; i 99.9 1.1E-20 3.6E-25 218.6 23.5 373 361-743 75-546 (680)
38 3bz5_A Internalin-J, INLJ; leu 99.9 4E-21 1.4E-25 209.2 18.6 119 380-513 41-159 (457)
39 4g8a_A TOLL-like receptor 4; l 99.9 6.6E-21 2.3E-25 218.8 19.5 363 362-744 34-578 (635)
40 4fcg_A Uncharacterized protein 99.8 1E-20 3.6E-25 196.9 15.9 108 402-515 80-196 (328)
41 2ft3_A Biglycan; proteoglycan, 99.8 2.1E-20 7.1E-25 195.7 16.8 238 382-660 34-274 (332)
42 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 9.9E-20 3.4E-24 205.1 22.9 147 382-553 32-181 (562)
43 1xku_A Decorin; proteoglycan, 99.8 6.4E-20 2.2E-24 191.9 18.9 239 382-660 32-273 (330)
44 1ogq_A PGIP-2, polygalacturona 99.8 3.3E-20 1.1E-24 192.0 15.1 130 381-515 50-187 (313)
45 2z80_A TOLL-like receptor 2, v 99.8 5.8E-20 2E-24 194.1 17.1 268 364-660 36-311 (353)
46 4fcg_A Uncharacterized protein 99.8 1.2E-19 4.1E-24 188.9 18.5 228 427-741 80-309 (328)
47 2id5_A Lingo-1, leucine rich r 99.8 1E-19 3.5E-24 200.9 18.8 287 362-696 35-330 (477)
48 1jl5_A Outer protein YOPM; leu 99.8 5.5E-19 1.9E-23 192.1 21.7 272 381-721 111-407 (454)
49 1jl5_A Outer protein YOPM; leu 99.8 8E-19 2.7E-23 190.8 21.2 298 362-727 114-433 (454)
50 1xku_A Decorin; proteoglycan, 99.8 1.7E-18 5.8E-23 181.0 19.6 126 403-554 31-158 (330)
51 3zyi_A Leucine-rich repeat-con 99.8 7.5E-19 2.6E-23 192.1 15.6 239 361-661 56-301 (452)
52 2z80_A TOLL-like receptor 2, v 99.8 5.1E-19 1.7E-23 186.8 13.5 271 385-724 35-315 (353)
53 2ft3_A Biglycan; proteoglycan, 99.8 7.6E-19 2.6E-23 183.8 14.3 284 403-744 33-331 (332)
54 3zyj_A Leucine-rich repeat-con 99.8 1.2E-18 4.1E-23 189.8 15.8 239 361-661 45-290 (440)
55 4g8a_A TOLL-like receptor 4; l 99.8 4.8E-18 1.6E-22 195.0 21.4 130 403-551 52-183 (635)
56 3g06_A SSPH2 (leucine-rich rep 99.8 5.1E-18 1.8E-22 190.1 20.7 253 361-696 42-294 (622)
57 1ogq_A PGIP-2, polygalacturona 99.8 2E-18 6.9E-23 178.5 15.5 253 403-728 50-309 (313)
58 3g06_A SSPH2 (leucine-rich rep 99.8 1.1E-17 3.8E-22 187.3 20.3 257 381-722 40-296 (622)
59 2z66_A Variable lymphocyte rec 99.8 3.2E-18 1.1E-22 176.9 14.3 111 403-515 28-139 (306)
60 3o53_A Protein LRIM1, AGAP0063 99.8 8.9E-19 3.1E-23 181.7 8.4 121 382-515 35-157 (317)
61 3zyi_A Leucine-rich repeat-con 99.7 1.3E-17 4.3E-22 182.4 17.8 239 385-721 58-301 (452)
62 3zyj_A Leucine-rich repeat-con 99.7 2.1E-17 7.3E-22 179.9 18.8 240 385-722 47-291 (440)
63 1ozn_A Reticulon 4 receptor; N 99.7 6.7E-18 2.3E-22 172.5 12.2 147 364-515 16-166 (285)
64 3ogk_B Coronatine-insensitive 99.7 1.5E-18 5.1E-23 197.2 7.5 269 425-727 217-529 (592)
65 1z7x_W Ribonuclease inhibitor; 99.7 1.4E-19 4.6E-24 199.1 -1.7 158 381-553 3-182 (461)
66 2z66_A Variable lymphocyte rec 99.7 6.3E-18 2.2E-22 174.7 11.0 169 363-551 11-185 (306)
67 3o53_A Protein LRIM1, AGAP0063 99.7 7.7E-19 2.6E-23 182.2 2.6 248 400-728 31-280 (317)
68 2p1m_B Transport inhibitor res 99.7 1.5E-18 5.1E-23 197.4 3.9 131 381-512 105-245 (594)
69 2xwt_C Thyrotropin receptor; s 99.7 8.1E-17 2.8E-21 159.7 15.7 139 371-515 23-169 (239)
70 3oja_A Leucine-rich immune mol 99.7 2.1E-17 7.3E-22 181.5 10.4 122 381-515 34-157 (487)
71 1ozn_A Reticulon 4 receptor; N 99.7 9.9E-17 3.4E-21 163.7 14.3 218 384-662 14-237 (285)
72 2z62_A TOLL-like receptor 4, v 99.7 2.4E-16 8.1E-21 160.1 16.8 218 363-661 11-235 (276)
73 1h6u_A Internalin H; cell adhe 99.7 8.8E-17 3E-21 165.7 13.2 124 380-514 40-163 (308)
74 3ogk_B Coronatine-insensitive 99.7 3.6E-18 1.2E-22 194.1 2.8 348 380-744 111-524 (592)
75 2qen_A Walker-type ATPase; unk 99.7 4.3E-16 1.5E-20 164.3 18.2 293 17-349 8-348 (350)
76 1z7x_W Ribonuclease inhibitor; 99.7 3.5E-18 1.2E-22 187.9 2.1 288 404-724 86-411 (461)
77 3oja_A Leucine-rich immune mol 99.7 9.8E-17 3.4E-21 176.2 13.5 243 400-724 31-276 (487)
78 1wwl_A Monocyte differentiatio 99.7 9.4E-18 3.2E-22 173.6 3.4 221 405-696 65-306 (312)
79 2p1m_B Transport inhibitor res 99.7 1.9E-17 6.4E-22 188.3 5.1 310 381-722 130-518 (594)
80 1h6u_A Internalin H; cell adhe 99.7 2.6E-16 8.8E-21 162.2 12.7 106 399-515 37-142 (308)
81 2xwt_C Thyrotropin receptor; s 99.7 3.6E-16 1.2E-20 155.0 12.2 83 626-723 154-239 (239)
82 2fna_A Conserved hypothetical 99.7 3.7E-15 1.3E-19 157.6 20.3 290 19-348 11-355 (357)
83 2ast_B S-phase kinase-associat 99.6 1.2E-16 4.2E-21 167.4 7.2 123 383-512 49-178 (336)
84 2o6q_A Variable lymphocyte rec 99.6 1.4E-15 4.9E-20 153.6 14.1 171 361-552 18-192 (270)
85 1w5s_A Origin recognition comp 99.6 3E-15 1E-19 161.7 17.1 299 19-334 20-371 (412)
86 1wwl_A Monocyte differentiatio 99.6 6.7E-17 2.3E-21 167.2 2.7 249 400-721 40-307 (312)
87 3rfs_A Internalin B, repeat mo 99.6 2.9E-16 1E-20 158.8 7.3 201 377-644 37-239 (272)
88 4ay9_X Follicle-stimulating ho 99.6 3.6E-15 1.2E-19 156.8 15.1 241 362-662 12-258 (350)
89 4ay9_X Follicle-stimulating ho 99.6 2.3E-15 7.9E-20 158.2 12.6 239 406-719 12-255 (350)
90 1p9a_G Platelet glycoprotein I 99.6 2.8E-15 9.5E-20 152.8 12.5 131 379-516 8-138 (290)
91 2o6q_A Variable lymphocyte rec 99.6 3.2E-15 1.1E-19 151.0 12.2 127 383-515 18-146 (270)
92 2ast_B S-phase kinase-associat 99.6 2.4E-16 8.3E-21 165.2 4.0 252 404-727 48-309 (336)
93 3rfs_A Internalin B, repeat mo 99.6 1.1E-14 3.7E-19 147.2 13.1 171 361-551 43-215 (272)
94 1p9a_G Platelet glycoprotein I 99.5 1.7E-14 5.8E-19 147.0 12.4 170 361-553 12-184 (290)
95 1h6t_A Internalin B; cell adhe 99.5 1.2E-14 4.1E-19 148.2 11.0 103 401-514 44-146 (291)
96 2ca6_A RAN GTPase-activating p 99.5 2.8E-15 9.6E-20 160.2 6.4 248 398-696 27-313 (386)
97 4ezg_A Putative uncharacterize 99.5 3.3E-14 1.1E-18 136.0 12.9 152 378-554 41-194 (197)
98 3m19_A Variable lymphocyte rec 99.5 4E-14 1.4E-18 141.2 13.8 172 361-553 16-191 (251)
99 2ca6_A RAN GTPase-activating p 99.5 2E-15 6.9E-20 161.3 4.0 246 424-721 28-314 (386)
100 2z62_A TOLL-like receptor 4, v 99.5 3.3E-14 1.1E-18 144.2 11.3 151 361-516 30-191 (276)
101 4glp_A Monocyte differentiatio 99.5 1.4E-14 4.7E-19 149.7 7.6 111 402-515 90-210 (310)
102 2qby_B CDC6 homolog 3, cell di 99.5 7.3E-13 2.5E-17 141.4 20.8 291 20-334 19-339 (384)
103 1m9s_A Internalin B; cell inva 99.5 3E-14 1E-18 159.5 9.9 105 400-515 40-144 (605)
104 1fnn_A CDC6P, cell division co 99.5 1.9E-12 6.4E-17 138.5 23.2 292 19-334 15-351 (389)
105 3m19_A Variable lymphocyte rec 99.5 8.6E-14 2.9E-18 138.8 11.2 151 382-553 15-167 (251)
106 3e6j_A Variable lymphocyte rec 99.5 2.1E-13 7.3E-18 133.6 13.0 147 363-515 23-172 (229)
107 1h6t_A Internalin B; cell adhe 99.5 3.1E-13 1.1E-17 137.7 14.5 140 365-515 52-191 (291)
108 3goz_A Leucine-rich repeat-con 99.5 8E-14 2.7E-18 147.3 10.3 259 386-696 3-294 (362)
109 2v1u_A Cell division control p 99.5 9.5E-13 3.3E-17 140.7 17.7 294 19-334 17-351 (387)
110 1m9s_A Internalin B; cell inva 99.5 6.6E-14 2.3E-18 156.6 8.6 151 377-555 39-189 (605)
111 4ezg_A Putative uncharacterize 99.5 5.6E-13 1.9E-17 127.4 13.6 147 361-515 46-194 (197)
112 1xeu_A Internalin C; cellular 99.4 1.8E-13 6.1E-18 137.2 9.6 155 370-553 30-184 (263)
113 2qby_A CDC6 homolog 1, cell di 99.4 1.3E-12 4.5E-17 139.6 16.0 298 18-334 17-348 (386)
114 3goz_A Leucine-rich repeat-con 99.4 5.4E-14 1.9E-18 148.6 4.8 160 380-555 21-210 (362)
115 2v9t_B SLIT homolog 2 protein 99.4 8.7E-13 3E-17 128.3 12.7 147 363-515 15-165 (220)
116 2v70_A SLIT-2, SLIT homolog 2 99.4 9.8E-13 3.3E-17 127.9 11.7 145 364-514 16-165 (220)
117 2o6s_A Variable lymphocyte rec 99.4 1.6E-12 5.6E-17 125.5 13.0 147 363-515 11-161 (208)
118 4glp_A Monocyte differentiatio 99.4 2.2E-13 7.4E-18 140.6 6.9 132 381-516 91-238 (310)
119 3cvr_A Invasion plasmid antige 99.4 3.2E-12 1.1E-16 141.4 15.3 79 606-703 162-247 (571)
120 2v9t_B SLIT homolog 2 protein 99.4 1.6E-12 5.4E-17 126.5 11.4 148 385-553 15-164 (220)
121 2ell_A Acidic leucine-rich nuc 99.4 1.5E-12 5.2E-17 120.9 10.5 130 381-517 24-162 (168)
122 3cvr_A Invasion plasmid antige 99.4 4.6E-12 1.6E-16 140.1 15.4 114 382-515 60-173 (571)
123 2xot_A Amphoterin-induced prot 99.4 2.1E-12 7.2E-17 136.2 11.6 170 362-552 21-200 (361)
124 2v70_A SLIT-2, SLIT homolog 2 99.4 2.5E-12 8.7E-17 125.0 11.4 149 384-553 14-165 (220)
125 1xeu_A Internalin C; cellular 99.4 2.8E-13 9.6E-18 135.8 4.6 145 380-553 18-162 (263)
126 2chg_A Replication factor C sm 99.3 1.8E-11 6.1E-16 119.7 15.9 187 19-227 15-205 (226)
127 3e6j_A Variable lymphocyte rec 99.3 4.9E-12 1.7E-16 123.9 11.3 147 384-552 22-170 (229)
128 1njg_A DNA polymerase III subu 99.3 2.3E-11 7.8E-16 120.9 16.4 199 19-229 21-231 (250)
129 1a9n_A U2A', U2A'; complex (nu 99.3 1.5E-12 5.3E-17 121.8 7.3 126 381-513 19-151 (176)
130 2o6s_A Variable lymphocyte rec 99.3 1.1E-11 3.6E-16 119.7 12.1 146 385-551 11-158 (208)
131 2xot_A Amphoterin-induced prot 99.3 4.6E-12 1.6E-16 133.5 10.1 153 384-554 21-176 (361)
132 2je0_A Acidic leucine-rich nuc 99.3 4.8E-12 1.6E-16 114.8 7.4 106 403-515 17-126 (149)
133 2ell_A Acidic leucine-rich nuc 99.3 1.8E-11 6.2E-16 113.5 10.6 135 400-553 21-159 (168)
134 1a9n_A U2A', U2A'; complex (nu 99.2 8.4E-12 2.9E-16 116.8 7.4 143 395-556 11-155 (176)
135 2je0_A Acidic leucine-rich nuc 99.2 1.3E-11 4.5E-16 111.9 7.9 124 380-510 16-148 (149)
136 2o6r_A Variable lymphocyte rec 99.2 1E-10 3.6E-15 109.4 10.9 126 384-515 10-137 (177)
137 4b8c_D Glucose-repressible alc 99.2 2.7E-11 9.3E-16 139.1 8.0 110 399-515 220-329 (727)
138 3te6_A Regulatory protein SIR3 99.2 4.5E-10 1.6E-14 113.3 15.5 171 22-195 21-213 (318)
139 1sxj_B Activator 1 37 kDa subu 99.1 2.6E-10 8.8E-15 118.4 12.4 185 19-225 19-208 (323)
140 1w8a_A SLIT protein; signaling 99.1 1.4E-10 4.7E-15 110.0 9.3 126 384-515 11-139 (192)
141 2wfh_A SLIT homolog 2 protein 99.1 2E-10 6.9E-15 108.8 10.3 123 385-514 14-138 (193)
142 2wfh_A SLIT homolog 2 protein 99.1 2.1E-10 7.1E-15 108.8 9.9 124 406-552 13-137 (193)
143 1dce_A Protein (RAB geranylger 99.1 1.8E-10 6.2E-15 128.1 10.4 102 405-515 443-546 (567)
144 4b8c_D Glucose-repressible alc 99.1 1E-10 3.6E-15 134.3 7.1 104 380-488 223-327 (727)
145 1w8a_A SLIT protein; signaling 99.1 5E-10 1.7E-14 106.1 10.3 128 362-494 11-143 (192)
146 1hqc_A RUVB; extended AAA-ATPa 99.1 2.4E-09 8.3E-14 111.0 16.3 178 19-229 10-214 (324)
147 1dce_A Protein (RAB geranylger 99.1 2.5E-10 8.5E-15 126.9 9.3 121 382-509 442-567 (567)
148 3sb4_A Hypothetical leucine ri 99.1 7E-10 2.4E-14 115.2 12.2 119 380-510 24-156 (329)
149 2o6r_A Variable lymphocyte rec 99.0 9.2E-10 3.2E-14 102.9 11.1 127 363-494 11-141 (177)
150 1ds9_A Outer arm dynein; leuci 99.0 9.6E-12 3.3E-16 118.9 -2.6 110 398-515 43-153 (198)
151 1ds9_A Outer arm dynein; leuci 99.0 2E-11 6.8E-16 116.6 -1.1 130 405-556 25-155 (198)
152 1iqp_A RFCS; clamp loader, ext 99.0 8.8E-10 3E-14 114.5 10.4 186 19-229 23-215 (327)
153 2r9u_A Variable lymphocyte rec 98.9 2.1E-09 7.3E-14 99.8 9.1 102 406-515 15-118 (174)
154 2chq_A Replication factor C sm 98.9 4.8E-09 1.6E-13 108.5 12.5 183 20-227 16-205 (319)
155 3g39_A Variable lymphocyte rec 98.9 2.5E-09 8.5E-14 99.0 8.8 103 405-515 11-115 (170)
156 1jr3_A DNA polymerase III subu 98.9 1.2E-08 4.2E-13 108.0 14.9 196 20-227 15-222 (373)
157 3sb4_A Hypothetical leucine ri 98.9 4.1E-09 1.4E-13 109.4 10.9 215 380-656 48-327 (329)
158 4fdw_A Leucine rich hypothetic 98.9 3.5E-08 1.2E-12 104.7 17.4 103 399-511 132-235 (401)
159 2r9u_A Variable lymphocyte rec 98.8 7.8E-09 2.7E-13 95.9 9.2 105 384-494 15-121 (174)
160 3g39_A Variable lymphocyte rec 98.8 1E-08 3.5E-13 94.8 8.7 101 384-489 12-114 (170)
161 1jbk_A CLPB protein; beta barr 98.8 1.2E-08 4E-13 96.8 8.9 152 19-189 20-194 (195)
162 3bos_A Putative DNA replicatio 98.7 6.8E-09 2.3E-13 102.5 6.1 175 20-227 27-218 (242)
163 1sxj_D Activator 1 41 kDa subu 98.7 4.8E-08 1.6E-12 102.5 12.2 194 20-226 36-235 (353)
164 3pvs_A Replication-associated 98.7 1.5E-07 5.2E-12 100.6 15.9 179 19-227 24-216 (447)
165 3h4m_A Proteasome-activating n 98.7 1.1E-07 3.7E-12 96.3 13.8 201 19-247 15-260 (285)
166 1sxj_A Activator 1 95 kDa subu 98.7 1.3E-07 4.3E-12 104.1 14.8 188 20-225 38-252 (516)
167 4fdw_A Leucine rich hypothetic 98.7 1.3E-07 4.3E-12 100.4 13.5 142 382-550 136-280 (401)
168 1d2n_A N-ethylmaleimide-sensit 98.6 1.2E-06 3.9E-11 88.0 18.8 167 21-218 33-229 (272)
169 3pfi_A Holliday junction ATP-d 98.6 1.1E-06 3.7E-11 91.4 18.5 174 19-228 27-229 (338)
170 3uk6_A RUVB-like 2; hexameric 98.6 1.6E-07 5.6E-12 99.0 12.1 196 20-227 43-304 (368)
171 4fs7_A Uncharacterized protein 98.6 3.1E-07 1.1E-11 97.7 13.3 77 625-718 295-374 (394)
172 2z4s_A Chromosomal replication 98.6 2.8E-07 9.5E-12 98.9 12.8 185 21-226 105-306 (440)
173 1sxj_E Activator 1 40 kDa subu 98.6 7.7E-08 2.6E-12 100.9 8.1 197 20-227 13-238 (354)
174 3d8b_A Fidgetin-like protein 1 98.6 2.2E-06 7.5E-11 89.4 18.7 180 21-227 84-296 (357)
175 1xwi_A SKD1 protein; VPS4B, AA 98.5 4.2E-06 1.4E-10 85.8 20.1 180 21-228 12-225 (322)
176 3eie_A Vacuolar protein sortin 98.5 1E-06 3.5E-11 90.6 15.0 180 20-227 17-229 (322)
177 3syl_A Protein CBBX; photosynt 98.5 4.6E-07 1.6E-11 92.9 12.3 152 22-197 32-221 (309)
178 1a5t_A Delta prime, HOLB; zinc 98.5 1.1E-06 3.8E-11 90.8 15.0 170 26-226 7-205 (334)
179 3vfd_A Spastin; ATPase, microt 98.5 3.2E-06 1.1E-10 89.4 18.7 181 20-227 114-327 (389)
180 3u61_B DNA polymerase accessor 98.5 6.2E-07 2.1E-11 92.6 12.7 177 19-225 24-215 (324)
181 4fs7_A Uncharacterized protein 98.5 2.3E-06 7.8E-11 91.0 17.4 104 626-748 275-381 (394)
182 2qz4_A Paraplegin; AAA+, SPG7, 98.5 2.6E-06 9E-11 84.9 16.9 180 21-226 6-222 (262)
183 3b9p_A CG5977-PA, isoform A; A 98.5 5.9E-06 2E-10 84.0 19.8 179 20-227 20-234 (297)
184 2ifg_A High affinity nerve gro 98.5 2.2E-07 7.4E-12 97.2 8.9 93 392-488 20-114 (347)
185 3un9_A NLR family member X1; l 98.5 1.4E-08 4.9E-13 106.5 -0.2 162 381-556 72-254 (372)
186 1sxj_C Activator 1 40 kDa subu 98.5 5.6E-07 1.9E-11 93.5 11.9 179 21-225 25-211 (340)
187 2ifg_A High affinity nerve gro 98.5 2.3E-07 7.7E-12 97.0 8.8 102 407-515 12-116 (347)
188 2p65_A Hypothetical protein PF 98.5 6.9E-07 2.4E-11 83.8 10.8 48 19-66 20-67 (187)
189 2qp9_X Vacuolar protein sortin 98.4 3.5E-06 1.2E-10 87.7 16.5 179 20-227 50-262 (355)
190 1l8q_A Chromosomal replication 98.4 1.1E-06 3.7E-11 90.7 12.3 179 20-224 10-206 (324)
191 3e4g_A ATP synthase subunit S, 98.4 5.8E-08 2E-12 88.2 1.7 88 627-726 61-155 (176)
192 3un9_A NLR family member X1; l 98.4 4.6E-08 1.6E-12 102.7 0.9 139 402-555 71-225 (372)
193 2zan_A Vacuolar protein sortin 98.4 8.5E-06 2.9E-10 87.5 17.4 182 20-227 133-346 (444)
194 3cf0_A Transitional endoplasmi 98.3 1.2E-05 4E-10 81.7 16.5 173 21-221 15-223 (301)
195 4b4t_J 26S protease regulatory 98.3 1.4E-05 4.9E-10 82.5 16.8 172 21-220 148-355 (405)
196 2gno_A DNA polymerase III, gam 98.3 2.5E-06 8.4E-11 86.3 10.8 147 25-193 1-152 (305)
197 3pxg_A Negative regulator of g 98.3 5.8E-06 2E-10 89.4 13.8 149 21-195 180-340 (468)
198 1qvr_A CLPB protein; coiled co 98.2 4.8E-06 1.7E-10 97.4 12.9 155 20-193 169-345 (854)
199 1in4_A RUVB, holliday junction 98.2 3.1E-05 1E-09 79.9 17.3 193 20-246 24-251 (334)
200 3hu3_A Transitional endoplasmi 98.2 2.3E-05 7.9E-10 84.6 16.5 176 21-225 204-414 (489)
201 4b4t_L 26S protease subunit RP 98.2 2.1E-05 7E-10 82.8 15.1 171 21-219 181-387 (437)
202 3n70_A Transport activator; si 98.2 1.5E-06 5.2E-11 77.6 5.6 45 22-66 2-48 (145)
203 4gt6_A Cell surface protein; l 98.2 5.1E-05 1.8E-09 80.5 18.4 108 399-511 59-169 (394)
204 4b4t_I 26S protease regulatory 98.2 1.3E-05 4.3E-10 83.1 12.9 171 21-219 182-388 (437)
205 1ofh_A ATP-dependent HSL prote 98.2 1.1E-05 3.6E-10 82.7 12.6 46 21-66 15-74 (310)
206 4b4t_H 26S protease regulatory 98.2 2.5E-05 8.5E-10 81.8 14.9 171 21-219 209-415 (467)
207 4gt6_A Cell surface protein; l 98.2 2E-05 6.7E-10 83.7 14.7 122 382-512 65-192 (394)
208 1r6b_X CLPA protein; AAA+, N-t 98.1 2.2E-05 7.6E-10 90.9 16.0 154 21-193 186-362 (758)
209 4b4t_M 26S protease regulatory 98.1 7.1E-06 2.4E-10 86.2 10.0 171 21-219 181-387 (434)
210 2r62_A Cell division protease 98.1 4.7E-06 1.6E-10 83.3 7.4 174 20-220 10-219 (268)
211 3pxi_A Negative regulator of g 98.1 4.8E-05 1.6E-09 87.9 16.3 150 21-195 180-340 (758)
212 1lv7_A FTSH; alpha/beta domain 98.0 0.00015 5E-09 71.8 17.3 178 20-225 11-224 (257)
213 4b4t_K 26S protease regulatory 98.0 0.00013 4.3E-09 76.7 16.5 171 21-219 172-379 (428)
214 3e4g_A ATP synthase subunit S, 98.0 1.5E-05 5E-10 72.4 7.5 86 428-515 61-152 (176)
215 3rw6_A Nuclear RNA export fact 97.9 2.6E-06 8.7E-11 83.7 2.4 109 399-509 137-258 (267)
216 2ra8_A Uncharacterized protein 97.9 1.2E-05 4.2E-10 83.4 7.5 21 173-193 36-57 (362)
217 2ra8_A Uncharacterized protein 97.9 1.2E-05 4.1E-10 83.5 6.8 57 424-485 168-227 (362)
218 2c9o_A RUVB-like 1; hexameric 97.9 6.2E-05 2.1E-09 81.2 12.5 46 21-66 37-87 (456)
219 2ce7_A Cell division protein F 97.9 0.00031 1.1E-08 75.1 17.2 173 20-219 15-221 (476)
220 4fcw_A Chaperone protein CLPB; 97.9 3.5E-05 1.2E-09 78.9 9.4 60 21-83 17-85 (311)
221 3co5_A Putative two-component 97.8 3.8E-06 1.3E-10 74.7 1.6 45 22-66 5-51 (143)
222 3ec2_A DNA replication protein 97.8 1.9E-05 6.3E-10 73.5 5.7 46 21-66 10-62 (180)
223 1iy2_A ATP-dependent metallopr 97.8 0.00027 9.3E-09 70.7 14.5 173 19-219 38-245 (278)
224 2w58_A DNAI, primosome compone 97.8 7.5E-05 2.6E-09 70.8 9.8 60 19-81 23-90 (202)
225 4h09_A Hypothetical leucine ri 97.8 0.00037 1.3E-08 73.3 16.1 122 381-513 46-169 (379)
226 1ojl_A Transcriptional regulat 97.7 7.1E-05 2.4E-09 75.8 9.4 46 21-66 2-49 (304)
227 1io0_A Tropomodulin; LRR prote 97.7 2.2E-05 7.5E-10 73.3 5.0 93 450-554 61-164 (185)
228 3t15_A Ribulose bisphosphate c 97.7 0.00027 9.2E-09 71.2 12.8 25 42-66 36-60 (293)
229 3cf2_A TER ATPase, transitiona 97.7 0.00028 9.7E-09 79.9 14.0 172 21-220 204-408 (806)
230 2r44_A Uncharacterized protein 97.6 0.00014 4.8E-09 75.0 9.3 44 21-66 27-70 (331)
231 1ixz_A ATP-dependent metallopr 97.6 0.00058 2E-08 67.3 13.4 172 20-219 15-221 (254)
232 3m6a_A ATP-dependent protease 97.6 0.00038 1.3E-08 76.5 12.8 155 21-193 81-266 (543)
233 1io0_A Tropomodulin; LRR prote 97.6 3.3E-05 1.1E-09 72.0 3.5 115 399-515 32-164 (185)
234 3pxi_A Negative regulator of g 97.6 4.4E-05 1.5E-09 88.2 5.1 147 21-193 491-675 (758)
235 4h09_A Hypothetical leucine ri 97.6 0.0028 9.7E-08 66.5 18.7 103 397-510 40-143 (379)
236 3rw6_A Nuclear RNA export fact 97.5 2.6E-05 8.9E-10 76.6 2.4 110 424-547 137-257 (267)
237 2kjq_A DNAA-related protein; s 97.5 1.5E-05 5E-10 71.2 0.5 54 23-82 20-73 (149)
238 2dhr_A FTSH; AAA+ protein, hex 97.5 0.0012 4.2E-08 70.9 15.3 201 19-247 29-273 (499)
239 2x8a_A Nuclear valosin-contain 97.5 0.0021 7.2E-08 63.8 15.1 150 21-194 10-192 (274)
240 1ypw_A Transitional endoplasmi 97.3 0.00093 3.2E-08 77.1 12.4 169 21-219 204-407 (806)
241 1g5t_A COB(I)alamin adenosyltr 97.1 0.00023 7.8E-09 65.5 2.8 117 42-163 28-163 (196)
242 1qvr_A CLPB protein; coiled co 97.1 0.00074 2.5E-08 78.9 7.9 46 21-66 558-612 (854)
243 2qgz_A Helicase loader, putati 97.0 0.00079 2.7E-08 68.1 6.7 47 20-66 123-176 (308)
244 2b8t_A Thymidine kinase; deoxy 97.0 0.00025 8.4E-09 67.5 2.6 115 41-165 11-128 (223)
245 1r6b_X CLPA protein; AAA+, N-t 97.0 0.0011 3.7E-08 76.7 8.4 46 21-66 458-512 (758)
246 2bjv_A PSP operon transcriptio 96.9 0.00078 2.7E-08 66.8 5.8 60 21-83 6-67 (265)
247 3io5_A Recombination and repai 96.9 0.003 1E-07 62.6 9.6 86 43-134 29-121 (333)
248 2vhj_A Ntpase P4, P4; non- hyd 96.9 0.00042 1.4E-08 69.0 3.6 70 42-134 123-192 (331)
249 1jr3_D DNA polymerase III, del 96.9 0.0058 2E-07 63.1 12.5 164 36-227 12-186 (343)
250 2cvh_A DNA repair and recombin 96.9 0.0031 1.1E-07 60.4 9.7 45 41-91 19-63 (220)
251 3cf2_A TER ATPase, transitiona 96.9 0.0026 9E-08 72.1 9.9 170 21-218 477-682 (806)
252 3hr8_A Protein RECA; alpha and 96.9 0.0022 7.6E-08 65.6 8.3 86 41-134 60-149 (356)
253 1n0w_A DNA repair protein RAD5 96.8 0.0038 1.3E-07 60.8 9.8 59 41-100 23-84 (243)
254 1v5w_A DMC1, meiotic recombina 96.8 0.011 3.8E-07 60.7 12.8 59 41-100 121-182 (343)
255 1g8p_A Magnesium-chelatase 38 96.7 0.0007 2.4E-08 70.3 3.6 47 20-66 23-69 (350)
256 2z43_A DNA repair and recombin 96.6 0.0072 2.5E-07 61.6 10.2 59 41-100 106-167 (324)
257 1xp8_A RECA protein, recombina 96.6 0.005 1.7E-07 63.5 8.7 86 41-134 73-162 (366)
258 2zr9_A Protein RECA, recombina 96.5 0.0059 2E-07 62.7 8.5 86 41-134 60-149 (349)
259 1u94_A RECA protein, recombina 96.5 0.0055 1.9E-07 63.0 8.2 86 41-134 62-151 (356)
260 3ice_A Transcription terminati 96.4 0.0018 6.2E-08 65.8 4.2 51 33-84 164-215 (422)
261 1sky_E F1-ATPase, F1-ATP synth 96.4 0.0082 2.8E-07 63.2 9.2 52 42-95 151-203 (473)
262 1rz3_A Hypothetical protein rb 96.4 0.0037 1.3E-07 58.8 6.0 42 25-66 2-46 (201)
263 3nbx_X ATPase RAVA; AAA+ ATPas 96.4 0.0024 8.4E-08 68.7 5.0 44 21-66 22-65 (500)
264 2i1q_A DNA repair and recombin 96.3 0.011 3.9E-07 60.2 9.6 59 41-100 97-168 (322)
265 3dm5_A SRP54, signal recogniti 96.2 0.022 7.4E-07 59.9 11.1 25 42-66 100-124 (443)
266 3bh0_A DNAB-like replicative h 96.2 0.021 7.3E-07 57.8 10.6 52 41-97 67-118 (315)
267 3umf_A Adenylate kinase; rossm 96.2 0.011 3.6E-07 56.0 7.7 27 40-66 27-53 (217)
268 3sr0_A Adenylate kinase; phosp 96.1 0.011 3.7E-07 55.6 7.4 23 44-66 2-24 (206)
269 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.013 4.5E-07 56.4 8.1 38 42-82 23-60 (235)
270 3c8u_A Fructokinase; YP_612366 96.0 0.0059 2E-07 57.8 5.1 40 27-66 5-46 (208)
271 3hws_A ATP-dependent CLP prote 96.0 0.0056 1.9E-07 63.7 5.4 46 21-66 15-75 (363)
272 1um8_A ATP-dependent CLP prote 96.0 0.006 2E-07 63.9 5.6 46 21-66 21-96 (376)
273 3lda_A DNA repair protein RAD5 96.0 0.028 9.5E-07 58.6 10.5 59 41-100 177-238 (400)
274 1tue_A Replication protein E1; 95.9 0.0083 2.8E-07 55.4 5.1 40 27-66 42-82 (212)
275 1qhx_A CPT, protein (chloramph 95.8 0.0049 1.7E-07 56.7 3.6 24 43-66 4-27 (178)
276 4a74_A DNA repair and recombin 95.7 0.042 1.4E-06 52.7 10.2 58 41-99 24-84 (231)
277 4a1f_A DNAB helicase, replicat 95.7 0.034 1.2E-06 56.4 9.6 53 41-98 45-97 (338)
278 1ypw_A Transitional endoplasmi 95.7 0.0017 6E-08 74.8 -0.0 151 21-195 477-663 (806)
279 3kb2_A SPBC2 prophage-derived 95.7 0.0057 2E-07 55.8 3.5 24 43-66 2-25 (173)
280 2ck3_D ATP synthase subunit be 95.6 0.039 1.3E-06 57.9 9.6 64 32-97 142-207 (482)
281 1g41_A Heat shock protein HSLU 95.6 0.0089 3E-07 62.9 4.7 46 21-66 15-74 (444)
282 1pzn_A RAD51, DNA repair and r 95.6 0.04 1.4E-06 56.5 9.6 57 41-98 130-189 (349)
283 3e70_C DPA, signal recognition 95.5 0.067 2.3E-06 54.1 10.9 57 41-100 128-185 (328)
284 1vma_A Cell division protein F 95.5 0.027 9.4E-07 56.4 7.9 89 42-133 104-195 (306)
285 3jvv_A Twitching mobility prot 95.5 0.0037 1.2E-07 64.3 1.5 112 40-165 121-233 (356)
286 3vaa_A Shikimate kinase, SK; s 95.5 0.0081 2.8E-07 56.4 3.8 26 41-66 24-49 (199)
287 3trf_A Shikimate kinase, SK; a 95.5 0.008 2.7E-07 55.6 3.7 25 42-66 5-29 (185)
288 3uie_A Adenylyl-sulfate kinase 95.5 0.011 3.8E-07 55.4 4.7 27 40-66 23-49 (200)
289 2px0_A Flagellar biosynthesis 95.4 0.066 2.2E-06 53.4 10.4 87 41-133 104-191 (296)
290 3cmu_A Protein RECA, recombina 95.4 0.031 1E-06 69.3 9.1 86 41-134 1426-1515(2050)
291 3tlx_A Adenylate kinase 2; str 95.4 0.019 6.4E-07 55.8 6.0 42 25-66 10-53 (243)
292 2ga8_A Hypothetical 39.9 kDa p 95.4 0.019 6.6E-07 58.1 6.2 43 24-66 2-48 (359)
293 2ffh_A Protein (FFH); SRP54, s 95.4 0.069 2.3E-06 56.0 10.6 39 42-83 98-136 (425)
294 1kgd_A CASK, peripheral plasma 95.4 0.0094 3.2E-07 54.9 3.7 25 42-66 5-29 (180)
295 1ex7_A Guanylate kinase; subst 95.4 0.0075 2.6E-07 55.4 2.9 24 43-66 2-25 (186)
296 1gvn_B Zeta; postsegregational 95.3 0.016 5.5E-07 57.7 5.4 26 41-66 32-57 (287)
297 1kag_A SKI, shikimate kinase I 95.3 0.0082 2.8E-07 54.8 3.0 24 43-66 5-28 (173)
298 1ly1_A Polynucleotide kinase; 95.3 0.011 3.7E-07 54.4 3.7 22 43-64 3-24 (181)
299 1zp6_A Hypothetical protein AT 95.2 0.011 3.8E-07 54.9 3.8 26 41-66 8-33 (191)
300 2rhm_A Putative kinase; P-loop 95.2 0.012 4.1E-07 54.8 4.0 25 42-66 5-29 (193)
301 1j8m_F SRP54, signal recogniti 95.2 0.067 2.3E-06 53.4 9.7 89 42-133 98-189 (297)
302 3tau_A Guanylate kinase, GMP k 95.2 0.011 3.9E-07 55.8 3.8 26 41-66 7-32 (208)
303 3lw7_A Adenylate kinase relate 95.2 0.01 3.5E-07 54.3 3.4 23 43-66 2-24 (179)
304 3kl4_A SRP54, signal recogniti 95.2 0.079 2.7E-06 55.6 10.4 26 42-67 97-122 (433)
305 1nks_A Adenylate kinase; therm 95.2 0.011 3.8E-07 55.0 3.7 24 43-66 2-25 (194)
306 4eun_A Thermoresistant glucoki 95.2 0.012 4.1E-07 55.2 3.8 26 41-66 28-53 (200)
307 3bgw_A DNAB-like replicative h 95.2 0.046 1.6E-06 58.1 8.7 51 41-96 196-246 (444)
308 3iij_A Coilin-interacting nucl 95.1 0.01 3.6E-07 54.5 3.2 25 42-66 11-35 (180)
309 1odf_A YGR205W, hypothetical 3 95.1 0.024 8.1E-07 56.5 6.0 28 40-67 29-56 (290)
310 2hf9_A Probable hydrogenase ni 95.1 0.023 8E-07 54.3 5.7 41 26-66 22-62 (226)
311 2ze6_A Isopentenyl transferase 95.1 0.012 4.3E-07 57.4 3.8 24 43-66 2-25 (253)
312 1kht_A Adenylate kinase; phosp 95.1 0.012 4.2E-07 54.6 3.6 24 43-66 4-27 (192)
313 2yvu_A Probable adenylyl-sulfa 95.1 0.014 4.8E-07 54.0 3.9 26 41-66 12-37 (186)
314 3tqc_A Pantothenate kinase; bi 95.1 0.021 7.2E-07 57.5 5.4 44 23-66 69-116 (321)
315 3t61_A Gluconokinase; PSI-biol 95.1 0.011 3.6E-07 55.7 3.0 25 42-66 18-42 (202)
316 1zuh_A Shikimate kinase; alpha 95.0 0.013 4.5E-07 53.1 3.6 25 42-66 7-31 (168)
317 2qor_A Guanylate kinase; phosp 95.0 0.011 3.8E-07 55.7 3.1 26 41-66 11-36 (204)
318 3ney_A 55 kDa erythrocyte memb 95.0 0.014 4.8E-07 54.0 3.6 26 41-66 18-43 (197)
319 3k1j_A LON protease, ATP-depen 95.0 0.026 8.9E-07 62.9 6.4 44 21-66 41-84 (604)
320 1knq_A Gluconate kinase; ALFA/ 95.0 0.017 5.6E-07 52.9 4.0 25 42-66 8-32 (175)
321 1via_A Shikimate kinase; struc 95.0 0.013 4.5E-07 53.6 3.3 23 44-66 6-28 (175)
322 2z0h_A DTMP kinase, thymidylat 94.9 0.03 1E-06 52.2 5.9 23 44-66 2-24 (197)
323 2q6t_A DNAB replication FORK h 94.9 0.17 5.8E-06 53.9 12.4 53 41-97 199-251 (444)
324 2c95_A Adenylate kinase 1; tra 94.9 0.015 5.2E-07 54.2 3.7 26 41-66 8-33 (196)
325 1tev_A UMP-CMP kinase; ploop, 94.9 0.016 5.6E-07 53.9 3.9 25 42-66 3-27 (196)
326 2wsm_A Hydrogenase expression/ 94.9 0.022 7.5E-07 54.3 4.8 43 24-66 12-54 (221)
327 2iyv_A Shikimate kinase, SK; t 94.8 0.012 4.1E-07 54.3 2.8 23 44-66 4-26 (184)
328 1y63_A LMAJ004144AAA protein; 94.8 0.017 5.7E-07 53.4 3.7 24 42-65 10-33 (184)
329 2xxa_A Signal recognition part 94.8 0.19 6.6E-06 52.9 12.2 54 28-83 77-139 (433)
330 1ukz_A Uridylate kinase; trans 94.8 0.018 6.2E-07 54.1 4.0 26 41-66 14-39 (203)
331 3tr0_A Guanylate kinase, GMP k 94.8 0.017 6E-07 54.3 3.8 25 42-66 7-31 (205)
332 3cm0_A Adenylate kinase; ATP-b 94.8 0.018 6E-07 53.3 3.8 24 43-66 5-28 (186)
333 2plr_A DTMP kinase, probable t 94.8 0.019 6.3E-07 54.4 4.0 24 43-66 5-28 (213)
334 2p5t_B PEZT; postsegregational 94.8 0.022 7.6E-07 55.7 4.6 26 41-66 31-56 (253)
335 2bwj_A Adenylate kinase 5; pho 94.7 0.017 5.8E-07 54.1 3.6 25 42-66 12-36 (199)
336 3a00_A Guanylate kinase, GMP k 94.7 0.014 4.8E-07 54.0 2.9 24 43-66 2-25 (186)
337 3l0o_A Transcription terminati 94.7 0.012 4.2E-07 59.6 2.5 35 32-66 164-199 (427)
338 1e6c_A Shikimate kinase; phosp 94.7 0.015 5.1E-07 53.0 3.0 24 43-66 3-26 (173)
339 1fx0_B ATP synthase beta chain 94.7 0.057 2E-06 56.9 7.6 63 33-97 155-219 (498)
340 2j41_A Guanylate kinase; GMP, 94.7 0.02 6.7E-07 54.0 3.8 25 42-66 6-30 (207)
341 2jaq_A Deoxyguanosine kinase; 94.6 0.018 6.3E-07 54.0 3.6 23 44-66 2-24 (205)
342 1cke_A CK, MSSA, protein (cyti 94.6 0.018 6.2E-07 55.2 3.6 24 43-66 6-29 (227)
343 3fb4_A Adenylate kinase; psych 94.6 0.019 6.3E-07 54.7 3.6 23 44-66 2-24 (216)
344 2pbr_A DTMP kinase, thymidylat 94.6 0.039 1.3E-06 51.3 5.8 23 44-66 2-24 (195)
345 2vli_A Antibiotic resistance p 94.6 0.014 4.7E-07 53.8 2.6 25 42-66 5-29 (183)
346 1ye8_A Protein THEP1, hypothet 94.6 0.02 6.8E-07 52.4 3.6 23 44-66 2-24 (178)
347 3rfe_A Platelet glycoprotein I 94.6 0.033 1.1E-06 47.9 4.7 42 445-488 24-66 (130)
348 1ls1_A Signal recognition part 94.6 0.077 2.6E-06 52.9 8.1 89 42-133 98-189 (295)
349 2pt5_A Shikimate kinase, SK; a 94.6 0.02 7E-07 51.8 3.6 23 44-66 2-24 (168)
350 2cdn_A Adenylate kinase; phosp 94.6 0.02 6.8E-07 53.7 3.6 25 42-66 20-44 (201)
351 1qf9_A UMP/CMP kinase, protein 94.6 0.021 7.3E-07 53.0 3.8 25 42-66 6-30 (194)
352 3rfe_A Platelet glycoprotein I 94.5 0.047 1.6E-06 46.8 5.6 55 458-515 12-68 (130)
353 4akg_A Glutathione S-transfera 94.5 0.086 2.9E-06 67.8 10.1 138 43-194 1268-1432(2695)
354 3dl0_A Adenylate kinase; phosp 94.5 0.02 6.8E-07 54.5 3.5 23 44-66 2-24 (216)
355 2bbw_A Adenylate kinase 4, AK4 94.5 0.021 7.3E-07 55.5 3.8 26 41-66 26-51 (246)
356 1xjc_A MOBB protein homolog; s 94.5 0.03 1E-06 50.3 4.5 26 41-66 3-28 (169)
357 3asz_A Uridine kinase; cytidin 94.5 0.023 8E-07 53.7 3.9 26 41-66 5-30 (211)
358 2qt1_A Nicotinamide riboside k 94.5 0.023 8E-07 53.5 3.9 26 41-66 20-45 (207)
359 2bdt_A BH3686; alpha-beta prot 94.5 0.022 7.7E-07 52.7 3.7 23 43-65 3-25 (189)
360 2wwf_A Thymidilate kinase, put 94.5 0.022 7.7E-07 53.8 3.7 25 42-66 10-34 (212)
361 1pgv_A TMD-1, tropomodulin TMD 94.4 0.041 1.4E-06 50.7 5.3 121 425-553 38-169 (197)
362 1uf9_A TT1252 protein; P-loop, 94.4 0.026 8.7E-07 53.0 4.0 26 40-65 6-31 (203)
363 1lvg_A Guanylate kinase, GMP k 94.4 0.019 6.4E-07 53.8 3.0 25 42-66 4-28 (198)
364 1nn5_A Similar to deoxythymidy 94.4 0.025 8.5E-07 53.7 3.9 26 41-66 8-33 (215)
365 1zu4_A FTSY; GTPase, signal re 94.4 0.064 2.2E-06 54.2 7.0 39 42-83 105-143 (320)
366 3a4m_A L-seryl-tRNA(SEC) kinas 94.4 0.025 8.7E-07 55.5 4.0 25 42-66 4-28 (260)
367 3exa_A TRNA delta(2)-isopenten 94.3 0.027 9.2E-07 55.9 4.0 25 42-66 3-27 (322)
368 1zd8_A GTP:AMP phosphotransfer 94.3 0.023 7.7E-07 54.6 3.5 25 42-66 7-31 (227)
369 1aky_A Adenylate kinase; ATP:A 94.3 0.026 8.8E-07 53.9 3.8 25 42-66 4-28 (220)
370 3upu_A ATP-dependent DNA helic 94.3 0.046 1.6E-06 58.7 6.2 42 25-67 29-70 (459)
371 1uj2_A Uridine-cytidine kinase 94.3 0.027 9.3E-07 55.0 4.0 27 40-66 20-46 (252)
372 4gp7_A Metallophosphoesterase; 94.3 0.023 7.8E-07 51.7 3.2 22 41-62 8-29 (171)
373 1zak_A Adenylate kinase; ATP:A 94.3 0.023 7.8E-07 54.3 3.3 25 42-66 5-29 (222)
374 3a8t_A Adenylate isopentenyltr 94.2 0.027 9.2E-07 56.7 3.8 26 41-66 39-64 (339)
375 2v54_A DTMP kinase, thymidylat 94.2 0.027 9.2E-07 52.9 3.7 25 42-66 4-28 (204)
376 4e22_A Cytidylate kinase; P-lo 94.2 0.028 9.6E-07 54.8 3.9 26 41-66 26-51 (252)
377 1q57_A DNA primase/helicase; d 94.2 0.11 3.8E-06 56.4 9.1 53 42-98 242-294 (503)
378 2grj_A Dephospho-COA kinase; T 94.1 0.028 9.7E-07 52.0 3.5 25 42-66 12-36 (192)
379 1jjv_A Dephospho-COA kinase; P 94.1 0.026 9E-07 53.1 3.4 22 43-64 3-24 (206)
380 2if2_A Dephospho-COA kinase; a 94.1 0.027 9.1E-07 53.0 3.4 22 44-66 3-24 (204)
381 2j37_W Signal recognition part 94.1 0.3 1E-05 52.3 11.9 39 42-83 101-139 (504)
382 1znw_A Guanylate kinase, GMP k 94.1 0.029 1E-06 52.9 3.6 26 41-66 19-44 (207)
383 2r8r_A Sensor protein; KDPD, P 94.1 0.058 2E-06 50.7 5.5 41 43-86 7-47 (228)
384 1htw_A HI0065; nucleotide-bind 94.1 0.037 1.3E-06 49.4 4.0 27 40-66 31-57 (158)
385 3zvl_A Bifunctional polynucleo 94.0 0.097 3.3E-06 55.2 7.8 27 40-66 256-282 (416)
386 3cmu_A Protein RECA, recombina 94.0 0.13 4.3E-06 64.0 9.8 86 41-134 382-471 (2050)
387 2qmh_A HPR kinase/phosphorylas 94.0 0.03 1E-06 51.4 3.3 25 42-66 34-58 (205)
388 2jeo_A Uridine-cytidine kinase 94.0 0.036 1.2E-06 53.8 4.2 27 40-66 23-49 (245)
389 3r20_A Cytidylate kinase; stru 94.0 0.031 1.1E-06 53.3 3.6 25 42-66 9-33 (233)
390 1s96_A Guanylate kinase, GMP k 94.0 0.033 1.1E-06 52.8 3.7 26 41-66 15-40 (219)
391 4eaq_A DTMP kinase, thymidylat 94.0 0.06 2E-06 51.5 5.6 26 41-66 25-50 (229)
392 1z6g_A Guanylate kinase; struc 93.9 0.028 9.4E-07 53.5 3.1 26 41-66 22-47 (218)
393 2dr3_A UPF0273 protein PH0284; 93.9 0.041 1.4E-06 53.4 4.5 40 41-83 22-61 (247)
394 2yhs_A FTSY, cell division pro 93.9 0.21 7.1E-06 53.0 9.9 26 41-66 292-317 (503)
395 3d3q_A TRNA delta(2)-isopenten 93.9 0.034 1.2E-06 56.1 3.8 24 43-66 8-31 (340)
396 2pez_A Bifunctional 3'-phospho 93.9 0.04 1.4E-06 50.5 4.0 25 42-66 5-29 (179)
397 1rj9_A FTSY, signal recognitio 93.9 0.049 1.7E-06 54.5 4.9 26 41-66 101-126 (304)
398 3foz_A TRNA delta(2)-isopenten 93.9 0.036 1.2E-06 54.9 3.8 25 42-66 10-34 (316)
399 3crm_A TRNA delta(2)-isopenten 93.9 0.034 1.2E-06 55.8 3.7 24 43-66 6-29 (323)
400 3f9v_A Minichromosome maintena 93.8 0.017 5.9E-07 63.9 1.7 46 21-66 295-351 (595)
401 3end_A Light-independent proto 93.8 0.059 2E-06 54.4 5.5 43 40-85 39-81 (307)
402 2qe7_A ATP synthase subunit al 93.8 0.12 4.2E-06 54.5 7.9 97 33-134 152-264 (502)
403 1m7g_A Adenylylsulfate kinase; 93.8 0.041 1.4E-06 52.0 4.1 27 40-66 23-49 (211)
404 1e4v_A Adenylate kinase; trans 93.8 0.035 1.2E-06 52.6 3.5 23 44-66 2-24 (214)
405 3aez_A Pantothenate kinase; tr 93.7 0.04 1.4E-06 55.4 4.0 27 40-66 88-114 (312)
406 2xb4_A Adenylate kinase; ATP-b 93.7 0.037 1.3E-06 52.8 3.6 23 44-66 2-24 (223)
407 1g8f_A Sulfate adenylyltransfe 93.7 0.062 2.1E-06 57.7 5.6 45 22-66 373-419 (511)
408 1gtv_A TMK, thymidylate kinase 93.7 0.021 7.1E-07 54.2 1.7 23 44-66 2-24 (214)
409 3be4_A Adenylate kinase; malar 93.7 0.037 1.3E-06 52.6 3.5 24 43-66 6-29 (217)
410 1ak2_A Adenylate kinase isoenz 93.7 0.043 1.5E-06 52.8 4.0 25 42-66 16-40 (233)
411 3b85_A Phosphate starvation-in 93.7 0.05 1.7E-06 51.1 4.3 23 43-65 23-45 (208)
412 1u0j_A DNA replication protein 93.6 0.084 2.9E-06 51.1 5.9 36 31-66 91-128 (267)
413 3ake_A Cytidylate kinase; CMP 93.6 0.039 1.3E-06 51.9 3.6 23 44-66 4-26 (208)
414 3gqb_B V-type ATP synthase bet 93.6 0.038 1.3E-06 57.6 3.6 95 40-134 145-261 (464)
415 3fwy_A Light-independent proto 93.6 0.067 2.3E-06 53.8 5.4 41 40-83 46-86 (314)
416 4edh_A DTMP kinase, thymidylat 93.6 0.12 4E-06 48.8 6.8 25 42-66 6-30 (213)
417 3p32_A Probable GTPase RV1496/ 93.6 0.13 4.5E-06 52.9 7.8 27 40-66 77-103 (355)
418 3nwj_A ATSK2; P loop, shikimat 93.6 0.036 1.2E-06 53.7 3.2 25 42-66 48-72 (250)
419 4gzl_A RAS-related C3 botulinu 93.5 0.043 1.5E-06 51.5 3.6 43 24-66 12-54 (204)
420 1np6_A Molybdopterin-guanine d 93.5 0.077 2.6E-06 48.1 5.1 25 42-66 6-30 (174)
421 2orw_A Thymidine kinase; TMTK, 93.5 0.076 2.6E-06 48.8 5.1 24 43-66 4-27 (184)
422 2ck3_A ATP synthase subunit al 93.5 0.084 2.9E-06 55.9 5.9 101 34-134 153-272 (510)
423 3cmw_A Protein RECA, recombina 93.4 0.1 3.6E-06 63.8 7.5 86 41-134 382-471 (1706)
424 2c61_A A-type ATP synthase non 93.4 0.086 2.9E-06 55.4 5.9 100 34-133 143-258 (469)
425 2r9v_A ATP synthase subunit al 93.4 0.075 2.6E-06 56.1 5.4 96 34-134 166-277 (515)
426 1vht_A Dephospho-COA kinase; s 93.3 0.056 1.9E-06 51.4 4.0 23 42-64 4-26 (218)
427 3oaa_A ATP synthase subunit al 93.3 0.11 3.7E-06 54.8 6.4 91 40-134 160-264 (513)
428 2ehv_A Hypothetical protein PH 93.3 0.047 1.6E-06 53.1 3.5 25 41-65 29-53 (251)
429 1a7j_A Phosphoribulokinase; tr 93.2 0.029 9.8E-07 56.0 1.8 26 41-66 4-29 (290)
430 3lnc_A Guanylate kinase, GMP k 93.1 0.035 1.2E-06 53.3 2.4 25 42-66 27-52 (231)
431 1sq5_A Pantothenate kinase; P- 93.1 0.099 3.4E-06 52.6 5.8 27 40-66 78-104 (308)
432 3vr4_D V-type sodium ATPase su 93.1 0.054 1.9E-06 56.5 3.8 93 41-133 150-257 (465)
433 2f6r_A COA synthase, bifunctio 93.1 0.055 1.9E-06 53.7 3.8 23 41-63 74-96 (281)
434 2i3b_A HCR-ntpase, human cance 93.1 0.046 1.6E-06 50.5 3.0 24 44-67 3-26 (189)
435 2f1r_A Molybdopterin-guanine d 93.1 0.034 1.2E-06 50.3 2.0 24 43-66 3-26 (171)
436 2eyu_A Twitching motility prot 93.0 0.065 2.2E-06 52.4 4.1 27 40-66 23-49 (261)
437 3io3_A DEHA2D07832P; chaperone 93.0 0.11 3.8E-06 53.0 6.1 47 39-86 15-61 (348)
438 3tif_A Uncharacterized ABC tra 93.0 0.05 1.7E-06 52.3 3.2 26 41-66 30-55 (235)
439 3mfy_A V-type ATP synthase alp 93.0 0.21 7.2E-06 53.2 8.0 58 33-95 217-276 (588)
440 1cr0_A DNA primase/helicase; R 93.0 0.13 4.6E-06 51.4 6.5 53 40-96 33-85 (296)
441 3iqw_A Tail-anchored protein t 93.0 0.13 4.3E-06 52.3 6.3 47 39-88 13-59 (334)
442 3vr4_A V-type sodium ATPase ca 92.9 0.1 3.6E-06 55.7 5.7 58 33-95 222-281 (600)
443 1nlf_A Regulatory protein REPA 92.9 0.095 3.2E-06 52.0 5.2 26 41-66 29-54 (279)
444 3b9q_A Chloroplast SRP recepto 92.9 0.076 2.6E-06 53.1 4.4 25 42-66 100-124 (302)
445 1p9r_A General secretion pathw 92.9 0.15 5.2E-06 53.4 6.9 27 40-66 165-191 (418)
446 2onk_A Molybdate/tungstate ABC 92.9 0.059 2E-06 51.9 3.5 26 40-66 23-48 (240)
447 3eph_A TRNA isopentenyltransfe 92.8 0.066 2.2E-06 55.2 3.9 24 43-66 3-26 (409)
448 3cmw_A Protein RECA, recombina 92.7 0.15 5.2E-06 62.5 7.5 85 41-133 1430-1518(1706)
449 1pgv_A TMD-1, tropomodulin TMD 92.7 0.055 1.9E-06 49.9 2.8 113 400-513 38-168 (197)
450 2j9r_A Thymidine kinase; TK1, 92.6 0.077 2.6E-06 49.4 3.7 112 41-165 27-140 (214)
451 1ltq_A Polynucleotide kinase; 92.6 0.071 2.4E-06 53.6 3.8 24 43-66 3-26 (301)
452 2pcj_A ABC transporter, lipopr 92.5 0.058 2E-06 51.4 2.9 26 41-66 29-54 (224)
453 2cbz_A Multidrug resistance-as 92.5 0.064 2.2E-06 51.6 3.2 26 41-66 30-55 (237)
454 1svm_A Large T antigen; AAA+ f 92.5 0.13 4.6E-06 52.9 5.8 27 40-66 167-193 (377)
455 1fx0_A ATP synthase alpha chai 92.5 0.12 4.2E-06 54.5 5.5 87 40-133 161-264 (507)
456 3tqf_A HPR(Ser) kinase; transf 92.4 0.085 2.9E-06 47.0 3.6 23 43-65 17-39 (181)
457 2v9p_A Replication protein E1; 92.4 0.075 2.6E-06 52.9 3.7 27 40-66 124-150 (305)
458 1b0u_A Histidine permease; ABC 92.3 0.068 2.3E-06 52.3 3.2 27 40-66 30-56 (262)
459 2ged_A SR-beta, signal recogni 92.3 0.14 4.7E-06 47.3 5.2 26 41-66 47-72 (193)
460 1zj6_A ADP-ribosylation factor 92.3 0.15 5E-06 46.9 5.4 35 30-65 5-39 (187)
461 3llm_A ATP-dependent RNA helic 92.3 0.31 1E-05 46.8 7.8 24 42-65 76-99 (235)
462 3cr8_A Sulfate adenylyltranfer 92.3 0.11 3.8E-06 56.5 5.1 44 23-66 348-393 (552)
463 3lv8_A DTMP kinase, thymidylat 92.3 0.16 5.4E-06 48.6 5.6 25 42-66 27-51 (236)
464 4tmk_A Protein (thymidylate ki 92.2 0.17 5.9E-06 47.5 5.7 52 43-96 4-55 (213)
465 1yrb_A ATP(GTP)binding protein 92.2 0.17 5.8E-06 49.5 6.0 26 41-66 13-38 (262)
466 1q3t_A Cytidylate kinase; nucl 92.2 0.094 3.2E-06 50.5 4.0 26 41-66 15-40 (236)
467 2og2_A Putative signal recogni 92.2 0.11 3.6E-06 53.3 4.5 25 42-66 157-181 (359)
468 1mv5_A LMRA, multidrug resista 92.1 0.079 2.7E-06 51.2 3.4 27 40-66 26-52 (243)
469 2olj_A Amino acid ABC transpor 92.1 0.075 2.6E-06 51.9 3.2 26 41-66 49-74 (263)
470 2zu0_C Probable ATP-dependent 92.1 0.089 3E-06 51.6 3.7 26 40-65 44-69 (267)
471 3gfo_A Cobalt import ATP-bindi 92.1 0.071 2.4E-06 52.5 2.9 26 41-66 33-58 (275)
472 3hjn_A DTMP kinase, thymidylat 92.1 0.18 6E-06 46.9 5.5 50 45-97 3-52 (197)
473 1oix_A RAS-related protein RAB 92.1 0.085 2.9E-06 48.8 3.4 24 43-66 30-53 (191)
474 2dyk_A GTP-binding protein; GT 92.0 0.095 3.2E-06 46.6 3.5 24 43-66 2-25 (161)
475 2d2e_A SUFC protein; ABC-ATPas 91.9 0.091 3.1E-06 51.0 3.6 25 41-65 28-52 (250)
476 1sgw_A Putative ABC transporte 91.9 0.066 2.3E-06 50.5 2.4 26 41-66 34-59 (214)
477 3ld9_A DTMP kinase, thymidylat 91.9 0.12 4E-06 48.9 4.2 27 40-66 19-45 (223)
478 4g1u_C Hemin import ATP-bindin 91.9 0.078 2.7E-06 52.0 3.0 26 41-66 36-61 (266)
479 1vpl_A ABC transporter, ATP-bi 91.9 0.083 2.8E-06 51.4 3.2 26 41-66 40-65 (256)
480 2ff7_A Alpha-hemolysin translo 91.9 0.08 2.7E-06 51.3 3.0 26 41-66 34-59 (247)
481 1ji0_A ABC transporter; ATP bi 91.9 0.081 2.8E-06 51.0 3.0 26 41-66 31-56 (240)
482 3v9p_A DTMP kinase, thymidylat 91.8 0.12 4.1E-06 49.1 4.2 26 42-67 25-50 (227)
483 2ghi_A Transport protein; mult 91.8 0.085 2.9E-06 51.5 3.2 27 40-66 44-70 (260)
484 2ocp_A DGK, deoxyguanosine kin 91.8 0.1 3.5E-06 50.4 3.8 25 42-66 2-26 (241)
485 2pze_A Cystic fibrosis transme 91.8 0.083 2.8E-06 50.5 3.0 26 41-66 33-58 (229)
486 1tq4_A IIGP1, interferon-induc 91.8 0.14 4.7E-06 53.5 4.8 26 41-66 68-93 (413)
487 2wji_A Ferrous iron transport 91.8 0.11 3.6E-06 46.8 3.6 23 43-65 4-26 (165)
488 1cp2_A CP2, nitrogenase iron p 91.8 0.18 6.1E-06 49.6 5.5 39 43-84 2-40 (269)
489 2ixe_A Antigen peptide transpo 91.8 0.087 3E-06 51.8 3.2 27 40-66 43-69 (271)
490 1g6h_A High-affinity branched- 91.7 0.084 2.9E-06 51.5 3.0 26 41-66 32-57 (257)
491 2zej_A Dardarin, leucine-rich 91.7 0.072 2.5E-06 48.9 2.4 22 44-65 4-25 (184)
492 2f9l_A RAB11B, member RAS onco 91.7 0.1 3.5E-06 48.6 3.5 24 43-66 6-29 (199)
493 4b3f_X DNA-binding protein smu 91.6 0.13 4.3E-06 58.0 4.8 37 28-66 193-229 (646)
494 2zts_A Putative uncharacterize 91.6 0.13 4.5E-06 49.8 4.3 50 41-94 29-78 (251)
495 3fvq_A Fe(3+) IONS import ATP- 91.6 0.1 3.6E-06 53.2 3.6 26 41-66 29-54 (359)
496 2yz2_A Putative ABC transporte 91.5 0.094 3.2E-06 51.4 3.2 26 41-66 32-57 (266)
497 2gks_A Bifunctional SAT/APS ki 91.5 0.21 7E-06 54.5 6.1 46 21-66 349-396 (546)
498 2qi9_C Vitamin B12 import ATP- 91.4 0.094 3.2E-06 50.8 3.0 26 41-66 25-50 (249)
499 1moz_A ARL1, ADP-ribosylation 91.4 0.12 4E-06 47.3 3.5 35 31-65 6-41 (183)
500 3kta_A Chromosome segregation 91.4 0.11 3.9E-06 47.5 3.4 24 43-66 27-50 (182)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=9.7e-38 Score=348.25 Aligned_cols=311 Identities=14% Similarity=0.152 Sum_probs=242.1
Q ss_pred cchHHHHHHHHHHhhcC---CceEEEEEcCCCCcHHHHHHHHHh--hhhhccCCCCEEEEEEecCCC--CHHHHHHHHHH
Q 039535 24 VGLQSQLEQVWRCLIEE---SAGIIGLYGMGGVGKTTLLIHINN--KFLESRTNFDFVIWVVVSKDP--RLEKIQEDIGK 96 (769)
Q Consensus 24 vgR~~~~~~l~~~l~~~---~~~~v~I~G~~GiGKTtLa~~~~~--~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~l~~ 96 (769)
|||++++++|.++|..+ ..++|+|+|+||+||||||+++++ +. +...+|+.++|+++++.. +...+++.++.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHHHH
Confidence 59999999999999753 578999999999999999999997 22 457899999999998875 78999999999
Q ss_pred HcCCCCC-----CCCCccHHHHHHHHHHHhccc-eEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhhhcccC
Q 039535 97 RIGLVDD-----SWKSKSVEEKALDIFRSLREK-RIVLLLDDIWERLDLTKVGVPLPGPKNTTSKVVFTTRFFDVCGSME 170 (769)
Q Consensus 97 ~l~~~~~-----~~~~~~~~~~~~~l~~~l~~~-~~llvlDd~~~~~~~~~~~~~l~~~~~~~~~iiittr~~~~~~~~~ 170 (769)
+++.... .....+.+.+...+.+.+.++ |+||||||+|+..++ .+. ...|++||||||+..++...+
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~------~~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA------QELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH------HHTTCEEEEEESBGGGGGGCC
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc------ccCCCEEEEEcCCHHHHHHcC
Confidence 9986532 112335567788999999996 999999999987654 221 125899999999998877665
Q ss_pred -CCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHhcCCCCHHHHHHHHHHHhccc
Q 039535 171 -AHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAMASKKTAEEWRHAIEELGRSA 249 (769)
Q Consensus 171 -~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~~~~~l~~l~~~~ 249 (769)
....|++++|+.++++++|.+.++... ..+..++++.+|+++|+|+|+|+..+|+.++.. + .+|...+.. ..
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~---~l 355 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNN---KL 355 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHH---HH
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHH---Hh
Confidence 346799999999999999999976543 236677889999999999999999999998763 3 233333332 21
Q ss_pred CCCCCCccchhhHHHhhhcCCCccccchhhc-----------eecccCCCccccHHHHHHHHhhc--CccccCc-ccccc
Q 039535 250 SEFPGLGKEVYPVLKFSYDSLPNETIRSCFL-----------YCCLYPEDYGILKWDLIDCWIGE--GFLEESN-RFGAE 315 (769)
Q Consensus 250 ~~~~~~~~~i~~~l~~~~~~L~~~~~~~~~~-----------~~~~~p~~~~i~~~~l~~~w~~~--g~~~~~~-~~~~~ 315 (769)
.... ...+..++.+||+.|+. +++.||+ |+++||+++.|+ ++.|+++ |++.... ....+
T Consensus 356 ~~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 356 ESRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hccc--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 1111 23678888999999988 8899998 999999999998 7899999 8888754 34445
Q ss_pred cchhhhHHHHhhhcceeeec---CCeEEEehhHHHHHHHHHhhcc
Q 039535 316 NRGYYIVGTLVHTCLLEEIE---DDKVKMHDVVRDMALWIACETE 357 (769)
Q Consensus 316 ~~~~~~l~~L~~~~ll~~~~---~~~~~~h~lv~~~~~~~~~~~~ 357 (769)
+.+. +|++|++++|++... ..+|.||+++|+++++++.+++
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 5555 999999999998763 3579999999999998776543
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.98 E-value=8e-32 Score=334.26 Aligned_cols=316 Identities=19% Similarity=0.241 Sum_probs=251.8
Q ss_pred ccCCCCccccchHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhhhhccC-CCCEEEEEEecCCCC--HHH
Q 039535 15 DERPTERTLVGLQSQLEQVWRCLIE--ESAGIIGLYGMGGVGKTTLLIHINNKFLESRT-NFDFVIWVVVSKDPR--LEK 89 (769)
Q Consensus 15 ~~~~~~~~~vgR~~~~~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-~~~~~~w~~~~~~~~--~~~ 89 (769)
..|+.+..||||++++++|.++|.. ++.++|+|+|+||+||||||++++++...... .++.++|+++++... ...
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 3555667899999999999999963 56789999999999999999999998633344 456888999988543 445
Q ss_pred HHHHHHHHcCCCCC--CCCCccHHHHHHHHHHHhccc--eEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhh
Q 039535 90 IQEDIGKRIGLVDD--SWKSKSVEEKALDIFRSLREK--RIVLLLDDIWERLDLTKVGVPLPGPKNTTSKVVFTTRFFDV 165 (769)
Q Consensus 90 ~~~~l~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~--~~llvlDd~~~~~~~~~~~~~l~~~~~~~~~iiittr~~~~ 165 (769)
.+..++..+..... .......+.....+...+.++ |+||||||+|+..+++.+ .++++||+|||++.+
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~--------~~~~~ilvTtR~~~~ 269 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF--------DNQCQILLTTRDKSV 269 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT--------CSSCEEEEEESSTTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh--------cCCCEEEEEcCCHHH
Confidence 56677777765432 224567788888999999877 999999999987666543 457899999999988
Q ss_pred hcc-cCCCceEEeec-CCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHhcCCCCHHHHHHHHH
Q 039535 166 CGS-MEAHRTFEVAC-LSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAMASKKTAEEWRHAIE 243 (769)
Q Consensus 166 ~~~-~~~~~~~~l~~-l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~~~~~l~ 243 (769)
+.. ......+.+.+ |+++|++++|...++... +...+.+.+|+++|+|+|+||.++|++++... ..|..+++
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~ 343 (1249)
T 3sfz_A 270 TDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLR 343 (1249)
T ss_dssp TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHH
T ss_pred HHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHH
Confidence 743 45567899996 999999999999885443 22345688999999999999999999998743 46777777
Q ss_pred HHhcccCCCC-----CCccchhhHHHhhhcCCCccccchhhceecccCCCccccHHHHHHHHhhcCccccCcccccccch
Q 039535 244 ELGRSASEFP-----GLGKEVYPVLKFSYDSLPNETIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEESNRFGAENRG 318 (769)
Q Consensus 244 ~l~~~~~~~~-----~~~~~i~~~l~~~~~~L~~~~~~~~~~~~~~~p~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~ 318 (769)
.+........ ...+.+..++.+||+.|++ ..|.||+++++||+++.|+.+.++..|.++ ++.+
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~ 411 (1249)
T 3sfz_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEV 411 (1249)
T ss_dssp HHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHH
T ss_pred HHhhhhhhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHH
Confidence 7766543221 1124689999999999999 899999999999999999999999999554 3556
Q ss_pred hhhHHHHhhhcceeeecCC---eEEEehhHHHHHHHHHhhc
Q 039535 319 YYIVGTLVHTCLLEEIEDD---KVKMHDVVRDMALWIACET 356 (769)
Q Consensus 319 ~~~l~~L~~~~ll~~~~~~---~~~~h~lv~~~~~~~~~~~ 356 (769)
+++++.|++++|++....+ .|.||+++|++++....++
T Consensus 412 ~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 412 EDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 7889999999999887544 4999999999999886654
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.98 E-value=9.7e-33 Score=309.75 Aligned_cols=286 Identities=17% Similarity=0.246 Sum_probs=222.7
Q ss_pred ccccchHHHHHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCE-EEEEEecCCCCHHHHHHHHHHHc
Q 039535 21 RTLVGLQSQLEQVWRCLIE-ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDF-VIWVVVSKDPRLEKIQEDIGKRI 98 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~l~~~l 98 (769)
+..|||++++++|.+++.. ++.++|+|+||||+||||||++++++. +...+|+. ++|+++++..+...++..+...+
T Consensus 128 k~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3459999999999999976 567899999999999999999999865 34566774 99999999888888888877754
Q ss_pred CCCCC----CC-----CCccHHHHHHHHHHHh---ccceEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhhh
Q 039535 99 GLVDD----SW-----KSKSVEEKALDIFRSL---REKRIVLLLDDIWERLDLTKVGVPLPGPKNTTSKVVFTTRFFDVC 166 (769)
Q Consensus 99 ~~~~~----~~-----~~~~~~~~~~~l~~~l---~~~~~llvlDd~~~~~~~~~~~~~l~~~~~~~~~iiittr~~~~~ 166 (769)
+...+ .. .+.+.+.....+.+.+ .++|+||||||+|+...|+.+. .|++||||||+..++
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~--------pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN--------LSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH--------SSCCEEEECSCSHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC--------CCeEEEEeccChHHH
Confidence 32110 00 1123344555566654 6799999999999977776542 478999999998876
Q ss_pred cccCCCceEEee------cCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHhcCCC-CHHHHH
Q 039535 167 GSMEAHRTFEVA------CLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAMASKK-TAEEWR 239 (769)
Q Consensus 167 ~~~~~~~~~~l~------~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~-~~~~~~ 239 (769)
........+.++ +|+.+|++++|.+.++... .++..+ .|+|+|+||..+|+.++... +.+.|.
T Consensus 279 ~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~-------eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~ 348 (1221)
T 1vt4_I 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP-------QDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWK 348 (1221)
T ss_dssp HHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCT-------TTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHH
T ss_pred HhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCH-------HHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHh
Confidence 433322346666 8999999999999864321 122333 39999999999999998753 567776
Q ss_pred HHHHHHhcccCCCCCCccchhhHHHhhhcCCCcccc-chhhceecccCCCccccHHHHHHHHhhcCccccCcccccccch
Q 039535 240 HAIEELGRSASEFPGLGKEVYPVLKFSYDSLPNETI-RSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEESNRFGAENRG 318 (769)
Q Consensus 240 ~~l~~l~~~~~~~~~~~~~i~~~l~~~~~~L~~~~~-~~~~~~~~~~p~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~ 318 (769)
.. ....+..++..||+.|++ .. |.||+++++||++..|+.+.++..|+++| ++.+
T Consensus 349 ~~-------------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedA 404 (1221)
T 1vt4_I 349 HV-------------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDV 404 (1221)
T ss_dssp HC-------------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHH
T ss_pred cC-------------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHH
Confidence 52 135899999999999999 77 99999999999999999999999998876 1346
Q ss_pred hhhHHHHhhhcceeee-cCCeEEEehhHHHHH
Q 039535 319 YYIVGTLVHTCLLEEI-EDDKVKMHDVVRDMA 349 (769)
Q Consensus 319 ~~~l~~L~~~~ll~~~-~~~~~~~h~lv~~~~ 349 (769)
..+|++|+++||++.. ....|+||+++++++
T Consensus 405 e~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 7789999999999885 456899999998854
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=1.9e-30 Score=294.46 Aligned_cols=311 Identities=20% Similarity=0.250 Sum_probs=235.9
Q ss_pred ccCCCCccccchHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhhhhc-cCCC-CEEEEEEecCCCC--HH
Q 039535 15 DERPTERTLVGLQSQLEQVWRCLIE--ESAGIIGLYGMGGVGKTTLLIHINNKFLES-RTNF-DFVIWVVVSKDPR--LE 88 (769)
Q Consensus 15 ~~~~~~~~~vgR~~~~~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~-~~~~w~~~~~~~~--~~ 88 (769)
..|+.+..||||++++++|.+++.. ++.++|+|+|+||+||||||.+++++. +. ...| +.++|++++.... +.
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~~~~~~~ 196 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQDKSGLL 196 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESCCHHHHH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCCchHHHH
Confidence 3466778899999999999999973 467899999999999999999999875 32 4556 5899999877532 22
Q ss_pred HHHHHHHHHcCCC--CCCCCCccHHHHHHHHHHHhcc--ceEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchh
Q 039535 89 KIQEDIGKRIGLV--DDSWKSKSVEEKALDIFRSLRE--KRIVLLLDDIWERLDLTKVGVPLPGPKNTTSKVVFTTRFFD 164 (769)
Q Consensus 89 ~~~~~l~~~l~~~--~~~~~~~~~~~~~~~l~~~l~~--~~~llvlDd~~~~~~~~~~~~~l~~~~~~~~~iiittr~~~ 164 (769)
..+..++..++.. .......+.+.....+...+.+ +++||||||+|+...++.+ ..+++||+|||+..
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l--------~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF--------DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT--------CSSCEEEEEESCGG
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh--------cCCCeEEEECCCcH
Confidence 3333344455421 1122445677777788887765 7899999999876555432 35789999999988
Q ss_pred hhcccCCCceEEee---cCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHhcCCCCHHHHHHH
Q 039535 165 VCGSMEAHRTFEVA---CLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAMASKKTAEEWRHA 241 (769)
Q Consensus 165 ~~~~~~~~~~~~l~---~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~~~~~ 241 (769)
+..... ...+.+. +|+.+|+.++|...++... ....+.+..|++.|+|+|+|+..+|+.++... ..|...
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~ 341 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYY 341 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHH
T ss_pred HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHH
Confidence 765543 3456654 8999999999999986532 11235678999999999999999999998743 357777
Q ss_pred HHHHhcccCC-----CCCCccchhhHHHhhhcCCCccccchhhceecccCCCccccHHHHHHHHhhcCccccCccccccc
Q 039535 242 IEELGRSASE-----FPGLGKEVYPVLKFSYDSLPNETIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEESNRFGAEN 316 (769)
Q Consensus 242 l~~l~~~~~~-----~~~~~~~i~~~l~~~~~~L~~~~~~~~~~~~~~~p~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~ 316 (769)
++.+...... ......++..++..+|+.|++ ..+.||+++++||.+..|+...+...|.++ .+
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~ 409 (591)
T 1z6t_A 342 LKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TE 409 (591)
T ss_dssp HHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HH
T ss_pred HHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC-----------HH
Confidence 7777654322 112235789999999999999 799999999999999999999999999543 23
Q ss_pred chhhhHHHHhhhcceeeec---CCeEEEehhHHHHHHHHH
Q 039535 317 RGYYIVGTLVHTCLLEEIE---DDKVKMHDVVRDMALWIA 353 (769)
Q Consensus 317 ~~~~~l~~L~~~~ll~~~~---~~~~~~h~lv~~~~~~~~ 353 (769)
.+..++..|+++||+.... ...|.||++++++++...
T Consensus 410 ~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 410 EVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 4577899999999998652 237999999999998773
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=5.2e-25 Score=241.96 Aligned_cols=350 Identities=20% Similarity=0.248 Sum_probs=240.4
Q ss_pred cceEEEEcCCccccCCCCCCCcceeEEEEeecccccc--CCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeec
Q 039535 360 KINFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVL--SEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISN 437 (769)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~ 437 (769)
....+.+.+.++..+|. -.++++.|++++|.+..+ ..+.++++|++|++++|.....+++..|.++++|++|++++
T Consensus 11 ~~~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 11 IGYNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp ETTEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred EccccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 44567888888999988 337999999999999654 45899999999999999855578777899999999999999
Q ss_pred cCccccccC-CccccCCCCCCEEeccCCCCCc-cchh--hhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccC
Q 039535 438 IGYFNVLKL-PLGMSKLGSLELLDISHSSIEE-LPEE--LKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATG 513 (769)
Q Consensus 438 ~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~-lp~~--~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~ 513 (769)
| .+..+ |..+..+++|++|++++|.++. +|.. +..+++|++|++++|......|..++.++++|++|++++|.
T Consensus 89 n---~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 89 N---QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp C---TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred C---ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 9 55554 6788999999999999999984 4544 88999999999999984444466557899999999999998
Q ss_pred CCccccccccccccCCccchhhhhhcC--CCceEEEEEeCChhhHHHH------HhcccccccceeEEEeccCCCccccc
Q 039535 514 YDRFHEASEDSVLFGGGEVLIQELLGL--KYLEVLELTLGSYHALQIL------LSSNKLKSCIRSLLLFGFRGTKYFID 585 (769)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~L~~l~l~~~~~~~~~~l------~~~~~~~~~l~~L~l~~~~~~~~~~~ 585 (769)
+.... +..+..+ .+|+.++++.+........ ........+|+.|.++++......+
T Consensus 166 l~~~~---------------~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~- 229 (455)
T 3v47_A 166 VKSIC---------------EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA- 229 (455)
T ss_dssp BSCCC---------------TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHH-
T ss_pred ccccC---------------hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccch-
Confidence 76532 1222222 2344444433332221110 0000011234444444433222111
Q ss_pred cccccc---cccccceeeccc-------------------------cCcceEeeeeeccccccCCC-ccccccceEeecC
Q 039535 586 ATAFAD---LKHLNELQIHDC-------------------------RGLEELKIDYTEIAQKRREP-FVFRSLRRVTMVS 636 (769)
Q Consensus 586 ~~~l~~---~~~L~~L~l~~~-------------------------~~l~~l~l~~~~~~~~~~~~-~~~~~L~~L~L~~ 636 (769)
..+.. .++|+.|+++++ +.|+.+++++|.+.+..+.. ..+++|++|++++
T Consensus 230 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 308 (455)
T 3v47_A 230 -KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308 (455)
T ss_dssp -HHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTT
T ss_pred -hhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCC
Confidence 01111 133444444433 57888888888887765543 6688999999999
Q ss_pred cccccccc--cccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCcccccccccccccccc-cCCCCCCCCcc
Q 039535 637 CHKLKDLT--FLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALKSI-YWKPLPFTYLK 713 (769)
Q Consensus 637 ~~~l~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~L~ 713 (769)
|. ++.++ .+..+++|++|+|++|.. +.+. +. .+..+++|++|++++| .++.+ +.....+++|+
T Consensus 309 n~-l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~--------~~---~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 309 NE-INKIDDNAFWGLTHLLKLNLSQNFL-GSID--------SR---MFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLK 374 (455)
T ss_dssp SC-CCEECTTTTTTCTTCCEEECCSSCC-CEEC--------GG---GGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCC
T ss_pred Cc-ccccChhHhcCcccCCEEECCCCcc-CCcC--------hh---HhcCcccCCEEECCCC-cccccChhhcccccccc
Confidence 95 55543 477889999999998743 2221 11 3456779999999996 55655 55666789999
Q ss_pred eEeecCCccCCCcCCCC--CcccccceEEeccccc
Q 039535 714 EMVVNGCDQLKKLPLDS--SCAEERKFVIRGEAHW 746 (769)
Q Consensus 714 ~L~i~~C~~L~~lp~~~--~~~~l~~~~i~~~~~~ 746 (769)
+|++++| +++.+|... ..++|+.+.+++++=-
T Consensus 375 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 375 ELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp EEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EEECCCC-ccccCCHhHhccCCcccEEEccCCCcc
Confidence 9999886 788888754 3388999998865543
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=3.6e-25 Score=233.83 Aligned_cols=306 Identities=15% Similarity=0.173 Sum_probs=211.4
Q ss_pred CCCCCcceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCC
Q 039535 376 DVKGWENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGS 455 (769)
Q Consensus 376 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~ 455 (769)
....+++++.|.+.++.+..++.+..+++|++|++++|. +..++. +..+++|++|++++| .+..++ .+..+++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~-i~~~~~--~~~l~~L~~L~L~~n---~i~~~~-~~~~l~~ 111 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQ-ITDISP--LSNLVKLTNLYIGTN---KITDIS-ALQNLTN 111 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSS---CCCCCG-GGTTCTT
T ss_pred cchhcccccEEEEeCCccccchhhhhcCCccEEEccCCc-cccchh--hhcCCcCCEEEccCC---cccCch-HHcCCCc
Confidence 334557788888888888777778888888888888886 666665 788888888888888 555554 5778888
Q ss_pred CCEEeccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhh
Q 039535 456 LELLDISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQ 535 (769)
Q Consensus 456 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (769)
|++|++++|.++.++. +..+++|++|++++|.....++. +..+++|++|++++|....+ .
T Consensus 112 L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~-----------------~ 171 (347)
T 4fmz_A 112 LRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDV-----------------T 171 (347)
T ss_dssp CSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCC-----------------G
T ss_pred CCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCc-----------------h
Confidence 8888888888887766 77888888888888876666665 78888888888888876632 1
Q ss_pred hhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccccceeeccccCcceEeeeeec
Q 039535 536 ELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGLEELKIDYTE 615 (769)
Q Consensus 536 ~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~l~~~~ 615 (769)
.+..+++|+.|+++.+.+..+.. .....+++.|.+.++...... .+..+++|++|++++| .
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~----~~~~~~~L~~L~l~~n-----------~ 232 (347)
T 4fmz_A 172 PIANLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQITDIT----PVANMTRLNSLKIGNN-----------K 232 (347)
T ss_dssp GGGGCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCCG----GGGGCTTCCEEECCSS-----------C
T ss_pred hhccCCCCCEEEccCCccccccc----ccCCCccceeecccCCCCCCc----hhhcCCcCCEEEccCC-----------c
Confidence 26778888888888776554433 222356777777665443332 2455566666666554 3
Q ss_pred cccccCCCccccccceEeecCcccccccccccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCccccccccc
Q 039535 616 IAQKRREPFVFRSLRRVTMVSCHKLKDLTFLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSY 695 (769)
Q Consensus 616 ~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 695 (769)
+.+..+ ...+++|++|++++| .++.++.+..+++|+.|++++|. +++ + ..+..+++|+.|++++
T Consensus 233 l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~---------~----~~~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 233 ITDLSP-LANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ-ISD---------I----SVLNNLSQLNSLFLNN 296 (347)
T ss_dssp CCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCC---------C----GGGGGCTTCSEEECCS
T ss_pred cCCCcc-hhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCc-cCC---------C----hhhcCCCCCCEEECcC
Confidence 333222 346778888888888 46667777788888888888763 222 1 1244667888888888
Q ss_pred ccccccccCCCCCCCCcceEeecCCccCCCcCCCCCcccccceEEeccc
Q 039535 696 LLALKSIYWKPLPFTYLKEMVVNGCDQLKKLPLDSSCAEERKFVIRGEA 744 (769)
Q Consensus 696 c~~l~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~l~~~~i~~~~ 744 (769)
|..-...+.....+++|++|++++|+ ++.++.....++|+.+++++++
T Consensus 297 n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 297 NQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp SCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC-
T ss_pred CcCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceeehhhhc
Confidence 63333333334567888888888875 6665544444777777776553
No 7
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=4e-24 Score=240.85 Aligned_cols=172 Identities=21% Similarity=0.281 Sum_probs=139.0
Q ss_pred EEEcCCccccCCCCCCCcceeEEEEeecccccc--CCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCcc
Q 039535 364 LVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVL--SEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYF 441 (769)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~ 441 (769)
+.+.+.++..+|... .+.++.|++++|.+..+ ..+..+++|++|++++|. +..+++..|..+++|++|++++|
T Consensus 10 c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n--- 84 (549)
T 2z81_A 10 CDGRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDN--- 84 (549)
T ss_dssp EECTTSCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS---
T ss_pred EECCCCccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCC---
Confidence 555666788887633 37999999999999655 358999999999999997 77888777999999999999999
Q ss_pred ccccCCcc-ccCCCCCCEEeccCCCCCc--cchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccc
Q 039535 442 NVLKLPLG-MSKLGSLELLDISHSSIEE--LPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFH 518 (769)
Q Consensus 442 ~~~~l~~~-~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~ 518 (769)
.+..+++. ++.+++|++|++++|.++. +|..++.+++|++|++++|..++.+|...+.++++|++|++++|.+..
T Consensus 85 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-- 162 (549)
T 2z81_A 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN-- 162 (549)
T ss_dssp CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE--
T ss_pred ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc--
Confidence 66677654 8999999999999999984 466789999999999999987788876558999999999999998763
Q ss_pred cccccccccCCccchhhhhhcCCCceEEEEEeCChhh
Q 039535 519 EASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHA 555 (769)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~ 555 (769)
..+..++.+++|+.|++..+....
T Consensus 163 -------------~~~~~l~~l~~L~~L~l~~n~~~~ 186 (549)
T 2z81_A 163 -------------YQSQSLKSIRDIHHLTLHLSESAF 186 (549)
T ss_dssp -------------ECTTTTTTCSEEEEEEEECSBSTT
T ss_pred -------------cChhhhhccccCceEecccCcccc
Confidence 234455556666666665554433
No 8
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=2.1e-24 Score=237.32 Aligned_cols=260 Identities=19% Similarity=0.255 Sum_probs=164.8
Q ss_pred eEEEEcCCccccCCCCCCCcceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCcc
Q 039535 362 NFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYF 441 (769)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~ 441 (769)
..+...+.++..++.+..+++++.|++++|.+..++.+..+++|++|++++|. +..+++ +.++++|++|++++|
T Consensus 49 ~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~L~~n--- 122 (466)
T 1o6v_A 49 TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ-IADITP--LANLTNLTGLTLFNN--- 122 (466)
T ss_dssp CEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSS---
T ss_pred cEEecCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCc-cccChh--hcCCCCCCEEECCCC---
Confidence 44555566667777777778888888888888666667888888888888776 555554 778888888888888
Q ss_pred ccccCCccccCCCCCCEEeccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCcccccc
Q 039535 442 NVLKLPLGMSKLGSLELLDISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEAS 521 (769)
Q Consensus 442 ~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~ 521 (769)
.+..++. +..+++|++|++++|.++.++. +..+++|++|+++++ +..+++ +.++++|++|++++|.+..+
T Consensus 123 ~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n~l~~~---- 192 (466)
T 1o6v_A 123 QITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNKVSDI---- 192 (466)
T ss_dssp CCCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSSCCCCC----
T ss_pred CCCCChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCCcCCCC----
Confidence 5555554 7778888888888888777653 667777777777533 344444 66777777777777765421
Q ss_pred ccccccCCccchhhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccccceeec
Q 039535 522 EDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIH 601 (769)
Q Consensus 522 ~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~ 601 (769)
..+..+++|+.|+++.+.+..... .....+|+.|.++++..... ..+..+++|++|+++
T Consensus 193 -------------~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 193 -------------SVLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQLKDI----GTLASLTNLTDLDLA 251 (466)
T ss_dssp -------------GGGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECC
T ss_pred -------------hhhccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCCcccc----hhhhcCCCCCEEECC
Confidence 235556666666666555433222 11234566666655543332 244555666666655
Q ss_pred c-----------ccCcceEeeeeeccccccCCCccccccceEeecCcccccccccccccCCccEEeecCC
Q 039535 602 D-----------CRGLEELKIDYTEIAQKRREPFVFRSLRRVTMVSCHKLKDLTFLVFAPNLKSISLGDC 660 (769)
Q Consensus 602 ~-----------~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~~ 660 (769)
+ ++.|+.+++++|.+.+.++ ...+++|++|++++| .++.++.+..+++|+.|++++|
T Consensus 252 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 252 NNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFN 319 (466)
T ss_dssp SSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSS
T ss_pred CCccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCC
Confidence 4 2455666666666555444 345566666666666 3455555566666666666665
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=7.8e-24 Score=241.49 Aligned_cols=151 Identities=21% Similarity=0.220 Sum_probs=123.4
Q ss_pred eEEEEcCCccccCCCCCCCcceeEEEEeeccccccC--CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccC
Q 039535 362 NFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLS--EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIG 439 (769)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~ 439 (769)
..+.+.+.++..+|.. -.++++.|++++|.+..++ .+.++++|++|++++|. +..+++..|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~n- 90 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDD-IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGN- 90 (606)
T ss_dssp TEEECTTSCCSSCCTT-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-
T ss_pred CceEccCCCcccCCCC-CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc-ccccCHHHhhchhhcCEeECCCC-
Confidence 4577888888888873 3378999999999886654 47889999999999886 77787777899999999999999
Q ss_pred ccccccC-CccccCCCCCCEEeccCCCCCccc-hhhhcCCCCceeeccCCCccc-ccchHHhcCCCcCcEEEeeccCCCc
Q 039535 440 YFNVLKL-PLGMSKLGSLELLDISHSSIEELP-EELKLLVNLKCLNLRWTDVLN-KIPRQLISNLSRVRVLRMFATGYDR 516 (769)
Q Consensus 440 ~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~-~lp~~~~~~l~~L~~L~l~~~~~~~ 516 (769)
.+..+ |..++++++|++|++++|.++.++ ..++.+++|++|++++|.... .+|.. ++++++|++|++++|.+..
T Consensus 91 --~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 91 --PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp --CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCE
T ss_pred --cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCccee
Confidence 66666 677889999999999999998766 568889999999999997443 56776 8899999999999888765
Q ss_pred cc
Q 039535 517 FH 518 (769)
Q Consensus 517 ~~ 518 (769)
+.
T Consensus 168 ~~ 169 (606)
T 3vq2_A 168 IT 169 (606)
T ss_dssp EC
T ss_pred cC
Confidence 43
No 10
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=5e-24 Score=234.27 Aligned_cols=317 Identities=16% Similarity=0.211 Sum_probs=240.3
Q ss_pred CcceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEE
Q 039535 380 WENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELL 459 (769)
Q Consensus 380 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L 459 (769)
+++++.|.+.++.+..++.+..+++|++|++++|. +..+++ +.++++|++|++++| .+..++. +..+++|++|
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~L~l~~n---~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ-LTDITP--LKNLTKLVDILMNNN---QIADITP-LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSS---CCCCCGG-GTTCTTCCEE
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCc-cCCchh--hhccccCCEEECCCC---ccccChh-hcCCCCCCEE
Confidence 46899999999999888888899999999999987 777766 899999999999999 6666665 8899999999
Q ss_pred eccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhc
Q 039535 460 DISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLG 539 (769)
Q Consensus 460 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 539 (769)
++++|.++.++. +..+++|++|++++|. +..++. +..+++|++|++.+ ... ....+..
T Consensus 118 ~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~-~~~-----------------~~~~~~~ 175 (466)
T 1o6v_A 118 TLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGN-QVT-----------------DLKPLAN 175 (466)
T ss_dssp ECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEE-SCC-----------------CCGGGTT
T ss_pred ECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCC-ccc-----------------Cchhhcc
Confidence 999999998876 8999999999999997 667775 89999999999974 332 1223889
Q ss_pred CCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccccceeeccc-----------cCcce
Q 039535 540 LKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDC-----------RGLEE 608 (769)
Q Consensus 540 l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----------~~l~~ 608 (769)
+++|+.|+++.+.+..+.. .....+|+.|.++++...... .+..+++|+.|+++++ ++|+.
T Consensus 176 l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~ 247 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDISV----LAKLTNLESLIATNNQISDIT----PLGILTNLDELSLNGNQLKDIGTLASLTNLTD 247 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG----GGGCTTCSEEECCSSCCCCCG----GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred CCCCCEEECcCCcCCCChh----hccCCCCCEEEecCCcccccc----cccccCCCCEEECCCCCcccchhhhcCCCCCE
Confidence 9999999999887665433 233468999999988665543 3677899999998764 68999
Q ss_pred EeeeeeccccccCCCccccccceEeecCcccccccccccccCCccEEeecCChhhhhhh-------------ccCccCCc
Q 039535 609 LKIDYTEIAQKRREPFVFRSLRRVTMVSCHKLKDLTFLVFAPNLKSISLGDCDALEEII-------------SVGKFAEV 675 (769)
Q Consensus 609 l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~-------------~~~~~~~~ 675 (769)
+++++|.+.+..+ ...+++|++|++++| .++.++.+..+++|+.|++++|.. +++. ..+.+.++
T Consensus 248 L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 248 LDLANNQISNLAP-LSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQL-EDISPISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp EECCSSCCCCCGG-GTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSCC-SCCGGGGGCTTCSEEECCSSCCSCC
T ss_pred EECCCCccccchh-hhcCCCCCEEECCCC-ccCccccccCCCccCeEEcCCCcc-cCchhhcCCCCCCEEECcCCcCCCc
Confidence 9999999887766 567899999999999 577777788999999999998742 2221 12222222
Q ss_pred ccccCCCCCCCcccccccccccccccccCCCCCCCCcceEeecCCccCCCcCCCCCcccccceEEecc
Q 039535 676 PEMMGHLSPFENLQNLDLSYLLALKSIYWKPLPFTYLKEMVVNGCDQLKKLPLDSSCAEERKFVIRGE 743 (769)
Q Consensus 676 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~l~~~~i~~~ 743 (769)
+. +..+++|+.|++++| .++.++ ....+++|+.|++++|. ++.++.....++|+.+.++++
T Consensus 325 ~~----~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 325 SP----VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ-ISDLTPLANLTRITQLGLNDQ 385 (466)
T ss_dssp GG----GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC-CCBCGGGTTCTTCCEEECCCE
T ss_pred hh----hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc-cCccchhhcCCCCCEEeccCC
Confidence 21 345566666677665 455543 33456777777777664 344333334466777766654
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=9.9e-24 Score=238.96 Aligned_cols=151 Identities=23% Similarity=0.260 Sum_probs=114.1
Q ss_pred ceEEEEcCCccccCCCCCCCcceeEEEEeeccccccC--CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeecc
Q 039535 361 INFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLS--EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNI 438 (769)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~ 438 (769)
...+.|.+.++..+|.. -.+.++.|++++|.+..+. .+..+++|++|++++|. +..+++..|.++++|++|++++|
T Consensus 9 ~~~~~c~~~~l~~ip~~-l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 9 NITYQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TTEEECCSSCCSSCCSS-SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTC
T ss_pred CcEEEeCCCCccccCCC-ccccccEEEccCCccCccChhHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCC
Confidence 34577777788888762 3467888999888886554 57888889999998886 77777777888889999999888
Q ss_pred CccccccCC-ccccCCCCCCEEeccCCCCCccch-hhhcCCCCceeeccCCCccc-ccchHHhcCCCcCcEEEeeccCCC
Q 039535 439 GYFNVLKLP-LGMSKLGSLELLDISHSSIEELPE-ELKLLVNLKCLNLRWTDVLN-KIPRQLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 439 ~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~-~lp~~~~~~l~~L~~L~l~~~~~~ 515 (769)
.+..++ ..+..+.+|++|++++|+++.++. .++.+++|++|++++|.... .+|.. ++++++|++|++++|.+.
T Consensus 87 ---~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 87 ---PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp ---CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCC
T ss_pred ---cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccc
Confidence 555554 567788888888888888887665 47788888888888886333 35665 778888888888887765
Q ss_pred cc
Q 039535 516 RF 517 (769)
Q Consensus 516 ~~ 517 (769)
.+
T Consensus 163 ~~ 164 (570)
T 2z63_A 163 SI 164 (570)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=2.2e-23 Score=245.89 Aligned_cols=152 Identities=18% Similarity=0.207 Sum_probs=129.8
Q ss_pred ceEEEEcCCccccCCCCCCCcceeEEEEeecccccc--CCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeecc
Q 039535 361 INFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVL--SEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNI 438 (769)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~ 438 (769)
...+.|.+.++..+|. .+++++.|+|++|.+..+ ..+..+++|++|++++|..+..+++..|.++++|++|+|++|
T Consensus 6 ~~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 6 GRIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp TEEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred ceEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 5678899999999998 568999999999999654 468999999999999997678887778999999999999999
Q ss_pred CccccccC-CccccCCCCCCEEeccCCCCCc-cchh--hhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCC
Q 039535 439 GYFNVLKL-PLGMSKLGSLELLDISHSSIEE-LPEE--LKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGY 514 (769)
Q Consensus 439 ~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~-lp~~--~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~ 514 (769)
.+..+ |..+.++++|++|++++|.++. +|.. +..+++|++|++++|...+..+...++++++|++|++++|.+
T Consensus 84 ---~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 84 ---KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp ---CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred ---cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 55555 7789999999999999999984 5655 889999999999999854443433489999999999999987
Q ss_pred Ccc
Q 039535 515 DRF 517 (769)
Q Consensus 515 ~~~ 517 (769)
...
T Consensus 161 ~~~ 163 (844)
T 3j0a_A 161 FLV 163 (844)
T ss_dssp CCC
T ss_pred Cee
Confidence 653
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=2.3e-24 Score=245.62 Aligned_cols=328 Identities=11% Similarity=0.143 Sum_probs=216.5
Q ss_pred CCCCcceeEEEEeeccccc------------------c-CCCC--CCCCceEEEeecccchhcccCcccccCCcccEEEe
Q 039535 377 VKGWENVRRLSLMQNQIKV------------------L-SEVP--TCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKI 435 (769)
Q Consensus 377 ~~~~~~l~~l~l~~~~~~~------------------~-~~~~--~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l 435 (769)
+..+++|+.|++++|.+.. + ..+. .+++|++|++++|.....+|. .|.++++|++|++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L 280 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINV 280 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT-TTTTCSSCCEEEC
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH-HHhcCCCCCEEEC
Confidence 4556788888888888754 3 3456 788888888888875566664 3788888888888
Q ss_pred eccCccccc--cCCccccCC------CCCCEEeccCCCCCccch--hhhcCCCCceeeccCCCcccccchHHhcCCCcCc
Q 039535 436 SNIGYFNVL--KLPLGMSKL------GSLELLDISHSSIEELPE--ELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVR 505 (769)
Q Consensus 436 ~~~~~~~~~--~l~~~~~~l------~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~ 505 (769)
++|. .+. .+|..++.+ ++|++|++++|+++.+|. .++.+++|++|++++|...+.+| . ++.+++|+
T Consensus 281 s~n~--~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~ 356 (636)
T 4eco_A 281 ACNR--GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLA 356 (636)
T ss_dssp TTCT--TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEES
T ss_pred cCCC--CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCC
Confidence 8883 144 367666665 888888888888888887 78888888888888887554788 3 78888888
Q ss_pred EEEeeccCCCccccccccccccCCccchhhhhhcCCC-ceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCcccc
Q 039535 506 VLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKY-LEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFI 584 (769)
Q Consensus 506 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~ 584 (769)
+|++++|.+.. ++..+..+++ |+.|+++.+.+..++..... ....+|+.|.++++......+
T Consensus 357 ~L~L~~N~l~~----------------lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~-~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 357 SLNLAYNQITE----------------IPANFCGFTEQVENLSFAHNKLKYIPNIFDA-KSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp EEECCSSEEEE----------------CCTTSEEECTTCCEEECCSSCCSSCCSCCCT-TCSSCEEEEECCSSCTTTTTT
T ss_pred EEECCCCcccc----------------ccHhhhhhcccCcEEEccCCcCcccchhhhh-cccCccCEEECcCCcCCCcch
Confidence 88888887653 3445667777 77777777765533321110 001256777776665444322
Q ss_pred cccccc-------ccccccceeecc-------------ccCcceEeeeeeccccccCCCcc--------ccccceEeecC
Q 039535 585 DATAFA-------DLKHLNELQIHD-------------CRGLEELKIDYTEIAQKRREPFV--------FRSLRRVTMVS 636 (769)
Q Consensus 585 ~~~~l~-------~~~~L~~L~l~~-------------~~~l~~l~l~~~~~~~~~~~~~~--------~~~L~~L~L~~ 636 (769)
..+. .+++|++|++++ ++.|+.|++++|.+..+++.... +++|+.|+|++
T Consensus 420 --~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~ 497 (636)
T 4eco_A 420 --KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497 (636)
T ss_dssp --CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCS
T ss_pred --hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcC
Confidence 1333 455677777665 35677777777777655544322 12788888888
Q ss_pred ccccccccc-cc--ccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCccccccccc------ccccccccCCCC
Q 039535 637 CHKLKDLTF-LV--FAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSY------LLALKSIYWKPL 707 (769)
Q Consensus 637 ~~~l~~l~~-l~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------c~~l~~~~~~~~ 707 (769)
|. ++.++. +. .+++|+.|+|++|.. +++|..+ ..+++|+.|+|++ +...+.+|....
T Consensus 498 N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l----------~~ip~~~---~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~ 563 (636)
T 4eco_A 498 NK-LTKLSDDFRATTLPYLVGIDLSYNSF----------SKFPTQP---LNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563 (636)
T ss_dssp SC-CCBCCGGGSTTTCTTCCEEECCSSCC----------SSCCCGG---GGCSSCCEEECCSCBCTTCCBCCCCCCTTGG
T ss_pred Cc-CCccChhhhhccCCCcCEEECCCCCC----------CCcChhh---hcCCCCCEEECCCCcccccCcccccChHHHh
Confidence 74 555553 43 677888888877532 2333333 3566777777743 333455666666
Q ss_pred CCCCcceEeecCCccCCCcCCCCCcccccceEEeccc
Q 039535 708 PFTYLKEMVVNGCDQLKKLPLDSSCAEERKFVIRGEA 744 (769)
Q Consensus 708 ~~~~L~~L~i~~C~~L~~lp~~~~~~~l~~~~i~~~~ 744 (769)
.+++|+.|++++|. ++.+|.... ++|+.+++++++
T Consensus 564 ~l~~L~~L~Ls~N~-l~~ip~~~~-~~L~~L~Ls~N~ 598 (636)
T 4eco_A 564 LCPSLTQLQIGSND-IRKVNEKIT-PNISVLDIKDNP 598 (636)
T ss_dssp GCSSCCEEECCSSC-CCBCCSCCC-TTCCEEECCSCT
T ss_pred cCCCCCEEECCCCc-CCccCHhHh-CcCCEEECcCCC
Confidence 77788888887774 477776543 677777777653
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=5.8e-24 Score=246.09 Aligned_cols=329 Identities=10% Similarity=0.103 Sum_probs=243.9
Q ss_pred CCCCcceeEEEEeeccccc------------------cC-CCC--CCCCceEEEeecccchhcccCcccccCCcccEEEe
Q 039535 377 VKGWENVRRLSLMQNQIKV------------------LS-EVP--TCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKI 435 (769)
Q Consensus 377 ~~~~~~l~~l~l~~~~~~~------------------~~-~~~--~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l 435 (769)
+..+++|+.|+|++|.+.. ++ .+. .+++|+.|++++|.....+|. .|.++++|++|++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~~L~~L~~L~L 522 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLYDLPELQSLNI 522 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGGGCSSCCEEEC
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH-HHhCCCCCCEEEC
Confidence 5678899999999999865 44 455 899999999999986677774 4899999999999
Q ss_pred eccCcccccc--CCccccCC-------CCCCEEeccCCCCCccch--hhhcCCCCceeeccCCCcccccchHHhcCCCcC
Q 039535 436 SNIGYFNVLK--LPLGMSKL-------GSLELLDISHSSIEELPE--ELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRV 504 (769)
Q Consensus 436 ~~~~~~~~~~--l~~~~~~l-------~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L 504 (769)
++|. .+.. +|..++.+ ++|++|++++|.++.+|. .++.+++|+.|++++|. +..+| . ++.+++|
T Consensus 523 s~N~--~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~-~~~L~~L 597 (876)
T 4ecn_A 523 ACNR--GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A-FGTNVKL 597 (876)
T ss_dssp TTCT--TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C-CCTTSEE
T ss_pred cCCC--CcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-h-hcCCCcc
Confidence 9993 1443 66655554 499999999999999998 89999999999999998 55888 3 8999999
Q ss_pred cEEEeeccCCCccccccccccccCCccchhhhhhcCCC-ceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccc
Q 039535 505 RVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKY-LEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYF 583 (769)
Q Consensus 505 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~ 583 (769)
++|++++|.+.. ++..+..+++ |+.|+++.+.+..++...... ...+|+.|.++++......
T Consensus 598 ~~L~Ls~N~l~~----------------lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~-~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 598 TDLKLDYNQIEE----------------IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK-SVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp SEEECCSSCCSC----------------CCTTSCEECTTCCEEECCSSCCCSCCSCCCTT-CSSCEEEEECCSSCTTTTS
T ss_pred eEEECcCCcccc----------------chHHHhhccccCCEEECcCCCCCcCchhhhcc-ccCCCCEEECcCCcCCCcc
Confidence 999999998764 4455778888 999999888766433211111 1124888888877654432
Q ss_pred c-cccccc--ccccccceeecc-------------ccCcceEeeeeeccccccCCCcc--------ccccceEeecCccc
Q 039535 584 I-DATAFA--DLKHLNELQIHD-------------CRGLEELKIDYTEIAQKRREPFV--------FRSLRRVTMVSCHK 639 (769)
Q Consensus 584 ~-~~~~l~--~~~~L~~L~l~~-------------~~~l~~l~l~~~~~~~~~~~~~~--------~~~L~~L~L~~~~~ 639 (769)
+ ....+. .+++|+.|++++ +++|+.|++++|.+..++..... +++|+.|+|++| .
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~ 739 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-K 739 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-C
T ss_pred ccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC-C
Confidence 2 111222 335788888775 36788888888888866654433 238999999999 4
Q ss_pred cccccc-cc--ccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCccccccccc------ccccccccCCCCCCC
Q 039535 640 LKDLTF-LV--FAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSY------LLALKSIYWKPLPFT 710 (769)
Q Consensus 640 l~~l~~-l~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------c~~l~~~~~~~~~~~ 710 (769)
++.++. +. .+++|+.|+|++|.. .++|.. +..+++|+.|+|++ |.....+|.....++
T Consensus 740 L~~lp~~l~~~~l~~L~~L~Ls~N~L----------~~lp~~---l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 740 LTSLSDDFRATTLPYLSNMDVSYNCF----------SSFPTQ---PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp CCCCCGGGSTTTCTTCCEEECCSSCC----------SSCCCG---GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred CccchHHhhhccCCCcCEEEeCCCCC----------Cccchh---hhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence 666664 44 789999999988633 334443 33677899999976 433456777777889
Q ss_pred CcceEeecCCccCCCcCCCCCcccccceEEeccc
Q 039535 711 YLKEMVVNGCDQLKKLPLDSSCAEERKFVIRGEA 744 (769)
Q Consensus 711 ~L~~L~i~~C~~L~~lp~~~~~~~l~~~~i~~~~ 744 (769)
+|+.|++++| +++.+|.... ++|+.+++++++
T Consensus 807 ~L~~L~Ls~N-~L~~Ip~~l~-~~L~~LdLs~N~ 838 (876)
T 4ecn_A 807 SLIQLQIGSN-DIRKVDEKLT-PQLYILDIADNP 838 (876)
T ss_dssp SCCEEECCSS-CCCBCCSCCC-SSSCEEECCSCT
T ss_pred CCCEEECCCC-CCCccCHhhc-CCCCEEECCCCC
Confidence 9999999888 4588887644 688888888775
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=9.5e-24 Score=244.28 Aligned_cols=293 Identities=16% Similarity=0.193 Sum_probs=167.2
Q ss_pred ccCcccccCCcccEEEeeccCcccccc------------------CCcccc--CCCCCCEEeccCCCCC-ccchhhhcCC
Q 039535 419 IAGGYFQFMPSLKVLKISNIGYFNVLK------------------LPLGMS--KLGSLELLDISHSSIE-ELPEELKLLV 477 (769)
Q Consensus 419 i~~~~~~~l~~L~~L~l~~~~~~~~~~------------------l~~~~~--~l~~L~~L~l~~~~i~-~lp~~~~~l~ 477 (769)
+|.. |.++++|++|+|++| .+.. +|..++ ++++|++|++++|.+. .+|..++.++
T Consensus 440 IP~~-l~~L~~L~~L~Ls~N---~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~ 515 (876)
T 4ecn_A 440 ISKA-IQRLTKLQIIYFANS---PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515 (876)
T ss_dssp ECGG-GGGCTTCCEEEEESC---CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS
T ss_pred hhHH-HhcCCCCCEEECcCC---cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCC
Confidence 4443 677777777777777 4444 677766 7777777777777655 6777777777
Q ss_pred CCceeeccCCC-ccc-ccchHHhcCCC-------cCcEEEeeccCCCccccccccccccCCccchhh--hhhcCCCceEE
Q 039535 478 NLKCLNLRWTD-VLN-KIPRQLISNLS-------RVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQ--ELLGLKYLEVL 546 (769)
Q Consensus 478 ~L~~L~l~~~~-~l~-~lp~~~~~~l~-------~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~l~~L~~l 546 (769)
+|++|++++|. ..+ .+|.. ++.++ +|++|++++|.+.. ++. .++.+++|+.|
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~L~~----------------ip~~~~l~~L~~L~~L 578 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNNLEE----------------FPASASLQKMVKLGLL 578 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSCCCB----------------CCCHHHHTTCTTCCEE
T ss_pred CCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCCcCCc----------------cCChhhhhcCCCCCEE
Confidence 77777777776 333 46665 44444 77777777777653 333 56677777777
Q ss_pred EEEeCChhhHHHHHhcccccccceeEEEeccCCCcccccccccccccc-ccceeecccc--------------CcceEee
Q 039535 547 ELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKH-LNELQIHDCR--------------GLEELKI 611 (769)
Q Consensus 547 ~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~--------------~l~~l~l 611 (769)
+++.+.+..++ .....++|+.|.++++...... ..+..+++ |++|+++++. +|+.|++
T Consensus 579 ~Ls~N~l~~lp----~~~~L~~L~~L~Ls~N~l~~lp---~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~L 651 (876)
T 4ecn_A 579 DCVHNKVRHLE----AFGTNVKLTDLKLDYNQIEEIP---EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDF 651 (876)
T ss_dssp ECTTSCCCBCC----CCCTTSEESEEECCSSCCSCCC---TTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEEC
T ss_pred ECCCCCcccch----hhcCCCcceEEECcCCccccch---HHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEEC
Confidence 77766655333 2222346666676666544222 35666666 7777776641 2667777
Q ss_pred eeeccccccCCCc------cccccceEeecCccccccccc--ccccCCccEEeecCChhhhhhh----------------
Q 039535 612 DYTEIAQKRREPF------VFRSLRRVTMVSCHKLKDLTF--LVFAPNLKSISLGDCDALEEII---------------- 667 (769)
Q Consensus 612 ~~~~~~~~~~~~~------~~~~L~~L~L~~~~~l~~l~~--l~~l~~L~~L~l~~~~~l~~~~---------------- 667 (769)
++|.+.+.+|... .+++|+.|+|++|. ++.++. +..+++|+.|+|++|.. +.++
T Consensus 652 s~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~~~~~~~l~nl~~ 729 (876)
T 4ecn_A 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLM-TSIPENSLKPKDGNYKNTYL 729 (876)
T ss_dssp CSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCC-SCCCTTSSSCTTSCCTTGGG
T ss_pred cCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcC-CccChHHhccccccccccCC
Confidence 7777665443221 23467777777773 445543 23567777777776521 1211
Q ss_pred ------ccCccCCcccccCCCCCCCcccccccccccccccccCCCCCCCCcceEeecC------CccCCCcCCCCCc-cc
Q 039535 668 ------SVGKFAEVPEMMGHLSPFENLQNLDLSYLLALKSIYWKPLPFTYLKEMVVNG------CDQLKKLPLDSSC-AE 734 (769)
Q Consensus 668 ------~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~------C~~L~~lp~~~~~-~~ 734 (769)
..|.++.+|..+. ...+++|+.|+|++| .++.+|.....+++|+.|++++ |.-...+|..... ++
T Consensus 730 L~~L~Ls~N~L~~lp~~l~-~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~ 807 (876)
T 4ecn_A 730 LTTIDLRFNKLTSLSDDFR-ATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807 (876)
T ss_dssp CCEEECCSSCCCCCCGGGS-TTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSS
T ss_pred ccEEECCCCCCccchHHhh-hccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCC
Confidence 1112222332221 014455566666553 4444555455555666665544 2223344433322 55
Q ss_pred ccceEEecc
Q 039535 735 ERKFVIRGE 743 (769)
Q Consensus 735 l~~~~i~~~ 743 (769)
|+.+.+++|
T Consensus 808 L~~L~Ls~N 816 (876)
T 4ecn_A 808 LIQLQIGSN 816 (876)
T ss_dssp CCEEECCSS
T ss_pred CCEEECCCC
Confidence 555555544
No 16
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=6.8e-24 Score=224.02 Aligned_cols=282 Identities=16% Similarity=0.175 Sum_probs=216.1
Q ss_pred CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCccchhhhcCC
Q 039535 398 EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEELPEELKLLV 477 (769)
Q Consensus 398 ~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~ 477 (769)
.+..+++|++|++++|. +..++. +..+++|++|++++| .+..++. +..+++|++|++++|.++.++ .+..++
T Consensus 39 ~~~~l~~L~~L~l~~~~-i~~~~~--~~~~~~L~~L~l~~n---~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~ 110 (347)
T 4fmz_A 39 TQEELESITKLVVAGEK-VASIQG--IEYLTNLEYLNLNGN---QITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLT 110 (347)
T ss_dssp CHHHHTTCSEEECCSSC-CCCCTT--GGGCTTCCEEECCSS---CCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCT
T ss_pred cchhcccccEEEEeCCc-cccchh--hhhcCCccEEEccCC---ccccchh-hhcCCcCCEEEccCCcccCch-HHcCCC
Confidence 34568899999999887 667764 888999999999999 6666765 889999999999999999886 588999
Q ss_pred CCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCChhhHH
Q 039535 478 NLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQ 557 (769)
Q Consensus 478 ~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~ 557 (769)
+|++|++++|. +..++. +..+++|++|++++|.... .+..+..+++|+.|+++.+......
T Consensus 111 ~L~~L~l~~n~-i~~~~~--~~~l~~L~~L~l~~n~~~~----------------~~~~~~~l~~L~~L~l~~~~~~~~~ 171 (347)
T 4fmz_A 111 NLRELYLNEDN-ISDISP--LANLTKMYSLNLGANHNLS----------------DLSPLSNMTGLNYLTVTESKVKDVT 171 (347)
T ss_dssp TCSEEECTTSC-CCCCGG--GTTCTTCCEEECTTCTTCC----------------CCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred cCCEEECcCCc-ccCchh--hccCCceeEEECCCCCCcc----------------cccchhhCCCCcEEEecCCCcCCch
Confidence 99999999997 777776 8899999999999996542 2344889999999999987765443
Q ss_pred HHHhcccccccceeEEEeccCCCccccccccccccccccceeeccccCcceEeeeeeccccccCCCccccccceEeecCc
Q 039535 558 ILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGLEELKIDYTEIAQKRREPFVFRSLRRVTMVSC 637 (769)
Q Consensus 558 ~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~ 637 (769)
. ....++|+.|.++++...... .+..+++|+.|+++++ .+.+..+ ...+++|++|++++|
T Consensus 172 ~----~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~n-----------~l~~~~~-~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 172 P----IANLTDLYSLSLNYNQIEDIS----PLASLTSLHYFTAYVN-----------QITDITP-VANMTRLNSLKIGNN 231 (347)
T ss_dssp G----GGGCTTCSEEECTTSCCCCCG----GGGGCTTCCEEECCSS-----------CCCCCGG-GGGCTTCCEEECCSS
T ss_pred h----hccCCCCCEEEccCCcccccc----cccCCCccceeecccC-----------CCCCCch-hhcCCcCCEEEccCC
Confidence 3 223457888888877544332 2555566666655554 3333333 356899999999999
Q ss_pred ccccccccccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCcccccccccccccccccCCCCCCCCcceEee
Q 039535 638 HKLKDLTFLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALKSIYWKPLPFTYLKEMVV 717 (769)
Q Consensus 638 ~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i 717 (769)
.++.++.+..+++|+.|++++|.. ++ + ..+..+++|++|++++| .++.++ ....+++|+.|++
T Consensus 232 -~l~~~~~~~~l~~L~~L~l~~n~l-~~---------~----~~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L 294 (347)
T 4fmz_A 232 -KITDLSPLANLSQLTWLEIGTNQI-SD---------I----NAVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFL 294 (347)
T ss_dssp -CCCCCGGGTTCTTCCEEECCSSCC-CC---------C----GGGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEEC
T ss_pred -ccCCCcchhcCCCCCEEECCCCcc-CC---------C----hhHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEEC
Confidence 577777799999999999999742 22 1 13557789999999997 777775 3457899999999
Q ss_pred cCCccCCCcC-CCC-CcccccceEEeccc
Q 039535 718 NGCDQLKKLP-LDS-SCAEERKFVIRGEA 744 (769)
Q Consensus 718 ~~C~~L~~lp-~~~-~~~~l~~~~i~~~~ 744 (769)
++|. ++..+ ... ..++|+.+.+++|+
T Consensus 295 ~~n~-l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 295 NNNQ-LGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp CSSC-CCGGGHHHHHTCTTCSEEECCSSS
T ss_pred cCCc-CCCcChhHhhccccCCEEEccCCc
Confidence 9994 55443 222 33889999998775
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=2e-23 Score=224.00 Aligned_cols=303 Identities=13% Similarity=0.133 Sum_probs=223.5
Q ss_pred CCCcceeEEEEeeccccccCC--CCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCC-ccccCCC
Q 039535 378 KGWENVRRLSLMQNQIKVLSE--VPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLP-LGMSKLG 454 (769)
Q Consensus 378 ~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~-~~~~~l~ 454 (769)
..+++++.+.+.++.+..++. +..+++|++|++++|. +..+++..|..+++|++|++++| .+..++ ..+..++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n---~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN---AIRYLPPHVFQNVP 117 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSS---CCCCCCTTTTTTCT
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCC---CCCcCCHHHhcCCC
Confidence 345789999999998877765 5788999999999887 77888777999999999999999 666664 4578899
Q ss_pred CCCEEeccCCCCCccchh-hhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccch
Q 039535 455 SLELLDISHSSIEELPEE-LKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVL 533 (769)
Q Consensus 455 ~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 533 (769)
+|++|++++|+++.+|.. +..+++|++|++++|. +..+++..+..+++|++|++++|.+..+
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------- 180 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHV---------------- 180 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBC----------------
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCcc----------------
Confidence 999999999999988877 4789999999999997 5566555588999999999999987632
Q ss_pred hhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccccceeeccccCcceEeeee
Q 039535 534 IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGLEELKIDY 613 (769)
Q Consensus 534 ~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~l~~ 613 (769)
.+..+++|+.++++.+....+ ....+++.|.++++....... ...++|+.|+++ +
T Consensus 181 --~~~~l~~L~~L~l~~n~l~~~-------~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~-----------~ 235 (390)
T 3o6n_A 181 --DLSLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNSINVVRG-----PVNVELTILKLQ-----------H 235 (390)
T ss_dssp --CGGGCTTCSEEECCSSCCSEE-------ECCSSCSEEECCSSCCCEEEC-----CCCSSCCEEECC-----------S
T ss_pred --ccccccccceeeccccccccc-------CCCCcceEEECCCCeeeeccc-----cccccccEEECC-----------C
Confidence 256678888888876654321 223466777776654433321 112445555544 4
Q ss_pred eccccccCCCccccccceEeecCccccccc--ccccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCccccc
Q 039535 614 TEIAQKRREPFVFRSLRRVTMVSCHKLKDL--TFLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNL 691 (769)
Q Consensus 614 ~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l--~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L 691 (769)
|.+.+. +....+++|++|++++|. ++.+ ..+..+++|+.|++++|.. + .++. ....+++|++|
T Consensus 236 n~l~~~-~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l-~---------~~~~---~~~~l~~L~~L 300 (390)
T 3o6n_A 236 NNLTDT-AWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRL-V---------ALNL---YGQPIPTLKVL 300 (390)
T ss_dssp SCCCCC-GGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSCC-C---------EEEC---SSSCCTTCCEE
T ss_pred CCCccc-HHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCCCcC-c---------ccCc---ccCCCCCCCEE
Confidence 444432 334568899999999984 5543 3477889999999988632 2 2222 23467899999
Q ss_pred ccccccccccccCCCCCCCCcceEeecCCccCCCcCCCCCcccccceEEeccc
Q 039535 692 DLSYLLALKSIYWKPLPFTYLKEMVVNGCDQLKKLPLDSSCAEERKFVIRGEA 744 (769)
Q Consensus 692 ~l~~c~~l~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~l~~~~i~~~~ 744 (769)
++++| .++.++.....+++|+.|++++| .++.+| ....++|+.+.+++++
T Consensus 301 ~L~~n-~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~-~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 301 DLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLK-LSTHHTLKNLTLSHND 350 (390)
T ss_dssp ECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCC-CCTTCCCSEEECCSSC
T ss_pred ECCCC-cceecCccccccCcCCEEECCCC-ccceeC-chhhccCCEEEcCCCC
Confidence 99996 77788776677899999999887 577777 3344788888888654
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=4.1e-23 Score=228.05 Aligned_cols=172 Identities=27% Similarity=0.296 Sum_probs=138.9
Q ss_pred ceEEEEcCCccccCCCCCCCcceeEEEEeecccccc--CCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeecc
Q 039535 361 INFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVL--SEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNI 438 (769)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~ 438 (769)
...+.+.+.++..+|.. -.++++.|++++|.+..+ ..+..+++|++|++++|. +..+++..|.++++|++|++++|
T Consensus 13 ~~~v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TTEEECCSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCC
Confidence 34577788888888763 347899999999999665 357889999999999886 77777777999999999999999
Q ss_pred CccccccCCc-cccCCCCCCEEeccCCCCCcc-chhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCc
Q 039535 439 GYFNVLKLPL-GMSKLGSLELLDISHSSIEEL-PEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDR 516 (769)
Q Consensus 439 ~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~ 516 (769)
.+..+|. .+..+++|++|++++|.++.+ +..+..+++|++|++++|. +..+++..+..+++|++|++++|.+..
T Consensus 91 ---~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 91 ---RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp ---CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred ---cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcc
Confidence 6777775 468899999999999999855 5568899999999999997 555544448899999999999998763
Q ss_pred cccccccccccCCccchhhhhhcCCCceEEEEEeCCh
Q 039535 517 FHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY 553 (769)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~ 553 (769)
.....+..+++|+.|++..+.+
T Consensus 167 ---------------~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 167 ---------------IPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp ---------------CCHHHHTTCTTCCEEEEESCCC
T ss_pred ---------------cChhHhcccCCCcEEeCCCCcC
Confidence 2455678889999998886654
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=1.6e-23 Score=238.74 Aligned_cols=60 Identities=20% Similarity=0.271 Sum_probs=40.2
Q ss_pred CCCcccccccccccccccccCCCCCCCCcceEeecC------CccCCCcCCCCCc-ccccceEEeccc
Q 039535 684 PFENLQNLDLSYLLALKSIYWKPLPFTYLKEMVVNG------CDQLKKLPLDSSC-AEERKFVIRGEA 744 (769)
Q Consensus 684 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~------C~~L~~lp~~~~~-~~l~~~~i~~~~ 744 (769)
.+++|+.|+|++| .++.+|.....+++|+.|++++ +.-...+|..... ++|+.+.++++.
T Consensus 511 ~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 511 TLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp TCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred cCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence 5667888888874 5666776666778888888843 4345556655533 777777777554
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=9.9e-23 Score=232.36 Aligned_cols=357 Identities=16% Similarity=0.120 Sum_probs=221.0
Q ss_pred ceEEEEcCCccccCCCCCCCcceeEEEEeecccccc--CCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeecc
Q 039535 361 INFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVL--SEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNI 438 (769)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~ 438 (769)
...+.+.+.++..+|... .+.++.|++++|.+..+ ..+.++++|++|++++|. +..+.+..|.++++|++|++++|
T Consensus 14 ~~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTL-PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TTEEECTTSCCSSCCTTS-CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEECCCCCcccCcCCC-CCcCcEEEccCCccCcCChhHhccCccceEEECCCCc-cceeChhhccCccccCeeeCCCC
Confidence 446778888888888632 36899999999999665 357899999999999987 67777777999999999999999
Q ss_pred CccccccC-CccccCCCCCCEEeccCCCCCcc-chhhhcCCCCceeeccCCCccccc--chHHhcCCCcCcEEEeeccCC
Q 039535 439 GYFNVLKL-PLGMSKLGSLELLDISHSSIEEL-PEELKLLVNLKCLNLRWTDVLNKI--PRQLISNLSRVRVLRMFATGY 514 (769)
Q Consensus 439 ~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l--p~~~~~~l~~L~~L~l~~~~~ 514 (769)
.+..+ |..++.+++|++|++++|.++.+ |..+..+++|++|++++|. +..+ |. +..+++|++|++++|.+
T Consensus 92 ---~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~--~~~l~~L~~L~L~~n~l 165 (606)
T 3t6q_A 92 ---PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPK--GFPTEKLKVLDFQNNAI 165 (606)
T ss_dssp ---CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCT--TCCCTTCCEEECCSSCC
T ss_pred ---cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCccc--ccCCcccCEEEcccCcc
Confidence 55554 66788999999999999999976 4568899999999999997 4444 54 55699999999999987
Q ss_pred CccccccccccccCCccchhhhhhcCCCce--EEEEEeCChhhHHHH---------------------Hhccc-------
Q 039535 515 DRFHEASEDSVLFGGGEVLIQELLGLKYLE--VLELTLGSYHALQIL---------------------LSSNK------- 564 (769)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~--~l~l~~~~~~~~~~l---------------------~~~~~------- 564 (769)
..+ .+..++.+++|+ .++++.+.+.....- .....
T Consensus 166 ~~~---------------~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l 230 (606)
T 3t6q_A 166 HYL---------------SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSL 230 (606)
T ss_dssp CEE---------------CHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEE
T ss_pred ccc---------------ChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhhe
Confidence 632 344556666666 454444332211100 00000
Q ss_pred ---------------------ccccceeEEEeccCCCccccccccccccccccceeeccc------------cCcceEee
Q 039535 565 ---------------------LKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDC------------RGLEELKI 611 (769)
Q Consensus 565 ---------------------~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~------------~~l~~l~l 611 (769)
...+++.|.+.++....... ..+..+++|++|+++++ +.|+.+++
T Consensus 231 ~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l 308 (606)
T 3t6q_A 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS--NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVL 308 (606)
T ss_dssp ECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT--TTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEEC
T ss_pred echhhccccccccChhHhchhhcCceeEEEeecCccCccCH--HHhccccCCCEEeccCCccCCCChhhcccccCCEEEC
Confidence 00134455555443333222 23556666666666542 45666666
Q ss_pred eeeccccccC-CCccccccceEeecCccccccccc--ccccCCccEEeecCChhhhhh----------------hccCcc
Q 039535 612 DYTEIAQKRR-EPFVFRSLRRVTMVSCHKLKDLTF--LVFAPNLKSISLGDCDALEEI----------------ISVGKF 672 (769)
Q Consensus 612 ~~~~~~~~~~-~~~~~~~L~~L~L~~~~~l~~l~~--l~~l~~L~~L~l~~~~~l~~~----------------~~~~~~ 672 (769)
++|.+.+..+ ....+++|++|++++|.....++. +..+++|+.|++++|...... +..+.+
T Consensus 309 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 388 (606)
T 3t6q_A 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388 (606)
T ss_dssp TTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC
T ss_pred ccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcC
Confidence 6666655544 234556666666666643323332 555666666666655321110 000111
Q ss_pred CCcccccCCCCCCCcccccccccccccccccCC-CCCCCCcceEeecCCccCCCcCCCCC-cccccceEEeccc
Q 039535 673 AEVPEMMGHLSPFENLQNLDLSYLLALKSIYWK-PLPFTYLKEMVVNGCDQLKKLPLDSS-CAEERKFVIRGEA 744 (769)
Q Consensus 673 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~i~~C~~L~~lp~~~~-~~~l~~~~i~~~~ 744 (769)
..++ ...+..+++|++|++++|..-...+.. ...+++|+.|++++|.--...|.... .++|+.+.++++.
T Consensus 389 ~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 389 LSLK--TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp EEEC--TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred CcCC--HHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 1111 123445667777777775322222222 44677788888877743333333332 3777777777654
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=1.9e-22 Score=225.37 Aligned_cols=366 Identities=16% Similarity=0.149 Sum_probs=237.5
Q ss_pred eEEEEcCCccccCCCCCCCcceeEEEEeeccccccC--CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccC
Q 039535 362 NFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLS--EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIG 439 (769)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~ 439 (769)
..+.+++.++..+|.... ++++.|++++|.+..++ .+..+++|++|++++|. +..+++..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N- 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHN- 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSS-
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCC-
Confidence 456777778888876433 89999999999997664 57899999999999997 77777667999999999999999
Q ss_pred ccccccCCccccCCCCCCEEeccCCCCCc--cchhhhcCCCCceeeccCCCcccccchHHhcCCCcC--cEEEeeccCC-
Q 039535 440 YFNVLKLPLGMSKLGSLELLDISHSSIEE--LPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRV--RVLRMFATGY- 514 (769)
Q Consensus 440 ~~~~~~l~~~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L--~~L~l~~~~~- 514 (769)
.+..+|.. .+++|++|++++|.++. +|..++.+++|++|++++|. +... .+..+++| ++|++++|.+
T Consensus 80 --~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 80 --KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKS---SVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp --CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGG---GGGGGTTSCEEEEEEEECTTT
T ss_pred --ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchh---hccccccceeeEEEeeccccc
Confidence 66777766 79999999999999985 67889999999999999997 3332 26778888 9999999987
Q ss_pred -Cccccccccc-c------------ccCC----------------------------ccchhhhhhcCCCceEEEEEeCC
Q 039535 515 -DRFHEASEDS-V------------LFGG----------------------------GEVLIQELLGLKYLEVLELTLGS 552 (769)
Q Consensus 515 -~~~~~~~~~~-~------------~~~~----------------------------~~~~~~~l~~l~~L~~l~l~~~~ 552 (769)
.......... . +.+. -...+..++.+++|+.|++..+.
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE 231 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccc
Confidence 2211111000 0 0000 00012245556666666666544
Q ss_pred hhh--HHHHHhcccccccceeEEEeccCCCccccccccc-----ccccc--------------------------cccee
Q 039535 553 YHA--LQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAF-----ADLKH--------------------------LNELQ 599 (769)
Q Consensus 553 ~~~--~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l-----~~~~~--------------------------L~~L~ 599 (769)
+.. ...+.... ...+++.|.++++......+ ..+ ..+++ |+.|+
T Consensus 232 l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~p--~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 232 TTWNSFIRILQLV-WHTTVWYFSISNVKLQGQLD--FRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EEHHHHHHHHHHH-HTSSCSEEEEEEEEEESCCC--CCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEE
T ss_pred cCHHHHHHHHHHh-hhCcccEEEeecccccCccc--cchhhcccccCceeEeccccccceecchhhhhcccccCceeEEE
Confidence 322 11111111 12367777777664331111 122 33333 44444
Q ss_pred e-----------ccccCcceEeeeeeccccccC-CCccccccceEeecCcccccccc----cccccCCccEEeecCChhh
Q 039535 600 I-----------HDCRGLEELKIDYTEIAQKRR-EPFVFRSLRRVTMVSCHKLKDLT----FLVFAPNLKSISLGDCDAL 663 (769)
Q Consensus 600 l-----------~~~~~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~l~~l~----~l~~l~~L~~L~l~~~~~l 663 (769)
+ ..++.|+.+++++|.+.+..+ ....+++|+.|++++|. ++.++ .+..+++|++|++++|...
T Consensus 309 l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~ 387 (520)
T 2z7x_B 309 VSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVS 387 (520)
T ss_dssp EESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCB
T ss_pred cCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCC
Confidence 3 234566777777777666333 33567777777777774 44322 2566777777777776543
Q ss_pred hhhhccCccCCccc---------cc--CCCCCC-CcccccccccccccccccCCCCCCCCcceEeecCCccCCCcCCC-C
Q 039535 664 EEIISVGKFAEVPE---------MM--GHLSPF-ENLQNLDLSYLLALKSIYWKPLPFTYLKEMVVNGCDQLKKLPLD-S 730 (769)
Q Consensus 664 ~~~~~~~~~~~~~~---------~~--~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~-~ 730 (769)
..++.. .+...+. .+ .....+ ++|+.|++++| .++.+|.....+++|++|++++| +++.+|.. .
T Consensus 388 ~~l~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~ 464 (520)
T 2z7x_B 388 YDEKKG-DCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIF 464 (520)
T ss_dssp CCGGGC-SCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTT
T ss_pred cccccc-hhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHh
Confidence 222211 0000000 00 000112 58899999885 77788877778999999999988 78899986 3
Q ss_pred -CcccccceEEecccc
Q 039535 731 -SCAEERKFVIRGEAH 745 (769)
Q Consensus 731 -~~~~l~~~~i~~~~~ 745 (769)
..++|+.+++++++=
T Consensus 465 ~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 465 DRLTSLQKIWLHTNPW 480 (520)
T ss_dssp TTCTTCCEEECCSSCB
T ss_pred ccCCcccEEECcCCCC
Confidence 338899999986653
No 22
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=2.6e-23 Score=242.68 Aligned_cols=169 Identities=21% Similarity=0.274 Sum_probs=90.9
Q ss_pred EEEcCCccccCCCCCCCcceeEEEEeeccccc-cCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccc
Q 039535 364 LVCAGAGLKEAPDVKGWENVRRLSLMQNQIKV-LSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFN 442 (769)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~ 442 (769)
+...+..+....+...+++++.|++++|.+.. ++.+..+++|++|++++|.....++ ..+.++++|++|++++|.
T Consensus 183 L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~--- 258 (768)
T 3rgz_A 183 LAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQ--- 258 (768)
T ss_dssp EECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHH-HHTTTCSSCCEEECCSSC---
T ss_pred EECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCccc-HHHhcCCCCCEEECCCCc---
Confidence 33333333444334556667777777666632 3446666777777777665222333 336666777777777663
Q ss_pred cccCCccccCCCCCCEEeccCCCCC-ccchhhhcC-CCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccc
Q 039535 443 VLKLPLGMSKLGSLELLDISHSSIE-ELPEELKLL-VNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEA 520 (769)
Q Consensus 443 ~~~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l-~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~ 520 (769)
+....+.. .+++|++|++++|.++ .+|..+... ++|++|++++|...+.+|.. ++++++|++|++++|.+..
T Consensus 259 l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~---- 332 (768)
T 3rgz_A 259 FVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSG---- 332 (768)
T ss_dssp CEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEE----
T ss_pred ccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccC----
Confidence 22211111 5566666666666655 555555443 66666666666544445544 5666666666666665431
Q ss_pred cccccccCCccchhhhhhcCCCceEEEEEeCC
Q 039535 521 SEDSVLFGGGEVLIQELLGLKYLEVLELTLGS 552 (769)
Q Consensus 521 ~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~ 552 (769)
......+..+++|+.|+++.+.
T Consensus 333 ----------~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 333 ----------ELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp ----------ECCHHHHTTCTTCCEEECCSSE
T ss_pred ----------cCCHHHHhcCCCCCEEeCcCCc
Confidence 1112225556666666655544
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=1.3e-22 Score=231.34 Aligned_cols=370 Identities=15% Similarity=0.134 Sum_probs=210.9
Q ss_pred ceEEEEcCCccccCC--CCCCCcceeEEEEeecccccc--CCCCCCCCceEEEeecccchhcccCcccccCCcccEEEee
Q 039535 361 INFLVCAGAGLKEAP--DVKGWENVRRLSLMQNQIKVL--SEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKIS 436 (769)
Q Consensus 361 ~~~~~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~ 436 (769)
...+...+..+..++ .+..+++++.|++++|.+..+ ..+.++++|++|++++|. +..+++..|.++++|++|+++
T Consensus 34 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~ 112 (606)
T 3vq2_A 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAV 112 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECT
T ss_pred cCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCEEEcc
Confidence 344555555555553 366778888888888887554 246788888888888887 666655668888888888888
Q ss_pred ccCccccccCC-ccccCCCCCCEEeccCCCCC--ccchhhhcCCCCceeeccCCCcccccchHHhcCCC-----------
Q 039535 437 NIGYFNVLKLP-LGMSKLGSLELLDISHSSIE--ELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLS----------- 502 (769)
Q Consensus 437 ~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~----------- 502 (769)
+| .+..++ ..++.+++|++|++++|.++ .+|..++.+++|++|++++|. +..+++..++.+.
T Consensus 113 ~n---~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~L~l 188 (606)
T 3vq2_A 113 ET---KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSLDM 188 (606)
T ss_dssp TS---CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTTCCCEEEC
T ss_pred CC---ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccccccceeec
Confidence 88 555554 56788888888888888887 467888888888888888886 3333322233332
Q ss_pred ----------------cCcEEEeeccCCCcccc-----------------------------------------------
Q 039535 503 ----------------RVRVLRMFATGYDRFHE----------------------------------------------- 519 (769)
Q Consensus 503 ----------------~L~~L~l~~~~~~~~~~----------------------------------------------- 519 (769)
+|++|++++|.......
T Consensus 189 ~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 268 (606)
T 3vq2_A 189 SLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred cCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence 44555555443320000
Q ss_pred --------ccccc---------cccCCccchhhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCcc
Q 039535 520 --------ASEDS---------VLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKY 582 (769)
Q Consensus 520 --------~~~~~---------~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~ 582 (769)
..+.+ .+....-.....+..+++|+.|++..+....++.+ ..++++.|.+.++.....
T Consensus 269 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~-----~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL-----DLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp CCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCC-----CCSSCCEEEEESCSSCEE
T ss_pred cccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccC-----CCCccceeeccCCcCccc
Confidence 00000 00000000011345566788888877766443321 234566666655532221
Q ss_pred cc----------------------ccccccccccccceeecc------------ccCcceEeeeeeccccccC--CCccc
Q 039535 583 FI----------------------DATAFADLKHLNELQIHD------------CRGLEELKIDYTEIAQKRR--EPFVF 626 (769)
Q Consensus 583 ~~----------------------~~~~l~~~~~L~~L~l~~------------~~~l~~l~l~~~~~~~~~~--~~~~~ 626 (769)
.. ....+..+++|++|++++ +++|+.+++++|.+.+..+ ....+
T Consensus 344 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 423 (606)
T 3vq2_A 344 FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423 (606)
T ss_dssp CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhcc
Confidence 10 012233344444444433 2344444555554444433 22345
Q ss_pred cccceEeecCcccccccc-cccccCCccEEeecCChhhhhhh---------------ccCccCCcccccCCCCCCCcccc
Q 039535 627 RSLRRVTMVSCHKLKDLT-FLVFAPNLKSISLGDCDALEEII---------------SVGKFAEVPEMMGHLSPFENLQN 690 (769)
Q Consensus 627 ~~L~~L~L~~~~~l~~l~-~l~~l~~L~~L~l~~~~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~L~~ 690 (769)
++|+.|++++|......+ .+..+++|++|++++|.....++ ..+.+++++ ...+..+++|++
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~ 501 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS--WGVFDTLHRLQL 501 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCE
T ss_pred ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccC--hhhhcccccCCE
Confidence 555555555553222222 24555666666666654322111 111111111 123556778888
Q ss_pred cccccccccccc-cCCCCCCCCcceEeecCCccCCCcCCCCCc-c-cccceEEeccc
Q 039535 691 LDLSYLLALKSI-YWKPLPFTYLKEMVVNGCDQLKKLPLDSSC-A-EERKFVIRGEA 744 (769)
Q Consensus 691 L~l~~c~~l~~~-~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~-~-~l~~~~i~~~~ 744 (769)
|++++| .++.+ |.....+++|+.|++++| +++.+|..... + +|+.+.+++++
T Consensus 502 L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 502 LNMSHN-NLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp EECCSS-CCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCC
T ss_pred EECCCC-cCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCC
Confidence 888886 45444 556667889999999888 58888877443 3 58888888654
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=1.3e-22 Score=231.28 Aligned_cols=267 Identities=17% Similarity=0.123 Sum_probs=142.1
Q ss_pred ccCCCCCCEEeccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCC
Q 039535 450 MSKLGSLELLDISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGG 529 (769)
Q Consensus 450 ~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 529 (769)
+..+++|++|++++|.++++|..+..+++|++|++++|. +..+++..+..+++|++|++++|....
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~------------- 339 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRL------------- 339 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCSCSSCC-------------
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCC-cCcCchhhhhccCcCCEEECCCCCccc-------------
Confidence 344455555555555555555555555555555555554 233322224455555555555554331
Q ss_pred ccchhhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccccceeecc-------
Q 039535 530 GEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHD------- 602 (769)
Q Consensus 530 ~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~------- 602 (769)
......+..+++|+.|+++.+.+...........-.++|+.|.++++......+ ..+..+++|++|++++
T Consensus 340 -~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~ 416 (606)
T 3t6q_A 340 -ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT--EAFKECPQLELLDLAFTRLKVKD 416 (606)
T ss_dssp -BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT--TTTTTCTTCSEEECTTCCEECCT
T ss_pred -ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH--HHhcCCccCCeEECCCCcCCCcc
Confidence 112223556666666666655543322111111223456666666554433322 3455566666666554
Q ss_pred -------ccCcceEeeeeeccccccCCC-ccccccceEeecCcccccc-c---ccccccCCccEEeecCChhhhhhhccC
Q 039535 603 -------CRGLEELKIDYTEIAQKRREP-FVFRSLRRVTMVSCHKLKD-L---TFLVFAPNLKSISLGDCDALEEIISVG 670 (769)
Q Consensus 603 -------~~~l~~l~l~~~~~~~~~~~~-~~~~~L~~L~L~~~~~l~~-l---~~l~~l~~L~~L~l~~~~~l~~~~~~~ 670 (769)
++.|+.+++++|.+.+..+.. ..+++|++|++++|..... + ..+..+++|++|++++|.. +
T Consensus 417 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l-~------ 489 (606)
T 3t6q_A 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL-S------ 489 (606)
T ss_dssp TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC-C------
T ss_pred cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc-C------
Confidence 235566666666655544432 4466666666666642221 1 2355566666666666532 1
Q ss_pred ccCCcccccCCCCCCCcccccccccccccccccCCCCCCCCcceEeecCCccCCCcCCCC-C-cccccceEEecccccc
Q 039535 671 KFAEVPEMMGHLSPFENLQNLDLSYLLALKSIYWKPLPFTYLKEMVVNGCDQLKKLPLDS-S-CAEERKFVIRGEAHWW 747 (769)
Q Consensus 671 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~-~-~~~l~~~~i~~~~~~~ 747 (769)
+++ ...+..+++|++|++++|..-...+.....+++| .|++++| +++.+|... . .++|+.+.+++++=.+
T Consensus 490 ---~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 490 ---SID--QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp ---EEC--TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred ---ccC--hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCCccc
Confidence 111 1245677889999999864333445556678888 8999888 555555433 2 2788888888665433
No 25
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=3.3e-23 Score=241.73 Aligned_cols=131 Identities=25% Similarity=0.363 Sum_probs=62.8
Q ss_pred CCcceeEEEEeecccc-ccC-CCCC-CCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccc-cCCcc-ccCC
Q 039535 379 GWENVRRLSLMQNQIK-VLS-EVPT-CPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVL-KLPLG-MSKL 453 (769)
Q Consensus 379 ~~~~l~~l~l~~~~~~-~~~-~~~~-~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~-~l~~~-~~~l 453 (769)
.+++++.|++++|.+. .++ .+.. +++|++|++++|. +....+..|.++++|++|++++| .+. .+|.. +..+
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n---~l~~~ip~~~l~~l 342 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH-FYGAVPPFFGSCSLLESLALSSN---NFSGELPMDTLLKM 342 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE-EEECCCGGGGGCTTCCEEECCSS---EEEEECCHHHHTTC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc-CCCccchHHhcCCCccEEECCCC---cccCcCCHHHHhcC
Confidence 4455556666555553 222 2222 3555555555554 32222223555555555555555 332 44433 4555
Q ss_pred CCCCEEeccCCCCC-ccchhhhcCC-CCceeeccCCCcccccchHHhcC--CCcCcEEEeeccCC
Q 039535 454 GSLELLDISHSSIE-ELPEELKLLV-NLKCLNLRWTDVLNKIPRQLISN--LSRVRVLRMFATGY 514 (769)
Q Consensus 454 ~~L~~L~l~~~~i~-~lp~~~~~l~-~L~~L~l~~~~~l~~lp~~~~~~--l~~L~~L~l~~~~~ 514 (769)
++|++|++++|.++ .+|..+..++ +|++|++++|...+.+|.. +.. +++|++|++++|.+
T Consensus 343 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~-~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN-LCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT-TTCSTTCCCCEEECCSSEE
T ss_pred CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh-hhhcccCCccEEECCCCcc
Confidence 55555555555555 4555554444 5555555555433333333 222 34444444444443
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=1.9e-21 Score=219.12 Aligned_cols=361 Identities=16% Similarity=0.129 Sum_probs=234.5
Q ss_pred eEEEEcCCccccCCCCCCCcceeEEEEeeccccccC--CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccC
Q 039535 362 NFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLS--EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIG 439 (769)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~ 439 (769)
..+.+.+.++..+|... .++++.|++++|.+..++ .+..+++|++|++++|. +..+++..|.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N- 110 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHN- 110 (562)
T ss_dssp CEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTS-
T ss_pred cEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCC-
Confidence 67888888899888633 389999999999997664 68999999999999997 77887778999999999999999
Q ss_pred ccccccCCccccCCCCCCEEeccCCCCCcc--chhhhcCCCCceeeccCCCcccccchHHhcCCCcC--cEEEeeccCC-
Q 039535 440 YFNVLKLPLGMSKLGSLELLDISHSSIEEL--PEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRV--RVLRMFATGY- 514 (769)
Q Consensus 440 ~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l--p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L--~~L~l~~~~~- 514 (769)
.+..+|.. .+++|++|++++|.++.+ |..++.+++|++|++++|. +.... +..+++| ++|++++|.+
T Consensus 111 --~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l~ 182 (562)
T 3a79_B 111 --RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSYH 182 (562)
T ss_dssp --CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSCC
T ss_pred --cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeeccccc
Confidence 77788866 799999999999999965 4789999999999999997 43322 5556666 9999999987
Q ss_pred -Cccccccccccc-----------cCCc----------------------------cchhhhhhcCCCceEEEEEeCChh
Q 039535 515 -DRFHEASEDSVL-----------FGGG----------------------------EVLIQELLGLKYLEVLELTLGSYH 554 (769)
Q Consensus 515 -~~~~~~~~~~~~-----------~~~~----------------------------~~~~~~l~~l~~L~~l~l~~~~~~ 554 (769)
............ ...+ ...+..+..+++|+.+++......
T Consensus 183 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~ 262 (562)
T 3a79_B 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262 (562)
T ss_dssp CCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEEC
T ss_pred ccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCc
Confidence 322111110000 0000 001122334444444444433221
Q ss_pred h--HHHHHhcccccccceeEEEeccCCCccccccccc-----ccc--------------------------ccccceeec
Q 039535 555 A--LQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAF-----ADL--------------------------KHLNELQIH 601 (769)
Q Consensus 555 ~--~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l-----~~~--------------------------~~L~~L~l~ 601 (769)
. +..+.... ...+++.|.++++......+. .+ ..+ .+|++|+++
T Consensus 263 ~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~--~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 263 WKCSVKLFQFF-WPRPVEYLNIYNLTITERIDR--EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp HHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCC--CCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEE
T ss_pred HHHHHHHHHhh-hcccccEEEEeccEeeccccc--hhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEcc
Confidence 1 11111111 113677787777653311110 11 111 234444443
Q ss_pred -----------cccCcceEeeeeeccccccC-CCccccccceEeecCcccccccc----cccccCCccEEeecCChhhhh
Q 039535 602 -----------DCRGLEELKIDYTEIAQKRR-EPFVFRSLRRVTMVSCHKLKDLT----FLVFAPNLKSISLGDCDALEE 665 (769)
Q Consensus 602 -----------~~~~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~l~~l~----~l~~l~~L~~L~l~~~~~l~~ 665 (769)
.++.|+.+++++|.+.+..+ ....+++|+.|++++| .++.++ .+..+++|+.|++++|..-..
T Consensus 340 ~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp SSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred CCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCc
Confidence 23566777777777766433 3355677777777777 355433 255677777777777643221
Q ss_pred hhc---------------cCccCCcccccCCCCCC-CcccccccccccccccccCCCCCCCCcceEeecCCccCCCcCCC
Q 039535 666 IIS---------------VGKFAEVPEMMGHLSPF-ENLQNLDLSYLLALKSIYWKPLPFTYLKEMVVNGCDQLKKLPLD 729 (769)
Q Consensus 666 ~~~---------------~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~ 729 (769)
++. .|.+++ .. ...+ ++|+.|++++| .++.+|.....+++|++|++++| +++.+|..
T Consensus 419 ~~~~~~~~l~~L~~L~l~~n~l~~--~~---~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~ 491 (562)
T 3a79_B 419 AYDRTCAWAESILVLNLSSNMLTG--SV---FRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDG 491 (562)
T ss_dssp CSSCCCCCCTTCCEEECCSSCCCG--GG---GSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTT
T ss_pred cChhhhcCcccCCEEECCCCCCCc--ch---hhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHH
Confidence 211 011110 00 1122 58999999996 88899887778999999999887 78899986
Q ss_pred -C-CcccccceEEeccc
Q 039535 730 -S-SCAEERKFVIRGEA 744 (769)
Q Consensus 730 -~-~~~~l~~~~i~~~~ 744 (769)
. ..++|+.+++++++
T Consensus 492 ~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 492 VFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp STTTCTTCCCEECCSCC
T ss_pred HHhcCCCCCEEEecCCC
Confidence 3 33889999998654
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=2e-22 Score=228.42 Aligned_cols=302 Identities=13% Similarity=0.136 Sum_probs=211.5
Q ss_pred CCcceeEEEEeeccccccCC--CCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCc-cccCCCC
Q 039535 379 GWENVRRLSLMQNQIKVLSE--VPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPL-GMSKLGS 455 (769)
Q Consensus 379 ~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~-~~~~l~~ 455 (769)
.+++++.+.+.++.+..++. +..+++|++|++++|. +..+++..|..+++|++|++++| .+..+|+ .++.+++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n---~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN---AIRYLPPHVFQNVPL 124 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSS---CCCCCCTTTTTTCTT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCC---cCCCCCHHHHcCCCC
Confidence 35678889999888866654 5778999999999887 77777767899999999999999 6666654 4688999
Q ss_pred CCEEeccCCCCCccchh-hhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchh
Q 039535 456 LELLDISHSSIEELPEE-LKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLI 534 (769)
Q Consensus 456 L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (769)
|++|++++|.++.+|.. ++.+++|++|++++|. +..+++..++.+++|++|++++|.+..+
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~----------------- 186 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHV----------------- 186 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBC-----------------
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCc-----------------
Confidence 99999999999988876 4789999999999997 5555554488899999999999887632
Q ss_pred hhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccccceeeccccCcceEeeeee
Q 039535 535 QELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGLEELKIDYT 614 (769)
Q Consensus 535 ~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~l~~~ 614 (769)
.++.+++|+.|+++.+.+..+ ....+++.|.++++....... . ..++|+.|+++ +|
T Consensus 187 -~~~~l~~L~~L~l~~n~l~~l-------~~~~~L~~L~ls~n~l~~~~~---~--~~~~L~~L~L~-----------~n 242 (597)
T 3oja_B 187 -DLSLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNSINVVRG---P--VNVELTILKLQ-----------HN 242 (597)
T ss_dssp -CGGGCTTCSEEECCSSCCSEE-------ECCTTCSEEECCSSCCCEEEC---S--CCSCCCEEECC-----------SS
T ss_pred -ChhhhhhhhhhhcccCccccc-------cCCchhheeeccCCccccccc---c--cCCCCCEEECC-----------CC
Confidence 245678888888876654321 223456667666654433322 1 11345555444 44
Q ss_pred ccccccCCCccccccceEeecCccccccc-c-cccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCcccccc
Q 039535 615 EIAQKRREPFVFRSLRRVTMVSCHKLKDL-T-FLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLD 692 (769)
Q Consensus 615 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~l-~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 692 (769)
.+.+. +....+++|+.|+|++|. ++.+ + .+..+++|+.|+|++|.. +++|. ....+++|+.|+
T Consensus 243 ~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l----------~~l~~---~~~~l~~L~~L~ 307 (597)
T 3oja_B 243 NLTDT-AWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRL----------VALNL---YGQPIPTLKVLD 307 (597)
T ss_dssp CCCCC-GGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSCC----------CEEEC---SSSCCTTCCEEE
T ss_pred CCCCC-hhhccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCCC----------CCCCc---ccccCCCCcEEE
Confidence 44332 333567888888888884 4443 2 467788888888887632 22222 234567888888
Q ss_pred cccccccccccCCCCCCCCcceEeecCCccCCCcCCCCCcccccceEEeccc
Q 039535 693 LSYLLALKSIYWKPLPFTYLKEMVVNGCDQLKKLPLDSSCAEERKFVIRGEA 744 (769)
Q Consensus 693 l~~c~~l~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~l~~~~i~~~~ 744 (769)
|++| .++.+|.....+++|+.|++++| +++.+| ....++|+.+.+++++
T Consensus 308 Ls~N-~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 308 LSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLK-LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCC-CCTTCCCSEEECCSSC
T ss_pred CCCC-CCCccCcccccCCCCCEEECCCC-CCCCcC-hhhcCCCCEEEeeCCC
Confidence 8885 66677766667788888888877 466666 3334677888877554
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=1.2e-22 Score=228.68 Aligned_cols=352 Identities=16% Similarity=0.169 Sum_probs=192.0
Q ss_pred EEEcCCccccC--CCCCCCcceeEEEEeeccccccC--CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccC
Q 039535 364 LVCAGAGLKEA--PDVKGWENVRRLSLMQNQIKVLS--EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIG 439 (769)
Q Consensus 364 ~~~~~~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~ 439 (769)
+...+..+..+ ..+..++++++|++++|.+..+. .+..+++|++|++++|. +..+++..|.++++|++|++++|
T Consensus 31 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n- 108 (549)
T 2z81_A 31 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGN- 108 (549)
T ss_dssp EECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTC-
T ss_pred EECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEEECCCC-
Confidence 33334344443 23556677777777777774443 36677777777777765 55566555677777777777777
Q ss_pred cccccc--CCccccCCCCCCEEeccCCC-CCccc-hhhhcCCCCceeeccCCCcccccchHHhcCC--------------
Q 039535 440 YFNVLK--LPLGMSKLGSLELLDISHSS-IEELP-EELKLLVNLKCLNLRWTDVLNKIPRQLISNL-------------- 501 (769)
Q Consensus 440 ~~~~~~--l~~~~~~l~~L~~L~l~~~~-i~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l-------------- 501 (769)
.+.. .|..++.+++|++|++++|. ++.+| ..+..+++|++|++++|...+..|.. ++.+
T Consensus 109 --~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 109 --PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp --CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSBST
T ss_pred --cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccCccc
Confidence 4432 34556667777777777775 44554 34666677777777666533333433 4444
Q ss_pred ----------CcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCChhh--HHHHHhcccc----
Q 039535 502 ----------SRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHA--LQILLSSNKL---- 565 (769)
Q Consensus 502 ----------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~--~~~l~~~~~~---- 565 (769)
++|++|++++|.+....... ......+++|+.|++..+.+.. ...+......
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSP------------LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCC------------CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred ccchhhHhhcccccEEEccCCccccccccc------------cchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence 45555555554443321000 0001112233333333222111 0111111111
Q ss_pred -------------------------------------------------------cccceeEEEeccCCCcccccccccc
Q 039535 566 -------------------------------------------------------KSCIRSLLLFGFRGTKYFIDATAFA 590 (769)
Q Consensus 566 -------------------------------------------------------~~~l~~L~l~~~~~~~~~~~~~~l~ 590 (769)
.++++.|.+.++....... ..+.
T Consensus 254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~--~~~~ 331 (549)
T 2z81_A 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC--SFSQ 331 (549)
T ss_dssp CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCH--HHHH
T ss_pred cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCH--HHHh
Confidence 1234444444433221111 1123
Q ss_pred ccccccceeeccc----------------cCcceEeeeeeccccccC---CCccccccceEeecCccccccccc-ccccC
Q 039535 591 DLKHLNELQIHDC----------------RGLEELKIDYTEIAQKRR---EPFVFRSLRRVTMVSCHKLKDLTF-LVFAP 650 (769)
Q Consensus 591 ~~~~L~~L~l~~~----------------~~l~~l~l~~~~~~~~~~---~~~~~~~L~~L~L~~~~~l~~l~~-l~~l~ 650 (769)
.+++|++|+++++ ++|+.|++++|.+.++++ ....+++|++|++++| .++.++. +..++
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~ 410 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPE 410 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccc
Confidence 4566666666542 356666666666654432 1345667777777777 3455443 55566
Q ss_pred CccEEeecCChhhhhh------------hccCccCCcccccCCCCCCCcccccccccccccccccCCCCCCCCcceEeec
Q 039535 651 NLKSISLGDCDALEEI------------ISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALKSIYWKPLPFTYLKEMVVN 718 (769)
Q Consensus 651 ~L~~L~l~~~~~l~~~------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~ 718 (769)
+|++|++++|. ++.+ +..|.++++ ...+++|++|++++| .++.+|. ...+++|+.|+++
T Consensus 411 ~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~------~~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls 481 (549)
T 2z81_A 411 KMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSF------SLFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKIS 481 (549)
T ss_dssp TCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCC------CCCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECC
T ss_pred cccEEECCCCC-cccccchhcCCceEEECCCCChhhh------cccCChhcEEECCCC-ccCcCCC-cccCccCCEEecC
Confidence 77777777664 2111 111222221 236789999999995 7788876 3468999999998
Q ss_pred CCccCCCcCCCC--CcccccceEEecccc
Q 039535 719 GCDQLKKLPLDS--SCAEERKFVIRGEAH 745 (769)
Q Consensus 719 ~C~~L~~lp~~~--~~~~l~~~~i~~~~~ 745 (769)
+| +++.+|... ..++|+.+++++++=
T Consensus 482 ~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 482 RN-QLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp SS-CCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred CC-ccCCcCHHHHhcCcccCEEEecCCCc
Confidence 87 777777653 338899999987763
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=2.2e-22 Score=215.94 Aligned_cols=284 Identities=16% Similarity=0.196 Sum_probs=218.6
Q ss_pred CCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCC-ccccCCCCCCEEeccCCCCCccc-hhhhcCCC
Q 039535 401 TCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLP-LGMSKLGSLELLDISHSSIEELP-EELKLLVN 478 (769)
Q Consensus 401 ~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~ 478 (769)
.+.+++.|++++|. +..+|..+|..+++|++|++++| .+..++ ..+..+++|++|++++|.++.++ ..+..+++
T Consensus 43 ~l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n---~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDL---QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp GGCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTS---CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccCCceEEEecCCc-hhhCChhHhcccccCcEEECCCC---cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 46899999999886 88999888999999999999999 666665 47889999999999999999775 45889999
Q ss_pred CceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCChhhHHH
Q 039535 479 LKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQI 558 (769)
Q Consensus 479 L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~ 558 (769)
|++|++++|. +..+|..++.++++|++|++++|.+.. ..+..+..+++|+.|+++.+.+....
T Consensus 119 L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~---------------~~~~~~~~l~~L~~L~l~~n~l~~~~- 181 (390)
T 3o6n_A 119 LTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLER---------------IEDDTFQATTSLQNLQLSSNRLTHVD- 181 (390)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCB---------------CCTTTTSSCTTCCEEECCSSCCSBCC-
T ss_pred CCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCc---------------cChhhccCCCCCCEEECCCCcCCccc-
Confidence 9999999997 778988767899999999999998763 24456788999999999877654321
Q ss_pred HHhcccccccceeEEEeccCCCccccccccccccccccceeeccccCcceEeeeeeccccccCCCccccccceEeecCcc
Q 039535 559 LLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGLEELKIDYTEIAQKRREPFVFRSLRRVTMVSCH 638 (769)
Q Consensus 559 l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~ 638 (769)
....++++.|.++++... .+...++| +.+++++|.+...+.. .+++|+.|++++|
T Consensus 182 ----~~~l~~L~~L~l~~n~l~-------~~~~~~~L-----------~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n- 236 (390)
T 3o6n_A 182 ----LSLIPSLFHANVSYNLLS-------TLAIPIAV-----------EELDASHNSINVVRGP--VNVELTILKLQHN- 236 (390)
T ss_dssp ----GGGCTTCSEEECCSSCCS-------EEECCSSC-----------SEEECCSSCCCEEECC--CCSSCCEEECCSS-
T ss_pred ----cccccccceeeccccccc-------ccCCCCcc-----------eEEECCCCeeeecccc--ccccccEEECCCC-
Confidence 122345556655544221 12222344 4445555554444332 3689999999999
Q ss_pred cccccccccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCcccccccccccccccccCCCCCCCCcceEeec
Q 039535 639 KLKDLTFLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALKSIYWKPLPFTYLKEMVVN 718 (769)
Q Consensus 639 ~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~ 718 (769)
.++..+.+..+++|+.|++++|.. +.+. |. .+..+++|++|++++| .++.++.....+++|+.|+++
T Consensus 237 ~l~~~~~l~~l~~L~~L~Ls~n~l-~~~~--------~~---~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 237 NLTDTAWLLNYPGLVEVDLSYNEL-EKIM--------YH---PFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLS 303 (390)
T ss_dssp CCCCCGGGGGCTTCSEEECCSSCC-CEEE--------SG---GGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECC
T ss_pred CCcccHHHcCCCCccEEECCCCcC-CCcC--------hh---HccccccCCEEECCCC-cCcccCcccCCCCCCCEEECC
Confidence 577888899999999999999743 2211 11 3456789999999995 888888777789999999999
Q ss_pred CCccCCCcCCCCCc-ccccceEEeccc
Q 039535 719 GCDQLKKLPLDSSC-AEERKFVIRGEA 744 (769)
Q Consensus 719 ~C~~L~~lp~~~~~-~~l~~~~i~~~~ 744 (769)
+| +++.+|..... ++|+.+.++++.
T Consensus 304 ~n-~l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 304 HN-HLLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp SS-CCCCCGGGHHHHTTCSEEECCSSC
T ss_pred CC-cceecCccccccCcCCEEECCCCc
Confidence 98 78888865533 889999998765
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=5.5e-22 Score=229.37 Aligned_cols=151 Identities=21% Similarity=0.255 Sum_probs=123.8
Q ss_pred ceEEEEcCCccccCCCCCCCcceeEEEEeeccccccC--CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeecc
Q 039535 361 INFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLS--EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNI 438 (769)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~ 438 (769)
...+.+.+.++..+|... .++++.|++++|.+..++ .+.++++|++|++++|. +..+++..|.++++|++|++++|
T Consensus 6 ~~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 6 HEVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SSEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSS
T ss_pred CCeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCC
Confidence 356788888888888633 378999999999986654 47889999999999887 77777777999999999999999
Q ss_pred CccccccCCc-cccCCCCCCEEeccCCCCCccc-hhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCc
Q 039535 439 GYFNVLKLPL-GMSKLGSLELLDISHSSIEELP-EELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDR 516 (769)
Q Consensus 439 ~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~ 516 (769)
.+..+|. .+.++++|++|++++|+++.++ ..++.+++|++|++++|.. ...++..++++++|++|++++|.+..
T Consensus 84 ---~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 84 ---ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL-SSTKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp ---CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCC-SCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred ---ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcc-cccCchhhcccccCCEEEccCCcccc
Confidence 7777776 5889999999999999999776 5688999999999999974 44433337889999999999988764
Q ss_pred c
Q 039535 517 F 517 (769)
Q Consensus 517 ~ 517 (769)
+
T Consensus 160 ~ 160 (680)
T 1ziw_A 160 L 160 (680)
T ss_dssp B
T ss_pred c
Confidence 3
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=5.7e-22 Score=215.91 Aligned_cols=301 Identities=15% Similarity=0.153 Sum_probs=178.8
Q ss_pred ceEEEEcCCccccCCCCCCCcceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCc
Q 039535 361 INFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGY 440 (769)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~ 440 (769)
...+...+..+.+++.+..+++++.|++++|.+..++ +..+++|++|++++|. +..++ +..+++|++|++++|
T Consensus 44 L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~-l~~~~---~~~l~~L~~L~L~~N-- 116 (457)
T 3bz5_A 44 LTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNK-LTNLD---VTPLTKLTYLNCDTN-- 116 (457)
T ss_dssp CCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSC-CSCCC---CTTCTTCCEEECCSS--
T ss_pred CCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCC-Cceee---cCCCCcCCEEECCCC--
Confidence 3445555555666666666667777777777665553 6666777777777665 44442 566777777777776
Q ss_pred cccccCCccccCCCCCCEEeccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccc
Q 039535 441 FNVLKLPLGMSKLGSLELLDISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEA 520 (769)
Q Consensus 441 ~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~ 520 (769)
.+..+| ++.+++|++|++++|+++.++ ++.+++|++|++++|..++.++ ++.+++|++|++++|.+..+
T Consensus 117 -~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l--- 185 (457)
T 3bz5_A 117 -KLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITEL--- 185 (457)
T ss_dssp -CCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCC---
T ss_pred -cCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcccee---
Confidence 444443 566677777777777666653 5666777777777775555553 55667777777777665521
Q ss_pred cccccccCCccchhhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccccceee
Q 039535 521 SEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQI 600 (769)
Q Consensus 521 ~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l 600 (769)
+ +..+++|+.|+++.+.+..+. ....++|+.|.++++..... .+..++
T Consensus 186 -------------~--l~~l~~L~~L~l~~N~l~~~~-----l~~l~~L~~L~Ls~N~l~~i-----p~~~l~------- 233 (457)
T 3bz5_A 186 -------------D--VSQNKLLNRLNCDTNNITKLD-----LNQNIQLTFLDCSSNKLTEI-----DVTPLT------- 233 (457)
T ss_dssp -------------C--CTTCTTCCEEECCSSCCSCCC-----CTTCTTCSEEECCSSCCSCC-----CCTTCT-------
T ss_pred -------------c--cccCCCCCEEECcCCcCCeec-----cccCCCCCEEECcCCccccc-----CccccC-------
Confidence 1 456666777776666554431 12234555666555433321 133334
Q ss_pred ccccCcceEeeeeeccccccCCCcccc----------ccceEeecCcccccccccccccCCccEEeecCChhhhhhhcc-
Q 039535 601 HDCRGLEELKIDYTEIAQKRREPFVFR----------SLRRVTMVSCHKLKDLTFLVFAPNLKSISLGDCDALEEIISV- 669 (769)
Q Consensus 601 ~~~~~l~~l~l~~~~~~~~~~~~~~~~----------~L~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~- 669 (769)
.|+.+++++|.+.+.++. .++ +|+.|++++|..+..++ .+.+++|+.|++++|..++.++..
T Consensus 234 ----~L~~L~l~~N~l~~~~~~--~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~ 306 (457)
T 3bz5_A 234 ----QLTYFDCSVNPLTELDVS--TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQA 306 (457)
T ss_dssp ----TCSEEECCSSCCSCCCCT--TCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTT
T ss_pred ----CCCEEEeeCCcCCCcCHH--HCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCC
Confidence 444444455544443321 233 45566666665555554 466788999999888776655321
Q ss_pred CccCCcccccCCCCCCCcccccccccccccccccCCCCCCCCcceEeecCCccCCCcC
Q 039535 670 GKFAEVPEMMGHLSPFENLQNLDLSYLLALKSIYWKPLPFTYLKEMVVNGCDQLKKLP 727 (769)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~C~~L~~lp 727 (769)
+.+..+ .+..+++|+.|++++| .++.++ ...+++|+.|+++++ +++.+|
T Consensus 307 ~~L~~L-----~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N-~l~~l~ 355 (457)
T 3bz5_A 307 AGITEL-----DLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNA-HIQDFS 355 (457)
T ss_dssp CCCSCC-----CCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSS-CCCBCT
T ss_pred CcceEe-----chhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCC-CCCCcc
Confidence 111111 2556678888888874 666664 556788888888764 555544
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=218.42 Aligned_cols=341 Identities=16% Similarity=0.131 Sum_probs=195.4
Q ss_pred ceEEEEcCCccccCC--CCCCCcceeEEEEeecccccc--CCCCCCCCceEEEeecccchhcccCcccccCCcccEEEee
Q 039535 361 INFLVCAGAGLKEAP--DVKGWENVRRLSLMQNQIKVL--SEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKIS 436 (769)
Q Consensus 361 ~~~~~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~ 436 (769)
...+...+..+..++ .+..+++++.|++++|.+..+ ..+..+++|++|++++|. +..+|.. .+++|++|+++
T Consensus 23 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~---~l~~L~~L~L~ 98 (520)
T 2z7x_B 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCH---PTVNLKHLDLS 98 (520)
T ss_dssp CSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC---CCCCCSEEECC
T ss_pred ccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCcc---ccCCccEEecc
Confidence 344555555555554 356778888888888888554 357888888888888886 6677764 68888888888
Q ss_pred ccCcccccc--CCccccCCCCCCEEeccCCCCCccchhhhcCCCC--ceeeccCCCc--ccccchH--------------
Q 039535 437 NIGYFNVLK--LPLGMSKLGSLELLDISHSSIEELPEELKLLVNL--KCLNLRWTDV--LNKIPRQ-------------- 496 (769)
Q Consensus 437 ~~~~~~~~~--l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L--~~L~l~~~~~--l~~lp~~-------------- 496 (769)
+| .+.. +|..++.+++|++|++++|.++. ..+..+++| ++|++++|.. ....|..
T Consensus 99 ~N---~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 99 FN---AFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp SS---CCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred CC---ccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence 88 5443 46778888888888888887764 245566666 7777777654 2222221
Q ss_pred -----------H------------------------------hcCCCcCcEEEeeccCCCccc------------ccccc
Q 039535 497 -----------L------------------------------ISNLSRVRVLRMFATGYDRFH------------EASED 523 (769)
Q Consensus 497 -----------~------------------------------~~~l~~L~~L~l~~~~~~~~~------------~~~~~ 523 (769)
. ++.+++|++|++.+|.+.... ...++
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 0 222333333333322211000 00000
Q ss_pred ccccCCccchhhhh-----hcCCCceEEEEEeCCh----hhHHHHHhcccccccceeEEEeccCCCcccccccccccccc
Q 039535 524 SVLFGGGEVLIQEL-----LGLKYLEVLELTLGSY----HALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKH 594 (769)
Q Consensus 524 ~~~~~~~~~~~~~l-----~~l~~L~~l~l~~~~~----~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~ 594 (769)
.....-.+..+..+ ..+++|+.++++.+.+ ..+..+... .+++.|.++++...... ....+++
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~----~~L~~L~l~~n~l~~~~----~~~~l~~ 325 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSN----MNIKNFTVSGTRMVHML----CPSKISP 325 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHT----CCCSEEEEESSCCCCCC----CCSSCCC
T ss_pred eecccccCccccchhhcccccCceeEeccccccceecchhhhhccccc----CceeEEEcCCCcccccc----chhhCCc
Confidence 00000001233333 5667777777776654 111111111 23556666555432221 1245566
Q ss_pred ccceeecc-------------ccCcceEeeeeecccccc---CCCccccccceEeecCcccccc-ccc--ccccCCccEE
Q 039535 595 LNELQIHD-------------CRGLEELKIDYTEIAQKR---REPFVFRSLRRVTMVSCHKLKD-LTF--LVFAPNLKSI 655 (769)
Q Consensus 595 L~~L~l~~-------------~~~l~~l~l~~~~~~~~~---~~~~~~~~L~~L~L~~~~~l~~-l~~--l~~l~~L~~L 655 (769)
|++|++++ ++.|+.|++++|.+.++. .....+++|+.|++++|. ++. ++. +..+++|+.|
T Consensus 326 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~L 404 (520)
T 2z7x_B 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGDCSWTKSLLSL 404 (520)
T ss_dssp CCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCSCCCCTTCCEE
T ss_pred ccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccccchhccCccCCEE
Confidence 66666554 245666666666665422 122456667777777664 333 442 4556666666
Q ss_pred eecCChhhhh-----------h-hccCccCCcccccCCCCCCCcccccccccccccccccCC-CCCCCCcceEeecCCcc
Q 039535 656 SLGDCDALEE-----------I-ISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALKSIYWK-PLPFTYLKEMVVNGCDQ 722 (769)
Q Consensus 656 ~l~~~~~l~~-----------~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~i~~C~~ 722 (769)
++++|..-.. + +..|.++.+|..+. .+++|++|++++| .++.+|.. ...+++|+.|++++++-
T Consensus 405 ~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~---~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 405 NMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVV---KLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp ECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGG---GCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECcCCCCCcchhhhhcccCCEEECCCCcccccchhhh---cCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCC
Confidence 6666632211 1 22334455555543 6789999999996 88888876 56789999999998854
Q ss_pred C
Q 039535 723 L 723 (769)
Q Consensus 723 L 723 (769)
-
T Consensus 481 ~ 481 (520)
T 2z7x_B 481 D 481 (520)
T ss_dssp C
T ss_pred c
Confidence 3
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=2.6e-21 Score=228.18 Aligned_cols=302 Identities=14% Similarity=0.161 Sum_probs=193.0
Q ss_pred EEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccC-CccccCCCCCCEEeccC
Q 039535 385 RLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKL-PLGMSKLGSLELLDISH 463 (769)
Q Consensus 385 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l-~~~~~~l~~L~~L~l~~ 463 (769)
..+.+++.+..++. ..++|++|++++|. +..+.+..|.++++|++|++++|. ....+ |..+.++++|++|++++
T Consensus 8 ~~dcs~~~L~~vP~--lp~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~--~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ--VLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQY--TPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEESCCCSSCCCS--SCTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTC--CCCEECTTTTSSCTTCCEEECTT
T ss_pred EEEccCCCCCCCCC--CCCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCC--CccccCHHHhcCCCCCCEEECCC
Confidence 45556667766665 56899999999997 777777779999999999999995 34455 67789999999999999
Q ss_pred CCCCcc-chhhhcCCCCceeeccCCCcccccch-HHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCC
Q 039535 464 SSIEEL-PEELKLLVNLKCLNLRWTDVLNKIPR-QLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLK 541 (769)
Q Consensus 464 ~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 541 (769)
|.++.+ |..+..+++|++|++++|.....+|. ..++++++|++|++++|.+... .....+++++
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~--------------~~~~~~~~L~ 148 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL--------------YLHPSFGKLN 148 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC--------------CCCGGGGTCS
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc--------------ccchhHhhCC
Confidence 999965 77899999999999999985554443 3478999999999999998742 2335688999
Q ss_pred CceEEEEEeCChhh-----HHHHHhcccccccceeEEEeccCCCcccccccccccccc------ccceeeccc-------
Q 039535 542 YLEVLELTLGSYHA-----LQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKH------LNELQIHDC------- 603 (769)
Q Consensus 542 ~L~~l~l~~~~~~~-----~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~------L~~L~l~~~------- 603 (769)
+|+.|+++.+.+.. +..+.. .+|+.|.+.++......+ ..+..+++ |++|+++++
T Consensus 149 ~L~~L~Ls~N~i~~~~~~~l~~l~~-----~~L~~L~L~~n~l~~~~~--~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 221 (844)
T 3j0a_A 149 SLKSIDFSSNQIFLVCEHELEPLQG-----KTLSFFSLAANSLYSRVS--VDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221 (844)
T ss_dssp SCCEEEEESSCCCCCCSGGGHHHHH-----CSSCCCEECCSBSCCCCC--CCCCSSSCTTTTCCBSEEBCSSCCSSTTTT
T ss_pred CCCEEECCCCcCCeeCHHHcccccC-----CccceEECCCCccccccc--cchhhcCCccccCceeEEecCCCcCchhHH
Confidence 99999999876532 222210 345555655543332211 11222222 444444433
Q ss_pred --------------------------------------------cCcceEeeeeeccccccCCC-ccccccceEeecCcc
Q 039535 604 --------------------------------------------RGLEELKIDYTEIAQKRREP-FVFRSLRRVTMVSCH 638 (769)
Q Consensus 604 --------------------------------------------~~l~~l~l~~~~~~~~~~~~-~~~~~L~~L~L~~~~ 638 (769)
++++.+++++|.+.+..+.. ..+++|+.|+|++|.
T Consensus 222 ~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 301 (844)
T 3j0a_A 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301 (844)
T ss_dssp SGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC
T ss_pred HHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc
Confidence 34556666666655544432 445666666666663
Q ss_pred cccccc--cccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCcccccccccccccccccCC-CCCCCCcceE
Q 039535 639 KLKDLT--FLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALKSIYWK-PLPFTYLKEM 715 (769)
Q Consensus 639 ~l~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L 715 (769)
++.+. .+..+++|++|+|++|.. +.+ + ...+..+++|+.|++++| .++.++.. ...+++|+.|
T Consensus 302 -i~~~~~~~~~~l~~L~~L~Ls~N~l-~~~---------~--~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L 367 (844)
T 3j0a_A 302 -INKIADEAFYGLDNLQVLNLSYNLL-GEL---------Y--SSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTL 367 (844)
T ss_dssp -CCEECTTTTTTCSSCCEEEEESCCC-SCC---------C--SCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEE
T ss_pred -CCCCChHHhcCCCCCCEEECCCCCC-Ccc---------C--HHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEE
Confidence 33332 355566666666666532 111 0 013344556666666664 44444432 3345566666
Q ss_pred eecCCccCCCcC
Q 039535 716 VVNGCDQLKKLP 727 (769)
Q Consensus 716 ~i~~C~~L~~lp 727 (769)
++++| .++.++
T Consensus 368 ~Ls~N-~l~~i~ 378 (844)
T 3j0a_A 368 DLRDN-ALTTIH 378 (844)
T ss_dssp EEETC-CSCCCS
T ss_pred ECCCC-CCCccc
Confidence 66554 344333
No 34
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=221.05 Aligned_cols=365 Identities=18% Similarity=0.145 Sum_probs=254.9
Q ss_pred eEEEEcCCccccCC--CCCCCcceeEEEEeeccccccC--CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeec
Q 039535 362 NFLVCAGAGLKEAP--DVKGWENVRRLSLMQNQIKVLS--EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISN 437 (769)
Q Consensus 362 ~~~~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~ 437 (769)
..+..++..+..++ .+..+++++.|++++|.+..++ .+.++++|++|++++|. +..+++..|.++++|++|++++
T Consensus 31 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~ 109 (570)
T 2z63_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVE 109 (570)
T ss_dssp CEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCccccccccccc
Confidence 34555555555553 4677889999999999886554 47889999999999887 7778777799999999999999
Q ss_pred cCccccccCCc-cccCCCCCCEEeccCCCCCc--cchhhhcCCCCceeeccCCCcccccchHHhcCCCcC----cEEEee
Q 039535 438 IGYFNVLKLPL-GMSKLGSLELLDISHSSIEE--LPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRV----RVLRMF 510 (769)
Q Consensus 438 ~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L----~~L~l~ 510 (769)
| .+..++. .++.+++|++|++++|.++. +|..++.+++|++|++++|. +..+++..++.+.+| .+|+++
T Consensus 110 n---~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 110 T---NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp S---CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECT
T ss_pred c---ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccC
Confidence 9 6666654 58899999999999999884 68889999999999999997 455544336666666 677777
Q ss_pred ccCCCccccccccc----------c-----------------------------------cc------------------
Q 039535 511 ATGYDRFHEASEDS----------V-----------------------------------LF------------------ 527 (769)
Q Consensus 511 ~~~~~~~~~~~~~~----------~-----------------------------------~~------------------ 527 (769)
+|.+..+....... + +.
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 77655432211100 0 00
Q ss_pred ---CCccchhhhhhcCCCceEEEEEeCChhhHHHHHhc---------------------------------------ccc
Q 039535 528 ---GGGEVLIQELLGLKYLEVLELTLGSYHALQILLSS---------------------------------------NKL 565 (769)
Q Consensus 528 ---~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~---------------------------------------~~~ 565 (769)
......+..+..+++|+.|+++.+.+..++..... ...
T Consensus 266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (570)
T 2z63_A 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 345 (570)
T ss_dssp ETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCB
T ss_pred cchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccccc
Confidence 00111223445556666666654433221111000 022
Q ss_pred cccceeEEEeccCCCccccccccccccccccceeecc------------ccCcceEeeeeeccccccC--CCccccccce
Q 039535 566 KSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHD------------CRGLEELKIDYTEIAQKRR--EPFVFRSLRR 631 (769)
Q Consensus 566 ~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~------------~~~l~~l~l~~~~~~~~~~--~~~~~~~L~~ 631 (769)
.++|+.|.++++...........+..+++|++|++++ +++|+.+++++|.+.+..+ ....+++|++
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 4567777777765544322224677889999999876 4688999999999887765 3467899999
Q ss_pred EeecCcccccccc-cccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCcccccccccccccccc-cCCCCCC
Q 039535 632 VTMVSCHKLKDLT-FLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALKSI-YWKPLPF 709 (769)
Q Consensus 632 L~L~~~~~l~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~~~~ 709 (769)
|++++|......+ .+..+++|+.|++++|...+.. +| ..+..+++|++|++++| .++.+ +.....+
T Consensus 426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~p---~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l 493 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF--------LP---DIFTELRNLTFLDLSQC-QLEQLSPTAFNSL 493 (570)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE--------EC---SCCTTCTTCCEEECTTS-CCCEECTTTTTTC
T ss_pred EeCcCCcccccchhhhhcCCcCcEEECcCCcCcccc--------ch---hhhhcccCCCEEECCCC-ccccCChhhhhcc
Confidence 9999996444333 4778999999999998653221 22 25667889999999997 56555 6666789
Q ss_pred CCcceEeecCCccCCCcCCCC--CcccccceEEeccc
Q 039535 710 TYLKEMVVNGCDQLKKLPLDS--SCAEERKFVIRGEA 744 (769)
Q Consensus 710 ~~L~~L~i~~C~~L~~lp~~~--~~~~l~~~~i~~~~ 744 (769)
++|++|++++| +++.+|... ..++|+.+++++++
T Consensus 494 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 494 SSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 99999999998 788877543 33889999999654
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=7.4e-22 Score=223.66 Aligned_cols=284 Identities=15% Similarity=0.189 Sum_probs=218.7
Q ss_pred CCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCC-ccccCCCCCCEEeccCCCCCccchh-hhcCCC
Q 039535 401 TCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLP-LGMSKLGSLELLDISHSSIEELPEE-LKLLVN 478 (769)
Q Consensus 401 ~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~ 478 (769)
.+.+++.|++++|. +..+|+.+|..+++|++|++++| .+..++ ..++.+++|++|++++|.++.+|.. ++.+++
T Consensus 49 ~l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n---~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 49 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDL---QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp GGCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTS---CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCC---CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 36789999999886 88999988999999999999999 666665 4789999999999999999977654 689999
Q ss_pred CceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCChhhHHH
Q 039535 479 LKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQI 558 (769)
Q Consensus 479 L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~ 558 (769)
|++|++++|. +..+|..+++++++|++|++++|.+.. ..+..++.+++|+.|+++.+.+....
T Consensus 125 L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~---------------~~~~~~~~l~~L~~L~L~~N~l~~~~- 187 (597)
T 3oja_B 125 LTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLER---------------IEDDTFQATTSLQNLQLSSNRLTHVD- 187 (597)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCB---------------CCTTTTTTCTTCCEEECTTSCCSBCC-
T ss_pred CCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCC---------------CChhhhhcCCcCcEEECcCCCCCCcC-
Confidence 9999999997 778888767999999999999998763 34556889999999999877654421
Q ss_pred HHhcccccccceeEEEeccCCCccccccccccccccccceeeccccCcceEeeeeeccccccCCCccccccceEeecCcc
Q 039535 559 LLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGLEELKIDYTEIAQKRREPFVFRSLRRVTMVSCH 638 (769)
Q Consensus 559 l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~ 638 (769)
....++++.|.++++... .+...++| +.+++++|.+..+++. .+++|+.|+|++|
T Consensus 188 ----~~~l~~L~~L~l~~n~l~-------~l~~~~~L-----------~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n- 242 (597)
T 3oja_B 188 ----LSLIPSLFHANVSYNLLS-------TLAIPIAV-----------EELDASHNSINVVRGP--VNVELTILKLQHN- 242 (597)
T ss_dssp ----GGGCTTCSEEECCSSCCS-------EEECCTTC-----------SEEECCSSCCCEEECS--CCSCCCEEECCSS-
T ss_pred ----hhhhhhhhhhhcccCccc-------cccCCchh-----------heeeccCCcccccccc--cCCCCCEEECCCC-
Confidence 122345566655544221 12223344 4445555554444333 3479999999999
Q ss_pred cccccccccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCcccccccccccccccccCCCCCCCCcceEeec
Q 039535 639 KLKDLTFLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALKSIYWKPLPFTYLKEMVVN 718 (769)
Q Consensus 639 ~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~ 718 (769)
.++.++.+..+++|+.|+|++|..- .+ .|. .+..+++|+.|+|++| .++.++.....+++|+.|+++
T Consensus 243 ~l~~~~~l~~l~~L~~L~Ls~N~l~-~~--------~~~---~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls 309 (597)
T 3oja_B 243 NLTDTAWLLNYPGLVEVDLSYNELE-KI--------MYH---PFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLS 309 (597)
T ss_dssp CCCCCGGGGGCTTCSEEECCSSCCC-EE--------ESG---GGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECC
T ss_pred CCCCChhhccCCCCCEEECCCCccC-CC--------CHH---HhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECC
Confidence 5777888999999999999997532 21 112 3457789999999995 888888877789999999999
Q ss_pred CCccCCCcCCCCCc-ccccceEEeccc
Q 039535 719 GCDQLKKLPLDSSC-AEERKFVIRGEA 744 (769)
Q Consensus 719 ~C~~L~~lp~~~~~-~~l~~~~i~~~~ 744 (769)
+| .++.+|..... ++|+.+.++++.
T Consensus 310 ~N-~l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 310 HN-HLLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp SS-CCCCCGGGHHHHTTCSEEECCSSC
T ss_pred CC-CCCccCcccccCCCCCEEECCCCC
Confidence 88 67788865543 889999998765
No 36
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=6.1e-21 Score=209.44 Aligned_cols=342 Identities=17% Similarity=0.207 Sum_probs=242.3
Q ss_pred ceEEEEcCCccccC--CCCCCCcceeEEEEeecccc-cc--CCCCCCCCceEEEeecccchhcccCcccccCCcccEEEe
Q 039535 361 INFLVCAGAGLKEA--PDVKGWENVRRLSLMQNQIK-VL--SEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKI 435 (769)
Q Consensus 361 ~~~~~~~~~~~~~~--~~~~~~~~l~~l~l~~~~~~-~~--~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l 435 (769)
...+...+..+..+ ..+..+++|+.|++++|.+. .+ ..+.++++|++|++++|. +..+++..|.++++|++|++
T Consensus 32 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L 110 (455)
T 3v47_A 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLANLEVLTL 110 (455)
T ss_dssp CCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTTTCTTCCEEEC
T ss_pred cCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhccCcccCCEEeC
Confidence 34455555555554 34678899999999999874 33 357899999999999998 67776667999999999999
Q ss_pred eccCcccccc-CCcc--ccCCCCCCEEeccCCCCCcc-chh-hhcCCCCceeeccCCCcccccchHHhcCC--CcCcEEE
Q 039535 436 SNIGYFNVLK-LPLG--MSKLGSLELLDISHSSIEEL-PEE-LKLLVNLKCLNLRWTDVLNKIPRQLISNL--SRVRVLR 508 (769)
Q Consensus 436 ~~~~~~~~~~-l~~~--~~~l~~L~~L~l~~~~i~~l-p~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~l--~~L~~L~ 508 (769)
++| .+.. ++.. +..+++|++|++++|.++.+ |.. +..+++|++|++++|......+.. +..+ .+|+.|+
T Consensus 111 ~~n---~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~L~~L~ 186 (455)
T 3v47_A 111 TQC---NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-LLNFQGKHFTLLR 186 (455)
T ss_dssp TTS---CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGGGTTCEEEEEE
T ss_pred CCC---CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh-hhccccccccccc
Confidence 999 5443 2333 78899999999999999966 554 789999999999999844444443 6655 7899999
Q ss_pred eeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCChhhHH-HHHhcccccccceeEEEeccCCCcccccc-
Q 039535 509 MFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQ-ILLSSNKLKSCIRSLLLFGFRGTKYFIDA- 586 (769)
Q Consensus 509 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~-~l~~~~~~~~~l~~L~l~~~~~~~~~~~~- 586 (769)
+++|....+..... .......+..+++|+.|+++.+.+.... ..........+++.|.+.++.........
T Consensus 187 l~~n~l~~~~~~~~-------~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 259 (455)
T 3v47_A 187 LSSITLQDMNEYWL-------GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259 (455)
T ss_dssp CTTCBCTTCSTTCT-------THHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred cccCcccccchhhc-------cccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchh
Confidence 99998775421110 0111223446788999999988764322 22222222356788887766432211100
Q ss_pred -------cccc--ccccccceeecc-------------ccCcceEeeeeeccccccCC-CccccccceEeecCccccccc
Q 039535 587 -------TAFA--DLKHLNELQIHD-------------CRGLEELKIDYTEIAQKRRE-PFVFRSLRRVTMVSCHKLKDL 643 (769)
Q Consensus 587 -------~~l~--~~~~L~~L~l~~-------------~~~l~~l~l~~~~~~~~~~~-~~~~~~L~~L~L~~~~~l~~l 643 (769)
..+. ..++|++|++++ +++|+.|++++|.+.+..+. ...+++|++|+|++|. ++.+
T Consensus 260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~ 338 (455)
T 3v47_A 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSI 338 (455)
T ss_dssp SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEE
T ss_pred hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCc
Confidence 0111 125778887765 46788889999988887664 3678999999999994 5655
Q ss_pred c--cccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCcccccccccccccccccCCC-CCCCCcceEeecCC
Q 039535 644 T--FLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALKSIYWKP-LPFTYLKEMVVNGC 720 (769)
Q Consensus 644 ~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~i~~C 720 (769)
+ .+..+++|++|+|++|.. +.+. | ..+..+++|++|++++| .++.++... ..+++|+.|++++|
T Consensus 339 ~~~~~~~l~~L~~L~Ls~N~l-~~~~--------~---~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 339 DSRMFENLDKLEVLDLSYNHI-RALG--------D---QSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CGGGGTTCTTCCEEECCSSCC-CEEC--------T---TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ChhHhcCcccCCEEECCCCcc-cccC--------h---hhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCC
Confidence 3 478899999999999843 2221 1 24567889999999995 788887654 57899999999998
Q ss_pred ccCCCcCC
Q 039535 721 DQLKKLPL 728 (769)
Q Consensus 721 ~~L~~lp~ 728 (769)
+--...|.
T Consensus 406 ~l~~~~~~ 413 (455)
T 3v47_A 406 PWDCSCPR 413 (455)
T ss_dssp CBCCCTTT
T ss_pred CcccCCCc
Confidence 66555553
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=1.1e-20 Score=218.61 Aligned_cols=373 Identities=18% Similarity=0.145 Sum_probs=213.2
Q ss_pred ceEEEEcCCccccCCC--CCCCcceeEEEEeeccccccC--CCCCCCCceEEEeecccchhcccCcccccCCcccEEEee
Q 039535 361 INFLVCAGAGLKEAPD--VKGWENVRRLSLMQNQIKVLS--EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKIS 436 (769)
Q Consensus 361 ~~~~~~~~~~~~~~~~--~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~ 436 (769)
...+...+..+..++. +..+++|+.|++++|.+..++ .+..+++|++|++++|. +..+++..+.++++|++|+++
T Consensus 75 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~ 153 (680)
T 1ziw_A 75 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLS 153 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECC
T ss_pred cCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEcc
Confidence 3445555555666654 667788888888888775554 46778888888888776 555555557778888888888
Q ss_pred ccCccccccCCcc-c--cCCCCCCEEeccCCCCCccc-hhhhcC---------------------------CCCceeecc
Q 039535 437 NIGYFNVLKLPLG-M--SKLGSLELLDISHSSIEELP-EELKLL---------------------------VNLKCLNLR 485 (769)
Q Consensus 437 ~~~~~~~~~l~~~-~--~~l~~L~~L~l~~~~i~~lp-~~~~~l---------------------------~~L~~L~l~ 485 (769)
+| .+..++.. + ..+.+|++|++++|.++.++ ..+..+ ++|+.|+++
T Consensus 154 ~n---~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~ 230 (680)
T 1ziw_A 154 NN---KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230 (680)
T ss_dssp SS---CCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECT
T ss_pred CC---cccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEcc
Confidence 87 44444332 2 24466777777777666432 222222 334444444
Q ss_pred CCCcccccchHHhcCCCc--CcEEEeeccCCCccccccccc------c-ccC--CccchhhhhhcCCCceEEEEEeCChh
Q 039535 486 WTDVLNKIPRQLISNLSR--VRVLRMFATGYDRFHEASEDS------V-LFG--GGEVLIQELLGLKYLEVLELTLGSYH 554 (769)
Q Consensus 486 ~~~~l~~lp~~~~~~l~~--L~~L~l~~~~~~~~~~~~~~~------~-~~~--~~~~~~~~l~~l~~L~~l~l~~~~~~ 554 (769)
+|...+..|.. +..+.. |++|++++|.+..+....+.. . +.. -....+..+..+++|+.|++..+...
T Consensus 231 ~n~l~~~~~~~-~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~ 309 (680)
T 1ziw_A 231 NSQLSTTSNTT-FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309 (680)
T ss_dssp TSCCCEECTTT-TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCC
T ss_pred CCcccccChhH-hhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhh
Confidence 44322222222 334432 555555555544221000000 0 000 01223444556666666665432111
Q ss_pred h---HHHHHh----cccccccceeEEEeccCCCccccccccccccccccceeeccc-----------------cCcceEe
Q 039535 555 A---LQILLS----SNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDC-----------------RGLEELK 610 (769)
Q Consensus 555 ~---~~~l~~----~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----------------~~l~~l~ 610 (769)
. ...+.. ......+|+.|.++++....... ..+..+++|++|++++| +.|+.++
T Consensus 310 ~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~ 387 (680)
T 1ziw_A 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS--NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387 (680)
T ss_dssp C------CCEECTTTTTTCTTCCEEECCSCCBCCCCT--TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEE
T ss_pred cccccccccccChhhcccCCCCCEEECCCCccCCCCh--hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEE
Confidence 0 000000 11234577888887765544333 36788899999998875 3688888
Q ss_pred eeeeccccccCCC-ccccccceEeecCcccccccc--cccccCCccEEeecCChhhhhhh---------------ccCcc
Q 039535 611 IDYTEIAQKRREP-FVFRSLRRVTMVSCHKLKDLT--FLVFAPNLKSISLGDCDALEEII---------------SVGKF 672 (769)
Q Consensus 611 l~~~~~~~~~~~~-~~~~~L~~L~L~~~~~l~~l~--~l~~l~~L~~L~l~~~~~l~~~~---------------~~~~~ 672 (769)
++.|.+.+..+.. ..+++|+.|++++|.....++ .+..+++|+.|++++|... .+. ..+.+
T Consensus 388 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~~L~~L~l~~n~l 466 (680)
T 1ziw_A 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL-QLTRNSFALVPSLQRLMLRRVAL 466 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE-ECCTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc-eeChhhhhcCcccccchhccccc
Confidence 8998888776644 568899999999986434443 4777889999999887532 111 11111
Q ss_pred CCcccccCCCCCCCcccccccccccccccccCC-CCCCCCcceEeecCCccCCCcCCC----------CCcccccceEEe
Q 039535 673 AEVPEMMGHLSPFENLQNLDLSYLLALKSIYWK-PLPFTYLKEMVVNGCDQLKKLPLD----------SSCAEERKFVIR 741 (769)
Q Consensus 673 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~i~~C~~L~~lp~~----------~~~~~l~~~~i~ 741 (769)
..+......+..+++|+.|++++| .++.++.. ...+++|+.|++++| +++.++.. ...++|+.+.++
T Consensus 467 ~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 544 (680)
T 1ziw_A 467 KNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLE 544 (680)
T ss_dssp BCTTCSSCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECC
T ss_pred cccccCCcccccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECC
Confidence 111112233456677888888874 56666543 456788888888776 45554321 223677777777
Q ss_pred cc
Q 039535 742 GE 743 (769)
Q Consensus 742 ~~ 743 (769)
++
T Consensus 545 ~N 546 (680)
T 1ziw_A 545 SN 546 (680)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=4e-21 Score=209.23 Aligned_cols=119 Identities=16% Similarity=0.194 Sum_probs=64.0
Q ss_pred CcceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEE
Q 039535 380 WENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELL 459 (769)
Q Consensus 380 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L 459 (769)
+++++.|+++++.+..++.+..+++|++|++++|. +..++ +..+++|++|++++| .+..++ ++.+++|++|
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~---~~~l~~L~~L~Ls~N---~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNN-ITTLD---LSQNTNLTYLACDSN---KLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSC-CSCCC---CTTCTTCSEEECCSS---CCSCCC--CTTCTTCCEE
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCc-CCeEc---cccCCCCCEEECcCC---CCceee--cCCCCcCCEE
Confidence 34555555555555544455555556666665554 44442 455555666666555 333332 4555556666
Q ss_pred eccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccC
Q 039535 460 DISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATG 513 (769)
Q Consensus 460 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~ 513 (769)
++++|+++.+| ++.+++|++|++++|. +..++ ++.+++|++|++++|.
T Consensus 112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 112 NCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLNK 159 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTCS
T ss_pred ECCCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCCC
Confidence 66655555553 5555556666665554 33343 4455556666555553
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=6.6e-21 Score=218.82 Aligned_cols=363 Identities=19% Similarity=0.154 Sum_probs=240.2
Q ss_pred eEEEEcCCccccCCCCCCCcceeEEEEeeccccccC--CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccC
Q 039535 362 NFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLS--EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIG 439 (769)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~ 439 (769)
..+.|.+.++..+|.. -.+.++.|+|++|.+..++ +|.++++|++|+|++|. +..+++++|.++++|++|+|++|
T Consensus 34 ~~~~c~~~~l~~vP~~-lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N- 110 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN- 110 (635)
T ss_dssp TEEECTTSCCSSCCSS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-
T ss_pred CEEECCCCCcCccCCC-CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCC-
Confidence 3467888899999863 2368999999999997775 58999999999999997 88999888999999999999999
Q ss_pred ccccccCCc-cccCCCCCCEEeccCCCCCccchh-hhcCCCCceeeccCCCccc-ccchHHhcCCCcCcEEEeeccCCCc
Q 039535 440 YFNVLKLPL-GMSKLGSLELLDISHSSIEELPEE-LKLLVNLKCLNLRWTDVLN-KIPRQLISNLSRVRVLRMFATGYDR 516 (769)
Q Consensus 440 ~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~-~lp~~~~~~l~~L~~L~l~~~~~~~ 516 (769)
.+..+|. .+.++.+|++|++++|+++.+|.. ++.+++|++|++++|.... .+|.. ++.+++|++|++++|.+..
T Consensus 111 --~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 111 --PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp --CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCE
T ss_pred --cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCccccc
Confidence 7777775 578999999999999999988764 8899999999999997433 34554 8899999999999998765
Q ss_pred ccccccccc-----------c--------cC------------------CccchhhhhhcC-------------------
Q 039535 517 FHEASEDSV-----------L--------FG------------------GGEVLIQELLGL------------------- 540 (769)
Q Consensus 517 ~~~~~~~~~-----------~--------~~------------------~~~~~~~~l~~l------------------- 540 (769)
+....+... . .. ........+..+
T Consensus 188 ~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 267 (635)
T 4g8a_A 188 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 267 (635)
T ss_dssp ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred cccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccc
Confidence 432211000 0 00 000000011111
Q ss_pred ------------------------------------------------------------CCceEEEEEeCChhhHH---
Q 039535 541 ------------------------------------------------------------KYLEVLELTLGSYHALQ--- 557 (769)
Q Consensus 541 ------------------------------------------------------------~~L~~l~l~~~~~~~~~--- 557 (769)
..|+.|++..+.+..+.
T Consensus 268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 347 (635)
T 4g8a_A 268 EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK 347 (635)
T ss_dssp SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCB
T ss_pred ccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCccc
Confidence 12222222221110000
Q ss_pred --HH----H--------hcccccccceeEEEeccCCCccccc-----------------------cccccccccccceee
Q 039535 558 --IL----L--------SSNKLKSCIRSLLLFGFRGTKYFID-----------------------ATAFADLKHLNELQI 600 (769)
Q Consensus 558 --~l----~--------~~~~~~~~l~~L~l~~~~~~~~~~~-----------------------~~~l~~~~~L~~L~l 600 (769)
.+ . ....-.++++.|.++.......... ...+..+++|+.+++
T Consensus 348 l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l 427 (635)
T 4g8a_A 348 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDF 427 (635)
T ss_dssp CTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEEC
T ss_pred chhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhh
Confidence 00 0 0000124566666555433221111 123344555666655
Q ss_pred cc--------------ccCcceEeeeeeccccccCCC-ccccccceEeecCcccccccc--cccccCCccEEeecCChhh
Q 039535 601 HD--------------CRGLEELKIDYTEIAQKRREP-FVFRSLRRVTMVSCHKLKDLT--FLVFAPNLKSISLGDCDAL 663 (769)
Q Consensus 601 ~~--------------~~~l~~l~l~~~~~~~~~~~~-~~~~~L~~L~L~~~~~l~~l~--~l~~l~~L~~L~l~~~~~l 663 (769)
.. +..+..++++.|.+....+.. ..+++|+.|++++|.....+. .+..+++|++|+|++|. +
T Consensus 428 ~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L 506 (635)
T 4g8a_A 428 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-L 506 (635)
T ss_dssp TTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-C
T ss_pred hhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-c
Confidence 43 345666777777766655544 457888999998886555432 47778899999998873 3
Q ss_pred hhhhccCccCCcccccCCCCCCCcccccccccccccccccCC-CCCCCCcceEeecCCccCCCcCCCCC-c--ccccceE
Q 039535 664 EEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALKSIYWK-PLPFTYLKEMVVNGCDQLKKLPLDSS-C--AEERKFV 739 (769)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~i~~C~~L~~lp~~~~-~--~~l~~~~ 739 (769)
+.+++ ..+.++++|++|+|++| +++.++.. ...+++|+.|+++++ +++.++.... . .+|+.+.
T Consensus 507 ~~l~~-----------~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~ 573 (635)
T 4g8a_A 507 EQLSP-----------TAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLN 573 (635)
T ss_dssp CEECT-----------TTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEE
T ss_pred CCcCh-----------HHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEE
Confidence 33211 24567889999999995 78777643 457899999999887 6666654432 2 5789999
Q ss_pred Eeccc
Q 039535 740 IRGEA 744 (769)
Q Consensus 740 i~~~~ 744 (769)
+++++
T Consensus 574 L~~Np 578 (635)
T 4g8a_A 574 LTQND 578 (635)
T ss_dssp CTTCC
T ss_pred eeCCC
Confidence 98544
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=1e-20 Score=196.89 Aligned_cols=108 Identities=23% Similarity=0.342 Sum_probs=78.1
Q ss_pred CCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCccchhhhcCCCCce
Q 039535 402 CPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEELPEELKLLVNLKC 481 (769)
Q Consensus 402 ~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~ 481 (769)
.++++.|++++|. +..+|.. +.++++|++|++++| .+..+|..++.+++|++|++++|.++.+|..+..+++|++
T Consensus 80 ~~~l~~L~L~~n~-l~~lp~~-l~~l~~L~~L~L~~n---~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQFPDQ-AFRLSHLQHMTIDAA---GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSC-CSSCCSC-GGGGTTCSEEEEESS---CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCE
T ss_pred ccceeEEEccCCC-chhcChh-hhhCCCCCEEECCCC---CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCE
Confidence 4567777887776 6677765 555888888888888 5557777778888888888888888888877888888888
Q ss_pred eeccCCCcccccchHHhc---------CCCcCcEEEeeccCCC
Q 039535 482 LNLRWTDVLNKIPRQLIS---------NLSRVRVLRMFATGYD 515 (769)
Q Consensus 482 L~l~~~~~l~~lp~~~~~---------~l~~L~~L~l~~~~~~ 515 (769)
|++++|..++.+|.. +. ++++|++|++++|.+.
T Consensus 155 L~L~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~ 196 (328)
T 4fcg_A 155 LSIRACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR 196 (328)
T ss_dssp EEEEEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC
T ss_pred EECCCCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC
Confidence 888887777777764 33 2566666666665543
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=2.1e-20 Score=195.70 Aligned_cols=238 Identities=18% Similarity=0.196 Sum_probs=145.3
Q ss_pred ceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccC-CccccCCCCCCEEe
Q 039535 382 NVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKL-PLGMSKLGSLELLD 460 (769)
Q Consensus 382 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l-~~~~~~l~~L~~L~ 460 (769)
+++.+.++++.+..++.- -.++|++|++++|. +..+++..|.++++|++|++++| .+..+ |..+..+++|++|+
T Consensus 34 ~l~~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n---~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKE-ISPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNN---KISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCSSCCSC-CCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS---CCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCccccCCC-CCCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCC---ccCccCHhHhhCcCCCCEEE
Confidence 577788888777655531 24688888988887 67777666888889999999888 55555 56778888899999
Q ss_pred ccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcC
Q 039535 461 ISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGL 540 (769)
Q Consensus 461 l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 540 (769)
+++|.++.+|..+. ++|++|++++|. +..+|...+.++++|++|++++|.+... ...+..+..+
T Consensus 109 L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~~~l 172 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENS-------------GFEPGAFDGL 172 (332)
T ss_dssp CCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGG-------------GSCTTSSCSC
T ss_pred CCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccC-------------CCCcccccCC
Confidence 99888888877654 788899998887 6677766678888899999888877531 1233444455
Q ss_pred CCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccccceeeccccCcceEeeeeecccccc
Q 039535 541 KYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGLEELKIDYTEIAQKR 620 (769)
Q Consensus 541 ~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~l~~~~~~~~~ 620 (769)
+|+.|+++.+.+..++. .+..+++.|.++++....... ..+..+++|++|+++++ .+.+..
T Consensus 173 -~L~~L~l~~n~l~~l~~-----~~~~~L~~L~l~~n~i~~~~~--~~l~~l~~L~~L~L~~N-----------~l~~~~ 233 (332)
T 2ft3_A 173 -KLNYLRISEAKLTGIPK-----DLPETLNELHLDHNKIQAIEL--EDLLRYSKLYRLGLGHN-----------QIRMIE 233 (332)
T ss_dssp -CCSCCBCCSSBCSSCCS-----SSCSSCSCCBCCSSCCCCCCT--TSSTTCTTCSCCBCCSS-----------CCCCCC
T ss_pred -ccCEEECcCCCCCccCc-----cccCCCCEEECCCCcCCccCH--HHhcCCCCCCEEECCCC-----------cCCcCC
Confidence 67777766554433111 111344444444433222211 13333344444433332 222222
Q ss_pred C-CCccccccceEeecCccccccccc-ccccCCccEEeecCC
Q 039535 621 R-EPFVFRSLRRVTMVSCHKLKDLTF-LVFAPNLKSISLGDC 660 (769)
Q Consensus 621 ~-~~~~~~~L~~L~L~~~~~l~~l~~-l~~l~~L~~L~l~~~ 660 (769)
+ ....+++|++|++++| .++.++. +..+++|+.|++++|
T Consensus 234 ~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 234 NGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp TTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS
T ss_pred hhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC
Confidence 2 1134555566666555 2344432 555555555555554
No 42
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.84 E-value=9.9e-20 Score=205.12 Aligned_cols=147 Identities=21% Similarity=0.314 Sum_probs=118.7
Q ss_pred ceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccC-CccccCCCCCCEEe
Q 039535 382 NVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKL-PLGMSKLGSLELLD 460 (769)
Q Consensus 382 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l-~~~~~~l~~L~~L~ 460 (769)
..+.++++++.+..++.- -.++|++|++++|. +..+++..|.++++|++|++++| .+..+ |..+..+++|++|+
T Consensus 32 ~~~~l~ls~~~L~~ip~~-~~~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N---~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKD-LPPRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHN---RIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp -CCEEECTTSCCCSCCTT-SCTTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSC---CCCEECTTTTTTCTTCCEEE
T ss_pred CCcEEEcCCCCCccCCCC-CCCCcCEEECCCCC-ccccChhhhccCCCccEEECCCC---CCCcCCHHHhCCCCCCCEEE
Confidence 447899999998766642 13899999999998 77888777999999999999999 66666 56789999999999
Q ss_pred ccCCCCCccchhhhcCCCCceeeccCCCcccccc--hHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhh
Q 039535 461 ISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIP--RQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELL 538 (769)
Q Consensus 461 l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 538 (769)
+++|.++.+|.. .+++|++|++++|. +..++ .. ++++++|++|++++|.+.. .....+.
T Consensus 107 Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~-~~~l~~L~~L~L~~n~l~~---------------~~~~~l~ 167 (562)
T 3a79_B 107 VSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKE-FGNLTKLTFLGLSAAKFRQ---------------LDLLPVA 167 (562)
T ss_dssp CTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGG-GGGCTTCCEEEEECSBCCT---------------TTTGGGT
T ss_pred CCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHh-hcccCcccEEecCCCcccc---------------Cchhhhh
Confidence 999999999877 89999999999998 55543 44 8999999999999998762 1222333
Q ss_pred cCCCceEEEEEeCCh
Q 039535 539 GLKYLEVLELTLGSY 553 (769)
Q Consensus 539 ~l~~L~~l~l~~~~~ 553 (769)
.+ +|+.|+++.+.+
T Consensus 168 ~L-~L~~L~L~~n~l 181 (562)
T 3a79_B 168 HL-HLSCILLDLVSY 181 (562)
T ss_dssp TS-CEEEEEEEESSC
T ss_pred hc-eeeEEEeecccc
Confidence 33 449999988765
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=6.4e-20 Score=191.87 Aligned_cols=239 Identities=19% Similarity=0.234 Sum_probs=133.4
Q ss_pred ceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccC-CccccCCCCCCEEe
Q 039535 382 NVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKL-PLGMSKLGSLELLD 460 (769)
Q Consensus 382 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l-~~~~~~l~~L~~L~ 460 (769)
+++.+.++++.+..++. .-.++|++|++++|. +..++...|.++++|++|++++| .+..+ |..+..+++|++|+
T Consensus 32 ~l~~l~~~~~~l~~lp~-~~~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n---~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPK-DLPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINN---KISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCCSCCC-SCCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSS---CCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCccccCc-cCCCCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCC---cCCeeCHHHhcCCCCCCEEE
Confidence 45566666665544442 113567777777765 66666656777777777777777 44444 55667777777777
Q ss_pred ccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcC
Q 039535 461 ISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGL 540 (769)
Q Consensus 461 l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 540 (769)
+++|.++.+|..+. ++|++|++++|. +..++...+.++++|++|++++|.+... ...+..+..+
T Consensus 107 Ls~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~~~l 170 (330)
T 1xku_A 107 LSKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSS-------------GIENGAFQGM 170 (330)
T ss_dssp CCSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGG-------------GBCTTGGGGC
T ss_pred CCCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCcc-------------CcChhhccCC
Confidence 77777777765543 677777777776 5555555567777777777777766421 2234556667
Q ss_pred CCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccccceeeccccCcceEeeeeecccccc
Q 039535 541 KYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGLEELKIDYTEIAQKR 620 (769)
Q Consensus 541 ~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~l~~~~~~~~~ 620 (769)
++|+.|+++.+.+..++. ....+|+.|.++++....... ..+..+++|++|+++++ .+.+..
T Consensus 171 ~~L~~L~l~~n~l~~l~~-----~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~n-----------~l~~~~ 232 (330)
T 1xku_A 171 KKLSYIRIADTNITTIPQ-----GLPPSLTELHLDGNKITKVDA--ASLKGLNNLAKLGLSFN-----------SISAVD 232 (330)
T ss_dssp TTCCEEECCSSCCCSCCS-----SCCTTCSEEECTTSCCCEECT--GGGTTCTTCCEEECCSS-----------CCCEEC
T ss_pred CCcCEEECCCCccccCCc-----cccccCCEEECCCCcCCccCH--HHhcCCCCCCEEECCCC-----------cCceeC
Confidence 777777766554432111 111344444444433222211 13344444444444332 222222
Q ss_pred C-CCccccccceEeecCcccccccc-cccccCCccEEeecCC
Q 039535 621 R-EPFVFRSLRRVTMVSCHKLKDLT-FLVFAPNLKSISLGDC 660 (769)
Q Consensus 621 ~-~~~~~~~L~~L~L~~~~~l~~l~-~l~~l~~L~~L~l~~~ 660 (769)
+ ....+++|++|++++| .++.++ .+..+++|++|++++|
T Consensus 233 ~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 233 NGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp TTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS
T ss_pred hhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC
Confidence 2 1234556666666666 344443 3555566666666554
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=3.3e-20 Score=192.00 Aligned_cols=130 Identities=22% Similarity=0.242 Sum_probs=95.7
Q ss_pred cceeEEEEeeccccc----cCCCCCCCCceEEEeec-ccchhcccCcccccCCcccEEEeeccCccccc-cCCccccCCC
Q 039535 381 ENVRRLSLMQNQIKV----LSEVPTCPHLLTLFLDF-NRELMMIAGGYFQFMPSLKVLKISNIGYFNVL-KLPLGMSKLG 454 (769)
Q Consensus 381 ~~l~~l~l~~~~~~~----~~~~~~~~~L~~L~l~~-~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~-~l~~~~~~l~ 454 (769)
.+++.|+++++.+.. +..+..+++|++|++++ |.....+|. .|.++++|++|++++| .+. .+|..+..++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n---~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHT---NVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEE---CCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCC---eeCCcCCHHHhCCC
Confidence 468888888887742 34567788888888885 553334444 4778888888888888 444 5677778888
Q ss_pred CCCEEeccCCCCC-ccchhhhcCCCCceeeccCCCcccccchHHhcCCC-cCcEEEeeccCCC
Q 039535 455 SLELLDISHSSIE-ELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLS-RVRVLRMFATGYD 515 (769)
Q Consensus 455 ~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~-~L~~L~l~~~~~~ 515 (769)
+|++|++++|.++ .+|..+..+++|++|++++|...+.+|.. +..++ +|++|++++|.+.
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEE
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeee
Confidence 8888888888887 67777888888888888888755567766 66776 7888888877654
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=5.8e-20 Score=194.11 Aligned_cols=268 Identities=20% Similarity=0.206 Sum_probs=184.2
Q ss_pred EEEcCCccccCCCCCCCcceeEEEEeeccccccC--CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCcc
Q 039535 364 LVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLS--EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYF 441 (769)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~ 441 (769)
+.+.+..+..+|.. -.++++.|++++|.+..++ .+..+++|++|++++|. +..+++..|.++++|++|++++|
T Consensus 36 c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n--- 110 (353)
T 2z80_A 36 CKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYN--- 110 (353)
T ss_dssp EECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS---
T ss_pred eeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCC---
Confidence 56667778888763 3368999999999997665 47899999999999887 77787777999999999999999
Q ss_pred ccccCCcc-ccCCCCCCEEeccCCCCCccch--hhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccc
Q 039535 442 NVLKLPLG-MSKLGSLELLDISHSSIEELPE--ELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFH 518 (769)
Q Consensus 442 ~~~~l~~~-~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~ 518 (769)
.+..+|.. +..+++|++|++++|+++.+|. .+..+++|++|++++|..++.+++..+.++++|++|++++|.+..
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-- 188 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS-- 188 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE--
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc--
Confidence 77777765 7889999999999999998887 588899999999999966777766558899999999999998763
Q ss_pred cccccccccCCccchhhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccc-cccccccccccc
Q 039535 519 EASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFID-ATAFADLKHLNE 597 (769)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~-~~~l~~~~~L~~ 597 (769)
..+..+..+++|+.|+++.+....+..... ...++++.|.++++........ .........++.
T Consensus 189 -------------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~ 253 (353)
T 2z80_A 189 -------------YEPKSLKSIQNVSHLILHMKQHILLLEIFV--DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKK 253 (353)
T ss_dssp -------------ECTTTTTTCSEEEEEEEECSCSTTHHHHHH--HHTTTEEEEEEESCBCTTCCCC------CCCCCCE
T ss_pred -------------cCHHHHhccccCCeecCCCCccccchhhhh--hhcccccEEECCCCccccccccccccccccchhhc
Confidence 356678889999999999887765554321 1124677777766543332110 001112233333
Q ss_pred eeeccccCcceEeeeeeccccccCCCccccccceEeecCccccccccc--ccccCCccEEeecCC
Q 039535 598 LQIHDCRGLEELKIDYTEIAQKRREPFVFRSLRRVTMVSCHKLKDLTF--LVFAPNLKSISLGDC 660 (769)
Q Consensus 598 L~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~--l~~l~~L~~L~l~~~ 660 (769)
++++++ .++++.+..++.....+++|++|++++| .++.++. +..+++|++|+|++|
T Consensus 254 l~L~~~------~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 254 FTFRNV------KITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp EEEESC------BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cccccc------cccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCC
Confidence 333322 2222222222222234555666666655 3444443 345555666665555
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.2e-19 Score=188.92 Aligned_cols=228 Identities=21% Similarity=0.292 Sum_probs=150.8
Q ss_pred CCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcE
Q 039535 427 MPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRV 506 (769)
Q Consensus 427 l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~ 506 (769)
..++++|++++| .+..+|..+..+++|++|++++|.++.+|..++.+++|++|++++|. +..+|.. ++++++|++
T Consensus 80 ~~~l~~L~L~~n---~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~-l~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSV---PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPAS-IASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESS---CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGG-GGGCTTCCE
T ss_pred ccceeEEEccCC---CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHH-HhcCcCCCE
Confidence 588999999999 77789999999999999999999999999999999999999999997 5688887 899999999
Q ss_pred EEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCcccccc
Q 039535 507 LRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDA 586 (769)
Q Consensus 507 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~ 586 (769)
|++++|..... .+..+.. . .+ .
T Consensus 155 L~L~~n~~~~~---------------~p~~~~~------~--------------------------~~-----------~ 176 (328)
T 4fcg_A 155 LSIRACPELTE---------------LPEPLAS------T--------------------------DA-----------S 176 (328)
T ss_dssp EEEEEETTCCC---------------CCSCSEE------E--------------------------C------------C
T ss_pred EECCCCCCccc---------------cChhHhh------c--------------------------cc-----------h
Confidence 99999876531 1111110 0 00 0
Q ss_pred ccccccccccceeeccccCcceEeeeeeccccccCCCccccccceEeecCcccccccc-cccccCCccEEeecCChhhhh
Q 039535 587 TAFADLKHLNELQIHDCRGLEELKIDYTEIAQKRREPFVFRSLRRVTMVSCHKLKDLT-FLVFAPNLKSISLGDCDALEE 665 (769)
Q Consensus 587 ~~l~~~~~L~~L~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~l~~l~~L~~L~l~~~~~l~~ 665 (769)
..+.++++|++|++++ |.+..++.....+++|++|+|++|. ++.++ .+..+++|++|+|++|.....
T Consensus 177 ~~~~~l~~L~~L~L~~-----------n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~ 244 (328)
T 4fcg_A 177 GEHQGLVNLQSLRLEW-----------TGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRN 244 (328)
T ss_dssp CCEEESTTCCEEEEEE-----------ECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCB
T ss_pred hhhccCCCCCEEECcC-----------CCcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhh
Confidence 1233334444443333 3333223333456666666666664 33333 456667777777776654433
Q ss_pred hhccCccCCcccccCCCCCCCcccccccccccccccccCCCCCCCCcceEeecCCccCCCcCCCCCc-ccccceEEe
Q 039535 666 IISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALKSIYWKPLPFTYLKEMVVNGCDQLKKLPLDSSC-AEERKFVIR 741 (769)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~-~~l~~~~i~ 741 (769)
+ |. .+..+++|++|++++|..++.+|.....+++|+.|++++|+.++.+|..... ++++.+.+.
T Consensus 245 ~---------p~---~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 245 Y---------PP---IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp C---------CC---CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred h---------HH---HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 2 11 3445567777777776666666666666677777777777777777755544 555555443
No 47
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=200.85 Aligned_cols=287 Identities=21% Similarity=0.202 Sum_probs=202.5
Q ss_pred eEEEEcCCccccC--CCCCCCcceeEEEEeecccccc--CCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeec
Q 039535 362 NFLVCAGAGLKEA--PDVKGWENVRRLSLMQNQIKVL--SEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISN 437 (769)
Q Consensus 362 ~~~~~~~~~~~~~--~~~~~~~~l~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~ 437 (769)
..+...+..+..+ ..+..+++|+.|++++|.+..+ ..+..+++|++|++++|. +..++...|.++++|++|++++
T Consensus 35 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~ 113 (477)
T 2id5_A 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISE 113 (477)
T ss_dssp SEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTT
T ss_pred cEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCC
Confidence 3455555555555 3467789999999999998655 458899999999999987 8888888899999999999999
Q ss_pred cCccccccC-CccccCCCCCCEEeccCCCCCcc-chhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCC
Q 039535 438 IGYFNVLKL-PLGMSKLGSLELLDISHSSIEEL-PEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 438 ~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 515 (769)
| .+..+ +..+..+++|++|++++|.++.+ +..+..+++|++|++++|. +..++...+.++++|+.|++.+|.+.
T Consensus 114 n---~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 114 N---KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp S---CCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred C---ccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCc
Confidence 9 55544 56788999999999999999965 4568899999999999997 77788777999999999999999876
Q ss_pred ccccccccccccCCccchhhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccc
Q 039535 516 RFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHL 595 (769)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L 595 (769)
.+ ....+..+++|+.|+++.+.... .+........+|+.|.++++....... ..+..+++|
T Consensus 190 ~~---------------~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L 250 (477)
T 2id5_A 190 AI---------------RDYSFKRLYRLKVLEISHWPYLD--TMTPNCLYGLNLTSLSITHCNLTAVPY--LAVRHLVYL 250 (477)
T ss_dssp EE---------------CTTCSCSCTTCCEEEEECCTTCC--EECTTTTTTCCCSEEEEESSCCCSCCH--HHHTTCTTC
T ss_pred Ee---------------ChhhcccCcccceeeCCCCcccc--ccCcccccCccccEEECcCCcccccCH--HHhcCcccc
Confidence 42 34467788999999998654211 000001111267777777765443321 234555555
Q ss_pred cceeeccccCcceEeeeeeccccccCC-CccccccceEeecCcccccccc--cccccCCccEEeecCChhhhhhhccCcc
Q 039535 596 NELQIHDCRGLEELKIDYTEIAQKRRE-PFVFRSLRRVTMVSCHKLKDLT--FLVFAPNLKSISLGDCDALEEIISVGKF 672 (769)
Q Consensus 596 ~~L~l~~~~~l~~l~l~~~~~~~~~~~-~~~~~~L~~L~L~~~~~l~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~ 672 (769)
+.|+++++ .+.+..+. ...+++|++|+|++|. ++.+. .+..+++|+.|+|++|. +
T Consensus 251 ~~L~Ls~n-----------~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l--------- 308 (477)
T 2id5_A 251 RFLNLSYN-----------PISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQ-L--------- 308 (477)
T ss_dssp CEEECCSS-----------CCCEECTTSCTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSSC-C---------
T ss_pred CeeECCCC-----------cCCccChhhccccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCCc-C---------
Confidence 55555544 33332222 2457788888888874 45443 36677888888888763 2
Q ss_pred CCcccccCCCCCCCcccccccccc
Q 039535 673 AEVPEMMGHLSPFENLQNLDLSYL 696 (769)
Q Consensus 673 ~~~~~~~~~~~~~~~L~~L~l~~c 696 (769)
+.++.. .+..+++|+.|+++++
T Consensus 309 ~~~~~~--~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 309 TTLEES--VFHSVGNLETLILDSN 330 (477)
T ss_dssp SCCCGG--GBSCGGGCCEEECCSS
T ss_pred ceeCHh--HcCCCcccCEEEccCC
Confidence 222221 2345677888888775
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=5.5e-19 Score=192.12 Aligned_cols=272 Identities=25% Similarity=0.260 Sum_probs=129.8
Q ss_pred cceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEe
Q 039535 381 ENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLD 460 (769)
Q Consensus 381 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~ 460 (769)
++++.|++++|.+..++.+. ++|++|++++|. +..+| . |.++++|++|++++| .+..+|..+ .+|++|+
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~-l~~lp-~-~~~l~~L~~L~l~~N---~l~~lp~~~---~~L~~L~ 179 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQ-LEKLP-E-LQNSSFLKIIDVDNN---SLKKLPDLP---PSLEFIA 179 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSC-CSSCC-C-CTTCTTCCEEECCSS---CCSCCCCCC---TTCCEEE
T ss_pred CCCcEEECCCCccCcccCCC--CCCCEEECcCCC-CCCCc-c-cCCCCCCCEEECCCC---cCcccCCCc---ccccEEE
Confidence 34444444444443332211 345555555443 33343 1 444555555555554 333333222 2455555
Q ss_pred ccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcC
Q 039535 461 ISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGL 540 (769)
Q Consensus 461 l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 540 (769)
+++|.++.+| .++.+++|++|++++|. +..+|. ...+|++|++++|.+.. ++ .++.+
T Consensus 180 L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~----~~~~L~~L~l~~n~l~~----------------lp-~~~~l 236 (454)
T 1jl5_A 180 AGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPD----LPLSLESIVAGNNILEE----------------LP-ELQNL 236 (454)
T ss_dssp CCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCC----CCTTCCEEECCSSCCSS----------------CC-CCTTC
T ss_pred CcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCC----CcCcccEEECcCCcCCc----------------cc-ccCCC
Confidence 5555444444 34444555555555444 333332 11345555555444332 12 35677
Q ss_pred CCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccccceeeccc---------cCcceEee
Q 039535 541 KYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDC---------RGLEELKI 611 (769)
Q Consensus 541 ~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~---------~~l~~l~l 611 (769)
++|+.|+++.+.+..++ ....+++.|.++++....... .+++|++|+++++ +.|+.+++
T Consensus 237 ~~L~~L~l~~N~l~~l~------~~~~~L~~L~l~~N~l~~l~~------~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l 304 (454)
T 1jl5_A 237 PFLTTIYADNNLLKTLP------DLPPSLEALNVRDNYLTDLPE------LPQSLTFLDVSENIFSGLSELPPNLYYLNA 304 (454)
T ss_dssp TTCCEEECCSSCCSSCC------SCCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSEESCCCTTCCEEEC
T ss_pred CCCCEEECCCCcCCccc------ccccccCEEECCCCcccccCc------ccCcCCEEECcCCccCcccCcCCcCCEEEC
Confidence 77778877766654322 123567777777665443221 1356777777664 35666666
Q ss_pred eeeccccccCCCccccccceEeecCcccccccccccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCccccc
Q 039535 612 DYTEIAQKRREPFVFRSLRRVTMVSCHKLKDLTFLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNL 691 (769)
Q Consensus 612 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L 691 (769)
++|.+.++.. ..++|++|++++|. ++.++.. +++|+.|++++|.. +.+|. .+++|++|
T Consensus 305 ~~N~l~~i~~---~~~~L~~L~Ls~N~-l~~lp~~--~~~L~~L~L~~N~l----------~~lp~------~l~~L~~L 362 (454)
T 1jl5_A 305 SSNEIRSLCD---LPPSLEELNVSNNK-LIELPAL--PPRLERLIASFNHL----------AEVPE------LPQNLKQL 362 (454)
T ss_dssp CSSCCSEECC---CCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSSCC----------SCCCC------CCTTCCEE
T ss_pred cCCcCCcccC---CcCcCCEEECCCCc-ccccccc--CCcCCEEECCCCcc----------ccccc------hhhhccEE
Confidence 6666554332 12467777777763 4544432 56777777776522 23333 24577777
Q ss_pred cccccccccc---ccCCCCCC-------------CCcceEeecCCc
Q 039535 692 DLSYLLALKS---IYWKPLPF-------------TYLKEMVVNGCD 721 (769)
Q Consensus 692 ~l~~c~~l~~---~~~~~~~~-------------~~L~~L~i~~C~ 721 (769)
++++| .++. +|.....+ ++|+.|++++++
T Consensus 363 ~L~~N-~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 363 HVEYN-PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp ECCSS-CCSSCCCCCTTCCEEECCC---------------------
T ss_pred ECCCC-CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 77775 4443 33333333 677777777653
No 49
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=8e-19 Score=190.84 Aligned_cols=298 Identities=18% Similarity=0.195 Sum_probs=193.3
Q ss_pred eEEEEcCCccccCCCCCCCcceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCcc
Q 039535 362 NFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYF 441 (769)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~ 441 (769)
..+...+..+..++... ++++.|.+++|.+..++++..+++|++|++++|. +..+|.. ..+|++|++++|
T Consensus 114 ~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~-l~~lp~~----~~~L~~L~L~~n--- 183 (454)
T 1jl5_A 114 KSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS-LKKLPDL----PPSLEFIAAGNN--- 183 (454)
T ss_dssp CEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSS---
T ss_pred cEEECCCCccCcccCCC--CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCc-CcccCCC----cccccEEECcCC---
Confidence 44444555555555432 6899999999999888889999999999999987 6666653 369999999999
Q ss_pred ccccCCccccCCCCCCEEeccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCcccccc
Q 039535 442 NVLKLPLGMSKLGSLELLDISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEAS 521 (769)
Q Consensus 442 ~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~ 521 (769)
.+..+| .++.+++|++|++++|.++.+|.. .++|++|++++|. +..+|. ++.+++|++|++++|.+..++
T Consensus 184 ~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~-l~~lp~--~~~l~~L~~L~l~~N~l~~l~--- 253 (454)
T 1jl5_A 184 QLEELP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNI-LEELPE--LQNLPFLTTIYADNNLLKTLP--- 253 (454)
T ss_dssp CCSSCC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSSCCC--CTTCTTCCEEECCSSCCSSCC---
T ss_pred cCCcCc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCc-CCcccc--cCCCCCCCEEECCCCcCCccc---
Confidence 666676 688999999999999999987753 3689999999997 668885 889999999999999877431
Q ss_pred ccccccCCccchhhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccccceeec
Q 039535 522 EDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIH 601 (769)
Q Consensus 522 ~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~ 601 (769)
..+++|+.|+++.+.+..++ ....+++.|.++++....... -.++|+.|+++
T Consensus 254 ----------------~~~~~L~~L~l~~N~l~~l~------~~~~~L~~L~ls~N~l~~l~~------~~~~L~~L~l~ 305 (454)
T 1jl5_A 254 ----------------DLPPSLEALNVRDNYLTDLP------ELPQSLTFLDVSENIFSGLSE------LPPNLYYLNAS 305 (454)
T ss_dssp ----------------SCCTTCCEEECCSSCCSCCC------CCCTTCCEEECCSSCCSEESC------CCTTCCEEECC
T ss_pred ----------------ccccccCEEECCCCcccccC------cccCcCCEEECcCCccCcccC------cCCcCCEEECc
Confidence 12378899998877765422 223678888888875443221 12678888887
Q ss_pred cc---------cCcceEeeeeeccccccCCCccccccceEeecCcccccccccccccCCccEEeecCChhhhhhhccCcc
Q 039535 602 DC---------RGLEELKIDYTEIAQKRREPFVFRSLRRVTMVSCHKLKDLTFLVFAPNLKSISLGDCDALEEIISVGKF 672 (769)
Q Consensus 602 ~~---------~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~ 672 (769)
++ +.|+.+++++|.+.+++. .+++|+.|++++| .++.++. .+++|++|++++|....
T Consensus 306 ~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~---~~~~L~~L~L~~N-~l~~lp~--~l~~L~~L~L~~N~l~~-------- 371 (454)
T 1jl5_A 306 SNEIRSLCDLPPSLEELNVSNNKLIELPA---LPPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYNPLRE-------- 371 (454)
T ss_dssp SSCCSEECCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCCSS--------
T ss_pred CCcCCcccCCcCcCCEEECCCCccccccc---cCCcCCEEECCCC-ccccccc--hhhhccEEECCCCCCCc--------
Confidence 65 478899999999887544 3799999999999 5777777 58999999999874322
Q ss_pred CCcccccCCCCCC-------------CcccccccccccccccccCCCCCCCCcceEeecCCccCCCcC
Q 039535 673 AEVPEMMGHLSPF-------------ENLQNLDLSYLLALKSIYWKPLPFTYLKEMVVNGCDQLKKLP 727 (769)
Q Consensus 673 ~~~~~~~~~~~~~-------------~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~C~~L~~lp 727 (769)
+|.....+..+ ++|+.|+++++ .++.++... ++|+.|.+.+|.--...|
T Consensus 372 --l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N-~l~~~~~iP---~sl~~L~~~~~~~~~~~~ 433 (454)
T 1jl5_A 372 --FPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN-PLREFPDIP---ESVEDLRMNSERVVDPYE 433 (454)
T ss_dssp --CCCCCTTCCEEECCC---------------------------------------------------
T ss_pred --CCCChHHHHhhhhcccccccccccCcCCEEECCCC-cCCccccch---hhHhheeCcCcccCCccc
Confidence 11111222222 78999999995 565443221 467778887775444443
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=1.7e-18 Score=181.00 Aligned_cols=126 Identities=21% Similarity=0.270 Sum_probs=103.1
Q ss_pred CCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCc-cccCCCCCCEEeccCCCCCcc-chhhhcCCCCc
Q 039535 403 PHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPL-GMSKLGSLELLDISHSSIEEL-PEELKLLVNLK 480 (769)
Q Consensus 403 ~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~ 480 (769)
.++++++++++. +..+|... .++|++|++++| .+..++. .+..+++|++|++++|.++.+ |..+..+++|+
T Consensus 31 c~l~~l~~~~~~-l~~lp~~~---~~~l~~L~L~~n---~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (330)
T 1xku_A 31 CHLRVVQCSDLG-LEKVPKDL---PPDTALLDLQNN---KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103 (330)
T ss_dssp EETTEEECTTSC-CCSCCCSC---CTTCCEEECCSS---CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CCCeEEEecCCC-ccccCccC---CCCCeEEECCCC---cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCC
Confidence 378999999776 77777653 378999999999 6666664 688999999999999999976 77899999999
Q ss_pred eeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCChh
Q 039535 481 CLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYH 554 (769)
Q Consensus 481 ~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~ 554 (769)
+|++++|. +..+|.. -.++|++|++++|.+.. .....+..+++|+.|+++.+...
T Consensus 104 ~L~Ls~n~-l~~l~~~---~~~~L~~L~l~~n~l~~---------------~~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 104 RLYLSKNQ-LKELPEK---MPKTLQELRVHENEITK---------------VRKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp EEECCSSC-CSBCCSS---CCTTCCEEECCSSCCCB---------------BCHHHHTTCTTCCEEECCSSCCC
T ss_pred EEECCCCc-CCccChh---hcccccEEECCCCcccc---------------cCHhHhcCCccccEEECCCCcCC
Confidence 99999997 7788865 23899999999998763 34566888999999998866543
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=7.5e-19 Score=192.12 Aligned_cols=239 Identities=23% Similarity=0.277 Sum_probs=185.9
Q ss_pred ceEEEEcCCccccCCCCCCCcceeEEEEeecccccc--CCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeecc
Q 039535 361 INFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVL--SEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNI 438 (769)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~ 438 (769)
...+.+.+.++..+|.. -.++++.|++++|.+..+ ..+..+++|++|++++|. +..+++..|.++++|++|++++|
T Consensus 56 ~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCC
Confidence 34577888888888863 347899999999999665 457899999999999987 77888778999999999999999
Q ss_pred CccccccCCcc-ccCCCCCCEEeccCCCCCccch-hhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCc
Q 039535 439 GYFNVLKLPLG-MSKLGSLELLDISHSSIEELPE-ELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDR 516 (769)
Q Consensus 439 ~~~~~~~l~~~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~ 516 (769)
.+..+|.. +..+++|++|++++|.++.+|. .+..+++|++|++++|..++.++...+.++++|++|++++|.+..
T Consensus 134 ---~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 134 ---WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp ---CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred ---cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 67777654 7889999999999999998775 578999999999999888999988778999999999999998774
Q ss_pred cccccccccccCCccchhhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCcccccccccccccccc
Q 039535 517 FHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLN 596 (769)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~ 596 (769)
+ ..+..+++|+.|+++.+.+.. ..+ ..+.++++|+
T Consensus 211 ~-----------------~~~~~l~~L~~L~Ls~N~l~~--------------------------~~~--~~~~~l~~L~ 245 (452)
T 3zyi_A 211 M-----------------PNLTPLVGLEELEMSGNHFPE--------------------------IRP--GSFHGLSSLK 245 (452)
T ss_dssp C-----------------CCCTTCTTCCEEECTTSCCSE--------------------------ECG--GGGTTCTTCC
T ss_pred c-----------------ccccccccccEEECcCCcCcc--------------------------cCc--ccccCccCCC
Confidence 2 236677788888776554321 111 2566667777
Q ss_pred ceeeccccCcceEeeeeeccccccCC-CccccccceEeecCccccccccc--ccccCCccEEeecCCh
Q 039535 597 ELQIHDCRGLEELKIDYTEIAQKRRE-PFVFRSLRRVTMVSCHKLKDLTF--LVFAPNLKSISLGDCD 661 (769)
Q Consensus 597 ~L~l~~~~~l~~l~l~~~~~~~~~~~-~~~~~~L~~L~L~~~~~l~~l~~--l~~l~~L~~L~l~~~~ 661 (769)
.|+++++ .+.+..+. ...+++|+.|+|++| .++.++. +..+++|+.|+|++|+
T Consensus 246 ~L~L~~n-----------~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 246 KLWVMNS-----------QVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EEECTTS-----------CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred EEEeCCC-----------cCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 7776654 22222222 245788999999998 5666653 6678899999998875
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=5.1e-19 Score=186.83 Aligned_cols=271 Identities=19% Similarity=0.195 Sum_probs=179.7
Q ss_pred EEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccC-CccccCCCCCCEEeccC
Q 039535 385 RLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKL-PLGMSKLGSLELLDISH 463 (769)
Q Consensus 385 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l-~~~~~~l~~L~~L~l~~ 463 (769)
....+++.+..++. .-.++|++|++++|. +..++...|.++++|++|++++| .+..+ |..+..+++|++|++++
T Consensus 35 ~c~~~~~~l~~iP~-~~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n---~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 35 ICKGSSGSLNSIPS-GLTEAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSN---GINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp EEECCSTTCSSCCT-TCCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS---CCCEECTTTTTTCTTCCEEECCS
T ss_pred EeeCCCCCcccccc-cccccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCC---ccCccCHhhcCCCCCCCEEECCC
Confidence 36667777766653 223689999999887 77888877999999999999999 66665 45688999999999999
Q ss_pred CCCCccchh-hhcCCCCceeeccCCCcccccch-HHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCC
Q 039535 464 SSIEELPEE-LKLLVNLKCLNLRWTDVLNKIPR-QLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLK 541 (769)
Q Consensus 464 ~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 541 (769)
|+++.+|.. +..+++|++|++++|. +..+|. ..+..+++|++|++++|... +...+..+..++
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~--------------~~~~~~~~~~l~ 174 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTF--------------TKIQRKDFAGLT 174 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSC--------------CEECTTTTTTCC
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccc--------------cccCHHHccCCC
Confidence 999988876 7889999999999997 667776 44889999999999998533 133455677888
Q ss_pred CceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccccceeeccccCcceEeeeeeccccccC
Q 039535 542 YLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGLEELKIDYTEIAQKRR 621 (769)
Q Consensus 542 ~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~l~~~~~~~~~~ 621 (769)
+|+.|+++.+.+... . ...+..+++|++|+++++. ++ ..+.
T Consensus 175 ~L~~L~l~~n~l~~~--------------------------~--~~~l~~l~~L~~L~l~~n~-l~----------~~~~ 215 (353)
T 2z80_A 175 FLEELEIDASDLQSY--------------------------E--PKSLKSIQNVSHLILHMKQ-HI----------LLLE 215 (353)
T ss_dssp EEEEEEEEETTCCEE--------------------------C--TTTTTTCSEEEEEEEECSC-ST----------THHH
T ss_pred CCCEEECCCCCcCcc--------------------------C--HHHHhccccCCeecCCCCc-cc----------cchh
Confidence 888888886643321 0 0244555666666655542 11 1111
Q ss_pred CC-ccccccceEeecCcccccccc-----cccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCccccccccc
Q 039535 622 EP-FVFRSLRRVTMVSCHKLKDLT-----FLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSY 695 (769)
Q Consensus 622 ~~-~~~~~L~~L~L~~~~~l~~l~-----~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 695 (769)
.. ..+++|+.|++++|. ++.++ .....+.++.++++++..-.. .+..+|+ .+..+++|+.|++++
T Consensus 216 ~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~-----~l~~l~~---~l~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 216 IFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDE-----SLFQVMK---LLNQISGLLELEFSR 286 (353)
T ss_dssp HHHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHH-----HHHHHHH---HHHTCTTCCEEECCS
T ss_pred hhhhhcccccEEECCCCc-cccccccccccccccchhhccccccccccCc-----chhhhHH---HHhcccCCCEEECCC
Confidence 11 135667777777763 34322 223355666666666532111 0111222 233556777888877
Q ss_pred ccccccccCCC-CCCCCcceEeecCCccCC
Q 039535 696 LLALKSIYWKP-LPFTYLKEMVVNGCDQLK 724 (769)
Q Consensus 696 c~~l~~~~~~~-~~~~~L~~L~i~~C~~L~ 724 (769)
| .++.++... ..+++|++|++++|+-..
T Consensus 287 N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 287 N-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred C-CCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 4 666777654 567778888887775433
No 53
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=7.6e-19 Score=183.80 Aligned_cols=284 Identities=16% Similarity=0.161 Sum_probs=186.4
Q ss_pred CCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCC-ccccCCCCCCEEeccCCCCCcc-chhhhcCCCCc
Q 039535 403 PHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLP-LGMSKLGSLELLDISHSSIEEL-PEELKLLVNLK 480 (769)
Q Consensus 403 ~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~ 480 (769)
.+++.++++++. +..+|..+ .++|++|++++| .+..++ ..+..+++|++|++++|+++.+ |..+..+++|+
T Consensus 33 c~l~~l~~~~~~-l~~ip~~~---~~~l~~L~l~~n---~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 105 (332)
T 2ft3_A 33 CHLRVVQCSDLG-LKAVPKEI---SPDTTLLDLQNN---DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105 (332)
T ss_dssp EETTEEECCSSC-CSSCCSCC---CTTCCEEECCSS---CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred ccCCEEECCCCC-ccccCCCC---CCCCeEEECCCC---cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCC
Confidence 368999999886 77888754 378999999999 666664 5789999999999999999966 67799999999
Q ss_pred eeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCChhhHHHHH
Q 039535 481 CLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILL 560 (769)
Q Consensus 481 ~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~ 560 (769)
+|++++|. +..+|.. + .++|++|++++|.+..+ ....+..+++|+.|+++.+.+.......
T Consensus 106 ~L~L~~n~-l~~l~~~-~--~~~L~~L~l~~n~i~~~---------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 166 (332)
T 2ft3_A 106 KLYISKNH-LVEIPPN-L--PSSLVELRIHDNRIRKV---------------PKGVFSGLRNMNCIEMGGNPLENSGFEP 166 (332)
T ss_dssp EEECCSSC-CCSCCSS-C--CTTCCEEECCSSCCCCC---------------CSGGGSSCSSCCEEECCSCCCBGGGSCT
T ss_pred EEECCCCc-CCccCcc-c--cccCCEEECCCCccCcc---------------CHhHhCCCccCCEEECCCCccccCCCCc
Confidence 99999997 6788875 2 28999999999988643 3445788999999998877654321111
Q ss_pred hcccccccceeEEEeccCCCccccccccccccccccceeeccccCcceEeeeeeccccccC-CCccccccceEeecCccc
Q 039535 561 SSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGLEELKIDYTEIAQKRR-EPFVFRSLRRVTMVSCHK 639 (769)
Q Consensus 561 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~ 639 (769)
...... +++.|.++++....... .+ .+.|+.+++++|.+.+..+ ....+++|+.|++++|.
T Consensus 167 ~~~~~l-~L~~L~l~~n~l~~l~~---~~-------------~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~- 228 (332)
T 2ft3_A 167 GAFDGL-KLNYLRISEAKLTGIPK---DL-------------PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ- 228 (332)
T ss_dssp TSSCSC-CCSCCBCCSSBCSSCCS---SS-------------CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-
T ss_pred ccccCC-ccCEEECcCCCCCccCc---cc-------------cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-
Confidence 111111 44444444433222111 11 1244455555555555543 23567888888888884
Q ss_pred ccccc--cccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCcccccccccccccccccCCCC-------CCC
Q 039535 640 LKDLT--FLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALKSIYWKPL-------PFT 710 (769)
Q Consensus 640 l~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-------~~~ 710 (769)
++.++ .+..+++|+.|++++|.. +.+|. .+..+++|++|+++++ .++.++.... .++
T Consensus 229 l~~~~~~~~~~l~~L~~L~L~~N~l----------~~lp~---~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~ 294 (332)
T 2ft3_A 229 IRMIENGSLSFLPTLRELHLDNNKL----------SRVPA---GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRA 294 (332)
T ss_dssp CCCCCTTGGGGCTTCCEEECCSSCC----------CBCCT---TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSC
T ss_pred CCcCChhHhhCCCCCCEEECCCCcC----------eecCh---hhhcCccCCEEECCCC-CCCccChhHccccccccccc
Confidence 55544 377788888888887632 23333 2446678888888884 6776654321 146
Q ss_pred CcceEeecCCccC--CCcCCCCC-cccccceEEeccc
Q 039535 711 YLKEMVVNGCDQL--KKLPLDSS-CAEERKFVIRGEA 744 (769)
Q Consensus 711 ~L~~L~i~~C~~L--~~lp~~~~-~~~l~~~~i~~~~ 744 (769)
+|+.|++.+++-. ...|.... .++|+.+.+++++
T Consensus 295 ~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 7888888887643 22222222 2667777776553
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=189.81 Aligned_cols=239 Identities=24% Similarity=0.306 Sum_probs=186.0
Q ss_pred ceEEEEcCCccccCCCCCCCcceeEEEEeecccccc--CCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeecc
Q 039535 361 INFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVL--SEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNI 438 (769)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~ 438 (769)
...+.+.+.++..+|... .++++.|+|++|.+..+ ..+..+++|++|++++|. +..++...|.++++|++|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCC
Confidence 345778888888888633 47899999999999665 357899999999999987 77888778999999999999999
Q ss_pred CccccccCCc-cccCCCCCCEEeccCCCCCccch-hhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCc
Q 039535 439 GYFNVLKLPL-GMSKLGSLELLDISHSSIEELPE-ELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDR 516 (769)
Q Consensus 439 ~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~ 516 (769)
.+..+|. .+..+++|++|++++|.|+.++. .+..+++|++|++++|..+..++...+.++++|++|++++|.+..
T Consensus 123 ---~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 123 ---RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp ---CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred ---cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 6777765 57899999999999999997765 588899999999999888888888778999999999999998774
Q ss_pred cccccccccccCCccchhhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCcccccccccccccccc
Q 039535 517 FHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLN 596 (769)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~ 596 (769)
+ ..+..+++|+.|+++.+.+.. ..+ ..+..+++|+
T Consensus 200 ~-----------------~~~~~l~~L~~L~Ls~N~l~~--------------------------~~~--~~~~~l~~L~ 234 (440)
T 3zyj_A 200 I-----------------PNLTPLIKLDELDLSGNHLSA--------------------------IRP--GSFQGLMHLQ 234 (440)
T ss_dssp C-----------------CCCTTCSSCCEEECTTSCCCE--------------------------ECT--TTTTTCTTCC
T ss_pred c-----------------cccCCCcccCEEECCCCccCc--------------------------cCh--hhhccCccCC
Confidence 3 235677778888776543321 111 2566667777
Q ss_pred ceeeccccCcceEeeeeeccccccCC-CccccccceEeecCccccccccc--ccccCCccEEeecCCh
Q 039535 597 ELQIHDCRGLEELKIDYTEIAQKRRE-PFVFRSLRRVTMVSCHKLKDLTF--LVFAPNLKSISLGDCD 661 (769)
Q Consensus 597 ~L~l~~~~~l~~l~l~~~~~~~~~~~-~~~~~~L~~L~L~~~~~l~~l~~--l~~l~~L~~L~l~~~~ 661 (769)
+|+++++ .+.+..+. ...+++|++|+|++| .++.++. +..+++|+.|+|++|+
T Consensus 235 ~L~L~~n-----------~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 235 KLWMIQS-----------QIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EEECTTC-----------CCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EEECCCC-----------ceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 7776664 23332222 245789999999998 4666654 6778999999998875
No 55
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=4.8e-18 Score=194.96 Aligned_cols=130 Identities=24% Similarity=0.250 Sum_probs=107.9
Q ss_pred CCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCc-cccCCCCCCEEeccCCCCCccchh-hhcCCCCc
Q 039535 403 PHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPL-GMSKLGSLELLDISHSSIEELPEE-LKLLVNLK 480 (769)
Q Consensus 403 ~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~ 480 (769)
+++++|+|++|. +..+++..|.++++|++|+|++| .+..+++ .+.++++|++|+|++|+|+.+|.. +..+++|+
T Consensus 52 ~~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N---~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 52 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC---EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTC---CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred cCCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCC---cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence 479999999997 88999888999999999999999 7777765 588999999999999999988864 78999999
Q ss_pred eeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeC
Q 039535 481 CLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLG 551 (769)
Q Consensus 481 ~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~ 551 (769)
+|++++|. +..+|...++++++|++|++++|.+..+. .+..++.+++|+.|+++.+
T Consensus 128 ~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~--------------~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 128 KLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFK--------------LPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp EEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCC--------------CCGGGGGCTTCCEEECCSS
T ss_pred EEECCCCc-CCCCChhhhhcCcccCeeccccCccccCC--------------CchhhccchhhhhhcccCc
Confidence 99999997 77888766899999999999999886432 3344455555555555443
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=5.1e-18 Score=190.09 Aligned_cols=253 Identities=21% Similarity=0.196 Sum_probs=159.7
Q ss_pred ceEEEEcCCccccCCCCCCCcceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCc
Q 039535 361 INFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGY 440 (769)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~ 440 (769)
...+.+.+.++..+|.... ++++.|.+++|.+..++. .+++|++|++++|. +..+|. .+++|++|++++|
T Consensus 42 l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N-- 111 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQ-LTSLPV----LPPGLLELSIFSN-- 111 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCC-CSCCCC----CCTTCCEEEECSC--
T ss_pred CcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCc-CCcCCC----CCCCCCEEECcCC--
Confidence 4567777777777776333 788888888888876665 57888888888887 666665 5788888888888
Q ss_pred cccccCCccccCCCCCCEEeccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccc
Q 039535 441 FNVLKLPLGMSKLGSLELLDISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEA 520 (769)
Q Consensus 441 ~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~ 520 (769)
.+..+|. .+.+|++|++++|+++.+|.. +++|++|++++|. +..+|. .+.+|+.|++++|.+..+
T Consensus 112 -~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~~l--- 176 (622)
T 3g06_A 112 -PLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQLTSL--- 176 (622)
T ss_dssp -CCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSCC---
T ss_pred -cCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEECCCCCCCCC---
Confidence 6666665 457888888888888888763 4788888888886 666664 457788888888877642
Q ss_pred cccccccCCccchhhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccccceee
Q 039535 521 SEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQI 600 (769)
Q Consensus 521 ~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l 600 (769)
+ ..+++|+.|+++.+.+..++ ...++|+.|.+.++....... .+++
T Consensus 177 -------------~---~~~~~L~~L~Ls~N~l~~l~------~~~~~L~~L~L~~N~l~~l~~------~~~~------ 222 (622)
T 3g06_A 177 -------------P---MLPSGLQELSVSDNQLASLP------TLPSELYKLWAYNNRLTSLPA------LPSG------ 222 (622)
T ss_dssp -------------C---CCCTTCCEEECCSSCCSCCC------CCCTTCCEEECCSSCCSSCCC------CCTT------
T ss_pred -------------c---ccCCCCcEEECCCCCCCCCC------CccchhhEEECcCCcccccCC------CCCC------
Confidence 1 34577788877766554321 122455555555443322110 1123
Q ss_pred ccccCcceEeeeeeccccccCCCccccccceEeecCcccccccccccccCCccEEeecCChhhhhhhccCccCCcccccC
Q 039535 601 HDCRGLEELKIDYTEIAQKRREPFVFRSLRRVTMVSCHKLKDLTFLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMG 680 (769)
Q Consensus 601 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 680 (769)
|+.|++++|.+++++ ..+++|+.|+|++| .++.++. .+++|+.|+|++|.. +.+|..
T Consensus 223 -----L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N~L----------~~lp~~-- 279 (622)
T 3g06_A 223 -----LKELIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRNQL----------TRLPES-- 279 (622)
T ss_dssp -----CCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCC----------CSCCGG--
T ss_pred -----CCEEEccCCccCcCC---CCCCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCCCC----------CcCCHH--
Confidence 333333333333322 23566666666666 4555555 456666666666521 222322
Q ss_pred CCCCCCcccccccccc
Q 039535 681 HLSPFENLQNLDLSYL 696 (769)
Q Consensus 681 ~~~~~~~L~~L~l~~c 696 (769)
+..+++|+.|+|++|
T Consensus 280 -l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 280 -LIHLSSETTVNLEGN 294 (622)
T ss_dssp -GGGSCTTCEEECCSC
T ss_pred -HhhccccCEEEecCC
Confidence 334556666666664
No 57
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.77 E-value=2e-18 Score=178.52 Aligned_cols=253 Identities=17% Similarity=0.204 Sum_probs=189.6
Q ss_pred CCceEEEeecccchh--cccCcccccCCcccEEEeec-cCccccc-cCCccccCCCCCCEEeccCCCCC-ccchhhhcCC
Q 039535 403 PHLLTLFLDFNRELM--MIAGGYFQFMPSLKVLKISN-IGYFNVL-KLPLGMSKLGSLELLDISHSSIE-ELPEELKLLV 477 (769)
Q Consensus 403 ~~L~~L~l~~~~~~~--~i~~~~~~~l~~L~~L~l~~-~~~~~~~-~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~ 477 (769)
.+++.|++++|...+ .+|. .+.++++|++|++++ | .+. .+|..++.+++|++|++++|.++ .+|..+..++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~-~l~~l~~L~~L~L~~~n---~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGIN---NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCG-GGGGCTTCSEEEEEEET---TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccCh-hHhCCCCCCeeeCCCCC---cccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 679999999998433 4555 589999999999995 6 443 57888999999999999999998 8899999999
Q ss_pred CCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCC-CceEEEEEeCChhhH
Q 039535 478 NLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLK-YLEVLELTLGSYHAL 556 (769)
Q Consensus 478 ~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~l~l~~~~~~~~ 556 (769)
+|++|++++|...+.+|.. +..+++|++|++++|.+. ...+..+..++ +|+.|+++.+.+..
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~---------------~~~p~~l~~l~~~L~~L~L~~N~l~~- 188 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRIS---------------GAIPDSYGSFSKLFTSMTISRNRLTG- 188 (313)
T ss_dssp TCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCE---------------EECCGGGGCCCTTCCEEECCSSEEEE-
T ss_pred CCCEEeCCCCccCCcCChH-HhcCCCCCeEECcCCccc---------------CcCCHHHhhhhhcCcEEECcCCeeec-
Confidence 9999999999855577876 899999999999999875 33566777777 88888877553220
Q ss_pred HHHHhcccccccceeEEEeccCCCccccccccccccccccceeeccccCcceEeeeeeccccccCC-CccccccceEeec
Q 039535 557 QILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGLEELKIDYTEIAQKRRE-PFVFRSLRRVTMV 635 (769)
Q Consensus 557 ~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~l~~~~~~~~~~~-~~~~~~L~~L~L~ 635 (769)
.+ ...+..++ |++|++++ |.+.+..+. ...+++|+.|+|+
T Consensus 189 -----------~~----------------~~~~~~l~-L~~L~Ls~-----------N~l~~~~~~~~~~l~~L~~L~L~ 229 (313)
T 1ogq_A 189 -----------KI----------------PPTFANLN-LAFVDLSR-----------NMLEGDASVLFGSDKNTQKIHLA 229 (313)
T ss_dssp -----------EC----------------CGGGGGCC-CSEEECCS-----------SEEEECCGGGCCTTSCCSEEECC
T ss_pred -----------cC----------------ChHHhCCc-ccEEECcC-----------CcccCcCCHHHhcCCCCCEEECC
Confidence 00 01334443 55555554 444333332 2568999999999
Q ss_pred CcccccccccccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCcccccccccccccccccCCCCCCCCcceE
Q 039535 636 SCHKLKDLTFLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALKSIYWKPLPFTYLKEM 715 (769)
Q Consensus 636 ~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L 715 (769)
+|.....++.+..+++|++|++++|.... .+|. .+..+++|++|++++|.--..+|.. ..+++|+.+
T Consensus 230 ~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~---------~~p~---~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l 296 (313)
T 1ogq_A 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYG---------TLPQ---GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS 296 (313)
T ss_dssp SSEECCBGGGCCCCTTCCEEECCSSCCEE---------CCCG---GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGG
T ss_pred CCceeeecCcccccCCCCEEECcCCcccC---------cCCh---HHhcCcCCCEEECcCCcccccCCCC-ccccccChH
Confidence 99655456677888999999999875422 2233 3456779999999997444467765 678999999
Q ss_pred eecCCccCCCcCC
Q 039535 716 VVNGCDQLKKLPL 728 (769)
Q Consensus 716 ~i~~C~~L~~lp~ 728 (769)
++.+++.+...|.
T Consensus 297 ~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 297 AYANNKCLCGSPL 309 (313)
T ss_dssp GTCSSSEEESTTS
T ss_pred HhcCCCCccCCCC
Confidence 9999988877664
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=1.1e-17 Score=187.34 Aligned_cols=257 Identities=17% Similarity=0.146 Sum_probs=186.6
Q ss_pred cceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEe
Q 039535 381 ENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLD 460 (769)
Q Consensus 381 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~ 460 (769)
.+++.++++++.+..++... .++|++|++++|. +..+|. .+++|++|++++| .+..+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l-~~~L~~L~L~~N~-l~~lp~----~l~~L~~L~Ls~N---~l~~lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCL-PAHITTLVIPDNN-LTSLPA----LPPELRTLEVSGN---QLTSLPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCC-CTTCSEEEECSCC-CSCCCC----CCTTCCEEEECSC---CCSCCCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcCccChhh-CCCCcEEEecCCC-CCCCCC----cCCCCCEEEcCCC---cCCcCCC---CCCCCCEEE
Confidence 35889999999997776422 2899999999887 777776 4799999999999 6777776 679999999
Q ss_pred ccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcC
Q 039535 461 ISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGL 540 (769)
Q Consensus 461 l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 540 (769)
+++|+++.+|. .+++|+.|++++|. +..+|. .+++|++|++++|.+..++ ..+
T Consensus 108 Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~----~l~~L~~L~Ls~N~l~~l~-------------------~~~ 160 (622)
T 3g06_A 108 IFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPV----LPPGLQELSVSDNQLASLP-------------------ALP 160 (622)
T ss_dssp ECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSCCC-------------------CCC
T ss_pred CcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCC----CCCCCCEEECcCCcCCCcC-------------------Ccc
Confidence 99999999887 67899999999997 777886 3589999999999877431 134
Q ss_pred CCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccccceeeccccCcceEeeeeecccccc
Q 039535 541 KYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGLEELKIDYTEIAQKR 620 (769)
Q Consensus 541 ~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~l~~~~~~~~~ 620 (769)
++|+.|+++.+.+..++ ....+|+.|.++++....... .+++|+.| ++++|.+..++
T Consensus 161 ~~L~~L~L~~N~l~~l~------~~~~~L~~L~Ls~N~l~~l~~------~~~~L~~L-----------~L~~N~l~~l~ 217 (622)
T 3g06_A 161 SELCKLWAYNNQLTSLP------MLPSGLQELSVSDNQLASLPT------LPSELYKL-----------WAYNNRLTSLP 217 (622)
T ss_dssp TTCCEEECCSSCCSCCC------CCCTTCCEEECCSSCCSCCCC------CCTTCCEE-----------ECCSSCCSSCC
T ss_pred CCCCEEECCCCCCCCCc------ccCCCCcEEECCCCCCCCCCC------ccchhhEE-----------ECcCCcccccC
Confidence 67888888877665433 234567777776654332211 12344444 44444444333
Q ss_pred CCCccccccceEeecCcccccccccccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCcccccccccccccc
Q 039535 621 REPFVFRSLRRVTMVSCHKLKDLTFLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALK 700 (769)
Q Consensus 621 ~~~~~~~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 700 (769)
. .+++|+.|+|++| .++.++ ..+++|+.|+|++|. + +.+|. .+++|+.|+|++| .++
T Consensus 218 ~---~~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N~-L---------~~lp~------~~~~L~~L~Ls~N-~L~ 274 (622)
T 3g06_A 218 A---LPSGLKELIVSGN-RLTSLP--VLPSELKELMVSGNR-L---------TSLPM------LPSGLLSLSVYRN-QLT 274 (622)
T ss_dssp C---CCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSSC-C---------SCCCC------CCTTCCEEECCSS-CCC
T ss_pred C---CCCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCCC-C---------CcCCc------ccccCcEEeCCCC-CCC
Confidence 2 3578888888888 566666 556888888888863 2 23332 4468888888885 777
Q ss_pred cccCCCCCCCCcceEeecCCcc
Q 039535 701 SIYWKPLPFTYLKEMVVNGCDQ 722 (769)
Q Consensus 701 ~~~~~~~~~~~L~~L~i~~C~~ 722 (769)
.+|.....+++|+.|++++|+-
T Consensus 275 ~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 275 RLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp SCCGGGGGSCTTCEEECCSCCC
T ss_pred cCCHHHhhccccCEEEecCCCC
Confidence 8887777788888888888753
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=3.2e-18 Score=176.91 Aligned_cols=111 Identities=20% Similarity=0.216 Sum_probs=67.5
Q ss_pred CCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCccchhhhcCCCCcee
Q 039535 403 PHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEELPEELKLLVNLKCL 482 (769)
Q Consensus 403 ~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L 482 (769)
++|++|++++|. +..++..+|.++++|++|++++|.+......+..+..+++|++|++++|.++.+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence 466666766665 5566665566677777777776632222222444555666777777777666666666666777777
Q ss_pred eccCCCcccccch-HHhcCCCcCcEEEeeccCCC
Q 039535 483 NLRWTDVLNKIPR-QLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 483 ~l~~~~~l~~lp~-~~~~~l~~L~~L~l~~~~~~ 515 (769)
++++|. +..++. ..+..+++|++|++++|.+.
T Consensus 107 ~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~ 139 (306)
T 2z66_A 107 DFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTR 139 (306)
T ss_dssp ECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCE
T ss_pred ECCCCc-ccccccchhhhhccCCCEEECCCCcCC
Confidence 776665 444432 23566667777777666544
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=8.9e-19 Score=181.73 Aligned_cols=121 Identities=22% Similarity=0.204 Sum_probs=52.5
Q ss_pred ceeEEEEeeccccccC--CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEE
Q 039535 382 NVRRLSLMQNQIKVLS--EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELL 459 (769)
Q Consensus 382 ~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L 459 (769)
+++.|++++|.+..+. .+..+++|++|++++|. +..+++ +..+++|++|++++| .+..++ ..++|++|
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~L~Ls~n---~l~~l~----~~~~L~~L 104 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD--LESLSTLRTLDLNNN---YVQELL----VGPSIETL 104 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE--ETTCTTCCEEECCSS---EEEEEE----ECTTCCEE
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh--hhhcCCCCEEECcCC---cccccc----CCCCcCEE
Confidence 4445555554443332 23444555555555444 322222 444555555555554 333222 12445555
Q ss_pred eccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCC
Q 039535 460 DISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 460 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 515 (769)
++++|.++.++. ..+++|++|++++|. +..+++..+..+++|++|++++|.+.
T Consensus 105 ~l~~n~l~~~~~--~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 105 HAANNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp ECCSSCCSEEEE--CCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred ECCCCccCCcCc--cccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCC
Confidence 555554443332 123445555555444 33333222444445555555544443
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=1.3e-17 Score=182.36 Aligned_cols=239 Identities=19% Similarity=0.243 Sum_probs=147.4
Q ss_pred EEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCC-ccccCCCCCCEEeccC
Q 039535 385 RLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLP-LGMSKLGSLELLDISH 463 (769)
Q Consensus 385 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~-~~~~~l~~L~~L~l~~ 463 (769)
.+...++.+..++. .-.++|+.|++++|. +..+++..|.++++|++|++++| .+..++ ..+..+++|++|++++
T Consensus 58 ~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n---~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQ-GIPSNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRN---SIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp EEECCSSCCSSCCS-CCCTTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSS---CCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEECCCCcCccCC-CCCCCccEEECcCCc-CceECHHHcCCCCCCCEEECCCC---ccCCcChhhccCcccCCEEECCC
Confidence 34444444433332 112566777777665 55555555666777777777766 444443 4556666777777777
Q ss_pred CCCCccchh-hhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCC
Q 039535 464 SSIEELPEE-LKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKY 542 (769)
Q Consensus 464 ~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 542 (769)
|.++.+|.. +..+++|++|++++|. +..+|...+.++++|++|++++|....
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~-------------------------- 185 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLE-------------------------- 185 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCC--------------------------
T ss_pred CcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCcc--------------------------
Confidence 766665543 5566667777776665 455555446666666666666543221
Q ss_pred ceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccccceeeccccCcceEeeeeeccccccCC
Q 039535 543 LEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGLEELKIDYTEIAQKRRE 622 (769)
Q Consensus 543 L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~l~~~~~~~~~~~ 622 (769)
.+. ...+.++++|++|+++++. +.++ +.
T Consensus 186 -------------------------~i~---------------~~~~~~l~~L~~L~L~~n~-----------l~~~-~~ 213 (452)
T 3zyi_A 186 -------------------------YIS---------------EGAFEGLFNLKYLNLGMCN-----------IKDM-PN 213 (452)
T ss_dssp -------------------------EEC---------------TTTTTTCTTCCEEECTTSC-----------CSSC-CC
T ss_pred -------------------------ccC---------------hhhccCCCCCCEEECCCCc-----------cccc-cc
Confidence 000 0145566777777776652 2222 22
Q ss_pred CccccccceEeecCcccccccc--cccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCcccccccccccccc
Q 039535 623 PFVFRSLRRVTMVSCHKLKDLT--FLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALK 700 (769)
Q Consensus 623 ~~~~~~L~~L~L~~~~~l~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 700 (769)
...+++|++|+|++|. ++.+. .+..+++|+.|+|++|.. +.+ +. ..+..+++|+.|+|++| .++
T Consensus 214 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l-~~~---------~~--~~~~~l~~L~~L~L~~N-~l~ 279 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQV-SLI---------ER--NAFDGLASLVELNLAHN-NLS 279 (452)
T ss_dssp CTTCTTCCEEECTTSC-CSEECGGGGTTCTTCCEEECTTSCC-CEE---------CT--TTTTTCTTCCEEECCSS-CCS
T ss_pred ccccccccEEECcCCc-CcccCcccccCccCCCEEEeCCCcC-ceE---------CH--HHhcCCCCCCEEECCCC-cCC
Confidence 3568899999999995 55543 477889999999988643 221 11 24567789999999985 777
Q ss_pred cccCC-CCCCCCcceEeecCCc
Q 039535 701 SIYWK-PLPFTYLKEMVVNGCD 721 (769)
Q Consensus 701 ~~~~~-~~~~~~L~~L~i~~C~ 721 (769)
.++.. ...+++|+.|++.+++
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 280 SLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCCTTSSTTCTTCCEEECCSSC
T ss_pred ccChHHhccccCCCEEEccCCC
Confidence 77754 3468899999998875
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=2.1e-17 Score=179.89 Aligned_cols=240 Identities=17% Similarity=0.248 Sum_probs=143.0
Q ss_pred EEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCC-ccccCCCCCCEEeccC
Q 039535 385 RLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLP-LGMSKLGSLELLDISH 463 (769)
Q Consensus 385 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~-~~~~~l~~L~~L~l~~ 463 (769)
.+...++.+..++. .-.++++.|++++|. +..++...|.++++|++|++++| .+..++ ..+.++++|++|++++
T Consensus 47 ~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n---~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 47 KVICVRKNLREVPD-GISTNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRN---HIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp EEECCSCCCSSCCS-CCCTTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSS---CCCEECGGGGTTCSSCCEEECCS
T ss_pred EEEeCCCCcCcCCC-CCCCCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCC---cCCccChhhccCCccCCEEECCC
Confidence 34444444433332 112556666666665 55555555666666666666666 444443 3455666666666666
Q ss_pred CCCCccch-hhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCC
Q 039535 464 SSIEELPE-ELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKY 542 (769)
Q Consensus 464 ~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 542 (769)
|+++.+|. .+..+++|++|++++|. +..++...+..+++|++|++++|....
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~-------------------------- 174 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLS-------------------------- 174 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCC--------------------------
T ss_pred CcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcc--------------------------
Confidence 66665554 35566666666666665 445554445566666666665543221
Q ss_pred ceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccccceeeccccCcceEeeeeeccccccCC
Q 039535 543 LEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGLEELKIDYTEIAQKRRE 622 (769)
Q Consensus 543 L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~l~~~~~~~~~~~ 622 (769)
.+. ...+.++++|++|+++++ .++.+ +.
T Consensus 175 -------------------------~i~---------------~~~~~~l~~L~~L~L~~n-~l~~~-----------~~ 202 (440)
T 3zyj_A 175 -------------------------YIS---------------EGAFEGLSNLRYLNLAMC-NLREI-----------PN 202 (440)
T ss_dssp -------------------------EEC---------------TTTTTTCSSCCEEECTTS-CCSSC-----------CC
T ss_pred -------------------------eeC---------------cchhhcccccCeecCCCC-cCccc-----------cc
Confidence 000 024566677777777665 22221 22
Q ss_pred CccccccceEeecCcccccccc--cccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCcccccccccccccc
Q 039535 623 PFVFRSLRRVTMVSCHKLKDLT--FLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALK 700 (769)
Q Consensus 623 ~~~~~~L~~L~L~~~~~l~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 700 (769)
...+++|++|+|++| .++.+. .+..+++|+.|+|++|.. +.+ +. ..+..+++|+.|+|++| .++
T Consensus 203 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~---------~~--~~~~~l~~L~~L~L~~N-~l~ 268 (440)
T 3zyj_A 203 LTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQI-QVI---------ER--NAFDNLQSLVEINLAHN-NLT 268 (440)
T ss_dssp CTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCC-CEE---------CT--TSSTTCTTCCEEECTTS-CCC
T ss_pred cCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCce-eEE---------Ch--hhhcCCCCCCEEECCCC-CCC
Confidence 346788999999998 455543 477888999999988632 222 11 24557788999999885 777
Q ss_pred cccCCC-CCCCCcceEeecCCcc
Q 039535 701 SIYWKP-LPFTYLKEMVVNGCDQ 722 (769)
Q Consensus 701 ~~~~~~-~~~~~L~~L~i~~C~~ 722 (769)
.++... ..+++|+.|++.+++-
T Consensus 269 ~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 269 LLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCCTTTTSSCTTCCEEECCSSCE
T ss_pred ccChhHhccccCCCEEEcCCCCc
Confidence 776543 4678888888887753
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=6.7e-18 Score=172.47 Aligned_cols=147 Identities=24% Similarity=0.361 Sum_probs=81.7
Q ss_pred EEEcCCccccCCCCCCCcceeEEEEeeccccccC--CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCcc
Q 039535 364 LVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLS--EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYF 441 (769)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~ 441 (769)
+.+.+.++..+|. ...++++.|++++|.+..++ .+..+++|++|++++|. +..+++..|..+++|++|++++|.
T Consensus 16 ~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-- 91 (285)
T 1ozn_A 16 TSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNA-- 91 (285)
T ss_dssp EECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCT--
T ss_pred EEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCC--
Confidence 4455555555553 22356666666666664443 25556666666666554 445544446666666666666662
Q ss_pred ccccC-CccccCCCCCCEEeccCCCCCcc-chhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCC
Q 039535 442 NVLKL-PLGMSKLGSLELLDISHSSIEEL-PEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 442 ~~~~l-~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 515 (769)
.+..+ |..+..+++|++|++++|.++.+ |..+..+++|++|++++|. +..++...++.+++|++|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCccc
Confidence 13344 34455566666666666666644 3345556666666666665 44444443555666666666665543
No 64
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=1.5e-18 Score=197.25 Aligned_cols=269 Identities=17% Similarity=0.121 Sum_probs=159.5
Q ss_pred ccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCC----ccchhhhcCCCCceeeccCCCcccccchHHhcC
Q 039535 425 QFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIE----ELPEELKLLVNLKCLNLRWTDVLNKIPRQLISN 500 (769)
Q Consensus 425 ~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~----~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~ 500 (769)
..+++|++|++++| .+..+|..+..+++|++|+++++... ..+..+..+++|+.|+++++. ...+|.. +..
T Consensus 217 ~~~~~L~~L~L~~~---~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~-~~~ 291 (592)
T 3ogk_B 217 RNCRSLVSVKVGDF---EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPIL-FPF 291 (592)
T ss_dssp HHCTTCCEEECSSC---BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGG-GGG
T ss_pred hhCCCCcEEeccCc---cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHH-Hhh
Confidence 34555555555554 33334444444555555555432111 222234444555555555542 3445543 677
Q ss_pred CCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEec----
Q 039535 501 LSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFG---- 576 (769)
Q Consensus 501 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~---- 576 (769)
+++|++|++++|.+. +......+..+++|+.|++. +.+. ...+......+++|+.|.+.+
T Consensus 292 ~~~L~~L~Ls~~~l~--------------~~~~~~~~~~~~~L~~L~L~-~~~~-~~~l~~~~~~~~~L~~L~L~~g~~~ 355 (592)
T 3ogk_B 292 AAQIRKLDLLYALLE--------------TEDHCTLIQKCPNLEVLETR-NVIG-DRGLEVLAQYCKQLKRLRIERGADE 355 (592)
T ss_dssp GGGCCEEEETTCCCC--------------HHHHHHHHTTCTTCCEEEEE-GGGH-HHHHHHHHHHCTTCCEEEEECCCCS
T ss_pred cCCCcEEecCCCcCC--------------HHHHHHHHHhCcCCCEEecc-CccC-HHHHHHHHHhCCCCCEEEeecCccc
Confidence 888999999888744 23334556889999999988 3322 222222223346799999995
Q ss_pred ------cCCCccccccccccccccccceeecc--------------ccCcceEeee----eecccccc------CCCccc
Q 039535 577 ------FRGTKYFIDATAFADLKHLNELQIHD--------------CRGLEELKID----YTEIAQKR------REPFVF 626 (769)
Q Consensus 577 ------~~~~~~~~~~~~l~~~~~L~~L~l~~--------------~~~l~~l~l~----~~~~~~~~------~~~~~~ 626 (769)
|...+..........+++|++|+++. |++|+.|+++ .+.+++.+ .....+
T Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~ 435 (592)
T 3ogk_B 356 QGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435 (592)
T ss_dssp STTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC
T ss_pred cccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC
Confidence 66666554444456688899998832 6678888886 33444321 112457
Q ss_pred cccceEeecCccc-ccc--cccc-cccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCccccccccccccccc-
Q 039535 627 RSLRRVTMVSCHK-LKD--LTFL-VFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALKS- 701 (769)
Q Consensus 627 ~~L~~L~L~~~~~-l~~--l~~l-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~- 701 (769)
++|++|+++.|.. +++ +..+ ..+++|+.|+|++|.. ++. +++.. +.++++|++|++++|. ++.
T Consensus 436 ~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l-~~~-------~~~~~---~~~~~~L~~L~l~~n~-l~~~ 503 (592)
T 3ogk_B 436 KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE-SDE-------GLMEF---SRGCPNLQKLEMRGCC-FSER 503 (592)
T ss_dssp TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCS-SHH-------HHHHH---HTCCTTCCEEEEESCC-CBHH
T ss_pred CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCC-CHH-------HHHHH---HhcCcccCeeeccCCC-CcHH
Confidence 8899999987653 333 2223 3478899999988752 221 11111 2356799999999986 543
Q ss_pred -ccCCCCCCCCcceEeecCCccCCCcC
Q 039535 702 -IYWKPLPFTYLKEMVVNGCDQLKKLP 727 (769)
Q Consensus 702 -~~~~~~~~~~L~~L~i~~C~~L~~lp 727 (769)
++.....+++|++|++++|. ++...
T Consensus 504 ~~~~~~~~l~~L~~L~ls~n~-it~~~ 529 (592)
T 3ogk_B 504 AIAAAVTKLPSLRYLWVQGYR-ASMTG 529 (592)
T ss_dssp HHHHHHHHCSSCCEEEEESCB-CCTTC
T ss_pred HHHHHHHhcCccCeeECcCCc-CCHHH
Confidence 23333468999999999997 66543
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=1.4e-19 Score=199.10 Aligned_cols=158 Identities=15% Similarity=0.141 Sum_probs=73.2
Q ss_pred cceeEEEEeeccccccC--C-CCCCCCceEEEeecccchhccc----CcccccCCcccEEEeeccCccccccC-Ccc-cc
Q 039535 381 ENVRRLSLMQNQIKVLS--E-VPTCPHLLTLFLDFNRELMMIA----GGYFQFMPSLKVLKISNIGYFNVLKL-PLG-MS 451 (769)
Q Consensus 381 ~~l~~l~l~~~~~~~~~--~-~~~~~~L~~L~l~~~~~~~~i~----~~~~~~l~~L~~L~l~~~~~~~~~~l-~~~-~~ 451 (769)
++++.|+++++.+.... . +..+++|++|++++|. +.... +..+..+++|++|++++| .+... +.. ..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n---~l~~~~~~~l~~ 78 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN---ELGDVGVHCVLQ 78 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC---CCHHHHHHHHHH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCC---cCChHHHHHHHH
Confidence 45566666655552221 1 3445566666666555 32110 122455566666666665 22211 111 11
Q ss_pred CCC----CCCEEeccCCCCC-----ccchhhhcCCCCceeeccCCCcccccchH----HhcCCCcCcEEEeeccCCCccc
Q 039535 452 KLG----SLELLDISHSSIE-----ELPEELKLLVNLKCLNLRWTDVLNKIPRQ----LISNLSRVRVLRMFATGYDRFH 518 (769)
Q Consensus 452 ~l~----~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~l~~lp~~----~~~~l~~L~~L~l~~~~~~~~~ 518 (769)
.+. +|++|++++|+++ .++..+..+++|++|++++|......+.. +....++|++|++++|.+....
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 222 4666666666555 23445555666666666666522111111 1112345666666666544210
Q ss_pred cccccccccCCccchhhhhhcCCCceEEEEEeCCh
Q 039535 519 EASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY 553 (769)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~ 553 (769)
.......+..+++|+.|+++.+.+
T Consensus 159 -----------~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 159 -----------CEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp -----------HHHHHHHHHHCTTCCEEECCSSBC
T ss_pred -----------HHHHHHHHhhCCCCCEEECcCCCc
Confidence 011234444555666666555544
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=6.3e-18 Score=174.67 Aligned_cols=169 Identities=25% Similarity=0.307 Sum_probs=132.4
Q ss_pred EEEEcCCccccCCCCCCCcceeEEEEeeccccccCC--CCCCCCceEEEeecccchhccc--CcccccCCcccEEEeecc
Q 039535 363 FLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLSE--VPTCPHLLTLFLDFNRELMMIA--GGYFQFMPSLKVLKISNI 438 (769)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~i~--~~~~~~l~~L~~L~l~~~ 438 (769)
.+.+.+.++..+|. .-.++++.|.+++|.+..++. +..+++|++|++++|. +..+. +..+..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCC
Confidence 46777778888876 334789999999999977764 6899999999999987 54442 223667999999999999
Q ss_pred CccccccCCccccCCCCCCEEeccCCCCCccch--hhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCc
Q 039535 439 GYFNVLKLPLGMSKLGSLELLDISHSSIEELPE--ELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDR 516 (769)
Q Consensus 439 ~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~ 516 (769)
.+..+|..+..+++|++|++++|.++.++. .+..+++|++|++++|.. ...++..+..+++|++|++++|.+..
T Consensus 89 ---~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 89 ---GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp ---SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC-EECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred ---ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcC-CccchhhcccCcCCCEEECCCCcccc
Confidence 777888889999999999999999997764 688999999999999984 44444448899999999999987652
Q ss_pred cccccccccccCCccchhhhhhcCCCceEEEEEeC
Q 039535 517 FHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLG 551 (769)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~ 551 (769)
...+..+..+++|+.|+++.+
T Consensus 165 --------------~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 165 --------------NFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp --------------GEECSCCTTCTTCCEEECTTS
T ss_pred --------------ccchhHHhhCcCCCEEECCCC
Confidence 123444556666666665543
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=7.7e-19 Score=182.24 Aligned_cols=248 Identities=15% Similarity=0.113 Sum_probs=156.2
Q ss_pred CCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCccchhhhcCCCC
Q 039535 400 PTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEELPEELKLLVNL 479 (769)
Q Consensus 400 ~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L 479 (769)
..+++|++|++++|. +..+++..|.++++|++|++++| .+...++ +..+++|++|++++|.++.++ ..++|
T Consensus 31 ~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n---~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L 101 (317)
T 3o53_A 31 QSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN---VLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSI 101 (317)
T ss_dssp TTGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTS---CCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTC
T ss_pred ccCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCC---cCCcchh-hhhcCCCCEEECcCCcccccc----CCCCc
Confidence 567789999999887 77777666899999999999999 5555544 888899999999999988765 34899
Q ss_pred ceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCChhhHHHH
Q 039535 480 KCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQIL 559 (769)
Q Consensus 480 ~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l 559 (769)
++|++++|. +..++. ..+++|++|++++|.+..+ .+..+..+++|+.|+++.+.+.....
T Consensus 102 ~~L~l~~n~-l~~~~~---~~~~~L~~L~l~~N~l~~~---------------~~~~~~~l~~L~~L~Ls~N~l~~~~~- 161 (317)
T 3o53_A 102 ETLHAANNN-ISRVSC---SRGQGKKNIYLANNKITML---------------RDLDEGCRSRVQYLDLKLNEIDTVNF- 161 (317)
T ss_dssp CEEECCSSC-CSEEEE---CCCSSCEEEECCSSCCCSG---------------GGBCTGGGSSEEEEECTTSCCCEEEG-
T ss_pred CEEECCCCc-cCCcCc---cccCCCCEEECCCCCCCCc---------------cchhhhccCCCCEEECCCCCCCcccH-
Confidence 999999997 566664 3578899999999987642 33456677888888877654332110
Q ss_pred HhcccccccceeEEEeccCCCccccccccccccccccceeeccccCcceEeeeeeccccccCCCccccccceEeecCccc
Q 039535 560 LSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGLEELKIDYTEIAQKRREPFVFRSLRRVTMVSCHK 639 (769)
Q Consensus 560 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 639 (769)
......+++|++|+++++. ++.+ . ....+++|++|+|++|.
T Consensus 162 --------------------------~~~~~~l~~L~~L~L~~N~-l~~~----------~-~~~~l~~L~~L~Ls~N~- 202 (317)
T 3o53_A 162 --------------------------AELAASSDTLEHLNLQYNF-IYDV----------K-GQVVFAKLKTLDLSSNK- 202 (317)
T ss_dssp --------------------------GGGGGGTTTCCEEECTTSC-CCEE----------E-CCCCCTTCCEEECCSSC-
T ss_pred --------------------------HHHhhccCcCCEEECCCCc-Cccc----------c-cccccccCCEEECCCCc-
Confidence 0112344556666555542 2211 1 11235666666666663
Q ss_pred ccccc-cccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCccccccccccccc-ccccCCCCCCCCcceEee
Q 039535 640 LKDLT-FLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLAL-KSIYWKPLPFTYLKEMVV 717 (769)
Q Consensus 640 l~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~~~~L~~L~i 717 (769)
++.++ .+..+++|+.|++++|.. + .+|. .+..+++|+.|++++|+-. ..++.....+++|+.+++
T Consensus 203 l~~l~~~~~~l~~L~~L~L~~N~l-~---------~l~~---~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 203 LAFMGPEFQSAAGVTWISLRNNKL-V---------LIEK---ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (317)
T ss_dssp CCEECGGGGGGTTCSEEECTTSCC-C---------EECT---TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHH
T ss_pred CCcchhhhcccCcccEEECcCCcc-c---------chhh---HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEEC
Confidence 44432 355566666666666521 1 2222 2334556666666664322 233333345566666666
Q ss_pred cCCccCCCcCC
Q 039535 718 NGCDQLKKLPL 728 (769)
Q Consensus 718 ~~C~~L~~lp~ 728 (769)
.+|+.++..+.
T Consensus 270 ~~~~~l~~~~~ 280 (317)
T 3o53_A 270 QTVKKLTGQNE 280 (317)
T ss_dssp HHHHHHHSSSS
T ss_pred CCchhccCCch
Confidence 66666555443
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.71 E-value=1.5e-18 Score=197.44 Aligned_cols=131 Identities=17% Similarity=0.085 Sum_probs=67.2
Q ss_pred cceeEEEEeeccccc--cCCCC-CCCCceEEEeecccchhcc-cCcccccCCcccEEEeeccCccc--cccCCccccCCC
Q 039535 381 ENVRRLSLMQNQIKV--LSEVP-TCPHLLTLFLDFNRELMMI-AGGYFQFMPSLKVLKISNIGYFN--VLKLPLGMSKLG 454 (769)
Q Consensus 381 ~~l~~l~l~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~~i-~~~~~~~l~~L~~L~l~~~~~~~--~~~l~~~~~~l~ 454 (769)
++++.|+++++.+.. +..+. .+++|++|++++|..+... ....+.+|++|++|++++|.+.+ ...++.....++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 456666666665421 12222 4667777777766433331 12224456777777777663111 111222233556
Q ss_pred CCCEEeccCCC--CC--ccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeecc
Q 039535 455 SLELLDISHSS--IE--ELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFAT 512 (769)
Q Consensus 455 ~L~~L~l~~~~--i~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~ 512 (769)
+|++|++++|. ++ .++..+..+++|++|++++|..+..++.. +..+++|++|++..+
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGY 245 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccc
Confidence 67777776664 22 22222344566777777666444444443 555666666654433
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=8.1e-17 Score=159.66 Aligned_cols=139 Identities=15% Similarity=0.347 Sum_probs=100.2
Q ss_pred cccCCCCCCCcceeEEEEeeccccccC--CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeec-cCccccccCC
Q 039535 371 LKEAPDVKGWENVRRLSLMQNQIKVLS--EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISN-IGYFNVLKLP 447 (769)
Q Consensus 371 ~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~-~~~~~~~~l~ 447 (769)
+..+|. -.++++.|++++|.+..++ .+..+++|++|++++|..+..+++..|.++++|++|++++ | .+..++
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n---~l~~i~ 97 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR---NLTYID 97 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET---TCCEEC
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC---CeeEcC
Confidence 666666 3357888888888776554 3677888888888877556677776678888888888887 6 555555
Q ss_pred -ccccCCCCCCEEeccCCCCCccchhhhcCCCCc---eeeccCCCcccccchHHhcCCCcCc-EEEeeccCCC
Q 039535 448 -LGMSKLGSLELLDISHSSIEELPEELKLLVNLK---CLNLRWTDVLNKIPRQLISNLSRVR-VLRMFATGYD 515 (769)
Q Consensus 448 -~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~---~L~l~~~~~l~~lp~~~~~~l~~L~-~L~l~~~~~~ 515 (769)
..+..+++|++|++++|+++.+|. +..+++|+ +|++++|..+..+|...+..+++|+ +|++++|.+.
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred HHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 356677888888888888877776 66677776 8888877346677665567777777 7777776654
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=2.1e-17 Score=181.46 Aligned_cols=122 Identities=22% Similarity=0.200 Sum_probs=66.3
Q ss_pred cceeEEEEeeccccccC--CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCE
Q 039535 381 ENVRRLSLMQNQIKVLS--EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLEL 458 (769)
Q Consensus 381 ~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~ 458 (769)
++++.|++++|.+..++ .+..+++|++|++++|. +..+++ |..+++|++|++++| .+..+|. .++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N---~l~~l~~----~~~L~~ 103 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD--LESLSTLRTLDLNNN---YVQELLV----GPSIET 103 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE--CTTCTTCCEEECCSS---EEEEEEE----CTTCCE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc--cccCCCCCEEEecCC---cCCCCCC----CCCcCE
Confidence 35666666666654332 35566666666666555 333333 556666666666666 4443332 255666
Q ss_pred EeccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCC
Q 039535 459 LDISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 459 L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 515 (769)
|++++|.|+.++. ..+++|+.|++++|. +..+++..++.+++|++|++++|.+.
T Consensus 104 L~L~~N~l~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (487)
T 3oja_A 104 LHAANNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID 157 (487)
T ss_dssp EECCSSCCCCEEE--CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCC
T ss_pred EECcCCcCCCCCc--cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCC
Confidence 6666666664433 234566666666665 33332222555666666666666554
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.70 E-value=9.9e-17 Score=163.74 Aligned_cols=218 Identities=19% Similarity=0.213 Sum_probs=161.3
Q ss_pred eEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccC-CccccCCCCCCEEecc
Q 039535 384 RRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKL-PLGMSKLGSLELLDIS 462 (769)
Q Consensus 384 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l-~~~~~~l~~L~~L~l~ 462 (769)
+.++..++.+..++. ...++|++|++++|. +..++...|..+++|++|++++| .+..+ |..+..+++|++|+++
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSN---VLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSS---CCCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCC---ccceeCHhhcCCccCCCEEeCC
Confidence 456667777665542 335789999999887 77888777999999999999999 55555 6678899999999999
Q ss_pred CCC-CCcc-chhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcC
Q 039535 463 HSS-IEEL-PEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGL 540 (769)
Q Consensus 463 ~~~-i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 540 (769)
+|. ++.+ |..+..+++|++|++++|. +..+++..+..+++|++|++++|.+..+ ....++.+
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------~~~~~~~l 152 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQAL---------------PDDTFRDL 152 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCC---------------CTTTTTTC
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCccccc---------------CHhHhccC
Confidence 997 8877 5678899999999999998 5566555588999999999999987642 33446778
Q ss_pred CCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccccceeeccccCcceEeeeeecccccc
Q 039535 541 KYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGLEELKIDYTEIAQKR 620 (769)
Q Consensus 541 ~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~l~~~~~~~~~ 620 (769)
++|+.|+++.+.+..+ .. ..+..+++|++|+++++ .+.+..
T Consensus 153 ~~L~~L~l~~n~l~~~--------------------------~~--~~~~~l~~L~~L~l~~n-----------~l~~~~ 193 (285)
T 1ozn_A 153 GNLTHLFLHGNRISSV--------------------------PE--RAFRGLHSLDRLLLHQN-----------RVAHVH 193 (285)
T ss_dssp TTCCEEECCSSCCCEE--------------------------CT--TTTTTCTTCCEEECCSS-----------CCCEEC
T ss_pred CCccEEECCCCccccc--------------------------CH--HHhcCccccCEEECCCC-----------cccccC
Confidence 8888888775533210 00 13555666666666654 333332
Q ss_pred C-CCccccccceEeecCccccccccc--ccccCCccEEeecCChh
Q 039535 621 R-EPFVFRSLRRVTMVSCHKLKDLTF--LVFAPNLKSISLGDCDA 662 (769)
Q Consensus 621 ~-~~~~~~~L~~L~L~~~~~l~~l~~--l~~l~~L~~L~l~~~~~ 662 (769)
+ ....+++|+.|++++| .++.++. +..+++|+.|++++|+.
T Consensus 194 ~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 194 PHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred HhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 2 2246789999999998 4666553 77889999999988754
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=2.4e-16 Score=160.09 Aligned_cols=218 Identities=21% Similarity=0.241 Sum_probs=131.7
Q ss_pred EEEEcCCccccCCCCCCCcceeEEEEeeccccccC--CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCc
Q 039535 363 FLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLS--EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGY 440 (769)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~ 440 (769)
.+.+.+..+..+|... .++++.|++++|.+..++ .+..+++|++|++++|. +..++...|.++++|++|++++|
T Consensus 11 ~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n-- 86 (276)
T 2z62_A 11 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN-- 86 (276)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTC--
T ss_pred eEEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCC--
Confidence 4556666666666522 246777777777665443 45667777777777665 55666555677777777777777
Q ss_pred cccccCC-ccccCCCCCCEEeccCCCCCccch-hhhcCCCCceeeccCCCccc-ccchHHhcCCCcCcEEEeeccCCCcc
Q 039535 441 FNVLKLP-LGMSKLGSLELLDISHSSIEELPE-ELKLLVNLKCLNLRWTDVLN-KIPRQLISNLSRVRVLRMFATGYDRF 517 (769)
Q Consensus 441 ~~~~~l~-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~-~lp~~~~~~l~~L~~L~l~~~~~~~~ 517 (769)
.+..++ ..+..+++|++|++++|.++.++. .+..+++|++|++++|.... .+|.. +..+++|++|++++|.+..+
T Consensus 87 -~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 87 -PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp -CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEE
T ss_pred -ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcC
Confidence 444443 446666777777777776665544 36666777777777765222 24444 66667777777766665421
Q ss_pred ccccccccccCCccchhhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccccc
Q 039535 518 HEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNE 597 (769)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~ 597 (769)
+ . ..+..+++|+.
T Consensus 165 ~---------------~----------------------------------------------------~~~~~l~~L~~ 177 (276)
T 2z62_A 165 Y---------------C----------------------------------------------------TDLRVLHQMPL 177 (276)
T ss_dssp C---------------G----------------------------------------------------GGGHHHHTCTT
T ss_pred C---------------H----------------------------------------------------HHhhhhhhccc
Confidence 0 0 12333344443
Q ss_pred eeeccccCcceEeeeeeccccccCCCccccccceEeecCccccccccc--ccccCCccEEeecCCh
Q 039535 598 LQIHDCRGLEELKIDYTEIAQKRREPFVFRSLRRVTMVSCHKLKDLTF--LVFAPNLKSISLGDCD 661 (769)
Q Consensus 598 L~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~--l~~l~~L~~L~l~~~~ 661 (769)
|.+ .+++++|.+.++++......+|++|++++|. ++.++. +..+++|+.|++++|+
T Consensus 178 l~l-------~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 178 LNL-------SLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CCE-------EEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred cce-------eeecCCCcccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCc
Confidence 222 3455555555555555555678888888884 566553 5667888888888753
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=8.8e-17 Score=165.68 Aligned_cols=124 Identities=19% Similarity=0.310 Sum_probs=59.2
Q ss_pred CcceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEE
Q 039535 380 WENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELL 459 (769)
Q Consensus 380 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L 459 (769)
+++++.|++.++.+..++.+..+++|++|++++|. +..+++ +..+++|++|++++| .+..++ .+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~-i~~~~~--~~~l~~L~~L~L~~n---~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ-ITDLAP--LKNLTKITELELSGN---PLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC-CCCCGG--GTTCCSCCEEECCSC---CCSCCG-GGTTCTTCCEE
T ss_pred cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCc-CCCChh--HccCCCCCEEEccCC---cCCCch-hhcCCCCCCEE
Confidence 34455555555555444444445555555555443 334433 444555555555555 333332 34444555555
Q ss_pred eccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCC
Q 039535 460 DISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGY 514 (769)
Q Consensus 460 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~ 514 (769)
++++|+++.++. +..+++|++|++++|. +..++. +..+++|++|++++|.+
T Consensus 113 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 113 DLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCC
T ss_pred ECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc--ccCCCCccEEEccCCcC
Confidence 555555554432 4445555555555553 333433 44455555555554443
No 74
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=3.6e-18 Score=194.13 Aligned_cols=348 Identities=13% Similarity=0.071 Sum_probs=200.7
Q ss_pred CcceeEEEEeeccccc--cCCCCC-CCC-ceEEEeecccchhccc-CcccccCCcccEEEeeccCccccc--cCCccccC
Q 039535 380 WENVRRLSLMQNQIKV--LSEVPT-CPH-LLTLFLDFNRELMMIA-GGYFQFMPSLKVLKISNIGYFNVL--KLPLGMSK 452 (769)
Q Consensus 380 ~~~l~~l~l~~~~~~~--~~~~~~-~~~-L~~L~l~~~~~~~~i~-~~~~~~l~~L~~L~l~~~~~~~~~--~l~~~~~~ 452 (769)
+++++.|+++++.+.. +..+.. ++. |++|++++|..+.... ......|++|++|++++|.+.+.. .++.....
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence 4567788888776531 222322 334 8888887776332111 122346788888888887321110 02223456
Q ss_pred CCCCCEEeccCCCCC-----ccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCcccccc------
Q 039535 453 LGSLELLDISHSSIE-----ELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEAS------ 521 (769)
Q Consensus 453 l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~------ 521 (769)
+++|++|++++|.++ .++..+..+++|+.|++++|. +..+|.. +..+++|++|+++.+.........
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHH-HhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 677888888887765 334445677888888888876 4456644 777788888877643221000000
Q ss_pred ---ccc-cc-cCCccchhhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCcccccccccccccccc
Q 039535 522 ---EDS-VL-FGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLN 596 (769)
Q Consensus 522 ---~~~-~~-~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~ 596 (769)
... .+ .......+..+..+++|+.|+++.+.+... .+......+++|+.|.+.++. ...........+++|+
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~-~~~~~~~~~~~L~~L~L~~~~--~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE-DHCTLIQKCPNLEVLETRNVI--GDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHH-HHHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHCTTCC
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHH-HHHHHHHhCcCCCEEeccCcc--CHHHHHHHHHhCCCCC
Confidence 000 00 001233455566778888888887764322 222222334678888887332 2222223445677888
Q ss_pred ceeecc-------------------------ccCcceEeeeeeccccccCCC--ccccccceEeecC---cccccccc--
Q 039535 597 ELQIHD-------------------------CRGLEELKIDYTEIAQKRREP--FVFRSLRRVTMVS---CHKLKDLT-- 644 (769)
Q Consensus 597 ~L~l~~-------------------------~~~l~~l~l~~~~~~~~~~~~--~~~~~L~~L~L~~---~~~l~~l~-- 644 (769)
+|++++ |++|+.|++..+.+++..... ..+++|++|+++. |..++..+
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 888872 467777777666665432211 2367888888873 44555531
Q ss_pred -----cccccCCccEEeecCChh-hhhhhccCccCCcccccCCCCCCCccccccccccccccc--ccCCCCCCCCcceEe
Q 039535 645 -----FLVFAPNLKSISLGDCDA-LEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALKS--IYWKPLPFTYLKEMV 716 (769)
Q Consensus 645 -----~l~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--~~~~~~~~~~L~~L~ 716 (769)
.+..+++|+.|++++|.. +++.. + ..+ ...+++|+.|++++| .++. ++.....+++|++|+
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~-------~-~~~--~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~ 494 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLG-------L-SYI--GQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLE 494 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGGGCCHHH-------H-HHH--HHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEE
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCccHHH-------H-HHH--HHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeee
Confidence 144578888888877653 22210 0 000 123678999999987 4543 233334689999999
Q ss_pred ecCCccCCC--cCCCC-CcccccceEEeccc
Q 039535 717 VNGCDQLKK--LPLDS-SCAEERKFVIRGEA 744 (769)
Q Consensus 717 i~~C~~L~~--lp~~~-~~~~l~~~~i~~~~ 744 (769)
+++|+ ++. ++... ..++|+.+.+++|.
T Consensus 495 l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 495 MRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp EESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred ccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 99998 553 23222 23789999999887
No 75
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.69 E-value=4.3e-16 Score=164.33 Aligned_cols=293 Identities=14% Similarity=0.057 Sum_probs=176.1
Q ss_pred CCCCccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCC------CHHHH
Q 039535 17 RPTERTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDP------RLEKI 90 (769)
Q Consensus 17 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~------~~~~~ 90 (769)
+..++.||||+++++++.+++..+ ++++|+|++|+|||+|+++++++. . ++|+++.... ....+
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHH
T ss_pred CCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHH
Confidence 335578999999999999998654 699999999999999999999875 1 6777765432 55666
Q ss_pred HHHHHHHcCCC----------------CCCCCCccHHHHHHHHHHHhcc-ceEEEEEcccccccc---------cccccc
Q 039535 91 QEDIGKRIGLV----------------DDSWKSKSVEEKALDIFRSLRE-KRIVLLLDDIWERLD---------LTKVGV 144 (769)
Q Consensus 91 ~~~l~~~l~~~----------------~~~~~~~~~~~~~~~l~~~l~~-~~~llvlDd~~~~~~---------~~~~~~ 144 (769)
++.+...+... ..........+....+.+.... ++++||+||++.... +..+..
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~ 157 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY 157 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH
Confidence 66666655420 0000123455566666555543 389999999976432 111111
Q ss_pred cCCCCCCCCcEEEEEcCchhhhcc----------c--CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHH
Q 039535 145 PLPGPKNTTSKVVFTTRFFDVCGS----------M--EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVA 212 (769)
Q Consensus 145 ~l~~~~~~~~~iiittr~~~~~~~----------~--~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 212 (769)
... ...+..+|+|++....... + .....+.+.+|+.+|+.+++...+.......+ .+.+..++
T Consensus 158 ~~~--~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i~ 232 (350)
T 2qen_A 158 AYD--SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEAV 232 (350)
T ss_dssp HHH--HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHH
T ss_pred HHH--hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHH
Confidence 111 1136788888876532110 1 11247999999999999999886643321222 35678999
Q ss_pred HHhCCcchHHHHHHHHhcCCCCHHHHHHHHHHHhcccCCCCCCccchhhHHHhhhcCC---CccccchhhceecccCCCc
Q 039535 213 KKCGGLPLALVTIGRAMASKKTAEEWRHAIEELGRSASEFPGLGKEVYPVLKFSYDSL---PNETIRSCFLYCCLYPEDY 289 (769)
Q Consensus 213 ~~~~G~Plai~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~l~~~~~~L---~~~~~~~~~~~~~~~p~~~ 289 (769)
+.+||+|+++..++..+....+...+...+ .. .+...+...+..+ ++ ..+..+..++. .
T Consensus 233 ~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~---~~----------~~~~~~~~~l~~l~~~~~-~~~~~l~~la~-g--- 294 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEYLRNGDFGRAMKRT---LE----------VAKGLIMGELEELRRRSP-RYVDILRAIAL-G--- 294 (350)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHHHHHH---HH----------HHHHHHHHHHHHHHHHCH-HHHHHHHHHHT-T---
T ss_pred HHhCCCHHHHHHHHHHHhccccHhHHHHHH---HH----------HHHHHHHHHHHHHHhCCh-hHHHHHHHHHh-C---
Confidence 999999999999886543212222221111 00 1111111112222 44 56777776666 1
Q ss_pred cccHHHHHHHHhhcCccccCcccccccchhhhHHHHhhhcceeeecCCeEEE-ehhHHHHH
Q 039535 290 GILKWDLIDCWIGEGFLEESNRFGAENRGYYIVGTLVHTCLLEEIEDDKVKM-HDVVRDMA 349 (769)
Q Consensus 290 ~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~-h~lv~~~~ 349 (769)
.++...+....... . . ........++++.|.+.+++... .+.|.+ |++++.+.
T Consensus 295 ~~~~~~l~~~~~~~-~----~-~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 295 YNRWSLIRDYLAVK-G----T-KIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVL 348 (350)
T ss_dssp CCSHHHHHHHHHHT-T----C-CCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHH
T ss_pred CCCHHHHHHHHHHH-h----C-CCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHH
Confidence 13333333322111 0 0 11234456789999999999876 456776 66777664
No 76
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.69 E-value=3.5e-18 Score=187.85 Aligned_cols=288 Identities=18% Similarity=0.130 Sum_probs=141.7
Q ss_pred CceEEEeecccchhcc----cCcccccCCcccEEEeeccCccc--cccCCcc-ccCCCCCCEEeccCCCCCc-----cch
Q 039535 404 HLLTLFLDFNRELMMI----AGGYFQFMPSLKVLKISNIGYFN--VLKLPLG-MSKLGSLELLDISHSSIEE-----LPE 471 (769)
Q Consensus 404 ~L~~L~l~~~~~~~~i----~~~~~~~l~~L~~L~l~~~~~~~--~~~l~~~-~~~l~~L~~L~l~~~~i~~-----lp~ 471 (769)
+|++|++++|. +... .+..+..+++|++|++++|.+.. ...+... .....+|++|++++|+++. ++.
T Consensus 86 ~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 86 KIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred ceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 45566665554 3211 12235555566666666552111 0011111 1123456666666665552 233
Q ss_pred hhhcCCCCceeeccCCCcccccchHHh----cCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEE
Q 039535 472 ELKLLVNLKCLNLRWTDVLNKIPRQLI----SNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLE 547 (769)
Q Consensus 472 ~~~~l~~L~~L~l~~~~~l~~lp~~~~----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~ 547 (769)
.+..+++|++|++++|......+..+. ..+++|++|++++|.+.... ....+..+..+++|+.|+
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~-----------~~~l~~~l~~~~~L~~L~ 233 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN-----------CRDLCGIVASKASLRELA 233 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH-----------HHHHHHHHHHCTTCCEEE
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH-----------HHHHHHHHHhCCCccEEe
Confidence 344556666666666552211111101 12345666666666544210 011344555666677776
Q ss_pred EEeCChhhHH--HHHh-cccccccceeEEEeccCCCccc--cccccccccccccceeeccccCcceEeeeeeccccccCC
Q 039535 548 LTLGSYHALQ--ILLS-SNKLKSCIRSLLLFGFRGTKYF--IDATAFADLKHLNELQIHDCRGLEELKIDYTEIAQKRRE 622 (769)
Q Consensus 548 l~~~~~~~~~--~l~~-~~~~~~~l~~L~l~~~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~l~~l~l~~~~~~~~~~~ 622 (769)
++.+.+.... .+.. ......+++.|.+++|...... .....+..+++|++|++++ |.+.+..+.
T Consensus 234 Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-----------n~i~~~~~~ 302 (461)
T 1z7x_W 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG-----------NELGDEGAR 302 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT-----------CCCHHHHHH
T ss_pred ccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC-----------CCCchHHHH
Confidence 6666544322 1111 1112345666666665333210 0112344455555555554 433321110
Q ss_pred -----C-ccccccceEeecCccccccc------ccccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCcccc
Q 039535 623 -----P-FVFRSLRRVTMVSCHKLKDL------TFLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQN 690 (769)
Q Consensus 623 -----~-~~~~~L~~L~L~~~~~l~~l------~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 690 (769)
. ...++|++|++++|. ++.. ..+..+++|+.|+|++|. +++... ..+.+.+. ...++|++
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~----~~l~~~l~--~~~~~L~~ 374 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGV----RELCQGLG--QPGSVLRV 374 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHH----HHHHHHHT--STTCCCCE
T ss_pred HHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccH----HHHHHHHc--CCCCceEE
Confidence 0 123689999999995 4432 235567999999999984 333211 00001111 12568999
Q ss_pred cccccccccc-----cccCCCCCCCCcceEeecCCccCC
Q 039535 691 LDLSYLLALK-----SIYWKPLPFTYLKEMVVNGCDQLK 724 (769)
Q Consensus 691 L~l~~c~~l~-----~~~~~~~~~~~L~~L~i~~C~~L~ 724 (769)
|++++| .++ .++.....+++|++|++++| .++
T Consensus 375 L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~ 411 (461)
T 1z7x_W 375 LWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-CLG 411 (461)
T ss_dssp EECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS-SCC
T ss_pred EECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC-CCC
Confidence 999997 555 45544456899999999988 344
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=9.8e-17 Score=176.18 Aligned_cols=243 Identities=15% Similarity=0.112 Sum_probs=173.7
Q ss_pred CCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCccchhhhcCCCC
Q 039535 400 PTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEELPEELKLLVNL 479 (769)
Q Consensus 400 ~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L 479 (769)
..+++|++|++++|. +..+++..|..+++|++|++++| .+...++ +..+++|++|++++|.|+.+|. .++|
T Consensus 31 ~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N---~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L 101 (487)
T 3oja_A 31 QSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN---VLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSI 101 (487)
T ss_dssp TTGGGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTS---CCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTC
T ss_pred ccCCCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCC---CCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCc
Confidence 456689999999987 77777777999999999999999 5555444 8889999999999999987763 3899
Q ss_pred ceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCChhhHHHH
Q 039535 480 KCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQIL 559 (769)
Q Consensus 480 ~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l 559 (769)
++|++++|. +..++. ..+++|++|++++|.+.. ..+..++.+++|+.|+++.+.+..
T Consensus 102 ~~L~L~~N~-l~~~~~---~~l~~L~~L~L~~N~l~~---------------~~~~~~~~l~~L~~L~Ls~N~l~~---- 158 (487)
T 3oja_A 102 ETLHAANNN-ISRVSC---SRGQGKKNIYLANNKITM---------------LRDLDEGCRSRVQYLDLKLNEIDT---- 158 (487)
T ss_dssp CEEECCSSC-CCCEEE---CCCSSCEEEECCSSCCCS---------------GGGBCGGGGSSEEEEECTTSCCCE----
T ss_pred CEEECcCCc-CCCCCc---cccCCCCEEECCCCCCCC---------------CCchhhcCCCCCCEEECCCCCCCC----
Confidence 999999997 666664 357899999999998863 244556778888888877554321
Q ss_pred HhcccccccceeEEEeccCCCccccccccc-cccccccceeeccccCcceEeeeeeccccccCCCccccccceEeecCcc
Q 039535 560 LSSNKLKSCIRSLLLFGFRGTKYFIDATAF-ADLKHLNELQIHDCRGLEELKIDYTEIAQKRREPFVFRSLRRVTMVSCH 638 (769)
Q Consensus 560 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~ 638 (769)
..+ ..+ ..+++|++|++++|. ++ +.++ ...+++|+.|+|++|.
T Consensus 159 ----------------------~~~--~~l~~~l~~L~~L~Ls~N~-l~----------~~~~-~~~l~~L~~L~Ls~N~ 202 (487)
T 3oja_A 159 ----------------------VNF--AELAASSDTLEHLNLQYNF-IY----------DVKG-QVVFAKLKTLDLSSNK 202 (487)
T ss_dssp ----------------------EEG--GGGGGGTTTCCEEECTTSC-CC----------EEEC-CCCCTTCCEEECCSSC
T ss_pred ----------------------cCh--HHHhhhCCcccEEecCCCc-cc----------cccc-cccCCCCCEEECCCCC
Confidence 000 122 356777777777653 33 2211 2358899999999995
Q ss_pred ccccc-ccccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCccccccccccccc-ccccCCCCCCCCcceEe
Q 039535 639 KLKDL-TFLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLAL-KSIYWKPLPFTYLKEMV 716 (769)
Q Consensus 639 ~l~~l-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~~~~L~~L~ 716 (769)
++.+ +.+..+++|+.|+|++|.. +++|.. +..+++|+.|++++|+.. ..++.....++.|+.+.
T Consensus 203 -l~~~~~~~~~l~~L~~L~Ls~N~l----------~~lp~~---l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~ 268 (487)
T 3oja_A 203 -LAFMGPEFQSAAGVTWISLRNNKL----------VLIEKA---LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (487)
T ss_dssp -CCEECGGGGGGTTCSEEECTTSCC----------CEECTT---CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHH
T ss_pred -CCCCCHhHcCCCCccEEEecCCcC----------cccchh---hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEe
Confidence 5554 4578889999999998642 333333 456779999999996444 24544455678888887
Q ss_pred ecCCccCC
Q 039535 717 VNGCDQLK 724 (769)
Q Consensus 717 i~~C~~L~ 724 (769)
+..+..++
T Consensus 269 ~~~~~~~~ 276 (487)
T 3oja_A 269 KQTVKKLT 276 (487)
T ss_dssp HHHHHHHT
T ss_pred cccccccc
Confidence 76444333
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=9.4e-18 Score=173.59 Aligned_cols=221 Identities=17% Similarity=0.118 Sum_probs=122.5
Q ss_pred ceEEEeecccchh--cccCcccc-------cCCcccEEEeeccCccccc-cCCccc--cCCCCCCEEeccCCCCCccchh
Q 039535 405 LLTLFLDFNRELM--MIAGGYFQ-------FMPSLKVLKISNIGYFNVL-KLPLGM--SKLGSLELLDISHSSIEELPEE 472 (769)
Q Consensus 405 L~~L~l~~~~~~~--~i~~~~~~-------~l~~L~~L~l~~~~~~~~~-~l~~~~--~~l~~L~~L~l~~~~i~~lp~~ 472 (769)
|+.|++++|. +. .++.. +. ++++|++|++++| .+. .+|..+ ..+++|++|++++|+++.+|..
T Consensus 65 L~~L~L~~n~-l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n---~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 139 (312)
T 1wwl_A 65 IKSLSLKRLT-VRAARIPSR-ILFGALRVLGISGLQELTLENL---EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW 139 (312)
T ss_dssp HHHCCCCEEE-EEEEECBHH-HHHHHHHHHTTSCCCEEEEEEE---BCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSH
T ss_pred Hhhccccccc-ccCCCcCHH-HHHHHHHhcCcCCccEEEccCC---cccchhHHHHHHhcCCCccEEEccCCCCcchhHH
Confidence 6667777665 32 22221 22 4677777777777 443 345544 6677777777777777766666
Q ss_pred hhcC-----CCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhh--hcCCCceE
Q 039535 473 LKLL-----VNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQEL--LGLKYLEV 545 (769)
Q Consensus 473 ~~~l-----~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~l~~L~~ 545 (769)
+..+ ++|++|++++|. +..+++..++++++|++|++++|.+... ...+..+ ..+++|+.
T Consensus 140 ~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------------~~~~~~~~~~~l~~L~~ 205 (312)
T 1wwl_A 140 LAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGE-------------RGLISALCPLKFPTLQV 205 (312)
T ss_dssp HHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHH-------------HHHHHHSCTTSCTTCCE
T ss_pred HHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcc-------------hHHHHHHHhccCCCCCE
Confidence 6555 777777777776 4555533367777777777777765420 1122233 56677777
Q ss_pred EEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccccceeeccccCcceEeeeeeccccccC--CC
Q 039535 546 LELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGLEELKIDYTEIAQKRR--EP 623 (769)
Q Consensus 546 l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~l~~~~~~~~~~--~~ 623 (769)
|+++.+.+..+..+.. ..+..+++|++|+++++ .+.+.++ ..
T Consensus 206 L~L~~N~l~~~~~~~~-------------------------~~~~~l~~L~~L~Ls~N-----------~l~~~~~~~~~ 249 (312)
T 1wwl_A 206 LALRNAGMETPSGVCS-------------------------ALAAARVQLQGLDLSHN-----------SLRDAAGAPSC 249 (312)
T ss_dssp EECTTSCCCCHHHHHH-------------------------HHHHTTCCCSEEECTTS-----------CCCSSCCCSCC
T ss_pred EECCCCcCcchHHHHH-------------------------HHHhcCCCCCEEECCCC-----------cCCcccchhhh
Confidence 7766655443322211 02223344444444443 2222221 11
Q ss_pred ccccccceEeecCcccccccccccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCcccccccccc
Q 039535 624 FVFRSLRRVTMVSCHKLKDLTFLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYL 696 (769)
Q Consensus 624 ~~~~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 696 (769)
..+++|+.|+|++|. ++.++.... ++|++|+|++|.. +++|. +..+++|++|+++++
T Consensus 250 ~~l~~L~~L~Ls~N~-l~~ip~~~~-~~L~~L~Ls~N~l----------~~~p~----~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTG-LKQVPKGLP-AKLSVLDLSYNRL----------DRNPS----PDELPQVGNLSLKGN 306 (312)
T ss_dssp CCCTTCCEEECTTSC-CSSCCSSCC-SEEEEEECCSSCC----------CSCCC----TTTSCEEEEEECTTC
T ss_pred hhcCCCCEEECCCCc-cChhhhhcc-CCceEEECCCCCC----------CCChh----HhhCCCCCEEeccCC
Confidence 235677777777773 455543222 6777777776522 22222 445667777777773
No 79
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.67 E-value=1.9e-17 Score=188.32 Aligned_cols=310 Identities=16% Similarity=0.126 Sum_probs=159.1
Q ss_pred cceeEEEEeec-cccc--cCCC-CCCCCceEEEeecccchhcccC----cccccCCcccEEEeeccC-ccccccCCcccc
Q 039535 381 ENVRRLSLMQN-QIKV--LSEV-PTCPHLLTLFLDFNRELMMIAG----GYFQFMPSLKVLKISNIG-YFNVLKLPLGMS 451 (769)
Q Consensus 381 ~~l~~l~l~~~-~~~~--~~~~-~~~~~L~~L~l~~~~~~~~i~~----~~~~~l~~L~~L~l~~~~-~~~~~~l~~~~~ 451 (769)
++++.|.+.++ .+.. +..+ ..+++|++|++++|. +.+... .+...+++|++|++++|. ......++..+.
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 45666666655 2221 2222 346666666666655 322111 122345566666666652 001111222233
Q ss_pred CCCCCCEEeccCC-CCCccchhhhcCCCCceeeccCCCc------------------------------ccccchHHhcC
Q 039535 452 KLGSLELLDISHS-SIEELPEELKLLVNLKCLNLRWTDV------------------------------LNKIPRQLISN 500 (769)
Q Consensus 452 ~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~------------------------------l~~lp~~~~~~ 500 (769)
.+++|++|++++| .++.+|..+..+++|+.|+++.+.. ...++.. +..
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~-~~~ 287 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV-YSV 287 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGG-HHH
T ss_pred hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHH-HHh
Confidence 4566666666666 3334455555555555555433310 1122321 335
Q ss_pred CCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEecc---
Q 039535 501 LSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGF--- 577 (769)
Q Consensus 501 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~--- 577 (769)
+++|++|++++|.+. +......+..+++|+.|++..+ .. ...+......+++|+.|.+.++
T Consensus 288 ~~~L~~L~L~~~~l~--------------~~~l~~~~~~~~~L~~L~l~~~-~~-~~~l~~l~~~~~~L~~L~L~~~~~~ 351 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQ--------------SYDLVKLLCQCPKLQRLWVLDY-IE-DAGLEVLASTCKDLRELRVFPSEPF 351 (594)
T ss_dssp HTTCCEEECTTCCCC--------------HHHHHHHHTTCTTCCEEEEEGG-GH-HHHHHHHHHHCTTCCEEEEECSCTT
T ss_pred hCCCCEEEccCCCCC--------------HHHHHHHHhcCCCcCEEeCcCc-cC-HHHHHHHHHhCCCCCEEEEecCccc
Confidence 677777777777633 2223334567777888777755 22 2222222222456777777442
Q ss_pred -----CCCccccccccccccccccceeec--------------cccCcceEeeee------eccccc------cCCCccc
Q 039535 578 -----RGTKYFIDATAFADLKHLNELQIH--------------DCRGLEELKIDY------TEIAQK------RREPFVF 626 (769)
Q Consensus 578 -----~~~~~~~~~~~l~~~~~L~~L~l~--------------~~~~l~~l~l~~------~~~~~~------~~~~~~~ 626 (769)
...+..........+++|++|.++ .|++|+.++++. +.++.. ......+
T Consensus 352 g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~ 431 (594)
T 2p1m_B 352 VMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHC 431 (594)
T ss_dssp CSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHC
T ss_pred ccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhC
Confidence 233322222222346667777553 245666666662 222211 1112346
Q ss_pred cccceEeecCcccccc--cccccc-cCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCccccccccccccccccc
Q 039535 627 RSLRRVTMVSCHKLKD--LTFLVF-APNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALKSIY 703 (769)
Q Consensus 627 ~~L~~L~L~~~~~l~~--l~~l~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 703 (769)
++|++|+|++ .+++ +..+.. +++|+.|+|++|..-...+. .. ...+++|++|+|++|.. +...
T Consensus 432 ~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~--------~l---~~~~~~L~~L~L~~n~~-~~~~ 497 (594)
T 2p1m_B 432 KDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH--------HV---LSGCDSLRKLEIRDCPF-GDKA 497 (594)
T ss_dssp TTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH--------HH---HHHCTTCCEEEEESCSC-CHHH
T ss_pred CCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHH--------HH---HhcCCCcCEEECcCCCC-cHHH
Confidence 7788888866 3333 333443 78888888888753221111 00 13467899999999864 4322
Q ss_pred --CCCCCCCCcceEeecCCcc
Q 039535 704 --WKPLPFTYLKEMVVNGCDQ 722 (769)
Q Consensus 704 --~~~~~~~~L~~L~i~~C~~ 722 (769)
.....+++|+.|++++|+.
T Consensus 498 ~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 498 LLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHhCCCCCEEeeeCCCC
Confidence 1334578999999999965
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=2.6e-16 Score=162.16 Aligned_cols=106 Identities=19% Similarity=0.272 Sum_probs=82.3
Q ss_pred CCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCccchhhhcCCC
Q 039535 399 VPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEELPEELKLLVN 478 (769)
Q Consensus 399 ~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~ 478 (769)
...+++|+.|++++|. +..++. +..+++|++|++++| .+..++. +..+++|++|++++|.++.++ .+..+++
T Consensus 37 ~~~l~~L~~L~l~~~~-i~~l~~--~~~l~~L~~L~L~~n---~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTG-VTTIEG--VQYLNNLIGLELKDN---QITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQS 108 (308)
T ss_dssp HHHHHTCCEEECTTSC-CCCCTT--GGGCTTCCEEECCSS---CCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTT
T ss_pred HHHcCCcCEEEeeCCC-ccCchh--hhccCCCCEEEccCC---cCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCC
Confidence 3457788888888776 666653 778888888888888 6666665 778888888888888888775 5778888
Q ss_pred CceeeccCCCcccccchHHhcCCCcCcEEEeeccCCC
Q 039535 479 LKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 479 L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 515 (769)
|++|++++|. +..++. +..+++|++|++++|.+.
T Consensus 109 L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~ 142 (308)
T 1h6u_A 109 IKTLDLTSTQ-ITDVTP--LAGLSNLQVLYLDLNQIT 142 (308)
T ss_dssp CCEEECTTSC-CCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred CCEEECCCCC-CCCchh--hcCCCCCCEEECCCCccC
Confidence 8888888887 666665 778888888888888765
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=3.6e-16 Score=154.97 Aligned_cols=83 Identities=14% Similarity=0.117 Sum_probs=43.0
Q ss_pred ccccc-eEeecCccccccccc-ccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCC-Ccccccccccccccccc
Q 039535 626 FRSLR-RVTMVSCHKLKDLTF-LVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPF-ENLQNLDLSYLLALKSI 702 (769)
Q Consensus 626 ~~~L~-~L~L~~~~~l~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~ 702 (769)
+++|+ .|++++|. ++.++. ....++|+.|++++|..++.+.. ..+..+ ++|+.|++++ +.++.+
T Consensus 154 l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~-----------~~~~~l~~~L~~L~l~~-N~l~~l 220 (239)
T 2xwt_C 154 LCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDK-----------DAFGGVYSGPSLLDVSQ-TSVTAL 220 (239)
T ss_dssp TBSSEEEEECCSCC-CCEECTTTTTTCEEEEEECTTCTTCCEECT-----------TTTTTCSBCCSEEECTT-CCCCCC
T ss_pred hhcceeEEEcCCCC-CcccCHhhcCCCCCCEEEcCCCCCcccCCH-----------HHhhccccCCcEEECCC-CccccC
Confidence 44555 55555552 333332 11225666666666543333211 123344 6777777777 466666
Q ss_pred cCCCCCCCCcceEeecCCccC
Q 039535 703 YWKPLPFTYLKEMVVNGCDQL 723 (769)
Q Consensus 703 ~~~~~~~~~L~~L~i~~C~~L 723 (769)
+.. .+++|+.|.+++|++|
T Consensus 221 ~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 221 PSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp CCT--TCTTCSEEECTTC---
T ss_pred Chh--HhccCceeeccCccCC
Confidence 644 5677777777777654
No 82
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.65 E-value=3.7e-15 Score=157.64 Aligned_cols=290 Identities=13% Similarity=0.090 Sum_probs=167.4
Q ss_pred CCccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC-----CCHHHHHHH
Q 039535 19 TERTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD-----PRLEKIQED 93 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~-----~~~~~~~~~ 93 (769)
.+..||||+++++.+.+ +.. ++++|+|++|+|||+|+++++++. .. .++|+++... .+...++..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL---NL---PYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH---TC---CEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc---CC---CEEEEEchhhccccCCCHHHHHHH
Confidence 45779999999999999 754 699999999999999999999887 22 2578887642 344444444
Q ss_pred HHHHcC--------------C----CCCC---------CCCccHHHHHHHHHHHhccceEEEEEccccccc-----cccc
Q 039535 94 IGKRIG--------------L----VDDS---------WKSKSVEEKALDIFRSLREKRIVLLLDDIWERL-----DLTK 141 (769)
Q Consensus 94 l~~~l~--------------~----~~~~---------~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~-----~~~~ 141 (769)
+.+.+. . ..+. ............+.+... ++++||+||++... ++..
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHH
Confidence 443321 0 0000 012234444444443322 49999999996532 2211
Q ss_pred ccccCCCCCCCCcEEEEEcCchhhhc----------cc-CC-CceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHH
Q 039535 142 VGVPLPGPKNTTSKVVFTTRFFDVCG----------SM-EA-HRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQ 209 (769)
Q Consensus 142 ~~~~l~~~~~~~~~iiittr~~~~~~----------~~-~~-~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 209 (769)
+...+. ....+..+|+|++...... .. +. ...+.+.+|+.+|+.+++...+......... ..
T Consensus 160 ~l~~~~-~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~-----~~ 233 (357)
T 2fna_A 160 ALAYAY-DNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD-----YE 233 (357)
T ss_dssp HHHHHH-HHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC-----HH
T ss_pred HHHHHH-HcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc-----HH
Confidence 211111 1113678899988754211 11 11 3579999999999999998865422211221 16
Q ss_pred HHHHHhCCcchHHHHHHHHhcCCCCHHHHHHH-HHHHhcccCCCCCCccchhhHHHhhh---cCCCccccchhhceeccc
Q 039535 210 TVAKKCGGLPLALVTIGRAMASKKTAEEWRHA-IEELGRSASEFPGLGKEVYPVLKFSY---DSLPNETIRSCFLYCCLY 285 (769)
Q Consensus 210 ~i~~~~~G~Plai~~~~~~l~~~~~~~~~~~~-l~~l~~~~~~~~~~~~~i~~~l~~~~---~~L~~~~~~~~~~~~~~~ 285 (769)
.+++.++|+|+++..++..+....+...+... .+.... .+...+.-.+ ..+++ ..+..+..++.
T Consensus 234 ~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~l~~-~~~~~l~~la~- 301 (357)
T 2fna_A 234 VVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK----------LILKEFENFLHGREIARK-RYLNIMRTLSK- 301 (357)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----------HHHHHHHHHHTTCGGGHH-HHHHHHHHHTT-
T ss_pred HHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH----------HHHHHHHHHhhccccccH-HHHHHHHHHHc-
Confidence 89999999999999998765432233333221 111000 0111111111 14555 56777776666
Q ss_pred CCCccccHHHHHHHHh-hcCccccCcccccccchhhhHHHHhhhcceeeecCCeEEE-ehhHHHH
Q 039535 286 PEDYGILKWDLIDCWI-GEGFLEESNRFGAENRGYYIVGTLVHTCLLEEIEDDKVKM-HDVVRDM 348 (769)
Q Consensus 286 p~~~~i~~~~l~~~w~-~~g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~-h~lv~~~ 348 (769)
+. +...+..... ..|. ........++++.|.+.+++...+ +.|.+ |++++++
T Consensus 302 --g~--~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~ 355 (357)
T 2fna_A 302 --CG--KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLA 355 (357)
T ss_dssp --CB--CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHH
T ss_pred --CC--CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHh
Confidence 21 3333322110 0110 012344567899999999998754 56775 6777765
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=1.2e-16 Score=167.43 Aligned_cols=123 Identities=15% Similarity=0.059 Sum_probs=69.0
Q ss_pred eeEEEEeeccccccCCCCCC--CCceEEEeecccchhcccCcccccCCcccEEEeeccCcccccc--CCccccCCCCCCE
Q 039535 383 VRRLSLMQNQIKVLSEVPTC--PHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLK--LPLGMSKLGSLEL 458 (769)
Q Consensus 383 l~~l~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~--l~~~~~~l~~L~~ 458 (769)
++.++++++.+. ...+..+ ++++.|++++|. +...++. +..+++|++|++++| .+.. ++..+..+++|++
T Consensus 49 ~~~l~l~~~~~~-~~~~~~~~~~~l~~L~l~~n~-l~~~~~~-~~~~~~L~~L~L~~~---~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 49 WQTLDLTGKNLH-PDVTGRLLSQGVIAFRCPRSF-MDQPLAE-HFSPFRVQHMDLSNS---VIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp SSEEECTTCBCC-HHHHHHHHHTTCSEEECTTCE-ECSCCCS-CCCCBCCCEEECTTC---EECHHHHHHHHTTBCCCSE
T ss_pred heeeccccccCC-HHHHHhhhhccceEEEcCCcc-ccccchh-hccCCCCCEEEccCC---CcCHHHHHHHHhhCCCCCE
Confidence 455666655443 1112333 566666666665 4444333 335666666666666 3321 4455566666666
Q ss_pred EeccCCCCC-ccchhhhcCCCCceeeccCCCcccc--cchHHhcCCCcCcEEEeecc
Q 039535 459 LDISHSSIE-ELPEELKLLVNLKCLNLRWTDVLNK--IPRQLISNLSRVRVLRMFAT 512 (769)
Q Consensus 459 L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~--lp~~~~~~l~~L~~L~l~~~ 512 (769)
|++++|.++ ..+..+..+++|++|++++|..++. ++.. +.++++|++|++++|
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWC 178 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCC
Confidence 666666665 4555566666666666666633432 3332 556666666666666
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.63 E-value=1.4e-15 Score=153.60 Aligned_cols=171 Identities=22% Similarity=0.399 Sum_probs=133.1
Q ss_pred ceEEEEcCCccccCCCCCCCcceeEEEEeeccccccC--CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeecc
Q 039535 361 INFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLS--EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNI 438 (769)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~ 438 (769)
...+.+.+..+..+|... .++++.|++++|.+..++ .+..+++|++|++++|. +..++...|.++++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCC
Confidence 345677777777777532 367899999999886665 47889999999999887 77888887888999999999998
Q ss_pred CccccccCCc-cccCCCCCCEEeccCCCCCccchh-hhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCc
Q 039535 439 GYFNVLKLPL-GMSKLGSLELLDISHSSIEELPEE-LKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDR 516 (769)
Q Consensus 439 ~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~ 516 (769)
.+..+|. .+..+++|++|++++|.++.++.. +..+++|++|++++|. +..+|...+..+++|++|++++|.+..
T Consensus 96 ---~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 96 ---KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp ---CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred ---cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcE
Confidence 6666664 457888999999999998877644 6788999999999987 677777667889999999999888764
Q ss_pred cccccccccccCCccchhhhhhcCCCceEEEEEeCC
Q 039535 517 FHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGS 552 (769)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~ 552 (769)
+ ....+..+++|+.|+++.+.
T Consensus 172 ~---------------~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 172 V---------------PEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp C---------------CTTTTTTCTTCCEEECCSSC
T ss_pred e---------------ChhHhccCCCcCEEECCCCc
Confidence 3 23346677888888776543
No 85
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.63 E-value=3e-15 Score=161.72 Aligned_cols=299 Identities=12% Similarity=0.054 Sum_probs=178.5
Q ss_pred CCccccchHHHHHHHHHHh-hc---C---CceEEEE--EcCCCCcHHHHHHHHHhhhhhcc--CC-CCEEEEEEecCCCC
Q 039535 19 TERTLVGLQSQLEQVWRCL-IE---E---SAGIIGL--YGMGGVGKTTLLIHINNKFLESR--TN-FDFVIWVVVSKDPR 86 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l-~~---~---~~~~v~I--~G~~GiGKTtLa~~~~~~~~~~~--~~-~~~~~w~~~~~~~~ 86 (769)
.+..|+||+++++++.+++ .. + ..+.++| +|++|+|||+||++++++..... .. ...++|+++....+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 4478999999999999988 42 2 4567888 99999999999999998873211 11 23578888877778
Q ss_pred HHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc--cceEEEEEccccccc--------ccccccccCCC--CCC--C
Q 039535 87 LEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLR--EKRIVLLLDDIWERL--------DLTKVGVPLPG--PKN--T 152 (769)
Q Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~~--------~~~~~~~~l~~--~~~--~ 152 (769)
...+++.++.+++...+. ......+....+.+.+. +++++||+||++... .+..+...+.. ..+ .
T Consensus 100 ~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 178 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVN 178 (412)
T ss_dssp HHHHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCC
T ss_pred HHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCc
Confidence 899999999998764332 23345556666666663 679999999997532 12212111110 112 4
Q ss_pred CcEEEEEcCchhhhccc---------CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhC------C
Q 039535 153 TSKVVFTTRFFDVCGSM---------EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCG------G 217 (769)
Q Consensus 153 ~~~iiittr~~~~~~~~---------~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~------G 217 (769)
...+|+||+.......+ .....+.+.+++.+++.+++...+..... ......+.+..+++.++ |
T Consensus 179 ~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 179 RIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLR-DTVWEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp BEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBC-TTSCCHHHHHHHHHHHCGGGTSCC
T ss_pred eEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCC-CCCCChHHHHHHHHHHHHhccCCC
Confidence 55677788755422110 11223999999999999999876532110 01112456778999999 9
Q ss_pred cchHHHHHHHHhc------CC--CCHHHHHHHHHHHhcccCCCCCCccchhhHHHhhhcCCCccccchhhceecccC--C
Q 039535 218 LPLALVTIGRAMA------SK--KTAEEWRHAIEELGRSASEFPGLGKEVYPVLKFSYDSLPNETIRSCFLYCCLYP--E 287 (769)
Q Consensus 218 ~Plai~~~~~~l~------~~--~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~l~~~~~~L~~~~~~~~~~~~~~~p--~ 287 (769)
.|..+..++.... +. -+.+.+...+..... ...+...+..|+. ..+.++..++.+. .
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~~-~~~~~l~aia~l~~~~ 324 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALSI-HELIILRLIAEATLGG 324 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCH-HHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCCH-HHHHHHHHHHHHHhcC
Confidence 9987666553321 11 133444433332110 1123335567777 6777777777543 2
Q ss_pred CccccHHHHHHHHhhc--CccccCcccccccchhhhHHHHhhhcceeee
Q 039535 288 DYGILKWDLIDCWIGE--GFLEESNRFGAENRGYYIVGTLVHTCLLEEI 334 (769)
Q Consensus 288 ~~~i~~~~l~~~w~~~--g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 334 (769)
...+....+...|... ..... ..........+++.|.+.+++...
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 325 MEWINAGLLRQRYEDASLTMYNV--KPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp CSSBCHHHHHHHHHHHHHHHSCC--CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCccHHHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHhCCCEEee
Confidence 2234444433333110 00000 011234456789999999999765
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=6.7e-17 Score=167.16 Aligned_cols=249 Identities=17% Similarity=0.179 Sum_probs=176.1
Q ss_pred CCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCcccc-------CCCCCCEEeccCCCCC-ccch
Q 039535 400 PTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMS-------KLGSLELLDISHSSIE-ELPE 471 (769)
Q Consensus 400 ~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~-------~l~~L~~L~l~~~~i~-~lp~ 471 (769)
...++|+.|++++|. + .+|...... |++|++++|.+.. ..+|..+. .+++|++|++++|+++ .+|.
T Consensus 40 ~~~~~L~~l~l~~n~-l-~~p~~~~~~---L~~L~L~~n~l~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDT-E-ADLGQFTDI---IKSLSLKRLTVRA-ARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEECTTHHHHCCT-T-CCCHHHHHH---HHHCCCCEEEEEE-EECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred ccCCCceeEeecccc-c-ccHHHHHHH---HhhcccccccccC-CCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 445678888898887 4 666553332 8999999983211 23555554 6899999999999998 6787
Q ss_pred hh--hcCCCCceeeccCCCcccccchHHhcCC-----CcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCce
Q 039535 472 EL--KLLVNLKCLNLRWTDVLNKIPRQLISNL-----SRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLE 544 (769)
Q Consensus 472 ~~--~~l~~L~~L~l~~~~~l~~lp~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 544 (769)
.+ ..+++|++|++++|. +..+|.. ++.+ ++|++|++++|.+.. ..+..++.+++|+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~---------------~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVS-WATRDAW-LAELQQWLKPGLKVLSIAQAHSLN---------------FSCEQVRVFPALS 176 (312)
T ss_dssp CSSSCCSCCCSEEEEESCB-CSSSSSH-HHHHHTTCCTTCCEEEEESCSCCC---------------CCTTTCCCCSSCC
T ss_pred HHHHhcCCCccEEEccCCC-CcchhHH-HHHHHHhhcCCCcEEEeeCCCCcc---------------chHHHhccCCCCC
Confidence 76 889999999999998 5555654 6666 899999999999864 3456778899999
Q ss_pred EEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccccceeeccccCcceEeeeeeccccccCCC-
Q 039535 545 VLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGLEELKIDYTEIAQKRREP- 623 (769)
Q Consensus 545 ~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~l~~~~~~~~~~~~- 623 (769)
.|+++.+.......+... ..+..+++|++|+++++. ++.+. ......
T Consensus 177 ~L~Ls~N~l~~~~~~~~~------------------------~~~~~l~~L~~L~L~~N~-l~~~~-------~~~~~~~ 224 (312)
T 1wwl_A 177 TLDLSDNPELGERGLISA------------------------LCPLKFPTLQVLALRNAG-METPS-------GVCSALA 224 (312)
T ss_dssp EEECCSCTTCHHHHHHHH------------------------SCTTSCTTCCEEECTTSC-CCCHH-------HHHHHHH
T ss_pred EEECCCCCcCcchHHHHH------------------------HHhccCCCCCEEECCCCc-CcchH-------HHHHHHH
Confidence 999987764332111100 023566777777777652 22110 111111
Q ss_pred ccccccceEeecCccccccc---ccccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCcccccccccccccc
Q 039535 624 FVFRSLRRVTMVSCHKLKDL---TFLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALK 700 (769)
Q Consensus 624 ~~~~~L~~L~L~~~~~l~~l---~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 700 (769)
..+++|++|++++|. ++.. +.+..+++|++|+|++|.. +.+|..+. ++|++|+++++ .++
T Consensus 225 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~l----------~~ip~~~~-----~~L~~L~Ls~N-~l~ 287 (312)
T 1wwl_A 225 AARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTGL----------KQVPKGLP-----AKLSVLDLSYN-RLD 287 (312)
T ss_dssp HTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSCC----------SSCCSSCC-----SEEEEEECCSS-CCC
T ss_pred hcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCcc----------Chhhhhcc-----CCceEEECCCC-CCC
Confidence 246899999999995 5553 3455689999999999742 33444332 79999999995 888
Q ss_pred cccCCCCCCCCcceEeecCCc
Q 039535 701 SIYWKPLPFTYLKEMVVNGCD 721 (769)
Q Consensus 701 ~~~~~~~~~~~L~~L~i~~C~ 721 (769)
.+|. ...+++|++|++++++
T Consensus 288 ~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 288 RNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SCCC-TTTSCEEEEEECTTCT
T ss_pred CChh-HhhCCCCCEEeccCCC
Confidence 8876 6789999999998873
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=2.9e-16 Score=158.83 Aligned_cols=201 Identities=19% Similarity=0.223 Sum_probs=142.0
Q ss_pred CCCCcceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCc-cccCCCC
Q 039535 377 VKGWENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPL-GMSKLGS 455 (769)
Q Consensus 377 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~-~~~~l~~ 455 (769)
...+++++.|.+.++.+..++.+..+++|++|++++|. +..++ .+..+++|++|++++| .+..++. .+..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~-l~~~~--~l~~l~~L~~L~L~~n---~l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNK-LHDIS--ALKELTNLTYLILTGN---QLQSLPNGVFDKLTN 110 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSC-CCCCG--GGTTCTTCCEEECTTS---CCCCCCTTTTTTCTT
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCCC-CCCch--hhcCCCCCCEEECCCC---ccCccChhHhcCCcC
Confidence 34456788888888888777778888889999998887 55554 3788888999999888 5666654 3578888
Q ss_pred CCEEeccCCCCCccchh-hhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchh
Q 039535 456 LELLDISHSSIEELPEE-LKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLI 534 (769)
Q Consensus 456 L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (769)
|++|++++|+++.++.. +..+++|++|++++|. +..+++..+..+++|++|++++|.+..+ .+
T Consensus 111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------~~ 174 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSL---------------PE 174 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCC---------------CT
T ss_pred CCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCcc---------------CH
Confidence 99999998888876654 6788889999998886 6677766577888899999988877632 33
Q ss_pred hhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccccceeeccccCcceEeeeee
Q 039535 535 QELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGLEELKIDYT 614 (769)
Q Consensus 535 ~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~l~~~ 614 (769)
..+..+++|+.|+++.+.+.. ... ..+..+++|+.|++++++-.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~--------------------------~~~--~~~~~l~~L~~L~l~~N~~~-------- 218 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKS--------------------------VPD--GVFDRLTSLQYIWLHDNPWD-------- 218 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSC--------------------------CCT--TTTTTCTTCCEEECCSSCBC--------
T ss_pred HHhcCCccCCEEECCCCcCCc--------------------------cCH--HHHhCCcCCCEEEccCCCcc--------
Confidence 445677788888776554321 000 24566677777777665321
Q ss_pred ccccccCCCccccccceEeecCcccccccc
Q 039535 615 EIAQKRREPFVFRSLRRVTMVSCHKLKDLT 644 (769)
Q Consensus 615 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~ 644 (769)
..+++|+.|++..|.....+|
T Consensus 219 ---------~~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 219 ---------CTCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp ---------CCTTTTHHHHHHHHHTGGGBB
T ss_pred ---------ccCcHHHHHHHHHHhCCCccc
Confidence 235667777777665444444
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=3.6e-15 Score=156.81 Aligned_cols=241 Identities=20% Similarity=0.227 Sum_probs=175.3
Q ss_pred eEEEEcCCccccCCCCCCCcceeEEEEeeccccccC--CCCCCCCceEEEeecccchhcccCcccccCCcccEEE-eecc
Q 039535 362 NFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLS--EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLK-ISNI 438 (769)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~-l~~~ 438 (769)
..+.|.+.++.++|... .++++.|.|++|.+..++ .|.++++|++|+|++|...+.++..+|.++++|+.+. +.+|
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 34678888889988632 468999999999998775 4789999999999999866778888899999987654 5556
Q ss_pred CccccccCC-ccccCCCCCCEEeccCCCCCccchh-hhcCCCCceeeccCCCcccccchHHhcCCC-cCcEEEeeccCCC
Q 039535 439 GYFNVLKLP-LGMSKLGSLELLDISHSSIEELPEE-LKLLVNLKCLNLRWTDVLNKIPRQLISNLS-RVRVLRMFATGYD 515 (769)
Q Consensus 439 ~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~-~L~~L~l~~~~~~ 515 (769)
.+..++ ..+..+++|++|++++|+++.+|.. .....++..+++.++..+..++...+..+. .++.|++++|.+.
T Consensus 91 ---~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 91 ---NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ---TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred ---cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 677774 5678999999999999999977653 456677889999887778888775566654 6899999999876
Q ss_pred ccccccccccccCCccchhhhhhcCCCceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCccccccccccccccc
Q 039535 516 RFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHL 595 (769)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L 595 (769)
.++ .......+|+.+.+. ++...+..+ ...+..+++|
T Consensus 168 ~i~----------------~~~f~~~~L~~l~l~--------------------------~~n~l~~i~-~~~f~~l~~L 204 (350)
T 4ay9_X 168 EIH----------------NSAFNGTQLDELNLS--------------------------DNNNLEELP-NDVFHGASGP 204 (350)
T ss_dssp EEC----------------TTSSTTEEEEEEECT--------------------------TCTTCCCCC-TTTTTTEECC
T ss_pred CCC----------------hhhccccchhHHhhc--------------------------cCCcccCCC-HHHhccCccc
Confidence 432 222233344444433 222222111 0245667777
Q ss_pred cceeeccccCcceEeeeeeccccccCCCccccccceEeecCcccccccccccccCCccEEeecCChh
Q 039535 596 NELQIHDCRGLEELKIDYTEIAQKRREPFVFRSLRRVTMVSCHKLKDLTFLVFAPNLKSISLGDCDA 662 (769)
Q Consensus 596 ~~L~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~~~~ 662 (769)
++|+++++ .++.+++ ..+.+|++|.+.+|..++.+|.+..+++|+.+++.+...
T Consensus 205 ~~LdLs~N-----------~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 205 VILDISRT-----------RIHSLPS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPSH 258 (350)
T ss_dssp SEEECTTS-----------CCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCHHH
T ss_pred chhhcCCC-----------CcCccCh--hhhccchHhhhccCCCcCcCCCchhCcChhhCcCCCCcc
Confidence 77766654 3333333 247899999999999999999999999999999986543
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=2.3e-15 Score=158.25 Aligned_cols=239 Identities=15% Similarity=0.145 Sum_probs=144.8
Q ss_pred eEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCc-cccCCCCCCEEeccCCCCC-ccchh-hhcCCCCcee
Q 039535 406 LTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPL-GMSKLGSLELLDISHSSIE-ELPEE-LKLLVNLKCL 482 (769)
Q Consensus 406 ~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~-~lp~~-~~~l~~L~~L 482 (769)
++++.+++. +..+|..+ .+++++|+|++| .+..+|. .+.++++|++|+|++|++. .+|.. +..+++|.++
T Consensus 12 ~~v~C~~~~-Lt~iP~~l---~~~l~~L~Ls~N---~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~ 84 (350)
T 4ay9_X 12 RVFLCQESK-VTEIPSDL---PRNAIELRFVLT---KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI 84 (350)
T ss_dssp TEEEEESTT-CCSCCTTC---CTTCSEEEEESC---CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred CEEEecCCC-CCccCcCc---CCCCCEEEccCC---cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence 566777655 77777653 357888888888 6777775 4678888888888888875 45543 5677777665
Q ss_pred eccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCChhhHHHHHhc
Q 039535 483 NLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSS 562 (769)
Q Consensus 483 ~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~l~~~ 562 (769)
...++..+..+++..+..+++|++|++++|.+..++ ........++..+++.
T Consensus 85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~---------------~~~~~~~~~l~~l~l~------------- 136 (350)
T 4ay9_X 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP---------------DVHKIHSLQKVLLDIQ------------- 136 (350)
T ss_dssp EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCC---------------CCTTCCBSSCEEEEEE-------------
T ss_pred hcccCCcccccCchhhhhccccccccccccccccCC---------------chhhcccchhhhhhhc-------------
Confidence 444444477776666788888888888888776432 1111222333344333
Q ss_pred ccccccceeEEEeccCCCccccccccccccccccceeeccccCcceEeeeeeccccccCCCccccccceEeecCcccccc
Q 039535 563 NKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGLEELKIDYTEIAQKRREPFVFRSLRRVTMVSCHKLKD 642 (769)
Q Consensus 563 ~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 642 (769)
++........ ..+..+. ..++.+++++|.+..+++......+|++|++.++..++.
T Consensus 137 -------------~~~~i~~l~~-~~f~~~~----------~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~ 192 (350)
T 4ay9_X 137 -------------DNINIHTIER-NSFVGLS----------FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEE 192 (350)
T ss_dssp -------------SCTTCCEECT-TSSTTSB----------SSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCC
T ss_pred -------------cccccccccc-cchhhcc----------hhhhhhccccccccCCChhhccccchhHHhhccCCcccC
Confidence 2111111110 0111111 124445555666666555555667788888877667777
Q ss_pred ccc--ccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCcccccccccccccccccCCCCCCCCcceEeecC
Q 039535 643 LTF--LVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALKSIYWKPLPFTYLKEMVVNG 719 (769)
Q Consensus 643 l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~ 719 (769)
++. +..+++|+.|+|++|. + +.+|. ..|.+|+.|.+.+|.+++.+|. ...+++|+.+++.+
T Consensus 193 i~~~~f~~l~~L~~LdLs~N~-l---------~~lp~-----~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 193 LPNDVFHGASGPVILDISRTR-I---------HSLPS-----YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CCTTTTTTEECCSEEECTTSC-C---------CCCCS-----SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred CCHHHhccCcccchhhcCCCC-c---------CccCh-----hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 764 5677888888887752 2 22322 1344666666666677777773 34577777777743
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.60 E-value=2.8e-15 Score=152.79 Aligned_cols=131 Identities=18% Similarity=0.215 Sum_probs=97.9
Q ss_pred CCcceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCE
Q 039535 379 GWENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLEL 458 (769)
Q Consensus 379 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~ 458 (769)
.+++++.+++.++.+..++.- -.++++.|++++|. +..+++..|..+++|++|++++| .+..++.. ..+++|++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~-~~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n---~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPD-LPKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRA---ELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSC-CCTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTS---CCCEEECC-SCCTTCCE
T ss_pred ccCCccEEECCCCCCCcCCCC-CCCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCC---ccCcccCC-CCCCcCCE
Confidence 345677788887777655431 13678888888877 66666666888888888888888 55555443 67788888
Q ss_pred EeccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCc
Q 039535 459 LDISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDR 516 (769)
Q Consensus 459 L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~ 516 (769)
|++++|.++.+|..+..+++|++|++++|. +..+|+..+..+++|++|++++|.+..
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKT 138 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCc
Confidence 888888888888777888888888888886 666765557788888888888887663
No 91
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.60 E-value=3.2e-15 Score=150.99 Aligned_cols=127 Identities=20% Similarity=0.334 Sum_probs=89.0
Q ss_pred eeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCcc-ccCCCCCCEEec
Q 039535 383 VRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLG-MSKLGSLELLDI 461 (769)
Q Consensus 383 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~-~~~l~~L~~L~l 461 (769)
.+.++++++.+..++.. -.++|+.|++++|. +..++...|.++++|++|++++| .+..+|.. +..+++|++|++
T Consensus 18 ~~~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n---~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSN-IPADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDN---KLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSS---CCSCCCTTTTSSCTTCCEEEC
T ss_pred CCEEEccCCCCCccCCC-CCCCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCC---ccCeeChhhhcCCCCCCEEEC
Confidence 45677777776555431 12567888888776 66677666778888888888887 55566544 367788888888
Q ss_pred cCCCCCccchh-hhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCC
Q 039535 462 SHSSIEELPEE-LKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 462 ~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 515 (769)
++|.++.+|.. +..+++|++|++++|. +..+++..+..+++|++|++++|.+.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCC
Confidence 88887766643 5677888888888776 55666555677788888888777665
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.60 E-value=2.4e-16 Score=165.18 Aligned_cols=252 Identities=16% Similarity=0.142 Sum_probs=168.2
Q ss_pred CceEEEeecccchhcccCcccccC--CcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCC-c-cchhhhcCCCC
Q 039535 404 HLLTLFLDFNRELMMIAGGYFQFM--PSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIE-E-LPEELKLLVNL 479 (769)
Q Consensus 404 ~L~~L~l~~~~~~~~i~~~~~~~l--~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~-lp~~~~~l~~L 479 (769)
.++.++++++. +. +..+..+ ++++.|++++| .+...+..+..+++|++|++++|.++ . ++..+..+++|
T Consensus 48 ~~~~l~l~~~~-~~---~~~~~~~~~~~l~~L~l~~n---~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 48 LWQTLDLTGKN-LH---PDVTGRLLSQGVIAFRCPRS---FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp TSSEEECTTCB-CC---HHHHHHHHHTTCSEEECTTC---EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred hheeecccccc-CC---HHHHHhhhhccceEEEcCCc---cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 47889998776 32 2346666 89999999999 66666666778999999999999988 3 78888999999
Q ss_pred ceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeC-ChhhHHH
Q 039535 480 KCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLG-SYHALQI 558 (769)
Q Consensus 480 ~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~-~~~~~~~ 558 (769)
++|++++|......+.. +..+++|++|++++|...+ +...+..+..+++|+.|+++.+ .++....
T Consensus 121 ~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~-------------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 186 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFS-------------EFALQTLLSSCSRLDELNLSWCFDFTEKHV 186 (336)
T ss_dssp SEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCC-------------HHHHHHHHHHCTTCCEEECCCCTTCCHHHH
T ss_pred CEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCC-------------HHHHHHHHhcCCCCCEEcCCCCCCcChHHH
Confidence 99999999744455655 7889999999999994331 2235566788888888888876 5443110
Q ss_pred HHhcccccccceeEEEeccCCCccccccccccccc-cccceeecccc-CcceEeeeeeccccccCCCccccccceEeecC
Q 039535 559 LLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLK-HLNELQIHDCR-GLEELKIDYTEIAQKRREPFVFRSLRRVTMVS 636 (769)
Q Consensus 559 l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~-~l~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~ 636 (769)
...+..++ +|++|++++|. .++. . +++.....+++|++|++++
T Consensus 187 ---------------------------~~~~~~l~~~L~~L~l~~~~~~~~~-----~---~l~~~~~~~~~L~~L~l~~ 231 (336)
T 2ast_B 187 ---------------------------QVAVAHVSETITQLNLSGYRKNLQK-----S---DLSTLVRRCPNLVHLDLSD 231 (336)
T ss_dssp ---------------------------HHHHHHSCTTCCEEECCSCGGGSCH-----H---HHHHHHHHCTTCSEEECTT
T ss_pred ---------------------------HHHHHhcccCCCEEEeCCCcccCCH-----H---HHHHHHhhCCCCCEEeCCC
Confidence 01345566 77777777764 2221 0 1111113577888888888
Q ss_pred cccccc--cccccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCcccccccccccccccccCCCCCC-CCcc
Q 039535 637 CHKLKD--LTFLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALKSIYWKPLPF-TYLK 713 (769)
Q Consensus 637 ~~~l~~--l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~-~~L~ 713 (769)
|..+++ ++.+..+++|+.|++++|..+.+ ..+..+..+++|++|++++| +..-. ...+ .+|.
T Consensus 232 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-----------~~~~~l~~~~~L~~L~l~~~--i~~~~--~~~l~~~l~ 296 (336)
T 2ast_B 232 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP-----------ETLLELGEIPTLKTLQVFGI--VPDGT--LQLLKEALP 296 (336)
T ss_dssp CTTCCGGGGGGGGGCTTCCEEECTTCTTCCG-----------GGGGGGGGCTTCCEEECTTS--SCTTC--HHHHHHHST
T ss_pred CCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH-----------HHHHHHhcCCCCCEEeccCc--cCHHH--HHHHHhhCc
Confidence 865443 45677788888888888864332 11123456778888888887 22211 1112 3466
Q ss_pred eEeecCCccCCCcC
Q 039535 714 EMVVNGCDQLKKLP 727 (769)
Q Consensus 714 ~L~i~~C~~L~~lp 727 (769)
.|++. |++++...
T Consensus 297 ~L~l~-~n~l~~~~ 309 (336)
T 2ast_B 297 HLQIN-CSHFTTIA 309 (336)
T ss_dssp TSEES-CCCSCCTT
T ss_pred ceEEe-cccCcccc
Confidence 66674 55666543
No 93
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.57 E-value=1.1e-14 Score=147.24 Aligned_cols=171 Identities=25% Similarity=0.398 Sum_probs=145.9
Q ss_pred ceEEEEcCCccccCCCCCCCcceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCc
Q 039535 361 INFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGY 440 (769)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~ 440 (769)
...+...+..+..++.+..+++++.|++++|.+..++.+..+++|++|++++|. +..+++..|..+++|++|++++|
T Consensus 43 L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-- 119 (272)
T 3rfs_A 43 IDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVEN-- 119 (272)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS--
T ss_pred eeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCC--
Confidence 445666677778888888899999999999999888888999999999999987 77888888899999999999999
Q ss_pred cccccCCcc-ccCCCCCCEEeccCCCCCccchh-hhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccc
Q 039535 441 FNVLKLPLG-MSKLGSLELLDISHSSIEELPEE-LKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFH 518 (769)
Q Consensus 441 ~~~~~l~~~-~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~ 518 (769)
.+..++.. +..+++|++|++++|.++.+|.. +..+++|++|++++|. +..+++..++.+++|++|++++|.+..+
T Consensus 120 -~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~- 196 (272)
T 3rfs_A 120 -QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSV- 196 (272)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC-
T ss_pred -cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCcc-
Confidence 66666654 68899999999999999987765 6889999999999997 6677776678999999999999988742
Q ss_pred cccccccccCCccchhhhhhcCCCceEEEEEeC
Q 039535 519 EASEDSVLFGGGEVLIQELLGLKYLEVLELTLG 551 (769)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~ 551 (769)
.+..+..+++|+.|++..+
T Consensus 197 --------------~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 197 --------------PDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp --------------CTTTTTTCTTCCEEECCSS
T ss_pred --------------CHHHHhCCcCCCEEEccCC
Confidence 3455788899999988755
No 94
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=1.7e-14 Score=146.96 Aligned_cols=170 Identities=24% Similarity=0.287 Sum_probs=141.9
Q ss_pred ceEEEEcCCccccCCCCCCCcceeEEEEeecccccc--CCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeecc
Q 039535 361 INFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVL--SEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNI 438 (769)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~ 438 (769)
...+.+.+.++..+|... .++++.|++++|.+..+ ..+..+++|+.|++++|. +..++. ...+++|++|++++|
T Consensus 12 l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~Ls~N 87 (290)
T 1p9a_G 12 HLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV--DGTLPVLGTLDLSHN 87 (290)
T ss_dssp CCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC--CSCCTTCCEEECCSS
T ss_pred ccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccC--CCCCCcCCEEECCCC
Confidence 345677778888887533 37899999999999655 357899999999999987 777776 378999999999999
Q ss_pred CccccccCCccccCCCCCCEEeccCCCCCccc-hhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCcc
Q 039535 439 GYFNVLKLPLGMSKLGSLELLDISHSSIEELP-EELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRF 517 (769)
Q Consensus 439 ~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~ 517 (769)
.+..+|..+..+++|++|++++|+|+.+| ..+..+++|++|++++|. +..+|..++..+++|++|++++|.+..+
T Consensus 88 ---~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 88 ---QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp ---CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred ---cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCcc
Confidence 77788988899999999999999999887 458899999999999997 7788887788999999999999998743
Q ss_pred ccccccccccCCccchhhhhhcCCCceEEEEEeCCh
Q 039535 518 HEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY 553 (769)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~ 553 (769)
....+..+++|+.|+++.+.+
T Consensus 164 ---------------~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 164 ---------------PAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp ---------------CTTTTTTCTTCCEEECCSSCC
T ss_pred ---------------CHHHhcCcCCCCEEECCCCcC
Confidence 233457788888888876543
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.55 E-value=1.2e-14 Score=148.21 Aligned_cols=103 Identities=17% Similarity=0.312 Sum_probs=52.0
Q ss_pred CCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCccchhhhcCCCCc
Q 039535 401 TCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEELPEELKLLVNLK 480 (769)
Q Consensus 401 ~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 480 (769)
.+++|+.|++++|. +..++. +..+++|++|++++| .+..++. +..+++|++|++++|.++.++. +..+++|+
T Consensus 44 ~l~~L~~L~l~~~~-i~~~~~--~~~l~~L~~L~L~~n---~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~ 115 (291)
T 1h6t_A 44 ELNSIDQIIANNSD-IKSVQG--IQYLPNVTKLFLNGN---KLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLK 115 (291)
T ss_dssp HHHTCCEEECTTSC-CCCCTT--GGGCTTCCEEECCSS---CCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCC
T ss_pred hcCcccEEEccCCC-cccChh--HhcCCCCCEEEccCC---ccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCC
Confidence 34555555555444 444432 455555555555555 3333433 4555555555555555555433 45555555
Q ss_pred eeeccCCCcccccchHHhcCCCcCcEEEeeccCC
Q 039535 481 CLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGY 514 (769)
Q Consensus 481 ~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~ 514 (769)
+|++++|. +..++. +..+++|++|++++|.+
T Consensus 116 ~L~L~~n~-i~~~~~--l~~l~~L~~L~l~~n~l 146 (291)
T 1h6t_A 116 SLSLEHNG-ISDING--LVHLPQLESLYLGNNKI 146 (291)
T ss_dssp EEECTTSC-CCCCGG--GGGCTTCCEEECCSSCC
T ss_pred EEECCCCc-CCCChh--hcCCCCCCEEEccCCcC
Confidence 55555554 334432 44555555555555543
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=2.8e-15 Score=160.20 Aligned_cols=248 Identities=14% Similarity=0.101 Sum_probs=145.3
Q ss_pred CCCCCCCceEEEeecccchhcccC----cccccCCcccEEEeeccCccccc-cCCcc-------ccCCCCCCEEeccCCC
Q 039535 398 EVPTCPHLLTLFLDFNRELMMIAG----GYFQFMPSLKVLKISNIGYFNVL-KLPLG-------MSKLGSLELLDISHSS 465 (769)
Q Consensus 398 ~~~~~~~L~~L~l~~~~~~~~i~~----~~~~~l~~L~~L~l~~~~~~~~~-~l~~~-------~~~l~~L~~L~l~~~~ 465 (769)
.+..+++|++|++++|. +..... ..+..+++|++|++++|....+. .+|.. +..+++|++|++++|.
T Consensus 27 ~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 34667889999999886 433221 23677899999999887322222 22333 3678899999999998
Q ss_pred CCc-----cchhhhcCCCCceeeccCCCcccccchH---HhcCC---------CcCcEEEeeccCCCccccccccccccC
Q 039535 466 IEE-----LPEELKLLVNLKCLNLRWTDVLNKIPRQ---LISNL---------SRVRVLRMFATGYDRFHEASEDSVLFG 528 (769)
Q Consensus 466 i~~-----lp~~~~~l~~L~~L~l~~~~~l~~lp~~---~~~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~ 528 (769)
++. +|..+..+++|++|++++|......+.. .+..+ ++|++|++++|.+....
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~---------- 175 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS---------- 175 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG----------
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH----------
Confidence 875 6777888899999999988742221211 13333 88999999988875210
Q ss_pred CccchhhhhhcCCCceEEEEEeCChhhHH--HHHhcccccccceeEEEeccCCCccccccccccccccccceeeccccCc
Q 039535 529 GGEVLIQELLGLKYLEVLELTLGSYHALQ--ILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGL 606 (769)
Q Consensus 529 ~~~~~~~~l~~l~~L~~l~l~~~~~~~~~--~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l 606 (769)
-..+...+..+++|+.|+++.+.+.... .+.. ..+..+++|++|+|++|. +
T Consensus 176 -~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~-------------------------~~l~~~~~L~~L~Ls~n~-l 228 (386)
T 2ca6_A 176 -MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL-------------------------EGLAYCQELKVLDLQDNT-F 228 (386)
T ss_dssp -HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHH-------------------------TTGGGCTTCCEEECCSSC-C
T ss_pred -HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHH-------------------------HHhhcCCCccEEECcCCC-C
Confidence 0112246677888888888877654221 1111 134455666666665543 1
Q ss_pred ceEeeeeeccccccCCCccccccceEeecCccccccc------ccc--cccCCccEEeecCChhhhhhhccCccCCcccc
Q 039535 607 EELKIDYTEIAQKRREPFVFRSLRRVTMVSCHKLKDL------TFL--VFAPNLKSISLGDCDALEEIISVGKFAEVPEM 678 (769)
Q Consensus 607 ~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l------~~l--~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 678 (769)
+ ......++.....+++|++|+|++|. ++.. ..+ +.+++|+.|+|++|..-..-. ..++..
T Consensus 229 ~-----~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~-----~~l~~~ 297 (386)
T 2ca6_A 229 T-----HLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV-----RTLKTV 297 (386)
T ss_dssp H-----HHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH-----HHHHHH
T ss_pred C-----cHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH-----HHHHHH
Confidence 1 00001122222456778888888774 4442 223 237788888888775332100 001111
Q ss_pred cCCCCCCCcccccccccc
Q 039535 679 MGHLSPFENLQNLDLSYL 696 (769)
Q Consensus 679 ~~~~~~~~~L~~L~l~~c 696 (769)
+ ...+++|++|++++|
T Consensus 298 l--~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 298 I--DEKMPDLLFLELNGN 313 (386)
T ss_dssp H--HHHCTTCCEEECTTS
T ss_pred H--HhcCCCceEEEccCC
Confidence 1 024567888888885
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=3.3e-14 Score=136.04 Aligned_cols=152 Identities=17% Similarity=0.234 Sum_probs=126.8
Q ss_pred CCCcceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCcccccc-CCccccCCCCC
Q 039535 378 KGWENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLK-LPLGMSKLGSL 456 (769)
Q Consensus 378 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~-l~~~~~~l~~L 456 (769)
..+++++.|+++++.+..++.+..+++|++|++++|. +..++ .+..+++|++|++++| .+.. .+..+..+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~-~~~~~--~l~~l~~L~~L~l~~n---~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIH-ATNYN--PISGLSNLERLRIMGK---DVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCC-CSCCG--GGTTCTTCCEEEEECT---TCBGGGSCCCTTCTTC
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCC-CCcch--hhhcCCCCCEEEeECC---ccCcccChhhcCCCCC
Confidence 3456899999999999887788899999999999985 66654 3888999999999999 5544 46778899999
Q ss_pred CEEeccCCCCC-ccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhh
Q 039535 457 ELLDISHSSIE-ELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQ 535 (769)
Q Consensus 457 ~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (769)
++|++++|+++ ..|..+..+++|++|++++|..++.+|. +..+++|++|++++|.+..+ .
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~-----------------~ 175 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY-----------------R 175 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCC-----------------T
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcCh-----------------H
Confidence 99999999998 4677899999999999999976788885 88999999999999987632 2
Q ss_pred hhhcCCCceEEEEEeCChh
Q 039535 536 ELLGLKYLEVLELTLGSYH 554 (769)
Q Consensus 536 ~l~~l~~L~~l~l~~~~~~ 554 (769)
.+..+++|+.|++..+.+.
T Consensus 176 ~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TGGGCSSCCEEEECBC---
T ss_pred HhccCCCCCEEEeeCcccC
Confidence 6788999999999877654
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=4e-14 Score=141.21 Aligned_cols=172 Identities=23% Similarity=0.322 Sum_probs=144.5
Q ss_pred ceEEEEcCCccccCCCCCCCcceeEEEEeeccccccC--CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeecc
Q 039535 361 INFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLS--EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNI 438 (769)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~ 438 (769)
...+.+.+.++..+|... .+.++.|++++|.+..+. .+..+++|++|++++|. +..+++..|..+++|++|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCC
Confidence 456778888888888643 378999999999996654 47889999999999987 77788878999999999999999
Q ss_pred CccccccCC-ccccCCCCCCEEeccCCCCCccchh-hhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCc
Q 039535 439 GYFNVLKLP-LGMSKLGSLELLDISHSSIEELPEE-LKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDR 516 (769)
Q Consensus 439 ~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~ 516 (769)
.+..+| ..+..+++|++|++++|+|+.+|.. +..+++|++|++++|. +..+|+..++.+++|++|++++|.+..
T Consensus 94 ---~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 94 ---QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp ---CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred ---cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 666666 4568899999999999999988765 6889999999999997 778877668899999999999998874
Q ss_pred cccccccccccCCccchhhhhhcCCCceEEEEEeCCh
Q 039535 517 FHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY 553 (769)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~ 553 (769)
+ ....+..+++|+.|+++.+.+
T Consensus 170 ~---------------~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 170 V---------------PHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp C---------------CTTTTTTCTTCCEEECCSCCB
T ss_pred c---------------CHHHHhCCCCCCEEEeeCCce
Confidence 3 344678889999999987654
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=2e-15 Score=161.29 Aligned_cols=246 Identities=17% Similarity=0.133 Sum_probs=147.6
Q ss_pred cccCCcccEEEeeccCcccc--ccCCccccCCCCCCEEeccCCCCC----ccchhh-------hcCCCCceeeccCCCcc
Q 039535 424 FQFMPSLKVLKISNIGYFNV--LKLPLGMSKLGSLELLDISHSSIE----ELPEEL-------KLLVNLKCLNLRWTDVL 490 (769)
Q Consensus 424 ~~~l~~L~~L~l~~~~~~~~--~~l~~~~~~l~~L~~L~l~~~~i~----~lp~~~-------~~l~~L~~L~l~~~~~l 490 (769)
+..+++|++|++++|.+... ..++..+..+++|++|++++|.+. .+|..+ ..+++|++|++++|...
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 66778888888888832111 113344667788888888887544 334443 56778888888887633
Q ss_pred c----ccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcC---------CCceEEEEEeCChh--h
Q 039535 491 N----KIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGL---------KYLEVLELTLGSYH--A 555 (769)
Q Consensus 491 ~----~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l---------~~L~~l~l~~~~~~--~ 555 (769)
. .+|.. +..+++|++|++++|.+.... .......+..+ ++|+.|+++.+.+. .
T Consensus 108 ~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~-----------~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 108 PTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQA-----------GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp TTTHHHHHHH-HHHCTTCCEEECCSSCCHHHH-----------HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred HHHHHHHHHH-HHhCCCCCEEECcCCCCCHHH-----------HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 3 24544 677788888888877764210 00122223333 56666666555432 1
Q ss_pred HHHHHhcccccccceeEEEeccCCCccccccccccccccccceeeccccCcceEeeeeeccccccC-CCccccccceEee
Q 039535 556 LQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLNELQIHDCRGLEELKIDYTEIAQKRR-EPFVFRSLRRVTM 634 (769)
Q Consensus 556 ~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~L 634 (769)
...+ ...+..+++|++|++++|. ++ ...+..+.+ ....+++|++|+|
T Consensus 176 ~~~l--------------------------~~~l~~~~~L~~L~L~~n~-l~-----~~g~~~l~~~~l~~~~~L~~L~L 223 (386)
T 2ca6_A 176 MKEW--------------------------AKTFQSHRLLHTVKMVQNG-IR-----PEGIEHLLLEGLAYCQELKVLDL 223 (386)
T ss_dssp HHHH--------------------------HHHHHHCTTCCEEECCSSC-CC-----HHHHHHHHHTTGGGCTTCCEEEC
T ss_pred HHHH--------------------------HHHHHhCCCcCEEECcCCC-CC-----HhHHHHHHHHHhhcCCCccEEEC
Confidence 1111 1245566777777777652 11 111111233 4457899999999
Q ss_pred cCcccc-----cccc-cccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCccccccccccccccc-----cc
Q 039535 635 VSCHKL-----KDLT-FLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALKS-----IY 703 (769)
Q Consensus 635 ~~~~~l-----~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----~~ 703 (769)
++|. + ..++ .+..+++|+.|+|++|..-.... ..++..+ ....+++|++|+|++| .++. ++
T Consensus 224 s~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-----~~l~~~l-~~~~~~~L~~L~L~~n-~i~~~g~~~l~ 295 (386)
T 2ca6_A 224 QDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSARGA-----AAVVDAF-SKLENIGLQTLRLQYN-EIELDAVRTLK 295 (386)
T ss_dssp CSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH-----HHHHHHH-HTCSSCCCCEEECCSS-CCBHHHHHHHH
T ss_pred cCCC-CCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH-----HHHHHHH-hhccCCCeEEEECcCC-cCCHHHHHHHH
Confidence 9995 5 3333 47789999999999986322100 0011111 1134789999999997 5655 66
Q ss_pred CCC-CCCCCcceEeecCCc
Q 039535 704 WKP-LPFTYLKEMVVNGCD 721 (769)
Q Consensus 704 ~~~-~~~~~L~~L~i~~C~ 721 (769)
... ..+++|++|++++|+
T Consensus 296 ~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 296 TVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHCTTCCEEECTTSB
T ss_pred HHHHhcCCCceEEEccCCc
Confidence 544 458999999999884
No 100
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.52 E-value=3.3e-14 Score=144.24 Aligned_cols=151 Identities=23% Similarity=0.263 Sum_probs=123.3
Q ss_pred ceEEEEcCCccccCC--CCCCCcceeEEEEeeccccccC--CCCCCCCceEEEeecccchhcccCcccccCCcccEEEee
Q 039535 361 INFLVCAGAGLKEAP--DVKGWENVRRLSLMQNQIKVLS--EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKIS 436 (769)
Q Consensus 361 ~~~~~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~ 436 (769)
...+...+..+..++ .+..+++++.|++++|.+..++ .+..+++|++|++++|. +..++...|.++++|++|+++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECT
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECC
Confidence 344555565666654 4677899999999999986664 47889999999999997 777777779999999999999
Q ss_pred ccCccccccCCc-cccCCCCCCEEeccCCCCCc--cchhhhcCCCCceeeccCCCcccccchHHhcCCCcCc----EEEe
Q 039535 437 NIGYFNVLKLPL-GMSKLGSLELLDISHSSIEE--LPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVR----VLRM 509 (769)
Q Consensus 437 ~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~----~L~l 509 (769)
+| .+..++. .+..+++|++|++++|.++. +|..+..+++|++|++++|. +..++...+..+.+|+ +|++
T Consensus 109 ~n---~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 109 ET---NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp TS---CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEEC
T ss_pred CC---CccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeeec
Confidence 99 6666654 58899999999999999985 78899999999999999997 5666544466677776 8999
Q ss_pred eccCCCc
Q 039535 510 FATGYDR 516 (769)
Q Consensus 510 ~~~~~~~ 516 (769)
++|.+..
T Consensus 185 s~n~l~~ 191 (276)
T 2z62_A 185 SLNPMNF 191 (276)
T ss_dssp CSSCCCE
T ss_pred CCCcccc
Confidence 9998764
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.51 E-value=1.4e-14 Score=149.66 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=54.8
Q ss_pred CCCceEEEeecccchhcccCccc-ccCCcccEEEeeccCccccccC-C----ccccCCCCCCEEeccCCCCCccc-hhhh
Q 039535 402 CPHLLTLFLDFNRELMMIAGGYF-QFMPSLKVLKISNIGYFNVLKL-P----LGMSKLGSLELLDISHSSIEELP-EELK 474 (769)
Q Consensus 402 ~~~L~~L~l~~~~~~~~i~~~~~-~~l~~L~~L~l~~~~~~~~~~l-~----~~~~~l~~L~~L~l~~~~i~~lp-~~~~ 474 (769)
+++|++|++++|......+..++ ..+++|++|++++|. +... + ..+..+++|++|++++|+++.++ ..+.
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~---i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 166 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS---WATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR 166 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC---CSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc---ccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence 34466666666652223333222 556666666666662 2211 1 12234556666666666665443 3455
Q ss_pred cCCCCceeeccCCCcccc--cchH-HhcCCCcCcEEEeeccCCC
Q 039535 475 LLVNLKCLNLRWTDVLNK--IPRQ-LISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 475 ~l~~L~~L~l~~~~~l~~--lp~~-~~~~l~~L~~L~l~~~~~~ 515 (769)
.+++|++|++++|...+. ++.. .++.+++|++|++++|.+.
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 210 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME 210 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC
T ss_pred cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC
Confidence 566666666666653221 2111 1245556666666655543
No 102
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.50 E-value=7.3e-13 Score=141.38 Aligned_cols=291 Identities=13% Similarity=-0.002 Sum_probs=177.1
Q ss_pred CccccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhhhhcc----CC-CCEEEEEEecCCC-CHHH
Q 039535 20 ERTLVGLQSQLEQVWRCLIE----ESAGIIGLYGMGGVGKTTLLIHINNKFLESR----TN-FDFVIWVVVSKDP-RLEK 89 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~----~~-~~~~~w~~~~~~~-~~~~ 89 (769)
+++|+||+++++++.+++.. +..+.+.|+|++|+|||++|+.+++...... .. ...++|+++.... +...
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 47899999999999988753 3456899999999999999999999873321 11 3467888877766 8888
Q ss_pred HHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccccc---cccccccCCCCCCCCcEEEEEcCchhhh
Q 039535 90 IQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERLD---LTKVGVPLPGPKNTTSKVVFTTRFFDVC 166 (769)
Q Consensus 90 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~---~~~~~~~l~~~~~~~~~iiittr~~~~~ 166 (769)
++..++..+..................+.+.+...+.+||+||++.... .+.+...+.... .+..+|+||+.....
T Consensus 99 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 99 VLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTT
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchH
Confidence 8888888873322222344456677778888877666999999975321 122011111122 567888888865321
Q ss_pred ccc------CCCceEEeecCCHHHHHHHHHHHhcc--ccCCCchhHHHHHHHHHHHhC---CcchHH-HHHHHHh--c--
Q 039535 167 GSM------EAHRTFEVACLSEKDAWELFQEKVGE--ETLKSDHDIAELAQTVAKKCG---GLPLAL-VTIGRAM--A-- 230 (769)
Q Consensus 167 ~~~------~~~~~~~l~~l~~~e~~~l~~~~~~~--~~~~~~~~~~~~~~~i~~~~~---G~Plai-~~~~~~l--~-- 230 (769)
..+ .....+.+++++.++..+++..++.. .....+ .+..+.+++.++ |.|..+ ..+.... .
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~ 254 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASG 254 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 111 11238999999999999999988642 111222 245667777777 888733 3322221 1
Q ss_pred -CCCCHHHHHHHHHHHhcccCCCCCCccchhhHHHhhhcCCCccccchhhceecccCCCccccHHHHHHHHhhcCccccC
Q 039535 231 -SKKTAEEWRHAIEELGRSASEFPGLGKEVYPVLKFSYDSLPNETIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEES 309 (769)
Q Consensus 231 -~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~l~~~~~~L~~~~~~~~~~~~~~~p~~~~i~~~~l~~~w~~~g~~~~~ 309 (769)
..-+.+.+...+++... ..+..+++.|+. ..+..+..++....+..+. ... .-+++.+- .
T Consensus 255 ~~~i~~~~v~~~~~~~~~-------------~~~~~~~~~l~~-~~~~~l~al~~~~~~~~~~-~~~--~~~~~~~g-~- 315 (384)
T 2qby_B 255 GGIIRKEHVDKAIVDYEQ-------------ERLIEAVKALPF-HYKLALRSLIESEDVMSAH-KMY--TDLCNKFK-Q- 315 (384)
T ss_dssp SSCCCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHTCCBHHHHH-HHH--HHHHHHTT-C-
T ss_pred CCccCHHHHHHHHHHHhc-------------chHHHHHHcCCH-HHHHHHHHHHHhcccChHH-HHH--HHHHHHcC-C-
Confidence 12366777766655432 234556677776 5555554444411101111 011 11121110 0
Q ss_pred cccccccchhhhHHHHhhhcceeee
Q 039535 310 NRFGAENRGYYIVGTLVHTCLLEEI 334 (769)
Q Consensus 310 ~~~~~~~~~~~~l~~L~~~~ll~~~ 334 (769)
.........+++..|.+.|+++..
T Consensus 316 -~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 316 -KPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp -CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred -CCCCHHHHHHHHHHHHhCCCEEEE
Confidence 112335567889999999999874
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.50 E-value=3e-14 Score=159.50 Aligned_cols=105 Identities=18% Similarity=0.307 Sum_probs=58.2
Q ss_pred CCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCccchhhhcCCCC
Q 039535 400 PTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEELPEELKLLVNL 479 (769)
Q Consensus 400 ~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L 479 (769)
..+++|+.|++++|. +..++. +..|++|+.|+|++| .+..++. +..+++|++|+|++|.++.+| .+..+++|
T Consensus 40 ~~L~~L~~L~l~~n~-i~~l~~--l~~l~~L~~L~Ls~N---~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L 111 (605)
T 1m9s_A 40 NELNSIDQIIANNSD-IKSVQG--IQYLPNVTKLFLNGN---KLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKL 111 (605)
T ss_dssp HHHTTCCCCBCTTCC-CCCCTT--GGGCTTCCEEECTTS---CCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTC
T ss_pred hcCCCCCEEECcCCC-CCCChH--HccCCCCCEEEeeCC---CCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCC
Confidence 445555556665554 444432 555666666666666 4444433 555566666666666655544 35556666
Q ss_pred ceeeccCCCcccccchHHhcCCCcCcEEEeeccCCC
Q 039535 480 KCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 480 ~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 515 (769)
+.|+|++|. +..++. +..|++|+.|++++|.+.
T Consensus 112 ~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 112 KSLSLEHNG-ISDING--LVHLPQLESLYLGNNKIT 144 (605)
T ss_dssp CEEECTTSC-CCCCGG--GGGCTTCSEEECCSSCCC
T ss_pred CEEEecCCC-CCCCcc--ccCCCccCEEECCCCccC
Confidence 666666665 444443 555666666666665544
No 104
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.49 E-value=1.9e-12 Score=138.48 Aligned_cols=292 Identities=14% Similarity=0.084 Sum_probs=179.4
Q ss_pred CCccccchHHHHHHHHHHhhc----CCce--EEEEEcCCCCcHHHHHHHHHhhhhhccCC-CCEEEEEEecCCCCHHHHH
Q 039535 19 TERTLVGLQSQLEQVWRCLIE----ESAG--IIGLYGMGGVGKTTLLIHINNKFLESRTN-FDFVIWVVVSKDPRLEKIQ 91 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~----~~~~--~v~I~G~~GiGKTtLa~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~~~ 91 (769)
.++.++||+.+++++.+++.. +... .++|+|++|+|||++|+.+++.. ... ...++|+++....+...++
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~i~~~~~~~~~~~~ 91 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY---KDKTTARFVYINGFIYRNFTAII 91 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH---TTSCCCEEEEEETTTCCSHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH---hhhcCeeEEEEeCccCCCHHHHH
Confidence 347899999999999999864 2334 89999999999999999999987 222 3467888888888888999
Q ss_pred HHHHHHcCCCCCCCCCccHHHHHHHHHHHh--ccceEEEEEcccccc--cccccccccCCCCCC---CCcEEEEEcCchh
Q 039535 92 EDIGKRIGLVDDSWKSKSVEEKALDIFRSL--REKRIVLLLDDIWER--LDLTKVGVPLPGPKN---TTSKVVFTTRFFD 164 (769)
Q Consensus 92 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l--~~~~~llvlDd~~~~--~~~~~~~~~l~~~~~---~~~~iiittr~~~ 164 (769)
..++..++...+. ...........+.+.+ .+++.+||+||++.. .....+...+..... .+..+|++|+...
T Consensus 92 ~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 92 GEIARSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHHHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHHHHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 9999988754322 2334556666665555 356899999999754 222233222221111 3667777777653
Q ss_pred hhcccC-------CCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHh---------CCcchHHHHHHHH
Q 039535 165 VCGSME-------AHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKC---------GGLPLALVTIGRA 228 (769)
Q Consensus 165 ~~~~~~-------~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~G~Plai~~~~~~ 228 (769)
....+. ....+.+++++.++..+++...+.... .......+..+.+++.+ +|.|..+..+...
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~ 249 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL-AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYR 249 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB-CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHH
Confidence 322221 123699999999999999988875311 00112245677888888 7887655544432
Q ss_pred hc------C--CCCHHHHHHHHHHHhcccCCCCCCccchhhHHHhhhcCCCccccchhhceecccC---CCccccHHHHH
Q 039535 229 MA------S--KKTAEEWRHAIEELGRSASEFPGLGKEVYPVLKFSYDSLPNETIRSCFLYCCLYP---EDYGILKWDLI 297 (769)
Q Consensus 229 l~------~--~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~l~~~~~~L~~~~~~~~~~~~~~~p---~~~~i~~~~l~ 297 (769)
.. + .-+.+........... ..+...+..|+. ..+.++..++.+. .+..+....+.
T Consensus 250 a~~~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~ 315 (389)
T 1fnn_A 250 SAYAAQQNGRKHIAPEDVRKSSKEVLF-------------GISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAE 315 (389)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHSC-------------CCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHhh-------------hhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHH
Confidence 21 1 1244555554443321 112223445665 5565555555433 22134444444
Q ss_pred HHHhh----cCccccCcccccccchhhhHHHHhhhcceeee
Q 039535 298 DCWIG----EGFLEESNRFGAENRGYYIVGTLVHTCLLEEI 334 (769)
Q Consensus 298 ~~w~~----~g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 334 (769)
..+.. .|. ..-......+++..|.+.|++...
T Consensus 316 ~~~~~~~~~~~~-----~~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 316 ESYKIVCEEYGE-----RPRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHHHHHHTTC-----CCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHcCC-----CCCCHHHHHHHHHHHHhCCCeEEe
Confidence 33321 111 011335567889999999999875
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=8.6e-14 Score=138.81 Aligned_cols=151 Identities=17% Similarity=0.219 Sum_probs=122.1
Q ss_pred ceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCC-ccccCCCCCCEEe
Q 039535 382 NVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLP-LGMSKLGSLELLD 460 (769)
Q Consensus 382 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~-~~~~~l~~L~~L~ 460 (769)
..+.+++.++.+..++.- -.++|+.|++++|. +..+++..|.++++|++|++++| .+..++ ..+..+++|++|+
T Consensus 15 ~~~~l~~~~~~l~~~p~~-~~~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n---~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSG-IPADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYN---QLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGTEEECTTCCCSSCCSC-CCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS---CCCCCCTTTTTTCTTCCEEE
T ss_pred CCeEEecCCCCccccCCC-CCCCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCC---cCCccCHhHhccCCcCCEEE
Confidence 456788888888666532 13689999999887 77787777999999999999999 666655 4578899999999
Q ss_pred ccCCCCCccch-hhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhc
Q 039535 461 ISHSSIEELPE-ELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLG 539 (769)
Q Consensus 461 l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 539 (769)
+++|+++.+|. .+..+++|++|++++|. +..+|...+..+++|++|++++|.+..+ ....++.
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------------~~~~~~~ 153 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSI---------------PAGAFDK 153 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCC---------------CTTTTTT
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCcc---------------CHHHcCc
Confidence 99999998775 46889999999999997 7788877678999999999999988743 3345778
Q ss_pred CCCceEEEEEeCCh
Q 039535 540 LKYLEVLELTLGSY 553 (769)
Q Consensus 540 l~~L~~l~l~~~~~ 553 (769)
+++|+.|+++.+.+
T Consensus 154 l~~L~~L~L~~N~l 167 (251)
T 3m19_A 154 LTNLQTLSLSTNQL 167 (251)
T ss_dssp CTTCCEEECCSSCC
T ss_pred CcCCCEEECCCCcC
Confidence 88888888876543
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.48 E-value=2.1e-13 Score=133.62 Aligned_cols=147 Identities=26% Similarity=0.348 Sum_probs=120.6
Q ss_pred EEEEcCCccccCCCCCCCcceeEEEEeeccccccC--CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCc
Q 039535 363 FLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLS--EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGY 440 (769)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~ 440 (769)
-+.+.+.++..+|... .++++.|++++|.+..+. .+..+++|++|++++|. +..++...|..+++|++|++++|
T Consensus 23 ~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-- 98 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-- 98 (229)
T ss_dssp EEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS--
T ss_pred EeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC--
Confidence 3666777777777633 378999999999886653 47888999999999887 78888777889999999999999
Q ss_pred cccccCCcc-ccCCCCCCEEeccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCC
Q 039535 441 FNVLKLPLG-MSKLGSLELLDISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 441 ~~~~~l~~~-~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 515 (769)
.+..++.. +..+++|++|++++|+|+.+|..+..+++|++|++++|. +..++...+..+++|++|++.+|.+.
T Consensus 99 -~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 -QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred -cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 66666654 578899999999999999999888899999999999986 67777666888999999999988765
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.47 E-value=3.1e-13 Score=137.70 Aligned_cols=140 Identities=21% Similarity=0.319 Sum_probs=65.9
Q ss_pred EEcCCccccCCCCCCCcceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccc
Q 039535 365 VCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVL 444 (769)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~ 444 (769)
...+..+..++.+..+++++.|++++|.+..++.+..+++|+.|++++|. +..++. +..+++|++|++++| .+.
T Consensus 52 ~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~n---~i~ 125 (291)
T 1h6t_A 52 IANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENK-VKDLSS--LKDLKKLKSLSLEHN---GIS 125 (291)
T ss_dssp ECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCGGG--GTTCTTCCEEECTTS---CCC
T ss_pred EccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCc-CCCChh--hccCCCCCEEECCCC---cCC
Confidence 33333444444444445555555555555444334455555555555444 333332 444555555555555 333
Q ss_pred cCCccccCCCCCCEEeccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCC
Q 039535 445 KLPLGMSKLGSLELLDISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 445 ~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 515 (769)
.+ +.+..+++|++|++++|+++.+ ..+..+++|++|++++|. +..+++ +..+++|++|++++|.+.
T Consensus 126 ~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 126 DI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp CC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred CC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCC
Confidence 33 2344445555555555555544 234445555555555554 333433 445555555555555443
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.47 E-value=8e-14 Score=147.29 Aligned_cols=259 Identities=14% Similarity=0.123 Sum_probs=142.3
Q ss_pred EEEeeccccc-cCCC-CCCCCceEEEeecccchhcccC----cccccCC-cccEEEeeccCccccccC-CccccCC----
Q 039535 386 LSLMQNQIKV-LSEV-PTCPHLLTLFLDFNRELMMIAG----GYFQFMP-SLKVLKISNIGYFNVLKL-PLGMSKL---- 453 (769)
Q Consensus 386 l~l~~~~~~~-~~~~-~~~~~L~~L~l~~~~~~~~i~~----~~~~~l~-~L~~L~l~~~~~~~~~~l-~~~~~~l---- 453 (769)
+.++.+.+.. ++.+ ...++|+.|++++|. +...+. ..|..++ +|++|++++| .+... +..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N---~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN---SLGFKNSDELVQILAAI 78 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS---CGGGSCHHHHHHHHHTS
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC---CCCHHHHHHHHHHHhcc
Confidence 4455565532 2333 344558888888877 666654 5567777 7888888888 44433 2333332
Q ss_pred -CCCCEEeccCCCCCccc-hh----hhcC-CCCceeeccCCCcccccchHHhc----C-CCcCcEEEeeccCCCcccccc
Q 039535 454 -GSLELLDISHSSIEELP-EE----LKLL-VNLKCLNLRWTDVLNKIPRQLIS----N-LSRVRVLRMFATGYDRFHEAS 521 (769)
Q Consensus 454 -~~L~~L~l~~~~i~~lp-~~----~~~l-~~L~~L~l~~~~~l~~lp~~~~~----~-l~~L~~L~l~~~~~~~~~~~~ 521 (769)
++|++|++++|.++..+ .. +..+ ++|++|++++|. ++..+...+. . .++|++|++++|.+....
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~--- 154 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS--- 154 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC---
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH---
Confidence 78888888888887433 32 3444 788888888887 4444432222 3 358888888888765321
Q ss_pred ccccccCCccchhhhhhcCC-CceEEEEEeCChhhHHHHHhcccccccceeEEEeccCCCcccccccccccc-cccccee
Q 039535 522 EDSVLFGGGEVLIQELLGLK-YLEVLELTLGSYHALQILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADL-KHLNELQ 599 (769)
Q Consensus 522 ~~~~~~~~~~~~~~~l~~l~-~L~~l~l~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~-~~L~~L~ 599 (769)
.......+..++ +|+.|+++.+.+...... .....+..+ ++|++|+
T Consensus 155 --------~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~------------------------~l~~~l~~~~~~L~~L~ 202 (362)
T 3goz_A 155 --------SDELIQILAAIPANVNSLNLRGNNLASKNCA------------------------ELAKFLASIPASVTSLD 202 (362)
T ss_dssp --------HHHHHHHHHTSCTTCCEEECTTSCGGGSCHH------------------------HHHHHHHTSCTTCCEEE
T ss_pred --------HHHHHHHHhcCCccccEeeecCCCCchhhHH------------------------HHHHHHHhCCCCCCEEE
Confidence 112334445554 777777766654321110 000123333 3666666
Q ss_pred eccccCcceEeeeeeccccccCCCcc-ccccceEeecCccccccccc------ccccCCccEEeecCChhhhhhhccCcc
Q 039535 600 IHDCRGLEELKIDYTEIAQKRREPFV-FRSLRRVTMVSCHKLKDLTF------LVFAPNLKSISLGDCDALEEIISVGKF 672 (769)
Q Consensus 600 l~~~~~l~~l~l~~~~~~~~~~~~~~-~~~L~~L~L~~~~~l~~l~~------l~~l~~L~~L~l~~~~~l~~~~~~~~~ 672 (769)
+++|. ++. .....+...... .++|++|+|++| .+++... +..+++|+.|+|++|.. ..+..
T Consensus 203 Ls~N~-i~~-----~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l-~~i~~---- 270 (362)
T 3goz_A 203 LSANL-LGL-----KSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIV-KNMSK---- 270 (362)
T ss_dssp CTTSC-GGG-----SCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHH-TTCCH----
T ss_pred CCCCC-CCh-----hHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCc-cccCH----
Confidence 65542 111 000001111122 357888888888 4555322 45678888888888751 00000
Q ss_pred CCcccccCCCCCCCcccccccccc
Q 039535 673 AEVPEMMGHLSPFENLQNLDLSYL 696 (769)
Q Consensus 673 ~~~~~~~~~~~~~~~L~~L~l~~c 696 (769)
..+......+..+++|+.|+++++
T Consensus 271 ~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 271 EQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp HHHHHHHTTSTTCCEEEEECTTSC
T ss_pred HHHHHHHHHhccCCceEEEecCCC
Confidence 000011124556678888888885
No 109
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.46 E-value=9.5e-13 Score=140.70 Aligned_cols=294 Identities=14% Similarity=0.099 Sum_probs=178.9
Q ss_pred CCccccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhhhhcc---CCCCEEEEEEecCCCCHHHHH
Q 039535 19 TERTLVGLQSQLEQVWRCLIE----ESAGIIGLYGMGGVGKTTLLIHINNKFLESR---TNFDFVIWVVVSKDPRLEKIQ 91 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~~~~~~~w~~~~~~~~~~~~~ 91 (769)
.++.|+||+.+++++.+++.. +..+.+.|+|++|+|||++|+.+++...... .....++|+++....+...++
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 457899999999999999853 4456899999999999999999999873221 123467888888888899999
Q ss_pred HHHHHHcCCCCCCCCCccHHHHHHHHHHHh--ccceEEEEEcccccccc-------cccccccCCCCC-CCCcEEEEEcC
Q 039535 92 EDIGKRIGLVDDSWKSKSVEEKALDIFRSL--REKRIVLLLDDIWERLD-------LTKVGVPLPGPK-NTTSKVVFTTR 161 (769)
Q Consensus 92 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l--~~~~~llvlDd~~~~~~-------~~~~~~~l~~~~-~~~~~iiittr 161 (769)
..++..++...+. ......+....+.+.+ .+++.+||+||++.... +..+........ ..+..+|.||+
T Consensus 97 ~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 97 SAIAEAVGVRVPF-TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHSCCCCS-SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 9999999764332 3444666667777766 44689999999975321 111121111011 34557777776
Q ss_pred chhh--------hcccCCCceEEeecCCHHHHHHHHHHHhcc--ccCCCchhHHHHHHHHHHHhC---CcchHHHHHHHH
Q 039535 162 FFDV--------CGSMEAHRTFEVACLSEKDAWELFQEKVGE--ETLKSDHDIAELAQTVAKKCG---GLPLALVTIGRA 228 (769)
Q Consensus 162 ~~~~--------~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~--~~~~~~~~~~~~~~~i~~~~~---G~Plai~~~~~~ 228 (769)
.... .+.+. ...+.+++++.++..+++...+.. .....+ .+..+.+++.++ |.|..+..+...
T Consensus 176 ~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~ 251 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRV 251 (387)
T ss_dssp CSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 6532 11111 147899999999999999988643 111122 234667888887 999544333222
Q ss_pred h----c--C--CCCHHHHHHHHHHHhcccCCCCCCccchhhHHHhhhcCCCccccchhhceecccCCC-ccccHHHHHHH
Q 039535 229 M----A--S--KKTAEEWRHAIEELGRSASEFPGLGKEVYPVLKFSYDSLPNETIRSCFLYCCLYPED-YGILKWDLIDC 299 (769)
Q Consensus 229 l----~--~--~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~l~~~~~~L~~~~~~~~~~~~~~~p~~-~~i~~~~l~~~ 299 (769)
. . + .-+.+.+...++.... ..+...+..++. ..+..+..++.+..+ ..+....+.+.
T Consensus 252 a~~~a~~~~~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~ 317 (387)
T 2v1u_A 252 AGEIAERRREERVRREHVYSARAEIER-------------DRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYER 317 (387)
T ss_dssp HHHHHHHTTCSCBCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHhh-------------chHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 1 1 1 1256666666655422 124455677777 555555444422211 23434433332
Q ss_pred H--hhcCccccCcccccccchhhhHHHHhhhcceeee
Q 039535 300 W--IGEGFLEESNRFGAENRGYYIVGTLVHTCLLEEI 334 (769)
Q Consensus 300 w--~~~g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 334 (769)
. +++..- ..........++++.|...|+++..
T Consensus 318 ~~~~~~~~~---~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 318 YKELTSTLG---LEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHHHTT---CCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhcC---CCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 2 111110 0112334567789999999999874
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.45 E-value=6.6e-14 Score=156.65 Aligned_cols=151 Identities=21% Similarity=0.305 Sum_probs=107.9
Q ss_pred CCCCcceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCC
Q 039535 377 VKGWENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSL 456 (769)
Q Consensus 377 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L 456 (769)
...++.|+.|.+.++.+..++.+..+++|+.|+|++|. +..+++ +..+++|++|+|++| .+..+| .+..+++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N---~l~~l~-~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK-LTDIKP--LTNLKNLGWLFLDEN---KIKDLS-SLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSC-CCCCGG--GGGCTTCCEEECCSS---CCCCCT-TSTTCTTC
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCC-CCCChh--hccCCCCCEEECcCC---CCCCCh-hhccCCCC
Confidence 34456677777777777777777778888888888776 556655 777888888888887 555544 56777888
Q ss_pred CEEeccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhh
Q 039535 457 ELLDISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQE 536 (769)
Q Consensus 457 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (769)
++|+|++|.++.++ .+..+++|+.|+|++|. +..++. +..+++|++|++++|.+..+ .+
T Consensus 112 ~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~~---------------~~-- 170 (605)
T 1m9s_A 112 KSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISDI---------------VP-- 170 (605)
T ss_dssp CEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCCCC---------------GG--
T ss_pred CEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCCCc---------------hh--
Confidence 88888888877764 47777888888888876 555543 77888888888888776531 12
Q ss_pred hhcCCCceEEEEEeCChhh
Q 039535 537 LLGLKYLEVLELTLGSYHA 555 (769)
Q Consensus 537 l~~l~~L~~l~l~~~~~~~ 555 (769)
+..+++|+.|+++.+.+..
T Consensus 171 l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp GTTCTTCCEEECCSSCCCB
T ss_pred hccCCCCCEEECcCCCCCC
Confidence 6777777777777665543
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=5.6e-13 Score=127.41 Aligned_cols=147 Identities=16% Similarity=0.229 Sum_probs=123.3
Q ss_pred ceEEEEcCCccccCCCCCCCcceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCc
Q 039535 361 INFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGY 440 (769)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~ 440 (769)
...+...+..+..++.+..+++++.|++++|.+..++.+..+++|++|++++|. +.......+..+++|++|++++|
T Consensus 46 L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n-- 122 (197)
T 4ezg_A 46 LTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHS-- 122 (197)
T ss_dssp CCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCEEECCSS--
T ss_pred ccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCc-cCcccChhhcCCCCCCEEEecCC--
Confidence 345666666777888888889999999999988888888999999999999987 55533445899999999999999
Q ss_pred ccccc-CCccccCCCCCCEEeccCCC-CCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCC
Q 039535 441 FNVLK-LPLGMSKLGSLELLDISHSS-IEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 441 ~~~~~-l~~~~~~l~~L~~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 515 (769)
.+.. .|..+..+++|++|++++|. ++.+| .+..+++|++|++++|. +..++. +..+++|++|++++|.+.
T Consensus 123 -~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 123 -AHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp -BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEECBC---
T ss_pred -ccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEeeCcccC
Confidence 5543 46778899999999999998 88887 68999999999999997 667774 889999999999999864
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.44 E-value=1.8e-13 Score=137.19 Aligned_cols=155 Identities=20% Similarity=0.225 Sum_probs=126.8
Q ss_pred ccccCCCCCCCcceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCcc
Q 039535 370 GLKEAPDVKGWENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLG 449 (769)
Q Consensus 370 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~ 449 (769)
.+.+++.+..+++++.|++++|.+..++.+..+++|+.|++++|. +..+++ +..+++|++|++++| .+..+|..
T Consensus 30 ~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~L~~N---~l~~l~~~ 103 (263)
T 1xeu_A 30 SVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQ-ISDLSP--LKDLTKLEELSVNRN---RLKNLNGI 103 (263)
T ss_dssp CTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSC-CCCCGG--GTTCSSCCEEECCSS---CCSCCTTC
T ss_pred CcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCc-cCCChh--hccCCCCCEEECCCC---ccCCcCcc
Confidence 334444555667899999999999888888889999999999887 777776 889999999999999 66666543
Q ss_pred ccCCCCCCEEeccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCC
Q 039535 450 MSKLGSLELLDISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGG 529 (769)
Q Consensus 450 ~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 529 (769)
.. .+|++|++++|+++.++ .+..+++|++|++++|. +..++. +..+++|++|++++|.+..+
T Consensus 104 ~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~~~------------ 165 (263)
T 1xeu_A 104 PS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEITNT------------ 165 (263)
T ss_dssp CC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCCBC------------
T ss_pred cc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCcch------------
Confidence 33 89999999999999876 58889999999999997 677774 88999999999999988731
Q ss_pred ccchhhhhhcCCCceEEEEEeCCh
Q 039535 530 GEVLIQELLGLKYLEVLELTLGSY 553 (769)
Q Consensus 530 ~~~~~~~l~~l~~L~~l~l~~~~~ 553 (769)
..+..+++|+.|+++.+.+
T Consensus 166 -----~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 166 -----GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp -----TTSTTCCCCCEEEEEEEEE
T ss_pred -----HHhccCCCCCEEeCCCCcc
Confidence 5577888999998886654
No 113
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.43 E-value=1.3e-12 Score=139.58 Aligned_cols=298 Identities=13% Similarity=0.098 Sum_probs=174.5
Q ss_pred CCCccccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHH
Q 039535 18 PTERTLVGLQSQLEQVWRCLIE----ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQED 93 (769)
Q Consensus 18 ~~~~~~vgR~~~~~~l~~~l~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 93 (769)
..++.|+||+.+++.+.+++.. +..+.++|+|++|+||||||+.+++...........++|+++....+...++..
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 3457899999999999999863 345689999999999999999999987322111346788887776678888888
Q ss_pred HHHHcCCCCCCCCCccHHHHHHHHHHHhc--cceEEEEEccccccc------ccccccccCCCCCCCCcEEEEEcCchhh
Q 039535 94 IGKRIGLVDDSWKSKSVEEKALDIFRSLR--EKRIVLLLDDIWERL------DLTKVGVPLPGPKNTTSKVVFTTRFFDV 165 (769)
Q Consensus 94 l~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~~------~~~~~~~~l~~~~~~~~~iiittr~~~~ 165 (769)
++..++...+. ......+....+.+.+. +++.+||+||++... .+..+...+......+..+|+||+....
T Consensus 97 i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 97 LLESLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp HTTTTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred HHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 88887654322 33345566666666663 458999999996532 1222222121002335667777776543
Q ss_pred hcccC-------CCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhC---CcchHHHHHHHHhc-----
Q 039535 166 CGSME-------AHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCG---GLPLALVTIGRAMA----- 230 (769)
Q Consensus 166 ~~~~~-------~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~---G~Plai~~~~~~l~----- 230 (769)
...+. ....+.+++++.++..+++...+.... .......+..+.+++.++ |.|..+..+.....
T Consensus 176 ~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 176 VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAER 254 (386)
T ss_dssp GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 22211 124799999999999999998764211 011112345667777777 99985444332221
Q ss_pred -C--CCCHHHHHHHHHHHhcccCCCCCCccchhhHHHhhhcCCCccccchhhceecccCC-C-ccccHHHHHHHH--hhc
Q 039535 231 -S--KKTAEEWRHAIEELGRSASEFPGLGKEVYPVLKFSYDSLPNETIRSCFLYCCLYPE-D-YGILKWDLIDCW--IGE 303 (769)
Q Consensus 231 -~--~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~l~~~~~~L~~~~~~~~~~~~~~~p~-~-~~i~~~~l~~~w--~~~ 303 (769)
+ .-+.+.+..+++.... ..+...+..++. ..+..+..++.+.+ + ..+....+.+.+ +++
T Consensus 255 ~~~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~ 320 (386)
T 2qby_A 255 MKDTKVKEEYVYMAKEEIER-------------DRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICK 320 (386)
T ss_dssp TTCSSCCHHHHHHHHHHHHH-------------HHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHH
T ss_pred cCCCccCHHHHHHHHHHHhh-------------chHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHH
Confidence 1 1255666655544321 234445666766 45555444443211 1 123332222211 111
Q ss_pred CccccCcccccccchhhhHHHHhhhcceeee
Q 039535 304 GFLEESNRFGAENRGYYIVGTLVHTCLLEEI 334 (769)
Q Consensus 304 g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 334 (769)
.. .. ..-.......+++.|.+.|+++..
T Consensus 321 ~~-g~--~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 321 KL-GV--EAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HH-TC--CCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred hc-CC--CCCCHHHHHHHHHHHHhCCCEEEE
Confidence 10 00 011224456789999999999764
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.42 E-value=5.4e-14 Score=148.57 Aligned_cols=160 Identities=16% Similarity=0.172 Sum_probs=114.5
Q ss_pred CcceeEEEEeeccccccC------CCCCCC-CceEEEeecccchhcccCcccccC-----CcccEEEeeccCccccccCC
Q 039535 380 WENVRRLSLMQNQIKVLS------EVPTCP-HLLTLFLDFNRELMMIAGGYFQFM-----PSLKVLKISNIGYFNVLKLP 447 (769)
Q Consensus 380 ~~~l~~l~l~~~~~~~~~------~~~~~~-~L~~L~l~~~~~~~~i~~~~~~~l-----~~L~~L~l~~~~~~~~~~l~ 447 (769)
.++++.|++++|.+.... .+..++ +|++|++++|. +.......+..+ ++|++|++++| .+...+
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n---~l~~~~ 96 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGN---FLSYKS 96 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSS---CGGGSC
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCC---cCChHH
Confidence 345999999999986543 356788 89999999997 665544445554 99999999999 555443
Q ss_pred c-----cccCC-CCCCEEeccCCCCCccch-h----hhc-CCCCceeeccCCCccc----ccchHHhcCCC-cCcEEEee
Q 039535 448 L-----GMSKL-GSLELLDISHSSIEELPE-E----LKL-LVNLKCLNLRWTDVLN----KIPRQLISNLS-RVRVLRMF 510 (769)
Q Consensus 448 ~-----~~~~l-~~L~~L~l~~~~i~~lp~-~----~~~-l~~L~~L~l~~~~~l~----~lp~~~~~~l~-~L~~L~l~ 510 (769)
. .+..+ ++|++|++++|.++..+. . +.. .++|++|++++|.... .++.. +..++ +|++|+++
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-l~~~~~~L~~L~Ls 175 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI-LAAIPANVNSLNLR 175 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH-HHTSCTTCCEEECT
T ss_pred HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH-HhcCCccccEeeec
Confidence 2 24455 899999999999986543 2 333 3699999999997432 33333 45565 99999999
Q ss_pred ccCCCccccccccccccCCccchhhhhhcC-CCceEEEEEeCChhh
Q 039535 511 ATGYDRFHEASEDSVLFGGGEVLIQELLGL-KYLEVLELTLGSYHA 555 (769)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~l~l~~~~~~~ 555 (769)
+|.+.... .......+..+ ++|+.|+++.+.+..
T Consensus 176 ~n~l~~~~-----------~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 176 GNNLASKN-----------CAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp TSCGGGSC-----------HHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred CCCCchhh-----------HHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 99876421 11233455666 599999999887654
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.42 E-value=8.7e-13 Score=128.29 Aligned_cols=147 Identities=27% Similarity=0.348 Sum_probs=98.0
Q ss_pred EEEEcCCccccCCCCCCCcceeEEEEeeccccccC--CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCc
Q 039535 363 FLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLS--EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGY 440 (769)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~ 440 (769)
.+.+.+.++..+|... .++++.|.+++|.+..++ .+..+++|+.|++++|. +..+.+..|.++++|++|++++|
T Consensus 15 ~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N-- 90 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGN-- 90 (220)
T ss_dssp EEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSS--
T ss_pred EEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCC--
Confidence 4566666666666522 256777777777775554 46667777777777776 55665555777777777777777
Q ss_pred cccccCCcc-ccCCCCCCEEeccCCCCCcc-chhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCC
Q 039535 441 FNVLKLPLG-MSKLGSLELLDISHSSIEEL-PEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 441 ~~~~~l~~~-~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 515 (769)
.+..+|.. +..+++|++|++++|+|+.+ |..+..+++|++|++++|. +..++...+..+++|++|++++|...
T Consensus 91 -~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 -KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred -cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 55566544 46677777777777777755 3456677777777777776 55555544667777777777776643
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.40 E-value=9.8e-13 Score=127.94 Aligned_cols=145 Identities=17% Similarity=0.250 Sum_probs=79.0
Q ss_pred EEEcCCccccCCCCCCCcceeEEEEeeccccccC---CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCc
Q 039535 364 LVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLS---EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGY 440 (769)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~ 440 (769)
+.+.+..+..+|.. -.+.++.|.+++|.+..+. .+..+++|+.|++++|. +..+++..|..+++|++|++++|
T Consensus 16 l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N-- 91 (220)
T 2v70_A 16 VDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSN-- 91 (220)
T ss_dssp EECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS--
T ss_pred eEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCC--
Confidence 44444555555442 1234556666666664442 14556666666666555 55555545666666666666666
Q ss_pred cccccCCc-cccCCCCCCEEeccCCCCCcc-chhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCC
Q 039535 441 FNVLKLPL-GMSKLGSLELLDISHSSIEEL-PEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGY 514 (769)
Q Consensus 441 ~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~ 514 (769)
.+..++. .+..+++|++|++++|+|+.+ |..+..+++|++|++++|. +..+++..+..+++|++|++++|..
T Consensus 92 -~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 92 -RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp -CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred -ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCC
Confidence 4444433 355566666666666666644 3445556666666666665 3344323355666666666665554
No 117
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.40 E-value=1.6e-12 Score=125.45 Aligned_cols=147 Identities=25% Similarity=0.401 Sum_probs=111.3
Q ss_pred EEEEcCCccccCCCCCCCcceeEEEEeeccccccCC--CCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCc
Q 039535 363 FLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLSE--VPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGY 440 (769)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~ 440 (769)
.+.+.+.++..+|.. ..++++.|++++|.+..++. +..+++|++|++++|. +..++...|..+++|++|++++|
T Consensus 11 ~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-- 86 (208)
T 2o6s_A 11 TVECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTN-- 86 (208)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS--
T ss_pred EEEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCC--
Confidence 455666666666642 34678888888888865543 5778888888888876 67777777788888888888888
Q ss_pred cccccCCcc-ccCCCCCCEEeccCCCCCccchh-hhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCC
Q 039535 441 FNVLKLPLG-MSKLGSLELLDISHSSIEELPEE-LKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 441 ~~~~~l~~~-~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 515 (769)
.+..++.. +..+++|++|++++|+++.++.. +..+++|++|++++|. +..++...+..+++|++|++++|...
T Consensus 87 -~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 87 -QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred -cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee
Confidence 56666543 57888888888888888877654 6778888888888886 56676665778888888888888654
No 118
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.39 E-value=2.2e-13 Score=140.59 Aligned_cols=132 Identities=18% Similarity=0.086 Sum_probs=95.8
Q ss_pred cceeEEEEeecccccc--CCC--CCCCCceEEEeecccchhccc---CcccccCCcccEEEeeccCccccccCC-ccccC
Q 039535 381 ENVRRLSLMQNQIKVL--SEV--PTCPHLLTLFLDFNRELMMIA---GGYFQFMPSLKVLKISNIGYFNVLKLP-LGMSK 452 (769)
Q Consensus 381 ~~l~~l~l~~~~~~~~--~~~--~~~~~L~~L~l~~~~~~~~i~---~~~~~~l~~L~~L~l~~~~~~~~~~l~-~~~~~ 452 (769)
++++.|++++|.+... ..+ ..+++|++|++++|......+ ...+..+++|++|++++| .+..++ ..+..
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n---~l~~~~~~~~~~ 167 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA---HSPAFSCEQVRA 167 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC---SSCCCCTTSCCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC---CcchhhHHHhcc
Confidence 4588899998887432 334 778999999999887332221 123457899999999998 555554 56788
Q ss_pred CCCCCEEeccCCCCCc---cchh--hhcCCCCceeeccCCCcccccch---HHhcCCCcCcEEEeeccCCCc
Q 039535 453 LGSLELLDISHSSIEE---LPEE--LKLLVNLKCLNLRWTDVLNKIPR---QLISNLSRVRVLRMFATGYDR 516 (769)
Q Consensus 453 l~~L~~L~l~~~~i~~---lp~~--~~~l~~L~~L~l~~~~~l~~lp~---~~~~~l~~L~~L~l~~~~~~~ 516 (769)
+++|++|++++|++.. ++.. +..+++|++|++++|. ++.++. .+++.+++|++|++++|.+..
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~ 238 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRA 238 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCC
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCc
Confidence 8999999999998763 3322 3678899999999987 554443 235688999999999998764
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.38 E-value=3.2e-12 Score=141.36 Aligned_cols=79 Identities=14% Similarity=0.078 Sum_probs=46.6
Q ss_pred cceEeeeeeccccccCCCccccccceEeecCcccccccccccccCCc-------cEEeecCChhhhhhhccCccCCcccc
Q 039535 606 LEELKIDYTEIAQKRREPFVFRSLRRVTMVSCHKLKDLTFLVFAPNL-------KSISLGDCDALEEIISVGKFAEVPEM 678 (769)
Q Consensus 606 l~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~l~~l~~L-------~~L~l~~~~~l~~~~~~~~~~~~~~~ 678 (769)
|+.|++++|.+++++. . . ++|+.|+|++| .++.++.+. .+| +.|+|++|. ++.+|..
T Consensus 162 L~~L~Ls~N~L~~lp~-l-~-~~L~~L~Ls~N-~L~~lp~~~--~~L~~~~~~L~~L~Ls~N~----------l~~lp~~ 225 (571)
T 3cvr_A 162 LEVLSVRNNQLTFLPE-L-P-ESLEALDVSTN-LLESLPAVP--VRNHHSEETEIFFRCRENR----------ITHIPEN 225 (571)
T ss_dssp CCEEECCSSCCSCCCC-C-C-TTCCEEECCSS-CCSSCCCCC----------CCEEEECCSSC----------CCCCCGG
T ss_pred cCEEECCCCCCCCcch-h-h-CCCCEEECcCC-CCCchhhHH--HhhhcccccceEEecCCCc----------ceecCHH
Confidence 3334444444444333 1 2 88999999998 567776633 367 888888753 2344544
Q ss_pred cCCCCCCCccccccccccccccccc
Q 039535 679 MGHLSPFENLQNLDLSYLLALKSIY 703 (769)
Q Consensus 679 ~~~~~~~~~L~~L~l~~c~~l~~~~ 703 (769)
+. .+++|+.|+|++|+--+.+|
T Consensus 226 l~---~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 226 IL---SLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp GG---GSCTTEEEECCSSSCCHHHH
T ss_pred Hh---cCCCCCEEEeeCCcCCCcCH
Confidence 33 46788899998864333443
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.38 E-value=1.6e-12 Score=126.46 Aligned_cols=148 Identities=18% Similarity=0.277 Sum_probs=121.9
Q ss_pred EEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccC-CccccCCCCCCEEeccC
Q 039535 385 RLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKL-PLGMSKLGSLELLDISH 463 (769)
Q Consensus 385 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l-~~~~~~l~~L~~L~l~~ 463 (769)
.+.+.++.+..++.- -.++|+.|++++|. +..++...|..+++|++|++++| .+..+ |..+..+++|++|++++
T Consensus 15 ~v~c~~~~l~~iP~~-l~~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N---~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTN-LPETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNN---QISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp EEECTTSCCSSCCSS-CCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSS---CCCEECTTTTTTCSSCCEEECCS
T ss_pred EEEcCCCCcCcCCCc-cCcCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCC---cCCCcCHHHhhCCcCCCEEECCC
Confidence 566667777655531 13789999999987 88888878999999999999999 66565 67889999999999999
Q ss_pred CCCCccchh-hhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCC
Q 039535 464 SSIEELPEE-LKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKY 542 (769)
Q Consensus 464 ~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 542 (769)
|.|+.+|.. +..+++|++|++++|. +..+++..+..+++|++|++++|.+..+ ....+..+++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~~ 153 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTI---------------AKGTFSPLRA 153 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC---------------CTTTTTTCTT
T ss_pred CcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEE---------------CHHHHhCCCC
Confidence 999998876 5789999999999998 6666555589999999999999998753 3445778899
Q ss_pred ceEEEEEeCCh
Q 039535 543 LEVLELTLGSY 553 (769)
Q Consensus 543 L~~l~l~~~~~ 553 (769)
|+.|++..+.+
T Consensus 154 L~~L~L~~N~~ 164 (220)
T 2v9t_B 154 IQTMHLAQNPF 164 (220)
T ss_dssp CCEEECCSSCE
T ss_pred CCEEEeCCCCc
Confidence 99999886653
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.37 E-value=1.5e-12 Score=120.86 Aligned_cols=130 Identities=22% Similarity=0.264 Sum_probs=104.6
Q ss_pred cceeEEEEeecccc--ccCC-CCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCcccccc-CCccccCCCCC
Q 039535 381 ENVRRLSLMQNQIK--VLSE-VPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLK-LPLGMSKLGSL 456 (769)
Q Consensus 381 ~~l~~l~l~~~~~~--~~~~-~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~-l~~~~~~l~~L 456 (769)
++++.|++++|.+. .++. +..+++|++|++++|. +..+ ..+..+++|++|++++| .+.. +|..+..+++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~N---~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV--SNLPKLPKLKKLELSEN---RIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC--SSCCCCSSCCEEEEESC---CCCSCCCHHHHHCTTC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh--hhhccCCCCCEEECcCC---cCchHHHHHHhhCCCC
Confidence 67889999998886 5554 4788999999999887 6666 34888999999999999 5555 66666778999
Q ss_pred CEEeccCCCCCccc--hhhhcCCCCceeeccCCCcccccch---HHhcCCCcCcEEEeeccCCCcc
Q 039535 457 ELLDISHSSIEELP--EELKLLVNLKCLNLRWTDVLNKIPR---QLISNLSRVRVLRMFATGYDRF 517 (769)
Q Consensus 457 ~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~---~~~~~l~~L~~L~l~~~~~~~~ 517 (769)
++|++++|.++.+| ..+..+++|++|++++|. +..+|. ..+..+++|++|++.+|....+
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 99999999998876 578888999999999987 666665 4488899999999998887654
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.36 E-value=4.6e-12 Score=140.06 Aligned_cols=114 Identities=23% Similarity=0.331 Sum_probs=75.3
Q ss_pred ceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEec
Q 039535 382 NVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDI 461 (769)
Q Consensus 382 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l 461 (769)
+++.|++++|.+..++.- -+++|++|++++|. +..+| ..+++|++|++++| .+..+|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~-l~~~L~~L~Ls~N~-l~~ip----~~l~~L~~L~Ls~N---~l~~ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDN-LPPQITVLEITQNA-LISLP----ELPASLEYLDACDN---RLSTLPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSCCCSC-CCTTCSEEECCSSC-CSCCC----CCCTTCCEEECCSS---CCSCCCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCccCHh-HcCCCCEEECcCCC-Ccccc----cccCCCCEEEccCC---CCCCcch-hhc--CCCEEEC
Confidence 566777777766555431 13667777777776 55565 33577777777777 5555665 443 7777777
Q ss_pred cCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCC
Q 039535 462 SHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 462 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 515 (769)
++|+|+.+|. .+++|+.|++++|. ++.+|. .+++|++|++++|.+.
T Consensus 128 s~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 128 DNNQLTMLPE---LPALLEYINADNNQ-LTMLPE----LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCS
T ss_pred CCCcCCCCCC---cCccccEEeCCCCc-cCcCCC----cCCCcCEEECCCCCCC
Confidence 7777777766 56777777777776 455664 4667777777777655
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.36 E-value=2.1e-12 Score=136.18 Aligned_cols=170 Identities=24% Similarity=0.331 Sum_probs=137.0
Q ss_pred eEEEEcCCccccCCCCCCCcceeEEEEeeccccccCC--CC-CCCCceEEEeecccchhcccCcccccCCcccEEEeecc
Q 039535 362 NFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLSE--VP-TCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNI 438 (769)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~-~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~ 438 (769)
..+.+.+.++..+|.. -.+.++.|+|++|.+..++. +. .+++|+.|++++|. +..+++..|.++++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCC
Confidence 3577778888888763 34678999999999976643 55 89999999999887 88888878999999999999999
Q ss_pred CccccccCCc-cccCCCCCCEEeccCCCCCcc-chhhhcCCCCceeeccCCCcccccchHHh---cCCCcCcEEEeeccC
Q 039535 439 GYFNVLKLPL-GMSKLGSLELLDISHSSIEEL-PEELKLLVNLKCLNLRWTDVLNKIPRQLI---SNLSRVRVLRMFATG 513 (769)
Q Consensus 439 ~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~~---~~l~~L~~L~l~~~~ 513 (769)
.+..++. .+..+.+|++|+|++|.|+.+ |..+..+++|+.|++++|. +..+|..++ ..+++|++|++++|.
T Consensus 99 ---~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 99 ---HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp ---CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSC
T ss_pred ---cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 6666654 578999999999999999966 5668899999999999997 778888755 579999999999999
Q ss_pred CCccccccccccccCCccchhhhhhcCCC--ceEEEEEeCC
Q 039535 514 YDRFHEASEDSVLFGGGEVLIQELLGLKY--LEVLELTLGS 552 (769)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--L~~l~l~~~~ 552 (769)
+..+ ....+..++. |+.|++..+.
T Consensus 175 l~~l---------------~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 175 LKKL---------------PLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCCC---------------CHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcc---------------CHHHhhhccHhhcceEEecCCC
Confidence 8743 3445666666 3677777654
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.36 E-value=2.5e-12 Score=125.00 Aligned_cols=149 Identities=19% Similarity=0.279 Sum_probs=121.5
Q ss_pred eEEEEeeccccccCCCCCCCCceEEEeecccchhcc-cCcccccCCcccEEEeeccCccccccCCc-cccCCCCCCEEec
Q 039535 384 RRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMI-AGGYFQFMPSLKVLKISNIGYFNVLKLPL-GMSKLGSLELLDI 461 (769)
Q Consensus 384 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i-~~~~~~~l~~L~~L~l~~~~~~~~~~l~~-~~~~l~~L~~L~l 461 (769)
+.++++++.+..++. .-...+++|++++|. +..+ +..+|..+++|++|++++| .+..++. .+..+++|++|++
T Consensus 14 ~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N---~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE-HIPQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNN---KITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSS---CCCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCcccCcc-CCCCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCC---cCCEECHHHhCCCCCCCEEEC
Confidence 367888888866653 224567899999998 6666 4567899999999999999 6666654 6889999999999
Q ss_pred cCCCCCccchh-hhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcC
Q 039535 462 SHSSIEELPEE-LKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGL 540 (769)
Q Consensus 462 ~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 540 (769)
++|.++.++.. +..+++|++|++++|. +..+++..+..+++|++|++++|.+..+ .+..+..+
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l 152 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTV---------------APGAFDTL 152 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCB---------------CTTTTTTC
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEE---------------CHHHhcCC
Confidence 99999977654 8899999999999998 5666444488999999999999998743 45678889
Q ss_pred CCceEEEEEeCCh
Q 039535 541 KYLEVLELTLGSY 553 (769)
Q Consensus 541 ~~L~~l~l~~~~~ 553 (769)
++|+.|+++.+..
T Consensus 153 ~~L~~L~L~~N~l 165 (220)
T 2v70_A 153 HSLSTLNLLANPF 165 (220)
T ss_dssp TTCCEEECCSCCE
T ss_pred CCCCEEEecCcCC
Confidence 9999999986653
No 125
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.35 E-value=2.8e-13 Score=135.75 Aligned_cols=145 Identities=21% Similarity=0.214 Sum_probs=116.2
Q ss_pred CcceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEE
Q 039535 380 WENVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELL 459 (769)
Q Consensus 380 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L 459 (769)
+.++..+.+..+.+..+..+..+++|++|++++|. +..++ .+..+++|++|++++| .+..++. +..+++|++|
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~-i~~l~--~l~~l~~L~~L~L~~N---~i~~~~~-l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSN-IQSLA--GMQFFTNLKELHLSHN---QISDLSP-LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSC-CCCCT--TGGGCTTCCEEECCSS---CCCCCGG-GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCC-cccch--HHhhCCCCCEEECCCC---ccCCChh-hccCCCCCEE
Confidence 44556666777777666677788999999999886 77776 3888999999999999 6667766 8889999999
Q ss_pred eccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhc
Q 039535 460 DISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLG 539 (769)
Q Consensus 460 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 539 (769)
++++|+++.+|.... ++|++|++++|. +..++. +..+++|++|++++|.+..+ ..+..
T Consensus 91 ~L~~N~l~~l~~~~~--~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~~~-----------------~~l~~ 148 (263)
T 1xeu_A 91 SVNRNRLKNLNGIPS--ACLSRLFLDNNE-LRDTDS--LIHLKNLEILSIRNNKLKSI-----------------VMLGF 148 (263)
T ss_dssp ECCSSCCSCCTTCCC--SSCCEEECCSSC-CSBSGG--GTTCTTCCEEECTTSCCCBC-----------------GGGGG
T ss_pred ECCCCccCCcCcccc--CcccEEEccCCc-cCCChh--hcCcccccEEECCCCcCCCC-----------------hHHcc
Confidence 999999998875433 899999999997 667765 88999999999999987631 35777
Q ss_pred CCCceEEEEEeCCh
Q 039535 540 LKYLEVLELTLGSY 553 (769)
Q Consensus 540 l~~L~~l~l~~~~~ 553 (769)
+++|+.|+++.+.+
T Consensus 149 l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 149 LSKLEVLDLHGNEI 162 (263)
T ss_dssp CTTCCEEECTTSCC
T ss_pred CCCCCEEECCCCcC
Confidence 88888888775543
No 126
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.33 E-value=1.8e-11 Score=119.69 Aligned_cols=187 Identities=11% Similarity=0.093 Sum_probs=116.2
Q ss_pred CCccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHc
Q 039535 19 TERTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRI 98 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l 98 (769)
...+++||+..++.+.+++...+.+.+.|+|++|+|||++|+.+++.+.. .......+.++.........+...+....
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHG-GGGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred CHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhc-cccccceEEeccccccChHHHHHHHHHHh
Confidence 34679999999999999998765556999999999999999999988621 11112233444433333322222222111
Q ss_pred CCCCCCCCCccHHHHHHHHHHHhccceEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCchhh-hc-ccCCCce
Q 039535 99 GLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVFTTRFFDV-CG-SMEAHRT 174 (769)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iiittr~~~~-~~-~~~~~~~ 174 (769)
.... ...+++.++|+||++... ....+...+. ....+..+|+||+.... .. .......
T Consensus 94 ~~~~-----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~-~~~~~~~~i~~~~~~~~~~~~l~~r~~~ 155 (226)
T 2chg_A 94 RTAP-----------------IGGAPFKIIFLDEADALTADAQAALRRTME-MYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (226)
T ss_dssp TSCC-----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred cccC-----------------CCccCceEEEEeChhhcCHHHHHHHHHHHH-hcCCCCeEEEEeCChhhcCHHHHHhCce
Confidence 1100 012568899999997542 2223322222 22346678888775432 11 1122347
Q ss_pred EEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHH
Q 039535 175 FEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGR 227 (769)
Q Consensus 175 ~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 227 (769)
+.+.+++.++..+++.+.+.......+ .+..+.+++.++|.|..+..+..
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 156 FRFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999988754332222 35567888999999986555443
No 127
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.32 E-value=4.9e-12 Score=123.89 Aligned_cols=147 Identities=21% Similarity=0.273 Sum_probs=121.3
Q ss_pred eEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCcc-ccCCCCCCEEecc
Q 039535 384 RRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLG-MSKLGSLELLDIS 462 (769)
Q Consensus 384 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~-~~~l~~L~~L~l~ 462 (769)
..++.+++.+..++. .-.++|++|++++|. +..+++..|..+++|++|++++| .+..+|.. +..+++|++|+++
T Consensus 22 ~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N---~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 22 TTVDCRSKRHASVPA-GIPTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSN---QLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TEEECTTSCCSSCCS-CCCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS---CCCCCCTTTTTTCTTCCEEECC
T ss_pred CEeEccCCCcCccCC-CCCCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCC---CCCCcChhhcccCCCcCEEECC
Confidence 346666676655553 224899999999988 77777777999999999999999 67777754 5889999999999
Q ss_pred CCCCCccchh-hhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCC
Q 039535 463 HSSIEELPEE-LKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLK 541 (769)
Q Consensus 463 ~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 541 (769)
+|+|+.++.. +..+++|++|++++|. +..+|.. +..+++|++|++++|.+..+ ....+..++
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~ 159 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLKSI---------------PHGAFDRLS 159 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCCCC---------------CTTTTTTCT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCCcc---------------CHHHHhCCC
Confidence 9999988765 6889999999999997 7789887 78999999999999988743 234578889
Q ss_pred CceEEEEEeCC
Q 039535 542 YLEVLELTLGS 552 (769)
Q Consensus 542 ~L~~l~l~~~~ 552 (769)
+|+.|++..+.
T Consensus 160 ~L~~L~l~~N~ 170 (229)
T 3e6j_A 160 SLTHAYLFGNP 170 (229)
T ss_dssp TCCEEECTTSC
T ss_pred CCCEEEeeCCC
Confidence 99999988664
No 128
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.32 E-value=2.3e-11 Score=120.89 Aligned_cols=199 Identities=15% Similarity=0.118 Sum_probs=116.7
Q ss_pred CCccccchHHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 039535 19 TERTLVGLQSQLEQVWRCLIEES-AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKR 97 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 97 (769)
...+++||+.+++.+..++..+. .+.++|+|++|+|||++|+.+++.... ...... . ....... ...+...
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~-~~~~~~---~---~~~~~~~-~~~~~~~ 92 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC-ETGITA---T---PCGVCDN-CREIEQG 92 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC-TTCSCS---S---CCSCSHH-HHHHHTT
T ss_pred cHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC-CCCCCC---C---CCcccHH-HHHHhcc
Confidence 34679999999999999997643 457899999999999999999988721 111000 0 0000000 0001000
Q ss_pred cCCC--CCCCCCccHHHHHHHHHHHh-----ccceEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCchhhh-c
Q 039535 98 IGLV--DDSWKSKSVEEKALDIFRSL-----REKRIVLLLDDIWER--LDLTKVGVPLPGPKNTTSKVVFTTRFFDVC-G 167 (769)
Q Consensus 98 l~~~--~~~~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~--~~~~~~~~~l~~~~~~~~~iiittr~~~~~-~ 167 (769)
.... ...............+.+.+ .+++.++|+||++.. ..+..+...+. ....+..+|+||+..... .
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~-~~~~~~~~i~~t~~~~~~~~ 171 (250)
T 1njg_A 93 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE-EPPEHVKFLLATTDPQKLPV 171 (250)
T ss_dssp CCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHH-SCCTTEEEEEEESCGGGSCH
T ss_pred CCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHh-cCCCceEEEEEeCChHhCCH
Confidence 0000 00000011111222233332 346799999999753 23333433333 233467788887654321 1
Q ss_pred -ccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHh
Q 039535 168 -SMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAM 229 (769)
Q Consensus 168 -~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 229 (769)
.......+.+++++.++..+++...+.......+ .+..+.|++.++|+|..+..+...+
T Consensus 172 ~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 172 TILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1123468999999999999999988754332222 3557789999999999888776544
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=1.5e-12 Score=121.80 Aligned_cols=126 Identities=21% Similarity=0.273 Sum_probs=55.8
Q ss_pred cceeEEEEeeccccccCCCCCCC-CceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccc-cCCCCCCE
Q 039535 381 ENVRRLSLMQNQIKVLSEVPTCP-HLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGM-SKLGSLEL 458 (769)
Q Consensus 381 ~~l~~l~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~-~~l~~L~~ 458 (769)
.+++.|++++|.+..++.+..+. +|+.|++++|. +..+ ..|..+++|++|++++| .+..+|+.+ ..+++|++
T Consensus 19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~-l~~~--~~l~~l~~L~~L~Ls~N---~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKL--DGFPLLRRLKTLLVNNN---RICRIGEGLDQALPDLTE 92 (176)
T ss_dssp TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC-CCEE--CCCCCCSSCCEEECCSS---CCCEECSCHHHHCTTCCE
T ss_pred CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCC-CCcc--cccccCCCCCEEECCCC---cccccCcchhhcCCCCCE
Confidence 34455555555444443333322 45555555443 3333 12444455555555554 333333322 44445555
Q ss_pred EeccCCCCCccch--hhhcCCCCceeeccCCCcccccchH---HhcCCCcCcEEEeeccC
Q 039535 459 LDISHSSIEELPE--ELKLLVNLKCLNLRWTDVLNKIPRQ---LISNLSRVRVLRMFATG 513 (769)
Q Consensus 459 L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~---~~~~l~~L~~L~l~~~~ 513 (769)
|++++|.|+.+|. .+..+++|++|++++|. +..+|.. +++.+++|+.|+++.|.
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 5555554444443 34444445555554444 3333332 23444444444444443
No 130
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.30 E-value=1.1e-11 Score=119.70 Aligned_cols=146 Identities=23% Similarity=0.306 Sum_probs=117.1
Q ss_pred EEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCcc-ccCCCCCCEEeccC
Q 039535 385 RLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLG-MSKLGSLELLDISH 463 (769)
Q Consensus 385 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~-~~~l~~L~~L~l~~ 463 (769)
.+...++.+..++. .-.++|++|++++|. +..++...|..+++|++|++++| .+..++.. +..+++|++|++++
T Consensus 11 ~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 11 TVECYSQGRTSVPT-GIPAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGN---KLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp EEECCSSCCSSCCS-CCCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS---CCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEEecCCCccCCCC-CCCCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCC---ccCccChhhcCCCCCcCEEECCC
Confidence 44555555544442 235689999999987 77888888899999999999999 66677654 57899999999999
Q ss_pred CCCCccchh-hhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCC
Q 039535 464 SSIEELPEE-LKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKY 542 (769)
Q Consensus 464 ~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 542 (769)
|+++.+|.. +..+++|++|++++|. +..++...+..+++|++|++++|.+..+ ....+..+++
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~---------------~~~~~~~l~~ 149 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSV---------------PDGVFDRLTS 149 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC---------------CTTTTTTCTT
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCcccee---------------CHHHhccCCC
Confidence 999988765 6889999999999997 6777776688999999999999987643 3344677888
Q ss_pred ceEEEEEeC
Q 039535 543 LEVLELTLG 551 (769)
Q Consensus 543 L~~l~l~~~ 551 (769)
|+.|+++.+
T Consensus 150 L~~L~l~~N 158 (208)
T 2o6s_A 150 LQYIWLHDN 158 (208)
T ss_dssp CCEEECCSC
T ss_pred ccEEEecCC
Confidence 888887754
No 131
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.30 E-value=4.6e-12 Score=133.54 Aligned_cols=153 Identities=20% Similarity=0.213 Sum_probs=119.1
Q ss_pred eEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccc-cCCcccEEEeeccCccccccCC-ccccCCCCCCEEec
Q 039535 384 RRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQ-FMPSLKVLKISNIGYFNVLKLP-LGMSKLGSLELLDI 461 (769)
Q Consensus 384 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~-~l~~L~~L~l~~~~~~~~~~l~-~~~~~l~~L~~L~l 461 (769)
+.+++.++.+..++. .-...++.|++++|. +..++...|. .+++|++|+|++| .+..++ ..+..+++|++|+|
T Consensus 21 ~~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N---~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ-SLPSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHN---HLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCSSCCS-SCCTTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSS---CCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCccCc-cCCCCCCEEECCCCC-CCccChhhhhhcccccCEEECCCC---cCCccChhhccCCCCCCEEEC
Confidence 467778887766653 223568999999997 8888887787 9999999999999 666665 45889999999999
Q ss_pred cCCCCCccch-hhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcC
Q 039535 462 SHSSIEELPE-ELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGL 540 (769)
Q Consensus 462 ~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 540 (769)
++|+|+.++. .+..+++|++|++++|. +..+++..+..+++|++|++++|.+..++ ......+..+
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~------------~~~~~~~~~l 162 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFP------------VELIKDGNKL 162 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCC------------GGGTC----C
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeC------------HHHhcCcccC
Confidence 9999998765 47899999999999998 66665555899999999999999987542 1112223678
Q ss_pred CCceEEEEEeCChh
Q 039535 541 KYLEVLELTLGSYH 554 (769)
Q Consensus 541 ~~L~~l~l~~~~~~ 554 (769)
++|+.|+++.+.+.
T Consensus 163 ~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 163 PKLMLLDLSSNKLK 176 (361)
T ss_dssp TTCCEEECCSSCCC
T ss_pred CcCCEEECCCCCCC
Confidence 88999988876654
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.27 E-value=4.8e-12 Score=114.84 Aligned_cols=106 Identities=21% Similarity=0.314 Sum_probs=46.9
Q ss_pred CCceEEEeecccchh--cccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCc-cchhhhcCCCC
Q 039535 403 PHLLTLFLDFNRELM--MIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEE-LPEELKLLVNL 479 (769)
Q Consensus 403 ~~L~~L~l~~~~~~~--~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L 479 (769)
++|+.|++++|. +. .++. .+..+++|++|++++| .+..+ ..+..+++|++|++++|.++. +|..+..+++|
T Consensus 17 ~~l~~L~l~~n~-l~~~~~~~-~~~~l~~L~~L~l~~n---~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 17 SDVKELVLDNSR-SNEGKLEG-LTDEFEELEFLSTINV---GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGCSEEECTTCB-CBTTBCCS-CCTTCTTCCEEECTTS---CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred ccCeEEEccCCc-CChhHHHH-HHhhcCCCcEEECcCC---CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 344445554444 22 3332 2444455555555554 22222 334444455555555555443 44444444555
Q ss_pred ceeeccCCCcccccch-HHhcCCCcCcEEEeeccCCC
Q 039535 480 KCLNLRWTDVLNKIPR-QLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 480 ~~L~l~~~~~l~~lp~-~~~~~l~~L~~L~l~~~~~~ 515 (769)
++|++++|. +..++. ..++.+++|++|++++|.+.
T Consensus 91 ~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 91 THLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp CEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 555555544 333220 11444555555555554443
No 133
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.26 E-value=1.8e-11 Score=113.52 Aligned_cols=135 Identities=22% Similarity=0.208 Sum_probs=109.0
Q ss_pred CCCCCceEEEeecccchh--cccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCc-cchhhhcC
Q 039535 400 PTCPHLLTLFLDFNRELM--MIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEE-LPEELKLL 476 (769)
Q Consensus 400 ~~~~~L~~L~l~~~~~~~--~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l 476 (769)
...++|++|++++|. +. .+|.. +..+++|++|++++| .+..+ ..+..+++|++|++++|.++. +|..+..+
T Consensus 21 ~~~~~L~~L~l~~n~-l~~~~i~~~-~~~l~~L~~L~l~~n---~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 21 RTPAAVRELVLDNCK-SNDGKIEGL-TAEFVNLEFLSLINV---GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp SCTTSCSEEECCSCB-CBTTBCSSC-CGGGGGCCEEEEESS---CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred CCcccCCEEECCCCC-CChhhHHHH-HHhCCCCCEEeCcCC---CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence 345889999999998 55 67654 789999999999999 55555 678889999999999999996 78778889
Q ss_pred CCCceeeccCCCcccccch-HHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCCh
Q 039535 477 VNLKCLNLRWTDVLNKIPR-QLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY 553 (769)
Q Consensus 477 ~~L~~L~l~~~~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~ 553 (769)
++|++|++++|. +..+|. ..+..+++|++|++++|.+..++ ......+..+++|+.|++..+..
T Consensus 95 ~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~------------~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 95 PNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLN------------DYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp TTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTST------------THHHHHHTTCSSCCEETTEETTS
T ss_pred CCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchH------------HHHHHHHHhCccCcEecCCCCCh
Confidence 999999999997 666652 33889999999999999876431 11124678899999998876643
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.24 E-value=8.4e-12 Score=116.76 Aligned_cols=143 Identities=15% Similarity=0.144 Sum_probs=112.8
Q ss_pred ccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCccchhh-
Q 039535 395 VLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEELPEEL- 473 (769)
Q Consensus 395 ~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~- 473 (769)
..+.+..+.+|+.|++++|. +..++. +....++|++|++++| .+..+ ..+..+++|++|++++|.|+.+|..+
T Consensus 11 ~~~~~~~~~~L~~L~l~~n~-l~~i~~-~~~~~~~L~~L~Ls~N---~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 84 (176)
T 1a9n_A 11 QAAQYTNAVRDRELDLRGYK-IPVIEN-LGATLDQFDAIDFSDN---EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLD 84 (176)
T ss_dssp TSCEEECTTSCEEEECTTSC-CCSCCC-GGGGTTCCSEEECCSS---CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred HHHhcCCcCCceEEEeeCCC-CchhHH-hhhcCCCCCEEECCCC---CCCcc-cccccCCCCCEEECCCCcccccCcchh
Confidence 34456778999999999997 667753 3444459999999999 55555 57888999999999999999888654
Q ss_pred hcCCCCceeeccCCCcccccch-HHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCC
Q 039535 474 KLLVNLKCLNLRWTDVLNKIPR-QLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGS 552 (769)
Q Consensus 474 ~~l~~L~~L~l~~~~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~ 552 (769)
..+++|++|++++|. ++.+|. ..+..+++|++|++++|.+..++ ......+..+++|+.|+++.+.
T Consensus 85 ~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~------------~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 85 QALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKK------------HYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGST------------THHHHHHHHCTTCSEETTEECC
T ss_pred hcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcH------------hHHHHHHHHCCccceeCCCcCC
Confidence 899999999999997 677775 23889999999999999876431 1122357899999999998877
Q ss_pred hhhH
Q 039535 553 YHAL 556 (769)
Q Consensus 553 ~~~~ 556 (769)
....
T Consensus 152 ~~~~ 155 (176)
T 1a9n_A 152 LKER 155 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.23 E-value=1.3e-11 Score=111.94 Aligned_cols=124 Identities=25% Similarity=0.245 Sum_probs=104.5
Q ss_pred CcceeEEEEeecccc--ccCC-CCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCcccccc-CCccccCCCC
Q 039535 380 WENVRRLSLMQNQIK--VLSE-VPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLK-LPLGMSKLGS 455 (769)
Q Consensus 380 ~~~l~~l~l~~~~~~--~~~~-~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~-l~~~~~~l~~ 455 (769)
.++++.|++++|.+. .++. +..+++|++|++++|. +..+ ..+..+++|++|++++| .+.. +|..+..+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~n---~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI--ANLPKLNKLKKLELSDN---RVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC--TTCCCCTTCCEEECCSS---CCCSCTHHHHHHCTT
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc--hhhhcCCCCCEEECCCC---cccchHHHHhhhCCC
Confidence 378999999999987 5554 5889999999999987 6666 44899999999999999 5555 6777777999
Q ss_pred CCEEeccCCCCCccc--hhhhcCCCCceeeccCCCcccccch---HHhcCCCcCcEEEee
Q 039535 456 LELLDISHSSIEELP--EELKLLVNLKCLNLRWTDVLNKIPR---QLISNLSRVRVLRMF 510 (769)
Q Consensus 456 L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~---~~~~~l~~L~~L~l~ 510 (769)
|++|++++|.++.+| ..+..+++|++|++++|. +..+|. ..+..+++|++|+++
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 999999999999765 678999999999999997 666665 458899999999875
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.17 E-value=1e-10 Score=109.40 Aligned_cols=126 Identities=21% Similarity=0.365 Sum_probs=93.4
Q ss_pred eEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCcc-ccCCCCCCEEecc
Q 039535 384 RRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLG-MSKLGSLELLDIS 462 (769)
Q Consensus 384 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~-~~~l~~L~~L~l~ 462 (769)
+.+.+.++.+..++. ...++|+.|++++|. +..++...|..+++|++|++++| .+..+|.. +..+++|++|+++
T Consensus 10 ~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPT-GIPSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN---QIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TEEECCSSCCSSCCT-TCCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS---CCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCCccCCC-CCCCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC---cceEeChhHccCCCccCEEECC
Confidence 345566666654442 234678888888776 66777777788888888888888 56666544 5778888888888
Q ss_pred CCCCCccchh-hhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCC
Q 039535 463 HSSIEELPEE-LKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 463 ~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 515 (769)
+|+++.+|.. +..+++|++|++++|. +..+|..++..+++|++|++++|.+.
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 8888877654 5778888888888886 66777765677888888888888765
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.16 E-value=2.7e-11 Score=139.13 Aligned_cols=110 Identities=22% Similarity=0.283 Sum_probs=64.9
Q ss_pred CCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCccchhhhcCCC
Q 039535 399 VPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEELPEELKLLVN 478 (769)
Q Consensus 399 ~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~ 478 (769)
+..++.|++|+|++|. +..++...+ .+++|++|+|++| .+..+|..++.+++|++|+|++|.|+.+|..++.+++
T Consensus 220 ~~~l~~L~~L~Ls~n~-l~~l~~~~~-~l~~L~~L~Ls~N---~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ-IFNISANIF-KYDFLTRLYLNGN---SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp --CCCCCCEEECTTSC-CSCCCGGGG-GCCSCSCCBCTTS---CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred hccCCCCcEEECCCCC-CCCCChhhc-CCCCCCEEEeeCC---cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 4555666666666555 445555433 5666666666666 4445565566666666666666666666666666666
Q ss_pred CceeeccCCCcccccchHHhcCCCcCcEEEeeccCCC
Q 039535 479 LKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 479 L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 515 (769)
|++|+|++|. ++.+|.. ++.+++|++|++++|.+.
T Consensus 295 L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 295 LKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred CCEEECCCCC-CCccChh-hhcCCCccEEeCCCCccC
Confidence 6666666664 4556655 566666666666666554
No 138
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.15 E-value=4.5e-10 Score=113.25 Aligned_cols=171 Identities=8% Similarity=0.046 Sum_probs=110.4
Q ss_pred cccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCC----CCEEEEEEecCCCCHHHHHHH
Q 039535 22 TLVGLQSQLEQVWRCLIE----ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTN----FDFVIWVVVSKDPRLEKIQED 93 (769)
Q Consensus 22 ~~vgR~~~~~~l~~~l~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~----~~~~~w~~~~~~~~~~~~~~~ 93 (769)
.+.||+++++++...+.. +..+.+.|+|++|+|||++++.+++++.+.... .-.++++++....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 379999999999988764 566789999999999999999999998432211 125677888788889999999
Q ss_pred HHHHcCCCCCCCCCccHHHHHHHHHHHh---ccceEEEEEcccccccccccccccC--CCCCCCCcEEEEEcCchhh---
Q 039535 94 IGKRIGLVDDSWKSKSVEEKALDIFRSL---REKRIVLLLDDIWERLDLTKVGVPL--PGPKNTTSKVVFTTRFFDV--- 165 (769)
Q Consensus 94 l~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~~~~llvlDd~~~~~~~~~~~~~l--~~~~~~~~~iiittr~~~~--- 165 (769)
+++++..... ......+.+..+++.+ .+++++++||+++...+-+.+...+ +........||.++...+.
T Consensus 101 I~~~L~g~~~--~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 101 IWFAISKENL--CGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHSCCC----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHHhcCCCC--CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 9999965421 1222234445555543 4568999999997643222221111 1011222334444433211
Q ss_pred ------hcccCCCceEEeecCCHHHHHHHHHHHhcc
Q 039535 166 ------CGSMEAHRTFEVACLSEKDAWELFQEKVGE 195 (769)
Q Consensus 166 ------~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~ 195 (769)
.+.+. ...+.+.+++.+|..+++.+++..
T Consensus 179 ~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 179 QINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp HHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHHH
T ss_pred hcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHHh
Confidence 11211 246999999999999999998754
No 139
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.12 E-value=2.6e-10 Score=118.36 Aligned_cols=185 Identities=15% Similarity=0.154 Sum_probs=112.7
Q ss_pred CCccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHc
Q 039535 19 TERTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRI 98 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l 98 (769)
..++++||+..++.+.+++..+..+.+.|+|++|+|||++|+.+++.+.. ......+++++.+....... .+.++..+
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~-i~~~~~~~ 96 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG-RSYADGVLELNASDDRGIDV-VRNQIKHF 96 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHG-GGHHHHEEEECTTSCCSHHH-HHTHHHHH
T ss_pred CHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcC-CcccCCEEEecCccccChHH-HHHHHHHH
Confidence 34679999999999999998766555999999999999999999998621 11111233443332222211 11111111
Q ss_pred CCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCchhh-hcc-cCCCc
Q 039535 99 GLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVFTTRFFDV-CGS-MEAHR 173 (769)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iiittr~~~~-~~~-~~~~~ 173 (769)
.... ..+ .+++.++|+||++... ....+...+. ....++.+|++|+.... ... .....
T Consensus 97 ~~~~----------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le-~~~~~~~~il~~~~~~~l~~~l~sr~~ 159 (323)
T 1sxj_B 97 AQKK----------------LHLPPGKHKIVILDEADSMTAGAQQALRRTME-LYSNSTRFAFACNQSNKIIEPLQSQCA 159 (323)
T ss_dssp HHBC----------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHH-HTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred Hhcc----------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHh-ccCCCceEEEEeCChhhchhHHHhhce
Confidence 0000 011 3458899999997532 2233332222 22345677777765432 111 12345
Q ss_pred eEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHH
Q 039535 174 TFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTI 225 (769)
Q Consensus 174 ~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 225 (769)
.+.+.+++.++..+++...+...+...+ .+.+..+++.++|.|..+...
T Consensus 160 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~a~~~ 208 (323)
T 1sxj_B 160 ILRYSKLSDEDVLKRLLQIIKLEDVKYT---NDGLEAIIFTAEGDMRQAINN 208 (323)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHH
T ss_pred EEeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 8999999999999999987754332222 355778999999999654333
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.12 E-value=1.4e-10 Score=110.04 Aligned_cols=126 Identities=20% Similarity=0.300 Sum_probs=87.1
Q ss_pred eEEEEeeccccccCCCCCCCCceEEEeecccchhcccC-cccccCCcccEEEeeccCccccccC-CccccCCCCCCEEec
Q 039535 384 RRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAG-GYFQFMPSLKVLKISNIGYFNVLKL-PLGMSKLGSLELLDI 461 (769)
Q Consensus 384 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~-~~~~~l~~L~~L~l~~~~~~~~~~l-~~~~~~l~~L~~L~l 461 (769)
+.++++++.+..++.. -..+|++|++++|. +..++. ..|..+++|++|++++| .+..+ |..+..+++|++|++
T Consensus 11 ~~l~~s~~~l~~ip~~-~~~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N---~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-IPLHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRN---QLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSS---CCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcCcCccC-CCCCCCEEECCCCc-CCccCCccccccCCCCCEEECCCC---CCCCcCHhHcCCcccCCEEEC
Confidence 3566666666555431 12378888888776 666654 35778888888888888 55555 566777888888888
Q ss_pred cCCCCCccchh-hhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCC
Q 039535 462 SHSSIEELPEE-LKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 462 ~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 515 (769)
++|+|+.++.. +..+++|++|++++|...+..|.. +..+++|++|++++|...
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTS-STTCTTCCEEECTTCCBC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHH-hhcCCCCCEEEeCCCCcc
Confidence 88888865543 677888888888888733333433 777888888888887754
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.11 E-value=2e-10 Score=108.83 Aligned_cols=123 Identities=21% Similarity=0.284 Sum_probs=76.5
Q ss_pred EEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCC-ccccCCCCCCEEeccC
Q 039535 385 RLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLP-LGMSKLGSLELLDISH 463 (769)
Q Consensus 385 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~-~~~~~l~~L~~L~l~~ 463 (769)
.++++++.+..++.- -.++|++|++++|. +..+|. .|.++++|++|++++| .+..++ ..+..+++|++|++++
T Consensus 14 ~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~-i~~ip~-~~~~l~~L~~L~Ls~N---~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKG-IPRDVTELYLDGNQ-FTLVPK-ELSNYKHLTLIDLSNN---RISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp EEECTTSCCSSCCSC-CCTTCCEEECCSSC-CCSCCG-GGGGCTTCCEEECCSS---CCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEEcCCCCCCcCCCC-CCCCCCEEECCCCc-CchhHH-HhhcccCCCEEECCCC---cCCEeCHhHccCCCCCCEEECCC
Confidence 344555555444321 12467777777665 556653 4667777777777777 455554 3466677777777777
Q ss_pred CCCCccch-hhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCC
Q 039535 464 SSIEELPE-ELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGY 514 (769)
Q Consensus 464 ~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~ 514 (769)
|.|+.++. .+..+++|++|++++|. +..+|...+..+++|++|++.+|..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 77775543 46667777777777775 5566655566677777777776654
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.10 E-value=2.1e-10 Score=108.76 Aligned_cols=124 Identities=19% Similarity=0.248 Sum_probs=104.7
Q ss_pred eEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCccch-hhhcCCCCceeec
Q 039535 406 LTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEELPE-ELKLLVNLKCLNL 484 (769)
Q Consensus 406 ~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l 484 (769)
+++++++|. +..+|...+ ++|++|++++| .+..+|..+..+++|++|++++|.|+.++. .+..+++|++|++
T Consensus 13 ~~l~~~~~~-l~~ip~~~~---~~l~~L~L~~n---~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKGIP---RDVTELYLDGN---QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSC-CSSCCSCCC---TTCCEEECCSS---CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCC-CCcCCCCCC---CCCCEEECCCC---cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 578888776 778887543 68999999999 777888899999999999999999998764 5889999999999
Q ss_pred cCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCC
Q 039535 485 RWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGS 552 (769)
Q Consensus 485 ~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~ 552 (769)
++|. +..+++..+..+++|++|++++|.+..+ ....+..+++|+.|++..+.
T Consensus 86 s~N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 86 SYNR-LRCIPPRTFDGLKSLRLLSLHGNDISVV---------------PEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CSSC-CCBCCTTTTTTCTTCCEEECCSSCCCBC---------------CTTTTTTCTTCCEEECCSSC
T ss_pred CCCc-cCEeCHHHhCCCCCCCEEECCCCCCCee---------------ChhhhhcCccccEEEeCCCC
Confidence 9998 7777766689999999999999998753 33456788999999988664
No 143
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.09 E-value=1.8e-10 Score=128.06 Aligned_cols=102 Identities=20% Similarity=0.263 Sum_probs=49.5
Q ss_pred ceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCccchhhhcCCCCceeec
Q 039535 405 LLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEELPEELKLLVNLKCLNL 484 (769)
Q Consensus 405 L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l 484 (769)
|++|++++|. +..+|. +..+++|++|++++| .+..+|..++.+++|++|+|++|.|+.+| .++.+++|++|++
T Consensus 443 L~~L~Ls~n~-l~~lp~--~~~l~~L~~L~Ls~N---~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 443 VRVLHLAHKD-LTVLCH--LEQLLLVTHLDLSHN---RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLL 515 (567)
T ss_dssp CSEEECTTSC-CSSCCC--GGGGTTCCEEECCSS---CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEEC
T ss_pred ceEEEecCCC-CCCCcC--ccccccCcEeecCcc---cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEEC
Confidence 4455555443 444432 444555555555555 34444545555555555555555555544 4445555555555
Q ss_pred cCCCccccc--chHHhcCCCcCcEEEeeccCCC
Q 039535 485 RWTDVLNKI--PRQLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 485 ~~~~~l~~l--p~~~~~~l~~L~~L~l~~~~~~ 515 (769)
++|. +..+ |.. ++.+++|++|++++|.+.
T Consensus 516 s~N~-l~~~~~p~~-l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 516 CNNR-LQQSAAIQP-LVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CSSC-CCSSSTTGG-GGGCTTCCEEECTTSGGG
T ss_pred CCCC-CCCCCCcHH-HhcCCCCCEEEecCCcCC
Confidence 5554 3333 333 445555555555555443
No 144
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.06 E-value=1e-10 Score=134.30 Aligned_cols=104 Identities=23% Similarity=0.255 Sum_probs=49.2
Q ss_pred CcceeEEEEeeccccccC-CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCE
Q 039535 380 WENVRRLSLMQNQIKVLS-EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLEL 458 (769)
Q Consensus 380 ~~~l~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~ 458 (769)
++.|+.|+|++|.+..++ .+..+++|++|+|++|. +..+|.. |.++++|++|+|++| .+..+|..++.+.+|++
T Consensus 223 l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~Ls~N---~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAE-IKNLSNLRVLDLSHN---RLTSLPAELGSCFQLKY 297 (727)
T ss_dssp CCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGG-GGGGTTCCEEECTTS---CCSSCCSSGGGGTTCSE
T ss_pred CCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-CcccChh-hhCCCCCCEEeCcCC---cCCccChhhcCCCCCCE
Confidence 344455555554443332 23344455555555444 3344432 444555555555555 33344444445555555
Q ss_pred EeccCCCCCccchhhhcCCCCceeeccCCC
Q 039535 459 LDISHSSIEELPEELKLLVNLKCLNLRWTD 488 (769)
Q Consensus 459 L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~ 488 (769)
|+|++|.|+.+|..++.+++|++|+|++|.
T Consensus 298 L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 298 FYFFDNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp EECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred EECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence 555555555454444455555555555554
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.05 E-value=5e-10 Score=106.15 Aligned_cols=128 Identities=24% Similarity=0.292 Sum_probs=106.1
Q ss_pred eEEEEcCCccccCCCCCCCcceeEEEEeeccccccCC---CCCCCCceEEEeecccchhcccCcccccCCcccEEEeecc
Q 039535 362 NFLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLSE---VPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNI 438 (769)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~ 438 (769)
..+.+.+.++..+|... ..+++.|.+++|.+..++. +..+++|++|++++|. +..+++..|..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCC
Confidence 45677777888887633 3589999999999976653 7889999999999997 77777777999999999999999
Q ss_pred CccccccCCc-cccCCCCCCEEeccCCCCCcc-chhhhcCCCCceeeccCCCcccccc
Q 039535 439 GYFNVLKLPL-GMSKLGSLELLDISHSSIEEL-PEELKLLVNLKCLNLRWTDVLNKIP 494 (769)
Q Consensus 439 ~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp 494 (769)
.+..++. .+..+++|++|++++|+|+.+ |..+..+++|++|++++|......+
T Consensus 89 ---~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 89 ---KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp ---CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred ---cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 6666654 478999999999999999955 6778999999999999998554444
No 146
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.05 E-value=2.4e-09 Score=110.96 Aligned_cols=178 Identities=14% Similarity=0.109 Sum_probs=108.0
Q ss_pred CCccccchHHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHH
Q 039535 19 TERTLVGLQSQLEQVWRCLIE-----ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQED 93 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 93 (769)
.-++|||++..++.+.+++.. .....+.|+|++|+|||++|+.+++.. .. ...++++........+...
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~---~~~~~~~~~~~~~~~l~~~ 83 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GV---NLRVTSGPAIEKPGDLAAI 83 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TC---CEEEECTTTCCSHHHHHHH
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CC---CEEEEeccccCChHHHHHH
Confidence 346799999999999888752 234678899999999999999999887 21 2344444333222222211
Q ss_pred HHHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccccc--cccccccCC--------CC---------CCCCc
Q 039535 94 IGKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERLD--LTKVGVPLP--------GP---------KNTTS 154 (769)
Q Consensus 94 l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~--~~~~~~~l~--------~~---------~~~~~ 154 (769)
+.. .+ ..+.++++||++.... ...+...+. .. .....
T Consensus 84 l~~-----------------------~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 84 LAN-----------------------SL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp HTT-----------------------TC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred HHH-----------------------hc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 110 01 2456888999965321 111100000 00 00234
Q ss_pred EEEEEcCchh-hhccc-CC-CceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHh
Q 039535 155 KVVFTTRFFD-VCGSM-EA-HRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAM 229 (769)
Q Consensus 155 ~iiittr~~~-~~~~~-~~-~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 229 (769)
.+|.+|.... +...+ .. ...+.+.+++.++..+++...+.......+ .+..+.+++.++|.|..+..+...+
T Consensus 140 ~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT---EEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 5666655432 21111 11 257999999999999999988765442333 3567788999999999887776554
No 147
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.05 E-value=2.5e-10 Score=126.95 Aligned_cols=121 Identities=23% Similarity=0.261 Sum_probs=104.8
Q ss_pred ceeEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEec
Q 039535 382 NVRRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDI 461 (769)
Q Consensus 382 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l 461 (769)
.++.|++++|.+..++.+..+++|+.|++++|. +..+|.. +..+++|++|+|++| .+..+| .++.+++|++|++
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~Ls~N---~l~~lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR-LRALPPA-LAALRCLEVLQASDN---ALENVD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSC-CCCCCGG-GGGCTTCCEEECCSS---CCCCCG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCccc-ccccchh-hhcCCCCCEEECCCC---CCCCCc-ccCCCCCCcEEEC
Confidence 488999999999888889999999999999997 7788764 899999999999999 666777 8999999999999
Q ss_pred cCCCCCcc--chhhhcCCCCceeeccCCCcccccchH---HhcCCCcCcEEEe
Q 039535 462 SHSSIEEL--PEELKLLVNLKCLNLRWTDVLNKIPRQ---LISNLSRVRVLRM 509 (769)
Q Consensus 462 ~~~~i~~l--p~~~~~l~~L~~L~l~~~~~l~~lp~~---~~~~l~~L~~L~l 509 (769)
++|.|+.+ |..++.+++|+.|++++|. +..+|+. ++..+++|+.|++
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 99999977 8899999999999999998 5555442 2445888888864
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.05 E-value=7e-10 Score=115.20 Aligned_cols=119 Identities=16% Similarity=0.154 Sum_probs=64.2
Q ss_pred CcceeEEEEeeccc-cccCCCCC-CCCceEEEeecccchh--cccCcccccCCcccEEEeeccCccccccCC-ccccC--
Q 039535 380 WENVRRLSLMQNQI-KVLSEVPT-CPHLLTLFLDFNRELM--MIAGGYFQFMPSLKVLKISNIGYFNVLKLP-LGMSK-- 452 (769)
Q Consensus 380 ~~~l~~l~l~~~~~-~~~~~~~~-~~~L~~L~l~~~~~~~--~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~-~~~~~-- 452 (769)
+.++..|.+.++-- ..+..+.. +++|++|+|++|. +. ...... ++.++.+.+..+ .+| ..+.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~-i~~~~~~~~~---~~~~~~~~~~~~------~I~~~aF~~~~ 93 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAE-IKMYSGKAGT---YPNGKFYIYMAN------FVPAYAFSNVV 93 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEE-ECCEEESSSS---SGGGCCEEECTT------EECTTTTEEEE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcce-eEEecCcccc---cccccccccccc------ccCHHHhcccc
Confidence 34566666665411 11112222 6667777777666 33 222221 222444444444 222 23344
Q ss_pred ------CCCCCEEeccCCCCCccchh-hhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEee
Q 039535 453 ------LGSLELLDISHSSIEELPEE-LKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMF 510 (769)
Q Consensus 453 ------l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~ 510 (769)
|.+|+.|++.+ +++.++.. +..|++|+.+++.+|. +..++..++..+.++..+...
T Consensus 94 ~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~ 156 (329)
T 3sb4_A 94 NGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLG 156 (329)
T ss_dssp TTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTT
T ss_pred cccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCc
Confidence 77777777777 67766544 6677777777777765 446666656666655555443
No 149
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.04 E-value=9.2e-10 Score=102.88 Aligned_cols=127 Identities=23% Similarity=0.356 Sum_probs=105.3
Q ss_pred EEEEcCCccccCCCCCCCcceeEEEEeeccccccCC--CCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCc
Q 039535 363 FLVCAGAGLKEAPDVKGWENVRRLSLMQNQIKVLSE--VPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGY 440 (769)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~ 440 (769)
-+.+.+.++..+|. ...++++.|.+++|.+..++. +..+++|++|++++|. +..+++..|..+++|++|++++|
T Consensus 11 ~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N-- 86 (177)
T 2o6r_A 11 EIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHEN-- 86 (177)
T ss_dssp EEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS--
T ss_pred EEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCC--
Confidence 35566667777774 334799999999999976653 6889999999999987 78888888899999999999999
Q ss_pred cccccCCcc-ccCCCCCCEEeccCCCCCccchh-hhcCCCCceeeccCCCcccccc
Q 039535 441 FNVLKLPLG-MSKLGSLELLDISHSSIEELPEE-LKLLVNLKCLNLRWTDVLNKIP 494 (769)
Q Consensus 441 ~~~~~l~~~-~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp 494 (769)
.+..+|.. +..+++|++|++++|.++.+|.. +..+++|++|++++|......|
T Consensus 87 -~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 -KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred -CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 66677654 68899999999999999988876 5789999999999998555444
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.03 E-value=9.6e-12 Score=118.86 Aligned_cols=110 Identities=21% Similarity=0.200 Sum_probs=80.1
Q ss_pred CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCccchhhhcCC
Q 039535 398 EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEELPEELKLLV 477 (769)
Q Consensus 398 ~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~ 477 (769)
.+..+++|++|++++|. +..++ .+..+++|++|++++| .+..+|..+..+++|++|++++|+++.+| .+..++
T Consensus 43 ~~~~l~~L~~L~ls~n~-l~~l~--~~~~l~~L~~L~l~~n---~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~ 115 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN-IEKIS--SLSGMENLRILSLGRN---LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLV 115 (198)
T ss_dssp HHHHTTTCSEEECSEEE-ESCCC--CHHHHTTCCEEEEEEE---EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHH
T ss_pred HHhcCCCCCEEECCCCC-Ccccc--ccccCCCCCEEECCCC---CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCC
Confidence 35667788888888776 65666 3777888888888888 66667766666778888888888887776 577778
Q ss_pred CCceeeccCCCcccccch-HHhcCCCcCcEEEeeccCCC
Q 039535 478 NLKCLNLRWTDVLNKIPR-QLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 478 ~L~~L~l~~~~~l~~lp~-~~~~~l~~L~~L~l~~~~~~ 515 (769)
+|++|++++|. +..++. ..+..+++|++|++++|.+.
T Consensus 116 ~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 116 NLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccc
Confidence 88888888776 555443 23677888888888877654
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.02 E-value=2e-11 Score=116.63 Aligned_cols=130 Identities=19% Similarity=0.197 Sum_probs=103.8
Q ss_pred ceEEEeeccc-chhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCccchhhhcCCCCceee
Q 039535 405 LLTLFLDFNR-ELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEELPEELKLLVNLKCLN 483 (769)
Q Consensus 405 L~~L~l~~~~-~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~ 483 (769)
|+.+.+.++. .+..++. .+..+++|++|++++| .+..+| .+..+++|++|++++|.++.+|..+..+++|++|+
T Consensus 25 l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n---~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ 99 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTN---NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELW 99 (198)
T ss_dssp CSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEE---EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEE
T ss_pred hheeEeccccCcHhhhhH-HHhcCCCCCEEECCCC---CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEE
Confidence 4444444332 1344444 4888999999999999 777787 88889999999999999999998888889999999
Q ss_pred ccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCChhhH
Q 039535 484 LRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHAL 556 (769)
Q Consensus 484 l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~ 556 (769)
+++|. +..+|. +..+++|++|++++|.+..+ .....+..+++|+.|++..+.+...
T Consensus 100 L~~N~-l~~l~~--~~~l~~L~~L~l~~N~i~~~--------------~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 100 ISYNQ-IASLSG--IEKLVNLRVLYMSNNKITNW--------------GEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EEEEE-CCCHHH--HHHHHHSSEEEESEEECCCH--------------HHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CcCCc-CCcCCc--cccCCCCCEEECCCCcCCch--------------hHHHHHhcCCCCCEEEecCCccccc
Confidence 99997 667774 88999999999999988732 1235788999999999998876543
No 152
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.00 E-value=8.8e-10 Score=114.49 Aligned_cols=186 Identities=14% Similarity=0.125 Sum_probs=113.8
Q ss_pred CCccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHc
Q 039535 19 TERTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRI 98 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l 98 (769)
.-++++|++..++.+..++..+..+.+.|+|++|+|||++|+.+++.+.. ......++.++.+....... .
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~-~------- 93 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFG-ENWRHNFLELNASDERGINV-I------- 93 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHG-GGHHHHEEEEETTCHHHHHT-T-------
T ss_pred CHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcC-CcccCceEEeeccccCchHH-H-------
Confidence 34679999999999999998776667999999999999999999998621 11001223333221100000 0
Q ss_pred CCCCCCCCCccHHHHHHHHHHH--h-ccceEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCchhh-hcc-cCC
Q 039535 99 GLVDDSWKSKSVEEKALDIFRS--L-REKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVFTTRFFDV-CGS-MEA 171 (769)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~--l-~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iiittr~~~~-~~~-~~~ 171 (769)
.+.+...... + .+++.++|+||++... ....+...+. ....++.+|+|+..... ... ...
T Consensus 94 ------------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le-~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 94 ------------REKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTME-MFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp ------------HHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred ------------HHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHH-hcCCCCeEEEEeCCccccCHHHHhh
Confidence 0111111111 1 2567899999997532 2233332222 22346678877765432 111 112
Q ss_pred CceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHh
Q 039535 172 HRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAM 229 (769)
Q Consensus 172 ~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 229 (769)
...+.+.+++.++..+++...+.......+ .+..+.+++.++|.|..+..+....
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGLELT---EEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTCEEC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 347899999999999999988755442222 3567788899999998765554433
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.93 E-value=2.1e-09 Score=99.77 Aligned_cols=102 Identities=23% Similarity=0.317 Sum_probs=65.6
Q ss_pred eEEEeecccchhcccCcccccCCcccEEEeeccCccccccC-CccccCCCCCCEEeccCCCCCccchh-hhcCCCCceee
Q 039535 406 LTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKL-PLGMSKLGSLELLDISHSSIEELPEE-LKLLVNLKCLN 483 (769)
Q Consensus 406 ~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~ 483 (769)
+.+++++|. +..+|...+ ++|++|++++| .+..+ |..+..+++|++|+|++|+|+.+|.. +..+++|++|+
T Consensus 15 ~~l~~~~n~-l~~iP~~~~---~~L~~L~Ls~N---~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGIP---TDKQRLWLNNN---QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SEEECCSSC-CSSCCSCCC---TTCSEEECCSS---CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cEEEeCCCC-CCccCCCcC---CCCcEEEeCCC---CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence 456666555 556665422 66777777777 45554 34566677777777777777766654 35677777777
Q ss_pred ccCCCcccccchHHhcCCCcCcEEEeeccCCC
Q 039535 484 LRWTDVLNKIPRQLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 484 l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 515 (769)
+++|. +..+|...+..+++|++|++++|.+.
T Consensus 88 L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 88 LNDNH-LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCCCc-cceeCHHHhccccCCCEEEeCCCCcc
Confidence 77765 55666555666777777777776654
No 154
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.92 E-value=4.8e-09 Score=108.48 Aligned_cols=183 Identities=12% Similarity=0.134 Sum_probs=113.4
Q ss_pred CccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcC
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIG 99 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~ 99 (769)
-++++|++..++.+.+++..+..+.+.|+|++|+|||++|+.+++.+.. ......++.++.+.....
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~------------ 82 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMNASDERGI------------ 82 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHT-TCHHHHCEEEETTSTTCT------------
T ss_pred HHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcC-CcccCCeEEEeCccccCh------------
Confidence 3679999999999999987766556899999999999999999998621 110011233333221110
Q ss_pred CCCCCCCCccHHHHHHHHHHH--h-ccceEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCchh-hhcc-cCCC
Q 039535 100 LVDDSWKSKSVEEKALDIFRS--L-REKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVFTTRFFD-VCGS-MEAH 172 (769)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~--l-~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iiittr~~~-~~~~-~~~~ 172 (769)
....+.+...... + .+++.++|+|+++... ....+...+. ....++.+|++|.... +... ....
T Consensus 83 --------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le-~~~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 83 --------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTME-MYSKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp --------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTS-SSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred --------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHH-hcCCCCeEEEEeCChhhcchHHHhhC
Confidence 0111111111111 1 2567899999997532 2333444443 3345667777776543 2111 1234
Q ss_pred ceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHH
Q 039535 173 RTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGR 227 (769)
Q Consensus 173 ~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 227 (769)
..+.+.+++.++..+++...+...+...+ .+..+.+++.++|.+..+.....
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCCCBC---HHHHHHHHHTTTTCHHHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 58999999999999999988765443323 35567888899999886554443
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.91 E-value=2.5e-09 Score=98.98 Aligned_cols=103 Identities=24% Similarity=0.332 Sum_probs=64.9
Q ss_pred ceEEEeecccchhcccCcccccCCcccEEEeeccCccccccC-CccccCCCCCCEEeccCCCCCccchh-hhcCCCCcee
Q 039535 405 LLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKL-PLGMSKLGSLELLDISHSSIEELPEE-LKLLVNLKCL 482 (769)
Q Consensus 405 L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L 482 (769)
.+++++++|. +..+|... .++|++|++++| .+..+ |..+..+++|++|++++|+|+.+|.. +..+++|++|
T Consensus 11 ~~~l~~s~n~-l~~ip~~~---~~~l~~L~L~~N---~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 11 GTTVDCSGKS-LASVPTGI---PTTTQVLYLYDN---QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp TTEEECTTSC-CSSCCSCC---CTTCSEEECCSS---CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEEeCCCC-cCccCccC---CCCCcEEEcCCC---cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence 3566666555 55566542 266677777776 55555 34466667777777777777766554 4566777777
Q ss_pred eccCCCcccccchHHhcCCCcCcEEEeeccCCC
Q 039535 483 NLRWTDVLNKIPRQLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 483 ~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 515 (769)
++++|. +..+|+..+..+++|++|++++|.+.
T Consensus 84 ~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 84 SLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 777765 55565554666777777777776654
No 156
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.90 E-value=1.2e-08 Score=107.97 Aligned_cols=196 Identities=14% Similarity=0.088 Sum_probs=111.5
Q ss_pred CccccchHHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHc
Q 039535 20 ERTLVGLQSQLEQVWRCLIEES-AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRI 98 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l 98 (769)
-+++|||+..++.+..++..++ .+.+.|+|++|+|||++|+.+++.... ..... ...+.. ......+....
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~-~~~~~---~~~~~~----~~~~~~~~~~~ 86 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC-ETGIT---ATPCGV----CDNCREIEQGR 86 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSC-TTCSC---SSCCSS----SHHHHHHHTSC
T ss_pred hhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCC-CCCCC---CCCCcc----cHHHHHHhccC
Confidence 4679999999999999997654 457889999999999999999988721 11000 000000 00011111000
Q ss_pred C-----CC-CCCCCCccHHHHHHHHHHH-hccceEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCchh-hhc-
Q 039535 99 G-----LV-DDSWKSKSVEEKALDIFRS-LREKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVFTTRFFD-VCG- 167 (769)
Q Consensus 99 ~-----~~-~~~~~~~~~~~~~~~l~~~-l~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iiittr~~~-~~~- 167 (769)
. .. ..........+....+... ..+++.++|+||++... ....+...+. .......+|++|.... +..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le-~~~~~~~~Il~~~~~~~l~~~ 165 (373)
T 1jr3_A 87 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE-EPPEHVKFLLATTDPQKLPVT 165 (373)
T ss_dssp CSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHH-SCCSSEEEEEEESCGGGSCHH
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHh-cCCCceEEEEEeCChHhCcHH
Confidence 0 00 0000111222222221111 13467899999996532 2333333332 2234566666665432 211
Q ss_pred ccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHH
Q 039535 168 SMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGR 227 (769)
Q Consensus 168 ~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 227 (769)
.......+.+.+++.++..+++.+.+...+...+ .+.+..+++.++|.|..+..+..
T Consensus 166 l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~---~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 166 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHCCCCHHHHHHHHH
Confidence 1123468999999999999999987754332222 35567899999999998776654
No 157
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.90 E-value=4.1e-09 Score=109.39 Aligned_cols=215 Identities=14% Similarity=0.120 Sum_probs=112.3
Q ss_pred CcceeEEEEeecccc--------------------ccC--CCCC--------CCCceEEEeecccchhcccCcccccCCc
Q 039535 380 WENVRRLSLMQNQIK--------------------VLS--EVPT--------CPHLLTLFLDFNRELMMIAGGYFQFMPS 429 (769)
Q Consensus 380 ~~~l~~l~l~~~~~~--------------------~~~--~~~~--------~~~L~~L~l~~~~~~~~i~~~~~~~l~~ 429 (769)
+++|+.|+|++|.+. .++ .|.+ |++|+.|.+.. .+..++..+|.+|++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcc
Confidence 457888888888776 111 2345 66777777764 366666666777777
Q ss_pred ccEEEeeccCccccccCC-ccccCCCCCCEEeccCCC----CCccch-hhhcCCCCc-----------------------
Q 039535 430 LKVLKISNIGYFNVLKLP-LGMSKLGSLELLDISHSS----IEELPE-ELKLLVNLK----------------------- 480 (769)
Q Consensus 430 L~~L~l~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~----i~~lp~-~~~~l~~L~----------------------- 480 (769)
|+.|++++| .+..++ ..+..+.++.++.+.... ...+.. .+..+.+|+
T Consensus 126 L~~l~l~~n---~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~ 202 (329)
T 3sb4_A 126 LKICQIRKK---TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPR 202 (329)
T ss_dssp CCEEEBCCS---SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGG
T ss_pred cceEEcCCC---CccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcc
Confidence 777777766 333333 334445555555444311 011100 011222222
Q ss_pred ---eeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCChhhHH
Q 039535 481 ---CLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQ 557 (769)
Q Consensus 481 ---~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~ 557 (769)
.+.+.++-....+. .+...+++|+.+++.+|.+..+ ....+..+.+|+.+.+..+
T Consensus 203 ~~~~l~~~~~l~~~~~~-~l~~~~~~L~~l~L~~n~i~~I---------------~~~aF~~~~~L~~l~l~~n------ 260 (329)
T 3sb4_A 203 DINFLTIEGKLDNADFK-LIRDYMPNLVSLDISKTNATTI---------------PDFTFAQKKYLLKIKLPHN------ 260 (329)
T ss_dssp GCSEEEEEECCCHHHHH-HHHHHCTTCCEEECTTBCCCEE---------------CTTTTTTCTTCCEEECCTT------
T ss_pred ccceEEEeeeecHHHHH-HHHHhcCCCeEEECCCCCccee---------------cHhhhhCCCCCCEEECCcc------
Confidence 22222211000000 1112377888888887776533 3445677777777766521
Q ss_pred HHHhcccccccceeEEEeccCCCcccccccccccccccc-ceeeccccCcceEeeeeeccccccCCCccccccceEeecC
Q 039535 558 ILLSSNKLKSCIRSLLLFGFRGTKYFIDATAFADLKHLN-ELQIHDCRGLEELKIDYTEIAQKRREPFVFRSLRRVTMVS 636 (769)
Q Consensus 558 ~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~L~~ 636 (769)
++.+ . ..+|.+|++|+ .+++.+ .++.+.-... ..+++|++|++.+
T Consensus 261 -----------i~~I----------~--~~aF~~~~~L~~~l~l~~--~l~~I~~~aF---------~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 261 -----------LKTI----------G--QRVFSNCGRLAGTLELPA--SVTAIEFGAF---------MGCDNLRYVLATG 306 (329)
T ss_dssp -----------CCEE----------C--TTTTTTCTTCCEEEEECT--TCCEECTTTT---------TTCTTEEEEEECS
T ss_pred -----------ccee----------h--HHHhhCChhccEEEEEcc--cceEEchhhh---------hCCccCCEEEeCC
Confidence 1110 0 13667777777 777765 4443322111 2467888888876
Q ss_pred ccccccccc--ccccCCccEEe
Q 039535 637 CHKLKDLTF--LVFAPNLKSIS 656 (769)
Q Consensus 637 ~~~l~~l~~--l~~l~~L~~L~ 656 (769)
+ .++.++. +..+++|+.|.
T Consensus 307 n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 307 D-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp S-CCCEECTTTTCTTCCCCEEE
T ss_pred C-ccCccchhhhcCCcchhhhc
Confidence 6 4666553 66777887765
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.88 E-value=3.5e-08 Score=104.67 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=72.8
Q ss_pred CCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCC-ccccCCCCCCEEeccCCCCCccchhhhcCC
Q 039535 399 VPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLP-LGMSKLGSLELLDISHSSIEELPEELKLLV 477 (769)
Q Consensus 399 ~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~ 477 (769)
|.++ +|+.+.+..+ +..++..+|.++ +|+.+.+.+ .+..++ ..+.+|.+|+.+++++|+++.++.....+.
T Consensus 132 F~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~----~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~ 203 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS----TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYA 203 (401)
T ss_dssp TTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT----TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTC
T ss_pred cccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC----CccEehHHHhhCcccCCeeecCCCcceEechhhEeec
Confidence 4554 6777777644 677777777775 588888775 333443 456778888888888888887776655567
Q ss_pred CCceeeccCCCcccccchHHhcCCCcCcEEEeec
Q 039535 478 NLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFA 511 (769)
Q Consensus 478 ~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~ 511 (769)
+|+.+.+.++ +..++..++.+|.+|+.+.+..
T Consensus 204 ~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 204 GIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCSEEECCTT--CCEECTTTTTTCTTCCCEECCT
T ss_pred ccCEEEeCCc--hheehhhHhhCCCCCCEEecCC
Confidence 8888888754 6677777777888888887764
No 159
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.83 E-value=7.8e-09 Score=95.93 Aligned_cols=105 Identities=17% Similarity=0.264 Sum_probs=83.7
Q ss_pred eEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCcc-ccCCCCCCEEecc
Q 039535 384 RRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLG-MSKLGSLELLDIS 462 (769)
Q Consensus 384 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~-~~~l~~L~~L~l~ 462 (769)
..++++++.+..++.- -.++|++|++++|. +..+++..|.++++|++|+|++| .+..+|.. +..+++|++|+++
T Consensus 15 ~~l~~~~n~l~~iP~~-~~~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N---~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAG-IPTDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSN---KLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCSSCCSC-CCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS---CCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCCccCCC-cCCCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCC---CCCccChhHhCCcchhhEEECC
Confidence 4677777777665531 13789999999887 77787777899999999999999 77777765 4788999999999
Q ss_pred CCCCCccchh-hhcCCCCceeeccCCCcccccc
Q 039535 463 HSSIEELPEE-LKLLVNLKCLNLRWTDVLNKIP 494 (769)
Q Consensus 463 ~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp 494 (769)
+|.|+.+|.. +..+++|++|++++|. +...+
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~ 121 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNP-WDCEC 121 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSC-BCTTB
T ss_pred CCccceeCHHHhccccCCCEEEeCCCC-ccccc
Confidence 9999988775 7889999999999997 44333
No 160
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.80 E-value=1e-08 Score=94.76 Aligned_cols=101 Identities=19% Similarity=0.269 Sum_probs=79.9
Q ss_pred eEEEEeeccccccCCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCcc-ccCCCCCCEEecc
Q 039535 384 RRLSLMQNQIKVLSEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLG-MSKLGSLELLDIS 462 (769)
Q Consensus 384 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~-~~~l~~L~~L~l~ 462 (769)
+.++++++.+..++.- -.++|+.|++++|. +..+++..|..+++|++|++++| .+..+|.. +..+++|++|+++
T Consensus 12 ~~l~~s~n~l~~ip~~-~~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N---~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 12 TTVDCSGKSLASVPTG-IPTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNN---QLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS---CCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCcc-CCCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCC---CcCccChhhccCCCCCCEEECC
Confidence 4677777777665531 14788999999887 77777777888999999999999 66677654 5788999999999
Q ss_pred CCCCCccchh-hhcCCCCceeeccCCCc
Q 039535 463 HSSIEELPEE-LKLLVNLKCLNLRWTDV 489 (769)
Q Consensus 463 ~~~i~~lp~~-~~~l~~L~~L~l~~~~~ 489 (769)
+|+|+.+|.. +..+++|++|++++|..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 9999988764 78889999999999873
No 161
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.79 E-value=1.2e-08 Score=96.81 Aligned_cols=152 Identities=16% Similarity=0.189 Sum_probs=88.5
Q ss_pred CCccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccC----CCCEEEEEEecCCCCHHHHHHHH
Q 039535 19 TERTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRT----NFDFVIWVVVSKDPRLEKIQEDI 94 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----~~~~~~w~~~~~~~~~~~~~~~l 94 (769)
..+.++||+++++++.+++..+..+.+.|+|++|+|||++|+.+++.+..... ....++++++.. +
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---- 89 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L---- 89 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------H----
T ss_pred cccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------H----
Confidence 34679999999999999997766678899999999999999999998732111 123445544311 1
Q ss_pred HHHcCCCCCCCCCccHHHHHHHHHHHh--ccceEEEEEccccccc---------ccccc-cccCCCCCCCCcEEEEEcCc
Q 039535 95 GKRIGLVDDSWKSKSVEEKALDIFRSL--REKRIVLLLDDIWERL---------DLTKV-GVPLPGPKNTTSKVVFTTRF 162 (769)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~l~~~l--~~~~~llvlDd~~~~~---------~~~~~-~~~l~~~~~~~~~iiittr~ 162 (769)
.. .. .........+..+.+.+ .+++.++|+||++... +...+ ...+. .....+|+||..
T Consensus 90 ~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~---~~~~~~i~~~~~ 160 (195)
T 1jbk_A 90 VA---GA---KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA---RGELHCVGATTL 160 (195)
T ss_dssp HT---TT---CSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH---TTSCCEEEEECH
T ss_pred hc---cC---CccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc---cCCeEEEEeCCH
Confidence 10 00 01111222333333333 3567899999997542 11111 11111 123456666655
Q ss_pred hhhh-------cccCCCceEEeecCCHHHHHHHH
Q 039535 163 FDVC-------GSMEAHRTFEVACLSEKDAWELF 189 (769)
Q Consensus 163 ~~~~-------~~~~~~~~~~l~~l~~~e~~~l~ 189 (769)
.... ........+.+.+++.++..+++
T Consensus 161 ~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 161 DEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 4321 11122336889999988877654
No 162
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.75 E-value=6.8e-09 Score=102.48 Aligned_cols=175 Identities=9% Similarity=0.051 Sum_probs=103.0
Q ss_pred Cccccch---HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHH
Q 039535 20 ERTLVGL---QSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGK 96 (769)
Q Consensus 20 ~~~~vgR---~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 96 (769)
-++|+|+ +..++.+..+...+..+.+.|+|++|+|||++|+.+++.... ....+.|+++...... +..
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~---~~~~~~~~~~~~~~~~------~~~ 97 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANE---LERRSFYIPLGIHASI------STA 97 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEGGGGGGS------CGG
T ss_pred hhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEEHHHHHHH------HHH
Confidence 3678874 366666666665555678999999999999999999998832 2334566665431100 000
Q ss_pred HcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccccc----cccccccCCCCCCCC-cEEEEEcCchh-h-----
Q 039535 97 RIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERLD----LTKVGVPLPGPKNTT-SKVVFTTRFFD-V----- 165 (769)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~----~~~~~~~l~~~~~~~-~~iiittr~~~-~----- 165 (769)
. .+.+ .++.++|+||++.... ...+...+......+ ..+|+|++... .
T Consensus 98 ~--------------------~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~ 156 (242)
T 3bos_A 98 L--------------------LEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVL 156 (242)
T ss_dssp G--------------------GTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCC
T ss_pred H--------------------HHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhh
Confidence 0 0111 3456899999965321 122221111000112 24666665322 1
Q ss_pred ---hcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHH
Q 039535 166 ---CGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGR 227 (769)
Q Consensus 166 ---~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 227 (769)
...+.....+.+.+++.++..+++...+.......+ .+..+.+++.++|.+..+..+..
T Consensus 157 ~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 157 PDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLP---EDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp HHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCC---HHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHccCCHHHHHHHHH
Confidence 111112267999999999999999988754332233 35667888899998876655543
No 163
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.73 E-value=4.8e-08 Score=102.51 Aligned_cols=194 Identities=12% Similarity=0.151 Sum_probs=110.2
Q ss_pred CccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhc-cCCCCEEEEEEecCCCCHHHHHHHHHHHc
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLES-RTNFDFVIWVVVSKDPRLEKIQEDIGKRI 98 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~l~~~l 98 (769)
-.+++|++..++.+..++..+..+.+.|+|++|+|||++|+.+++.+... .... .+..++.+.......+ +......
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~ 113 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISIV-REKVKNF 113 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHHH-TTHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHHH-HHHHHHH
Confidence 36789999999999999976654558999999999999999999986211 0111 2333333332222222 1111111
Q ss_pred C-CCCCCCCCccHHHHHHHHHHHhccceEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCchh-hhcc-cCCCc
Q 039535 99 G-LVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVFTTRFFD-VCGS-MEAHR 173 (769)
Q Consensus 99 ~-~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iiittr~~~-~~~~-~~~~~ 173 (769)
. ..... .... .....-.+.+-++++|+++... ....+...+. ......++|+++.... +... .....
T Consensus 114 ~~~~~~~-~~~~------~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le-~~~~~~~~il~~~~~~~l~~~l~sR~~ 185 (353)
T 1sxj_D 114 ARLTVSK-PSKH------DLENYPCPPYKIIILDEADSMTADAQSALRRTME-TYSGVTRFCLICNYVTRIIDPLASQCS 185 (353)
T ss_dssp HHSCCCC-CCTT------HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHHHSE
T ss_pred hhhcccc-cchh------hcccCCCCCceEEEEECCCccCHHHHHHHHHHHH-hcCCCceEEEEeCchhhCcchhhccCc
Confidence 0 00000 0000 0001112355799999996532 1222222222 1223456666664432 2111 11234
Q ss_pred eEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 174 TFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 174 ~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
.+.+.+++.++..+++...+.......+ ++..+.|++.++|.|..+..+.
T Consensus 186 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 186 KFRFKALDASNAIDRLRFISEQENVKCD---DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHTSSCHHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 7899999999999999988755442333 3567789999999998654443
No 164
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.72 E-value=1.5e-07 Score=100.60 Aligned_cols=179 Identities=16% Similarity=0.104 Sum_probs=107.1
Q ss_pred CCccccchHHHH---HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHH
Q 039535 19 TERTLVGLQSQL---EQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIG 95 (769)
Q Consensus 19 ~~~~~vgR~~~~---~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 95 (769)
.-.++||++..+ ..+...+..+..+.+.|+|++|+|||++|+.+++.. ... ++.++.........+.
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~-----f~~l~a~~~~~~~ir~-- 93 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NAD-----VERISAVTSGVKEIRE-- 93 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCE-----EEEEETTTCCHHHHHH--
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCC-----eEEEEeccCCHHHHHH--
Confidence 446799999999 778888877777789999999999999999999987 221 2222221111111111
Q ss_pred HHcCCCCCCCCCccHHHHHHHHHH-HhccceEEEEEcccccc--cccccccccCCCCCCCCcEEEE-EcCchhh---hcc
Q 039535 96 KRIGLVDDSWKSKSVEEKALDIFR-SLREKRIVLLLDDIWER--LDLTKVGVPLPGPKNTTSKVVF-TTRFFDV---CGS 168 (769)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~llvlDd~~~~--~~~~~~~~~l~~~~~~~~~iii-ttr~~~~---~~~ 168 (769)
.+..... ...+++.++++|+++.. .....+...+. . ....+|. ||.+... ...
T Consensus 94 -----------------~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le-~--~~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 94 -----------------AIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIE-D--GTITFIGATTENPSFELNSAL 153 (447)
T ss_dssp -----------------HHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHH-T--TSCEEEEEESSCGGGSSCHHH
T ss_pred -----------------HHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHh-c--CceEEEecCCCCcccccCHHH
Confidence 1111111 12456889999999653 22333433333 1 2233443 5444321 111
Q ss_pred cCCCceEEeecCCHHHHHHHHHHHhcccc--C--CCchhHHHHHHHHHHHhCCcchHHHHHHH
Q 039535 169 MEAHRTFEVACLSEKDAWELFQEKVGEET--L--KSDHDIAELAQTVAKKCGGLPLALVTIGR 227 (769)
Q Consensus 169 ~~~~~~~~l~~l~~~e~~~l~~~~~~~~~--~--~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 227 (769)
......+.+.+++.++..+++.+.+.... . ......++..+.+++.++|.+..+..+..
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le 216 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE 216 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 23345789999999999999998875411 0 01112345677888889998876655543
No 165
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.71 E-value=1.1e-07 Score=96.33 Aligned_cols=201 Identities=22% Similarity=0.240 Sum_probs=114.7
Q ss_pred CCccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCC
Q 039535 19 TERTLVGLQSQLEQVWRCLIE-------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDP 85 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~ 85 (769)
..++++|.+..++++.+.+.. ...+.+.|+|++|+|||++|+.+++.. .. ..+.+....-
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~---~~~~v~~~~~- 87 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NA---TFIRVVGSEL- 87 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TC---EEEEEEGGGG-
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CC---CEEEEehHHH-
Confidence 346799999999999888742 345678999999999999999999887 21 2233332211
Q ss_pred CHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEccccccc----------------ccccccccCCC
Q 039535 86 RLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERL----------------DLTKVGVPLPG 148 (769)
Q Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~----------------~~~~~~~~l~~ 148 (769)
.. . ...........+.... ...+.++++||++... .+..+...+..
T Consensus 88 -------------~~---~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 150 (285)
T 3h4m_A 88 -------------VK---K-FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG 150 (285)
T ss_dssp -------------CC---C-STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHT
T ss_pred -------------HH---h-ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhC
Confidence 00 0 1111222233333333 4456899999996421 11111111110
Q ss_pred -CCCCCcEEEEEcCchhhh-----cccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCC-cchH
Q 039535 149 -PKNTTSKVVFTTRFFDVC-----GSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGG-LPLA 221 (769)
Q Consensus 149 -~~~~~~~iiittr~~~~~-----~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Pla 221 (769)
....+..||.||...... ........+.++..+.++..+++...+.......+.. ...++..+.| .|..
T Consensus 151 ~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~ 226 (285)
T 3h4m_A 151 FDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAE 226 (285)
T ss_dssp TCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHH
T ss_pred CCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHH
Confidence 122356777777754332 1112234789999999999999998876544322222 3456677766 5545
Q ss_pred HHHHHHHh------cCC--CCHHHHHHHHHHHhc
Q 039535 222 LVTIGRAM------ASK--KTAEEWRHAIEELGR 247 (769)
Q Consensus 222 i~~~~~~l------~~~--~~~~~~~~~l~~l~~ 247 (769)
+..+.... +.. -+.+++..+++....
T Consensus 227 i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 227 LKAICTEAGMNAIRELRDYVTMDDFRKAVEKIME 260 (285)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHh
Confidence 55443221 111 256666666655543
No 166
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.70 E-value=1.3e-07 Score=104.06 Aligned_cols=188 Identities=12% Similarity=0.025 Sum_probs=107.6
Q ss_pred CccccchHHHHHHHHHHhhc-----------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEec
Q 039535 20 ERTLVGLQSQLEQVWRCLIE-----------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVS 82 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~-----------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~ 82 (769)
-.+++|++..++++.+++.. +..+.+.|+|++|+|||++|+.+++.. . ..++.++++
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-----~-~~~i~in~s 111 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-----G-YDILEQNAS 111 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-----T-CEEEEECTT
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-----C-CCEEEEeCC
Confidence 36799999999999999864 124689999999999999999999987 1 234445544
Q ss_pred CCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHH--HHHhccceEEEEEcccccccc-----cccccccCCCCCCCCcE
Q 039535 83 KDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDI--FRSLREKRIVLLLDDIWERLD-----LTKVGVPLPGPKNTTSK 155 (769)
Q Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l--~~~l~~~~~llvlDd~~~~~~-----~~~~~~~l~~~~~~~~~ 155 (769)
...... .....+........ ........ .....+++.+||+|+++.... +..+...+. . .....
T Consensus 112 ~~~~~~-~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~-~-~~~~i 182 (516)
T 1sxj_A 112 DVRSKT-LLNAGVKNALDNMS------VVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR-K-TSTPL 182 (516)
T ss_dssp SCCCHH-HHHHTGGGGTTBCC------STTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH-H-CSSCE
T ss_pred CcchHH-HHHHHHHHHhcccc------HHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH-h-cCCCE
Confidence 443333 22222222111000 00000000 001235678999999975421 122222222 1 11223
Q ss_pred EEEEcCch--hhhcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcch-HHHHH
Q 039535 156 VVFTTRFF--DVCGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPL-ALVTI 225 (769)
Q Consensus 156 iiittr~~--~~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~ 225 (769)
|++++... .+.........+.+.+++.++..+++...+.......++ +....|++.++|.+. ++..+
T Consensus 183 Ili~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 183 ILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHH
T ss_pred EEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHH
Confidence 44443321 122222345679999999999999998877554433333 346688888988554 44444
No 167
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.68 E-value=1.3e-07 Score=100.35 Aligned_cols=142 Identities=13% Similarity=0.193 Sum_probs=107.4
Q ss_pred ceeEEEEeeccccccC--CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCEE
Q 039535 382 NVRRLSLMQNQIKVLS--EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELL 459 (769)
Q Consensus 382 ~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L 459 (769)
+++.+.+..+ +..+. .|.++ +|+.+.+.. .+..++..+|.+|++|+.+++.+| .+..++...-.+.+|+.+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n---~l~~I~~~aF~~~~L~~l 208 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT---KITKLPASTFVYAGIEEV 208 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTS---CCSEECTTTTTTCCCSEE
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeeecCCC---cceEechhhEeecccCEE
Confidence 6888887655 54443 35664 699999984 478899999999999999999998 777777655557899999
Q ss_pred eccCCCCCccchh-hhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhh
Q 039535 460 DISHSSIEELPEE-LKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELL 538 (769)
Q Consensus 460 ~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 538 (769)
.+..+ ++.++.. +..+++|+.+++.++ +..++..++.+ .+|+.+.+.. ... ......+.
T Consensus 209 ~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~-~i~---------------~I~~~aF~ 268 (401)
T 4fdw_A 209 LLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN-GVT---------------NIASRAFY 268 (401)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET-TCC---------------EECTTTTT
T ss_pred EeCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCC-Ccc---------------EEChhHhh
Confidence 99854 7777654 778999999999875 67888777777 7899999843 332 22345567
Q ss_pred cCCCceEEEEEe
Q 039535 539 GLKYLEVLELTL 550 (769)
Q Consensus 539 ~l~~L~~l~l~~ 550 (769)
.+++|+.+.+..
T Consensus 269 ~c~~L~~l~l~~ 280 (401)
T 4fdw_A 269 YCPELAEVTTYG 280 (401)
T ss_dssp TCTTCCEEEEES
T ss_pred CCCCCCEEEeCC
Confidence 777777777664
No 168
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.64 E-value=1.2e-06 Score=87.96 Aligned_cols=167 Identities=17% Similarity=0.133 Sum_probs=91.4
Q ss_pred ccccchHHHHHHHHHH-------hh---cCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHH
Q 039535 21 RTLVGLQSQLEQVWRC-------LI---EESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKI 90 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~-------l~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 90 (769)
..++|+...++++... +. ....+.+.|+|++|+|||++|+.+++.. .. .. +.++...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~--~~-~~i~~~~------- 99 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NF--PF-IKICSPD------- 99 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TC--SE-EEEECGG-------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CC--CE-EEEeCHH-------
Confidence 4688888887777763 22 2345679999999999999999999986 22 22 2222221
Q ss_pred HHHHHHHcCCCCCCCCCccHHHHHHHHHHH-hccceEEEEEcccccc-----------cc-cccccccCCC--CCCCCcE
Q 039535 91 QEDIGKRIGLVDDSWKSKSVEEKALDIFRS-LREKRIVLLLDDIWER-----------LD-LTKVGVPLPG--PKNTTSK 155 (769)
Q Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~llvlDd~~~~-----------~~-~~~~~~~l~~--~~~~~~~ 155 (769)
.+... ...........+.+. ...++.+|++||++.. .. +..+...+.. .......
T Consensus 100 ------~~~g~----~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 169 (272)
T 1d2n_A 100 ------KMIGF----SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL 169 (272)
T ss_dssp ------GCTTC----CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEE
T ss_pred ------HhcCC----chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEE
Confidence 00000 001111122222222 2456889999999653 00 1122222221 1223445
Q ss_pred EEEEcCchhhhcc---cC-CCceEEeecCCH-HHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCc
Q 039535 156 VVFTTRFFDVCGS---ME-AHRTFEVACLSE-KDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGL 218 (769)
Q Consensus 156 iiittr~~~~~~~---~~-~~~~~~l~~l~~-~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 218 (769)
||.||........ .. -...+.+++++. ++..+++.+... .. .+....+++.+.|.
T Consensus 170 ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~-----~~---~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 170 IIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN-----FK---DKERTTIAQQVKGK 229 (272)
T ss_dssp EEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC-----SC---HHHHHHHHHHHTTS
T ss_pred EEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC-----CC---HHHHHHHHHHhcCC
Confidence 6667766543221 11 245688998888 666666665321 11 34566788888873
No 169
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.62 E-value=1.1e-06 Score=91.42 Aligned_cols=174 Identities=14% Similarity=0.096 Sum_probs=104.5
Q ss_pred CCccccchHHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHH
Q 039535 19 TERTLVGLQSQLEQVWRCLIE-----ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQED 93 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 93 (769)
.-++++|++..++.+..++.. .....|.|+|++|+|||++|+++++.. ... .+.+++........+. .
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~---~~~~~~~~~~~~~~~~-~ 99 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SAN---IKTTAAPMIEKSGDLA-A 99 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCC---EEEEEGGGCCSHHHHH-H
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCC---eEEecchhccchhHHH-H
Confidence 346799999999999998863 334578999999999999999998886 222 2333333222221111 1
Q ss_pred HHHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccccc--cccccccCC-----------------CCCCCCc
Q 039535 94 IGKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERLD--LTKVGVPLP-----------------GPKNTTS 154 (769)
Q Consensus 94 l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~--~~~~~~~l~-----------------~~~~~~~ 154 (769)
++ .. ..+..++++|+++.... ...+...+. ....+..
T Consensus 100 ~~-----------------------~~-~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 100 IL-----------------------TN-LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp HH-----------------------HT-CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred HH-----------------------Hh-ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 11 11 23456899999975311 111100000 0001134
Q ss_pred EEEEEcCchhh-----hcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHH
Q 039535 155 KVVFTTRFFDV-----CGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRA 228 (769)
Q Consensus 155 ~iiittr~~~~-----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 228 (769)
.+|.+|..... ... ....+.+.+++.++..+++.+.+.......+ .+..+.+++.++|.|..+..+...
T Consensus 156 ~~i~atn~~~~l~~~L~~R--~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~~ 229 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRDR--FGMQFRLEFYKDSELALILQKAALKLNKTCE---EKAALEIAKRSRSTPRIALRLLKR 229 (338)
T ss_dssp EEEEEESCGGGSCHHHHTT--CSEEEECCCCCHHHHHHHHHHHHHHTTCEEC---HHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHhh--cCEEeeCCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHCcCHHHHHHHHHH
Confidence 56655554321 222 2367999999999999999888764432222 356678888899999766555443
No 170
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.61 E-value=1.6e-07 Score=99.00 Aligned_cols=196 Identities=13% Similarity=0.086 Sum_probs=104.6
Q ss_pred CccccchHHHHHHH---HHHhhcCCc--eEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC----CCCHHHH
Q 039535 20 ERTLVGLQSQLEQV---WRCLIEESA--GIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK----DPRLEKI 90 (769)
Q Consensus 20 ~~~~vgR~~~~~~l---~~~l~~~~~--~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~----~~~~~~~ 90 (769)
.++|||++..++.+ .+.+..+.. +.+.|+|++|+|||++|+.+++.+ ..... .+.+.... .......
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~-~~~~~~~~~~~~~~~~~~~ 118 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL---GPDTP-FTAIAGSEIFSLEMSKTEA 118 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH---CSSCC-EEEEEGGGGSCSSSCHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh---cccCC-cccccchhhhhcccchhHH
Confidence 45799999997774 444444332 589999999999999999999998 22111 22222211 2223333
Q ss_pred HHHHHHHcCC---------------------C--------CC--CCCCccHHHHHHHHHHHh--ccc----eEEEEEccc
Q 039535 91 QEDIGKRIGL---------------------V--------DD--SWKSKSVEEKALDIFRSL--REK----RIVLLLDDI 133 (769)
Q Consensus 91 ~~~l~~~l~~---------------------~--------~~--~~~~~~~~~~~~~l~~~l--~~~----~~llvlDd~ 133 (769)
+......... . .. ..........+....... .++ +.++++|++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi 198 (368)
T 3uk6_A 119 LTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEV 198 (368)
T ss_dssp HHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESG
T ss_pred HHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhc
Confidence 3333322100 0 00 000112222222222221 222 359999999
Q ss_pred cccc--ccccccccCCCCCCCCcEEEEEcC-c----------------hhhhcccCCCceEEeecCCHHHHHHHHHHHhc
Q 039535 134 WERL--DLTKVGVPLPGPKNTTSKVVFTTR-F----------------FDVCGSMEAHRTFEVACLSEKDAWELFQEKVG 194 (769)
Q Consensus 134 ~~~~--~~~~~~~~l~~~~~~~~~iiittr-~----------------~~~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~ 194 (769)
+... ....+...+. ..... .++++|. . +.+.+ ....+.+++++.++..+++...+.
T Consensus 199 ~~l~~~~~~~L~~~le-~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s---R~~~i~~~~~~~~e~~~il~~~~~ 273 (368)
T 3uk6_A 199 HMLDIESFSFLNRALE-SDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLD---RLLIVSTTPYSEKDTKQILRIRCE 273 (368)
T ss_dssp GGSBHHHHHHHHHHTT-CTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHT---TEEEEEECCCCHHHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHhh-CcCCC-eeeeecccceeeeeccCCCCcccCCHHHHh---hccEEEecCCCHHHHHHHHHHHHH
Confidence 7532 1222222222 22223 3443432 1 11222 234589999999999999998876
Q ss_pred cccCCCchhHHHHHHHHHHHhC-CcchHHHHHHH
Q 039535 195 EETLKSDHDIAELAQTVAKKCG-GLPLALVTIGR 227 (769)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~~~~-G~Plai~~~~~ 227 (769)
......+ .+..+.+++.+. |.|..+..+..
T Consensus 274 ~~~~~~~---~~~l~~l~~~~~~G~~r~~~~ll~ 304 (368)
T 3uk6_A 274 EEDVEMS---EDAYTVLTRIGLETSLRYAIQLIT 304 (368)
T ss_dssp HTTCCBC---HHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HcCCCCC---HHHHHHHHHHhcCCCHHHHHHHHH
Confidence 5432222 356678888887 77766555443
No 171
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.58 E-value=3.1e-07 Score=97.74 Aligned_cols=77 Identities=22% Similarity=0.209 Sum_probs=46.5
Q ss_pred cccccceEeecCcccccccc--cccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCcccccccccccccccc
Q 039535 625 VFRSLRRVTMVSCHKLKDLT--FLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALKSI 702 (769)
Q Consensus 625 ~~~~L~~L~L~~~~~l~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 702 (769)
.+.+|+++.+.+. ++.+. .+..+.+|+.++|... ++.+ .+ ..+.++.+|+.+.+.. +++.+
T Consensus 295 ~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I---------~~--~aF~~c~~L~~i~lp~--~l~~I 357 (394)
T 4fs7_A 295 GCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL--VEEI---------GK--RSFRGCTSLSNINFPL--SLRKI 357 (394)
T ss_dssp TCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT--CCEE---------CT--TTTTTCTTCCEECCCT--TCCEE
T ss_pred ccccccccccccc--cceechhhhcCCCCCCEEEeCCc--ccEE---------hH--HhccCCCCCCEEEECc--cccEe
Confidence 4677888887654 44443 3556788888887532 3322 11 1345667888888864 36666
Q ss_pred cCC-CCCCCCcceEeec
Q 039535 703 YWK-PLPFTYLKEMVVN 718 (769)
Q Consensus 703 ~~~-~~~~~~L~~L~i~ 718 (769)
... ...|++|+.+.+.
T Consensus 358 ~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 358 GANAFQGCINLKKVELP 374 (394)
T ss_dssp CTTTBTTCTTCCEEEEE
T ss_pred hHHHhhCCCCCCEEEEC
Confidence 543 3356777777764
No 172
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.58 E-value=2.8e-07 Score=98.86 Aligned_cols=185 Identities=16% Similarity=0.119 Sum_probs=105.7
Q ss_pred cccc-chHHH--HHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHH
Q 039535 21 RTLV-GLQSQ--LEQVWRCLIEES-AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGK 96 (769)
Q Consensus 21 ~~~v-gR~~~--~~~l~~~l~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 96 (769)
++|| |.... ...+.+.....+ ...++|+|++|+||||||+.+++.... ......+++++.. .+...+..
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~-~~~~~~v~~v~~~------~~~~~~~~ 177 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITSE------KFLNDLVD 177 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHH-HCCSSCEEEEEHH------HHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeHH------HHHHHHHH
Confidence 5676 64433 333344333322 567899999999999999999998732 2112245555532 23334443
Q ss_pred HcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccccc----cccccccCCCCCCCCcEEEEEcCchh--------
Q 039535 97 RIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERLD----LTKVGVPLPGPKNTTSKVVFTTRFFD-------- 164 (769)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~----~~~~~~~l~~~~~~~~~iiittr~~~-------- 164 (769)
.+... . ...+.+..+.++-++++||++.... .+.+...+......+..||+||....
T Consensus 178 ~~~~~-------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~ 246 (440)
T 2z4s_A 178 SMKEG-------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQD 246 (440)
T ss_dssp HHHTT-------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCH
T ss_pred HHHcc-------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHH
Confidence 33211 1 1123333343567999999964321 12222221101123567777776532
Q ss_pred -hhcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 165 -VCGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 165 -~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
+.+.+.....+.+.+++.++..+++.+.+.......++ +....|++.++|.+..+..+.
T Consensus 247 ~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~L 306 (440)
T 2z4s_A 247 RLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRGAI 306 (440)
T ss_dssp HHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHHH
T ss_pred HHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHHH
Confidence 12223333578999999999999998887543322332 346678888999887555443
No 173
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.57 E-value=7.7e-08 Score=100.92 Aligned_cols=197 Identities=9% Similarity=0.106 Sum_probs=104.6
Q ss_pred CccccchHHHHHHHHHHh-hcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCC---CCE--------------------
Q 039535 20 ERTLVGLQSQLEQVWRCL-IEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTN---FDF-------------------- 75 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~---~~~-------------------- 75 (769)
-++++|++..++.+..++ ..++.+.+.|+|++|+||||+|+.++..+...... ++.
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 92 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPY 92 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSS
T ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccc
Confidence 367899999999999998 65554448999999999999999999865111100 000
Q ss_pred EEEEEecCCC-CHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEccccccc--ccccccccCCCCCCC
Q 039535 76 VIWVVVSKDP-RLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERL--DLTKVGVPLPGPKNT 152 (769)
Q Consensus 76 ~~w~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~ 152 (769)
.+.+...... ......+.++..+....+ ..... . ...+.+++-++|+|+++... ....+...+. ....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~-~-ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le-~~~~ 163 (354)
T 1sxj_E 93 HLEITPSDMGNNDRIVIQELLKEVAQMEQ------VDFQD-S-KDGLAHRYKCVIINEANSLTKDAQAALRRTME-KYSK 163 (354)
T ss_dssp EEEECCC----CCHHHHHHHHHHHTTTTC--------------------CCEEEEEECTTSSCHHHHHHHHHHHH-HSTT
T ss_pred eEEecHhhcCCcchHHHHHHHHHHHHhcc------ccccc-c-ccccCCCCeEEEEeCccccCHHHHHHHHHHHH-hhcC
Confidence 0111100000 000011111111110000 00000 0 00013366799999996531 1122222221 1123
Q ss_pred CcEEEEEcCchh-hhc-ccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHH
Q 039535 153 TSKVVFTTRFFD-VCG-SMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGR 227 (769)
Q Consensus 153 ~~~iiittr~~~-~~~-~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 227 (769)
+..+|++|.... +.. .......+++.+++.++..+++...+...+...+. .+.+..|++.++|.+..+..+..
T Consensus 164 ~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 164 NIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET--KDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp TEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC--SHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHcCCCHHHHHHHHH
Confidence 567777776532 211 11234689999999999999999887544322220 24567888899998876555543
No 174
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.56 E-value=2.2e-06 Score=89.39 Aligned_cols=180 Identities=14% Similarity=0.083 Sum_probs=105.6
Q ss_pred ccccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHH
Q 039535 21 RTLVGLQSQLEQVWRCLIE------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLE 88 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 88 (769)
++++|++..++.+.+.+.. ...+.+.|+|++|+|||++|+.++... . ...+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~---~~~~~i~~~~l~~-- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---G---ATFFSISASSLTS-- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---T---CEEEEEEGGGGCC--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---C---CeEEEEehHHhhc--
Confidence 6789999999999888742 345678999999999999999999886 1 1234444432100
Q ss_pred HHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEcccccccc-------------cccccccCC---CCCC
Q 039535 89 KIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERLD-------------LTKVGVPLP---GPKN 151 (769)
Q Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~~-------------~~~~~~~l~---~~~~ 151 (769)
. ...........+.... ..++.+|+||+++.... ...+...+. ....
T Consensus 156 ------------~----~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 156 ------------K----WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp ------------S----STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred ------------c----ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 0111122233333333 34678999999964210 111211111 0122
Q ss_pred CCcEEEEEcCchhhh-cc-c-CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCC-cchHHHHHHH
Q 039535 152 TTSKVVFTTRFFDVC-GS-M-EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGG-LPLALVTIGR 227 (769)
Q Consensus 152 ~~~~iiittr~~~~~-~~-~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~~~~ 227 (769)
.+..||.||...... .. . .-...+.+...+.++..+++...+........ .+....+++.+.| .+..+..++.
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS---EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345566666543221 11 0 22346889999999999999887754332222 3456788888888 4555655554
No 175
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.55 E-value=4.2e-06 Score=85.79 Aligned_cols=180 Identities=18% Similarity=0.184 Sum_probs=105.8
Q ss_pred ccccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHH
Q 039535 21 RTLVGLQSQLEQVWRCLIE------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLE 88 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 88 (769)
++++|.+..++.+.+.+.. ...+.+.|+|++|+|||++|+++++.. .. ...+.++.+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~--~~~~~i~~~~l~--- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---NN--STFFSISSSDLV--- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT---TS--CEEEEEECCSSC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc---CC--CcEEEEEhHHHH---
Confidence 6789999999998877631 123578899999999999999999986 11 123333332210
Q ss_pred HHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEcccccccc-------------cccccccCCC--CCCC
Q 039535 89 KIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERLD-------------LTKVGVPLPG--PKNT 152 (769)
Q Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~~-------------~~~~~~~l~~--~~~~ 152 (769)
. ...... +.....+++.. ..++.+|++|+++.... ...+...+.+ ....
T Consensus 84 ----------~----~~~g~~-~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 84 ----------S----KWLGES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp ----------C----SSCCSC-HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred ----------h----hhhhHH-HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 0 001111 22333333333 35678999999975311 0111111110 1234
Q ss_pred CcEEEEEcCchhh-----hcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCc-chHHHHHH
Q 039535 153 TSKVVFTTRFFDV-----CGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGL-PLALVTIG 226 (769)
Q Consensus 153 ~~~iiittr~~~~-----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~~ 226 (769)
+..||.||..+.. .+ .-...+.++..+.++..+++..++........ ......|++.+.|. +..+..++
T Consensus 149 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT---EADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC---HHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 5556666654322 22 23357889999999999999988765442222 34567888888886 44565555
Q ss_pred HH
Q 039535 227 RA 228 (769)
Q Consensus 227 ~~ 228 (769)
+.
T Consensus 224 ~~ 225 (322)
T 1xwi_A 224 RD 225 (322)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 176
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.53 E-value=1e-06 Score=90.63 Aligned_cols=180 Identities=16% Similarity=0.123 Sum_probs=107.2
Q ss_pred CccccchHHHHHHHHHHhh----------c--CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 20 ERTLVGLQSQLEQVWRCLI----------E--ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~----------~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
-++++|.+..++.+.+++. . ...+.+.|+|++|+|||++|+++++.. .. ..+.++.+
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~v~~~----- 85 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NS---TFFSVSSS----- 85 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TC---EEEEEEHH-----
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CC---CEEEEchH-----
Confidence 3679999999999998872 1 123568999999999999999999987 22 22333321
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEcccccccc-------------ccccc---ccCCCCC
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERLD-------------LTKVG---VPLPGPK 150 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~~-------------~~~~~---~~l~~~~ 150 (769)
.+ ... .....+.....+++.. ..++.+|+||+++.... ...+. ..+. ..
T Consensus 86 -~l----~~~--------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~ 151 (322)
T 3eie_A 86 -DL----VSK--------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG-ND 151 (322)
T ss_dssp -HH----HTT--------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG-TS
T ss_pred -HH----hhc--------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc-cc
Confidence 11 110 1112233334444433 34568999999974311 11111 1111 12
Q ss_pred CCCcEEEEEcCchhhhcc---cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCC-cchHHHHHH
Q 039535 151 NTTSKVVFTTRFFDVCGS---MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGG-LPLALVTIG 226 (769)
Q Consensus 151 ~~~~~iiittr~~~~~~~---~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~~~ 226 (769)
..+..||.||..+..... -.-...+.++..+.++..+++...+........ ......+++.+.| .+..|..+.
T Consensus 152 ~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 152 SQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT---KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC---HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred CCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 345566667665432110 022356889999999999999998865442222 2446678888877 455555554
Q ss_pred H
Q 039535 227 R 227 (769)
Q Consensus 227 ~ 227 (769)
.
T Consensus 229 ~ 229 (322)
T 3eie_A 229 K 229 (322)
T ss_dssp H
T ss_pred H
Confidence 3
No 177
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.52 E-value=4.6e-07 Score=92.93 Aligned_cols=152 Identities=13% Similarity=0.173 Sum_probs=88.4
Q ss_pred cccchHHHHHHHHHHhh---------------cCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCC--EEEEEEecCC
Q 039535 22 TLVGLQSQLEQVWRCLI---------------EESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFD--FVIWVVVSKD 84 (769)
Q Consensus 22 ~~vgR~~~~~~l~~~l~---------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~--~~~w~~~~~~ 84 (769)
+++|.+..++.+.+.+. ......+.|+|++|+|||++|+.+++.+.. ..... .++.++...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~-~~~~~~~~~~~~~~~~- 109 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR-LGYVRKGHLVSVTRDD- 109 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH-TTSSSSCCEEEECGGG-
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh-cCCcCCCcEEEEcHHH-
Confidence 68999999999887653 123447899999999999999999988732 11111 223332111
Q ss_pred CCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccc-----------cccccccccCCCCCCCC
Q 039535 85 PRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWER-----------LDLTKVGVPLPGPKNTT 153 (769)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-----------~~~~~~~~~l~~~~~~~ 153 (769)
+.. ...... ......+.+.. ++.++++|+++.. .....+...+. ....+
T Consensus 110 -------------l~~---~~~g~~-~~~~~~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~-~~~~~ 169 (309)
T 3syl_A 110 -------------LVG---QYIGHT-APKTKEVLKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME-NNRDD 169 (309)
T ss_dssp -------------TCC---SSTTCH-HHHHHHHHHHH--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHH-HCTTT
T ss_pred -------------hhh---hccccc-HHHHHHHHHhc--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHh-cCCCC
Confidence 100 001111 11222222222 2359999999733 11222322232 23345
Q ss_pred cEEEEEcCchh----------hhcccCCCceEEeecCCHHHHHHHHHHHhcccc
Q 039535 154 SKVVFTTRFFD----------VCGSMEAHRTFEVACLSEKDAWELFQEKVGEET 197 (769)
Q Consensus 154 ~~iiittr~~~----------~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~ 197 (769)
..||.||.... +.+. ....+.+++++.++..+++...+....
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~~~~ 221 (309)
T 3syl_A 170 LVVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLDDQN 221 (309)
T ss_dssp CEEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHHHTT
T ss_pred EEEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHHHcC
Confidence 67777775432 1122 126799999999999999988876544
No 178
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.52 E-value=1.1e-06 Score=90.78 Aligned_cols=170 Identities=14% Similarity=0.104 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhhhhccC-------------------CCCEEEEEEecCCC
Q 039535 26 LQSQLEQVWRCLIEES-AGIIGLYGMGGVGKTTLLIHINNKFLESRT-------------------NFDFVIWVVVSKDP 85 (769)
Q Consensus 26 R~~~~~~l~~~l~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------~~~~~~w~~~~~~~ 85 (769)
.++..+.+...+.+++ .+.+.++|++|+|||++|+.+++.+..... +++ +.++....
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~-- 83 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEK-- 83 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCT--
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccc--
Confidence 4566777888877655 456899999999999999999998721110 112 22222110
Q ss_pred CHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-----ccceEEEEEccccccc--ccccccccCCCCCCCCcEEEE
Q 039535 86 RLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-----REKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVF 158 (769)
Q Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iii 158 (769)
.......++ ++.+.+.+ .+++-++|+|+++... ....+...+. ....++.+|+
T Consensus 84 ------------------~~~~~~i~~-ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lE-ep~~~~~~Il 143 (334)
T 1a5t_A 84 ------------------GKNTLGVDA-VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLE-EPPAETWFFL 143 (334)
T ss_dssp ------------------TCSSBCHHH-HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHT-SCCTTEEEEE
T ss_pred ------------------cCCCCCHHH-HHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhc-CCCCCeEEEE
Confidence 001112222 22222332 3467899999997542 2223333333 2334566666
Q ss_pred EcCchh-hhcc-cCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHH
Q 039535 159 TTRFFD-VCGS-MEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIG 226 (769)
Q Consensus 159 ttr~~~-~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 226 (769)
+|.+.. +... ......+.+.+++.++..+++.+... .+ .+.+..+++.++|.|..+..+.
T Consensus 144 ~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~-----~~---~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 144 ATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT-----MS---QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC-----CC---HHHHHHHHHHTTTCHHHHHHTT
T ss_pred EeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC-----CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 665543 2221 23456899999999999999988761 12 2456788999999997665443
No 179
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.51 E-value=3.2e-06 Score=89.41 Aligned_cols=181 Identities=13% Similarity=0.091 Sum_probs=102.3
Q ss_pred CccccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 20 ERTLVGLQSQLEQVWRCLIE------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
-++++|++..++.+.+++.. ...+.+.|+|++|+|||++|+.++.+. . ..++.+++..-..
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~---~~~~~v~~~~l~~- 186 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---N---ATFFNISAASLTS- 186 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---T---CEEEEECSCCC---
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---c---CcEEEeeHHHhhc-
Confidence 36789999999999988731 234678999999999999999998886 1 1233333322110
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEcccccccc-------------ccccc---ccCCCCC
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERLD-------------LTKVG---VPLPGPK 150 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~~-------------~~~~~---~~l~~~~ 150 (769)
.. .... ......+++.. ...+.+|+||+++.... ...+. ..+....
T Consensus 187 -~~---------------~g~~-~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 249 (389)
T 3vfd_A 187 -KY---------------VGEG-EKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAG 249 (389)
T ss_dssp ---------------------C-HHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---
T ss_pred -cc---------------cchH-HHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccC
Confidence 00 0001 12222333333 33567999999964310 00111 1111011
Q ss_pred CCCcEEEEEcCchhhhc-c-c-CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcch-HHHHHH
Q 039535 151 NTTSKVVFTTRFFDVCG-S-M-EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPL-ALVTIG 226 (769)
Q Consensus 151 ~~~~~iiittr~~~~~~-~-~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~~ 226 (769)
.....||.||....... . . .-...+.+...+.++..+++...+........ .+....+++.+.|..- ++..+.
T Consensus 250 ~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 250 DDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT---QKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp --CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 23455666665432211 1 1 12246889999999999999988765442222 3456788888888554 555544
Q ss_pred H
Q 039535 227 R 227 (769)
Q Consensus 227 ~ 227 (769)
.
T Consensus 327 ~ 327 (389)
T 3vfd_A 327 K 327 (389)
T ss_dssp H
T ss_pred H
Confidence 3
No 180
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.50 E-value=6.2e-07 Score=92.61 Aligned_cols=177 Identities=12% Similarity=0.059 Sum_probs=101.0
Q ss_pred CCccccchHHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 039535 19 TERTLVGLQSQLEQVWRCLIEES-AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKR 97 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 97 (769)
.-++++|++..++.+.+++..+. ..++.++|++|+|||++|+.+++.. . ..++.++.+.. .. ...+..+..
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~~-~~-~~i~~~~~~ 95 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSDC-KI-DFVRGPLTN 95 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTTC-CH-HHHHTHHHH
T ss_pred CHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEccccc-CH-HHHHHHHHH
Confidence 34679999999999999998654 3567788889999999999999887 1 23444553332 11 111111111
Q ss_pred cCCCCCCCCCccHHHHHHHHHHH--hccceEEEEEccccccc---ccccccccCCCCCCCCcEEEEEcCchhh-hcc-cC
Q 039535 98 IGLVDDSWKSKSVEEKALDIFRS--LREKRIVLLLDDIWERL---DLTKVGVPLPGPKNTTSKVVFTTRFFDV-CGS-ME 170 (769)
Q Consensus 98 l~~~~~~~~~~~~~~~~~~l~~~--l~~~~~llvlDd~~~~~---~~~~~~~~l~~~~~~~~~iiittr~~~~-~~~-~~ 170 (769)
.... ..+++.++++||++... ....+...+. .......+|+||..... ... ..
T Consensus 96 -------------------~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le-~~~~~~~iI~~~n~~~~l~~~l~s 155 (324)
T 3u61_B 96 -------------------FASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFME-AYSSNCSIIITANNIDGIIKPLQS 155 (324)
T ss_dssp -------------------HHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHH-HHGGGCEEEEEESSGGGSCTTHHH
T ss_pred -------------------HHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHH-hCCCCcEEEEEeCCccccCHHHHh
Confidence 1111 12367899999997543 2222222222 11234567777765431 111 11
Q ss_pred CCceEEeecCCHHHHHHHHHH-------HhccccCCCchhHHHHHHHHHHHhCCcchHHHHH
Q 039535 171 AHRTFEVACLSEKDAWELFQE-------KVGEETLKSDHDIAELAQTVAKKCGGLPLALVTI 225 (769)
Q Consensus 171 ~~~~~~l~~l~~~e~~~l~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 225 (769)
....+.+.+++.++..+++.. .+.......++ .+....+++.++|....+...
T Consensus 156 R~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~~~ 215 (324)
T 3u61_B 156 RCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTIGE 215 (324)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHHHH
T ss_pred hCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHHHH
Confidence 235799999998885444322 22222211111 145667888888877644333
No 181
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.50 E-value=2.3e-06 Score=90.99 Aligned_cols=104 Identities=17% Similarity=0.170 Sum_probs=61.9
Q ss_pred ccccceEeecCcccccccccccccCCccEEeecCChhhhhhhccCccCCcccccCCCCCCCcccccccccccccccccCC
Q 039535 626 FRSLRRVTMVSCHKLKDLTFLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSPFENLQNLDLSYLLALKSIYWK 705 (769)
Q Consensus 626 ~~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 705 (769)
+..++.+...... +.. ..+..+.+|+.+.+.+. ++.+ .+. .+.++.+|+.++|.+ .++.++..
T Consensus 275 ~~~l~~~~~~~~~-i~~-~~F~~~~~L~~i~l~~~--i~~I---------~~~--aF~~c~~L~~i~lp~--~v~~I~~~ 337 (394)
T 4fs7_A 275 CSGLKKVIYGSVI-VPE-KTFYGCSSLTEVKLLDS--VKFI---------GEE--AFESCTSLVSIDLPY--LVEEIGKR 337 (394)
T ss_dssp CTTCCEEEECSSE-ECT-TTTTTCTTCCEEEECTT--CCEE---------CTT--TTTTCTTCCEECCCT--TCCEECTT
T ss_pred ccccceeccCcee-ecc-ccccccccccccccccc--ccee---------chh--hhcCCCCCCEEEeCC--cccEEhHH
Confidence 4555555554431 111 12445677777776532 2222 111 355677899999864 47777643
Q ss_pred -CCCCCCcceEeecCCccCCCcCCCCCc--ccccceEEeccccccc
Q 039535 706 -PLPFTYLKEMVVNGCDQLKKLPLDSSC--AEERKFVIRGEAHWWN 748 (769)
Q Consensus 706 -~~~~~~L~~L~i~~C~~L~~lp~~~~~--~~l~~~~i~~~~~~~~ 748 (769)
...|.+|+.+.+.. +++.++...-. .+|+.+.+...-+.++
T Consensus 338 aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~~~~~~~ 381 (394)
T 4fs7_A 338 SFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPKRLEQYR 381 (394)
T ss_dssp TTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEGGGGGGG
T ss_pred hccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECCCCEEhh
Confidence 44678999998853 37777765533 7888888875554443
No 182
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.50 E-value=2.6e-06 Score=84.86 Aligned_cols=180 Identities=15% Similarity=0.165 Sum_probs=100.3
Q ss_pred ccccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHH
Q 039535 21 RTLVGLQSQLEQVWRCLIE------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLE 88 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 88 (769)
++++|.+..++.+.+.+.. ...+.+.|+|++|+|||++|+.++++. .. ..+.+++..-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~---~~~~~~~~~~~~-- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QV---PFLAMAGAEFVE-- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TC---CEEEEETTTTSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CC---CEEEechHHHHh--
Confidence 5689999988888766431 233568899999999999999999987 22 233343332110
Q ss_pred HHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEccccccc-------------c----cccccccCCC-C
Q 039535 89 KIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERL-------------D----LTKVGVPLPG-P 149 (769)
Q Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~-------------~----~~~~~~~l~~-~ 149 (769)
. ...........+.+.. ...+.++++||++... . +..+...+.. .
T Consensus 78 ---------------~-~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 141 (262)
T 2qz4_A 78 ---------------V-IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG 141 (262)
T ss_dssp ---------------S-STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC
T ss_pred ---------------h-ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC
Confidence 0 0111112222233322 3457899999997531 0 1112111110 1
Q ss_pred CCCCcEEEEEcCchhhh-ccc----CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcch-HHH
Q 039535 150 KNTTSKVVFTTRFFDVC-GSM----EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPL-ALV 223 (769)
Q Consensus 150 ~~~~~~iiittr~~~~~-~~~----~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~ 223 (769)
...+..||.||...... ..+ .-...+.++..+.++..+++...+......... ......+++.+.|.+- .+.
T Consensus 142 ~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~~~l~~~~~g~~~~~l~ 219 (262)
T 2qz4_A 142 TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSS--TFYSQRLAELTPGFSGADIA 219 (262)
T ss_dssp TTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTH--HHHHHHHHHTCTTCCHHHHH
T ss_pred CCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcch--hhHHHHHHHHCCCCCHHHHH
Confidence 12355666666554321 111 223578899999999999998877554422221 2234678888887654 454
Q ss_pred HHH
Q 039535 224 TIG 226 (769)
Q Consensus 224 ~~~ 226 (769)
.+.
T Consensus 220 ~l~ 222 (262)
T 2qz4_A 220 NIC 222 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 183
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.50 E-value=5.9e-06 Score=84.02 Aligned_cols=179 Identities=16% Similarity=0.124 Sum_probs=104.3
Q ss_pred CccccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 20 ERTLVGLQSQLEQVWRCLIE------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
-++++|.+..++.+.+++.. ...+.+.|+|++|+|||++|+.++... . ...+.++++.-..
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~---~~~~~i~~~~l~~- 92 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---S---ATFLNISAASLTS- 92 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---T---CEEEEEESTTTSS-
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---C---CCeEEeeHHHHhh-
Confidence 36799999999999888732 234678999999999999999999987 1 1233344322100
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEccccccccc---------c----cc---cccCCCC-
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERLDL---------T----KV---GVPLPGP- 149 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~~~---------~----~~---~~~l~~~- 149 (769)
. ...........+.... ...+.+|++|+++....- . .+ ....+..
T Consensus 93 ----------------~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 155 (297)
T 3b9p_A 93 ----------------K-YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP 155 (297)
T ss_dssp ----------------S-SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC---
T ss_pred ----------------c-ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC
Confidence 0 0111222333333333 346789999999643110 0 01 1112201
Q ss_pred CCCCcEEEEEcCchhh-----hcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcch-HHH
Q 039535 150 KNTTSKVVFTTRFFDV-----CGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPL-ALV 223 (769)
Q Consensus 150 ~~~~~~iiittr~~~~-----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~ 223 (769)
.+.+..||.||..+.. .+. -...+.++..+.++..+++...+........ .+....+++.+.|.+- .+.
T Consensus 156 ~~~~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~~la~~~~g~~~~~l~ 230 (297)
T 3b9p_A 156 DGDRIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSPLD---TEALRRLAKITDGYSGSDLT 230 (297)
T ss_dssp ---CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCCSC---HHHHHHHHHHTTTCCHHHHH
T ss_pred CCCcEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHH
Confidence 1234566666665422 222 2356888888999988988887754332222 3456788888888875 554
Q ss_pred HHHH
Q 039535 224 TIGR 227 (769)
Q Consensus 224 ~~~~ 227 (769)
.+..
T Consensus 231 ~l~~ 234 (297)
T 3b9p_A 231 ALAK 234 (297)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 184
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.49 E-value=2.2e-07 Score=97.17 Aligned_cols=93 Identities=17% Similarity=0.176 Sum_probs=47.2
Q ss_pred cccccCCCCCCCCceEEEeec-ccchhcccCcccccCCcccEEEeeccCccccccCC-ccccCCCCCCEEeccCCCCCcc
Q 039535 392 QIKVLSEVPTCPHLLTLFLDF-NRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLP-LGMSKLGSLELLDISHSSIEEL 469 (769)
Q Consensus 392 ~~~~~~~~~~~~~L~~L~l~~-~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~l 469 (769)
.+..++.+..+++|+.|+|++ |. +..+++..|..+++|++|+|++| .+..++ ..+..+++|++|+|++|+|+.+
T Consensus 20 ~l~~ip~l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N---~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 95 (347)
T 2ifg_A 20 ALDSLHHLPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKS---GLRFVAPDAFHFTPRLSRLNLSFNALESL 95 (347)
T ss_dssp CCTTTTTSCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSS---CCCEECTTGGGSCSCCCEEECCSSCCSCC
T ss_pred CCCccCCCCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCC---ccceeCHHHhcCCcCCCEEeCCCCcccee
Confidence 343333345555555555554 33 55555444555555555555555 343333 2345555555555555555555
Q ss_pred chhhhcCCCCceeeccCCC
Q 039535 470 PEELKLLVNLKCLNLRWTD 488 (769)
Q Consensus 470 p~~~~~l~~L~~L~l~~~~ 488 (769)
|..+.....|+.|++.+|.
T Consensus 96 ~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 96 SWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSTTTCSCCCCEEECCSSC
T ss_pred CHHHcccCCceEEEeeCCC
Confidence 5443322235555555554
No 185
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.49 E-value=1.4e-08 Score=106.53 Aligned_cols=162 Identities=15% Similarity=0.089 Sum_probs=106.0
Q ss_pred cceeEEEEeeccccccC--C----C-CCCCCceEEEeecccchhccc-CcccccCCcccEEEeeccCcccc--ccCCccc
Q 039535 381 ENVRRLSLMQNQIKVLS--E----V-PTCPHLLTLFLDFNRELMMIA-GGYFQFMPSLKVLKISNIGYFNV--LKLPLGM 450 (769)
Q Consensus 381 ~~l~~l~l~~~~~~~~~--~----~-~~~~~L~~L~l~~~~~~~~i~-~~~~~~l~~L~~L~l~~~~~~~~--~~l~~~~ 450 (769)
+.++.|++++|.+.... . + ...++|++|++++|. +.... ..+...+++|++|+|++|.+... ..+...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46778888888874321 1 1 234789999999887 43222 22344567899999999832111 1122222
Q ss_pred -cCCCCCCEEeccCCCCCc-----cchhhhcCCCCceeeccCCCccccc-----chHHhcCCCcCcEEEeeccCCCcccc
Q 039535 451 -SKLGSLELLDISHSSIEE-----LPEELKLLVNLKCLNLRWTDVLNKI-----PRQLISNLSRVRVLRMFATGYDRFHE 519 (769)
Q Consensus 451 -~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~l~~l-----p~~~~~~l~~L~~L~l~~~~~~~~~~ 519 (769)
...++|++|+|++|.|+. ++..+..+++|++|++++|. ++.. +.. +...++|++|++++|.+....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~g- 227 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDTA- 227 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHHH-
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHHH-
Confidence 346789999999998873 44456778899999999987 4432 222 567788999999998876321
Q ss_pred ccccccccCCccchhhhhhcCCCceEEEEEeCChhhH
Q 039535 520 ASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHAL 556 (769)
Q Consensus 520 ~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~ 556 (769)
...+...+..+++|+.|+++.+.+...
T Consensus 228 ----------~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 228 ----------ALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp ----------HHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred ----------HHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 012445566778899998888876543
No 186
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.49 E-value=5.6e-07 Score=93.53 Aligned_cols=179 Identities=12% Similarity=0.195 Sum_probs=104.1
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCC-EEEEEEecCCCCHHHHHHHHHHHcC
Q 039535 21 RTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFD-FVIWVVVSKDPRLEKIQEDIGKRIG 99 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~l~~~l~ 99 (769)
++++|.+..++.+..++..++.+.+.++|++|+||||+|+.+++.+.. ..+. .+.-++.+.......+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~--~~~~~~~~~~~~~~~~~~~~i--------- 93 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG--KNYSNMVLELNASDDRGIDVV--------- 93 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT--TSHHHHEEEECTTSCCSHHHH---------
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC--CCccceEEEEcCcccccHHHH---------
Confidence 567999999999999998766555899999999999999999998721 1111 1222222111111111
Q ss_pred CCCCCCCCccHHHHHHHHHHH---hccceEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCchh-hhc-ccCCC
Q 039535 100 LVDDSWKSKSVEEKALDIFRS---LREKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVFTTRFFD-VCG-SMEAH 172 (769)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~---l~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iiittr~~~-~~~-~~~~~ 172 (769)
.+.+..+.+. ..+.+-++|+|+++... ....+...+. .....+.+|+++.... +.. .....
T Consensus 94 -----------r~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le-~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 94 -----------RNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIE-RYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp -----------HTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred -----------HHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHh-cCCCCeEEEEEecCccccchhHHhhc
Confidence 1111111111 12346789999996432 1122221121 1123456666665432 111 11234
Q ss_pred ceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHH
Q 039535 173 RTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTI 225 (769)
Q Consensus 173 ~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 225 (769)
..+.+.+++.++..+.+...+.......+ ++..+.+++.++|.+..+..+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~~~~~ 211 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKLKLS---PNAEKALIELSNGDMRRVLNV 211 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHHHHHH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 57899999999999999887744332222 345678888999988754333
No 187
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.48 E-value=2.3e-07 Score=97.04 Aligned_cols=102 Identities=21% Similarity=0.231 Sum_probs=84.7
Q ss_pred EEEeecccchhcccCcccccCCcccEEEeec-cCccccccCC-ccccCCCCCCEEeccCCCCCccch-hhhcCCCCceee
Q 039535 407 TLFLDFNRELMMIAGGYFQFMPSLKVLKISN-IGYFNVLKLP-LGMSKLGSLELLDISHSSIEELPE-ELKLLVNLKCLN 483 (769)
Q Consensus 407 ~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~-~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~ 483 (769)
.++++++..+..+|. +..+++|++|+|++ | .+..+| ..+..+.+|++|+|++|.|+.++. .+..+++|++|+
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n---~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQ---HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCS---SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCC---CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 467776634778887 88899999999996 8 677776 568899999999999999997654 578999999999
Q ss_pred ccCCCcccccchHHhcCCCcCcEEEeeccCCC
Q 039535 484 LRWTDVLNKIPRQLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 484 l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 515 (769)
|++|. +..+|+..+..+. |+.|++.+|.+.
T Consensus 87 l~~N~-l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 87 LSFNA-LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSSC-CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCCCc-cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 99997 7788877566665 999999998865
No 188
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.46 E-value=6.9e-07 Score=83.85 Aligned_cols=48 Identities=21% Similarity=0.292 Sum_probs=43.0
Q ss_pred CCccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 19 TERTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++||+.+++.+.+++.....+.+.|+|++|+|||++|+.+++..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred ccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999977666788999999999999999999987
No 189
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.44 E-value=3.5e-06 Score=87.70 Aligned_cols=179 Identities=17% Similarity=0.151 Sum_probs=104.6
Q ss_pred CccccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 20 ERTLVGLQSQLEQVWRCLIE------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
-++++|.+..++.+.+++.. ...+.|.|+|++|+|||++|+++++.. .. ..+.++..
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~---~~~~v~~~----- 118 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NS---TFFSVSSS----- 118 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TC---EEEEEEHH-----
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CC---CEEEeeHH-----
Confidence 36789999999999888631 123458899999999999999999987 21 22333321
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEcccccccc-------------cccccccCCC--CCC
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERLD-------------LTKVGVPLPG--PKN 151 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~~-------------~~~~~~~l~~--~~~ 151 (769)
. +.... ... .+.....+++.. ...+.+|+||+++.... ...+...+.+ ...
T Consensus 119 -~----l~~~~-------~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~ 185 (355)
T 2qp9_X 119 -D----LVSKW-------MGE-SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 185 (355)
T ss_dssp -H----HHSCC-----------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---
T ss_pred -H----Hhhhh-------cch-HHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccC
Confidence 1 11111 011 122233333333 34678999999975321 1111111110 122
Q ss_pred CCcEEEEEcCchhh-----hcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCC-cchHHHHH
Q 039535 152 TTSKVVFTTRFFDV-----CGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGG-LPLALVTI 225 (769)
Q Consensus 152 ~~~~iiittr~~~~-----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~~ 225 (769)
.+..||.||..+.. .. .-...+.++..+.++..+++..++........ ......|++.+.| .+..|..+
T Consensus 186 ~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~---~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 186 QGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLT---KEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC---HHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 35566666654422 22 23457889999999999999988865442222 3456678888888 45456555
Q ss_pred HH
Q 039535 226 GR 227 (769)
Q Consensus 226 ~~ 227 (769)
+.
T Consensus 261 ~~ 262 (355)
T 2qp9_X 261 VK 262 (355)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 190
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.43 E-value=1.1e-06 Score=90.70 Aligned_cols=179 Identities=16% Similarity=0.133 Sum_probs=98.7
Q ss_pred Ccccc-ch--HHHHHHHHHHhhcC--CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHH
Q 039535 20 ERTLV-GL--QSQLEQVWRCLIEE--SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDI 94 (769)
Q Consensus 20 ~~~~v-gR--~~~~~~l~~~l~~~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 94 (769)
.++|| |. ......+..++... ....+.|+|++|+|||+||+.+++..... ...++++++ ..+...+
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~------~~~~~~~ 80 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSA------DDFAQAM 80 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEH------HHHHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEH------HHHHHHH
Confidence 45676 53 33344455554433 34578899999999999999999987322 223455543 2233333
Q ss_pred HHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccccc----cccccccCCCCCCCCcEEEEEcCch-h-----
Q 039535 95 GKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERLD----LTKVGVPLPGPKNTTSKVVFTTRFF-D----- 164 (769)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~----~~~~~~~l~~~~~~~~~iiittr~~-~----- 164 (769)
...+.. .. ...+.+... ++.++++||++.... ...+...+......+..+|+|+... .
T Consensus 81 ~~~~~~-------~~----~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l 148 (324)
T 1l8q_A 81 VEHLKK-------GT----INEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGV 148 (324)
T ss_dssp HHHHHH-------TC----HHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTS
T ss_pred HHHHHc-------Cc----HHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHh
Confidence 333211 01 111222222 356999999965321 1122211110112344667666532 2
Q ss_pred ---hhcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHH
Q 039535 165 ---VCGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVT 224 (769)
Q Consensus 165 ---~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 224 (769)
+.+.+.....+.+++ +.++..+++...+.......+ .+..+.+++.+ |....+..
T Consensus 149 ~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~---~~~l~~l~~~~-g~~r~l~~ 206 (324)
T 1l8q_A 149 SDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELR---KEVIDYLLENT-KNVREIEG 206 (324)
T ss_dssp CHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHC-SSHHHHHH
T ss_pred hhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHhC-CCHHHHHH
Confidence 122222335789999 999999999988764443333 35567788888 77654333
No 191
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.41 E-value=5.8e-08 Score=88.23 Aligned_cols=88 Identities=11% Similarity=0.135 Sum_probs=54.2
Q ss_pred cccceEeecCcccccc--cccccccCCccEEeecCChhhhhhhccCccCCcccccCCCCC----CCcccccccccccccc
Q 039535 627 RSLRRVTMVSCHKLKD--LTFLVFAPNLKSISLGDCDALEEIISVGKFAEVPEMMGHLSP----FENLQNLDLSYLLALK 700 (769)
Q Consensus 627 ~~L~~L~L~~~~~l~~--l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~L~~L~l~~c~~l~ 700 (769)
.+|++|++++|. +++ +..+..+++|+.|+|++|..+++-- +..+.. .++|++|+|++|++++
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g-----------L~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGC-----------LERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHH-----------HHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHH-----------HHHHHhcccccCCCCEEEcCCCCcCC
Confidence 357777777774 554 4446667777777777777666531 011112 2467777777777776
Q ss_pred cccCC-CCCCCCcceEeecCCccCCCc
Q 039535 701 SIYWK-PLPFTYLKEMVVNGCDQLKKL 726 (769)
Q Consensus 701 ~~~~~-~~~~~~L~~L~i~~C~~L~~l 726 (769)
+-... ...+++|++|++++|++++..
T Consensus 129 D~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 129 DKGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred HHHHHHHhcCCCCCEEECCCCCCCCch
Confidence 53321 224678888888888777753
No 192
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.40 E-value=4.6e-08 Score=102.70 Aligned_cols=139 Identities=15% Similarity=0.086 Sum_probs=74.9
Q ss_pred CCCceEEEeecccchhcccCccc-----ccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCccc-hh---
Q 039535 402 CPHLLTLFLDFNRELMMIAGGYF-----QFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEELP-EE--- 472 (769)
Q Consensus 402 ~~~L~~L~l~~~~~~~~i~~~~~-----~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp-~~--- 472 (769)
+++|+.|++++|. +.......+ ..+++|++|+|++|.+.. ..+......+.+|++|+|++|.|+... ..
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDP-AGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH-HHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCH-HHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 4567777777776 333222222 123677777777773211 111112233456777777777776321 11
Q ss_pred -h-hcCCCCceeeccCCCcccc-----cchHHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceE
Q 039535 473 -L-KLLVNLKCLNLRWTDVLNK-----IPRQLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEV 545 (769)
Q Consensus 473 -~-~~l~~L~~L~l~~~~~l~~-----lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 545 (769)
+ ...++|++|++++|. ++. ++.. +..+++|++|++++|.+.... -..+...+..+++|+.
T Consensus 149 ~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~l~~~g-----------~~~L~~~L~~~~~L~~ 215 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNP-LTAAGVAVLMEG-LAGNTSVTHLSLLHTGLGDEG-----------LELLAAQLDRNRQLQE 215 (372)
T ss_dssp HHHSTTCCCCEEECCSSC-CHHHHHHHHHHH-HHTCSSCCEEECTTSSCHHHH-----------HHHHHHHGGGCSCCCE
T ss_pred HHHhcCCccceeeCCCCC-CChHHHHHHHHH-HhcCCCcCEEeCCCCCCCcHH-----------HHHHHHHHhcCCCcCe
Confidence 2 235677777777776 332 2222 456777777777777754210 0112444556666777
Q ss_pred EEEEeCChhh
Q 039535 546 LELTLGSYHA 555 (769)
Q Consensus 546 l~l~~~~~~~ 555 (769)
|+++.+.++.
T Consensus 216 L~Ls~N~i~~ 225 (372)
T 3un9_A 216 LNVAYNGAGD 225 (372)
T ss_dssp EECCSSCCCH
T ss_pred EECCCCCCCH
Confidence 7776665543
No 193
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.36 E-value=8.5e-06 Score=87.47 Aligned_cols=182 Identities=18% Similarity=0.189 Sum_probs=104.0
Q ss_pred CccccchHHHHHHHHHHhh------------cCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 20 ERTLVGLQSQLEQVWRCLI------------EESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
-++++|.+...+.+.+.+. ....+.+.|+||+|+|||++|+.++... .. ...+.+ ....
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~---~~--~~~~~v--~~~~-- 203 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---NN--STFFSI--SSSD-- 203 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC---CS--SEEEEE--CCC---
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc---CC--CCEEEE--eHHH--
Confidence 3678999999999988762 1234678999999999999999999986 11 122222 2221
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEcccccccc-------------cccccccCCC--CCC
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERLD-------------LTKVGVPLPG--PKN 151 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~~-------------~~~~~~~l~~--~~~ 151 (769)
+.... .+. ....... +++.. ...+.+|+||+++.... ...+...+.. ...
T Consensus 204 --l~~~~---~g~-----~~~~~~~----~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 269 (444)
T 2zan_A 204 --LVSKW---LGE-----SEKLVKN----LFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 269 (444)
T ss_dssp ------------------CCCTHHH----HHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC
T ss_pred --HHhhh---cch-----HHHHHHH----HHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCC
Confidence 11111 010 1122222 22222 34678999999974310 1112222221 123
Q ss_pred CCcEEEEEcCchhhhc-c-c-CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCc-chHHHHHHH
Q 039535 152 TTSKVVFTTRFFDVCG-S-M-EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGL-PLALVTIGR 227 (769)
Q Consensus 152 ~~~~iiittr~~~~~~-~-~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~~~ 227 (769)
.+..||.||..+.... . . .-...+.++..+.++..+++..++........ ......|++.+.|. +..|..++.
T Consensus 270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT---EADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC---HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4566776775543211 0 1 22357889999999999999888765432222 34566788888884 445555543
No 194
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.31 E-value=1.2e-05 Score=81.68 Aligned_cols=173 Identities=17% Similarity=0.197 Sum_probs=100.4
Q ss_pred ccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 21 RTLVGLQSQLEQVWRCLIE-------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
++++|.+..++++.+++.. ...+.+.|+|++|+|||++|+.++... . ...+.++ .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~---~~~i~v~------~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---Q---ANFISIK------G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---T---CEEEEEC------H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---C---CCEEEEE------h
Confidence 5789999999988887642 234578999999999999999999987 2 1223232 2
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEcccccccc----------------cccccccCCC-C
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERLD----------------LTKVGVPLPG-P 149 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~~----------------~~~~~~~l~~-~ 149 (769)
..+...+. +. .... +..+++.. ...+.++++|+++.... ...+...+.+ .
T Consensus 83 ~~l~~~~~---g~-----~~~~----~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~ 150 (301)
T 3cf0_A 83 PELLTMWF---GE-----SEAN----VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 150 (301)
T ss_dssp HHHHHHHH---TT-----CTTH----HHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC
T ss_pred HHHHhhhc---Cc-----hHHH----HHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc
Confidence 23333222 11 1111 22222222 34678999999964210 1111111110 1
Q ss_pred CCCCcEEEEEcCchhhh-cc-c---CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchH
Q 039535 150 KNTTSKVVFTTRFFDVC-GS-M---EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLA 221 (769)
Q Consensus 150 ~~~~~~iiittr~~~~~-~~-~---~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 221 (769)
...+..||.||...... .. . .-...+.++..+.++..+++...+.......+.. ...++..+.|.|-+
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 22356677777654322 11 1 2235789999999999999988875543222222 23566667777654
No 195
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.30 E-value=1.4e-05 Score=82.46 Aligned_cols=172 Identities=17% Similarity=0.170 Sum_probs=101.2
Q ss_pred ccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 21 RTLVGLQSQLEQVWRCLIE-------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
+++.|-++.+++|.+.+.- ...+-|.++||||+|||.||++++.+. .. ..+.+..+.-.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~---~f~~v~~s~l~-- 219 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DC---KFIRVSGAELV-- 219 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TC---EEEEEEGGGGS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CC---CceEEEhHHhh--
Confidence 5678999988888776531 234568899999999999999999998 22 22333332210
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEccccccc------------c----cccccccCCC-C
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERL------------D----LTKVGVPLPG-P 149 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~------------~----~~~~~~~l~~-~ 149 (769)
.. ...+-+..++.+++.. ...+++|++|++|... . +..+...+.+ .
T Consensus 220 ---------------sk-~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 220 ---------------QK-YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp ---------------CS-STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred ---------------cc-ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 00 1111222333333333 4468999999997421 0 1111111211 2
Q ss_pred CCCCcEEEEEcCchhh-----hcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcch
Q 039535 150 KNTTSKVVFTTRFFDV-----CGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPL 220 (769)
Q Consensus 150 ~~~~~~iiittr~~~~-----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 220 (769)
...+..||.||..++. ...-.-+..+.++..+.++-.++|..+........+-+ ...+++.+.|.--
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~SG 355 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCSG 355 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCCH
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCCH
Confidence 2345566666654432 22223457899999999999999988876554333322 3467777877543
No 196
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.30 E-value=2.5e-06 Score=86.28 Aligned_cols=147 Identities=15% Similarity=0.107 Sum_probs=87.7
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhcc-CCCCEEEEEEecC-CCCHHHHHHHHHHHcCCCC
Q 039535 25 GLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESR-TNFDFVIWVVVSK-DPRLEKIQEDIGKRIGLVD 102 (769)
Q Consensus 25 gR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~w~~~~~-~~~~~~~~~~l~~~l~~~~ 102 (769)
|.+..++.+...+.+++.+...++||+|+|||++|+.+++...... .+.+ +.+++... ..... ..+++.+.....+
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id-~ir~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGID-DIRTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHH-HHHHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHH-HHHHHHHHHhhcc
Confidence 4566778888888776677899999999999999999988641111 2333 34444322 11221 2223333332111
Q ss_pred CCCCCccHHHHHHHHHHHhccceEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCch-hhhcccCCCceEEeec
Q 039535 103 DSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERL--DLTKVGVPLPGPKNTTSKVVFTTRFF-DVCGSMEAHRTFEVAC 179 (769)
Q Consensus 103 ~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~--~~~~~~~~l~~~~~~~~~iiittr~~-~~~~~~~~~~~~~l~~ 179 (769)
..+++-++|+|+++... ....+...+. .....+.+|++|.++ .+...+... .+++.+
T Consensus 79 ------------------~~~~~kvviIdead~lt~~a~naLLk~LE-ep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~ 138 (305)
T 2gno_A 79 ------------------ELYTRKYVIVHDCERMTQQAANAFLKALE-EPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVV 138 (305)
T ss_dssp ------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHH-SCCTTEEEEEEESCGGGSCHHHHTT-SEEEEC
T ss_pred ------------------ccCCceEEEeccHHHhCHHHHHHHHHHHh-CCCCCeEEEEEECChHhChHHHHce-eEeCCC
Confidence 12456789999997532 2333333333 233456666665443 333333333 899999
Q ss_pred CCHHHHHHHHHHHh
Q 039535 180 LSEKDAWELFQEKV 193 (769)
Q Consensus 180 l~~~e~~~l~~~~~ 193 (769)
+++++..+++.+..
T Consensus 139 l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 139 NVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998886
No 197
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.27 E-value=5.8e-06 Score=89.43 Aligned_cols=149 Identities=13% Similarity=0.136 Sum_probs=84.0
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCC----CCEEEEEEecCCCCHHHHHHHHHH
Q 039535 21 RTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTN----FDFVIWVVVSKDPRLEKIQEDIGK 96 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~----~~~~~w~~~~~~~~~~~~~~~l~~ 96 (769)
.++|||+.+++++.+.+.......+.|+|++|+|||++|+.+++........ ...++.++++ .
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------------~ 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------------T 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-------------c
Confidence 5699999999999999976656678899999999999999999997321100 1122223322 0
Q ss_pred HcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhh------h-cc
Q 039535 97 RIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERLDLTKVGVPLPGPKNTTSKVVFTTRFFDV------C-GS 168 (769)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~~~~~~~~~l~~~~~~~~~iiittr~~~~------~-~~ 168 (769)
..... .... .+.+.+.. ...+.++++|. .......+...+. .....+|.+|..... . ..
T Consensus 247 ~~~g~----~e~~----~~~~~~~~~~~~~~iLfiD~--~~~a~~~L~~~L~---~g~v~vI~at~~~e~~~~~~~~~al 313 (468)
T 3pxg_A 247 KYRGE----FEDR----LKKVMDEIRQAGNIILFIDA--AIDASNILKPSLA---RGELQCIGATTLDEYRKYIEKDAAL 313 (468)
T ss_dssp ----------CTT----HHHHHHHHHTCCCCEEEECC----------CCCTT---SSSCEEEEECCTTTTHHHHTTCSHH
T ss_pred cccch----HHHH----HHHHHHHHHhcCCeEEEEeC--chhHHHHHHHhhc---CCCEEEEecCCHHHHHHHhhcCHHH
Confidence 00000 1111 22222222 34578889992 1111122222222 234556666554431 0 11
Q ss_pred cCCCceEEeecCCHHHHHHHHHHHhcc
Q 039535 169 MEAHRTFEVACLSEKDAWELFQEKVGE 195 (769)
Q Consensus 169 ~~~~~~~~l~~l~~~e~~~l~~~~~~~ 195 (769)
......+.+++.+.++..+++......
T Consensus 314 ~~Rf~~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 314 ERRFQPIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp HHSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred HHhCccceeCCCCHHHHHHHHHHHHHH
Confidence 112346999999999999999987644
No 198
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.23 E-value=4.8e-06 Score=97.36 Aligned_cols=155 Identities=12% Similarity=0.178 Sum_probs=88.6
Q ss_pred CccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccC----CCCEEEEEEecCCCCHHHHHHHHH
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRT----NFDFVIWVVVSKDPRLEKIQEDIG 95 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----~~~~~~w~~~~~~~~~~~~~~~l~ 95 (769)
-+++|||+.++.++.+.+.......++|+|++|+|||++|+.+++....... ....+++++++.- .
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l----------~ 238 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSL----------L 238 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------------
T ss_pred CcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHh----------h
Confidence 3568999999999999997665567889999999999999999998732110 1223444433211 0
Q ss_pred HHcCCCCCCCCCccHHHHHHHHHHHhc--cceEEEEEcccccccc-------cc---cccccCCCCCCCCcEEEEEcCch
Q 039535 96 KRIGLVDDSWKSKSVEEKALDIFRSLR--EKRIVLLLDDIWERLD-------LT---KVGVPLPGPKNTTSKVVFTTRFF 163 (769)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~~~-------~~---~~~~~l~~~~~~~~~iiittr~~ 163 (769)
. + . .........+..+.+... +++.++++|+++.... .+ .+...+. .....+|.+|...
T Consensus 239 ~--g-~---~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~---~~~i~~I~at~~~ 309 (854)
T 1qvr_A 239 A--G-A---KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA---RGELRLIGATTLD 309 (854)
T ss_dssp -------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH---TTCCCEEEEECHH
T ss_pred c--c-C---ccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh---CCCeEEEEecCch
Confidence 0 0 0 011233444444444443 3679999999964320 11 1111221 1233455555433
Q ss_pred hh------hcccCCCceEEeecCCHHHHHHHHHHHh
Q 039535 164 DV------CGSMEAHRTFEVACLSEKDAWELFQEKV 193 (769)
Q Consensus 164 ~~------~~~~~~~~~~~l~~l~~~e~~~l~~~~~ 193 (769)
.. .........+.+++++.++..+++....
T Consensus 310 ~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 310 EYREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred HHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 21 1112234569999999999999997654
No 199
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.22 E-value=3.1e-05 Score=79.90 Aligned_cols=193 Identities=19% Similarity=0.165 Sum_probs=103.8
Q ss_pred CccccchHHHHHHHHHHhhcC-----CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHH
Q 039535 20 ERTLVGLQSQLEQVWRCLIEE-----SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDI 94 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~-----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 94 (769)
-+.++|++..++.+...+..+ ....++|+||+|+||||||+.++... ...+ ......-......
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~---~~~sg~~~~~~~~----- 92 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNI---HVTSGPVLVKQGD----- 92 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCE---EEEETTTCCSHHH-----
T ss_pred HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEechHhcCHHH-----
Confidence 367899998888887777532 33678999999999999999999987 2111 1111100001111
Q ss_pred HHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEccccccc--ccccccc---cCC-------CCC--------CCCc
Q 039535 95 GKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERL--DLTKVGV---PLP-------GPK--------NTTS 154 (769)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~--~~~~~~~---~l~-------~~~--------~~~~ 154 (769)
. ..+...+. ++.++++|+++... ..+.+.. ... ... ..-.
T Consensus 93 ------------------l-~~~~~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 93 ------------------M-AAILTSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp ------------------H-HHHHHHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred ------------------H-HHHHHHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 1 11111222 23467778875321 1111100 000 000 0112
Q ss_pred EEEEEcCchhhhccc--CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHHHh---
Q 039535 155 KVVFTTRFFDVCGSM--EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGRAM--- 229 (769)
Q Consensus 155 ~iiittr~~~~~~~~--~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l--- 229 (769)
.+..|++...+.... .....+.+++++.++..+++.+.+....... ..+.+..|++.++|.|..+..+...+
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~---~~~~~~~ia~~~~G~~R~a~~ll~~~~~~ 229 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEI---EDAAAEMIAKRSRGTPRIAIRLTKRVRDM 229 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCB---CHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 223344433221111 1123588999999999999998775433222 24567889999999997665544322
Q ss_pred ---cCC--CCHHHHHHHHHHHh
Q 039535 230 ---ASK--KTAEEWRHAIEELG 246 (769)
Q Consensus 230 ---~~~--~~~~~~~~~l~~l~ 246 (769)
.+. -+.+....+++.+.
T Consensus 230 a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 230 LTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHTCSSBCHHHHHHHHHHHT
T ss_pred HHHcCCCCcCHHHHHHHHHHhC
Confidence 111 24555556555543
No 200
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.20 E-value=2.3e-05 Score=84.57 Aligned_cols=176 Identities=18% Similarity=0.174 Sum_probs=101.8
Q ss_pred ccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 21 RTLVGLQSQLEQVWRCLIE-------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
.+++|.+..++++.+++.. ...+.|.|+|++|+|||++|++++++. . ...+.+++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~---~~fv~vn~~----- 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---G---AFFFLINGP----- 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---S---SEEEEEEHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---C---CCEEEEEch-----
Confidence 5689999999999888742 334578999999999999999998886 1 223444421
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccccc----------------cccccccCCCCCC
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERLD----------------LTKVGVPLPGPKN 151 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~----------------~~~~~~~l~~~~~ 151 (769)
.+...+ ...........+.....+.+.+|+||+++.... +..+...+. ..
T Consensus 273 -----~l~~~~-------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~--~~ 338 (489)
T 3hu3_A 273 -----EIMSKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK--QR 338 (489)
T ss_dssp -----HHHTSC-------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC--TT
T ss_pred -----Hhhhhh-------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc--cC
Confidence 111111 111112222223333355678999999953211 111111111 22
Q ss_pred CCcEEEEEcCchhh-----hcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCc-chHHHHH
Q 039535 152 TTSKVVFTTRFFDV-----CGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGL-PLALVTI 225 (769)
Q Consensus 152 ~~~~iiittr~~~~-----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~ 225 (769)
....||.||..... .........+.+...+.++..+++..++.......+.. ...++..+.|. +..+..+
T Consensus 339 ~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp SCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred CceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh----HHHHHHHccCCcHHHHHHH
Confidence 34566666655422 11112335689999999999999998876544332222 23456666664 4444444
No 201
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=2.1e-05 Score=82.77 Aligned_cols=171 Identities=16% Similarity=0.217 Sum_probs=100.1
Q ss_pred ccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 21 RTLVGLQSQLEQVWRCLIE-------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
+++.|-+..+++|.+.+.- ...+-|.++||+|+|||.+|++++.+. .. ..+.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~---~~~~v~~s~l~s- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GA---NFIFSPASGIVD- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TC---EEEEEEGGGTCC-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CC---CEEEEehhhhcc-
Confidence 5778989888888776531 234678899999999999999999998 22 233333322100
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEcccccccc----------------cccccccCCC-C
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERLD----------------LTKVGVPLPG-P 149 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~~----------------~~~~~~~l~~-~ 149 (769)
. ........+..++... ...+++|++|++|.... +..+...+.+ .
T Consensus 254 ----------------k-~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 254 ----------------K-YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp ----------------S-SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred ----------------c-cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 0 1111222333333333 45689999999974210 1112211211 2
Q ss_pred CCCCcEEEEEcCchhhhc-c-cC---CCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcc
Q 039535 150 KNTTSKVVFTTRFFDVCG-S-ME---AHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLP 219 (769)
Q Consensus 150 ~~~~~~iiittr~~~~~~-~-~~---~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 219 (769)
...+..||.||..+.... . .. -+..+.++..+.++-.++|..+........+-+ ...+++.+.|+-
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 234566777776544321 1 12 245788999999999999988776544222222 345777777754
No 202
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.18 E-value=1.5e-06 Score=77.57 Aligned_cols=45 Identities=27% Similarity=0.280 Sum_probs=37.2
Q ss_pred cccchHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 22 TLVGLQSQLEQVWRCLIE--ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 22 ~~vgR~~~~~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
++||+...+.++.+.+.. .....|.|+|++|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 589999999999998864 344568899999999999999998876
No 203
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.17 E-value=5.1e-05 Score=80.47 Aligned_cols=108 Identities=15% Similarity=0.102 Sum_probs=61.3
Q ss_pred CCCCC-CceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCC-ccccCCCCCCEEeccCCCCCccchh-hhc
Q 039535 399 VPTCP-HLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLP-LGMSKLGSLELLDISHSSIEELPEE-LKL 475 (769)
Q Consensus 399 ~~~~~-~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~ 475 (769)
|.++. .|+.+.+..+ +..|...+|.+|.+|+.+.+..+.-..+..+. ..+.+|.+|+.+.+..+ ++.++.. +..
T Consensus 59 F~~~~~~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTCCSCCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred ccCCCCcCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 45553 4777777532 56677777777777777777654211233333 23455666666655443 4444332 456
Q ss_pred CCCCceeeccCCCcccccchHHhcCCCcCcEEEeec
Q 039535 476 LVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFA 511 (769)
Q Consensus 476 l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~ 511 (769)
+.+|+.+.+..+ +..++..++..+.+|+.+.+..
T Consensus 136 c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 136 CEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp CTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT
T ss_pred hcccccccccce--eeeecccceecccccccccccc
Confidence 666777776543 3455555566666666666643
No 204
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=1.3e-05 Score=83.12 Aligned_cols=171 Identities=17% Similarity=0.187 Sum_probs=99.0
Q ss_pred ccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 21 RTLVGLQSQLEQVWRCLIE-------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
+++.|-++.+++|.+.+.- ...+-|.++||+|+|||.+|++++.+. .. ..+.++.+.-
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~---~fi~v~~s~l--- 252 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SA---TFLRIVGSEL--- 252 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TC---EEEEEESGGG---
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CC---CEEEEEHHHh---
Confidence 5678899888888776531 234678899999999999999999998 22 2223332210
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEcccccccc----------------cccccccCCC-C
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERLD----------------LTKVGVPLPG-P 149 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~~----------------~~~~~~~l~~-~ 149 (769)
. .. ...+.+..+..+++.. ...+++|++|++|.... +..+...+.+ .
T Consensus 253 -----------~---sk-~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 253 -----------I---QK-YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp -----------C---CS-SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred -----------h---hc-cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 0 00 1112223333333333 44689999999973210 0111111110 2
Q ss_pred CCCCcEEEEEcCchhhhc-c-c---CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcc
Q 039535 150 KNTTSKVVFTTRFFDVCG-S-M---EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLP 219 (769)
Q Consensus 150 ~~~~~~iiittr~~~~~~-~-~---~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 219 (769)
...+..||.||..++... . . .-+..+.++..+.++-.++|..+........+-+ ...+++.+.|+-
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 234556666665544322 1 1 2235688999999999999988876554333322 345677777654
No 205
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.17 E-value=1.1e-05 Score=82.71 Aligned_cols=46 Identities=22% Similarity=0.236 Sum_probs=39.1
Q ss_pred ccccchHHHHHHHHHHhhc--------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQSQLEQVWRCLIE--------------ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~--------------~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+.++|++..++.+...+.. .....+.|+|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999887753 234578899999999999999999987
No 206
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=2.5e-05 Score=81.78 Aligned_cols=171 Identities=17% Similarity=0.185 Sum_probs=100.1
Q ss_pred ccccchHHHHHHHHHHhh----------c---CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 21 RTLVGLQSQLEQVWRCLI----------E---ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~----------~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
+++.|-+..+++|.+.+. . ...+-|.++||+|+|||.+|++++.+. .. ..+.+..+.-.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~---~fi~vs~s~L~-- 280 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DA---TFIRVIGSELV-- 280 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TC---EEEEEEGGGGC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CC---CeEEEEhHHhh--
Confidence 578999999888877642 1 245678899999999999999999998 22 22333322210
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEcccccccc----------------cccccccCCC-C
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERLD----------------LTKVGVPLPG-P 149 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~~----------------~~~~~~~l~~-~ 149 (769)
.. ....-+..++.+++.. ...+++|++|+++.... .-.+...+.+ .
T Consensus 281 ---------------sk-~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 344 (467)
T 4b4t_H 281 ---------------QK-YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD 344 (467)
T ss_dssp ---------------CC-SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC
T ss_pred ---------------cc-cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC
Confidence 00 1111222333333333 45689999999963210 0011111111 2
Q ss_pred CCCCcEEEEEcCchhh-----hcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcc
Q 039535 150 KNTTSKVVFTTRFFDV-----CGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLP 219 (769)
Q Consensus 150 ~~~~~~iiittr~~~~-----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 219 (769)
...+..||.||..+.. ...-+-+..++++..+.++-.++|..+........+-. ...|++.+.|.-
T Consensus 345 ~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 345 PRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp CTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred CCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 2345566667654432 22113456789999999999999988876544333222 345777787754
No 207
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.16 E-value=2e-05 Score=83.70 Aligned_cols=122 Identities=12% Similarity=0.222 Sum_probs=85.7
Q ss_pred ceeEEEEeecccccc--CCCCCCCCceEEEeeccc--chhcccCcccccCCcccEEEeeccCccccccCC-ccccCCCCC
Q 039535 382 NVRRLSLMQNQIKVL--SEVPTCPHLLTLFLDFNR--ELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLP-LGMSKLGSL 456 (769)
Q Consensus 382 ~l~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~~~--~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~-~~~~~l~~L 456 (769)
.|+.+.+..+ +..+ .+|.+|.+|+.+.+..|. .+..++..+|.+|.+|+.+.+..+ +..++ ..+..+.+|
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~----~~~I~~~aF~~c~~L 139 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS----VTEIDSEAFHHCEEL 139 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT----CSEECTTTTTTCTTC
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc----cceehhhhhhhhccc
Confidence 4777777643 4444 357889999999998652 477888888999999998877653 33443 346788899
Q ss_pred CEEeccCCCCCccch-hhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeecc
Q 039535 457 ELLDISHSSIEELPE-ELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFAT 512 (769)
Q Consensus 457 ~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~ 512 (769)
+.+.+..+ ++.++. .+..+.+|+.+.+..+ +..+...++.+ .+|+.+.+..+
T Consensus 140 ~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~~ 192 (394)
T 4gt6_A 140 DTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPAK 192 (394)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECTT
T ss_pred ccccccce-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEECCc
Confidence 99998754 444443 3667888999988765 56666665643 56888877543
No 208
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.14 E-value=2.2e-05 Score=90.86 Aligned_cols=154 Identities=15% Similarity=0.252 Sum_probs=92.9
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCC---CCEEEE-EEecCCCCHHHHHHHHHH
Q 039535 21 RTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTN---FDFVIW-VVVSKDPRLEKIQEDIGK 96 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~---~~~~~w-~~~~~~~~~~~~~~~l~~ 96 (769)
.+++||+.+++++.+.+.......++|+|++|+|||++|+.+++......-. ....++ ++...-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------------
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------------
Confidence 5689999999999999976666678899999999999999999987321110 122222 211110
Q ss_pred HcCCCCCCCCCccHHHHHHHHHHHhc-cceEEEEEccccccc--------cc---ccccccCCCCCCCCcEEEEEcCchh
Q 039535 97 RIGLVDDSWKSKSVEEKALDIFRSLR-EKRIVLLLDDIWERL--------DL---TKVGVPLPGPKNTTSKVVFTTRFFD 164 (769)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~llvlDd~~~~~--------~~---~~~~~~l~~~~~~~~~iiittr~~~ 164 (769)
.. . .......+...+.+.+.+. .++.++++||++... .. ..+...+. .....+|.+|....
T Consensus 254 -~~--~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~---~~~~~~I~at~~~~ 326 (758)
T 1r6b_X 254 -LA--G-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS---SGKIRVIGSTTYQE 326 (758)
T ss_dssp --C--C-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS---SCCCEEEEEECHHH
T ss_pred -hc--c-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh---CCCeEEEEEeCchH
Confidence 00 0 0122344555555555553 357899999996431 11 11222222 23456666665443
Q ss_pred hhcc-------cCCCceEEeecCCHHHHHHHHHHHh
Q 039535 165 VCGS-------MEAHRTFEVACLSEKDAWELFQEKV 193 (769)
Q Consensus 165 ~~~~-------~~~~~~~~l~~l~~~e~~~l~~~~~ 193 (769)
.... ......+.++..+.++..+++....
T Consensus 327 ~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 2111 1123468999999999999997765
No 209
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.12 E-value=7.1e-06 Score=86.18 Aligned_cols=171 Identities=18% Similarity=0.193 Sum_probs=99.3
Q ss_pred ccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 21 RTLVGLQSQLEQVWRCLIE-------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
+++.|-+..+++|.+.+.- ...+-|.+|||||+|||.+|++++.+. .. ..+.++.+.-
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~---~f~~v~~s~l--- 251 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NA---TFLKLAAPQL--- 251 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TC---EEEEEEGGGG---
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CC---CEEEEehhhh---
Confidence 6789999999998876421 234678899999999999999999998 22 2333332221
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEcccccc--------c----c----cccccccCCC-C
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWER--------L----D----LTKVGVPLPG-P 149 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~--------~----~----~~~~~~~l~~-~ 149 (769)
. .. .....+..++.+++.. ...+++|++|+++.. . . ...+...+.+ .
T Consensus 252 -----------~---~~-~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 252 -----------V---QM-YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp -----------C---SS-CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred -----------h---hc-ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 0 00 1111222333333333 346899999999631 0 0 1112222221 1
Q ss_pred CCCCcEEEEEcCchhhhc-cc----CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcc
Q 039535 150 KNTTSKVVFTTRFFDVCG-SM----EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLP 219 (769)
Q Consensus 150 ~~~~~~iiittr~~~~~~-~~----~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 219 (769)
...+..||.||..+.... .+ .-+..+.++..+.++-.++|..+........+-+ ...|++.+.|+-
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 234556666776544321 11 2346789999999999999987775443222222 345777777754
No 210
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.08 E-value=4.7e-06 Score=83.29 Aligned_cols=174 Identities=18% Similarity=0.101 Sum_probs=92.4
Q ss_pred CccccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 20 ERTLVGLQSQLEQVWRCLIE------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
-++++|.+..++.+.+.+.. ...+.+.|+|++|+|||++|+.++++. ...+- .++...-.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~---~v~~~~~~-- 81 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---HVPFF---SMGGSSFI-- 81 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH---TCCCC---CCCSCTTT--
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEE---EechHHHH--
Confidence 36799999888888776541 123347899999999999999999987 22221 11111100
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccccc-----------------cccccccCCCC-
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERLD-----------------LTKVGVPLPGP- 149 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~-----------------~~~~~~~l~~~- 149 (769)
...... ........+.. .....+.++++||++.... ...+...+...
T Consensus 82 --------~~~~~~----~~~~~~~~~~~---a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (268)
T 2r62_A 82 --------EMFVGL----GASRVRDLFET---AKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG 146 (268)
T ss_dssp --------TSCSSS----CSSSSSTTHHH---HHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS
T ss_pred --------Hhhcch----HHHHHHHHHHH---HHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc
Confidence 000000 00111111111 1123567999999964311 12222222211
Q ss_pred -CCCCcEEEEEcCchhh-----hcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcch
Q 039535 150 -KNTTSKVVFTTRFFDV-----CGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPL 220 (769)
Q Consensus 150 -~~~~~~iiittr~~~~-----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 220 (769)
......||.||..... .........+.++..+.++..+++...+.......+.. ...+++.+.|.+-
T Consensus 147 ~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~g~~g 219 (268)
T 2r62_A 147 SENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVN----LQEVAKLTAGLAG 219 (268)
T ss_dssp CSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCC----TTTTTSSSCSSCH
T ss_pred cCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccC----HHHHHHHcCCCCH
Confidence 1223566667765432 12112235688899999999999988775433211111 2235555666654
No 211
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.05 E-value=4.8e-05 Score=87.94 Aligned_cols=150 Identities=13% Similarity=0.119 Sum_probs=84.4
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCC----CCEEEEEEecCCCCHHHHHHHHHH
Q 039535 21 RTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTN----FDFVIWVVVSKDPRLEKIQEDIGK 96 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~----~~~~~w~~~~~~~~~~~~~~~l~~ 96 (769)
.++|||+.+++++.+.+.......+.|+|++|+|||++|+.+++.+...... ...++.++.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------------
Confidence 5699999999999999976666678999999999999999999997321111 111222222
Q ss_pred HcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhh------h-ccc
Q 039535 97 RIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERLDLTKVGVPLPGPKNTTSKVVFTTRFFDV------C-GSM 169 (769)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~~~~~~~~l~~~~~~~~~iiittr~~~~------~-~~~ 169 (769)
+..............+.. .....+.++++|.- ......+...+. .....+|.+|..... . +..
T Consensus 245 --g~~~~G~~e~~l~~~~~~---~~~~~~~iLfiD~~--~~~~~~L~~~l~---~~~v~~I~at~~~~~~~~~~~d~al~ 314 (758)
T 3pxi_A 245 --GTKYRGEFEDRLKKVMDE---IRQAGNIILFIDAA--IDASNILKPSLA---RGELQCIGATTLDEYRKYIEKDAALE 314 (758)
T ss_dssp ----------CTTHHHHHHH---HHTCCCCEEEECC----------CCCTT---SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred --cccccchHHHHHHHHHHH---HHhcCCEEEEEcCc--hhHHHHHHHHHh---cCCEEEEeCCChHHHHHHhhccHHHH
Confidence 000000011122222222 22356789999922 111222222222 334566666654431 0 001
Q ss_pred CCCceEEeecCCHHHHHHHHHHHhcc
Q 039535 170 EAHRTFEVACLSEKDAWELFQEKVGE 195 (769)
Q Consensus 170 ~~~~~~~l~~l~~~e~~~l~~~~~~~ 195 (769)
.....+.++.++.++..+++......
T Consensus 315 rRf~~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 315 RRFQPIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred hhCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 12356999999999999999876644
No 212
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.03 E-value=0.00015 Score=71.79 Aligned_cols=178 Identities=17% Similarity=0.150 Sum_probs=97.0
Q ss_pred CccccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 20 ERTLVGLQSQLEQVWRCLIE------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
-++++|.+..++++.+.+.. ...+-+.|+|++|+|||++|+.+++.. ... .+.++...-..
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~i~~~~~~~- 83 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVP---FFTISGSDFVE- 83 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCC---EEEECSCSSTT-
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCC---EEEEeHHHHHH-
Confidence 46789999888887765421 123468899999999999999999887 221 23333221100
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEcccccccc----------------cccccccCCC-C
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERLD----------------LTKVGVPLPG-P 149 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~~----------------~~~~~~~l~~-~ 149 (769)
.. ...... ....+.+.. ...+.++++|+++.... ...+...+.. .
T Consensus 84 ---------~~-------~~~~~~-~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (257)
T 1lv7_A 84 ---------MF-------VGVGAS-RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE 146 (257)
T ss_dssp ---------SC-------CCCCHH-HHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC
T ss_pred ---------Hh-------hhhhHH-HHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc
Confidence 00 111112 222333333 44578999999953211 0111111110 1
Q ss_pred CCCCcEEEEEcCchhhh-ccc----CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCC-cchHHH
Q 039535 150 KNTTSKVVFTTRFFDVC-GSM----EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGG-LPLALV 223 (769)
Q Consensus 150 ~~~~~~iiittr~~~~~-~~~----~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~ 223 (769)
...+..||.||...... ..+ .-...+.++..+.++-.+++...........+. ....++..+.| .+.-+.
T Consensus 147 ~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~----~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 147 GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI----DAAIIARGTPGFSGADLA 222 (257)
T ss_dssp SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC----CHHHHHHTCTTCCHHHHH
T ss_pred cCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc----cHHHHHHHcCCCCHHHHH
Confidence 12345666676654321 111 123568888889999888888776543322221 12356666777 665554
Q ss_pred HH
Q 039535 224 TI 225 (769)
Q Consensus 224 ~~ 225 (769)
.+
T Consensus 223 ~l 224 (257)
T 1lv7_A 223 NL 224 (257)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 213
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=0.00013 Score=76.67 Aligned_cols=171 Identities=19% Similarity=0.247 Sum_probs=94.1
Q ss_pred ccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 21 RTLVGLQSQLEQVWRCLIE-------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
+++.|-+..+++|.+.+.- ...+-+.++||+|+|||.+|++++.+. .. ..+.++.+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~---~~~~v~~~~l~~- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST---KA---AFIRVNGSEFVH- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH---TC---EEEEEEGGGTCC-
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CC---CeEEEecchhhc-
Confidence 6789999999888776531 234568899999999999999999998 22 233343322100
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEccccccc------------c----cccccccCCC-C
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERL------------D----LTKVGVPLPG-P 149 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~------------~----~~~~~~~l~~-~ 149 (769)
. ........++.+++.. ...++++++|+++... . +..+...+.+ .
T Consensus 245 ----------------~-~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 245 ----------------K-YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp ----------------S-SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred ----------------c-ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 0 1111222333333333 4468999999996310 0 1111111110 1
Q ss_pred CCCCcEEEEEcCchhh-----hcccCCCceEEeecC-CHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcc
Q 039535 150 KNTTSKVVFTTRFFDV-----CGSMEAHRTFEVACL-SEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLP 219 (769)
Q Consensus 150 ~~~~~~iiittr~~~~-----~~~~~~~~~~~l~~l-~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 219 (769)
...+..||.||..+.. ...-.-+..++++.+ +.++-.+++..+........+-+ ...+++.+.|.-
T Consensus 308 ~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 308 QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 2345566767754432 221122346778655 55666667766665443222222 345677777754
No 214
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=1.5e-05 Score=72.40 Aligned_cols=86 Identities=10% Similarity=0.064 Sum_probs=58.8
Q ss_pred CcccEEEeeccCccccccCCccccCCCCCCEEeccCC-CCCc-cchhhhcC----CCCceeeccCCCcccccchHHhcCC
Q 039535 428 PSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHS-SIEE-LPEELKLL----VNLKCLNLRWTDVLNKIPRQLISNL 501 (769)
Q Consensus 428 ~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~-~i~~-lp~~~~~l----~~L~~L~l~~~~~l~~lp~~~~~~l 501 (769)
.+|+.|++++|.. ....+ ..+..|++|++|+|++| .|+. --..+..+ ++|++|++++|..+++-.-..+.++
T Consensus 61 ~~L~~LDLs~~~I-td~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCI-MSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCC-CGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCcCCCc-cHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 5789999998842 22223 34567888889998888 4772 12334443 4788888888876665433336778
Q ss_pred CcCcEEEeeccCCC
Q 039535 502 SRVRVLRMFATGYD 515 (769)
Q Consensus 502 ~~L~~L~l~~~~~~ 515 (769)
++|++|++++|...
T Consensus 139 ~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 139 RNLKYLFLSDLPGV 152 (176)
T ss_dssp TTCCEEEEESCTTC
T ss_pred CCCCEEECCCCCCC
Confidence 88888888888755
No 215
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.94 E-value=2.6e-06 Score=83.74 Aligned_cols=109 Identities=18% Similarity=0.224 Sum_probs=68.5
Q ss_pred CCCCCCceE--EEeecccchhccc---CcccccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCCccchhh
Q 039535 399 VPTCPHLLT--LFLDFNRELMMIA---GGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIEELPEEL 473 (769)
Q Consensus 399 ~~~~~~L~~--L~l~~~~~~~~i~---~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~ 473 (769)
+...+.|.. ++++.|. ...++ .....++++|+.|+|++|.+.++..+|..+..+++|++|+|++|.|+.+ ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~-~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNR-RSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTS-HHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGG
T ss_pred cCCCcchhhcCccccCCH-HHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhh
Confidence 344445554 5555553 22222 1123567888888888886555555566667788888888888888765 234
Q ss_pred hcCC--CCceeeccCCCcccccc------hHHhcCCCcCcEEEe
Q 039535 474 KLLV--NLKCLNLRWTDVLNKIP------RQLISNLSRVRVLRM 509 (769)
Q Consensus 474 ~~l~--~L~~L~l~~~~~l~~lp------~~~~~~l~~L~~L~l 509 (769)
..+. +|++|++++|.....+| ..++..+++|+.|+-
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 4444 88888888887554444 233667788877753
No 216
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.93 E-value=1.2e-05 Score=83.42 Aligned_cols=21 Identities=14% Similarity=0.042 Sum_probs=12.0
Q ss_pred ceEEeecCC-HHHHHHHHHHHh
Q 039535 173 RTFEVACLS-EKDAWELFQEKV 193 (769)
Q Consensus 173 ~~~~l~~l~-~~e~~~l~~~~~ 193 (769)
-......++ .++|...+.+..
T Consensus 36 g~~~~~~f~~~~~a~~~~~~l~ 57 (362)
T 2ra8_A 36 GQTQVKNFSSAGEAEKAAGKLI 57 (362)
T ss_dssp CEEEEEECSSHHHHHHHHHHHH
T ss_pred ceEEeeeCCCHHHHHHHHHHHH
Confidence 345566666 566666665544
No 217
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.90 E-value=1.2e-05 Score=83.45 Aligned_cols=57 Identities=28% Similarity=0.328 Sum_probs=32.1
Q ss_pred cccCCcccEEEeeccCccccccCCccccCCCCCCEEeccCCCCC-ccchhhh--cCCCCceeecc
Q 039535 424 FQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLELLDISHSSIE-ELPEELK--LLVNLKCLNLR 485 (769)
Q Consensus 424 ~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~--~l~~L~~L~l~ 485 (769)
+..+++|+.|+|++|. ++ .++. +. +++|++|++..|.++ .....+. .+++|+.|+|+
T Consensus 168 l~~~P~L~~L~L~g~~--~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTN--NL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTTCCEEEEECCB--TC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HhcCCCCcEEEEeCCC--Cc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 4556777777777662 12 2332 22 567777777766665 2112232 56777777764
No 218
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.89 E-value=6.2e-05 Score=81.19 Aligned_cols=46 Identities=26% Similarity=0.312 Sum_probs=37.1
Q ss_pred ccccchHHHHHHHHHHhh---cC--CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQSQLEQVWRCLI---EE--SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~---~~--~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
++++|.+..++.+..++. .+ ..+.+.++||+|+|||++|+.+++.+
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 679999999887655543 33 23578899999999999999999987
No 219
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.87 E-value=0.00031 Score=75.10 Aligned_cols=173 Identities=15% Similarity=0.117 Sum_probs=97.9
Q ss_pred CccccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 20 ERTLVGLQSQLEQVWRCLIE------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
-++++|.+..++++.+.+.. .-.+-|.|+|++|+|||+||+.++.+. ... .+.++++.-...
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~---f~~is~~~~~~~ 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVP---FFHISGSDFVEL 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCC---EEEEEGGGTTTC
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCC---eeeCCHHHHHHH
Confidence 36789999988887766431 113458899999999999999999987 222 233333221110
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccccc----------------cccccccCCC-CC
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERLD----------------LTKVGVPLPG-PK 150 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~----------------~~~~~~~l~~-~~ 150 (769)
. ...........+.......+.+|++|+++.... +..+...+.+ ..
T Consensus 89 ----------~-------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~ 151 (476)
T 2ce7_A 89 ----------F-------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS 151 (476)
T ss_dssp ----------C-------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG
T ss_pred ----------H-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC
Confidence 0 111111122222233345789999999965211 1111111110 11
Q ss_pred CCCcEEEEEcCchhhhc-c-c---CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcc
Q 039535 151 NTTSKVVFTTRFFDVCG-S-M---EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLP 219 (769)
Q Consensus 151 ~~~~~iiittr~~~~~~-~-~---~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 219 (769)
..+..||.||....... . . .-...+.++..+.++-.+++..+........+.. ...++..+.|+.
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 23556777776654322 1 1 2234788999999888899887775543222211 345777888877
No 220
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.86 E-value=3.5e-05 Score=78.86 Aligned_cols=60 Identities=20% Similarity=0.323 Sum_probs=45.1
Q ss_pred ccccchHHHHHHHHHHhhcC---------CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC
Q 039535 21 RTLVGLQSQLEQVWRCLIEE---------SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK 83 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~ 83 (769)
..++|++..++.+...+... ....+.|+|++|+|||++|+.+++... ......+.++++.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~---~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF---DTEEAMIRIDMTE 85 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH---SCGGGEEEEEGGG
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc---CCCcceEEeeccc
Confidence 46899999999998888642 135799999999999999999999872 2222345556554
No 221
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.84 E-value=3.8e-06 Score=74.71 Aligned_cols=45 Identities=13% Similarity=0.088 Sum_probs=35.6
Q ss_pred cccchHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 22 TLVGLQSQLEQVWRCLIE--ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 22 ~~vgR~~~~~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+++|++..++++.+.+.. .....|.|+|++|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 579999999999888764 344568899999999999999988875
No 222
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.80 E-value=1.9e-05 Score=73.49 Aligned_cols=46 Identities=22% Similarity=0.201 Sum_probs=33.8
Q ss_pred ccccc----hHHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVG----LQSQLEQVWRCLIE---ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vg----R~~~~~~l~~~l~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
++|++ ++..++.+.+++.+ .....++|+|++|+||||||+.++...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 10 DTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp SSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45664 44555555555543 234688999999999999999999988
No 223
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.79 E-value=0.00027 Score=70.70 Aligned_cols=173 Identities=18% Similarity=0.155 Sum_probs=94.0
Q ss_pred CCccccchHHHHHHHHHHhhc--C----------CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCC
Q 039535 19 TERTLVGLQSQLEQVWRCLIE--E----------SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPR 86 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~--~----------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~ 86 (769)
..++++|.+...+++.+.... . -.+-++|+|++|+||||||+.++... . ...+.++..
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~---~---~~~i~~~~~---- 107 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---R---VPFITASGS---- 107 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT---T---CCEEEEEHH----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc---C---CCEEEecHH----
Confidence 346789998887777655421 1 12238899999999999999999887 2 223333321
Q ss_pred HHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc-cceEEEEEccccccc----------------ccccccccCCCC
Q 039535 87 LEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLR-EKRIVLLLDDIWERL----------------DLTKVGVPLPGP 149 (769)
Q Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~llvlDd~~~~~----------------~~~~~~~~l~~~ 149 (769)
.+ .... .......+..+.+... ..+.++++|+++... ....+...+.+.
T Consensus 108 --~~----~~~~--------~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg 173 (278)
T 1iy2_A 108 --DF----VEMF--------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 173 (278)
T ss_dssp --HH----HHST--------TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTC
T ss_pred --HH----HHHH--------hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCC
Confidence 11 1100 0111222334444433 456899999995321 011222222211
Q ss_pred CC-CCcEEEEEcCchhh-----hcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcc
Q 039535 150 KN-TTSKVVFTTRFFDV-----CGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLP 219 (769)
Q Consensus 150 ~~-~~~~iiittr~~~~-----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 219 (769)
.. ....++.+|..+.. .........+.++..+.++-.+++...........+. ....++..+.|..
T Consensus 174 ~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~----~~~~la~~~~G~~ 245 (278)
T 1iy2_A 174 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV----DLALLAKRTPGFV 245 (278)
T ss_dssp CTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC----CHHHHHHTCTTCC
T ss_pred CCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc----CHHHHHHHcCCCC
Confidence 11 22344445555433 2222344678999999999999988776433322221 1335666676655
No 224
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.79 E-value=7.5e-05 Score=70.81 Aligned_cols=60 Identities=25% Similarity=0.119 Sum_probs=40.0
Q ss_pred CCccccchH----HHHHHHHHHhhcC----CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEe
Q 039535 19 TERTLVGLQ----SQLEQVWRCLIEE----SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVV 81 (769)
Q Consensus 19 ~~~~~vgR~----~~~~~l~~~l~~~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~ 81 (769)
.-++|++.. ..++.+.+++... ..+.+.|+|++|+|||+||+.+++... .....++++++
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~ 90 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYV 90 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEH
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEh
Confidence 345677644 3445555555432 116889999999999999999999882 22344566654
No 225
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.78 E-value=0.00037 Score=73.33 Aligned_cols=122 Identities=10% Similarity=0.120 Sum_probs=64.8
Q ss_pred cceeEEEEeeccccccC--CCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCCccccCCCCCCE
Q 039535 381 ENVRRLSLMQNQIKVLS--EVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLPLGMSKLGSLEL 458 (769)
Q Consensus 381 ~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~~~~~~l~~L~~ 458 (769)
++++.+.+.. .+..+. .|.+|.+|+.+.+..+ +..++..+|.+| +|+.+.+.. ++..+....-...+|+.
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~----~l~~I~~~aF~~~~L~~ 117 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGME----RVKKFGDYVFQGTDLDD 117 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECT----TCCEECTTTTTTCCCSE
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCc----eeeEeccceeccCCccc
Confidence 4556665543 233332 4667777777777532 566777777776 466665543 23334332222236777
Q ss_pred EeccCCCCCccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccC
Q 039535 459 LDISHSSIEELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATG 513 (769)
Q Consensus 459 L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~ 513 (769)
+.+..+ ++.+........+|..+.+..+ +..+...++..+.+++.+.+..+.
T Consensus 118 i~lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~~~ 169 (379)
T 4h09_A 118 FEFPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSSNN 169 (379)
T ss_dssp EECCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECTTC
T ss_pred ccCCCc-cccccccccccceeeeeeccce--eeccccchhccccccccccccccc
Confidence 777654 3333333222235555555443 344444446667777766665443
No 226
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.75 E-value=7.1e-05 Score=75.81 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=38.9
Q ss_pred ccccchHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQSQLEQVWRCLIE--ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+.++|+...+.++.+.+.. .....|.|+|++|+|||++|+.+.+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 4689999999999988864 444578899999999999999999875
No 227
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.74 E-value=2.2e-05 Score=73.25 Aligned_cols=93 Identities=14% Similarity=0.077 Sum_probs=40.3
Q ss_pred ccCCCCCCEEeccCCCCCc-----cchhhhcCCCCceeeccCCCcccc----cchHHhcCCCcCcEEEe--eccCCCccc
Q 039535 450 MSKLGSLELLDISHSSIEE-----LPEELKLLVNLKCLNLRWTDVLNK----IPRQLISNLSRVRVLRM--FATGYDRFH 518 (769)
Q Consensus 450 ~~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~l~~----lp~~~~~~l~~L~~L~l--~~~~~~~~~ 518 (769)
+...++|++|+|++|.|.. +...+...++|++|++++|..-.. +... +...++|++|++ .+|.+....
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g 139 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA-LQSNTSLIELRIDNQSQPLGNNV 139 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG-GGGCSSCCEEECCCCSSCCCHHH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH-HHhCCCceEEEecCCCCCCCHHH
Confidence 3334445555555554441 222233444555555555542111 1111 334455555555 445443210
Q ss_pred cccccccccCCccchhhhhhcCCCceEEEEEeCChh
Q 039535 519 EASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYH 554 (769)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~ 554 (769)
...+...+...++|+.|+++.+.+.
T Consensus 140 -----------~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 140 -----------EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp -----------HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred -----------HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 0112334444555666666555543
No 228
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.70 E-value=0.00027 Score=71.17 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+.+.|+||+|+|||+||+++++.+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999998
No 229
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.70 E-value=0.00028 Score=79.91 Aligned_cols=172 Identities=17% Similarity=0.222 Sum_probs=99.2
Q ss_pred ccccchHHHHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 21 RTLVGLQSQLEQVWRCLI----E---------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~----~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
+++.|-++.+++|.+.+. . ...+-|.++||+|+|||+||++++.+. .. ..+.++.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~---~~~~v~~~~---- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GA---FFFLINGPE---- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TC---EEEEEEHHH----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CC---eEEEEEhHH----
Confidence 567888888887777642 1 234578999999999999999999997 22 234443211
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEccccccc--------c-----cccccccCCC-CCCC
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERL--------D-----LTKVGVPLPG-PKNT 152 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~--------~-----~~~~~~~l~~-~~~~ 152 (769)
+... .....+..+..+++.. ...+.+|++|+++... + ...+...+.+ ....
T Consensus 274 ------l~sk--------~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~ 339 (806)
T 3cf2_A 274 ------IMSK--------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp ------HHSS--------CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGG
T ss_pred ------hhcc--------cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccC
Confidence 1111 1112223333333333 5568999999997421 0 1111111110 1123
Q ss_pred CcEEEEEcCchhhh-ccc----CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcch
Q 039535 153 TSKVVFTTRFFDVC-GSM----EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPL 220 (769)
Q Consensus 153 ~~~iiittr~~~~~-~~~----~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 220 (769)
+..||.||...... ..+ .-...++++..+.++-.+++..+........+-+ ...+++.+.|.--
T Consensus 340 ~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfsg 408 (806)
T 3cf2_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVG 408 (806)
T ss_dssp CEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCCH
T ss_pred CEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCCH
Confidence 45566666554332 111 2346799999999999999988775544333222 3457777777643
No 230
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.61 E-value=0.00014 Score=75.01 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=38.8
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+.++|++..++.+...+..+ +.+.++|++|+|||++|+.+++..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 57899999999998888654 368899999999999999999887
No 231
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.60 E-value=0.00058 Score=67.26 Aligned_cols=172 Identities=19% Similarity=0.179 Sum_probs=92.5
Q ss_pred CccccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 20 ERTLVGLQSQLEQVWRCLIE------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
-++++|.+....++.+.... .-.+-++|+|++|+||||||+.++... . ...+.++..
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~---~---~~~i~~~~~----- 83 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---R---VPFITASGS----- 83 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT---T---CCEEEEEHH-----
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---C---CCEEEeeHH-----
Confidence 36789988777766554321 112238899999999999999999887 2 223333321
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc-cceEEEEEcccccccc----------------cccccccCCC-C
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLR-EKRIVLLLDDIWERLD----------------LTKVGVPLPG-P 149 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~llvlDd~~~~~~----------------~~~~~~~l~~-~ 149 (769)
. +.... .......+..+.+... ..+.++++|+++.... ...+...+.+ .
T Consensus 84 -~----~~~~~--------~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~ 150 (254)
T 1ixz_A 84 -D----FVEMF--------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 150 (254)
T ss_dssp -H----HHHSC--------TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC
T ss_pred -H----HHHHH--------hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC
Confidence 1 11110 0111223344444443 4568999999953210 1122212211 1
Q ss_pred CCCCcEEEEEcCchhhh-----cccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcc
Q 039535 150 KNTTSKVVFTTRFFDVC-----GSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLP 219 (769)
Q Consensus 150 ~~~~~~iiittr~~~~~-----~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 219 (769)
......++.+|..+... ........+.++..+.++-.+++...........+.. ...+++.+.|.-
T Consensus 151 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 151 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp TTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence 12233445555554432 1112345789999999998999887764332222211 335666676654
No 232
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.59 E-value=0.00038 Score=76.52 Aligned_cols=155 Identities=17% Similarity=0.197 Sum_probs=79.2
Q ss_pred ccccchHHHHHHHHHHhh------cCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHH
Q 039535 21 RTLVGLQSQLEQVWRCLI------EESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDI 94 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 94 (769)
++++|-+.....+.+.+. ......+.|+||+|+||||||+.++... ... ...+.+....+...+....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l---~~~---~~~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL---GRK---FVRISLGGVRDESEIRGHR 154 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH---TCE---EEEECCCC-----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc---CCC---eEEEEecccchhhhhhhHH
Confidence 457888888777755432 1234589999999999999999999987 221 2222222211211111111
Q ss_pred HHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccccc------cccccccCCC-------------CC-CCCc
Q 039535 95 GKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERLD------LTKVGVPLPG-------------PK-NTTS 154 (769)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~------~~~~~~~l~~-------------~~-~~~~ 154 (769)
....+. . ...............-++++|+++.... ...+...+.. .. ....
T Consensus 155 ~~~ig~--------~-~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v 225 (543)
T 3m6a_A 155 RTYVGA--------M-PGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKV 225 (543)
T ss_dssp ------------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSC
T ss_pred HHHhcc--------C-chHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccce
Confidence 111110 0 0111122222323334888999964311 1222211110 00 0345
Q ss_pred EEEEEcCchh-----hhcccCCCceEEeecCCHHHHHHHHHHHh
Q 039535 155 KVVFTTRFFD-----VCGSMEAHRTFEVACLSEKDAWELFQEKV 193 (769)
Q Consensus 155 ~iiittr~~~-----~~~~~~~~~~~~l~~l~~~e~~~l~~~~~ 193 (769)
.||.||.... +..++ ..+.+++++.++..+++.+++
T Consensus 226 ~iI~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 226 LFIATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEEEECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred EEEeccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 6777766533 22222 478999999999999988765
No 233
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.57 E-value=3.3e-05 Score=71.98 Aligned_cols=115 Identities=15% Similarity=0.102 Sum_probs=80.5
Q ss_pred CCCCCCceEEEeecc-cchhccc----CcccccCCcccEEEeeccCccc--cccCCccccCCCCCCEEeccCCCCCc---
Q 039535 399 VPTCPHLLTLFLDFN-RELMMIA----GGYFQFMPSLKVLKISNIGYFN--VLKLPLGMSKLGSLELLDISHSSIEE--- 468 (769)
Q Consensus 399 ~~~~~~L~~L~l~~~-~~~~~i~----~~~~~~l~~L~~L~l~~~~~~~--~~~l~~~~~~l~~L~~L~l~~~~i~~--- 468 (769)
+...+.|++|++++| . +.+.. ...+...++|++|+|++|.+.. ...+...+...++|++|+|++|.|+.
T Consensus 32 l~~~~~L~~L~L~~n~~-i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMN-IPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTT-CCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HhcCCCCCEEEecCCCC-CCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 466888999999988 4 43211 2236678899999999994321 11234455666889999999999883
Q ss_pred --cchhhhcCCCCceeec--cCCCcccc----cchHHhcCCCcCcEEEeeccCCC
Q 039535 469 --LPEELKLLVNLKCLNL--RWTDVLNK----IPRQLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 469 --lp~~~~~l~~L~~L~l--~~~~~l~~----lp~~~~~~l~~L~~L~l~~~~~~ 515 (769)
+...+...++|++|++ ++|..-.. +.. .+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCCC
Confidence 4556777889999999 77763222 222 2556789999999998764
No 234
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.55 E-value=4.4e-05 Score=88.20 Aligned_cols=147 Identities=17% Similarity=0.146 Sum_probs=82.5
Q ss_pred ccccchHHHHHHHHHHhhcC---------CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHH
Q 039535 21 RTLVGLQSQLEQVWRCLIEE---------SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQ 91 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 91 (769)
..++|.+..++.+...+... ..+.+.++|++|+|||++|+.+++.. .......+.++++.-.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l---~~~~~~~i~i~~s~~~~~~--- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI---FGDEESMIRIDMSEYMEKH--- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH---HSCTTCEEEEEGGGGCSSC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh---cCCCcceEEEechhccccc---
Confidence 46899999999998888631 12368999999999999999999987 2333345555554321100
Q ss_pred HHHHHHcCCCCCCCCCccHHHHHHHHHHHhccceEEEEEcccccccc--cccc---c--ccCC-----CCCCCCcEEEEE
Q 039535 92 EDIGKRIGLVDDSWKSKSVEEKALDIFRSLREKRIVLLLDDIWERLD--LTKV---G--VPLP-----GPKNTTSKVVFT 159 (769)
Q Consensus 92 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~--~~~~---~--~~l~-----~~~~~~~~iiit 159 (769)
..........+. ....-+++||+++.... ...+ . ..+. ........||+|
T Consensus 565 ---------------~~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 565 ---------------STSGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp ---------------CCC---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred ---------------ccccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 000000111111 11234899999965321 1111 0 0010 011235578888
Q ss_pred cCch-----------------hhhcccCCCceEEeecCCHHHHHHHHHHHh
Q 039535 160 TRFF-----------------DVCGSMEAHRTFEVACLSEKDAWELFQEKV 193 (769)
Q Consensus 160 tr~~-----------------~~~~~~~~~~~~~l~~l~~~e~~~l~~~~~ 193 (769)
|... .+...+ ...+.+.+++.++..+++...+
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~Rl--~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFINRI--DEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHTTS--SEEEECC--CHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHhhC--CeEEecCCCCHHHHHHHHHHHH
Confidence 8621 122222 3589999999999998887755
No 235
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.55 E-value=0.0028 Score=66.51 Aligned_cols=103 Identities=8% Similarity=0.051 Sum_probs=71.3
Q ss_pred CCCCCCCCceEEEeecccchhcccCcccccCCcccEEEeeccCccccccCC-ccccCCCCCCEEeccCCCCCccchhhhc
Q 039535 397 SEVPTCPHLLTLFLDFNRELMMIAGGYFQFMPSLKVLKISNIGYFNVLKLP-LGMSKLGSLELLDISHSSIEELPEELKL 475 (769)
Q Consensus 397 ~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~ 475 (769)
+++....+|+.+.+.. .+..|+..+|.+|.+|+.+++..+ +..+. ..+.++ +|+.+.+..+ ++.++.....
T Consensus 40 ~~~~~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~~----v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~ 111 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAST----VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQ 111 (379)
T ss_dssp TTGGGGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECTT----CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTT
T ss_pred cccccccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCCc----ceEechhhhcCC-CCceEECCce-eeEeccceec
Confidence 4456677899999863 388999999999999999999753 44554 345555 6888877644 6666655444
Q ss_pred CCCCceeeccCCCcccccchHHhcCCCcCcEEEee
Q 039535 476 LVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMF 510 (769)
Q Consensus 476 l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~ 510 (769)
..+|+.+.+.++ +..+...++.++ +|+.+.+.
T Consensus 112 ~~~L~~i~lp~~--~~~i~~~~F~~~-~l~~~~~~ 143 (379)
T 4h09_A 112 GTDLDDFEFPGA--TTEIGNYIFYNS-SVKRIVIP 143 (379)
T ss_dssp TCCCSEEECCTT--CCEECTTTTTTC-CCCEEEEC
T ss_pred cCCcccccCCCc--cccccccccccc-eeeeeecc
Confidence 458999999765 455655545554 56666554
No 236
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.53 E-value=2.6e-05 Score=76.56 Aligned_cols=110 Identities=15% Similarity=0.105 Sum_probs=74.0
Q ss_pred cccCCcccE--EEeeccCccccccCCc----cccCCCCCCEEeccCCCCCccc---hhhhcCCCCceeeccCCCcccccc
Q 039535 424 FQFMPSLKV--LKISNIGYFNVLKLPL----GMSKLGSLELLDISHSSIEELP---EELKLLVNLKCLNLRWTDVLNKIP 494 (769)
Q Consensus 424 ~~~l~~L~~--L~l~~~~~~~~~~l~~----~~~~l~~L~~L~l~~~~i~~lp---~~~~~l~~L~~L~l~~~~~l~~lp 494 (769)
|...+.|+. ++++.| ....++. ...++++|++|+|++|+|+.++ ..+..+++|+.|+|++|. +..+.
T Consensus 137 l~~dp~L~~~~l~l~~N---~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~ 212 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLN---RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER 212 (267)
T ss_dssp GGGCHHHHHTTCCCCTT---SHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG
T ss_pred cCCCcchhhcCccccCC---HHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCch
Confidence 555566665 556665 3333332 1246889999999999998654 567789999999999997 55553
Q ss_pred hHHhcCCC--cCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEE
Q 039535 495 RQLISNLS--RVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLE 547 (769)
Q Consensus 495 ~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~ 547 (769)
. +..+. +|++|++.+|++..- ++.........+..+|+|+.|+
T Consensus 213 ~--l~~l~~l~L~~L~L~~Npl~~~--------~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 213 E--LDKIKGLKLEELWLDGNSLCDT--------FRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp G--GGGGTTSCCSEEECTTSTTGGG--------CSSHHHHHHHHHHHCTTCCEES
T ss_pred h--hhhcccCCcceEEccCCcCccc--------cCcchhHHHHHHHHCcccCeEC
Confidence 3 44444 999999999997630 0000122345677888888885
No 237
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.53 E-value=1.5e-05 Score=71.25 Aligned_cols=54 Identities=22% Similarity=0.225 Sum_probs=34.7
Q ss_pred ccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEec
Q 039535 23 LVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVS 82 (769)
Q Consensus 23 ~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~ 82 (769)
++|..++.-. .+.+-....++|+|++|+|||||++.++..... ....+++++..
T Consensus 20 ~~g~n~~~~~---~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~---~g~~~~~~~~~ 73 (149)
T 2kjq_A 20 LGTENAELVY---VLRHKHGQFIYVWGEEGAGKSHLLQAWVAQALE---AGKNAAYIDAA 73 (149)
T ss_dssp CSCCTHHHHH---HCCCCCCSEEEEESSSTTTTCHHHHHHHHHHHT---TTCCEEEEETT
T ss_pred CcCccHHHHH---HHHhcCCCEEEEECCCCCCHHHHHHHHHHHHHh---cCCcEEEEcHH
Confidence 3455544333 332224468899999999999999999998832 12235666543
No 238
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.51 E-value=0.0012 Score=70.90 Aligned_cols=201 Identities=18% Similarity=0.152 Sum_probs=107.5
Q ss_pred CCccccchHHHHHHHHHHhhc--C----------CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCC
Q 039535 19 TERTLVGLQSQLEQVWRCLIE--E----------SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPR 86 (769)
Q Consensus 19 ~~~~~vgR~~~~~~l~~~l~~--~----------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~ 86 (769)
.-++++|.+..+.++.+.... . -.+-+.|+|++|+|||+||+.++... . ...+.++.+.-..
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~---~---~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---R---VPFITASGSDFVE 102 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT---T---CCEEEEEGGGGTS
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---C---CCEEEEehhHHHH
Confidence 346799999888877766431 1 12348899999999999999999887 2 2234444322100
Q ss_pred HHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc-cceEEEEEcccccccc----------------cccccccCCC-
Q 039535 87 LEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSLR-EKRIVLLLDDIWERLD----------------LTKVGVPLPG- 148 (769)
Q Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~llvlDd~~~~~~----------------~~~~~~~l~~- 148 (769)
. ........+..+++... ..+.++++|+++.... +..+...+.+
T Consensus 103 ~------------------~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 103 M------------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp S------------------CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred h------------------hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 0 00011112222222222 2457999999964210 1112111211
Q ss_pred CCCCCcEEEEEcCchhhhc-----ccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcc-hHH
Q 039535 149 PKNTTSKVVFTTRFFDVCG-----SMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLP-LAL 222 (769)
Q Consensus 149 ~~~~~~~iiittr~~~~~~-----~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-lai 222 (769)
.......++.+|..+.... .......+.++..+.++-.+++..++.......+. ....++..+.|+. .-+
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv----~l~~lA~~t~G~~gadL 240 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV----DLALLAKRTPGFVGADL 240 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS----TTHHHHTTSCSCCHHHH
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH----HHHHHHHhcCCCCHHHH
Confidence 1123445666666554422 11234678999999999999998776433222221 1345777777766 333
Q ss_pred HHH----HHHh-cC---CCCHHHHHHHHHHHhc
Q 039535 223 VTI----GRAM-AS---KKTAEEWRHAIEELGR 247 (769)
Q Consensus 223 ~~~----~~~l-~~---~~~~~~~~~~l~~l~~ 247 (769)
..+ +..- +. .-+.+++..+++....
T Consensus 241 ~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~ 273 (499)
T 2dhr_A 241 ENLLNEAALLAAREGRRKITMKDLEEAADRVMM 273 (499)
T ss_dssp HHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhc
Confidence 322 2111 11 1255677776666543
No 239
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.45 E-value=0.0021 Score=63.75 Aligned_cols=150 Identities=15% Similarity=0.111 Sum_probs=83.8
Q ss_pred ccccchHHHHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 21 RTLVGLQSQLEQVWRCLI----E---------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~----~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
.++.|-++..+.+.+.+. . .-.+-++|+||+|+||||||+.++... .. ..+.+....-..
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~---~~---~~i~i~g~~l~~- 82 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES---GL---NFISVKGPELLN- 82 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEEETTTTCS-
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc---CC---CEEEEEcHHHHh-
Confidence 567888888887776542 1 112238999999999999999999986 11 344444221100
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEcccccccc---------c----ccccccCCC-CCCC
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERLD---------L----TKVGVPLPG-PKNT 152 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~~---------~----~~~~~~l~~-~~~~ 152 (769)
.........+..+.+.. ...+.++++|+++.... . ..+...+.+ ....
T Consensus 83 -----------------~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~ 145 (274)
T 2x8a_A 83 -----------------MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145 (274)
T ss_dssp -----------------STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT
T ss_pred -----------------hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC
Confidence 00111122334444443 34578999999964210 0 011111211 1122
Q ss_pred CcEEEEEcCchhhhcc-----cCCCceEEeecCCHHHHHHHHHHHhc
Q 039535 153 TSKVVFTTRFFDVCGS-----MEAHRTFEVACLSEKDAWELFQEKVG 194 (769)
Q Consensus 153 ~~~iiittr~~~~~~~-----~~~~~~~~l~~l~~~e~~~l~~~~~~ 194 (769)
...++.+|..+..... -.-...+.++..+.++-.+++.....
T Consensus 146 ~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp CEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 3455556665544221 13356788999999999999988764
No 240
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.33 E-value=0.00093 Score=77.05 Aligned_cols=169 Identities=18% Similarity=0.198 Sum_probs=95.6
Q ss_pred ccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 21 RTLVGLQSQLEQVWRCLIE-------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
++++|.+..++++.+++.. .....|.|+|++|+||||||+.++... .. ..+.++...
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~---~~i~v~~~~---- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GA---FFFLINGPE---- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TC---EEEEEEHHH----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CC---cEEEEEchH----
Confidence 6789999999999888742 234578999999999999999999886 22 223343211
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEcccccccc----------------cccccccCCCCC
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERLD----------------LTKVGVPLPGPK 150 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~~----------------~~~~~~~l~~~~ 150 (769)
+. .. ...........+++.. ...+.++++|+++.... +..+..... .
T Consensus 274 ------l~---~~-----~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~--~ 337 (806)
T 1ypw_A 274 ------IM---SK-----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK--Q 337 (806)
T ss_dssp ------HS---SS-----STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC--T
T ss_pred ------hh---hh-----hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc--c
Confidence 10 00 1112223333333333 45678999999953211 111111111 1
Q ss_pred CCCcEEEEEcCchhhhc-cc----CCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcc
Q 039535 151 NTTSKVVFTTRFFDVCG-SM----EAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLP 219 (769)
Q Consensus 151 ~~~~~iiittr~~~~~~-~~----~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 219 (769)
.....+|.||....... .+ .-...+.+...+.++-.+++...........+.. ...++..+.|..
T Consensus 338 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~----l~~la~~t~g~~ 407 (806)
T 1ypw_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp TSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCC----THHHHHSCSSCC
T ss_pred cccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccch----hHHHHHhhcCcc
Confidence 23456666666543221 11 1234578888999999999987765443222211 234555555544
No 241
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.06 E-value=0.00023 Score=65.53 Aligned_cols=117 Identities=21% Similarity=0.175 Sum_probs=64.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC---CCHHHHHHHHHH---HcCCCCCCCCCc-------
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD---PRLEKIQEDIGK---RIGLVDDSWKSK------- 108 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~---~~~~~~~~~l~~---~l~~~~~~~~~~------- 108 (769)
.+.|.|++..|.||||.|...+.+. ..+...+.++.+-.. .+...+++.+.- +++. ...+...
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA---~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~-gf~~~~~~~~~~~~ 103 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARA---VGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMAT-GFTWETQNREADTA 103 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHH---HHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCT-TCCCCGGGHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEccc-ccccCCCCcHHHHH
Confidence 4577788888899999999998887 444556677755442 222333333310 0010 1111111
Q ss_pred cHHHHHHHHHHHhccceE-EEEEccccc-----ccccccccccCCCCCCCCcEEEEEcCch
Q 039535 109 SVEEKALDIFRSLREKRI-VLLLDDIWE-----RLDLTKVGVPLPGPKNTTSKVVFTTRFF 163 (769)
Q Consensus 109 ~~~~~~~~l~~~l~~~~~-llvlDd~~~-----~~~~~~~~~~l~~~~~~~~~iiittr~~ 163 (769)
..........+.+.+.+| +||||++-. .-..+.+...+. .......||+|+|..
T Consensus 104 ~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~-~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 104 ACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALN-ARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHH-TSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHH-hCcCCCEEEEECCCC
Confidence 122234445555655555 999999932 122233333333 333467899999975
No 242
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.06 E-value=0.00074 Score=78.89 Aligned_cols=46 Identities=24% Similarity=0.366 Sum_probs=38.3
Q ss_pred ccccchHHHHHHHHHHhhcC---------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQSQLEQVWRCLIEE---------SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..++|++..++.+...+... ....+.|+|++|+|||++|+.+++..
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999998887531 12578999999999999999999987
No 243
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.03 E-value=0.00079 Score=68.14 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=34.3
Q ss_pred Cccccc----hHHHHHHHHHHhhcC---CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 20 ERTLVG----LQSQLEQVWRCLIEE---SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 20 ~~~~vg----R~~~~~~l~~~l~~~---~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
-++|++ +...++.+.+++... ....+.|+|++|+|||+||..+++..
T Consensus 123 fd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 123 LSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp GGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 355664 444555555666531 24678899999999999999999987
No 244
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.01 E-value=0.00025 Score=67.51 Aligned_cols=115 Identities=17% Similarity=-0.035 Sum_probs=62.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRS 120 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 120 (769)
...+++++|++|+||||++..++.++. .+...++.++..... . ....++++++............+....+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~---~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLE---YADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH---HTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 346889999999999999999999882 222234444433321 1 2224455555432221112333444444444
Q ss_pred hccc-eEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCchhh
Q 039535 121 LREK-RIVLLLDDIWER--LDLTKVGVPLPGPKNTTSKVVFTTRFFDV 165 (769)
Q Consensus 121 l~~~-~~llvlDd~~~~--~~~~~~~~~l~~~~~~~~~iiittr~~~~ 165 (769)
..+. .-+||+|+++.. +.++.+. .+. ..+..||+|.+..++
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~-~L~---~~gi~Vil~Gl~~df 128 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVAN-ILA---ENGFVVIISGLDKNF 128 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHH-HHH---HTTCEEEEECCSBCT
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHH-HHH---hCCCeEEEEeccccc
Confidence 4333 449999999642 2222221 121 125778888885543
No 245
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.99 E-value=0.0011 Score=76.71 Aligned_cols=46 Identities=20% Similarity=0.334 Sum_probs=38.2
Q ss_pred ccccchHHHHHHHHHHhhc---C------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQSQLEQVWRCLIE---E------SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~---~------~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..++|.+..++.+...+.. + ....+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4589999999998887752 1 22478999999999999999999987
No 246
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.94 E-value=0.00078 Score=66.82 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=41.4
Q ss_pred ccccchHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC
Q 039535 21 RTLVGLQSQLEQVWRCLIE--ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK 83 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~ 83 (769)
+.+||++..+.++.+.+.. .....|.|+|++|+|||++|+.+++... ......+.++++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~---~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS---RWQGPFISLNCAA 67 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST---TTTSCEEEEEGGG
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC---ccCCCeEEEecCC
Confidence 4589999999998877753 3345788999999999999999998862 2222345556554
No 247
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.94 E-value=0.003 Score=62.59 Aligned_cols=86 Identities=12% Similarity=0.154 Sum_probs=56.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCC---CCCccHHHH-HHHHH
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDS---WKSKSVEEK-ALDIF 118 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~-~~~l~ 118 (769)
+++.|+|++|+|||||+.+++...++ ......++|++........ .+++++...++ ..+.+.++. ...+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 37899999999999999999888742 2224578999887776653 36667654322 122345554 33322
Q ss_pred HH--h-ccceEEEEEcccc
Q 039535 119 RS--L-REKRIVLLLDDIW 134 (769)
Q Consensus 119 ~~--l-~~~~~llvlDd~~ 134 (769)
.. + ++.+-++|+|-+.
T Consensus 103 ~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHTCCTTCCEEEEEECST
T ss_pred HHHHhhccCceEEEEeccc
Confidence 22 2 4467899999984
No 248
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.93 E-value=0.00042 Score=68.98 Aligned_cols=70 Identities=20% Similarity=0.280 Sum_probs=45.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL 121 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l 121 (769)
.+++.|+|++|+|||+||.+++... .. .+.|++...... +.. ...+.+.....+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~---G~---~VlyIs~~~eE~-----------v~~-----~~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL---GG---KDKYATVRFGEP-----------LSG-----YNTDFNVFVDDIARAM 180 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH---HT---TSCCEEEEBSCS-----------STT-----CBCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC---CC---CEEEEEecchhh-----------hhh-----hhcCHHHHHHHHHHHH
Confidence 3567899999999999999998762 11 234555511111 000 1144566666677777
Q ss_pred ccceEEEEEcccc
Q 039535 122 REKRIVLLLDDIW 134 (769)
Q Consensus 122 ~~~~~llvlDd~~ 134 (769)
...+ ++|+|++.
T Consensus 181 ~~~~-LLVIDsI~ 192 (331)
T 2vhj_A 181 LQHR-VIVIDSLK 192 (331)
T ss_dssp HHCS-EEEEECCT
T ss_pred hhCC-EEEEeccc
Confidence 6666 99999984
No 249
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.93 E-value=0.0058 Score=63.06 Aligned_cols=164 Identities=12% Similarity=-0.076 Sum_probs=98.1
Q ss_pred HhhcCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHH
Q 039535 36 CLIEESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKAL 115 (769)
Q Consensus 36 ~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 115 (769)
.+.+.-.++..++|+.|.||++.+..+++.... ..+.....+......+..++...+..
T Consensus 12 ~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~------------------- 70 (343)
T 1jr3_D 12 QLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAA--QGFEEHHTFSIDPNTDWNAIFSLCQA------------------- 70 (343)
T ss_dssp HHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHH--HTCCEEEEEECCTTCCHHHHHHHHHH-------------------
T ss_pred HHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHh--CCCCeeEEEEecCCCCHHHHHHHhcC-------------------
Confidence 333244678999999999999999999888721 22321111122222333333222211
Q ss_pred HHHHHhccceEEEEEccccc-c--cccccccccCCCCCCCCcEEEEEcCc-------hhhhcc-cCCCceEEeecCCHHH
Q 039535 116 DIFRSLREKRIVLLLDDIWE-R--LDLTKVGVPLPGPKNTTSKVVFTTRF-------FDVCGS-MEAHRTFEVACLSEKD 184 (769)
Q Consensus 116 ~l~~~l~~~~~llvlDd~~~-~--~~~~~~~~~l~~~~~~~~~iiittr~-------~~~~~~-~~~~~~~~l~~l~~~e 184 (769)
.-+-+.+-++|+|+++. . .....+...+. ....++.+|+++.. ..+... ......++..+++.++
T Consensus 71 ---~plf~~~kvvii~~~~~kl~~~~~~aLl~~le-~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~ 146 (343)
T 1jr3_D 71 ---MSLFASRQTLLLLLPENGPNAAINEQLLTLTG-LLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQ 146 (343)
T ss_dssp ---HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHT-TCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTH
T ss_pred ---cCCccCCeEEEEECCCCCCChHHHHHHHHHHh-cCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHH
Confidence 11234566888899865 2 33444444444 33346666665532 122222 2345789999999999
Q ss_pred HHHHHHHHhccccCCCchhHHHHHHHHHHHhCCcchHHHHHHH
Q 039535 185 AWELFQEKVGEETLKSDHDIAELAQTVAKKCGGLPLALVTIGR 227 (769)
Q Consensus 185 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 227 (769)
..+++.+.+...+...+ .+.++.+++.++|....+.....
T Consensus 147 l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~gdl~~~~~ele 186 (343)
T 1jr3_D 147 LPRWVAARAKQLNLELD---DAANQVLCYCYEGNLLALAQALE 186 (343)
T ss_dssp HHHHHHHHHHHTTCEEC---HHHHHHHHHSSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCC---HHHHHHHHHHhchHHHHHHHHHH
Confidence 99999888765443333 35677899999998887766544
No 250
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.93 E-value=0.0031 Score=60.36 Aligned_cols=45 Identities=22% Similarity=0.209 Sum_probs=33.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQ 91 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 91 (769)
...+++|+|++|+|||||+..++. . . ...++|++.........+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~---~--~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L---S--GKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H---H--CSEEEEEESSCCCCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H---c--CCcEEEEECCCCCCHHHHH
Confidence 446899999999999999999988 2 1 2467888776644554443
No 251
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.88 E-value=0.0026 Score=72.08 Aligned_cols=170 Identities=16% Similarity=0.217 Sum_probs=82.0
Q ss_pred ccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 21 RTLVGLQSQLEQVWRCLIE-------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
.+..|-++..+++.+.+.- ...+-+.++||+|+|||.+|++++.+. .. -++.+. .
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~-----~f~~v~----~ 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QA-----NFISIK----G 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TC-----EEEECC----H
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CC-----ceEEec----c
Confidence 5667888888887766531 123457899999999999999999998 21 122221 1
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEcccccccc----------------cccccccCCC-C
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERLD----------------LTKVGVPLPG-P 149 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~~----------------~~~~~~~l~~-~ 149 (769)
. .++... .... +..+..+++.- ...+.+|+||++|.... ...+...+.+ .
T Consensus 545 ~----~l~s~~-------vGes-e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 545 P----ELLTMW-------FGES-EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp H----HHHTTT-------CSSC-HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred c----hhhccc-------cchH-HHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 1 222221 1122 33445555555 44689999999974210 1111111211 1
Q ss_pred CCCCcEEEEEcCchhh-----hcccCCCceEEeecCCHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhCCc
Q 039535 150 KNTTSKVVFTTRFFDV-----CGSMEAHRTFEVACLSEKDAWELFQEKVGEETLKSDHDIAELAQTVAKKCGGL 218 (769)
Q Consensus 150 ~~~~~~iiittr~~~~-----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 218 (769)
...+..||.||..+.. ...-+-+..+.++..+.++-.++|..+........+-+ ...+++.+.|.
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~d----l~~la~~t~g~ 682 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGF 682 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC-----------------
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHhCCCC
Confidence 2234444445543322 22113356788888888888888877765444332322 33455566554
No 252
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.86 E-value=0.0022 Score=65.58 Aligned_cols=86 Identities=16% Similarity=0.155 Sum_probs=55.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCC---CCCccHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDS---WKSKSVEEKALDI 117 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~l 117 (769)
...++.|+|++|+||||||.+++...+. ....++|++.....+.. .+++++..... ....+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~---~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK---MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 4568999999999999999999988732 22357888776655543 44555543211 1234555555555
Q ss_pred HHHhc-cceEEEEEcccc
Q 039535 118 FRSLR-EKRIVLLLDDIW 134 (769)
Q Consensus 118 ~~~l~-~~~~llvlDd~~ 134 (769)
....+ ...-++|+|.+.
T Consensus 132 ~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHHTSCCSEEEEECTT
T ss_pred HHHhhhcCCCeEEehHhh
Confidence 44443 345588889874
No 253
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.84 E-value=0.0038 Score=60.79 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=38.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhcc---CCCCEEEEEEecCCCCHHHHHHHHHHHcCC
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESR---TNFDFVIWVVVSKDPRLEKIQEDIGKRIGL 100 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~ 100 (769)
...++.|+|++|+|||||+..++....... .....++|++.........+ .++++.++.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~ 84 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGL 84 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCC
Confidence 346899999999999999999988641111 12457888887664444433 334445543
No 254
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.75 E-value=0.011 Score=60.66 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=41.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccC---CCCEEEEEEecCCCCHHHHHHHHHHHcCC
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRT---NFDFVIWVVVSKDPRLEKIQEDIGKRIGL 100 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~---~~~~~~w~~~~~~~~~~~~~~~l~~~l~~ 100 (769)
...++.|+|++|+|||+||.+++...+.... ....++|++.....+...+.+ ++..++.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~ 182 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNV 182 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 4568999999999999999999887522111 345789998877666655543 3445443
No 255
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.73 E-value=0.0007 Score=70.31 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=36.4
Q ss_pred CccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 20 ERTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 20 ~~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
-++++|.+..++.+.........+.+.|+|++|+|||++|+.+++..
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred chhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 36789999877665544433333458899999999999999999987
No 256
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.62 E-value=0.0072 Score=61.65 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=40.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhcc---CCCCEEEEEEecCCCCHHHHHHHHHHHcCC
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESR---TNFDFVIWVVVSKDPRLEKIQEDIGKRIGL 100 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~ 100 (769)
...++.|+|++|+|||+||.+++...+... .....++|++.....+...+. .+++.++.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~ 167 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGL 167 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCC
Confidence 346899999999999999999988752211 113578999887766565554 34455543
No 257
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.58 E-value=0.005 Score=63.46 Aligned_cols=86 Identities=17% Similarity=0.155 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCC---CCCccHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDS---WKSKSVEEKALDI 117 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~l 117 (769)
...++.|+|++|+|||+||.+++..... ....++|++.....+.. .+++++..... ..+.+.++....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 3458899999999999999999988732 23468899887765543 24444442211 0123455555555
Q ss_pred HHHhcc-ceEEEEEcccc
Q 039535 118 FRSLRE-KRIVLLLDDIW 134 (769)
Q Consensus 118 ~~~l~~-~~~llvlDd~~ 134 (769)
....+. ..-+||+|.+.
T Consensus 145 ~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHHTTTCCSEEEEECTT
T ss_pred HHHHhcCCCCEEEEeChH
Confidence 544433 34588999984
No 258
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.49 E-value=0.0059 Score=62.70 Aligned_cols=86 Identities=19% Similarity=0.217 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCC---CCCccHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDS---WKSKSVEEKALDI 117 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~l 117 (769)
...++.|+|++|+||||||.+++....+ ....++|++.....+.. .+++++..... ..+.+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 4568999999999999999999988732 23467888877655543 24455533211 0123445554444
Q ss_pred HHHhc-cceEEEEEcccc
Q 039535 118 FRSLR-EKRIVLLLDDIW 134 (769)
Q Consensus 118 ~~~l~-~~~~llvlDd~~ 134 (769)
....+ .+.-++|+|.+.
T Consensus 132 ~~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHHTTTCCSEEEEECGG
T ss_pred HHHHhcCCCCEEEEcChH
Confidence 44433 345689999984
No 259
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.48 E-value=0.0055 Score=62.97 Aligned_cols=86 Identities=15% Similarity=0.140 Sum_probs=52.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCC---CCccHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSW---KSKSVEEKALDI 117 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~l 117 (769)
..+++.|+|++|+||||||.+++....+ ....++|++.....+.. .+..++...... .+.+.++....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHH
Confidence 4468999999999999999999988732 22368888887665543 234454322110 112334444333
Q ss_pred HHHh-ccceEEEEEcccc
Q 039535 118 FRSL-REKRIVLLLDDIW 134 (769)
Q Consensus 118 ~~~l-~~~~~llvlDd~~ 134 (769)
.... ....-+||+|.+.
T Consensus 134 ~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHHTCCSEEEEECGG
T ss_pred HHHHhccCCCEEEEcCHH
Confidence 3332 2344588899873
No 260
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.44 E-value=0.0018 Score=65.77 Aligned_cols=51 Identities=14% Similarity=0.083 Sum_probs=32.8
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC
Q 039535 33 VWRCLIE-ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD 84 (769)
Q Consensus 33 l~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~ 84 (769)
.++.+.. .+...++|+|++|+|||||++.+++...+....+. ++++-+++.
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER 215 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDER 215 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSC
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCC
Confidence 3444433 45568999999999999999998887632222233 334555543
No 261
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.43 E-value=0.0082 Score=63.21 Aligned_cols=52 Identities=23% Similarity=0.425 Sum_probs=34.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC-CCHHHHHHHHH
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD-PRLEKIQEDIG 95 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~l~ 95 (769)
.+.++|+|++|+|||||+..++..... . .....+++.++.. .+..++++.+.
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~-~-~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQ-E-HGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHH-H-TCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhh-c-cCcEEEEeeeccCchHHHHHHHHhh
Confidence 346889999999999999999887622 2 2233455555554 34555555554
No 262
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.40 E-value=0.0037 Score=58.83 Aligned_cols=42 Identities=19% Similarity=0.449 Sum_probs=35.0
Q ss_pred chHHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 25 GLQSQLEQVWRCLIE---ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 25 gR~~~~~~l~~~l~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.|++.++.+.+.+.+ ....+++|.|++|+||||+++.++..+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467788888888764 345789999999999999999998877
No 263
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.38 E-value=0.0024 Score=68.70 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=38.7
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+.+||++..++.+...+..++ .|.|+|++|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHH
Confidence 568999999999988876443 78899999999999999999987
No 264
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.34 E-value=0.011 Score=60.19 Aligned_cols=59 Identities=17% Similarity=0.280 Sum_probs=40.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhcc---------CCC----CEEEEEEecCCCCHHHHHHHHHHHcCC
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESR---------TNF----DFVIWVVVSKDPRLEKIQEDIGKRIGL 100 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---------~~~----~~~~w~~~~~~~~~~~~~~~l~~~l~~ 100 (769)
...++.|+|++|+|||+||.+++...+... ... ..++|++.....+...+.+ +++.++.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~ 168 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGI 168 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 446899999999999999999987642111 111 5789998877666665554 3445543
No 265
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.23 E-value=0.022 Score=59.86 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..+|.++|++|+||||++..++..+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999888
No 266
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.19 E-value=0.021 Score=57.77 Aligned_cols=52 Identities=10% Similarity=0.046 Sum_probs=38.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKR 97 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 97 (769)
...++.|.|++|+||||+|.+++..... . ...++|++.. .....+...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~-~--g~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSD-N--DDVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHT-T--TCEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-c--CCeEEEEECC--CCHHHHHHHHHHH
Confidence 4468999999999999999999987622 2 2578887755 4566666666654
No 267
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.18 E-value=0.011 Score=55.96 Aligned_cols=27 Identities=33% Similarity=0.368 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+.++|+|.|+||+||||.|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999999987
No 268
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.12 E-value=0.011 Score=55.61 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+++|.||||+||+|.|+.+++++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47799999999999999999997
No 269
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.07 E-value=0.013 Score=56.42 Aligned_cols=38 Identities=34% Similarity=0.362 Sum_probs=28.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEec
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVS 82 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~ 82 (769)
..+++|.|++|+|||||+..++...... ...+.|+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~ 60 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTE 60 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEcc
Confidence 4589999999999999999999776321 2246666543
No 270
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.01 E-value=0.0059 Score=57.78 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 27 QSQLEQVWRCLIE--ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 27 ~~~~~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
++.+++|.+.+.+ ....+|+|.|++|+|||||++.++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 5 AALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456666666653 345789999999999999999999887
No 271
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.00 E-value=0.0056 Score=63.75 Aligned_cols=46 Identities=20% Similarity=0.175 Sum_probs=38.0
Q ss_pred ccccchHHHHHHHHHHhh-------------c--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQSQLEQVWRCLI-------------E--ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~-------------~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+.++|.+..++.+..++. . ...+.+.|+|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 15 DYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 346999999999988872 1 134568899999999999999999987
No 272
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.00 E-value=0.006 Score=63.87 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=37.6
Q ss_pred ccccchHHHHHHHHHHhh----c--------------------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQSQLEQVWRCLI----E--------------------------ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~----~--------------------------~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..++|.+..++.+..++. . .....+.|+|++|+|||++|+.+++..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 457999999999887772 0 123468899999999999999999987
No 273
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.99 E-value=0.028 Score=58.64 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=38.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhc---cCCCCEEEEEEecCCCCHHHHHHHHHHHcCC
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLES---RTNFDFVIWVVVSKDPRLEKIQEDIGKRIGL 100 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~ 100 (769)
...++.|+|++|+|||||+..++-..... ......++|++.........+ +.+++.++.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl 238 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGL 238 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCC
Confidence 34689999999999999999876443111 113457888887665444443 346666654
No 274
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.85 E-value=0.0083 Score=55.36 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 27 QSQLEQVWRCLIE-ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 27 ~~~~~~l~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..-+..+..++.+ .+...+.|+||+|+|||++|.++++.+
T Consensus 42 ~~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 42 ITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3445555565543 233478999999999999999999987
No 275
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.82 E-value=0.0049 Score=56.67 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+|+|+|++|+||||+|+.+++++
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999999987
No 276
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.75 E-value=0.042 Score=52.65 Aligned_cols=58 Identities=24% Similarity=0.282 Sum_probs=36.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhc--cC-CCCEEEEEEecCCCCHHHHHHHHHHHcC
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLES--RT-NFDFVIWVVVSKDPRLEKIQEDIGKRIG 99 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--~~-~~~~~~w~~~~~~~~~~~~~~~l~~~l~ 99 (769)
...+++|.|++|+|||||++.++...... .. ....++|+......... -...+.+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~-~i~~~~~~~~ 84 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE-RIREIAQNRG 84 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH-HHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH-HHHHHHHHcC
Confidence 44689999999999999999998754111 11 23467887755433322 2334444443
No 277
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.75 E-value=0.034 Score=56.37 Aligned_cols=53 Identities=13% Similarity=0.104 Sum_probs=38.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHc
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRI 98 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l 98 (769)
...+++|.|++|+||||+|..++..... ....++|++.. .....+...++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlE--ms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLE--MSAEQLALRALSDL 97 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCC--CCHHHHHHHHHHHh
Confidence 4458999999999999999999988732 33467777653 44566666665443
No 278
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.70 E-value=0.0017 Score=74.79 Aligned_cols=151 Identities=17% Similarity=0.216 Sum_probs=81.6
Q ss_pred ccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCH
Q 039535 21 RTLVGLQSQLEQVWRCLIE-------------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRL 87 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (769)
.+++|.+...+.+.+.+.- ...+.+.++|++|+|||+||+.++... ...|- .++.+.-.
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i---~v~~~~l~-- 548 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFI---SIKGPELL-- 548 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH---TCCCC---CCCCSSST--
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh---CCCEE---EEechHhh--
Confidence 5678888888888777641 123468899999999999999999987 22221 11111100
Q ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccceEEEEEccccccc----------------ccccccccCCCC-
Q 039535 88 EKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRSL-REKRIVLLLDDIWERL----------------DLTKVGVPLPGP- 149 (769)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~----------------~~~~~~~~l~~~- 149 (769)
....... ...+..+++.. ...+.++++|+++... ....+...+...
T Consensus 549 ---------------~~~~g~~-~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~ 612 (806)
T 1ypw_A 549 ---------------TMWFGES-EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp ---------------TCCTTTS-SHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC---
T ss_pred ---------------hhhcCcc-HHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc
Confidence 0001111 12223333333 2245789999986420 012222223211
Q ss_pred CCCCcEEEEEcCchhh-hccc----CCCceEEeecCCHHHHHHHHHHHhcc
Q 039535 150 KNTTSKVVFTTRFFDV-CGSM----EAHRTFEVACLSEKDAWELFQEKVGE 195 (769)
Q Consensus 150 ~~~~~~iiittr~~~~-~~~~----~~~~~~~l~~l~~~e~~~l~~~~~~~ 195 (769)
...+..||.||..... -..+ .-...+.++..+.++..+++..+...
T Consensus 613 ~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~ 663 (806)
T 1ypw_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp ---CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSC
T ss_pred ccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhcc
Confidence 1223445555553322 1111 12346788889999999999887744
No 279
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.70 E-value=0.0057 Score=55.80 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+|+|.|++|+||||+|+.+++++
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999887
No 280
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.59 E-value=0.039 Score=57.92 Aligned_cols=64 Identities=23% Similarity=0.410 Sum_probs=44.8
Q ss_pred HHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC-CCHHHHHHHHHHH
Q 039535 32 QVWRCLIE-ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD-PRLEKIQEDIGKR 97 (769)
Q Consensus 32 ~l~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~l~~~ 97 (769)
+.++.+.. ++...+.|.|++|+|||+|+..+++... +.+.+.++++-++.. .+..++.+.+...
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 34455543 4556889999999999999999998752 233456677766654 4667777777654
No 281
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.57 E-value=0.0089 Score=62.86 Aligned_cols=46 Identities=22% Similarity=0.236 Sum_probs=37.8
Q ss_pred ccccchHHHHHHHHHHhhc--------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQSQLEQVWRCLIE--------------ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~--------------~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
++++|.+...+.+..++.. -..+.+.++|++|+|||++|+.++..+
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 5689999999988777632 123568899999999999999999987
No 282
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.56 E-value=0.04 Score=56.54 Aligned_cols=57 Identities=23% Similarity=0.299 Sum_probs=36.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCC---CCEEEEEEecCCCCHHHHHHHHHHHc
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTN---FDFVIWVVVSKDPRLEKIQEDIGKRI 98 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~---~~~~~w~~~~~~~~~~~~~~~l~~~l 98 (769)
...++.|+|++|+|||||+..++...+..... ...++|++......... +..+++..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~ 189 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNR 189 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHc
Confidence 45689999999999999999998876211111 13558887655433333 33344443
No 283
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.54 E-value=0.067 Score=54.14 Aligned_cols=57 Identities=25% Similarity=0.244 Sum_probs=37.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC-CCHHHHHHHHHHHcCC
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD-PRLEKIQEDIGKRIGL 100 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~l~~~l~~ 100 (769)
...+++|+|+.|+||||+++.++..+.. ....+.+...... ....+-++...++++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~---~~g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN---HGFSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh---cCCEEEEEeecccccchHHHHHHHHHHcCc
Confidence 3568999999999999999999988732 2223555544332 2344455556666653
No 284
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.51 E-value=0.027 Score=56.38 Aligned_cols=89 Identities=17% Similarity=0.159 Sum_probs=49.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCC-CHHHHHHHHHHHcCCCCC-CCCCccHHHH-HHHHH
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDP-RLEKIQEDIGKRIGLVDD-SWKSKSVEEK-ALDIF 118 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~l~~~l~~~~~-~~~~~~~~~~-~~~l~ 118 (769)
..++.|+|++|+||||++..++..+.. ....+.++...... ...+-++.+.++.+.... .....+.... ...+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~---~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVD---EGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHh---cCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 468999999999999999999988832 22345666554332 112223445555443211 1112233332 22344
Q ss_pred HHhccceEEEEEccc
Q 039535 119 RSLREKRIVLLLDDI 133 (769)
Q Consensus 119 ~~l~~~~~llvlDd~ 133 (769)
..+....-++|+|..
T Consensus 181 ~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 181 HALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHTTCSEEEEEEC
T ss_pred HHHhcCCCEEEEECC
Confidence 434444447788876
No 285
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.51 E-value=0.0037 Score=64.29 Aligned_cols=112 Identities=13% Similarity=0.127 Sum_probs=58.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHH-HHHHHHHHHcCCCCCCCCCccHHHHHHHHH
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLE-KIQEDIGKRIGLVDDSWKSKSVEEKALDIF 118 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 118 (769)
...+.++|+|+.|+||||+++.++....... ...++.+. ...... .-...+..+.... ... ......+.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~--~~~i~t~e--d~~e~~~~~~~~~v~q~~~~---~~~---~~~~~~La 190 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTK--YHHILTIE--DPIEFVHESKKCLVNQREVH---RDT---LGFSEALR 190 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHC--CCEEEEEE--SSCCSCCCCSSSEEEEEEBT---TTB---SCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCC--CcEEEEcc--CcHHhhhhccccceeeeeec---ccc---CCHHHHHH
Confidence 4456999999999999999999988773211 12222221 111100 0000000000000 011 12233666
Q ss_pred HHhccceEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhh
Q 039535 119 RSLREKRIVLLLDDIWERLDLTKVGVPLPGPKNTTSKVVFTTRFFDV 165 (769)
Q Consensus 119 ~~l~~~~~llvlDd~~~~~~~~~~~~~l~~~~~~~~~iiittr~~~~ 165 (769)
..+...+=++++|+..+....+.+.... ..|..|++|+...+.
T Consensus 191 ~aL~~~PdvillDEp~d~e~~~~~~~~~----~~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 191 SALREDPDIILVGEMRDLETIRLALTAA----ETGHLVFGTLHTTSA 233 (356)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHHH----HTTCEEEEEESCSSH
T ss_pred HHhhhCcCEEecCCCCCHHHHHHHHHHH----hcCCEEEEEEccChH
Confidence 7777788899999996544433332221 235568888875443
No 286
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.50 E-value=0.0081 Score=56.36 Aligned_cols=26 Identities=38% Similarity=0.295 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....|+|+|++|+||||+++.+++.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 44689999999999999999999887
No 287
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.49 E-value=0.008 Score=55.62 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+.|+|+|++|+||||+|+.+++++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999987
No 288
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.47 E-value=0.011 Score=55.45 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....+++|.|++|+||||+++.++..+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999988
No 289
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.44 E-value=0.066 Score=53.44 Aligned_cols=87 Identities=14% Similarity=0.103 Sum_probs=48.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC-CCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD-PRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFR 119 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 119 (769)
+..+++|+|++|+||||++..++..+... ....+..+..... ....+.+.......+.... ...+....... ..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~--~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~~a-l~ 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLE--KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQQA-KE 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHHHH-HH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh--cCCEEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHHHH-HH
Confidence 35689999999999999999999888321 2234555654432 2334444455544443321 11222333222 23
Q ss_pred HhccceEEEEEccc
Q 039535 120 SLREKRIVLLLDDI 133 (769)
Q Consensus 120 ~l~~~~~llvlDd~ 133 (769)
.+ ...=++|+|-.
T Consensus 179 ~~-~~~dlvIiDT~ 191 (296)
T 2px0_A 179 LF-SEYDHVFVDTA 191 (296)
T ss_dssp HG-GGSSEEEEECC
T ss_pred Hh-cCCCEEEEeCC
Confidence 34 33446778854
No 290
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.39 E-value=0.031 Score=69.30 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=55.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCC---CCccHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSW---KSKSVEEKALDI 117 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~l 117 (769)
..+.|.|+||+|+|||+||.+++... ......++|+++....+... ++.++....+. .+...++....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea---~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH---HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 45689999999999999999999887 33445678887776655555 34444321111 122334444444
Q ss_pred HHHh-ccceEEEEEcccc
Q 039535 118 FRSL-REKRIVLLLDDIW 134 (769)
Q Consensus 118 ~~~l-~~~~~llvlDd~~ 134 (769)
.+.. ..+.-+||+|++.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 4443 3456799999994
No 291
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.38 E-value=0.019 Score=55.77 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=30.9
Q ss_pred chHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 25 GLQSQLEQVWRCLIE--ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 25 gR~~~~~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+....+.++...... .....|+|.|++|+||||+|+.+++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 10 STIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CHHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 444555555444432 355679999999999999999999886
No 292
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.37 E-value=0.019 Score=58.06 Aligned_cols=43 Identities=21% Similarity=0.221 Sum_probs=33.8
Q ss_pred cchHHHHHHHHHHhh----cCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 24 VGLQSQLEQVWRCLI----EESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 24 vgR~~~~~~l~~~l~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
|+-+...+++++.+. .+....++|+|++|+||||+++.++..+
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 555666777777664 3455678999999999999999998887
No 293
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.37 E-value=0.069 Score=55.96 Aligned_cols=39 Identities=21% Similarity=0.177 Sum_probs=29.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK 83 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~ 83 (769)
..++.++|++|+||||++..++..+. .....+..+....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~---~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLLVAADT 136 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEeeccc
Confidence 46888999999999999999998883 2233455555543
No 294
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.37 E-value=0.0094 Score=54.86 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.++++|+||+|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998876
No 295
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.37 E-value=0.0075 Score=55.44 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
|.|+|.||+|+|||||++++..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468899999999999999998876
No 296
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.30 E-value=0.016 Score=57.74 Aligned_cols=26 Identities=35% Similarity=0.266 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|.|++|+||||+|+.++.++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999998876
No 297
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.28 E-value=0.0082 Score=54.81 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+|+|+|++|+||||+++.++..+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999887
No 298
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.27 E-value=0.011 Score=54.42 Aligned_cols=22 Identities=32% Similarity=0.274 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINN 64 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~ 64 (769)
.+|+|.|++|+||||+|+.+++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999988
No 299
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.25 E-value=0.011 Score=54.94 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|.|++|+||||+++.++...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 44689999999999999999998764
No 300
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.24 E-value=0.012 Score=54.79 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...|+|.|++|+||||+++.+++.+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4678999999999999999999887
No 301
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.23 E-value=0.067 Score=53.36 Aligned_cols=89 Identities=19% Similarity=0.132 Sum_probs=51.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCC-HHHHHHHHHHHcCCCCCC-CCCccHHHHHHHHHH
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPR-LEKIQEDIGKRIGLVDDS-WKSKSVEEKALDIFR 119 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~l~~ 119 (769)
..+++++|++|+||||++..++..+.. ....+.+++...... ....++.+.+..+...-. ....+..+......+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~---~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK---KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH---TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 458889999999999999999988832 233566666554332 233344445554442111 122344445445555
Q ss_pred HhccceE-EEEEccc
Q 039535 120 SLREKRI-VLLLDDI 133 (769)
Q Consensus 120 ~l~~~~~-llvlDd~ 133 (769)
.++..++ ++|+|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 5542223 6777765
No 302
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.22 E-value=0.011 Score=55.78 Aligned_cols=26 Identities=31% Similarity=0.270 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|+||+|+||||+++.++..+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999999887
No 303
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.21 E-value=0.01 Score=54.26 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+|+|.|++|+||||+|+.+ +++
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 37899999999999999999 544
No 304
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.19 E-value=0.079 Score=55.58 Aligned_cols=26 Identities=35% Similarity=0.316 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFL 67 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 67 (769)
..+++++|++|+||||++..++..+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999998883
No 305
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.19 E-value=0.011 Score=54.98 Aligned_cols=24 Identities=33% Similarity=0.492 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..|+|.|++|+||||+|+.+++++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999988
No 306
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.16 E-value=0.012 Score=55.20 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|.|++|+||||+++.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999999876
No 307
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.15 E-value=0.046 Score=58.06 Aligned_cols=51 Identities=10% Similarity=0.055 Sum_probs=35.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGK 96 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 96 (769)
...++.|.|++|+|||++|.+++..... . ...++|++... +...+...+..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~-~--g~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSD-N--DDVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHH-T--TCEEEEECSSS--CTTHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHH-c--CCEEEEEECCC--CHHHHHHHHHH
Confidence 3458999999999999999999988732 2 34677776543 33444444443
No 308
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.15 E-value=0.01 Score=54.54 Aligned_cols=25 Identities=44% Similarity=0.361 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+.|+|+|++|+||||+++.+++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999887
No 309
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.14 E-value=0.024 Score=56.48 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFL 67 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 67 (769)
++..+|+|.|++|+||||||+.+...+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456899999999999999999988873
No 310
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.10 E-value=0.023 Score=54.34 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 26 LQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 26 R~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.++..+.+.+.+.......|+|+|.+|+|||||+.+++...
T Consensus 22 ~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 22 NKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34444555555544567889999999999999999999886
No 311
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.08 E-value=0.012 Score=57.39 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+++|.|++|+||||+|+.++.++
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999999887
No 312
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.07 E-value=0.012 Score=54.58 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..|+|.|++|+||||+++.+++++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999987
No 313
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.06 E-value=0.014 Score=53.98 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....++|.|++|+||||+++.++..+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45688999999999999999999988
No 314
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.06 E-value=0.021 Score=57.48 Aligned_cols=44 Identities=25% Similarity=0.262 Sum_probs=32.3
Q ss_pred ccchHHHHHHHHHHhhcC----CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 23 LVGLQSQLEQVWRCLIEE----SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 23 ~vgR~~~~~~l~~~l~~~----~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
++|....+..+...+.+. ...+++|.|++|+||||+++.+...+
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 355555566555555432 34589999999999999999988876
No 315
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.05 E-value=0.011 Score=55.72 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..+|+|.|++|+||||+|+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999887
No 316
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.04 E-value=0.013 Score=53.13 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..+|+|.|++|+||||+++.+++++
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999987
No 317
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.02 E-value=0.011 Score=55.66 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|.|++|+||||+++.++..+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44688999999999999999999886
No 318
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.00 E-value=0.014 Score=54.04 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..+.++|+||+|+|||||++.++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999999876
No 319
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.97 E-value=0.026 Score=62.94 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=38.8
Q ss_pred ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+++||.+..++.+...+..+ ..+.|+|++|+||||||+.++...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 56899999999888888644 488999999999999999999987
No 320
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.96 E-value=0.017 Score=52.86 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..+++|+|++|+||||+++.++..+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998875
No 321
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.96 E-value=0.013 Score=53.55 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.|+|.|++|+||||+|+.++.++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999987
No 322
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.94 E-value=0.03 Score=52.22 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.|+|.|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999987
No 323
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.92 E-value=0.17 Score=53.93 Aligned_cols=53 Identities=9% Similarity=-0.065 Sum_probs=37.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKR 97 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 97 (769)
...++.|.|++|+|||++|.+++..... .....++|++.. .+...+...+...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~--~~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL--KEGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEECC--CCHHHHHHHHHHH
Confidence 3458999999999999999999988732 123357777654 4456666666543
No 324
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.90 E-value=0.015 Score=54.22 Aligned_cols=26 Identities=35% Similarity=0.367 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+...|+|.|++|+||||+|+.+++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999887
No 325
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.89 E-value=0.016 Score=53.95 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...|+|.|++|+||||+|+.+++.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999886
No 326
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.87 E-value=0.022 Score=54.34 Aligned_cols=43 Identities=21% Similarity=0.229 Sum_probs=33.5
Q ss_pred cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 24 VGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 24 vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
-+.++..+++.+.+...+.+.++|+|.+|+|||||+.+++...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 12 AENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3445555666665555677899999999999999999999886
No 327
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.85 E-value=0.012 Score=54.34 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+|+|+|++|+||||+|+.+++++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999987
No 328
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.84 E-value=0.017 Score=53.37 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNK 65 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~ 65 (769)
...|+|+|++|+||||+++.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999988
No 329
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.83 E-value=0.19 Score=52.93 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhc---------CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC
Q 039535 28 SQLEQVWRCLIE---------ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK 83 (769)
Q Consensus 28 ~~~~~l~~~l~~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~ 83 (769)
-..+++.+.+.. ...++|.++|.+|+||||++..++..+.+ . ....+.-+++..
T Consensus 77 ~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~-~-~G~kVllvd~D~ 139 (433)
T 2xxa_A 77 IVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLRE-K-HKKKVLVVSADV 139 (433)
T ss_dssp HHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHH-T-SCCCEEEEECCC
T ss_pred HHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH-h-cCCeEEEEecCC
Confidence 344556666542 23568899999999999999999998832 2 123455566554
No 330
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.83 E-value=0.018 Score=54.07 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....|+|.|++|+||||+++.+++.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999886
No 331
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.80 E-value=0.017 Score=54.27 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..+++|+|+.|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4589999999999999999998875
No 332
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.79 E-value=0.018 Score=53.26 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..|+|.|++|+||||+++.+++.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999876
No 333
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.78 E-value=0.019 Score=54.42 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..|+|.|++|+||||+|+.+++.+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999988
No 334
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.76 E-value=0.022 Score=55.66 Aligned_cols=26 Identities=35% Similarity=0.337 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|.|++|+||||+|+.++..+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34678999999999999999999887
No 335
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.75 E-value=0.017 Score=54.06 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...|+|.|++|+||||+|+.+++++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999987
No 336
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.73 E-value=0.014 Score=53.98 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
++++|.||.|+|||||++.++...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999999876
No 337
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.70 E-value=0.012 Score=59.65 Aligned_cols=35 Identities=20% Similarity=0.129 Sum_probs=27.8
Q ss_pred HHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 32 QVWRCLIE-ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 32 ~l~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+.++.+.. ++...+.|.|++|+|||+|+..+++..
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 45555544 455688899999999999999999876
No 338
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.70 E-value=0.015 Score=53.01 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..|+|+|++|+||||+|+.+++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999987
No 339
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.69 E-value=0.057 Score=56.94 Aligned_cols=63 Identities=24% Similarity=0.378 Sum_probs=44.6
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC-CCHHHHHHHHHHH
Q 039535 33 VWRCLIE-ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD-PRLEKIQEDIGKR 97 (769)
Q Consensus 33 l~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~l~~~ 97 (769)
.++.+.. .+...++|.|.+|+|||+|+..+++... +.+.+.++++-++.. .+..++.+.+...
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 3444443 4556789999999999999999998852 233456677766654 5677778777754
No 340
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.66 E-value=0.02 Score=53.99 Aligned_cols=25 Identities=36% Similarity=0.323 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..+++|+|++|+||||+++.++...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998876
No 341
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.64 E-value=0.018 Score=54.04 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.|+|.|++|+||||+++.+++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58899999999999999999987
No 342
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.64 E-value=0.018 Score=55.20 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+|+|+|++|+||||+++.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999876
No 343
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.64 E-value=0.019 Score=54.65 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.|+|.|++|+||||+|+.+++++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999887
No 344
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.63 E-value=0.039 Score=51.28 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.|+|.|++|+||||+++.+++++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999987
No 345
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.63 E-value=0.014 Score=53.83 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=18.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...|+|.|++|+||||+|+.+++.+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999999886
No 346
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.62 E-value=0.02 Score=52.42 Aligned_cols=23 Identities=43% Similarity=0.548 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.++|+|+.|+|||||++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998876
No 347
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.60 E-value=0.033 Score=47.87 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=21.2
Q ss_pred cCCccccCCCCCCEEeccCCCCCccchh-hhcCCCCceeeccCCC
Q 039535 445 KLPLGMSKLGSLELLDISHSSIEELPEE-LKLLVNLKCLNLRWTD 488 (769)
Q Consensus 445 ~l~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~ 488 (769)
.+|..+. .+|++|+|++|.|+.+|.. +..+++|+.|+|.+|.
T Consensus 24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4444332 3455555555555555443 3445555555555554
No 348
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.59 E-value=0.077 Score=52.95 Aligned_cols=89 Identities=18% Similarity=0.166 Sum_probs=48.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHH-HHHHHHHHHcCCCCCC-CCCccHHHHHHHHHH
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLE-KIQEDIGKRIGLVDDS-WKSKSVEEKALDIFR 119 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~l~~~l~~~~~~-~~~~~~~~~~~~l~~ 119 (769)
..+++|+|++|+||||++..++..+.. ....+.++......... ..+..+....+...-. ....+..++.....+
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~---~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG---KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH---TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 468889999999999999999988832 22345666554432211 1223344444432110 012233344343344
Q ss_pred Hh-ccceEEEEEccc
Q 039535 120 SL-REKRIVLLLDDI 133 (769)
Q Consensus 120 ~l-~~~~~llvlDd~ 133 (769)
.. ....=++|+|..
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 43 234446778875
No 349
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.58 E-value=0.02 Score=51.78 Aligned_cols=23 Identities=26% Similarity=0.236 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.|+|.|++|+||||+|+.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999987
No 350
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.57 E-value=0.02 Score=53.73 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...|+|.|++|+||||+|+.+++.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999999999999887
No 351
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.56 E-value=0.021 Score=53.00 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..+|+|.|++|+||||+|+.+++.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999887
No 352
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.54 E-value=0.047 Score=46.83 Aligned_cols=55 Identities=24% Similarity=0.379 Sum_probs=31.4
Q ss_pred EEeccCCCCC--ccchhhhcCCCCceeeccCCCcccccchHHhcCCCcCcEEEeeccCCC
Q 039535 458 LLDISHSSIE--ELPEELKLLVNLKCLNLRWTDVLNKIPRQLISNLSRVRVLRMFATGYD 515 (769)
Q Consensus 458 ~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 515 (769)
.++-++++++ .+|..+ ..+|++|+|++|. +..+|.+++..+++|+.|++.+|...
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence 4555555555 555432 2356666666665 55566555566666666666666543
No 353
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.54 E-value=0.086 Score=67.78 Aligned_cols=138 Identities=20% Similarity=0.101 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHH-h
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRS-L 121 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~-l 121 (769)
+.|.++||+|+|||++|+.+.... .. .....++++...+...+.+.+-..+...... .+. +..- -
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~----~~-~~~~~infsa~ts~~~~~~~i~~~~~~~~~~-~g~--------~~~P~~ 1333 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS----SL-YDVVGINFSKDTTTEHILSALHRHTNYVTTS-KGL--------TLLPKS 1333 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC----SS-CEEEEEECCTTCCHHHHHHHHHHHBCCEEET-TTE--------EEEEBS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC----CC-CceEEEEeecCCCHHHHHHHHHHHhhhcccc-CCc--------cccCCC
Confidence 577899999999999998777654 12 2456677777777776666665554321000 000 0000 0
Q ss_pred ccceEEEEEcccccc--c---------cccccccc---CCCCCC-----CCcEEEEEcCchh------h-hcccCCCceE
Q 039535 122 REKRIVLLLDDIWER--L---------DLTKVGVP---LPGPKN-----TTSKVVFTTRFFD------V-CGSMEAHRTF 175 (769)
Q Consensus 122 ~~~~~llvlDd~~~~--~---------~~~~~~~~---l~~~~~-----~~~~iiittr~~~------~-~~~~~~~~~~ 175 (769)
.++++++++||++-. + -++++... ...... .+..+|.++.++. + .+..+....+
T Consensus 1334 ~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi 1413 (2695)
T 4akg_A 1334 DIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAIL 1413 (2695)
T ss_dssp SSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEE
T ss_pred CCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEE
Confidence 357889999997421 0 01111110 100000 1234555554432 1 1111234678
Q ss_pred EeecCCHHHHHHHHHHHhc
Q 039535 176 EVACLSEKDAWELFQEKVG 194 (769)
Q Consensus 176 ~l~~l~~~e~~~l~~~~~~ 194 (769)
.++..+.++...+|.....
T Consensus 1414 ~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1414 YLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp ECCCCTTTHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHH
Confidence 9999999999999887763
No 354
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.53 E-value=0.02 Score=54.46 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.|+|+|++|+||||+|+.+++++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 355
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.53 E-value=0.021 Score=55.52 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+...++|.|++|+||||+++.+++++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999876
No 356
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.52 E-value=0.03 Score=50.30 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..+++.|.|++|+|||||+..++..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999999988
No 357
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.51 E-value=0.023 Score=53.72 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|+|+.|+|||||++.++..+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999999876
No 358
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.48 E-value=0.023 Score=53.53 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+|+|+|++|+||||+++.++..+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998875
No 359
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.48 E-value=0.022 Score=52.74 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNK 65 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~ 65 (769)
.+++|.|++|+||||+++.++..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999864
No 360
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.47 E-value=0.022 Score=53.84 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...|+|.|++|+||||+++.+++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999987
No 361
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.44 E-value=0.041 Score=50.71 Aligned_cols=121 Identities=12% Similarity=0.084 Sum_probs=57.8
Q ss_pred ccCCcccEEEeeccCccc---cccCCccccCCCCCCEEeccCCCCC-----ccchhhhcCCCCceeeccCCCcccccch-
Q 039535 425 QFMPSLKVLKISNIGYFN---VLKLPLGMSKLGSLELLDISHSSIE-----ELPEELKLLVNLKCLNLRWTDVLNKIPR- 495 (769)
Q Consensus 425 ~~l~~L~~L~l~~~~~~~---~~~l~~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~l~~lp~- 495 (769)
.+-+.|+.|+|+++..++ ...+...+..-..|+.|+|++|.|. .+...+..-+.|+.|+|++|..-..--.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 344556666665531111 1122333444456666666666665 2333344456677777776652211111
Q ss_pred --HHhcCCCcCcEEEeeccCCCccccccccccccCCccchhhhhhcCCCceEEEEEeCCh
Q 039535 496 --QLISNLSRVRVLRMFATGYDRFHEASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY 553 (769)
Q Consensus 496 --~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~ 553 (769)
.++..=+.|++|+++++....+.... ...+...+...+.|..|++..+..
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g--------~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQV--------EMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHH--------HHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHH--------HHHHHHHHHhCCCcCeEeccCCCc
Confidence 11333345777777654321110000 012445566677777777765554
No 362
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.43 E-value=0.026 Score=52.99 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNK 65 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 65 (769)
++..+|+|+|++|+||||+++.+++.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999998875
No 363
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.42 E-value=0.019 Score=53.77 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+.++|+||+|+|||||++.+...+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999998876
No 364
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.41 E-value=0.025 Score=53.67 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+...|+|.|++|+||||+++.+++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999999987
No 365
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.37 E-value=0.064 Score=54.16 Aligned_cols=39 Identities=31% Similarity=0.324 Sum_probs=29.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK 83 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~ 83 (769)
..++.|+|++|+||||++..++..+.. ....+.++....
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~---~g~kVllid~D~ 143 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAE---LGYKVLIAAADT 143 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHH---TTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCC
Confidence 468999999999999999999988832 233466665543
No 366
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.37 E-value=0.025 Score=55.47 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...|+|.|++|+||||+|+.++..+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999986
No 367
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.35 E-value=0.027 Score=55.85 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.++++|.||+|+|||+||..+++++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3588999999999999999999887
No 368
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.34 E-value=0.023 Score=54.55 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...|+|.|++|+||||+|+.+++++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999999886
No 369
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.33 E-value=0.026 Score=53.85 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...|+|.|++|+||||+|+.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999999987
No 370
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.32 E-value=0.046 Score=58.73 Aligned_cols=42 Identities=24% Similarity=0.388 Sum_probs=31.9
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhhh
Q 039535 25 GLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKFL 67 (769)
Q Consensus 25 gR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 67 (769)
+....++.+...+.++. +.++|.|++|+|||+++.+++..+.
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45555566666665433 4899999999999999999998883
No 371
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.31 E-value=0.027 Score=54.98 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....+|+|.|++|+||||+|+.++..+
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999999876
No 372
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.31 E-value=0.023 Score=51.69 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHI 62 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~ 62 (769)
...+++|+|++|+|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3468999999999999999964
No 373
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.28 E-value=0.023 Score=54.31 Aligned_cols=25 Identities=24% Similarity=0.204 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...|+|.|++|+||||+++.+++++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999999987
No 374
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.25 E-value=0.027 Score=56.65 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..++|+|.||.|+|||||+..+++++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999999987
No 375
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.24 E-value=0.027 Score=52.91 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...|+|.|++|+||||+++.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999886
No 376
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.23 E-value=0.028 Score=54.83 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+|+|+|++|+||||+++.+++++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999999887
No 377
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.22 E-value=0.11 Score=56.41 Aligned_cols=53 Identities=13% Similarity=0.041 Sum_probs=37.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHc
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRI 98 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l 98 (769)
..++.|.|++|+|||+||.+++..... .....++|++... +..++...++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~--~~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGT--AMGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTT--TSCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHH--hcCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 458899999999999999999988732 1134577776543 4566666665443
No 378
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.15 E-value=0.028 Score=52.02 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..+|+|+|+.|+||||+++.+++.+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999999875
No 379
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.13 E-value=0.026 Score=53.10 Aligned_cols=22 Identities=41% Similarity=0.477 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINN 64 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~ 64 (769)
.+|+|+|++|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 380
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.11 E-value=0.027 Score=52.98 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.|+|+|+.|+||||+++.++. +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 689999999999999999987 5
No 381
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.10 E-value=0.3 Score=52.32 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=28.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK 83 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~ 83 (769)
.++|+|+|.+|+||||++.+++..+.+ . ...+..++...
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~-~--G~kVllVd~D~ 139 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQR-K--GWKTCLICADT 139 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHH-T--TCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-C--CCeEEEEeccc
Confidence 458999999999999999999988832 2 22345555543
No 382
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.09 E-value=0.029 Score=52.86 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|.|+.|+|||||++.++.-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998876
No 383
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.08 E-value=0.058 Score=50.74 Aligned_cols=41 Identities=27% Similarity=0.197 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCC
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPR 86 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~ 86 (769)
-.|++.|+||+||||+|..++..+.+ ... .+..+.+..+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~--~G~-~V~v~d~D~q~~ 47 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLR--QGV-RVMAGVVETHGR 47 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHH--TTC-CEEEEECCCTTC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHH--CCC-CEEEEEeCCCCC
Confidence 35889999999999999999998832 222 345555555433
No 384
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.05 E-value=0.037 Score=49.37 Aligned_cols=27 Identities=37% Similarity=0.316 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....+++|.|+.|+|||||++.++...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345689999999999999999998876
No 385
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.03 E-value=0.097 Score=55.20 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....+|+|+|++|+||||+|+.+++++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 345789999999999999999998876
No 386
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.03 E-value=0.13 Score=63.97 Aligned_cols=86 Identities=15% Similarity=0.132 Sum_probs=57.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCC---CCccHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSW---KSKSVEEKALDI 117 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~l 117 (769)
...++.|+|++|+||||||.+++...+ .....++|++.....+... ++.++...... .+.+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a---~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 456899999999999999999999883 2234688888777665432 45565533221 234555555555
Q ss_pred HHHh-ccceEEEEEcccc
Q 039535 118 FRSL-REKRIVLLLDDIW 134 (769)
Q Consensus 118 ~~~l-~~~~~llvlDd~~ 134 (769)
.... ....-+||+|.+.
T Consensus 454 ~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCcEEEECCHH
Confidence 4433 2345689999985
No 387
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.01 E-value=0.03 Score=51.37 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+.|+|.|++|+|||+||..++++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3568899999999999999999886
No 388
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.01 E-value=0.036 Score=53.82 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....+|+|.|+.|+|||||++.++..+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998865
No 389
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.00 E-value=0.031 Score=53.31 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..+++|.|++|+||||+++.+++.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999887
No 390
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.98 E-value=0.033 Score=52.85 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|.||.|+|||||++.++...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 44689999999999999999998876
No 391
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.98 E-value=0.06 Score=51.53 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....|+|.|++|+||||+++.+++.+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44678999999999999999999998
No 392
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.95 E-value=0.028 Score=53.51 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|+|+.|+|||||++.++...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34589999999999999999998865
No 393
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.95 E-value=0.041 Score=53.38 Aligned_cols=40 Identities=23% Similarity=0.178 Sum_probs=29.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK 83 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~ 83 (769)
...++.|.|++|+||||||.+++....+ ....++|+....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC
Confidence 3458999999999999999998877632 234577776543
No 394
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.91 E-value=0.21 Score=53.00 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|+|+.|+|||||++.++..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 35689999999999999999999887
No 395
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.91 E-value=0.034 Score=56.14 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+|+|.|++|+||||||..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999987
No 396
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.89 E-value=0.04 Score=50.50 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...++|+|+.|+||||+++.++..+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999987
No 397
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.87 E-value=0.049 Score=54.52 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+..+++|+|++|+||||+++.++..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34689999999999999999999887
No 398
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.87 E-value=0.036 Score=54.88 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..+++|.||+|+|||+||..+++++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4688999999999999999999887
No 399
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.87 E-value=0.034 Score=55.76 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+++|.|++|+||||||..+++++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 578999999999999999999987
No 400
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.84 E-value=0.017 Score=63.94 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=35.6
Q ss_pred ccccchHHHHHHHHHHhhcCCce-----------EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQSQLEQVWRCLIEESAG-----------IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~~~~~~-----------~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+.++|.+...+.+.-.+..+..+ .|.++|++|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 56899998777765555433212 58899999999999999998876
No 401
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.84 E-value=0.059 Score=54.38 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=32.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCC
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDP 85 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~ 85 (769)
...++|+|+|-||+||||+|..++..+.+ . ...++-++...+.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~-~--G~~VlliD~D~~~ 81 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI-L--GKRVLQIGCDPKH 81 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH-T--TCCEEEEEESSSC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHH-C--CCeEEEEeCCCCC
Confidence 45678888899999999999999999843 2 3356777766543
No 402
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=93.81 E-value=0.12 Score=54.50 Aligned_cols=97 Identities=16% Similarity=0.167 Sum_probs=54.2
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHH-HHHHhhhhhccCCCC-EEEEEEecCC-CCHHHHHHHHHHHcCCCC------
Q 039535 33 VWRCLIE-ESAGIIGLYGMGGVGKTTLL-IHINNKFLESRTNFD-FVIWVVVSKD-PRLEKIQEDIGKRIGLVD------ 102 (769)
Q Consensus 33 l~~~l~~-~~~~~v~I~G~~GiGKTtLa-~~~~~~~~~~~~~~~-~~~w~~~~~~-~~~~~~~~~l~~~l~~~~------ 102 (769)
.++.+.. ++...+.|.|++|+|||+|| ..+++.. ..+ .++++-+++. .+..++.+.+...-.+..
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 3444433 44567889999999999996 4666664 234 3456666654 456666666665322110
Q ss_pred CCCCCccHHHH----HHHHHHHh--ccceEEEEEcccc
Q 039535 103 DSWKSKSVEEK----ALDIFRSL--REKRIVLLLDDIW 134 (769)
Q Consensus 103 ~~~~~~~~~~~----~~~l~~~l--~~~~~llvlDd~~ 134 (769)
....+...... .-.+.+++ .++++|+++||+-
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 00011111111 11233333 5789999999993
No 403
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.81 E-value=0.041 Score=51.97 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.....++|.|++|+||||+++.++..+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 445689999999999999999999987
No 404
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.78 E-value=0.035 Score=52.64 Aligned_cols=23 Identities=35% Similarity=0.286 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.|+|.|++|+||||+|+.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999887
No 405
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.74 E-value=0.04 Score=55.43 Aligned_cols=27 Identities=30% Similarity=0.293 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....+|+|.|+.|+|||||++.++.-+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345689999999999999999998887
No 406
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.71 E-value=0.037 Score=52.82 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.|+|.|++|+||||+|+.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999887
No 407
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.70 E-value=0.062 Score=57.65 Aligned_cols=45 Identities=13% Similarity=0.020 Sum_probs=34.3
Q ss_pred cccchHHHHHHHHHHhh--cCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 22 TLVGLQSQLEQVWRCLI--EESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 22 ~~vgR~~~~~~l~~~l~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..+.|.+..+.+.+... .....+|++.|++|+||||+|+.+++++
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 45556666666666552 2344689999999999999999999998
No 408
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.67 E-value=0.021 Score=54.18 Aligned_cols=23 Identities=35% Similarity=0.709 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+|+|.|++|+||||+++.++..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999987
No 409
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.66 E-value=0.037 Score=52.57 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..|+|.|++|+||||+|+.+++++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999987
No 410
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.65 E-value=0.043 Score=52.80 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...|+|.|++|+||||+|+.+++++
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999987
No 411
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.65 E-value=0.05 Score=51.08 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNK 65 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~ 65 (769)
.+++|.|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998876
No 412
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.65 E-value=0.084 Score=51.13 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=27.2
Q ss_pred HHHHHHhhcC--CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 31 EQVWRCLIEE--SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 31 ~~l~~~l~~~--~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.-+..++... +...+.++||+|+|||.+|.++++..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3355555432 24479999999999999999999874
No 413
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.64 E-value=0.039 Score=51.92 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+|+|.|++|+||||+++.++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999999987
No 414
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.64 E-value=0.038 Score=57.64 Aligned_cols=95 Identities=11% Similarity=0.150 Sum_probs=53.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhcc-------CCCC-EEEEEEecC-CCCHHHHHHHHHHHcCCC------CCC
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESR-------TNFD-FVIWVVVSK-DPRLEKIQEDIGKRIGLV------DDS 104 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-------~~~~-~~~w~~~~~-~~~~~~~~~~l~~~l~~~------~~~ 104 (769)
++...+.|.|.+|+|||+|+.++++...... ++.+ .++++-++. ..+..++.+.+...-.+. ...
T Consensus 145 grGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~ 224 (464)
T 3gqb_B 145 VRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKA 224 (464)
T ss_dssp BTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEET
T ss_pred ccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECC
Confidence 3445678999999999999999988762110 1222 555555554 456666766655421000 000
Q ss_pred CCCccHHH----HHHHHHHHh---ccceEEEEEcccc
Q 039535 105 WKSKSVEE----KALDIFRSL---REKRIVLLLDDIW 134 (769)
Q Consensus 105 ~~~~~~~~----~~~~l~~~l---~~~~~llvlDd~~ 134 (769)
..+..... ..-.+.+++ .++++|+++||+-
T Consensus 225 d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 225 DDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp TSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 01111111 122344444 3689999999993
No 415
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.63 E-value=0.067 Score=53.81 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=31.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecC
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSK 83 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~ 83 (769)
++.++|+|+|-||+||||.+..++.-+.+ ....|.-+++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~---~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI---LGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH---CCCeEEEEecCC
Confidence 57789999999999999999999988832 223466677664
No 416
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.62 E-value=0.12 Score=48.79 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...|+|.|+.|+||||+++.+++.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999998
No 417
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.60 E-value=0.13 Score=52.94 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
++..+|+|+|.+|+|||||+..++..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998887
No 418
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.56 E-value=0.036 Score=53.67 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...|+|+|++|+||||+++.++..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999987
No 419
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.52 E-value=0.043 Score=51.52 Aligned_cols=43 Identities=28% Similarity=0.264 Sum_probs=21.6
Q ss_pred cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 24 VGLQSQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 24 vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
-+++...+.+.+.......-.|+|.|.+|+|||||+..+....
T Consensus 12 ~~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 12 SGLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ------------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CCcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3445555555555444455678899999999999999888654
No 420
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.51 E-value=0.077 Score=48.11 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.++++|.|++|+|||||+..+...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999887
No 421
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.45 E-value=0.076 Score=48.79 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+++++|+.|+||||++..++.++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999998888876
No 422
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.45 E-value=0.084 Score=55.87 Aligned_cols=101 Identities=12% Similarity=0.149 Sum_probs=54.8
Q ss_pred HHHhhc-CCceEEEEEcCCCCcHHHHH-HHHHhhhhhc---cCCCC-EEEEEEecCC-CCHHHHHHHHHHHcCCC-----
Q 039535 34 WRCLIE-ESAGIIGLYGMGGVGKTTLL-IHINNKFLES---RTNFD-FVIWVVVSKD-PRLEKIQEDIGKRIGLV----- 101 (769)
Q Consensus 34 ~~~l~~-~~~~~v~I~G~~GiGKTtLa-~~~~~~~~~~---~~~~~-~~~w~~~~~~-~~~~~~~~~l~~~l~~~----- 101 (769)
++.+.. ++...+.|.|++|+|||+|| ..+++..... ..+.+ .++++-+++. .++.++.+.+...-.+.
T Consensus 153 ID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV 232 (510)
T 2ck3_A 153 VDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVV 232 (510)
T ss_dssp HHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred eccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEE
Confidence 444433 44557889999999999995 5666665210 11233 4566666654 45666666666421110
Q ss_pred -CCCCCCccHHHH----HHHHHHHh--ccceEEEEEcccc
Q 039535 102 -DDSWKSKSVEEK----ALDIFRSL--REKRIVLLLDDIW 134 (769)
Q Consensus 102 -~~~~~~~~~~~~----~~~l~~~l--~~~~~llvlDd~~ 134 (769)
.....+...... .-.+.+++ .++++|+++||+-
T Consensus 233 ~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 233 SATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp EECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 000011111111 11233333 5789999999993
No 423
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.42 E-value=0.1 Score=63.83 Aligned_cols=86 Identities=15% Similarity=0.140 Sum_probs=56.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCC---CCccHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSW---KSKSVEEKALDI 117 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~l 117 (769)
..+++.|+|++|+||||||.+++...++ ....++|++.....+.. .++.++...... .+.+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~---~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---hCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHH
Confidence 4568999999999999999999988732 23468888877766553 245555432211 223455555544
Q ss_pred HHHh-ccceEEEEEcccc
Q 039535 118 FRSL-REKRIVLLLDDIW 134 (769)
Q Consensus 118 ~~~l-~~~~~llvlDd~~ 134 (769)
.... ....-+||+|.+.
T Consensus 454 ~~lv~~~~~~lVVIDSL~ 471 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVA 471 (1706)
T ss_dssp HHHHHHTCCSEEEESCST
T ss_pred HHHHHhcCCCEEEECCHH
Confidence 4433 2345589999984
No 424
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.41 E-value=0.086 Score=55.37 Aligned_cols=100 Identities=12% Similarity=0.131 Sum_probs=56.3
Q ss_pred HHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhhhhccC-CCCEEEEEEecC-CCCHHHHHHHHHHHcCCCC-----CCC
Q 039535 34 WRCLIE-ESAGIIGLYGMGGVGKTTLLIHINNKFLESRT-NFDFVIWVVVSK-DPRLEKIQEDIGKRIGLVD-----DSW 105 (769)
Q Consensus 34 ~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-~~~~~~w~~~~~-~~~~~~~~~~l~~~l~~~~-----~~~ 105 (769)
++.+.. .+...++|.|.+|+|||+|+.++++....... .-+.++++-++. ..+..++.+.+...-.+.. ...
T Consensus 143 ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~ts 222 (469)
T 2c61_A 143 IDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLA 222 (469)
T ss_dssp HHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEET
T ss_pred eeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECC
Confidence 444433 34456778999999999999999988721111 123555655554 4567777777765321100 000
Q ss_pred -CCccHH----HHHHHHHHHh---ccceEEEEEccc
Q 039535 106 -KSKSVE----EKALDIFRSL---REKRIVLLLDDI 133 (769)
Q Consensus 106 -~~~~~~----~~~~~l~~~l---~~~~~llvlDd~ 133 (769)
.+.... ...-.+.+++ .++++|+++||+
T Consensus 223 d~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 223 DDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 111111 1112233444 468999999998
No 425
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=93.37 E-value=0.075 Score=56.14 Aligned_cols=96 Identities=15% Similarity=0.204 Sum_probs=53.5
Q ss_pred HHHhhc-CCceEEEEEcCCCCcHHHHHH-HHHhhhhhccCCCC-EEEEEEecCC-CCHHHHHHHHHHHcCCC------CC
Q 039535 34 WRCLIE-ESAGIIGLYGMGGVGKTTLLI-HINNKFLESRTNFD-FVIWVVVSKD-PRLEKIQEDIGKRIGLV------DD 103 (769)
Q Consensus 34 ~~~l~~-~~~~~v~I~G~~GiGKTtLa~-~~~~~~~~~~~~~~-~~~w~~~~~~-~~~~~~~~~l~~~l~~~------~~ 103 (769)
++.+.. ++...++|.|++|+|||+||. .+++.. ..+ .++++-+++. .++.++.+.+...-.+. ..
T Consensus 166 ID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~at 240 (515)
T 2r9v_A 166 IDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVAS 240 (515)
T ss_dssp HHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEEC
T ss_pred cccccccccCCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEEC
Confidence 444433 445578899999999999964 666654 234 3456666654 45666666665421110 00
Q ss_pred CCCCccHHHH----HHHHHHHh--ccceEEEEEcccc
Q 039535 104 SWKSKSVEEK----ALDIFRSL--REKRIVLLLDDIW 134 (769)
Q Consensus 104 ~~~~~~~~~~----~~~l~~~l--~~~~~llvlDd~~ 134 (769)
...+...... .-.+.+++ .++.+|+++||+-
T Consensus 241 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 241 ASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 0011111111 11233333 5789999999993
No 426
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.30 E-value=0.056 Score=51.36 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINN 64 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~ 64 (769)
..+|+|+|+.|+||||+++.++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 427
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.29 E-value=0.11 Score=54.77 Aligned_cols=91 Identities=15% Similarity=0.159 Sum_probs=51.2
Q ss_pred CCceEEEEEcCCCCcHHHHH-HHHHhhhhhccCCCCEEEEEEecCC-CCHHHHHHHHHHHcCCCC------CCCCCccHH
Q 039535 40 ESAGIIGLYGMGGVGKTTLL-IHINNKFLESRTNFDFVIWVVVSKD-PRLEKIQEDIGKRIGLVD------DSWKSKSVE 111 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa-~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~l~~~l~~~~------~~~~~~~~~ 111 (769)
++...+.|.|.+|+|||+|| ..+++.. ..-..++++-+++. .++.++.+.+...-.+.. ....+....
T Consensus 160 grGQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r 235 (513)
T 3oaa_A 160 GRGQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQ 235 (513)
T ss_dssp BTTCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHH
T ss_pred ccCCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHH
Confidence 44557889999999999996 4565542 22224566666664 456677776654321110 000111111
Q ss_pred HH----HHHHHHHh--ccceEEEEEcccc
Q 039535 112 EK----ALDIFRSL--REKRIVLLLDDIW 134 (769)
Q Consensus 112 ~~----~~~l~~~l--~~~~~llvlDd~~ 134 (769)
.. .-.+.+++ .++++|+++||+-
T Consensus 236 ~~a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 236 YLAPYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 11 11122333 5789999999993
No 428
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.26 E-value=0.047 Score=53.14 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNK 65 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~ 65 (769)
...+++|.|++|+|||||++.++..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998843
No 429
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.17 E-value=0.029 Score=55.95 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+..+|+|.|++|+||||+|+.+++.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999876
No 430
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.14 E-value=0.035 Score=53.35 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=16.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH-hhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHIN-NKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~-~~~ 66 (769)
..+++|+|+.|+|||||++.++ ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4589999999999999999998 654
No 431
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.12 E-value=0.099 Score=52.64 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....+|+|+|+.|+|||||++.++..+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999998876
No 432
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.11 E-value=0.054 Score=56.48 Aligned_cols=93 Identities=13% Similarity=0.138 Sum_probs=52.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCC-EEEEEEecC-CCCHHHHHHHHHHHcCCC------CCCCCCccHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFD-FVIWVVVSK-DPRLEKIQEDIGKRIGLV------DDSWKSKSVEE 112 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~-~~~w~~~~~-~~~~~~~~~~l~~~l~~~------~~~~~~~~~~~ 112 (769)
+...+.|.|.+|+|||+|+.++++......++.+ .++++-++. ..+..++.+.+...-.+. .....+.....
T Consensus 150 rGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 150 RGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred cCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 3446789999999999999999887621112222 555555554 456677777665431010 00001111111
Q ss_pred ----HHHHHHHHh---ccceEEEEEccc
Q 039535 113 ----KALDIFRSL---REKRIVLLLDDI 133 (769)
Q Consensus 113 ----~~~~l~~~l---~~~~~llvlDd~ 133 (769)
..-.+.+++ .++++|+++||+
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 112244444 368999999999
No 433
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.11 E-value=0.055 Score=53.67 Aligned_cols=23 Identities=26% Similarity=0.589 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHIN 63 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~ 63 (769)
...+|+|+|++|+||||+|+.++
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999998
No 434
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.11 E-value=0.046 Score=50.47 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNKFL 67 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~~~ 67 (769)
+++|+|+.|+|||||++.++..++
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 688999999999999999998873
No 435
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.08 E-value=0.034 Score=50.32 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
++++|+|++|+|||||+..++..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999887
No 436
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.04 E-value=0.065 Score=52.40 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....+++|+|+.|+||||+++.++...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 455799999999999999999998876
No 437
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.04 E-value=0.11 Score=52.97 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=34.0
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCC
Q 039535 39 EESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPR 86 (769)
Q Consensus 39 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~ 86 (769)
+...+++++.|.||+||||+|..++..+.. ......+.-++.....+
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~-~~~g~~vllid~D~~~~ 61 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLAL-AQPNEQFLLISTDPAHN 61 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHHH-HCTTSCEEEEECCSSCH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHH-hcCCCeEEEEECCCCCC
Confidence 355689999999999999999999998831 03344566677664433
No 438
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.00 E-value=0.05 Score=52.30 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|+|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45689999999999999999888765
No 439
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=92.98 E-value=0.21 Score=53.19 Aligned_cols=58 Identities=17% Similarity=0.280 Sum_probs=40.9
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC-CCHHHHHHHHH
Q 039535 33 VWRCLIE-ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD-PRLEKIQEDIG 95 (769)
Q Consensus 33 l~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~l~ 95 (769)
.++.+.. ++...++|.|++|+|||+|+.++++.. +.+.++++-++.. .+..++.+.+-
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~~ 276 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEFP 276 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHTT
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHHH
Confidence 3444443 455688999999999999999987753 2356777777654 55677776654
No 440
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.96 E-value=0.13 Score=51.40 Aligned_cols=53 Identities=17% Similarity=0.168 Sum_probs=34.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHH
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGK 96 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 96 (769)
....+++|.|++|+|||||+..++...... ....+.|+.... ....+.+.+..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcC--CHHHHHHHHHH
Confidence 344689999999999999999999887321 122466665432 33444444433
No 441
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.95 E-value=0.13 Score=52.28 Aligned_cols=47 Identities=26% Similarity=0.227 Sum_probs=35.0
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHH
Q 039535 39 EESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLE 88 (769)
Q Consensus 39 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 88 (769)
+...+++++.|-||+||||+|..++..+. .....++-++.....+..
T Consensus 13 ~~~~~i~~~sgkGGvGKTt~a~~lA~~la---~~g~~vllid~D~~~~l~ 59 (334)
T 3iqw_A 13 QRSLRWIFVGGKGGVGKTTTSCSLAIQLA---KVRRSVLLLSTDPAHNLS 59 (334)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHT---TSSSCEEEEECCSSCHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHH---hCCCcEEEEECCCCCChh
Confidence 34567889999999999999999999983 334467777766544333
No 442
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=92.94 E-value=0.1 Score=55.70 Aligned_cols=58 Identities=19% Similarity=0.299 Sum_probs=39.7
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC-CCHHHHHHHHH
Q 039535 33 VWRCLIE-ESAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD-PRLEKIQEDIG 95 (769)
Q Consensus 33 l~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~l~ 95 (769)
.++.+.. .+...++|.|++|+|||+|+.++++.. +.+.++++-++.. .+..++++.+-
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~~~ 281 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNEFP 281 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHHTT
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHHH
Confidence 3444443 455688999999999999999988764 2356777766654 45555555543
No 443
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.90 E-value=0.095 Score=51.97 Aligned_cols=26 Identities=23% Similarity=0.462 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...++.|+|++|+|||||+.+++...
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998866
No 444
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.88 E-value=0.076 Score=53.12 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..+++|+|+.|+||||+++.++..+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999887
No 445
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.88 E-value=0.15 Score=53.37 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....+++|+|+.|+||||+++.++...
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 455789999999999999999998887
No 446
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.86 E-value=0.059 Score=51.90 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.. .+++|.|+.|+|||||++.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 46 799999999999999999988765
No 447
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.79 E-value=0.066 Score=55.17 Aligned_cols=24 Identities=42% Similarity=0.695 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+|+|.||+|+||||||..++.++
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 578999999999999999999987
No 448
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.74 E-value=0.15 Score=62.47 Aligned_cols=85 Identities=16% Similarity=0.183 Sum_probs=58.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCC---CCccHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSW---KSKSVEEKALDI 117 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~l 117 (769)
+.++|-|+||+|+||||||.+++.+. +......+|++..+..+..- ++.++...++. .+..-++.+..+
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~---~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 34689999999999999999999887 33445678888777666553 66776654321 333445555555
Q ss_pred HHHhcc-ceEEEEEccc
Q 039535 118 FRSLRE-KRIVLLLDDI 133 (769)
Q Consensus 118 ~~~l~~-~~~llvlDd~ 133 (769)
...++. ..-+||+|-|
T Consensus 1502 ~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHHTCCSEEEESCS
T ss_pred HHHHHcCCCCEEEEccH
Confidence 555533 4558889988
No 449
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.70 E-value=0.055 Score=49.91 Aligned_cols=113 Identities=8% Similarity=-0.021 Sum_probs=70.7
Q ss_pred CCCCCceEEEeecccchhccc----CcccccCCcccEEEeeccCccc--cccCCccccCCCCCCEEeccCCCCC-----c
Q 039535 400 PTCPHLLTLFLDFNRELMMIA----GGYFQFMPSLKVLKISNIGYFN--VLKLPLGMSKLGSLELLDISHSSIE-----E 468 (769)
Q Consensus 400 ~~~~~L~~L~l~~~~~~~~i~----~~~~~~l~~L~~L~l~~~~~~~--~~~l~~~~~~l~~L~~L~l~~~~i~-----~ 468 (769)
..-+.|+.|+|++|..+.+.. ..++..-+.|+.|+|++|.+.. ...+...+..-..|++|+|++|.|+ .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 445678888888752243221 2335667889999999984321 1123344555578999999999887 2
Q ss_pred cchhhhcCCCCceeeccCCCc--ccc-----cchHHhcCCCcCcEEEeeccC
Q 039535 469 LPEELKLLVNLKCLNLRWTDV--LNK-----IPRQLISNLSRVRVLRMFATG 513 (769)
Q Consensus 469 lp~~~~~l~~L~~L~l~~~~~--l~~-----lp~~~~~~l~~L~~L~l~~~~ 513 (769)
+-+.+..-+.|++|+|++|.. ++. +.. ++..=+.|+.|++..+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCC
Confidence 334455557799999987631 221 222 24455788999887654
No 450
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.60 E-value=0.077 Score=49.45 Aligned_cols=112 Identities=21% Similarity=0.119 Sum_probs=52.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKRIGLVDDSWKSKSVEEKALDIFRS 120 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 120 (769)
...+.+++|+-|.||||.+...+.++. . ... .++.++..... ..-...+.+.++........... ..+.+.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~-~-~g~-kVli~k~~~d~--R~ge~~i~s~~g~~~~a~~~~~~----~~~~~~ 97 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQ-F-AKQ-HAIVFKPCIDN--RYSEEDVVSHNGLKVKAVPVSAS----KDIFKH 97 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHH-H-TTC-CEEEEECC-------------------CCEEECSSG----GGGGGG
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH-H-CCC-EEEEEEeccCC--cchHHHHHhhcCCeeEEeecCCH----HHHHHH
Confidence 346788999999999999999998882 2 222 33333322211 11112344444332211011111 122333
Q ss_pred hccceEEEEEccccc--ccccccccccCCCCCCCCcEEEEEcCchhh
Q 039535 121 LREKRIVLLLDDIWE--RLDLTKVGVPLPGPKNTTSKVVFTTRFFDV 165 (769)
Q Consensus 121 l~~~~~llvlDd~~~--~~~~~~~~~~l~~~~~~~~~iiittr~~~~ 165 (769)
..++-=+|++|+++- .+.++.+. .+. ..+..||+|.++.++
T Consensus 98 ~~~~~dvViIDEaQF~~~~~V~~l~-~l~---~~~~~Vi~~Gl~~DF 140 (214)
T 2j9r_A 98 ITEEMDVIAIDEVQFFDGDIVEVVQ-VLA---NRGYRVIVAGLDQDF 140 (214)
T ss_dssp CCSSCCEEEECCGGGSCTTHHHHHH-HHH---HTTCEEEEEECSBCT
T ss_pred HhcCCCEEEEECcccCCHHHHHHHH-HHh---hCCCEEEEEeccccc
Confidence 333333999999953 23332222 211 136789999986554
No 451
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.56 E-value=0.071 Score=53.56 Aligned_cols=24 Identities=33% Similarity=0.253 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+|+|.|++|+||||+|+.++++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999999999998863
No 452
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.53 E-value=0.058 Score=51.39 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|+|+.|+|||||++.++.-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999887665
No 453
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.49 E-value=0.064 Score=51.60 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|+|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999988776
No 454
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.48 E-value=0.13 Score=52.92 Aligned_cols=27 Identities=22% Similarity=0.049 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.....++|+|++|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345689999999999999999999765
No 455
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.47 E-value=0.12 Score=54.54 Aligned_cols=87 Identities=17% Similarity=0.206 Sum_probs=49.6
Q ss_pred CCceEEEEEcCCCCcHHHHH-HHHHhhhhhccCCCC-EEEEEEecCC-CCHHHHHHHHHHHcCC--------CCCC--CC
Q 039535 40 ESAGIIGLYGMGGVGKTTLL-IHINNKFLESRTNFD-FVIWVVVSKD-PRLEKIQEDIGKRIGL--------VDDS--WK 106 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa-~~~~~~~~~~~~~~~-~~~w~~~~~~-~~~~~~~~~l~~~l~~--------~~~~--~~ 106 (769)
++...+.|.|++|+|||+|| ..+++.. . .+ .++++-+++. .+..++.+.+...-.+ ..++ ..
T Consensus 161 grGQR~~Ifg~~g~GKT~Lal~~I~~~~----~-~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~ 235 (507)
T 1fx0_A 161 GRGQRELIIGDRQTGKTAVATDTILNQQ----G-QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATL 235 (507)
T ss_dssp BTTCBCBEEESSSSSHHHHHHHHHHTCC----T-TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGG
T ss_pred ccCCEEEEecCCCCCccHHHHHHHHHhh----c-CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHH
Confidence 34457889999999999996 4666654 2 33 3455656553 4555665555442111 0011 01
Q ss_pred Ccc----HHHHHHHHHHHhccceEEEEEccc
Q 039535 107 SKS----VEEKALDIFRSLREKRIVLLLDDI 133 (769)
Q Consensus 107 ~~~----~~~~~~~l~~~l~~~~~llvlDd~ 133 (769)
..- --...+++++ .++++|+++||+
T Consensus 236 r~~a~~~a~tiAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 236 QYLAPYTGAALAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp TTHHHHHHHHHHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 111 1122333443 589999999998
No 456
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.44 E-value=0.085 Score=47.02 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNK 65 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~ 65 (769)
+.|.|.|++|+||||+|..+.++
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 56789999999999999998875
No 457
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.43 E-value=0.075 Score=52.93 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.....++|+|+.|+|||||++.++.-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 445689999999999999999988765
No 458
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.33 E-value=0.068 Score=52.31 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....+++|.|+.|+|||||++.++.-.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999988765
No 459
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.33 E-value=0.14 Score=47.33 Aligned_cols=26 Identities=27% Similarity=0.232 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....|+|+|++|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999988764
No 460
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.32 E-value=0.15 Score=46.91 Aligned_cols=35 Identities=23% Similarity=0.542 Sum_probs=26.5
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhh
Q 039535 30 LEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNK 65 (769)
Q Consensus 30 ~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 65 (769)
+.++.+++ ......|+|.|.+|+|||||+.++...
T Consensus 5 ~~~~~~~~-~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 5 FTRIWRLF-NHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHHHHH-TTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHHhc-CCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34555533 345567889999999999999999854
No 461
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.30 E-value=0.31 Score=46.77 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=18.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNK 65 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~ 65 (769)
.+.++|.|+.|+||||++..+.-+
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHhc
Confidence 358899999999999876655443
No 462
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.30 E-value=0.11 Score=56.48 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=30.9
Q ss_pred ccchHHHHHHHHHHhh--cCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 23 LVGLQSQLEQVWRCLI--EESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 23 ~vgR~~~~~~l~~~l~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+.|....+.+.+... -....+++|+|+.|+|||||++.++..+
T Consensus 348 ~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 348 WYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp TTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhh
Confidence 3444444444444331 1344689999999999999999999998
No 463
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.29 E-value=0.16 Score=48.60 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...|+|.|++|+||||+++.+++.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999999998
No 464
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.24 E-value=0.17 Score=47.54 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=33.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHH
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGK 96 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 96 (769)
..|+|.|+.|+||||+++.+++.+. .. .+..+.+..-.......+..++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~-~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE-QL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH-HT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-Hc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 4789999999999999999999983 22 2323333322222234455555554
No 465
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.19 E-value=0.17 Score=49.51 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+..++++.|.+|+||||++.+++..+
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999999887
No 466
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.19 E-value=0.094 Score=50.50 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+|+|+|+.|+||||+++.++..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999876
No 467
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.15 E-value=0.11 Score=53.26 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
..+++|+|+.|+||||+++.++..+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4589999999999999999999887
No 468
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.15 E-value=0.079 Score=51.21 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....+++|+|+.|+|||||++.++.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999987665
No 469
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.12 E-value=0.075 Score=51.93 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|.|+.|+|||||++.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45689999999999999999988765
No 470
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.08 E-value=0.089 Score=51.63 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNK 65 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 65 (769)
....+++|+|+.|+|||||++.++.-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999875
No 471
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.07 E-value=0.071 Score=52.47 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|+|+.|+|||||++.++.-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 44689999999999999999987665
No 472
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.06 E-value=0.18 Score=46.89 Aligned_cols=50 Identities=20% Similarity=0.144 Sum_probs=32.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 039535 45 IGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDIGKR 97 (769)
Q Consensus 45 v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 97 (769)
|+|-|.-|+||||.++.+++.+.+ . ...+++..........+..+.++..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~-~--g~~v~~treP~~t~~~~~ir~~l~~ 52 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEK-R--GKKVILKREPGGTETGEKIRKILLE 52 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH-T--TCCEEEEESSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-C--CCcEEEEECCCCCcHHHHHHHHhhc
Confidence 678999999999999999999832 2 2234444333333445555555533
No 473
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.06 E-value=0.085 Score=48.84 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
-.|+|.|++|+|||||++.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998765
No 474
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.00 E-value=0.095 Score=46.63 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
+.|+|.|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998764
No 475
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.95 E-value=0.091 Score=51.01 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNK 65 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~ 65 (769)
...+++|.|+.|+|||||++.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4458999999999999999999875
No 476
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.93 E-value=0.066 Score=50.48 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|.|+.|+|||||++.++.-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34588999999999999999987765
No 477
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.92 E-value=0.12 Score=48.94 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.....|+|.|+.|+||||+++.+++.+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455689999999999999999999998
No 478
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.90 E-value=0.078 Score=51.95 Aligned_cols=26 Identities=31% Similarity=0.545 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|.|+.|+|||||++.++.-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44689999999999999999988765
No 479
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.89 E-value=0.083 Score=51.41 Aligned_cols=26 Identities=42% Similarity=0.556 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|.|+.|+|||||++.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999987765
No 480
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.88 E-value=0.08 Score=51.27 Aligned_cols=26 Identities=35% Similarity=0.584 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|+|+.|+|||||++.++.-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987765
No 481
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.85 E-value=0.081 Score=51.02 Aligned_cols=26 Identities=38% Similarity=0.496 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|+|+.|+|||||++.++.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999988765
No 482
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.84 E-value=0.12 Score=49.09 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKFL 67 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 67 (769)
...|+|.|+.|+||||+++.+++.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999983
No 483
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.82 E-value=0.085 Score=51.53 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....+++|+|+.|+|||||++.++.-.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 344689999999999999999988765
No 484
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.82 E-value=0.1 Score=50.39 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 42 AGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 42 ~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...|+|.|..|+||||+++.+++.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999999987
No 485
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.79 E-value=0.083 Score=50.51 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|.|+.|+|||||++.++.-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998776
No 486
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.76 E-value=0.14 Score=53.52 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....++|+|+.|+|||||.+.++...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999998854
No 487
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.75 E-value=0.11 Score=46.76 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNK 65 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~ 65 (769)
..|+|.|++|+|||||+..+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999875
No 488
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.75 E-value=0.18 Score=49.61 Aligned_cols=39 Identities=21% Similarity=0.356 Sum_probs=29.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCC
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKD 84 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~ 84 (769)
++|+|.|-||+||||+|..++..+. .....+.-++...+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la---~~G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH---AMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH---TTTCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH---HCCCcEEEEcCCCC
Confidence 4677789999999999999999983 22345667776654
No 489
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.75 E-value=0.087 Score=51.80 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 40 ESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 40 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
....+++|+|+.|+|||||++.++.-.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999987765
No 490
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.74 E-value=0.084 Score=51.52 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|.|+.|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999988765
No 491
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.71 E-value=0.072 Score=48.94 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 039535 44 IIGLYGMGGVGKTTLLIHINNK 65 (769)
Q Consensus 44 ~v~I~G~~GiGKTtLa~~~~~~ 65 (769)
.|+|+|++|+|||||+..++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998874
No 492
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.67 E-value=0.1 Score=48.61 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
-.|+|.|++|+|||||+..++...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999998764
No 493
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.63 E-value=0.13 Score=57.97 Aligned_cols=37 Identities=32% Similarity=0.280 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 28 SQLEQVWRCLIEESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 28 ~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
.+.+.+...+. ......|+||||+|||+.+.+++..+
T Consensus 193 ~Q~~AV~~al~--~~~~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 193 SQKEAVLFALS--QKELAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp HHHHHHHHHHH--CSSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34445555553 23478899999999998777766665
No 494
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.60 E-value=0.13 Score=49.85 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=32.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhhhccCCCCEEEEEEecCCCCHHHHHHHH
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKFLESRTNFDFVIWVVVSKDPRLEKIQEDI 94 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 94 (769)
...++.|.|++|+|||++|.+++..... .....+++++... ....+.+.+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~--~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAE--EYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHH--HHCCCEEEEESSS--CHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH--hcCCCceeecccC--CHHHHHHHH
Confidence 3458999999999999999998765411 1223456665433 344444443
No 495
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.58 E-value=0.1 Score=53.17 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|.||.|+|||||++.++--.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 44689999999999999999998875
No 496
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.55 E-value=0.094 Score=51.43 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|+|+.|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44689999999999999999987665
No 497
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.53 E-value=0.21 Score=54.52 Aligned_cols=46 Identities=13% Similarity=0.093 Sum_probs=34.1
Q ss_pred ccccchHHHHHHHHHHhh--cCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 21 RTLVGLQSQLEQVWRCLI--EESAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 21 ~~~vgR~~~~~~l~~~l~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
++.+-|....+.+.+... .....+|+++|++|+||||+|+.+.+.+
T Consensus 349 p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 349 PEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp CTTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHh
Confidence 345556666666666552 2335688999999999999999999987
No 498
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.45 E-value=0.094 Score=50.76 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 41 SAGIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 41 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
...+++|+|+.|+|||||++.++.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999988776
No 499
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.43 E-value=0.12 Score=47.30 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=25.5
Q ss_pred HHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhh
Q 039535 31 EQVWRCLIE-ESAGIIGLYGMGGVGKTTLLIHINNK 65 (769)
Q Consensus 31 ~~l~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~ 65 (769)
.++.+.+.. .....|+|.|++|+|||||+..+...
T Consensus 6 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 6 SSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp HHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred HHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 344444433 45567899999999999999888743
No 500
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.35 E-value=0.11 Score=47.45 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 039535 43 GIIGLYGMGGVGKTTLLIHINNKF 66 (769)
Q Consensus 43 ~~v~I~G~~GiGKTtLa~~~~~~~ 66 (769)
++.+|+|+.|+|||||+.+++.-+
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999999988765
Done!