BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039536
(150 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O34598|GUAD_BACSU Guanine deaminase OS=Bacillus subtilis (strain 168) GN=guaD PE=1
SV=1
Length = 156
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 92 DHE-FLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150
+HE FL +AV A +GV G GGPFGAV+V+ ++ N V DPTAHAEVTA+R+
Sbjct: 2 NHETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRK 61
>sp|O67050|TADA_AQUAE tRNA-specific adenosine deaminase OS=Aquifex aeolicus (strain VF5)
GN=tadA PE=1 SV=1
Length = 151
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 95 FLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150
FL A+ EA + E G+ P GA++V+ E++ HN V + DPTAHAE+ A++E
Sbjct: 6 FLKVALREAKRAFEKGEV-PVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKE 60
>sp|Q8K9R4|Y246_BUCAP Uncharacterized protein BUsg_246 OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=BUsg_246 PE=3 SV=1
Length = 151
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 90 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVR 149
+RD ++ A++ AY E G+ P GA++V ++++ + N V+ D TAHAE+ A+R
Sbjct: 4 NRDSYWMKIALKYAYYAEENGEV-PIGAILVFQEKIIGTGWNSVISQNDSTAHAEIIALR 62
Query: 150 E 150
E
Sbjct: 63 E 63
>sp|P57343|Y255_BUCAI Uncharacterized protein BU255 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=BU255 PE=3 SV=1
Length = 161
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 90 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVR 149
++D ++ A++ AY E G+ P GA++V + ++ N + DPTAHAE+ A+R
Sbjct: 4 EKDKNWMKIALKYAYYAKEKGEI-PIGAILVFKERIIGIGWNSSISKNDPTAHAEIIALR 62
>sp|Q9S7I0|TADA_ARATH tRNA-specific adenosine deaminase, chloroplastic OS=Arabidopsis
thaliana GN=TADA PE=1 SV=1
Length = 1307
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 92 DHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150
D F+ +A+ EA K + + P GAV+V +++ +N+V + D TAHAE+ +RE
Sbjct: 1110 DEIFMREALVEAKKAADTWEV-PVGAVLVHDGKIIARGYNLVEELRDSTAHAEMICIRE 1167
>sp|P68397|TADA_SHIFL tRNA-specific adenosine deaminase OS=Shigella flexneri GN=tadA PE=3
SV=2
Length = 167
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 114 PFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150
P GAV+V ++ V+ N + DPTAHAE+ A+R+
Sbjct: 29 PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 65
>sp|P68398|TADA_ECOLI tRNA-specific adenosine deaminase OS=Escherichia coli (strain K12)
GN=tadA PE=1 SV=2
Length = 167
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 114 PFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150
P GAV+V ++ V+ N + DPTAHAE+ A+R+
Sbjct: 29 PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 65
>sp|Q8FF24|TADA_ECOL6 tRNA-specific adenosine deaminase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=tadA PE=3 SV=2
Length = 167
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 114 PFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150
P GAV+V ++ V+ N + DPTAHAE+ A+R+
Sbjct: 29 PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 65
>sp|Q8XA44|TADA_ECO57 tRNA-specific adenosine deaminase OS=Escherichia coli O157:H7
GN=tadA PE=3 SV=2
Length = 167
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 114 PFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150
P GAV+V ++ V+ N + DPTAHAE+ A+R+
Sbjct: 29 PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 65
>sp|P21335|TADA_BACSU tRNA-specific adenosine deaminase OS=Bacillus subtilis (strain 168)
GN=tadA PE=1 SV=1
Length = 161
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 91 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150
+D ++ +A++EA K E G+ P GAV+V + E++ HN+ AHAE+ + E
Sbjct: 3 QDELYMKEAIKEAKKAEEKGEV-PIGAVLVINGEIIARAHNLRETEQRSIAHAEMLVIDE 61
>sp|Q7CQ08|TADA_SALTY tRNA-specific adenosine deaminase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=tadA PE=3 SV=2
Length = 172
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 114 PFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150
P GAV+V + V+ N + DPTAHAE+ A+R+
Sbjct: 29 PVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQ 65
>sp|Q8XGY4|TADA_SALTI tRNA-specific adenosine deaminase OS=Salmonella typhi GN=tadA PE=3
SV=2
Length = 172
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 114 PFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150
P GAV+V + V+ N + DPTAHAE+ A+R+
Sbjct: 29 PVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQ 65
>sp|Q89AM8|Y236_BUCBP Uncharacterized protein bbp_236 OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=bbp_236 PE=3 SV=1
Length = 162
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 88 VQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTA 147
+ D D F+ A+ A K E P GAV+V ++ ++ N + + DPTAHAE+ A
Sbjct: 1 MHDSDKYFMKCAIFLA-KISEMIGEVPVGAVLVFNNTIIGKGLNSSILNHDPTAHAEIKA 59
Query: 148 VR 149
+R
Sbjct: 60 LR 61
>sp|P44931|TADA_HAEIN tRNA-specific adenosine deaminase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tadA PE=3 SV=1
Length = 173
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 92 DHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 149
D + + A+E A K G+ P GAV+V + ++ N+ + +DPTAHAE+ A+R
Sbjct: 11 DEKMMRYALELADKAEALGEI-PVGAVLVDDARNIIGEGWNLSIVQSDPTAHAEIIALR 68
>sp|Q5SI38|TILS_THET8 tRNA(Ile)-lysidine synthase OS=Thermus thermophilus (strain HB8 /
ATCC 27634 / DSM 579) GN=tilS PE=3 SV=1
Length = 507
Score = 32.7 bits (73), Expect = 0.83, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 114 PFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150
P GAV+V V+ HN V DPTAHAE+ +RE
Sbjct: 393 PVGAVLVLPGRVL-RAHNRVEGLRDPTAHAEMLLLRE 428
>sp|Q72IF6|TILS_THET2 tRNA(Ile)-lysidine synthase OS=Thermus thermophilus (strain HB27 /
ATCC BAA-163 / DSM 7039) GN=tilS PE=3 SV=1
Length = 507
Score = 32.7 bits (73), Expect = 0.83, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 114 PFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150
P GAV+V V+ HN V DPTAHAE+ +RE
Sbjct: 393 PVGAVLVLPGRVL-RAHNRVEGLRDPTAHAEMLLLRE 428
>sp|Q8P2R7|Y196_STRP8 Uncharacterized deaminase spyM18_0196 OS=Streptococcus pyogenes
serotype M18 (strain MGAS8232) GN=spyM18_0196 PE=3 SV=1
Length = 159
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 95 FLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150
F+ +A++EA K ++ + P G V+V+ E++ HN + HAE+ A+ E
Sbjct: 11 FMQEALKEAEKSLQKAEI-PIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINE 65
>sp|P0DA21|TADA_STRPQ tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M3 (strain SSI-1) GN=tadA PE=3 SV=1
Length = 171
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 95 FLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150
F+ +A++EA K ++ + P G V+V+ E++ HN + HAE+ A+ E
Sbjct: 11 FMQEALKEAEKSLQKAEI-PIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINE 65
>sp|Q5XE14|TADA_STRP6 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=tadA
PE=1 SV=2
Length = 171
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 95 FLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150
F+ +A++EA K ++ + P G V+V+ E++ HN + HAE+ A+ E
Sbjct: 11 FMQEALKEAEKSLQKAEI-PIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINE 65
>sp|P0DA20|TADA_STRP3 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M3 (strain ATCC BAA-595 / MGAS315) GN=tadA PE=3
SV=1
Length = 171
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 95 FLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150
F+ +A++EA K ++ + P G V+V+ E++ HN + HAE+ A+ E
Sbjct: 11 FMQEALKEAEKSLQKAEI-PIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINE 65
>sp|P68999|TADA_STRP1 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M1 GN=tadA PE=3 SV=1
Length = 171
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 95 FLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150
F+ +A++EA K ++ + P G V+V+ E++ HN + HAE+ A+ E
Sbjct: 11 FMQEALKEAEKSLQKAEI-PIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINE 65
>sp|Q5LLT4|TRUB_RUEPO tRNA pseudouridine synthase B OS=Ruegeria pomeroyi (strain ATCC
700808 / DSM 15171 / DSS-3) GN=truB PE=3 SV=1
Length = 303
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 8/104 (7%)
Query: 2 WLAVRKHVNMVIIKI-PSVLWALGMSLAQHSTDSDLFSTSVLESQLITSTTFIHFINN-- 58
WL V K M + V WALG + A H+ D +T VL L +T + +I +
Sbjct: 13 WLVVDKPAGMTSTAVVNKVRWALGANKAGHAGTLDPEATGVLAIALGEATKTVPYITDAL 72
Query: 59 -----NNNMEEANVVETKDGTISVASAFAAHQEAVQDRDHEFLS 97
+ +A + +G + +S E ++D FL
Sbjct: 73 KAYVFTVRLGQATNTDDAEGEVIASSDLRPTDEQIKDALAPFLG 116
>sp|B0BAQ5|RL25_CHLTB 50S ribosomal protein L25 OS=Chlamydia trachomatis serovar L2b
(strain UCH-1/proctitis) GN=rplY PE=3 SV=1
Length = 185
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 16 IPSVLWALGMSLAQHSTDSDLFST--SVLESQLITSTTF 52
IP+VL++ G SLA D+ +FS S LES + ST F
Sbjct: 25 IPAVLYSGGKSLANIVVDARVFSKFLSTLESGALASTVF 63
>sp|B0B926|RL25_CHLT2 50S ribosomal protein L25 OS=Chlamydia trachomatis serovar L2
(strain 434/Bu / ATCC VR-902B) GN=rplY PE=3 SV=1
Length = 185
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 16 IPSVLWALGMSLAQHSTDSDLFST--SVLESQLITSTTF 52
IP+VL++ G SLA D+ +FS S LES + ST F
Sbjct: 25 IPAVLYSGGKSLANIVVDARVFSKFLSTLESGALASTVF 63
>sp|O84805|RL25_CHLTR 50S ribosomal protein L25 OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=rplY PE=3 SV=1
Length = 185
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 16 IPSVLWALGMSLAQHSTDSDLFST--SVLESQLITSTTF 52
IP+VL++ G SLA D+ +FS S LES + ST F
Sbjct: 25 IPAVLYSGGKSLANIVVDARVFSKFLSTLESGALASTVF 63
>sp|Q3KKP2|RL25_CHLTA 50S ribosomal protein L25 OS=Chlamydia trachomatis serovar A
(strain HAR-13 / ATCC VR-571B) GN=rplY PE=3 SV=1
Length = 185
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 16 IPSVLWALGMSLAQHSTDSDLFST--SVLESQLITSTTF 52
IP+VL++ G SLA D+ +FS S LES + ST F
Sbjct: 25 IPAVLYSGGKSLANIVVDARVFSKFLSTLESGALASTVF 63
>sp|Q1GZD7|DXS_METFK 1-deoxy-D-xylulose-5-phosphate synthase OS=Methylobacillus
flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=dxs
PE=3 SV=1
Length = 614
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 18 SVLWALGMSLAQHSTDSDLFSTSVLESQLITSTTFIHFINNNNNMEEANVVETKDGTISV 77
S+ ALGM++A T SD S +V+ +T+ +NN M+ +V D +S+
Sbjct: 120 SISAALGMAVAAQKTGSDRHSIAVIGDGAMTAGMAFEALNNAGAMDANILVILNDNDMSI 179
Query: 78 ASAFAA 83
+ A
Sbjct: 180 SPNVGA 185
>sp|Q54EP7|SRP72_DICDI Signal recognition particle 72 kDa protein homolog OS=Dictyostelium
discoideum GN=srp72 PE=3 SV=1
Length = 672
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 38 STSVLESQLITSTTFIHFINNNNNMEEANVVETKDGTISVASAFAAHQEAVQDRDHEFLS 97
+T ++SQL+ + I+ ++NNN + NV+E D ++S+ A + A+ ++ + L
Sbjct: 382 TTGSIKSQLLLAQ--IYLLDNNNVAKALNVLEKLDSSVSLRPGIVATKVALYEKSGD-LE 438
Query: 98 KAV 100
KAV
Sbjct: 439 KAV 441
>sp|A6R9K6|RPC3_AJECN DNA-directed RNA polymerase III subunit rpc3 OS=Ajellomyces
capsulata (strain NAm1 / WU24) GN=RPC82 PE=3 SV=1
Length = 649
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 20 LWALGMSLAQHSTDSDLFSTSVLESQLIT-STTFIHFINNNNNMEEANVVETKDGTISV 77
++ L L+ + + ++FST ++S +IT + F H ++E ++E++ GTI+V
Sbjct: 442 VYELEQHLSLLAQEPNIFSTRSMQSGMITWAVEFRHLARRLRHLEIERIIESRFGTIAV 500
>sp|Q9ZCC6|Y831_RICPR Uncharacterized deaminase RP831 OS=Rickettsia prowazekii (strain
Madrid E) GN=RP831 PE=3 SV=1
Length = 148
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 114 PFGAVVV--RSDEVVVSCHNMVLKHTDPTAHAEVTAV 148
P G V+V + +++VS HN + + +P HAE+ A+
Sbjct: 18 PVGVVIVCRLNQKIIVSSHNNIEEKKNPLCHAEIIAI 54
>sp|Q5L563|RL25_CHLAB 50S ribosomal protein L25 OS=Chlamydophila abortus (strain S26/3)
GN=rplY PE=3 SV=1
Length = 185
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 16 IPSVLWALGMSLAQHSTDSDLFST--SVLESQLITSTTFIHFINNNNNMEEANVVETKDG 73
IP+V+++ G SLA D+ +FS S LES ++ST F ++ +A V KD
Sbjct: 25 IPAVIYSGGKSLANIVVDAHVFSKFLSSLESGALSSTIF--SLSYEGRTIKALV---KDI 79
Query: 74 TISVASAFAAH---QEAVQDRD 92
V S H +E ++DRD
Sbjct: 80 QYHVTSYRVIHLDFEELIEDRD 101
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.128 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,357,059
Number of Sequences: 539616
Number of extensions: 1864064
Number of successful extensions: 6419
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 6386
Number of HSP's gapped (non-prelim): 57
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)