Query 039536
Match_columns 150
No_of_seqs 126 out of 1175
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 10:42:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039536.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039536hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10860 tRNA-specific adenosi 99.7 1.9E-16 4.1E-21 126.1 7.2 59 91-150 12-70 (172)
2 COG0590 CumB Cytosine/adenosin 99.6 1E-15 2.2E-20 119.4 6.3 61 89-150 5-66 (152)
3 TIGR02571 ComEB ComE operon pr 99.5 8.9E-14 1.9E-18 108.8 7.6 58 90-149 4-76 (151)
4 KOG1018 Cytosine deaminase FCY 99.5 1.1E-13 2.3E-18 110.6 6.1 63 88-150 7-70 (169)
5 cd01285 nucleoside_deaminase N 99.4 2E-13 4.4E-18 99.8 5.7 54 96-150 1-55 (109)
6 cd01286 deoxycytidylate_deamin 99.4 4.1E-13 8.8E-18 102.0 6.6 57 92-150 1-78 (131)
7 COG0117 RibD Pyrimidine deamin 99.4 4.9E-13 1.1E-17 105.2 7.3 57 90-150 4-61 (146)
8 PF00383 dCMP_cyt_deam_1: Cyti 99.4 5.4E-13 1.2E-17 94.4 6.4 59 90-149 2-61 (102)
9 PHA02588 cd deoxycytidylate de 99.4 6.2E-13 1.3E-17 105.5 7.3 57 91-149 2-90 (168)
10 cd01284 Riboflavin_deaminase-r 99.3 1.9E-12 4.1E-17 97.1 5.5 50 96-150 1-53 (115)
11 cd00786 cytidine_deaminase-lik 99.3 2E-12 4.3E-17 92.8 5.2 54 96-150 1-57 (96)
12 PLN02807 diaminohydroxyphospho 99.3 3.4E-12 7.3E-17 112.4 7.6 58 89-150 29-87 (380)
13 PRK10786 ribD bifunctional dia 99.3 6E-12 1.3E-16 109.6 7.0 56 91-150 2-58 (367)
14 TIGR00326 eubact_ribD riboflav 99.2 9.5E-12 2.1E-16 106.6 6.1 51 96-150 1-52 (344)
15 COG2131 ComEB Deoxycytidylate 98.6 8.4E-08 1.8E-12 77.0 6.8 58 90-149 7-86 (164)
16 cd01283 cytidine_deaminase Cyt 98.5 1.7E-07 3.6E-12 68.4 5.4 52 97-149 2-54 (112)
17 KOG3127 Deoxycytidylate deamin 98.3 1.4E-06 3E-11 73.2 6.6 64 84-149 59-143 (230)
18 TIGR01354 cyt_deam_tetra cytid 98.3 1.7E-06 3.6E-11 65.6 6.1 54 95-149 3-57 (127)
19 PRK06848 hypothetical protein; 97.3 0.0011 2.3E-08 51.6 7.3 57 90-148 5-62 (139)
20 PRK05578 cytidine deaminase; V 96.6 0.0096 2.1E-07 45.8 6.8 56 93-149 4-60 (131)
21 PRK12411 cytidine deaminase; P 96.3 0.017 3.7E-07 44.5 6.9 56 93-149 4-60 (132)
22 PRK08298 cytidine deaminase; V 95.7 0.048 1E-06 42.4 6.8 54 92-148 4-58 (136)
23 COG0295 Cdd Cytidine deaminase 95.1 0.088 1.9E-06 41.2 6.6 55 94-149 7-62 (134)
24 PLN02402 cytidine deaminase 94.6 0.12 2.7E-06 45.2 6.8 57 92-149 192-249 (303)
25 TIGR01355 cyt_deam_dimer cytid 94.4 0.14 3E-06 44.4 6.8 58 91-149 21-81 (283)
26 TIGR01355 cyt_deam_dimer cytid 93.9 0.22 4.8E-06 43.2 6.9 56 93-149 175-231 (283)
27 PRK09027 cytidine deaminase; P 93.6 0.24 5.3E-06 43.1 6.7 57 92-149 189-246 (295)
28 PLN02402 cytidine deaminase 90.3 1.1 2.5E-05 39.3 7.0 53 96-149 29-84 (303)
29 KOG0833 Cytidine deaminase [Nu 89.9 1.4 3.1E-05 36.0 6.8 37 112-149 41-78 (173)
30 PLN02182 cytidine deaminase 88.5 1.6 3.6E-05 38.9 6.7 38 111-149 64-104 (339)
31 PRK09027 cytidine deaminase; P 87.5 2.4 5.2E-05 37.0 7.0 38 111-149 69-109 (295)
32 PF08211 dCMP_cyt_deam_2: Cyti 83.2 3.5 7.7E-05 31.9 5.4 54 95-149 36-90 (124)
33 KOG2771 Subunit of tRNA-specif 81.0 2.5 5.4E-05 37.9 4.4 56 90-149 165-222 (344)
34 PF13540 RCC1_2: Regulator of 39.1 61 0.0013 18.4 3.4 20 114-133 9-28 (30)
35 KOG1783 Small nuclear ribonucl 34.2 1.3E+02 0.0027 21.8 5.0 68 48-129 6-73 (77)
36 TIGR00159 conserved hypothetic 31.2 44 0.00096 28.0 2.6 29 115-143 126-159 (211)
37 PF13382 Adenine_deam_C: Adeni 25.7 1.4E+02 0.003 24.0 4.5 32 92-130 74-105 (171)
38 PF13953 PapC_C: PapC C-termin 24.1 28 0.00061 23.2 0.2 19 109-127 7-26 (68)
39 PF02457 DisA_N: DisA bacteria 23.4 51 0.0011 25.0 1.5 19 116-134 57-75 (122)
40 PF11286 DUF3087: Protein of u 22.5 14 0.0003 30.0 -1.8 25 5-29 11-35 (165)
41 COG1624 Uncharacterized conser 21.7 1.1E+02 0.0024 26.2 3.3 28 116-143 174-207 (247)
No 1
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=99.66 E-value=1.9e-16 Score=126.07 Aligned_cols=59 Identities=31% Similarity=0.451 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHhcccCCCCCcEEEEEeeCCeEEEEeecCcccCCCCCchHHHHHhhC
Q 039536 91 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150 (150)
Q Consensus 91 ~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAEm~AIr~ 150 (150)
+|++||++|+++|++|...|+ .|||||||++|+||++|+|+....+||+.|||++||++
T Consensus 12 ~~~~~m~~A~~~A~~a~~~g~-~pvGAVIV~~g~IIa~g~N~~~~~~d~~~HAEi~Ai~~ 70 (172)
T PRK10860 12 SHEYWMRHALTLAKRAWDERE-VPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 70 (172)
T ss_pred cHHHHHHHHHHHHHHhhccCC-CCEEEEEEeCCEEEEEeeCCCCCCCCCccCHHHHHHHH
Confidence 478899999999999999886 99999999999999999999999999999999999973
No 2
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=1e-15 Score=119.38 Aligned_cols=61 Identities=39% Similarity=0.660 Sum_probs=57.2
Q ss_pred chhHHHHHHHHHHHHHhcccCCCCCcEEEEEee-CCeEEEEeecCcccCCCCCchHHHHHhhC
Q 039536 89 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150 (150)
Q Consensus 89 ~~~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAEm~AIr~ 150 (150)
.++|..||++|+++|+++.+.|+ .|||||||+ +|+||+.|+|+..+.+|||+|||+.|||+
T Consensus 5 ~~~~~~~m~~al~~A~~a~~~ge-~PvGaviV~~~~~ii~~~~N~~~~~~dptaHAEi~air~ 66 (152)
T COG0590 5 SEKDEDFMREALKEAKKAGDEGE-VPVGAVIVDADGEIIARGHNRREEDNDPTAHAEILAIRA 66 (152)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCC-CCEEEEEEcCCCCEEEEecCccccCCCccccHHHHHHHH
Confidence 46789999999999999997776 999999999 99999999999999999999999999984
No 3
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=99.49 E-value=8.9e-14 Score=108.75 Aligned_cols=58 Identities=22% Similarity=0.236 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCCcEEEEEeeCCeEEEEeecCcccCC---------------CCCchHHHHHhh
Q 039536 90 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHT---------------DPTAHAEVTAVR 149 (150)
Q Consensus 90 ~~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~dGeIIa~G~N~~~~~~---------------DpTaHAEm~AIr 149 (150)
++|++||++|+++|+++.. + +.|||||||+||+||+.|+|+...+. +++.|||++||+
T Consensus 4 ~~d~~fM~~A~~~A~rs~~-~-~~~VGAVIV~d~~IIs~GyN~~~~g~~~~~~~~~~~~~~~~~~~~HAE~nAI~ 76 (151)
T TIGR02571 4 KWDQYFMAQSHLLALRSTC-T-RLSVGATIVRDKRIIAGGYNGSVAGGVHCIDEGCYVVDGHCVRTIHAEMNALL 76 (151)
T ss_pred cHHHHHHHHHHHHHHhcCC-C-CCCEEEEEEECCEEEEEEECCCCCCCCccccccccccccccCCccCHHHHHHH
Confidence 5688999999999999853 3 48999999999999999999986544 589999999996
No 4
>KOG1018 consensus Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism]
Probab=99.45 E-value=1.1e-13 Score=110.62 Aligned_cols=63 Identities=51% Similarity=0.707 Sum_probs=58.6
Q ss_pred CchhHHHHHHHHHHHHHhcccCCCCCcEEEEEee-CCeEEEEeecCcccCCCCCchHHHHHhhC
Q 039536 88 VQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150 (150)
Q Consensus 88 ~~~~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAEm~AIr~ 150 (150)
..+.|..||+.|+++|+++.+.|.+.|||||+|+ ||+|+++|+|.+.+.+|+|+|||+.+|+.
T Consensus 7 ~~~~~~~~m~~a~eea~ka~d~~~~~pvg~vlV~~~g~v~a~g~n~~~~~~d~t~HaE~~~I~~ 70 (169)
T KOG1018|consen 7 LSDHDIAFMVEAVEEAKKALDEGDEVPVGAVLVHMDGKVLASGGNMVNEKKDPTAHAEVIAIRE 70 (169)
T ss_pred cccccHHHHHHHHHHHHhhccCCCCCceEEEEEeCCCeEEecccceecccCCcchhhHHHHHhh
Confidence 3556899999999999999999966999999999 99999999999999999999999999974
No 5
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=99.43 E-value=2e-13 Score=99.76 Aligned_cols=54 Identities=44% Similarity=0.668 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEEeeC-CeEEEEeecCcccCCCCCchHHHHHhhC
Q 039536 96 LSKAVEEAYKGVECGDGGPFGAVVVRS-DEVVVSCHNMVLKHTDPTAHAEVTAVRE 150 (150)
Q Consensus 96 Mr~AIelA~kA~~~Ge~~PVGAVIV~d-GeIIa~G~N~~~~~~DpTaHAEm~AIr~ 150 (150)
|++|+++|+++...|+ .||||+||++ |+||+.|+|...+.+|++.|||++||++
T Consensus 1 m~~al~~a~~~~~~~~-~~vgaviv~~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~ 55 (109)
T cd01285 1 MRLAIELARKALAEGE-VPFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRN 55 (109)
T ss_pred CHHHHHHHHHHHHcCC-CcEEEEEEeCCCEEEEEEeCCCCCCCCCcccHHHHHHHH
Confidence 6899999999988885 9999999985 9999999999998899999999999974
No 6
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=99.41 E-value=4.1e-13 Score=102.03 Aligned_cols=57 Identities=25% Similarity=0.263 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHhcccCCCCCcEEEEEeeCCeEEEEeecCcc---------------------cCCCCCchHHHHHhhC
Q 039536 92 DHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVL---------------------KHTDPTAHAEVTAVRE 150 (150)
Q Consensus 92 D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~dGeIIa~G~N~~~---------------------~~~DpTaHAEm~AIr~ 150 (150)
|++||++|+++|+++... +.|||||||++|+||+.|+|+.. ...+++.|||++||++
T Consensus 1 d~~~m~~A~~~A~~s~~~--~~~VGAViv~~~~iI~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~ 78 (131)
T cd01286 1 DEYFMAIARLAALRSTCP--RRQVGAVIVKDKRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKCCRTVHAEQNAILQ 78 (131)
T ss_pred CHHHHHHHHHHHHHcCCC--CCCEEEEEEECCEEEEEeeCCCCCCCCCcccccccccccccccccccCCCCCHHHHHHHH
Confidence 467999999999998753 49999999999999999999975 3568999999999963
No 7
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=99.41 E-value=4.9e-13 Score=105.22 Aligned_cols=57 Identities=30% Similarity=0.389 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHHHHHhcccC-CCCCcEEEEEeeCCeEEEEeecCcccCCCCCchHHHHHhhC
Q 039536 90 DRDHEFLSKAVEEAYKGVEC-GDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150 (150)
Q Consensus 90 ~~D~~~Mr~AIelA~kA~~~-Ge~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAEm~AIr~ 150 (150)
+.|+.||++|+++|+++... .+|++||||||+||+||++|++... +.+|||+.||++
T Consensus 4 ~~~~~~M~~Al~lA~k~~g~T~pNP~VG~VIV~~~~Ivg~G~h~~a----G~pHAEv~Al~~ 61 (146)
T COG0117 4 ELDERYMERALELAEKGQGTTSPNPSVGCVIVKDGEIVGEGYHEKA----GGPHAEVCALRM 61 (146)
T ss_pred hHHHHHHHHHHHHHHhcCCcCCCCCceeEEEEECCEEEeeeecCCC----CCCcHHHHHHHH
Confidence 46899999999999997765 5789999999999999999999873 567999999974
No 8
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=99.41 E-value=5.4e-13 Score=94.44 Aligned_cols=59 Identities=36% Similarity=0.573 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCCcEEEEEee-CCeEEEEeecCcccCCCCCchHHHHHhh
Q 039536 90 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 149 (150)
Q Consensus 90 ~~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAEm~AIr 149 (150)
++|++||++|+++|+++...+. .|||||||+ +|++|+.|+|....+.+++.|||++||.
T Consensus 2 ~~~~~~m~~a~~~a~~s~~~~~-~~vgaviv~~~~~~i~~g~n~~~~~~~~~~HAE~~Ai~ 61 (102)
T PF00383_consen 2 EWDEEFMRIAIELAKRSRPCGN-FPVGAVIVDPDGKIIATGYNGEPPGKNPTIHAEMNAIR 61 (102)
T ss_dssp CHHHHHHHHHHHHHHTHBTTTS-SSEEEEEEETTTEEEEEEESBHHSTTGGTB-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCC-CCEEEEEEeccCccEEEEeeeeeeeccccccchhhhhh
Confidence 4689999999999999985554 999999999 8999999999999889999999999986
No 9
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=99.40 E-value=6.2e-13 Score=105.48 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHhcccCCCCCcEEEEEeeCCeEEEEeecCcccC--------------------------------CC
Q 039536 91 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKH--------------------------------TD 138 (150)
Q Consensus 91 ~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~dGeIIa~G~N~~~~~--------------------------------~D 138 (150)
.|.+||++|+++|+++.. + ..|||||||+||+||+.|||....+ .+
T Consensus 2 ~d~~fM~~A~~~A~~s~~-~-~~~VGAVIV~~~~Iis~GyNg~p~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T PHA02588 2 KDSTYLQIAYLVSQESKC-V-SWKVGAVIEKNGRIISTGYNGTPAGGVNCCDHANEQGWLDDEGKLKKEHRPEHSAWSSK 79 (168)
T ss_pred CHHHHHHHHHHHHHhcCC-C-CCCEEEEEEECCEEEEEEeCCCCcCCcccccccccccccccccccccccccccccccCC
Confidence 478899999999999964 4 4899999999999999999987543 36
Q ss_pred CCchHHHHHhh
Q 039536 139 PTAHAEVTAVR 149 (150)
Q Consensus 139 pTaHAEm~AIr 149 (150)
++.|||++||+
T Consensus 80 ~~~HAE~nAi~ 90 (168)
T PHA02588 80 NEIHAELNAIL 90 (168)
T ss_pred CCccHHHHHHH
Confidence 78999999996
No 10
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=99.33 E-value=1.9e-12 Score=97.08 Aligned_cols=50 Identities=32% Similarity=0.416 Sum_probs=44.4
Q ss_pred HHHHHHHHHhc--ccCCCCCcEEEEEeeC-CeEEEEeecCcccCCCCCchHHHHHhhC
Q 039536 96 LSKAVEEAYKG--VECGDGGPFGAVVVRS-DEVVVSCHNMVLKHTDPTAHAEVTAVRE 150 (150)
Q Consensus 96 Mr~AIelA~kA--~~~Ge~~PVGAVIV~d-GeIIa~G~N~~~~~~DpTaHAEm~AIr~ 150 (150)
|++|+++|+++ ...|+ .|||||||++ |+||++|+|+.. ++.|||+.||++
T Consensus 1 m~~al~~A~~~~~~~~~~-~pvGaviv~~~g~iv~~g~n~~~----~~~HAE~~ai~~ 53 (115)
T cd01284 1 MRRALELAEKGRGLTSPN-PPVGCVIVDDDGEIVGEGYHRKA----GGPHAEVNALAS 53 (115)
T ss_pred CHHHHHHHHhcccccCCC-CCEEEEEEeCCCeEEEEecCCCC----CcccHHHHHHHH
Confidence 78999999999 66665 9999999985 999999999974 899999999974
No 11
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=99.32 E-value=2e-12 Score=92.78 Aligned_cols=54 Identities=24% Similarity=0.165 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcc-cCCCCCcEEEEEeeC--CeEEEEeecCcccCCCCCchHHHHHhhC
Q 039536 96 LSKAVEEAYKGV-ECGDGGPFGAVVVRS--DEVVVSCHNMVLKHTDPTAHAEVTAVRE 150 (150)
Q Consensus 96 Mr~AIelA~kA~-~~Ge~~PVGAVIV~d--GeIIa~G~N~~~~~~DpTaHAEm~AIr~ 150 (150)
|+.|+++|+++. ..+ +.||||+||++ |++++.|+|.....+|++.|||++||++
T Consensus 1 m~~a~~~a~~a~~~~~-~~pVGaviv~~~~g~ii~~g~n~~~~~~~~~~HAE~~ai~~ 57 (96)
T cd00786 1 MTEALKAADLGYAKES-NFQVGACLVNKKDGGKVGRGCNIENAAYSMCNHAERTALFN 57 (96)
T ss_pred CHHHHHHHHhccCCCC-CCCEEEEEEEeCCCCeEeeeEeccCCCCCCeeCHHHHHHHH
Confidence 789999999994 555 49999999985 9999999999999999999999999973
No 12
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=99.32 E-value=3.4e-12 Score=112.36 Aligned_cols=58 Identities=29% Similarity=0.422 Sum_probs=50.0
Q ss_pred chhHHHHHHHHHHHHHhcccCC-CCCcEEEEEeeCCeEEEEeecCcccCCCCCchHHHHHhhC
Q 039536 89 QDRDHEFLSKAVEEAYKGVECG-DGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150 (150)
Q Consensus 89 ~~~D~~~Mr~AIelA~kA~~~G-e~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAEm~AIr~ 150 (150)
...|.+||++|+++|+++...+ +++|||||||+||+||++|+|+.. +++|||++||++
T Consensus 29 ~~~d~~~M~~Al~lA~~~~~~~~~np~VGaViV~~g~Ii~~g~n~~~----g~~HAEi~Ai~~ 87 (380)
T PLN02807 29 GDDDSFYMRRCVELARKAIGCTSPNPMVGCVIVKDGRIVGEGFHPKA----GQPHAEVFALRD 87 (380)
T ss_pred CchHHHHHHHHHHHHHhhcccCCCCCCEEEEEEECCEEEEEEeCCCC----CCcCHHHHHHHH
Confidence 3567899999999999998765 357899999999999999999863 458999999974
No 13
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=99.29 E-value=6e-12 Score=109.62 Aligned_cols=56 Identities=27% Similarity=0.342 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHhcccC-CCCCcEEEEEeeCCeEEEEeecCcccCCCCCchHHHHHhhC
Q 039536 91 RDHEFLSKAVEEAYKGVEC-GDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150 (150)
Q Consensus 91 ~D~~~Mr~AIelA~kA~~~-Ge~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAEm~AIr~ 150 (150)
.|++||++|+++|+++... .+++|||||||+||+||++|+|... +++|||++||++
T Consensus 2 ~d~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~----g~~HAE~~ai~~ 58 (367)
T PRK10786 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRA----GEPHAEVHALRM 58 (367)
T ss_pred CHHHHHHHHHHHHHhcCcCCCCCCCEEEEEEeCCEEEEEEeCCCC----CCCCHHHHHHHH
Confidence 3688999999999999754 3459999999999999999999763 458999999974
No 14
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=99.25 E-value=9.5e-12 Score=106.63 Aligned_cols=51 Identities=29% Similarity=0.393 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcccCC-CCCcEEEEEeeCCeEEEEeecCcccCCCCCchHHHHHhhC
Q 039536 96 LSKAVEEAYKGVECG-DGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150 (150)
Q Consensus 96 Mr~AIelA~kA~~~G-e~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAEm~AIr~ 150 (150)
|++|+++|+++...+ +++|||||||+||+||++|+|+. .+++|||++||++
T Consensus 1 m~~a~~~a~~~~~~~~~~~~vGaviv~~~~ii~~g~n~~----~~~~HAE~~ai~~ 52 (344)
T TIGR00326 1 MNRALDLAKKGQGTTHPNPLVGCVIVKNGEIVGEGAHQK----AGEPHAEVHALRQ 52 (344)
T ss_pred CHHHHHHHHhcCCCCCCCCCEEEEEEeCCEEEEEeeCCC----CCCCCHHHHHHHH
Confidence 789999999999764 35899999999999999999986 4789999999974
No 15
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=98.64 E-value=8.4e-08 Score=76.96 Aligned_cols=58 Identities=26% Similarity=0.243 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCCcEEEEEeeCCeEEEEeecCcccCCC----------------------CCchHHHHH
Q 039536 90 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTD----------------------PTAHAEVTA 147 (150)
Q Consensus 90 ~~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~dGeIIa~G~N~~~~~~D----------------------pTaHAEm~A 147 (150)
.+|++||+.|.-.|.++-.. ..-||||||+||+||+.|||......+ .+-|||++|
T Consensus 7 ~wdeyfm~~A~l~a~Rstc~--r~~VGAvIvkd~rIiatGYNG~p~g~~~c~~~g~~~~~~~~~~~~~~~~r~vHAE~NA 84 (164)
T COG2131 7 MWDEYFMAIAELVALRSTCP--RRQVGAVIVKDGRIIATGYNGAPSGEDHCIDRGCLRDKVVFVTTCGHCCRTLHAEQNA 84 (164)
T ss_pred HHHHHHHHHHHHHHHHccCc--ccceeEEEEeCCeEEEeecCCCCcccCCcCccCceecccccccchhHHHHHHHHHHHH
Confidence 58999999999999998764 378999999999999999998876543 256999999
Q ss_pred hh
Q 039536 148 VR 149 (150)
Q Consensus 148 Ir 149 (150)
|-
T Consensus 85 il 86 (164)
T COG2131 85 IL 86 (164)
T ss_pred HH
Confidence 83
No 16
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=98.53 E-value=1.7e-07 Score=68.42 Aligned_cols=52 Identities=19% Similarity=0.064 Sum_probs=44.1
Q ss_pred HHHHHHHHhcccCCCCCcEEEEEee-CCeEEEEeecCcccCCCCCchHHHHHhh
Q 039536 97 SKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 149 (150)
Q Consensus 97 r~AIelA~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAEm~AIr 149 (150)
++|++.++++.....+.||||+|+. +|+|+ .|+|......+++.|||+.||+
T Consensus 2 ~~a~~~~~~a~~~~~~~~vga~i~~~~g~i~-~G~n~e~~~~~~~~hAE~~ai~ 54 (112)
T cd01283 2 EAALAAAEFAYAPYSNFTVGAALLTKDGRIF-TGVNVENASYGLTLCAERTAIG 54 (112)
T ss_pred HHHHHHHHhCcCCCCCCeEEEEEEECCCCEE-EeEEeecCCCCCCcCHHHHHHH
Confidence 4678888888544345999999997 69998 9999998889999999999986
No 17
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=98.32 E-value=1.4e-06 Score=73.15 Aligned_cols=64 Identities=20% Similarity=0.211 Sum_probs=52.2
Q ss_pred ccccCchhHHHHHHHHHHHHHhcccCCCCCcEEEEEee-CCeEEEEeecCcccCCC--------------------CCch
Q 039536 84 HQEAVQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTD--------------------PTAH 142 (150)
Q Consensus 84 ~~e~~~~~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~~D--------------------pTaH 142 (150)
.+....++|.+||+.|.-.|+++.+. +..|||+||. ++.||+.|||....+.+ -+-|
T Consensus 59 k~~~~lswd~yFM~iA~LsA~RSkDp--ntqVGaCiv~~~n~iVg~GYNgfP~gc~~~vfp~~~~~~~~~~~~k~~yv~H 136 (230)
T KOG3127|consen 59 KRNGYLSWDDYFMAIAFLSAKRSKDP--NTQVGACIVDRENRIVGTGYNGFPRGCSDDVFPWCKAALSTNLDLKYCYVVH 136 (230)
T ss_pred ccccCccHHHHHHHHHHHHHHhccCc--ccceeeEEEcCCCEEEEeccCCCcCCCCCCCCcccccccccCCCcceEEEee
Confidence 44556789999999999999998875 4799977775 89999999998765532 3579
Q ss_pred HHHHHhh
Q 039536 143 AEVTAVR 149 (150)
Q Consensus 143 AEm~AIr 149 (150)
||.+||-
T Consensus 137 AE~NAi~ 143 (230)
T KOG3127|consen 137 AEENAIL 143 (230)
T ss_pred hHHHHHH
Confidence 9999984
No 18
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=98.30 E-value=1.7e-06 Score=65.62 Aligned_cols=54 Identities=17% Similarity=0.076 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEEee-CCeEEEEeecCcccCCCCCchHHHHHhh
Q 039536 95 FLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 149 (150)
Q Consensus 95 ~Mr~AIelA~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAEm~AIr 149 (150)
..+.|.+.++++...-.+.||||+|+. ||+|+. |.|......+++.|||..||+
T Consensus 3 l~~~a~~a~~~ay~PyS~~~vgAa~~~~~G~i~~-G~n~e~~~~~~s~~AE~~Ai~ 57 (127)
T TIGR01354 3 LFKAAQEARKNAYAPYSNFKVGAALLTKDGRIFT-GVNVENASYPLTICAERSAIG 57 (127)
T ss_pred HHHHHHHHHHhcCCCcCCCeEEEEEEeCCCCEEE-EEeecccCCCCCcCHHHHHHH
Confidence 467888888888865445899999996 799887 999998889999999999986
No 19
>PRK06848 hypothetical protein; Validated
Probab=97.32 E-value=0.0011 Score=51.55 Aligned_cols=57 Identities=19% Similarity=0.138 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCCcEEEEEee-CCeEEEEeecCcccCCCCCchHHHHHh
Q 039536 90 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAV 148 (150)
Q Consensus 90 ~~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAEm~AI 148 (150)
+++.+.+++|.+..++++.. .+.+|||++.. ||+|+ .|.|-.......+-|||..||
T Consensus 5 ~~~~~L~~~A~~a~~~ay~p-s~f~VgAa~l~~~G~i~-~G~NvEnas~~~tiCAEr~Ai 62 (139)
T PRK06848 5 SEDYELIKAAEKVIEKRYRN-DWHHVGAALRTKTGRIY-AAVHLEAYVGRITVCAEAIAI 62 (139)
T ss_pred HHHHHHHHHHHHHHHhccCC-CCCcEEEEEEeCCCCEE-EEEEeecCCCCcccCHHHHHH
Confidence 45667899999999999875 46999999996 88876 999977666778999999987
No 20
>PRK05578 cytidine deaminase; Validated
Probab=96.58 E-value=0.0096 Score=45.78 Aligned_cols=56 Identities=23% Similarity=0.203 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhcccCCCCCcEEEEEee-CCeEEEEeecCcccCCCCCchHHHHHhh
Q 039536 93 HEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 149 (150)
Q Consensus 93 ~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAEm~AIr 149 (150)
++.+++|.+..++++..-.+.+|||++.. ||+|. .|.|-......++-|||..||-
T Consensus 4 ~~L~~~a~~~~~~ay~PyS~f~Vgaa~~~~~G~i~-~G~nvEna~~~~~~CAE~~Ai~ 60 (131)
T PRK05578 4 KELIEAAIEASEKAYAPYSKFPVGAALLTDDGRIY-TGCNIENASYGLTNCAERTAIF 60 (131)
T ss_pred HHHHHHHHHHHHhcCCCcCCCceEEEEEeCCCCEE-EEEEeeCccccCCcCHHHHHHH
Confidence 35678888888888865445899999997 78865 8999665556789999999873
No 21
>PRK12411 cytidine deaminase; Provisional
Probab=96.34 E-value=0.017 Score=44.46 Aligned_cols=56 Identities=18% Similarity=0.093 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhcccCCCCCcEEEEEee-CCeEEEEeecCcccCCCCCchHHHHHhh
Q 039536 93 HEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 149 (150)
Q Consensus 93 ~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAEm~AIr 149 (150)
.+..++|.+.+++++..-.+.+|||++.. ||+|+ .|.|-......++-|||..||-
T Consensus 4 ~~L~~~a~~~~~~ay~pyS~~~VgAa~~t~~G~i~-~G~nvEn~s~~~s~CAE~~Ai~ 60 (132)
T PRK12411 4 KQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALF 60 (132)
T ss_pred HHHHHHHHHHHHhcCCCccCCceEEEEEeCCCCEE-EEEEeecCCCCcCcCHHHHHHH
Confidence 35678888888888865334899999986 88877 9999766667789999999873
No 22
>PRK08298 cytidine deaminase; Validated
Probab=95.68 E-value=0.048 Score=42.37 Aligned_cols=54 Identities=7% Similarity=-0.028 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhcccCCCCCcEEEEEee-CCeEEEEeecCcccCCCCCchHHHHHh
Q 039536 92 DHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAV 148 (150)
Q Consensus 92 D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAEm~AI 148 (150)
+++.++.|.+..++++.. .. +|||.|.. ||+|+ .|.|-...+...+.-||..||
T Consensus 4 ~~~L~~~A~~a~~~aY~P-YS-~VgAAllt~dG~i~-tG~NvEnas~~~t~CAEr~Ai 58 (136)
T PRK08298 4 EQALYDVAKQLIEQRYPN-GW-GGAAAMRVEDGTIL-TSVAPEVINASTELCMETGAI 58 (136)
T ss_pred HHHHHHHHHHHHHhccCC-CC-ceeEEEEeCCCCEE-EEEeecCCCCCcchhHHHHHH
Confidence 566788888888888744 33 99999986 88977 999976666678999999987
No 23
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=95.12 E-value=0.088 Score=41.20 Aligned_cols=55 Identities=20% Similarity=0.082 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhcccCCCCCcEEEEEee-CCeEEEEeecCcccCCCCCchHHHHHhh
Q 039536 94 EFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 149 (150)
Q Consensus 94 ~~Mr~AIelA~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAEm~AIr 149 (150)
..+..+.+.+..|+..=...+|||++.- ||+|+ .|.|-......-|-|||..||-
T Consensus 7 ~l~~~a~~a~~~ay~PYS~F~VGAa~~t~~G~i~-tG~NiEnasy~~t~CAErsAI~ 62 (134)
T COG0295 7 ELFALAPEAAANAYAPYSKFKVGAALRTKDGRIY-TGANVENASYGLTVCAERSAIF 62 (134)
T ss_pred HHHHHHHHHHHhccCcccCCcEEEEEEeCCCCEE-EEEeeecccccchhhHHHHHHH
Confidence 4455566666666654345899999996 67755 9999887788889999999984
No 24
>PLN02402 cytidine deaminase
Probab=94.57 E-value=0.12 Score=45.19 Aligned_cols=57 Identities=18% Similarity=0.169 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhcccCCCCCcEEEEEee-CCeEEEEeecCcccCCCCCchHHHHHhh
Q 039536 92 DHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 149 (150)
Q Consensus 92 D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAEm~AIr 149 (150)
....+++|++.+++++..=.+.||||.|+. ||+|+ .|.|-.....+++..||..||-
T Consensus 192 ~~~L~~~A~~a~~~sYaPYS~f~VGaal~~~dG~i~-~G~nvENAay~~slcAer~Ai~ 249 (303)
T PLN02402 192 SDDLKNEALEAANKSHAPYSNCPSGVALMDCEGKVY-RGSYMESAAYNPSMGPVQAALV 249 (303)
T ss_pred HHHHHHHHHHHHHcccCCccCCceeEEEEeCCCCEE-EEEEEEcCCCCCcccHHHHHHH
Confidence 356788999999999865445899999997 78866 8999888888999999999974
No 25
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=94.44 E-value=0.14 Score=44.39 Aligned_cols=58 Identities=16% Similarity=-0.100 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHhcccCCCCCcEEEEEee-CCeEEEEeecCc--ccCCCCCchHHHHHhh
Q 039536 91 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMV--LKHTDPTAHAEVTAVR 149 (150)
Q Consensus 91 ~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~--~~~~DpTaHAEm~AIr 149 (150)
+++..+.+|.+.+++|+..=.+.+|||++.. ||+|. .|.|-. ......+-|||..||-
T Consensus 21 ~~~~L~~~a~~a~~~AyaPYS~F~VGAall~~~G~iy-~GvNvE~~nas~~~tiCAEr~Ai~ 81 (283)
T TIGR01355 21 DPKLLPKLIPKAASYARAPISKFNVGAVGRGSSGRFY-LGVNVEFPGLPLHHSIHAEQFLIS 81 (283)
T ss_pred hHHHHHHHHHHHHhcCcCCccCCeeeEEEEeCCCCEE-EEEEeccCCCCCCccccHHHHHHH
Confidence 3446788888888888865445899999986 88866 899954 2223458899999873
No 26
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=93.90 E-value=0.22 Score=43.19 Aligned_cols=56 Identities=13% Similarity=0.125 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhcccCCCCCcEEEEEee-CCeEEEEeecCcccCCCCCchHHHHHhh
Q 039536 93 HEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 149 (150)
Q Consensus 93 ~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAEm~AIr 149 (150)
..++++|++.+++++..=.+.||||.|.. ||+|. .|.|-.....+++-.||..||-
T Consensus 175 ~~l~~~A~~a~~~sYaPYS~f~vgaal~~~~g~i~-~G~nvENAay~~slcaer~Ai~ 231 (283)
T TIGR01355 175 SHLKQQALKAANRSYAPYSKSPSGVALLDKEGKVY-RGWYIESAAFNPSLGPVQAALV 231 (283)
T ss_pred HHHHHHHHHHHHhccCCCcCCceeEEEEeCCCCEE-EEEEeecCCCCCcccHHHHHHH
Confidence 45888999999999866445899999997 78866 8999888889999999999983
No 27
>PRK09027 cytidine deaminase; Provisional
Probab=93.62 E-value=0.24 Score=43.12 Aligned_cols=57 Identities=9% Similarity=0.050 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhcccCCCCCcEEEEEee-CCeEEEEeecCcccCCCCCchHHHHHhh
Q 039536 92 DHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 149 (150)
Q Consensus 92 D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAEm~AIr 149 (150)
+....++|++.+.+++..=.+.|+||+|.. ||+|. .|.|-.....+|+-.||..||-
T Consensus 189 ~~~L~~~A~~aa~~SYaPYS~f~vGaAl~~~dG~i~-~G~nvENAAynpslcaer~Al~ 246 (295)
T PRK09027 189 GDPLIQAALDAANRSHAPYSQSYSGVALETKDGRIY-TGRYAENAAFNPSLPPLQGALN 246 (295)
T ss_pred HHHHHHHHHHHHHhccCCccCCceeEEEEeCCCCEE-EEEEEEcCCCCCcccHHHHHHH
Confidence 346788999999999865445899999996 88877 8999888888999999999873
No 28
>PLN02402 cytidine deaminase
Probab=90.26 E-value=1.1 Score=39.27 Aligned_cols=53 Identities=17% Similarity=-0.006 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEEee-CCeEEEEeecCcccCCCC--CchHHHHHhh
Q 039536 96 LSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDP--TAHAEVTAVR 149 (150)
Q Consensus 96 Mr~AIelA~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~~Dp--TaHAEm~AIr 149 (150)
+.++-...+.|+..=.+.+|||++.. ||+|. .|.|-....... |-|||..||-
T Consensus 29 ~~l~~~A~~~AyaPYS~F~VGAa~l~~~G~i~-~GvNVEnasy~l~~tiCAEr~Ai~ 84 (303)
T PLN02402 29 PSLVKSAQSLARPPISKYHVGAVGLGSSGRIF-LGVNLEFPGLPLHHSVHAEQFLIT 84 (303)
T ss_pred HHHHHHHHHhcCCCCCCCeeeEEEEeCCCCEE-EEEeeecCCCCCCCcccHHHHHHH
Confidence 33333333444433234899999986 88865 899965444333 8899999873
No 29
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism]
Probab=89.91 E-value=1.4 Score=35.99 Aligned_cols=37 Identities=19% Similarity=-0.001 Sum_probs=30.5
Q ss_pred CCcEEEEEee-CCeEEEEeecCcccCCCCCchHHHHHhh
Q 039536 112 GGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 149 (150)
Q Consensus 112 ~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAEm~AIr 149 (150)
+.||||++.- +|+|. .|.|=....-.++-|||..||-
T Consensus 41 ~fkVGA~~r~ssGrif-~G~NVEn~~~~~sIcAEr~ai~ 78 (173)
T KOG0833|consen 41 KFKVGAAGRASSGRIF-LGVNVENASYHHSICAERFAIA 78 (173)
T ss_pred CCceEEEEEecCCcEE-EeeeecccCCCCcccHHHHHHH
Confidence 4799999996 78866 8999766677889999998874
No 30
>PLN02182 cytidine deaminase
Probab=88.52 E-value=1.6 Score=38.90 Aligned_cols=38 Identities=26% Similarity=0.086 Sum_probs=29.2
Q ss_pred CCCcEEEEEee-CCeEEEEeecCcccCCCC--CchHHHHHhh
Q 039536 111 DGGPFGAVVVR-SDEVVVSCHNMVLKHTDP--TAHAEVTAVR 149 (150)
Q Consensus 111 e~~PVGAVIV~-dGeIIa~G~N~~~~~~Dp--TaHAEm~AIr 149 (150)
.+.+|||++.. +|+|. .|.|-....... +-|||..||-
T Consensus 64 S~F~VGAa~l~~sG~iy-~GvNVEnas~pl~~tICAEr~AI~ 104 (339)
T PLN02182 64 SKYKVGAVGRASSGRVY-LGVNVDFPGLPLHHSIHAEQFLVT 104 (339)
T ss_pred cCCeeeEEEEeCCCCEE-EEEEeecCCCccCCccCHHHHHHH
Confidence 34899999986 88865 899966544333 8999999874
No 31
>PRK09027 cytidine deaminase; Provisional
Probab=87.46 E-value=2.4 Score=37.05 Aligned_cols=38 Identities=26% Similarity=0.223 Sum_probs=28.9
Q ss_pred CCCcEEEEEee-CCeEEEEeecCccc--CCCCCchHHHHHhh
Q 039536 111 DGGPFGAVVVR-SDEVVVSCHNMVLK--HTDPTAHAEVTAVR 149 (150)
Q Consensus 111 e~~PVGAVIV~-dGeIIa~G~N~~~~--~~DpTaHAEm~AIr 149 (150)
.+.+|||++.. +|+|. .|.|-... ....+-|||..||-
T Consensus 69 S~F~VGAa~~~~sG~iy-~GvNvE~~~~s~~~tiCAEr~Ai~ 109 (295)
T PRK09027 69 SHFNVGAIARGVSGNFY-FGANMEFAGAALQQTVHAEQSAIS 109 (295)
T ss_pred CCCcEEEEEEeCCCCEE-EEEeeccCCCCCCCCcCHHHHHHH
Confidence 45899999986 88866 89996543 23468999999873
No 32
>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase. Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion.; GO: 0004126 cytidine deaminase activity, 0008270 zinc ion binding; PDB: 1CTU_A 1AF2_A 1ALN_A 1CTT_A 4EG2_C.
Probab=83.17 E-value=3.5 Score=31.89 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEEee-CCeEEEEeecCcccCCCCCchHHHHHhh
Q 039536 95 FLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 149 (150)
Q Consensus 95 ~Mr~AIelA~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAEm~AIr 149 (150)
..++|++.|.++...=...|.|++|.. +|+|. .|.+-...-.+|+-.+.-.|+-
T Consensus 36 l~~~A~~Aa~~syaPYS~~~sGvAL~~~~G~i~-~G~y~EnAAfNPSl~PlQ~AL~ 90 (124)
T PF08211_consen 36 LVQAALEAANRSYAPYSKCPSGVALLTSDGRIY-TGRYAENAAFNPSLPPLQAALV 90 (124)
T ss_dssp HHHHHHHHHCT-B-TTT---EEEEEEETTS-EE-EEE-B--TTSTT-B-HHHHHHH
T ss_pred HHHHHHHHHHhccCCccCCceeEEEEeCCCCEE-EEEEEeecccCCChHHHHHHHH
Confidence 677899999999865334899999995 88876 6666665677899998887763
No 33
>KOG2771 consensus Subunit of tRNA-specific adenosine-34 deaminase [RNA processing and modification]
Probab=81.03 E-value=2.5 Score=37.90 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCCcEEEEEee--CCeEEEEeecCcccCCCCCchHHHHHhh
Q 039536 90 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR--SDEVVVSCHNMVLKHTDPTAHAEVTAVR 149 (150)
Q Consensus 90 ~~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~--dGeIIa~G~N~~~~~~DpTaHAEm~AIr 149 (150)
.....+|+.+|++|..+... .|+|++|++ ...|++.|.-.+-. .+|..|.-|++++
T Consensus 165 ~~~~ri~e~~I~~a~~~~~~---~~~~a~I~~p~~~~Via~~~~~~~~-~~P~eh~~mv~v~ 222 (344)
T KOG2771|consen 165 GEIARIGELLIAMATDGHAS---RPVSAAIVDPVMDRVIAAGTGEVCA-YNPIEHCVMVLVH 222 (344)
T ss_pred HHHHHHHHHHHHHHhhhccc---cCccceecCCccceEEecCCCcccc-cCcHHHHHHHHHH
Confidence 44677899999999988764 899999997 45777777665543 3799999998875
No 34
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=39.15 E-value=61 Score=18.43 Aligned_cols=20 Identities=15% Similarity=0.002 Sum_probs=14.1
Q ss_pred cEEEEEeeCCeEEEEeecCc
Q 039536 114 PFGAVVVRSDEVVVSCHNMV 133 (150)
Q Consensus 114 PVGAVIV~dGeIIa~G~N~~ 133 (150)
-..++|..||++.+.|.|..
T Consensus 9 ~ht~al~~~g~v~~wG~n~~ 28 (30)
T PF13540_consen 9 YHTCALTSDGEVYCWGDNNY 28 (30)
T ss_dssp SEEEEEE-TTEEEEEE--TT
T ss_pred CEEEEEEcCCCEEEEcCCcC
Confidence 45788888999999999864
No 35
>KOG1783 consensus Small nuclear ribonucleoprotein F [RNA processing and modification]
Probab=34.24 E-value=1.3e+02 Score=21.80 Aligned_cols=68 Identities=16% Similarity=0.170 Sum_probs=44.2
Q ss_pred ChheehhhhcCCccccccceeecCCCccccccchhcccccCchhHHHHHHHHHHHHHhcccCCCCCcEEEEEeeCCeEEE
Q 039536 48 TSTTFIHFINNNNNMEEANVVETKDGTISVASAFAAHQEAVQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVV 127 (150)
Q Consensus 48 ~~~~~~~~i~~~~~~~e~~v~~~k~g~~~v~~a~~~~~e~~~~~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~dGeIIa 127 (150)
+|+.|.+.|-++++ ++...+|..-.. .-.--..||..|++.+++-..-....-+|-+.++.+.|+-
T Consensus 6 ~~~~fl~~iiGr~V-----~VKl~sgvdyrG---------~l~~lDgymNiaLe~tee~~ngql~n~ygdaFirGnnVly 71 (77)
T KOG1783|consen 6 MPGEFLKAIIGRTV-----VVKLNSGVDYRG---------TLVCLDGYMNIALESTEEYVNGQLKNKYGDAFIRGNNVLY 71 (77)
T ss_pred CcHHHHHHHhCCeE-----EEEecCCccccc---------eehhhhhHHHHHHHHHHHHhcCcccccccceeeccccEEE
Confidence 57777777777777 566555532111 1223467999999999987743222458888888777764
Q ss_pred Ee
Q 039536 128 SC 129 (150)
Q Consensus 128 ~G 129 (150)
.+
T Consensus 72 Is 73 (77)
T KOG1783|consen 72 IS 73 (77)
T ss_pred EE
Confidence 43
No 36
>TIGR00159 conserved hypothetical protein TIGR00159. These proteins have no detectable global or local homology to any protein of known function. Members are restricted to the bacteria and found broadly in lineages other than the Proteobacteria.
Probab=31.18 E-value=44 Score=28.04 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=20.0
Q ss_pred EEEEEeeCCeEEEEeecCcccC-----CCCCchH
Q 039536 115 FGAVVVRSDEVVVSCHNMVLKH-----TDPTAHA 143 (150)
Q Consensus 115 VGAVIV~dGeIIa~G~N~~~~~-----~DpTaHA 143 (150)
=||||+++|+|++.|---.... .=+|+|.
T Consensus 126 DGAvII~~~rI~aA~~~Lpls~~~~~~~lGtRHR 159 (211)
T TIGR00159 126 DGAVIIRDNKIVAAGSYLPLSEQSISKSLGTRHR 159 (211)
T ss_pred CcEEEEECCEEEEEEEEecCCCCCCCCccChHHH
Confidence 4999999999999886433222 2256664
No 37
>PF13382 Adenine_deam_C: Adenine deaminase C-terminal domain; PDB: 3T8L_B 3T81_A 3NQB_A.
Probab=25.72 E-value=1.4e+02 Score=24.00 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhcccCCCCCcEEEEEeeCCeEEEEee
Q 039536 92 DHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCH 130 (150)
Q Consensus 92 D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~dGeIIa~G~ 130 (150)
+.+-|.+|+..-.+ .|. |.|+|++|+++++=.
T Consensus 74 ~~~dm~~A~n~l~~---~gG----G~vvv~~g~v~a~lp 105 (171)
T PF13382_consen 74 NDEDMALAANRLIE---MGG----GIVVVDDGEVLAELP 105 (171)
T ss_dssp SHHHHHHHHHHHHH---TTS----EEEEEETTEEEEEEE
T ss_pred CHHHHHHHHHHHHH---hCC----CEEEEECCEEEEEEe
Confidence 34557777776655 344 899999999998744
No 38
>PF13953 PapC_C: PapC C-terminal domain; PDB: 3L48_E 2XET_A 3RFZ_E 2KT6_A.
Probab=24.11 E-value=28 Score=23.25 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=10.3
Q ss_pred CCCCCcEEEEEee-CCeEEE
Q 039536 109 CGDGGPFGAVVVR-SDEVVV 127 (150)
Q Consensus 109 ~Ge~~PVGAVIV~-dGeIIa 127 (150)
.|...||||.+.+ +|+.++
T Consensus 7 ~G~~lPfGA~v~~~~g~~~g 26 (68)
T PF13953_consen 7 DGKPLPFGASVSDEDGNNIG 26 (68)
T ss_dssp TSEE--TT-EEEETTSSEEE
T ss_pred CCCcCCCCcEEEcCCCCEEE
Confidence 3544899999998 565443
No 39
>PF02457 DisA_N: DisA bacterial checkpoint controller nucleotide-binding; InterPro: IPR003390 The DisA protein is a bacterial checkpoint protein that dimerises into an octameric complex. The protein consists of three distinct domains. This domain is the first and is a globular, nucleotide-binding region; the next 146-289 residues constitute the DisA-linker family, IPR018906 from INTERPRO that consists of an elongated bundle of three alpha helices (alpha-6, alpha-10, and alpha-11), one side of which carries an additional three helices (alpha7-9), which thus forms a spine like-linker between domains 1 and 3. The C-terminal residues, of domain 3, are represented by family HHH, IPR000445 from INTERPRO the specific DNA-binding domain. The octameric complex thus has structurally linked nucleotide-binding and DNA-binding HhH domains and the nucleotide-binding domains are bound to a cyclic di-adenosine phosphate such that DisA is a specific di-adenylate cyclase. The di-adenylate cyclase activity is strongly suppressed by binding to branched DNA, but not to duplex or single-stranded DNA, suggesting a role for DisA as a monitor of the presence of stalled replication forks or recombination intermediates via DNA structure-modulated c-di-AMP synthesis.; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 2FB5_A.
Probab=23.43 E-value=51 Score=24.96 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=16.2
Q ss_pred EEEEeeCCeEEEEeecCcc
Q 039536 116 GAVVVRSDEVVVSCHNMVL 134 (150)
Q Consensus 116 GAVIV~dGeIIa~G~N~~~ 134 (150)
||||+++|+|++.|.+-..
T Consensus 57 GAviI~~~~i~aag~~l~l 75 (122)
T PF02457_consen 57 GAVIIDGGRIVAAGAILPL 75 (122)
T ss_dssp SEEEEETTCCEEEEEEEEE
T ss_pred ceEEEECCeEEEEEEEeec
Confidence 9999999999999887443
No 40
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=22.55 E-value=14 Score=30.03 Aligned_cols=25 Identities=36% Similarity=0.503 Sum_probs=21.4
Q ss_pred eeccccEEEEechhHHHHhhhhhhh
Q 039536 5 VRKHVNMVIIKIPSVLWALGMSLAQ 29 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (150)
.|||.|+|++.+-..|-+++|.++|
T Consensus 11 YRk~~n~v~~~~v~~lai~sl~~s~ 35 (165)
T PF11286_consen 11 YRKHLNRVIVACVASLAILSLAFSQ 35 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999988888888887765
No 41
>COG1624 Uncharacterized conserved protein [Function unknown]
Probab=21.74 E-value=1.1e+02 Score=26.20 Aligned_cols=28 Identities=29% Similarity=0.523 Sum_probs=19.4
Q ss_pred EEEEeeCCeEEEEeecCcccCCC------CCchH
Q 039536 116 GAVVVRSDEVVVSCHNMVLKHTD------PTAHA 143 (150)
Q Consensus 116 GAVIV~dGeIIa~G~N~~~~~~D------pTaHA 143 (150)
||+|+++++|++.|.=-..+.++ +|+|-
T Consensus 174 GAvII~~~kIvaAg~yLpls~~~~i~k~lGtRHr 207 (247)
T COG1624 174 GAVIIRDNKIVAAGRYLPLSEKSLISKGLGTRHR 207 (247)
T ss_pred ceEEEeCCEEEEEEEEeccCCCCCcCccccHHHH
Confidence 99999988999887543333322 66774
Done!