Query 039536
Match_columns 150
No_of_seqs 126 out of 1175
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 18:25:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039536.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039536hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dh1_A TRNA-specific adenosine 99.7 4.9E-17 1.7E-21 129.7 5.3 62 88-150 22-83 (189)
2 1wkq_A Guanine deaminase; doma 99.7 6.7E-17 2.3E-21 126.3 5.2 61 90-150 9-69 (164)
3 2nx8_A TRNA-specific adenosine 99.6 1.6E-16 5.3E-21 125.6 5.0 61 89-150 13-73 (179)
4 2a8n_A Cytidine and deoxycytid 99.6 1.9E-16 6.6E-21 120.0 4.7 59 91-150 3-61 (144)
5 1z3a_A TRNA-specific adenosine 99.6 2.6E-16 8.8E-21 122.9 5.2 60 90-150 7-66 (168)
6 2b3j_A TRNA adenosine deaminas 99.6 5.3E-16 1.8E-20 119.7 5.3 60 90-150 5-64 (159)
7 2g84_A Cytidine and deoxycytid 99.6 1E-15 3.5E-20 122.2 6.5 61 89-150 25-87 (197)
8 1p6o_A Cytosine deaminase; hyd 99.6 8.8E-16 3E-20 119.1 4.5 61 89-150 11-73 (161)
9 1wwr_A TRNA adenosine deaminas 99.6 1.1E-15 3.7E-20 120.1 4.8 59 91-150 22-80 (171)
10 2w4l_A DCMP deaminse, deoxycyt 99.5 6.9E-14 2.4E-18 110.3 7.1 65 84-150 5-89 (178)
11 2hvw_A Deoxycytidylate deamina 99.5 4.7E-14 1.6E-18 112.1 6.0 60 89-150 39-113 (184)
12 1vq2_A DCMP deaminase, deoxycy 99.4 2E-13 6.8E-18 107.7 5.1 44 91-136 2-45 (193)
13 2g6v_A Riboflavin biosynthesis 99.4 3.8E-13 1.3E-17 116.7 6.2 58 89-150 27-85 (402)
14 2b3z_A Riboflavin biosynthesis 99.4 5.9E-13 2E-17 114.2 6.4 56 91-150 13-69 (373)
15 2hxv_A Diaminohydroxyphosphori 99.3 9.7E-13 3.3E-17 112.4 6.8 54 93-150 15-69 (360)
16 1uwz_A Cytidine deaminase; CDD 98.8 6.1E-09 2.1E-13 78.8 6.3 56 92-149 3-60 (136)
17 2fr5_A Cytidine deaminase; tet 98.6 4.6E-08 1.6E-12 75.2 6.7 59 90-149 13-72 (146)
18 2z3g_A Blasticidin-S deaminase 98.6 1.7E-07 5.9E-12 70.3 7.9 57 89-149 4-61 (130)
19 3g8q_A Predicted RNA-binding p 98.4 6.4E-08 2.2E-12 81.4 1.9 41 101-149 11-51 (278)
20 3b8f_A Putative blasticidin S 98.1 3.2E-06 1.1E-10 64.2 5.8 56 91-149 3-59 (142)
21 1r5t_A Cytidine deaminase; zin 98.0 1.7E-05 5.7E-10 60.3 6.8 60 89-149 8-68 (142)
22 3r2n_A Cytidine deaminase; str 97.8 2.7E-05 9.3E-10 59.4 6.1 59 90-149 8-67 (138)
23 2d30_A Cytidine deaminase; pur 97.7 6.9E-05 2.4E-09 57.2 6.5 59 90-149 10-69 (141)
24 3mpz_A Cytidine deaminase; ssg 97.3 0.0004 1.4E-08 53.8 6.3 58 91-149 24-82 (150)
25 1ctt_A Cytidine deaminase; hyd 97.2 0.00053 1.8E-08 57.9 6.3 57 92-149 188-245 (294)
26 3oj6_A Blasticidin-S deaminase 96.5 0.013 4.3E-07 45.6 8.2 58 88-149 27-85 (158)
27 3dmo_A Cytidine deaminase; str 96.4 0.007 2.4E-07 46.1 6.5 58 91-149 10-68 (138)
28 2nyt_A Probable C->U-editing e 96.3 0.0039 1.3E-07 49.5 4.7 39 109-150 29-72 (190)
29 1ctt_A Cytidine deaminase; hyd 96.1 0.011 3.7E-07 49.9 6.5 57 92-149 49-109 (294)
30 4eg2_A Cytidine deaminase; UMP 94.2 0.12 4.3E-06 43.7 7.3 56 93-149 193-249 (298)
31 4eg2_A Cytidine deaminase; UMP 88.7 1.1 3.8E-05 37.9 6.9 57 92-149 52-112 (298)
32 3mtw_A L-arginine carboxypepti 30.5 41 0.0014 24.7 3.2 18 116-133 23-40 (403)
33 2fb5_A Hypothetical membrane s 29.6 26 0.0009 28.2 2.2 17 116-132 136-152 (205)
34 3hpa_A Amidohydrolase; signatu 20.6 75 0.0026 24.9 3.3 18 116-133 52-69 (479)
35 2xde_A GAG polyprotein, HIV-1 20.0 19 0.00064 27.7 -0.4 44 44-96 13-56 (145)
36 2wlv_A GAG polyprotein, HIV-2 20.0 16 0.00055 28.0 -0.8 43 45-96 12-54 (144)
No 1
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=99.66 E-value=4.9e-17 Score=129.69 Aligned_cols=62 Identities=26% Similarity=0.399 Sum_probs=56.9
Q ss_pred CchhHHHHHHHHHHHHHhcccCCCCCcEEEEEeeCCeEEEEeecCcccCCCCCchHHHHHhhC
Q 039536 88 VQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150 (150)
Q Consensus 88 ~~~~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAEm~AIr~ 150 (150)
...+|++||++|+++|+++...|+ +|||||||+||+||++|+|++...+||+.|||++||++
T Consensus 22 ~~~~d~~~M~~Al~lA~~a~~~~~-~pVGAVIV~~g~IIa~G~N~~~~~~~~t~HAEi~AI~~ 83 (189)
T 3dh1_A 22 SMEETEKWMEEAMHMAKEALENTE-VPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQ 83 (189)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTS-CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhhhCCC-CCEEEEEEECCEEEEEEeCCCCccCCCcCcHHHHHHHH
Confidence 346689999999999999998885 99999999999999999999888889999999999973
No 2
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=99.65 E-value=6.7e-17 Score=126.26 Aligned_cols=61 Identities=48% Similarity=0.756 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCCcEEEEEeeCCeEEEEeecCcccCCCCCchHHHHHhhC
Q 039536 90 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150 (150)
Q Consensus 90 ~~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAEm~AIr~ 150 (150)
..|++||++|+++|+++...|++.|||||||+||+||++|+|+....+||+.|||++||++
T Consensus 9 ~~~~~~M~~Al~~A~~a~~~g~~~pVGAVIV~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~ 69 (164)
T 1wkq_A 9 MNHETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRK 69 (164)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSSSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCEEEEEEecCCcCCCCcccCHHHHHHHH
Confidence 3588999999999999999885599999999999999999999988899999999999973
No 3
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=99.63 E-value=1.6e-16 Score=125.58 Aligned_cols=61 Identities=26% Similarity=0.451 Sum_probs=56.4
Q ss_pred chhHHHHHHHHHHHHHhcccCCCCCcEEEEEeeCCeEEEEeecCcccCCCCCchHHHHHhhC
Q 039536 89 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150 (150)
Q Consensus 89 ~~~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAEm~AIr~ 150 (150)
.+.|++||++|+++|+++...|+ +|||||||+||+||++|+|.....+||+.|||++||++
T Consensus 13 ~~~d~~~M~~Al~~A~~a~~~g~-~pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~ 73 (179)
T 2nx8_A 13 LEEQTYFMQEALKESEKSLQKAE-IPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINE 73 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccccCC-CCEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHH
Confidence 35789999999999999998874 99999999999999999999988899999999999973
No 4
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=99.62 E-value=1.9e-16 Score=119.95 Aligned_cols=59 Identities=32% Similarity=0.408 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHhcccCCCCCcEEEEEeeCCeEEEEeecCcccCCCCCchHHHHHhhC
Q 039536 91 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150 (150)
Q Consensus 91 ~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAEm~AIr~ 150 (150)
+|++||++|+++|+++...|+ .|||||||+||+||++|+|......||+.|||++||++
T Consensus 3 ~d~~~m~~A~~~A~~a~~~~~-~~VGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~ 61 (144)
T 2a8n_A 3 ERTHFMELALVEARSAGERDE-VPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRM 61 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHTTS-CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcCCC-CCEEEEEEECCEEEEEEECCCCCCCCCcCCHHHHHHHH
Confidence 588999999999999998764 99999999999999999999988899999999999973
No 5
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=99.62 E-value=2.6e-16 Score=122.94 Aligned_cols=60 Identities=30% Similarity=0.418 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCCcEEEEEeeCCeEEEEeecCcccCCCCCchHHHHHhhC
Q 039536 90 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150 (150)
Q Consensus 90 ~~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAEm~AIr~ 150 (150)
..|++||++|+++|+++...|+ .|||||||+||+||++|+|.....+|||.|||++||++
T Consensus 7 ~~d~~~M~~A~~~A~~a~~~~~-~pVGAviV~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~ 66 (168)
T 1z3a_A 7 FSHEYWMRHALTLAKRAWDERE-VPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 66 (168)
T ss_dssp TSHHHHHHHHHHHHHHHHHTTS-CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhcCC-CcEEEEEEECCEEEEEEEcccccCCCcchhHHHHHHHH
Confidence 4588999999999999998765 99999999999999999999988899999999999973
No 6
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=99.60 E-value=5.3e-16 Score=119.75 Aligned_cols=60 Identities=38% Similarity=0.609 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCCcEEEEEeeCCeEEEEeecCcccCCCCCchHHHHHhhC
Q 039536 90 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150 (150)
Q Consensus 90 ~~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAEm~AIr~ 150 (150)
+.|++||++|+++|+++...++ .|||||||+||+||++|+|......||+.|||++||++
T Consensus 5 ~~d~~~m~~A~~~A~~a~~~~~-~pVGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~ 64 (159)
T 2b3j_A 5 TNDIYFMTLAIEEAKKAAQLGE-VPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIER 64 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhcCCC-CCEEEEEEECCEEEEEEECCCCCCCCCccCHHHHHHHH
Confidence 3688999999999999998864 99999999999999999999988889999999999973
No 7
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=99.59 E-value=1e-15 Score=122.22 Aligned_cols=61 Identities=21% Similarity=0.274 Sum_probs=55.1
Q ss_pred chhHHHHHHHHHHHHHhcccCCCCCcEEEEEee-C-CeEEEEeecCcccCCCCCchHHHHHhhC
Q 039536 89 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-S-DEVVVSCHNMVLKHTDPTAHAEVTAVRE 150 (150)
Q Consensus 89 ~~~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~-d-GeIIa~G~N~~~~~~DpTaHAEm~AIr~ 150 (150)
...|++||++|+++|+++...++ .|||||||+ | |+||++|+|++...+||+.|||++||++
T Consensus 25 ~~~d~~~M~~Al~~A~~a~~~~~-~PvGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~ 87 (197)
T 2g84_A 25 LAAPEARMGYVLELVRANIAADG-GPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSL 87 (197)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTTC-CSCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhhcCC-CCEEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHH
Confidence 44689999999999999995555 899999998 8 9999999999988899999999999973
No 8
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=99.58 E-value=8.8e-16 Score=119.06 Aligned_cols=61 Identities=28% Similarity=0.448 Sum_probs=55.5
Q ss_pred chhHHHHHHHHHHHHHhcccCCCCCcEEEEEe--eCCeEEEEeecCcccCCCCCchHHHHHhhC
Q 039536 89 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVV--RSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150 (150)
Q Consensus 89 ~~~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV--~dGeIIa~G~N~~~~~~DpTaHAEm~AIr~ 150 (150)
.+.|++||++|+++|+++...+ +.||||||| +||+||++|+|.....+|||.|||++||++
T Consensus 11 ~~~d~~~M~~A~~~A~~a~~~~-~~pVGAviVd~~~g~Ii~~G~N~~~~~~~~t~HAE~~Ai~~ 73 (161)
T 1p6o_A 11 SKWDQKGMDIAYEEAALGYKEG-GVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLEN 73 (161)
T ss_dssp CTTHHHHHHHHHHHHHHHHHTT-SCCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhccC-CCCEEEEEEEecCCEEEEEEECCCCCCCCcccCHHHHHHHH
Confidence 3568899999999999999887 499999999 699999999999988889999999999973
No 9
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=99.57 E-value=1.1e-15 Score=120.11 Aligned_cols=59 Identities=41% Similarity=0.623 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHhcccCCCCCcEEEEEeeCCeEEEEeecCcccCCCCCchHHHHHhhC
Q 039536 91 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150 (150)
Q Consensus 91 ~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAEm~AIr~ 150 (150)
+|++||++|+++|+++...| +.|||||||+||+||++|+|......||+.|||++||++
T Consensus 22 ~~~~~M~~A~~~A~~a~~~~-~~pVGAvIV~dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~ 80 (171)
T 1wwr_A 22 GKEYFLKVALREAKRAFEKG-EVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKE 80 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHTT-SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccCC-CCCEEEEEEECCEEEEEEECCCCccCCcccCHHHHHHHH
Confidence 47899999999999999876 499999999999999999999988899999999999973
No 10
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=99.47 E-value=6.9e-14 Score=110.29 Aligned_cols=65 Identities=18% Similarity=0.245 Sum_probs=53.9
Q ss_pred ccccCchhHHHHHHHHHHHHHhcccCCCCCcEEEEEe-eCCeEEEEeecCcccC------------CCC-------CchH
Q 039536 84 HQEAVQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVV-RSDEVVVSCHNMVLKH------------TDP-------TAHA 143 (150)
Q Consensus 84 ~~e~~~~~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV-~dGeIIa~G~N~~~~~------------~Dp-------TaHA 143 (150)
++....++|++||++|+++|+++... +.||||||| +||+||++|+|....+ +|| +.||
T Consensus 5 ~~~~~~~~d~~~M~~A~~~A~~s~~p--~~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~~~t~HA 82 (178)
T 2w4l_A 5 KRDDYLEWPEYFMAVAFLSAQRSKDP--NSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHA 82 (178)
T ss_dssp CCSSCCCHHHHHHHHHHHHHTTCCCS--SCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCH
T ss_pred ccccccHHHHHHHHHHHHHHHhcCCC--CCCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCccccccCCcCCH
Confidence 34445667999999999999999854 599999999 5999999999987533 454 8999
Q ss_pred HHHHhhC
Q 039536 144 EVTAVRE 150 (150)
Q Consensus 144 Em~AIr~ 150 (150)
|++||++
T Consensus 83 E~~AI~~ 89 (178)
T 2w4l_A 83 ELNAIMN 89 (178)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9999974
No 11
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=99.47 E-value=4.7e-14 Score=112.15 Aligned_cols=60 Identities=22% Similarity=0.303 Sum_probs=52.0
Q ss_pred chhHHHHHHHHHHHHHhcccCCCCCcEEEEEeeCCeEEEEeecCcccC---------------CCCCchHHHHHhhC
Q 039536 89 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKH---------------TDPTAHAEVTAVRE 150 (150)
Q Consensus 89 ~~~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~dGeIIa~G~N~~~~~---------------~DpTaHAEm~AIr~ 150 (150)
.++|++||++|+++|+++. .+ +.|||||||+||+||++|+|..... .|++.|||++||++
T Consensus 39 ~~~de~~M~~A~~~A~~s~-~~-~~~VGAVIV~dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~t~HAE~~AI~~ 113 (184)
T 2hvw_A 39 LSWQDYFMANAELISKRST-CN-RAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQ 113 (184)
T ss_dssp CCHHHHHHHHHHHHGGGCC-CT-TCCCEEEEEETTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcC-CC-CCCEEEEEEECCEEEEEEECCCcccccccccccccccccccCCccCHHHHHHHH
Confidence 4578999999999999997 34 5999999999999999999987543 27899999999973
No 12
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=99.39 E-value=2e-13 Score=107.74 Aligned_cols=44 Identities=14% Similarity=0.052 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHhcccCCCCCcEEEEEeeCCeEEEEeecCcccC
Q 039536 91 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKH 136 (150)
Q Consensus 91 ~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~dGeIIa~G~N~~~~~ 136 (150)
+|++||++|+++|+++.. + +.|||||||+||+||+.|+|.+..+
T Consensus 2 ~d~~fM~~A~~~A~rs~~-~-~~~VGAVIV~dg~Iia~G~N~~~~g 45 (193)
T 1vq2_A 2 KASTVLQIAYLVSQESKC-C-SWKVGAVIEKNGRIISTGYNGSPAG 45 (193)
T ss_dssp CHHHHHHHHHHHHTTCCC-S-SBCCEEEEEETTEEEEEEECBCCTT
T ss_pred CHHHHHHHHHHHHHhcCC-C-CCCEEEEEEECCEEEEEEeCCCCCC
Confidence 378999999999999975 3 4999999999999999999998753
No 13
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=99.38 E-value=3.8e-13 Score=116.67 Aligned_cols=58 Identities=28% Similarity=0.358 Sum_probs=50.9
Q ss_pred chhHHHHHHHHHHHHHhcccC-CCCCcEEEEEeeCCeEEEEeecCcccCCCCCchHHHHHhhC
Q 039536 89 QDRDHEFLSKAVEEAYKGVEC-GDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150 (150)
Q Consensus 89 ~~~D~~~Mr~AIelA~kA~~~-Ge~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAEm~AIr~ 150 (150)
.+.|++||++|+++|+++... .+++|||||||+||+||++|+|+. +++.|||++||++
T Consensus 27 ~~~d~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~----~g~~HAE~~Ai~~ 85 (402)
T 2g6v_A 27 QGQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQR----AGEPHAEVHALRM 85 (402)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTCTTSCCCEEEEEETTEEEEEEECCC----TTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCccCCCCCCEEEEEEECCEEEEEEeCCC----CCccHHHHHHHHH
Confidence 457899999999999999854 245899999999999999999986 5799999999973
No 14
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=99.36 E-value=5.9e-13 Score=114.20 Aligned_cols=56 Identities=27% Similarity=0.305 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHhcccC-CCCCcEEEEEeeCCeEEEEeecCcccCCCCCchHHHHHhhC
Q 039536 91 RDHEFLSKAVEEAYKGVEC-GDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150 (150)
Q Consensus 91 ~D~~~Mr~AIelA~kA~~~-Ge~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAEm~AIr~ 150 (150)
.|++||++|+++|+++... .+++|||||||+||+||++|+|+. +++.|||++||++
T Consensus 13 ~~~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~----~~~~HAE~~Ai~~ 69 (373)
T 2b3z_A 13 MEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLK----YGEAHAEVHAIHM 69 (373)
T ss_dssp CHHHHHHHHHHHHGGGTTSSTTSCCCEEEEESSSSEEEEEECCS----TTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhCcccCCCCcEEEEEEECCEEEEEEeCCC----CCCcCHHHHHHHH
Confidence 4789999999999999863 245999999999999999999987 5799999999973
No 15
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=99.35 E-value=9.7e-13 Score=112.40 Aligned_cols=54 Identities=30% Similarity=0.397 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhcccCC-CCCcEEEEEeeCCeEEEEeecCcccCCCCCchHHHHHhhC
Q 039536 93 HEFLSKAVEEAYKGVECG-DGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 150 (150)
Q Consensus 93 ~~~Mr~AIelA~kA~~~G-e~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAEm~AIr~ 150 (150)
.+||++|+++|+++...+ +++|||||||+||+||++|+|+. +++.|||++||++
T Consensus 15 ~~~m~~al~lA~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~----~~~~HAE~~Ai~~ 69 (360)
T 2hxv_A 15 ETFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPY----FGGPHAERMAIES 69 (360)
T ss_dssp HHHHHHHHHHHHTTTTTSTTSCCCEEEEEETTEEEEEEECCS----TTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCCCEEEEEEECCEEEEEEeCCC----CCCcCHHHHHHHH
Confidence 568999999999998652 46999999999999999999987 5799999999973
No 16
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=98.81 E-value=6.1e-09 Score=78.83 Aligned_cols=56 Identities=18% Similarity=0.130 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhcccC-CCCCcEEEEEee-CCeEEEEeecCcccCCCCCchHHHHHhh
Q 039536 92 DHEFLSKAVEEAYKGVEC-GDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 149 (150)
Q Consensus 92 D~~~Mr~AIelA~kA~~~-Ge~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAEm~AIr 149 (150)
++++|++|++.++++... ++ .||||+|+. ||+|+ .|.|......+++.|||..||+
T Consensus 3 ~~~l~~~A~~aa~~ayapYs~-~~VGAal~~~dG~i~-~G~Nvena~~~~t~cAE~~Ai~ 60 (136)
T 1uwz_A 3 RQELITEALKARDMAYAPYSK-FQVGAALLTKDGKVY-RGCNIENAAYSMCNCAEATALF 60 (136)
T ss_dssp HHHHHHHHHHHHTTCBCTTTC-CCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCccCC-CCEEEEEEeCCCeEE-EEeCcccCCCCCccCHHHHHHH
Confidence 678999999999999986 54 899999996 89999 7999988888999999999986
No 17
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=98.65 E-value=4.6e-08 Score=75.21 Aligned_cols=59 Identities=19% Similarity=0.111 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCCcEEEEEee-CCeEEEEeecCcccCCCCCchHHHHHhh
Q 039536 90 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 149 (150)
Q Consensus 90 ~~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAEm~AIr 149 (150)
.+++++|++|++.+++++....+.||||+|+. ||+|+ .|.|......+++.|||..||.
T Consensus 13 ~~~~~L~~~A~~a~~~ayapys~f~VGAal~~~dG~i~-~G~NvEnas~~~t~cAE~~Ai~ 72 (146)
T 2fr5_A 13 EHVQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIF-SGCNIENACYPLGVCAERTAIQ 72 (146)
T ss_dssp HHHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCcEE-EEEeccccCCCCCcCHHHHHHH
Confidence 45678999999999999875335899999994 99988 7999888888899999999986
No 18
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=98.58 E-value=1.7e-07 Score=70.35 Aligned_cols=57 Identities=9% Similarity=0.101 Sum_probs=49.3
Q ss_pred chhHHHHHHHHHHHHHhcccCCCCCcEEEEEee-CCeEEEEeecCcccCCCCCchHHHHHhh
Q 039536 89 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 149 (150)
Q Consensus 89 ~~~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAEm~AIr 149 (150)
.+.|+++|++|++.++++...+ +.||||+|+. ||+|+ .|.|.. ..+++.|||..||.
T Consensus 4 ~~~~~~L~~~A~~a~~~ay~~s-~f~VGAal~~~dG~i~-~G~NvE--~~~~t~cAE~~Ai~ 61 (130)
T 2z3g_A 4 SQEESTLIERATATINSIPISE-DYSVASAALSSDGRIF-TGVNVY--HFTGGPCAELVVLG 61 (130)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCS-SSCEEEEEEETTSCEE-EEECCC--CTTTCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCCC-CCCEEEEEEecCCeEE-EEeccc--cCCcccCHHHHHHH
Confidence 4567889999999999998764 4899999995 89988 699977 57899999999985
No 19
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}
Probab=98.41 E-value=6.4e-08 Score=81.43 Aligned_cols=41 Identities=22% Similarity=0.148 Sum_probs=32.4
Q ss_pred HHHHhcccCCCCCcEEEEEeeCCeEEEEeecCcccCCCCCchHHHHHhh
Q 039536 101 EEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVR 149 (150)
Q Consensus 101 elA~kA~~~Ge~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAEm~AIr 149 (150)
++++.+-.. +|+|||||||+||+||++|. .++.|||++||+
T Consensus 11 d~~k~~~t~-PNPpVGAVIVkDGeIIA~Ge-------~gTaHAEInAIr 51 (278)
T 3g8q_A 11 DVKKILNEI-PKRTVTAALLEGGEIVAVEE-------ADDEHAERKLVR 51 (278)
T ss_dssp EHHHHHHHS-CCSSCEEEEEETTEEEEEEE-------CSSSCHHHHHHH
T ss_pred hHhHHhccC-CCCCEEEEEEECCEEEEecC-------CCCCCHHHHHhC
Confidence 344444444 46999999999999999992 189999999996
No 20
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=98.14 E-value=3.2e-06 Score=64.23 Aligned_cols=56 Identities=5% Similarity=-0.079 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHhcccCCCCCcEEEEEee-CCeEEEEeecCcccCCCCCchHHHHHhh
Q 039536 91 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 149 (150)
Q Consensus 91 ~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAEm~AIr 149 (150)
.|+++|+.|++.++++..... ||||+|+. ||+|+ .|.|......+++.|||..||.
T Consensus 3 ~~~~L~~~A~~a~~~ayaPyS--~VGAAl~~~dG~i~-~G~NvEnas~~~~lcAEr~Ai~ 59 (142)
T 3b8f_A 3 IEQQLYDVVKQLIEQRYPNDW--GGAAAIRVEDGTIY-TSVAPDVINASTELCMETGAIL 59 (142)
T ss_dssp HHHHHHHHHHHHHHHHCSSSC--EEEEEEEETTSCEE-EECCCCCSSGGGCCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCC--CEEEEEEeCCCcEE-EEECcccccCCcccCHHHHHHH
Confidence 467899999999999987653 99999985 89988 8999888888899999999985
No 21
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=97.97 E-value=1.7e-05 Score=60.32 Aligned_cols=60 Identities=12% Similarity=0.019 Sum_probs=49.7
Q ss_pred chhHHHHHHHHHHHHHhcccCCCCCcEEEEEee-CCeEEEEeecCcccCCCCCchHHHHHhh
Q 039536 89 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 149 (150)
Q Consensus 89 ~~~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAEm~AIr 149 (150)
..++++++++|++.+++++..-.+.||||+|.. ||+|+ .|.|-.....+++.|||..||.
T Consensus 8 ~~~~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~-~G~NvEnasy~~t~cAEr~Ai~ 68 (142)
T 1r5t_A 8 DRQLEALKRAALKACELSYSPYSHFRVGCSILTNNDVIF-TGANVENASYSNCICAERSAMI 68 (142)
T ss_dssp HHHHHHHHHHHHHHGGGCBCTTTCCCEEEEEECTTSCEE-EEECBCCSSGGGCBCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCCEE-EEEeecccCCCCCcCHHHHHHH
Confidence 345678999999999998874224899999996 89987 6999877777899999999985
No 22
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=97.84 E-value=2.7e-05 Score=59.38 Aligned_cols=59 Identities=12% Similarity=0.006 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCCcEEEEEee-CCeEEEEeecCcccCCCCCchHHHHHhh
Q 039536 90 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 149 (150)
Q Consensus 90 ~~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAEm~AIr 149 (150)
.++++.+++|++.+++++..-.+.||||+|.. ||+|+ .|.|-.....+++.|||..||.
T Consensus 8 ~~~~~L~~~A~~a~~~ayaPyS~f~VGAAll~~dG~i~-~G~NvEnasy~~t~CAEr~Ai~ 67 (138)
T 3r2n_A 8 VNWDTLQKAAVAARANSYAPYSNFPVGVAGFVNDGRLI-TGVNVENASYGLALCAECSMIS 67 (138)
T ss_dssp CCHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhccCCCCCCcEEEEEEeCCCcEE-EEEcccccCCCCCcCHHHHHHH
Confidence 34677899999999998864334899999996 89987 9999887777889999999985
No 23
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=97.71 E-value=6.9e-05 Score=57.19 Aligned_cols=59 Identities=17% Similarity=0.076 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCCcEEEEEee-CCeEEEEeecCcccCCCCCchHHHHHhh
Q 039536 90 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 149 (150)
Q Consensus 90 ~~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAEm~AIr 149 (150)
.++.+.+++|++.+++++..=.+.||||++.. ||+|+ .|.|-.....+.+.|||..||.
T Consensus 10 ~~~~~L~~~A~~a~~~AyaPYS~f~VGAAll~~dG~i~-~G~NvEnasy~~t~CAEr~Ai~ 69 (141)
T 2d30_A 10 MNSKQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALF 69 (141)
T ss_dssp CCHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTCCEE-EEECBCCSSGGGCBCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCCcCCCcEEEEEEeCCCCEE-EeeccccCCCCcccCHHHHHHH
Confidence 35778899999999998865224899999996 89877 8999776677789999999984
No 24
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=97.33 E-value=0.0004 Score=53.82 Aligned_cols=58 Identities=22% Similarity=0.122 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHhcccCCCCCcEEEEEee-CCeEEEEeecCcccCCCCCchHHHHHhh
Q 039536 91 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 149 (150)
Q Consensus 91 ~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAEm~AIr 149 (150)
+.++.+++|++..++++..-.+.+|||+|.. ||+|+ .|.|-.......+.|||..||-
T Consensus 24 ~~~~L~~~A~~a~~~AYaPYS~F~VGAAll~~dG~i~-tG~NvEnasy~~t~CAEr~Ai~ 82 (150)
T 3mpz_A 24 NWNALRSKAIEVSRHAYAPYSGFPVGAAALVDDGRTV-TGCNVENVSYGLGLCAECAVVC 82 (150)
T ss_dssp CHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCEEEEEEeCCCCEE-EEEecccccCCccccHHHHHHH
Confidence 4577899999999998854334899999986 89988 9999887777789999999984
No 25
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=97.21 E-value=0.00053 Score=57.91 Aligned_cols=57 Identities=14% Similarity=0.051 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhcccCCCCCcEEEEEee-CCeEEEEeecCcccCCCCCchHHHHHhh
Q 039536 92 DHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 149 (150)
Q Consensus 92 D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAEm~AIr 149 (150)
++++++.|++.+++++....+.||||+|.. ||+|+ .|.|-.....+++.|||..||.
T Consensus 188 ~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~-tG~NvEnasy~~tlCAEr~Ai~ 245 (294)
T 1ctt_A 188 GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIF-SGSYAENAAFNPTLPPLQGALI 245 (294)
T ss_dssp SSHHHHHHHHHHHTCBCTTTCCCEEEEEEETTSCEE-EEECBCCTTSTTCBCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCcCCCceEEEEEeCCCCEE-EEEeeecCCCCCccCHHHHHHH
Confidence 467899999999999876545899999996 88755 8999888888999999999984
No 26
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=96.46 E-value=0.013 Score=45.64 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=44.0
Q ss_pred CchhHHHHHHHHHHHHHhcccCCCCCcEEEEEee-CCeEEEEeecCcccCCCCCchHHHHHhh
Q 039536 88 VQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 149 (150)
Q Consensus 88 ~~~~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAEm~AIr 149 (150)
..++|.+.+++|.+..+++...+ +.+|||++.. ||+|+ .|.|-. +...+.+||..||-
T Consensus 27 L~~ed~~Li~~A~~a~~~~PyS~-~f~VGAAll~~dG~i~-tG~NVE--n~~~~lCAEr~Ai~ 85 (158)
T 3oj6_A 27 LSAAGQNLIDTATSVINGIPVSD-FYSVASAAISDDGRVF-SGVNVY--HFNGGPCAELVVLG 85 (158)
T ss_dssp CCHHHHHHHHHHHHHHHTSCCCS-SSCEEEEEEETTSCEE-EEECCC--CTTTCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCC-CCcEEEEEEeCCCCEE-EEEccc--cCCccccHHHHHHH
Confidence 45568888999998876533322 2799999986 89987 899975 35678999999874
No 27
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=96.45 E-value=0.007 Score=46.11 Aligned_cols=58 Identities=21% Similarity=0.094 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHhcccCCCCCcEEEEEee-CCeEEEEeecCcccCCCCCchHHHHHhh
Q 039536 91 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 149 (150)
Q Consensus 91 ~D~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAEm~AIr 149 (150)
.+++.+++|.+..++|+..=.+.+|||++.. ||+|+ .|.|-.......+-+||..||-
T Consensus 10 ~~~~L~~~A~~a~~~AyaPYS~F~VGAAll~~dG~iy-tG~NVEnasy~~t~CAEr~Ai~ 68 (138)
T 3dmo_A 10 THHALIEAAKAAREKAYAPYSNFKVGAALVTNDGKVF-HGCNVENASYGLCNCAERTALF 68 (138)
T ss_dssp CHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccCCcCCCCEEEEEEeCCCCEE-EEEeecccccccccCHHHHHHH
Confidence 4678888999988888865335899999996 88966 8999776666678999999873
No 28
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=96.33 E-value=0.0039 Score=49.54 Aligned_cols=39 Identities=21% Similarity=0.105 Sum_probs=31.6
Q ss_pred CCCCCcEEEEEee--C---CeEEEEeecCcccCCCCCchHHHHHhhC
Q 039536 109 CGDGGPFGAVVVR--S---DEVVVSCHNMVLKHTDPTAHAEVTAVRE 150 (150)
Q Consensus 109 ~Ge~~PVGAVIV~--d---GeIIa~G~N~~~~~~DpTaHAEm~AIr~ 150 (150)
.|.+..+.|..|+ + +.||++|+|+. .+++.|||++||++
T Consensus 29 ~~r~~tyLcy~v~~~~~~~~~ii~~G~~~~---~~~~~HAE~~Ai~~ 72 (190)
T 2nyt_A 29 SGRNKTFLCYVVEAQGKGGQVQASRGYLED---EHAAAHAEEAFFNT 72 (190)
T ss_pred CCCCceEEEEEEEecCCCCCCeEEEEECCC---CCCCcCHHHHHHHH
Confidence 3445789999996 3 56999999986 47999999999963
No 29
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=96.11 E-value=0.011 Score=49.91 Aligned_cols=57 Identities=19% Similarity=0.049 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHH-HhcccCCCCCcEEEEEee-CCeEEEEeecCcccC--CCCCchHHHHHhh
Q 039536 92 DHEFLSKAVEEA-YKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKH--TDPTAHAEVTAVR 149 (150)
Q Consensus 92 D~~~Mr~AIelA-~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~--~DpTaHAEm~AIr 149 (150)
+++++..+...| .+++..-.+.+|||++.. ||+|+ .|.|-...+ .+.+.|||..||.
T Consensus 49 ~~~ll~~~a~~a~~~AyaPyS~f~VGAall~~dG~i~-~G~NvEnas~~~~~t~CAEr~Ai~ 109 (294)
T 1ctt_A 49 EDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWY-FGANMEFIGATMQQTVHAEQSAIS 109 (294)
T ss_dssp HHHHHHHHHHHHHHTCBCTTTCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCccCCCcEEEEEEeCCCCEE-EEEcCCccCccCCCccCHHHHHHH
Confidence 455665555444 446654224899999996 89877 899966433 2358999999984
No 30
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=94.25 E-value=0.12 Score=43.71 Aligned_cols=56 Identities=11% Similarity=-0.009 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhcccCCCCCcEEEEEee-CCeEEEEeecCcccCCCCCchHHHHHhh
Q 039536 93 HEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 149 (150)
Q Consensus 93 ~~~Mr~AIelA~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAEm~AIr 149 (150)
++.++.|++.+++++..-.+.+|||.|.. ||+|. .|.|-.....+++..||..||-
T Consensus 193 ~~L~~~A~~a~~~ayaPYS~~~vGAAl~t~dG~iy-tG~nvEnAay~~slcAEr~Al~ 249 (298)
T 4eg2_A 193 EELIQQALRAMNISHSPYTQNFSGVALKMRSGAIY-LGAYAENAAFNPSLPPLQVALA 249 (298)
T ss_dssp CHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCTTSTTCBCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCccCCCeEEEEEeCCCCEE-EEEeeeccccCCCCCHHHHHHH
Confidence 56789999999998865445899999997 88865 8989777778899999999873
No 31
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=88.74 E-value=1.1 Score=37.91 Aligned_cols=57 Identities=23% Similarity=0.108 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHH-HhcccCCCCCcEEEEEee-CCeEEEEeecCcccC--CCCCchHHHHHhh
Q 039536 92 DHEFLSKAVEEA-YKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKH--TDPTAHAEVTAVR 149 (150)
Q Consensus 92 D~~~Mr~AIelA-~kA~~~Ge~~PVGAVIV~-dGeIIa~G~N~~~~~--~DpTaHAEm~AIr 149 (150)
+.+++...+..| ++|+..=.+.+|||++.. ||+|+ .|.|-...+ ...+-|||..||-
T Consensus 52 ~~el~~~l~~~A~~~AyaPyS~F~VGAAll~~dG~i~-~G~NvEna~as~~~t~CAEr~Ai~ 112 (298)
T 4eg2_A 52 DADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLY-LGANMEFTGAQLGQTVHAEQCAIS 112 (298)
T ss_dssp HHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcCCcCCCcEEEEEEECCCcEE-EEEcccccccccCccccHHHHHHH
Confidence 444555444444 444443234899999986 88866 899966322 2257999999873
No 32
>3mtw_A L-arginine carboxypeptidase CC2672; hydrolase; HET: KCX M3R; 1.70A {Caulobacter vibrioides}
Probab=30.53 E-value=41 Score=24.68 Aligned_cols=18 Identities=11% Similarity=0.025 Sum_probs=15.9
Q ss_pred EEEEeeCCeEEEEeecCc
Q 039536 116 GAVVVRSDEVVVSCHNMV 133 (150)
Q Consensus 116 GAVIV~dGeIIa~G~N~~ 133 (150)
|+|+|+||+|++.|-+..
T Consensus 23 ~~V~I~dG~I~~Ig~~~~ 40 (403)
T 3mtw_A 23 PLVIVTDGRITSIGKKGD 40 (403)
T ss_dssp EEEEEETTEEEEEEETTC
T ss_pred cEEEEECCEEEEEeCCCC
Confidence 899999999999998753
No 33
>2fb5_A Hypothetical membrane spanning protein; structural genomics, membrane protein, PSI, protein structur initiative; 1.99A {Bacillus cereus} SCOP: d.320.1.1
Probab=29.61 E-value=26 Score=28.22 Aligned_cols=17 Identities=29% Similarity=0.630 Sum_probs=14.7
Q ss_pred EEEEeeCCeEEEEeecC
Q 039536 116 GAVVVRSDEVVVSCHNM 132 (150)
Q Consensus 116 GAVIV~dGeIIa~G~N~ 132 (150)
||||+++|+|++.|.--
T Consensus 136 GAvII~~~rI~aA~~~L 152 (205)
T 2fb5_A 136 GAVLVKNNHIVSAANIL 152 (205)
T ss_dssp SEEEEETTEEEEEEEBC
T ss_pred cEEEEECCEEEEEEEEe
Confidence 99999999999997543
No 34
>3hpa_A Amidohydrolase; signature of Zn ligands, structural genomics, NYSGXRC, target 9236E, PSI-2, protein structure initiative; 2.20A {Unidentified}
Probab=20.60 E-value=75 Score=24.93 Aligned_cols=18 Identities=6% Similarity=0.171 Sum_probs=15.9
Q ss_pred EEEEeeCCeEEEEeecCc
Q 039536 116 GAVVVRSDEVVVSCHNMV 133 (150)
Q Consensus 116 GAVIV~dGeIIa~G~N~~ 133 (150)
|+|+|+||+|.+.|-+..
T Consensus 52 gdV~I~dgrI~aVG~~~~ 69 (479)
T 3hpa_A 52 AGLYIEDNRIVAVGPSAE 69 (479)
T ss_dssp EEEEEETTEEEEEEEGGG
T ss_pred cEEEEECCEEEEEeCCcc
Confidence 899999999999997754
No 35
>2xde_A GAG polyprotein, HIV-1 capsid; AIDS, viral protein; HET: 1B0; 1.40A {Human immunodeficiency virus 1} PDB: 1m9y_C 2x2d_D* 1m9x_C 1m9e_C 1m9f_C 1afv_A 1gwp_A 2pxr_C 2gol_B 1m9c_C 2x83_A 4e91_A* 4e92_A* 2pwo_A 2pwm_A 2gon_A 1ak4_C 2jpr_A* 1m9d_C 4dga_C ...
Probab=20.04 E-value=19 Score=27.73 Aligned_cols=44 Identities=27% Similarity=0.326 Sum_probs=30.8
Q ss_pred hhhcChheehhhhcCCccccccceeecCCCccccccchhcccccCchhHHHHH
Q 039536 44 SQLITSTTFIHFINNNNNMEEANVVETKDGTISVASAFAAHQEAVQDRDHEFL 96 (150)
Q Consensus 44 ~~~~~~~~~~~~i~~~~~~~e~~v~~~k~g~~~v~~a~~~~~e~~~~~D~~~M 96 (150)
-|+++|.++.-|| |++|.|.-...+-+-|+..+|..++.|...|
T Consensus 13 Hq~lSPRTLnaWV---------KvvEEkafspEvipmFsALSeg~TP~Dln~m 56 (145)
T 2xde_A 13 HQAISPRTLNAWV---------KVVEEKAFSPEVIPMFSALSEGATPQDLNTM 56 (145)
T ss_dssp ECCCCHHHHHHHH---------HHHHHHTSCTTHHHHHHHHTTTCCHHHHHHH
T ss_pred ccCCCchHHHHHH---------HHHHHhcCCcchhHHHHHHHcccCcHHHHHH
Confidence 3678999888884 3566666666666668888888777775543
No 36
>2wlv_A GAG polyprotein, HIV-2 capsid,; virus protein, RNA-binding, capsid protein, viral nucleoprotein, AIDS; 1.25A {Human immunodeficiency virus type 2} PDB: 2x82_A
Probab=20.01 E-value=16 Score=28.04 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=30.2
Q ss_pred hhcChheehhhhcCCccccccceeecCCCccccccchhcccccCchhHHHHH
Q 039536 45 QLITSTTFIHFINNNNNMEEANVVETKDGTISVASAFAAHQEAVQDRDHEFL 96 (150)
Q Consensus 45 ~~~~~~~~~~~i~~~~~~~e~~v~~~k~g~~~v~~a~~~~~e~~~~~D~~~M 96 (150)
|+++|.++.-|| |++|.|.-...+-+-|+..+|..++.|...|
T Consensus 12 q~lsPRtLnaWV---------K~vEEK~fspEvipmFsALSegaTP~Dln~m 54 (144)
T 2wlv_A 12 IPLSPRTLNAWV---------KLVEEKKFGAEVVPGFQALSEGCTPYDINQM 54 (144)
T ss_dssp CCCCHHHHHHHH---------HHHHHHTSCTTHHHHHHHHTTTCCHHHHHHH
T ss_pred cCCCcHHHHHHH---------HHHHhccCCchhhHHHHHHhcccCcHHHHHH
Confidence 678888888873 4666666666666667888888777765543
Done!